Citrus Sinensis ID: 030257

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180
Protein Sequence
MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKFSLLDNIRF
Secondary Structure (PSIPRED)
cccccEEEcccccccccccHHHHHccccccEEEccccccccccccccccccccccEEcccccccccccccHHccccccccccccccccccccHHHHccccccccccccccccccccHHHHccccccEEEccccccccccccHHHHccccccEEccccccccccccHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEccccccccccHHHHHHcccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEccccccccccccHHHcccccccEEEcccccccccccHHHHHHHHHHcEccc
Coil and Loop (DISEMBL)
mssllsirftnntlfgelppnfcnhLSNLESLFlknnmfhgkipstlsnckrLRNIslslddfsgtipkeiGNVTKLIRLYLRGnqlqgeipeeLGNLAELEMLWLQNNfltraipssifnlsslsnldlsvnnltggiipsllgnqsSLQTLYLSYnqlsgpipsfilckfslldnirf
Flexible Loop (DISEMBL)
MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISlslddfsgtipkEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKFslldnirf
Low Complexity Region (SEG)
MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPssifnlsslsnldlsvnnlTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKFSLLDNIRF
Disordered region (IsUnstruct)
****LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKFSLLDN***
Disordered Region (DISOPRED)
MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKFSLLDNIRF
Disordered Region (DISEMBL)
MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKFSLLDNIRF
Disordered Region (DISPRO)
MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKFSLLDNIRF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKFSLLDNIRF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	180	2.2.26 [Sep-21-2011]
O22476	1196	Protein BRASSINOSTEROID I	yes	no	0.911	0.137	0.451	4e-25
Q9ZPS9	1143	Serine/threonine-protein	no	no	0.9	0.141	0.417	2e-24
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.85	0.146	0.445	2e-24
Q8GUQ5	1207	Brassinosteroid LRR recep	N/A	no	0.9	0.134	0.432	6e-24
Q8L899	1207	Systemin receptor SR160 O	N/A	no	0.9	0.134	0.432	1e-23
Q9LHP4	1141	Receptor-like protein kin	no	no	0.961	0.151	0.418	2e-23
Q9LP24	1120	Probable leucine-rich rep	no	no	0.911	0.146	0.427	5e-23
O49318	1124	Probable leucine-rich rep	no	no	0.888	0.142	0.389	4e-22
C0LGV1	1135	LRR receptor-like serine/	no	no	0.838	0.133	0.431	5e-22
Q9C9H7	847	Receptor-like protein 12	no	no	0.877	0.186	0.418	6e-22

>sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1

 Score =  114 bits (284), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 75/166 (45%), Positives = 103/166 (62%), Gaps = 2/166 (1%)

Query: 2   SSLLSIRFTNNTLFGELPPNFCNHLSN-LESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +SLL++  ++N   G + PN C +  N L+ L+L+NN F GKIP TLSNC  L ++ LS 
Sbjct: 390 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 449

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           +  SGTIP  +G+++KL  L L  N L+GEIP+EL  +  LE L L  N LT  IPS + 
Sbjct: 450 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 509

Query: 121 NLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPS 166
           N ++L+ + LS N LTG  IP  +G   +L  L LS N  SG IP+
Sbjct: 510 NCTNLNWISLSNNRLTGE-IPKWIGRLENLAILKLSNNSFSGNIPA 554

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. Binds brassinolide, and less effectively castasterone, but not 2,3,22,23-O-tetramethylbrassinolide or ecdysone. May be involved in a feedback regulation of brassinosteroid biosynthesis. Phosphorylates BRI1-associated receptor kinase 1 (BAK1), Transthyretin-Like protein (TTL) and SERK1 on 'Ser-299' and 'Thr-462' in vitro. May have a guanylyl cyclase activity.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score =  112 bits (279), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/163 (41%), Positives = 91/163 (55%), Gaps = 1/163 (0%)

Query: 3   SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDD 62
           SL    F++N   G +PP+ C   ++LE L L +N+  G+IP  +S C  LR I LSL+ 
Sbjct: 351 SLRIADFSSNRFSGVIPPDLCPGAASLEELRLPDNLVTGEIPPAISQCSELRTIDLSLNY 410

Query: 63  FSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNL 122
            +GTIP EIGN+ KL +     N + GEIP E+G L  L+ L L NN LT  IP   FN 
Sbjct: 411 LNGTIPPEIGNLQKLEQFIAWYNNIAGEIPPEIGKLQNLKDLILNNNQLTGEIPPEFFNC 470

Query: 123 SSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIP 165
           S++  +  + N LTG  +P   G  S L  L L  N  +G IP
Sbjct: 471 SNIEWVSFTSNRLTGE-VPKDFGILSRLAVLQLGNNNFTGEIP 512

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  112 bits (279), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/155 (44%), Positives = 95/155 (61%), Gaps = 2/155 (1%)

Query: 12  NTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEI 71
           N L GE+PP   + LSNL++L L  N  +G IPS +    ++  I++  +  +G IP   
Sbjct: 152 NQLVGEIPPELGD-LSNLDTLHLVENKLNGSIPSEIGRLTKVTEIAIYDNLLTGPIPSSF 210

Query: 72  GNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLS 131
           GN+TKL+ LYL  N L G IP E+GNL  L  L L  N LT  IPSS  NL +++ L++ 
Sbjct: 211 GNLTKLVNLYLFINSLSGSIPSEIGNLPNLRELCLDRNNLTGKIPSSFGNLKNVTLLNMF 270

Query: 132 VNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPS 166
            N L+G I P  +GN ++L TL L  N+L+GPIPS
Sbjct: 271 ENQLSGEIPPE-IGNMTALDTLSLHTNKLTGPIPS 304

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1

 Score =  110 bits (274), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 71/164 (43%), Positives = 104/164 (63%), Gaps = 2/164 (1%)

Query: 4   LLSIRFTNNTLFGELPPNFCNH-LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDD 62
           L ++  ++N L G +P   C   ++NL+ L+L+NN+F G IP +LSNC +L ++ LS + 
Sbjct: 403 LETLDMSSNNLTGVIPSGICKDPMNNLKVLYLQNNLFKGPIPDSLSNCSQLVSLDLSFNY 462

Query: 63  FSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNL 122
            +G+IP  +G+++KL  L L  NQL GEIP+EL  L  LE L L  N LT  IP+S+ N 
Sbjct: 463 LTGSIPSSLGSLSKLKDLILWLNQLSGEIPQELMYLQALENLILDFNDLTGPIPASLSNC 522

Query: 123 SSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPS 166
           + L+ + LS N L+G  IP+ LG  S+L  L L  N +SG IP+
Sbjct: 523 TKLNWISLSNNQLSGE-IPASLGRLSNLAILKLGNNSISGNIPA 565

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. May be involved in a feedback regulation of brassinosteroid biosynthesis. May be also involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8L899|BRI1_SOLPE Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1

 Score =  109 bits (272), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/164 (43%), Positives = 104/164 (63%), Gaps = 2/164 (1%)

Query: 4   LLSIRFTNNTLFGELPPNFCNH-LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDD 62
           L ++  ++N L G +P   C   ++NL+ L+L+NN+F G IP +LSNC +L ++ LS + 
Sbjct: 403 LETLDMSSNNLTGIIPSGICKDPMNNLKVLYLQNNLFKGPIPDSLSNCSQLVSLDLSFNY 462

Query: 63  FSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNL 122
            +G+IP  +G+++KL  L L  NQL GEIP+EL  L  LE L L  N LT  IP+S+ N 
Sbjct: 463 LTGSIPSSLGSLSKLKDLILWLNQLSGEIPQELMYLQALENLILDFNDLTGPIPASLSNC 522

Query: 123 SSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPS 166
           + L+ + LS N L+G  IP+ LG  S+L  L L  N +SG IP+
Sbjct: 523 TKLNWISLSNNQLSGE-IPASLGRLSNLAILKLGNNSISGNIPA 565

Receptor with a serine/threonine-protein kinase activity. Involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. May also regulate, in response to brassinosteroid binding, a signaling cascade involved in plant development.

Solanum peruvianum (taxid: 4082)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  108 bits (270), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/177 (41%), Positives = 102/177 (57%), Gaps = 4/177 (2%)

Query: 2   SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLD 61
           S+L  I  + N L G +P +    LS LE   + +N F G IP+T+SNC  L  + L  +
Sbjct: 322 SNLKMIDLSLNLLSGSIPSSI-GRLSFLEEFMISDNKFSGSIPTTISNCSSLVQLQLDKN 380

Query: 62  DFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFN 121
             SG IP E+G +TKL   +   NQL+G IP  L +  +L+ L L  N LT  IPS +F 
Sbjct: 381 QISGLIPSELGTLTKLTLFFAWSNQLEGSIPPGLADCTDLQALDLSRNSLTGTIPSGLFM 440

Query: 122 LSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFI--LCKFSLLD 176
           L +L+ L L  N+L+ G IP  +GN SSL  L L +N+++G IPS I  L K + LD
Sbjct: 441 LRNLTKLLLISNSLS-GFIPQEIGNCSSLVRLRLGFNRITGEIPSGIGSLKKINFLD 496

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  107 bits (267), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/166 (42%), Positives = 98/166 (59%), Gaps = 2/166 (1%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           M S+  +  + N L G +P +  N L NL  L+L  N   G IP  L N + + +++LS 
Sbjct: 173 MESMTDLALSQNKLTGSIPSSLGN-LKNLMVLYLYENYLTGVIPPELGNMESMTDLALSQ 231

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           +  +G+IP  +GN+  L+ LYL  N L G IP E+GN+  +  L L  N LT +IPSS+ 
Sbjct: 232 NKLTGSIPSTLGNLKNLMVLYLYENYLTGVIPPEIGNMESMTNLALSQNKLTGSIPSSLG 291

Query: 121 NLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPS 166
           NL +L+ L L  N LTGGI P  LGN  S+  L LS N+L+G IPS
Sbjct: 292 NLKNLTLLSLFQNYLTGGIPPK-LGNIESMIDLELSNNKLTGSIPS 336

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  103 bits (258), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/185 (38%), Positives = 101/185 (54%), Gaps = 25/185 (13%)

Query: 12  NTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEI 71
           N   G +P +  N L++LE+L L  N   G IPS + N K L+ + L  +  +GTIPKE+
Sbjct: 263 NKFSGFIPKDIGN-LTSLETLALYGNSLVGPIPSEIGNMKSLKKLYLYQNQLNGTIPKEL 321

Query: 72  GNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLS 131
           G ++K++ +    N L GEIP EL  ++EL +L+L  N LT  IP+ +  L +L+ LDLS
Sbjct: 322 GKLSKVMEIDFSENLLSGEIPVELSKISELRLLYLFQNKLTGIIPNELSKLRNLAKLDLS 381

Query: 132 VNNLTG-----------------------GIIPSLLGNQSSLQTLYLSYNQLSGPIPSFI 168
           +N+LTG                       G+IP  LG  S L  +  S NQLSG IP FI
Sbjct: 382 INSLTGPIPPGFQNLTSMRQLQLFHNSLSGVIPQGLGLYSPLWVVDFSENQLSGKIPPFI 441

Query: 169 LCKFS 173
            C+ S
Sbjct: 442 -CQQS 445

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGV1|RCH1_ARATH LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1

 Score =  103 bits (257), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 66/153 (43%), Positives = 89/153 (58%), Gaps = 2/153 (1%)

Query: 16  GELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVT 75
           G LP +    LS L+SL + + M  G+IP  L NC  L N+ L  +D SGT+PKE+G + 
Sbjct: 241 GSLPVSL-GQLSKLQSLSVYSTMLSGEIPKELGNCSELINLFLYDNDLSGTLPKELGKLQ 299

Query: 76  KLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNL 135
            L ++ L  N L G IPEE+G +  L  + L  N+ +  IP S  NLS+L  L LS NN+
Sbjct: 300 NLEKMLLWQNNLHGPIPEEIGFMKSLNAIDLSMNYFSGTIPKSFGNLSNLQELMLSSNNI 359

Query: 136 TGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFI 168
           TG  IPS+L N + L    +  NQ+SG IP  I
Sbjct: 360 TGS-IPSILSNCTKLVQFQIDANQISGLIPPEI 391

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  103 bits (257), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 67/160 (41%), Positives = 95/160 (59%), Gaps = 2/160 (1%)

Query: 10  TNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPK 69
            NN L GE+P +  N LS L +L L +N   GKIP ++ + K+LRN+SL+ ++  G IP 
Sbjct: 166 ANNVLTGEIPSSLGN-LSRLVNLELFSNRLVGKIPDSIGDLKQLRNLSLASNNLIGEIPS 224

Query: 70  EIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLD 129
            +GN++ L+ L L  NQL GE+P  +GNL EL ++  +NN L+  IP S  NL+ LS   
Sbjct: 225 SLGNLSNLVHLVLTHNQLVGEVPASIGNLIELRVMSFENNSLSGNIPISFANLTKLSIFV 284

Query: 130 LSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFIL 169
           LS NN T    P  +    +L+   +SYN  SGP P  +L
Sbjct: 285 LSSNNFT-STFPFDMSIFHNLEYFDVSYNSFSGPFPKSLL 323

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
147776333	1205	hypothetical protein VITISV_000078 [Viti	0.977	0.146	0.469	1e-30
147769371	1241	hypothetical protein VITISV_010511 [Viti	0.922	0.133	0.458	2e-29
255578886	1043	serine-threonine protein kinase, plant-t	0.922	0.159	0.409	4e-29
359485451	1454	PREDICTED: LRR receptor-like serine/thre	0.944	0.116	0.454	2e-28
359483677	1229	PREDICTED: LRR receptor-like serine/thre	0.911	0.133	0.463	2e-28
298710893	1261	LRR-GTPase of the ROCO family [Ectocarpu	0.844	0.120	0.487	3e-28
359485453	1202	PREDICTED: probable LRR receptor-like se	0.911	0.136	0.445	8e-28
359497186	1140	PREDICTED: LRR receptor-like serine/thre	0.911	0.143	0.457	1e-27
296085726	932	unnamed protein product [Vitis vinifera]	0.911	0.175	0.457	1e-27
449465014	1029	PREDICTED: LRR receptor-like serine/thre	0.988	0.172	0.409	1e-27

>gi|147776333|emb|CAN72034.1| hypothetical protein VITISV_000078 [Vitis vinifera]

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/183 (46%), Positives = 111/183 (60%), Gaps = 7/183 (3%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +SSL  I FTNN+L G LP   C HL NL+ L+L  N   G++P+TLS C  L  +SLS 
Sbjct: 339 ISSLQVIDFTNNSLSGSLPMGICKHLPNLQGLYLAQNHLSGQLPTTLSLCGELLFLSLSF 398

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           + F G+IP+EIGN++KL  + LR N L G IP   GNL  L+ L L  NFLT  +P +IF
Sbjct: 399 NKFRGSIPREIGNLSKLEHIDLRSNSLVGSIPTSFGNLKALKFLNLGINFLTGTVPEAIF 458

Query: 121 NLSSLSNLDLSVNNLTGGIIPSLLGNQ-SSLQTLYLSYNQLSGPIPSFI-----LCKFSL 174
           N+S L NL L  N+L+G  +PS +G     L+ LY+  N+ SG IP  I     L   SL
Sbjct: 459 NISELQNLALVQNHLSGS-LPSSIGTWLPDLEGLYIGANEFSGTIPMSISNMSKLTVLSL 517

Query: 175 LDN 177
            DN
Sbjct: 518 SDN 520

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147769371|emb|CAN72496.1| hypothetical protein VITISV_010511 [Vitis vinifera]

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/168 (45%), Positives = 106/168 (63%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +SSL  I F+NN+L G LP + C HL NL+ L+L  N   G++P+TLS C  L  +SL++
Sbjct: 375 ISSLQIIDFSNNSLSGSLPMDICKHLPNLQGLYLLQNHLSGQLPTTLSLCGELLYLSLAV 434

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           + F G+IP+EIGN++KL  + LR N L G IP   GNL  L+ L L  NFLT  +P +IF
Sbjct: 435 NKFRGSIPREIGNLSKLEDISLRSNSLVGSIPTSFGNLMALKYLDLGMNFLTGTVPEAIF 494

Query: 121 NLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFI 168
           N+S L  L L  N+L+G + PS+      L+ LY+  N+ SG IP  I
Sbjct: 495 NISELQILVLVQNHLSGSLPPSIGTWLPDLEGLYIGSNKFSGTIPMSI 542

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578886|ref|XP_002530297.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223530195|gb|EEF32104.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  132 bits (333), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 77/188 (40%), Positives = 109/188 (57%), Gaps = 22/188 (11%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +SSL  + F  N L G LPPN   HL+NL +L+L +N+F+G IPSTL  C++L+ ++LS 
Sbjct: 173 ISSLWLLDFGTNNLTGRLPPNIFTHLANLRALYLNSNLFNGPIPSTLMACQQLKLLALSF 232

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           + F G+I K+IGN+T L  LYL GN   G IP+E+G+LA LE + L  N L+  +PS I+
Sbjct: 233 NHFEGSIHKDIGNLTMLQELYLGGNNFSGTIPDEIGDLAHLEEIILNVNGLSGLVPSGIY 292

Query: 121 NLSSLSNLDLSVNNLTG----------------------GIIPSLLGNQSSLQTLYLSYN 158
           N S ++ + L++N L+G                      G IP  L N S L  + L +N
Sbjct: 293 NASKMTAIGLALNQLSGYLPSSSNLPNLEFFIIEDNNFTGPIPVSLFNASKLGNIDLGWN 352

Query: 159 QLSGPIPS 166
              GPIP 
Sbjct: 353 SFYGPIPD 360

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485451|ref|XP_002276944.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/174 (45%), Positives = 114/174 (65%), Gaps = 4/174 (2%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNL---ESLFLKNNMFHGKIPSTLSNCKRLRNIS 57
           +SSL  I F+NN+L G LP + C HL +L   E + L +N   G+IPS+LS+C  LR +S
Sbjct: 464 ISSLQEIDFSNNSLSGCLPMDICKHLPDLPKLEFIDLSSNQLKGEIPSSLSHCPHLRGLS 523

Query: 58  LSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPS 117
           LSL+ F+G IP+ IG+++ L  LYL  N L G IP E+GNL+ L +L   ++ ++  IP 
Sbjct: 524 LSLNQFTGGIPQAIGSLSNLEELYLAYNNLVGGIPREIGNLSNLNILDFGSSGISGPIPP 583

Query: 118 SIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFI-LC 170
            IFN+SSL   DL+ N+L G +   +  +  +LQ LYLS+N+LSG +PS + LC
Sbjct: 584 EIFNISSLQIFDLTDNSLLGSLPMDIYKHLPNLQELYLSWNKLSGQLPSTLSLC 637

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483677|ref|XP_003633000.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/166 (46%), Positives = 107/166 (64%), Gaps = 2/166 (1%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +SSL  I FT+N+L G LP + C HL NL+ L L  N   G++P+TLS C  L  +SLS 
Sbjct: 363 VSSLQVIAFTDNSLSGSLPKDICKHLPNLQGLSLSQNHLSGQLPTTLSLCGELLFLSLSF 422

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           + F G+IPKEIGN++KL ++YL  N L G IP   GNL  L+ L L  N LT  +P +IF
Sbjct: 423 NKFRGSIPKEIGNLSKLEKIYLGTNSLIGSIPTSFGNLKALKFLNLGINNLTGTVPEAIF 482

Query: 121 NLSSLSNLDLSVNNLTGGIIPSLLGNQ-SSLQTLYLSYNQLSGPIP 165
           N+S L +L +  N+L+G  +PS +G   S L+ L+++ N+ SG IP
Sbjct: 483 NISKLQSLAMVKNHLSGS-LPSSIGTWLSDLEGLFIAGNEFSGIIP 527

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298710893|emb|CBJ26402.1| LRR-GTPase of the ROCO family [Ectocarpus siliculosus]

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 75/154 (48%), Positives = 98/154 (63%), Gaps = 2/154 (1%)

Query: 12  NTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEI 71
           N L G +P    N L+ L+   L  N   G IPS L +   L+ + LS +  SGTIP+ +
Sbjct: 124 NELTGPIPRELGN-LAALQYFSLGYNELSGPIPSELGHLSALKRLYLSNNQLSGTIPEAL 182

Query: 72  GNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLS 131
           G +T L  LYL  N+L G IP+ELG L+ LEMLWL +N LT  IP  + NL++L +L+LS
Sbjct: 183 GKLTALQGLYLHRNKLSGPIPKELGELSRLEMLWLNDNSLTGPIPRELGNLAALRDLNLS 242

Query: 132 VNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIP 165
            N L+G  IPS LG+ S+L+ LYL  NQLSGPIP
Sbjct: 243 YNKLSGP-IPSELGHLSALKELYLHNNQLSGPIP 275

Source: Ectocarpus siliculosus

Species: Ectocarpus siliculosus

Genus: Ectocarpus

Family: Ectocarpaceae

Order: Ectocarpales

Phylum: Phaeophyceae

Superkingdom: Eukaryota

>gi|359485453|ref|XP_003633276.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera]

 Score =  128 bits (322), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 74/166 (44%), Positives = 109/166 (65%), Gaps = 2/166 (1%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +SSL  I F NN+L G LP + C HL NL+ L L  N   G++P+TLS C  L  ++L+ 
Sbjct: 333 ISSLQEIGFANNSLSGSLPMDICKHLPNLQWLLLSLNQLSGQLPTTLSLCGELLTLTLAY 392

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           ++F+G+IP+EIGN++KL ++Y R +   G IP+ELGNL  L+ L L  N LT  +P +IF
Sbjct: 393 NNFTGSIPREIGNLSKLEQIYFRRSSFTGNIPKELGNLVNLQFLSLNVNNLTGIVPEAIF 452

Query: 121 NLSSLSNLDLSVNNLTGGIIPSLLGNQ-SSLQTLYLSYNQLSGPIP 165
           N+S L  L L+ N+L+G  +PS +G+   +L+ L +  N+ SG IP
Sbjct: 453 NISKLQVLSLAGNHLSGS-LPSSIGSWLPNLEQLLIGGNEFSGIIP 497

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497186|ref|XP_003635448.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/166 (45%), Positives = 105/166 (63%), Gaps = 2/166 (1%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +SSL  I FT+N+L G LP + C HL NL+ L L  N   G++P+TLS C  L  +SLS 
Sbjct: 274 VSSLQVIAFTDNSLSGSLPKDICKHLPNLQGLSLSQNHLSGQLPTTLSLCGELLFLSLSF 333

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           + F G+IPKEIGN++KL  +YL  N L G IP   GNL  L+ L L  N LT  +P +IF
Sbjct: 334 NKFRGSIPKEIGNLSKLEEIYLGTNSLIGSIPTSFGNLKALKFLNLGINNLTGTVPEAIF 393

Query: 121 NLSSLSNLDLSVNNLTGGIIPSLLGNQ-SSLQTLYLSYNQLSGPIP 165
           N+S L +L +  N+L+G  +PS +G     L+ L+++ N+ SG IP
Sbjct: 394 NISKLQSLAMVKNHLSGS-LPSSIGTWLPDLEGLFIAGNEFSGIIP 438

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085726|emb|CBI29526.3| unnamed protein product [Vitis vinifera]

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/166 (45%), Positives = 105/166 (63%), Gaps = 2/166 (1%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +SSL  I FT+N+L G LP + C HL NL+ L L  N   G++P+TLS C  L  +SLS 
Sbjct: 134 VSSLQVIAFTDNSLSGSLPKDICKHLPNLQGLSLSQNHLSGQLPTTLSLCGELLFLSLSF 193

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           + F G+IPKEIGN++KL  +YL  N L G IP   GNL  L+ L L  N LT  +P +IF
Sbjct: 194 NKFRGSIPKEIGNLSKLEEIYLGTNSLIGSIPTSFGNLKALKFLNLGINNLTGTVPEAIF 253

Query: 121 NLSSLSNLDLSVNNLTGGIIPSLLGNQ-SSLQTLYLSYNQLSGPIP 165
           N+S L +L +  N+L+G  +PS +G     L+ L+++ N+ SG IP
Sbjct: 254 NISKLQSLAMVKNHLSGS-LPSSIGTWLPDLEGLFIAGNEFSGIIP 298

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465014|ref|XP_004150224.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Cucumis sativus]

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/183 (40%), Positives = 110/183 (60%), Gaps = 5/183 (2%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +SSL+++  T N   G LP + C +L  L+ L+L  N   G++PSTL  C+ + ++ ++ 
Sbjct: 157 LSSLIALDLTRNNFTGGLPDDICENLPALKGLYLSVNHLSGRLPSTLWRCENIVDVGMAD 216

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           ++F+G+IP   GN+T   ++ L GN L GEIP+E GNL  LE L LQ N L   IPS+IF
Sbjct: 217 NEFTGSIPTNFGNLTWAKQIVLWGNYLSGEIPKEFGNLPNLETLVLQENLLNGTIPSTIF 276

Query: 121 NLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFI-----LCKFSLL 175
           NL+ L  + L  N L+G + P+L  N  +L  L+L  N+L+G IP  I     L KF L 
Sbjct: 277 NLTKLRIMSLFRNQLSGTLPPNLGTNLPNLVMLFLGENELTGSIPESISNASMLSKFDLS 336

Query: 176 DNI 178
            N+
Sbjct: 337 QNL 339

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
TAIR|locus:2005498	1196	BRI1 "BRASSINOSTEROID INSENSIT	0.911	0.137	0.409	1.3e-22
TAIR|locus:2138268	1045	AT4G08850 [Arabidopsis thalian	0.85	0.146	0.4	1.3e-21
TAIR|locus:2085949	1141	AT3G24240 [Arabidopsis thalian	0.961	0.151	0.372	1.8e-21
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.961	0.183	0.378	2.2e-21
TAIR|locus:2032697	1123	PEPR1 "PEP1 receptor 1" [Arabi	0.944	0.151	0.369	7.8e-21
UNIPROTKB|Q942F3	1121	P0480C01.18-1 "cDNA clone:J033	0.911	0.146	0.373	1.1e-20
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.927	0.197	0.349	1.3e-20
TAIR|locus:4515102753	598	AT1G73066 [Arabidopsis thalian	0.938	0.282	0.368	1.4e-20
TAIR|locus:2011339	1120	AT1G35710 [Arabidopsis thalian	0.911	0.146	0.373	1.6e-20
TAIR|locus:2041150	1143	BRL2 "BRI1-like 2" [Arabidopsi	0.9	0.141	0.386	1.7e-20

TAIR|locus:2005498 BRI1 "BRASSINOSTEROID INSENSITIVE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 68/166 (40%), Positives = 91/166 (54%)

Query:     2 SSLLSIRFTNNTLFGELPPNFCNHLSN-LESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
             +SLL++  ++N   G + PN C +  N L+ L+L+NN F GKIP TLSNC  L ++ LS 
Sbjct:   390 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 449

Query:    61 DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPXXXX 120
             +  SGTIP  +G+++KL  L L  N L+GEIP+EL  +  LE L L  N LT  IP    
Sbjct:   450 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 509

Query:   121 XXXXXXXXXXXXXXXTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPS 166
                            TG I P  +G   +L  L LS N  SG IP+
Sbjct:   510 NCTNLNWISLSNNRLTGEI-PKWIGRLENLAILKLSNNSFSGNIPA 554

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0016301 "kinase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0010224 "response to UV-B" evidence=IGI

GO:0005768 "endosome" evidence=IDA

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0010268 "brassinosteroid homeostasis" evidence=IEP

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0043234 "protein complex" evidence=IPI

GO:0004672 "protein kinase activity" evidence=IDA

GO:0060548 "negative regulation of cell death" evidence=IMP

GO:1900140 "regulation of seedling development" evidence=IMP

GO:0009911 "positive regulation of flower development" evidence=IGI

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IEP;IMP

GO:0010584 "pollen exine formation" evidence=IMP

GO:0048657 "tapetal cell differentiation" evidence=IMP

GO:0048366 "leaf development" evidence=IMP

GO:0005496 "steroid binding" evidence=IDA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0016310 "phosphorylation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0009729 "detection of brassinosteroid stimulus" evidence=IMP

TAIR|locus:2138268 AT4G08850 [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 1.3e-21, P = 1.3e-21
 Identities = 62/155 (40%), Positives = 82/155 (52%)

Query:    12 NTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEI 71
             N L GE+PP     LSNL++L L  N  +G IPS +    ++  I++  +  +G IP   
Sbjct:   152 NQLVGEIPPEL-GDLSNLDTLHLVENKLNGSIPSEIGRLTKVTEIAIYDNLLTGPIPSSF 210

Query:    72 GNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPXXXXXXXXXXXXXXX 131
             GN+TKL+ LYL  N L G IP E+GNL  L  L L  N LT  IP               
Sbjct:   211 GNLTKLVNLYLFINSLSGSIPSEIGNLPNLRELCLDRNNLTGKIPSSFGNLKNVTLLNMF 270

Query:   132 XXXXTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPS 166
                 +G I P + GN ++L TL L  N+L+GPIPS
Sbjct:   271 ENQLSGEIPPEI-GNMTALDTLSLHTNKLTGPIPS 304

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2085949 AT3G24240 [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 1.8e-21, P = 1.8e-21
 Identities = 66/177 (37%), Positives = 90/177 (50%)

Query:     2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLD 61
             S+L  I  + N L G +P +    LS LE   + +N F G IP+T+SNC  L  + L  +
Sbjct:   322 SNLKMIDLSLNLLSGSIPSSI-GRLSFLEEFMISDNKFSGSIPTTISNCSSLVQLQLDKN 380

Query:    62 DFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPXXXXX 121
               SG IP E+G +TKL   +   NQL+G IP  L +  +L+ L L  N LT  IP     
Sbjct:   381 QISGLIPSELGTLTKLTLFFAWSNQLEGSIPPGLADCTDLQALDLSRNSLTGTIPSGLFM 440

Query:   122 XXXXXXXXXXXXXXTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFI--LCKFSLLD 176
                           +G  IP  +GN SSL  L L +N+++G IPS I  L K + LD
Sbjct:   441 LRNLTKLLLISNSLSG-FIPQEIGNCSSLVRLRLGFNRITGEIPSGIGSLKKINFLD 496

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 2.2e-21, P = 2.2e-21
 Identities = 67/177 (37%), Positives = 93/177 (52%)

Query:     1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
             +S L S+  + N   G +P +  N LS L SL L +N F G+IPS++ N   L ++ LS 
Sbjct:   148 LSHLTSLHLSYNQFLGLIPSSIEN-LSRLTSLHLSSNQFSGQIPSSIGNLSHLTSLELSS 206

Query:    61 DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQ-NNFLTRAIPXXX 119
             + FSG IP  IGN++ L  L L  N   G+IP  +GNLA L  L+L  NNF+   IP   
Sbjct:   207 NQFSGQIPSSIGNLSNLTFLSLPSNDFFGQIPSSIGNLARLTYLYLSYNNFVGE-IPSSF 265

Query:   120 XXXXXXXXXXXXXXXXTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKFSLLD 176
                             +G +  SLL N + L  L LS+NQ +G IP+ I    +L+D
Sbjct:   266 GNLNQLIVLQVDSNKLSGNVPISLL-NLTRLSALLLSHNQFTGTIPNNISLLSNLMD 321

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2032697 PEPR1 "PEP1 receptor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 7.8e-21, P = 7.8e-21
 Identities = 65/176 (36%), Positives = 93/176 (52%)

Query:     3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDD 62
             ++ S+ FT + + G+L P     L +L+ L L  N F G IPSTL NC +L  + LS + 
Sbjct:    76 NVASLNFTRSRVSGQLGPEI-GELKSLQILDLSTNNFSGTIPSTLGNCTKLATLDLSENG 134

Query:    63 FSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPXXXXXX 122
             FS  IP  + ++ +L  LYL  N L GE+PE L  + +L++L+L  N LT  IP      
Sbjct:   135 FSDKIPDTLDSLKRLEVLYLYINFLTGELPESLFRIPKLQVLYLDYNNLTGPIPQSIGDA 194

Query:   123 XXXXXXXXXXXXXTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKFSLLDNI 178
                          +G I P  +GN SSLQ LYL  N+L G +P  +    +LL N+
Sbjct:   195 KELVELSMYANQFSGNI-PESIGNSSSLQILYLHRNKLVGSLPESL----NLLGNL 245

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0001653 "peptide receptor activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0045087 "innate immune response" evidence=TAS

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0004383 "guanylate cyclase activity" evidence=IDA

GO:0006955 "immune response" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

UNIPROTKB|Q942F3 P0480C01.18-1 "cDNA clone:J033069J12, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 241 (89.9 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
 Identities = 62/166 (37%), Positives = 84/166 (50%)

Query:     1 MSSLLSIRFTNNTLFGELPPNFCNHL-SNLESLFLKNNMFHGKIPSTLSNCKRLRNISLS 59
             +  L  +  ++NT  G +P + C    S L  L+L+NN   G IP  +SNC  L ++ LS
Sbjct:   317 LPELQQLDLSSNTFSGTIPSSLCQDPNSKLHLLYLQNNYLTGGIPDAVSNCTSLVSLDLS 376

Query:    60 LDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPXXX 119
             L+  +G+IP  +G++  L  L L  N+L+GEIP  L  +  LE L L  N LT +IP   
Sbjct:   377 LNYINGSIPASLGDLGNLQDLILWQNELEGEIPASLSRIQGLEHLILDYNGLTGSIPPEL 436

Query:   120 XXXXXXXXXXXXXXXXTGGIIPSLLGNQSSLQTLYLSYNQLSGPIP 165
                             +G I PS LG  S L  L LS N  SGPIP
Sbjct:   437 AKCTKLNWISLASNRLSGPI-PSWLGKLSYLAILKLSNNSFSGPIP 481

GO:0001578 "microtubule bundle formation" evidence=IMP

GO:0009647 "skotomorphogenesis" evidence=IMP

GO:0009729 "detection of brassinosteroid stimulus" evidence=IMP

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IMP

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 59/169 (34%), Positives = 89/169 (52%)

Query:     1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
             ++ L  +   NN L GE+P +  N LS L +L L +N   GKIP ++ + K+LRN+SL+ 
Sbjct:   157 LNQLRHLILANNVLTGEIPSSLGN-LSRLVNLELFSNRLVGKIPDSIGDLKQLRNLSLAS 215

Query:    61 DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPXXXX 120
             ++  G IP  +GN++ L+ L L  NQL GE+P  +GNL EL ++  +NN L+  IP    
Sbjct:   216 NNLIGEIPSSLGNLSNLVHLVLTHNQLVGEVPASIGNLIELRVMSFENNSLSGNIPISFA 275

Query:   121 XXXXXXXXXXXXXXXTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFIL 169
                            T    P  +    +L+   +SYN  SGP P  +L
Sbjct:   276 NLTKLSIFVLSSNNFTS-TFPFDMSIFHNLEYFDVSYNSFSGPFPKSLL 323

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:4515102753 AT1G73066 [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 1.4e-20, P = 1.4e-20
 Identities = 63/171 (36%), Positives = 88/171 (51%)

Query:     6 SIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSG 65
             S+ FT + + G+L P     L +LE L + +N F G IPS+L NC  L  I LS + FSG
Sbjct:    77 SLNFTGSGVSGQLGPEI-GQLKSLEILDMSSNNFSGIIPSSLGNCSSLVYIDLSENSFSG 135

Query:    66 TIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPXXXXXXXXX 125
              +P  +G++  L  LYL  N L GE+P+ L  +  L  L +++N LT  IP         
Sbjct:   136 KVPDTLGSLKSLADLYLYSNSLTGELPKSLFRIPVLNYLHVEHNNLTGLIPQNVGEAKEL 195

Query:   126 XXXXXXXXXXTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKFSLLD 176
                       TG  IP  +GN S L+ LYL  N+L G +P+ +    SL D
Sbjct:   196 LHLRLFDNQFTG-TIPESIGNCSKLEILYLHKNKLVGSLPASLNLLESLTD 245

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 1.6e-20, P = 1.6e-20
 Identities = 62/166 (37%), Positives = 87/166 (52%)

Query:     1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
             +S L+    + N L GE+ P+  N L NL  L+L  N     IPS L N + + +++LS 
Sbjct:   125 LSKLIYFDLSTNHLTGEISPSLGN-LKNLTVLYLHQNYLTSVIPSELGNMESMTDLALSQ 183

Query:    61 DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPXXXX 120
             +  +G+IP  +GN+  L+ LYL  N L G IP ELGN+  +  L L  N LT +IP    
Sbjct:   184 NKLTGSIPSSLGNLKNLMVLYLYENYLTGVIPPELGNMESMTDLALSQNKLTGSIPSTLG 243

Query:   121 XXXXXXXXXXXXXXXTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPS 166
                            TG +IP  +GN  S+  L LS N+L+G IPS
Sbjct:   244 NLKNLMVLYLYENYLTG-VIPPEIGNMESMTNLALSQNKLTGSIPS 288

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

TAIR|locus:2041150 BRL2 "BRI1-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 63/163 (38%), Positives = 82/163 (50%)

Query:     3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDD 62
             SL    F++N   G +PP+ C   ++LE L L +N+  G+IP  +S C  LR I LSL+ 
Sbjct:   351 SLRIADFSSNRFSGVIPPDLCPGAASLEELRLPDNLVTGEIPPAISQCSELRTIDLSLNY 410

Query:    63 FSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPXXXXXX 122
              +GTIP EIGN+ KL +     N + GEIP E+G L  L+ L L NN LT  IP      
Sbjct:   411 LNGTIPPEIGNLQKLEQFIAWYNNIAGEIPPEIGKLQNLKDLILNNNQLTGEIPPEFFNC 470

Query:   123 XXXXXXXXXXXXXTGGIIPSLLGNQSSLQTLYLSYNQLSGPIP 165
                          TG + P   G  S L  L L  N  +G IP
Sbjct:   471 SNIEWVSFTSNRLTGEV-PKDFGILSRLAVLQLGNNNFTGEIP 512

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0010051 "xylem and phloem pattern formation" evidence=IMP

GO:0010233 "phloem transport" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009734 "auxin mediated signaling pathway" evidence=RCA;IMP

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IMP

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00028427001 SubName- Full=Chromosome chr10 scaffold_43, whole genome shotgun sequence; (543 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	180
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-31
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-28
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-24
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-23
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-23
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-21
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-19
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-19
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-17
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-14
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.001

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  118 bits (298), Expect = 2e-31
 Identities = 73/167 (43%), Positives = 99/167 (59%), Gaps = 4/167 (2%)

Query: 2   SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLD 61
           SSL  +  +NN   G +P      + NLE+L L NNM  G+IP+ + +   L+ + L  +
Sbjct: 118 SSLRYLNLSNNNFTGSIPRGS---IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGN 174

Query: 62  DFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFN 121
              G IP  + N+T L  L L  NQL G+IP ELG +  L+ ++L  N L+  IP  I  
Sbjct: 175 VLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG 234

Query: 122 LSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFI 168
           L+SL++LDL  NNLTG  IPS LGN  +LQ L+L  N+LSGPIP  I
Sbjct: 235 LTSLNHLDLVYNNLTGP-IPSSLGNLKNLQYLFLYQNKLSGPIPPSI 280

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  109 bits (274), Expect = 4e-28
 Identities = 71/164 (43%), Positives = 95/164 (57%), Gaps = 2/164 (1%)

Query: 2   SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLD 61
           SSL  +    N L G++P +  N L++LE L L +N   G+IP  L   K L+ I L  +
Sbjct: 164 SSLKVLDLGGNVLVGKIPNSLTN-LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN 222

Query: 62  DFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFN 121
           + SG IP EIG +T L  L L  N L G IP  LGNL  L+ L+L  N L+  IP SIF+
Sbjct: 223 NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS 282

Query: 122 LSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIP 165
           L  L +LDLS N+L+G  IP L+    +L+ L+L  N  +G IP
Sbjct: 283 LQKLISLDLSDNSLSGE-IPELVIQLQNLEILHLFSNNFTGKIP 325

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 97.6 bits (243), Expect = 4e-24
 Identities = 67/161 (41%), Positives = 86/161 (53%), Gaps = 3/161 (1%)

Query: 6   SIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSG 65
           +I  +NN L G +P +     S+L  L L NN F G IP        L  + LS +  SG
Sbjct: 97  TINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPN--LETLDLSNNMLSG 154

Query: 66  TIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSL 125
            IP +IG+ + L  L L GN L G+IP  L NL  LE L L +N L   IP  +  + SL
Sbjct: 155 EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSL 214

Query: 126 SNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPS 166
             + L  NNL+G  IP  +G  +SL  L L YN L+GPIPS
Sbjct: 215 KWIYLGYNNLSGE-IPYEIGGLTSLNHLDLVYNNLTGPIPS 254

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 95.7 bits (238), Expect = 2e-23
 Identities = 68/165 (41%), Positives = 87/165 (52%), Gaps = 2/165 (1%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           M SL  I    N L GE+P      L++L  L L  N   G IPS+L N K L+ + L  
Sbjct: 211 MKSLKWIYLGYNNLSGEIP-YEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQ 269

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           +  SG IP  I ++ KLI L L  N L GEIPE +  L  LE+L L +N  T  IP ++ 
Sbjct: 270 NKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT 329

Query: 121 NLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIP 165
           +L  L  L L  N  +G  IP  LG  ++L  L LS N L+G IP
Sbjct: 330 SLPRLQVLQLWSNKFSGE-IPKNLGKHNNLTVLDLSTNNLTGEIP 373

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 94.5 bits (235), Expect = 6e-23
 Identities = 70/188 (37%), Positives = 102/188 (54%), Gaps = 25/188 (13%)

Query: 2   SSLLSIRFTNNTLFGELPPNFC------------NHLS-----------NLESLFLKNNM 38
            SL  +R  +N+  GELP  F             N+L            +L+ L L  N 
Sbjct: 404 RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK 463

Query: 39  FHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNL 98
           F G +P      KRL N+ LS + FSG +P+++G++++L++L L  N+L GEIP+EL + 
Sbjct: 464 FFGGLPD-SFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSC 522

Query: 99  AELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYN 158
            +L  L L +N L+  IP+S   +  LS LDLS N L+G  IP  LGN  SL  + +S+N
Sbjct: 523 KKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGE-IPKNLGNVESLVQVNISHN 581

Query: 159 QLSGPIPS 166
            L G +PS
Sbjct: 582 HLHGSLPS 589

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 90.7 bits (225), Expect = 2e-21
 Identities = 60/165 (36%), Positives = 91/165 (55%), Gaps = 2/165 (1%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           ++SL  +    N L G +P +  N L NL+ LFL  N   G IP ++ + ++L ++ LS 
Sbjct: 235 LTSLNHLDLVYNNLTGPIPSSLGN-LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSD 293

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           +  SG IP+ +  +  L  L+L  N   G+IP  L +L  L++L L +N  +  IP ++ 
Sbjct: 294 NSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG 353

Query: 121 NLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIP 165
             ++L+ LDLS NNLTG  IP  L +  +L  L L  N L G IP
Sbjct: 354 KHNNLTVLDLSTNNLTGE-IPEGLCSSGNLFKLILFSNSLEGEIP 397

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 83.7 bits (207), Expect = 3e-19
 Identities = 67/191 (35%), Positives = 95/191 (49%), Gaps = 26/191 (13%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +  L+S+  ++N+L GE+P      L NLE L L +N F GKIP  L++  RL+ + L  
Sbjct: 283 LQKLISLDLSDNSLSGEIP-ELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWS 341

Query: 61  DDFSGTIPKEIG---NVT---------------------KLIRLYLRGNQLQGEIPEELG 96
           + FSG IPK +G   N+T                      L +L L  N L+GEIP+ LG
Sbjct: 342 NKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLG 401

Query: 97  NLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLS 156
               L  + LQ+N  +  +PS    L  +  LD+S NNL G I  S   +  SLQ L L+
Sbjct: 402 ACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRI-NSRKWDMPSLQMLSLA 460

Query: 157 YNQLSGPIPSF 167
            N+  G +P  
Sbjct: 461 RNKFFGGLPDS 471

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 83.0 bits (205), Expect = 6e-19
 Identities = 61/169 (36%), Positives = 84/169 (49%), Gaps = 24/169 (14%)

Query: 23  CNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEI----------- 71
           CN+ S + S+ L      GKI S +     ++ I+LS +  SG IP +I           
Sbjct: 65  CNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLN 124

Query: 72  ------------GNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSI 119
                       G++  L  L L  N L GEIP ++G+ + L++L L  N L   IP+S+
Sbjct: 125 LSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL 184

Query: 120 FNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFI 168
            NL+SL  L L+ N L G  IP  LG   SL+ +YL YN LSG IP  I
Sbjct: 185 TNLTSLEFLTLASNQLVGQ-IPRELGQMKSLKWIYLGYNNLSGEIPYEI 232

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 76.8 bits (189), Expect = 9e-17
 Identities = 55/156 (35%), Positives = 76/156 (48%), Gaps = 3/156 (1%)

Query: 11  NNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKE 70
           +N   GE+P N   H +NL  L L  N   G+IP  L +   L  + L  +   G IPK 
Sbjct: 341 SNKFSGEIPKNLGKH-NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKS 399

Query: 71  IGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDL 130
           +G    L R+ L+ N   GE+P E   L  +  L + NN L   I S  +++ SL  L L
Sbjct: 400 LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSL 459

Query: 131 SVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPS 166
           + N   GG +P   G+   L+ L LS NQ SG +P 
Sbjct: 460 ARNKFFGG-LPDSFGS-KRLENLDLSRNQFSGAVPR 493

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 68.3 bits (167), Expect = 7e-14
 Identities = 33/91 (36%), Positives = 51/91 (56%)

Query: 29  LESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQ 88
           ++ L L N    G IP+ +S  + L++I+LS +   G IP  +G++T L  L L  N   
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 89  GEIPEELGNLAELEMLWLQNNFLTRAIPSSI 119
           G IPE LG L  L +L L  N L+  +P+++
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 66.0 bits (161), Expect = 5e-13
 Identities = 55/168 (32%), Positives = 78/168 (46%), Gaps = 27/168 (16%)

Query: 1   MSSLLSIRFTNNTLFGELP----------------------PNFCNHLSNLESLFLKNNM 38
           M SL  +    N  FG LP                      P     LS L  L L  N 
Sbjct: 451 MPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENK 510

Query: 39  FHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNL 98
             G+IP  LS+CK+L ++ LS +  SG IP     +  L +L L  NQL GEIP+ LGN+
Sbjct: 511 LSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNV 570

Query: 99  AELEMLWLQNNFLTRAIPSS----IFNLSSLS-NLDLSVNNLTGGIIP 141
             L  + + +N L  ++PS+      N S+++ N+DL   + T G+ P
Sbjct: 571 ESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPP 618

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 63.7 bits (155), Expect = 3e-12
 Identities = 34/83 (40%), Positives = 50/83 (60%), Gaps = 2/83 (2%)

Query: 85  NQ-LQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSL 143
           NQ L+G IP ++  L  L+ + L  N +   IP S+ +++SL  LDLS N+  G I P  
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI-PES 485

Query: 144 LGNQSSLQTLYLSYNQLSGPIPS 166
           LG  +SL+ L L+ N LSG +P+
Sbjct: 486 LGQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.9 bits (153), Expect = 5e-12
 Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 11  NNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKE 70
           N  L G +P N  + L +L+S+ L  N   G IP +L +   L  + LS + F+G+IP+ 
Sbjct: 427 NQGLRGFIP-NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES 485

Query: 71  IGNVTKLIRLYLRGNQLQGEIPEELG 96
           +G +T L  L L GN L G +P  LG
Sbjct: 486 LGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 59.5 bits (144), Expect = 8e-11
 Identities = 51/144 (35%), Positives = 70/144 (48%), Gaps = 24/144 (16%)

Query: 46  TLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEEL---------- 95
           T +N  R+ +I LS  + SG I   I  +  +  + L  NQL G IP+++          
Sbjct: 64  TCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYL 123

Query: 96  -------------GNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPS 142
                        G++  LE L L NN L+  IP+ I + SSL  LDL  N L G  IP+
Sbjct: 124 NLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK-IPN 182

Query: 143 LLGNQSSLQTLYLSYNQLSGPIPS 166
            L N +SL+ L L+ NQL G IP 
Sbjct: 183 SLTNLTSLEFLTLASNQLVGQIPR 206

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 58.3 bits (141), Expect = 2e-10
 Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 3/90 (3%)

Query: 58  LSLDD--FSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAI 115
           L LD+    G IP +I  +  L  + L GN ++G IP  LG++  LE+L L  N    +I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 116 PSSIFNLSSLSNLDLSVNNLTGGIIPSLLG 145
           P S+  L+SL  L+L+ N+L+G  +P+ LG
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGR-VPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.3 bits (128), Expect = 1e-08
 Identities = 28/62 (45%), Positives = 38/62 (61%), Gaps = 1/62 (1%)

Query: 104 LWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGP 163
           L L N  L   IP+ I  L  L +++LS N++ G I PSL G+ +SL+ L LSYN  +G 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL-GSITSLEVLDLSYNSFNGS 481

Query: 164 IP 165
           IP
Sbjct: 482 IP 483

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 51.0 bits (122), Expect = 6e-08
 Identities = 41/103 (39%), Positives = 58/103 (56%), Gaps = 4/103 (3%)

Query: 73  NVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLS-SLSNLDLS 131
           N ++++ + L G  + G+I   +  L  ++ + L NN L+  IP  IF  S SL  L+LS
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126

Query: 132 VNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKFSL 174
            NN TG  IP   G+  +L+TL LS N LSG IP+ I    SL
Sbjct: 127 NNNFTGS-IPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSL 166

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 42.9 bits (101), Expect = 4e-05
 Identities = 23/62 (37%), Positives = 32/62 (51%)

Query: 115 IPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKFSL 174
           I S+IF L  +  ++LS N L+G I   +    SSL+ L LS N  +G IP   +     
Sbjct: 85  ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLET 144

Query: 175 LD 176
           LD
Sbjct: 145 LD 146

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.9 bits (89), Expect = 1e-04
 Identities = 26/60 (43%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 101 LEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQL 160
           L+ L L NN LT     +   L +L  LDLS NNLT  I P       SL++L LS N L
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 34/114 (29%), Positives = 47/114 (41%), Gaps = 16/114 (14%)

Query: 59  SLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGE----IPEELGNLAELEMLWLQNNFLTR- 113
           S +  +  +         L  L L  N +       + E L     LE+L L NN LT  
Sbjct: 153 SCEALAKALRA----NRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDE 208

Query: 114 ---AIPSSIFNLSSLSNLDLSVNNLTGGII----PSLLGNQSSLQTLYLSYNQL 160
              A+  ++ +L SL  L+L  NNLT         +LL    SL TL LS N +
Sbjct: 209 GASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	180
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.85
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.85
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.79
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.75
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.75
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.61
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.55
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.53
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.51
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.5
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.45
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.42
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.42
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.38
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.37
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.36
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.35
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.34
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.23
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.23
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.23
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.2
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.2
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.17
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.16
PLN03150	623	hypothetical protein; Provisional	99.16
PLN03150	623	hypothetical protein; Provisional	99.16
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.15
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.13
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.11
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.09
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.05
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.99
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.98
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.96
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.82
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.8
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.73
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.73
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.67
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.54
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.53
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.53
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.48
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.46
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.41
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.39
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.39
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.37
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.37
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.34
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.32
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.26
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.19
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.17
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.12
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.09
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.92
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.87
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.8
PRK15386	426	type III secretion protein GogB; Provisional	97.75
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.68
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.62
PRK15386	426	type III secretion protein GogB; Provisional	97.4
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.33
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.31
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.87
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.18
KOG4341	483	consensus F-box protein containing LRR [General fu	96.09
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.01
KOG4341	483	consensus F-box protein containing LRR [General fu	95.32
smart00370	26	LRR Leucine-rich repeats, outliers.	95.01
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	95.01
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.59
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.58
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	93.98
KOG4308	478	consensus LRR-containing protein [Function unknown	93.75
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.57
KOG4308	478	consensus LRR-containing protein [Function unknown	88.27
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	81.17

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.85  E-value=5.8e-21  Score=155.61  Aligned_cols=162  Identities=41%  Similarity=0.590  Sum_probs=73.7

Q ss_pred             CceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEe
Q 030257            3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL   82 (180)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l   82 (180)
                      +|++|++++|.+.+.+|..+. ++++|++|++++|.+.+..|..+.++++|++|++++|.+....|..+..+.+|+++++
T Consensus       141 ~L~~L~Ls~n~~~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  219 (968)
T PLN00113        141 NLETLDLSNNMLSGEIPNDIG-SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL  219 (968)
T ss_pred             CCCEEECcCCcccccCChHHh-cCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence            344444444444333333332 2555555555555544444444555555555555555444444444444555555555


Q ss_pred             eCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccC
Q 030257           83 RGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSG  162 (180)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  162 (180)
                      .+|.+....|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+. .+..+..+++|+.|++++|.+.+
T Consensus       220 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~  298 (968)
T PLN00113        220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP-IPPSIFSLQKLISLDLSDNSLSG  298 (968)
T ss_pred             cCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeecc-CchhHhhccCcCEEECcCCeecc
Confidence            54444434444444444455555544444444444444444444444444444322 23333333444444444444443


Q ss_pred             CCCh
Q 030257          163 PIPS  166 (180)
Q Consensus       163 ~~~~  166 (180)
                      .+|.
T Consensus       299 ~~p~  302 (968)
T PLN00113        299 EIPE  302 (968)
T ss_pred             CCCh
Confidence            3333

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.85  E-value=9.5e-21  Score=154.36  Aligned_cols=167  Identities=43%  Similarity=0.629  Sum_probs=109.7

Q ss_pred             CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (180)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   80 (180)
                      +++|++|++++|.+.+.+|..+.. +++|++|++++|.+.+..|..+..+++|+.|++++|.+....|..+..+++|++|
T Consensus       163 l~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  241 (968)
T PLN00113        163 FSSLKVLDLGGNVLVGKIPNSLTN-LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHL  241 (968)
T ss_pred             CCCCCEEECccCcccccCChhhhh-CcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEE
Confidence            457788888888776666665544 7778888887777776677777777777777777777766666667777777777


Q ss_pred             EeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcc
Q 030257           81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQL  160 (180)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~  160 (180)
                      ++.+|.+....|..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+. .+..+..+++|+.|++++|.+
T Consensus       242 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~l~~n~~  320 (968)
T PLN00113        242 DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE-IPELVIQLQNLEILHLFSNNF  320 (968)
T ss_pred             ECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccC-CChhHcCCCCCcEEECCCCcc
Confidence            7777766655666666666677777766666655555555666666666666655532 444455555555555555555


Q ss_pred             cCCCChhhh
Q 030257          161 SGPIPSFIL  169 (180)
Q Consensus       161 ~~~~~~~~~  169 (180)
                      .+.+|..+.
T Consensus       321 ~~~~~~~~~  329 (968)
T PLN00113        321 TGKIPVALT  329 (968)
T ss_pred             CCcCChhHh
Confidence            554544443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.79  E-value=6e-21  Score=141.72  Aligned_cols=169  Identities=21%  Similarity=0.220  Sum_probs=147.2

Q ss_pred             CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (180)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   80 (180)
                      |.+++.|+++.|++. .+-.++.-++..|++|+++.|.|....+++|..+++|++|++++|+++...++.|..+..|++|
T Consensus       268 l~kme~l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~L  346 (873)
T KOG4194|consen  268 LEKMEHLNLETNRLQ-AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEEL  346 (873)
T ss_pred             ecccceeecccchhh-hhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhh
Confidence            457788999988887 5656665569999999999999998999999999999999999999998888899999999999


Q ss_pred             EeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCcc---ccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccC
Q 030257           81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIP---SSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSY  157 (180)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~---~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~  157 (180)
                      .+++|.+++....+|.++++|+.||+.+|.+...+.   ..|..+++|+.|++.+|++.. ....++.++.+|+.||+.+
T Consensus       347 nLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~-I~krAfsgl~~LE~LdL~~  425 (873)
T KOG4194|consen  347 NLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKS-IPKRAFSGLEALEHLDLGD  425 (873)
T ss_pred             cccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeee-cchhhhccCcccceecCCC
Confidence            999999987666789999999999999999865443   357789999999999999874 3667899999999999999


Q ss_pred             CcccCCCChhhhhh
Q 030257          158 NQLSGPIPSFILCK  171 (180)
Q Consensus       158 n~~~~~~~~~~~~~  171 (180)
                      |.+-+..|+.|-.+
T Consensus       426 NaiaSIq~nAFe~m  439 (873)
T KOG4194|consen  426 NAIASIQPNAFEPM  439 (873)
T ss_pred             Ccceeecccccccc
Confidence            99998888877655

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.75  E-value=5.9e-19  Score=131.32  Aligned_cols=173  Identities=20%  Similarity=0.203  Sum_probs=107.3

Q ss_pred             CceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEe
Q 030257            3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL   82 (180)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l   82 (180)
                      ++++|++++|.++ .+..+.|.++.+|.+|.++.|.++..-+.+|..+++|+.|++..|++..+..-.|.++++|+.+.+
T Consensus       174 ni~~L~La~N~It-~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl  252 (873)
T KOG4194|consen  174 NIKKLNLASNRIT-TLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL  252 (873)
T ss_pred             CceEEeecccccc-ccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence            4555555555554 344444444555555555555555444444555666666666666555333445555666666666


Q ss_pred             eCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccC
Q 030257           83 RGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSG  162 (180)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  162 (180)
                      .+|.+......+|..+.+++++++..|++.....+++.++.+|+.|++++|.|... ..+.+..++.|+.|+++.|+++.
T Consensus       253 qrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ri-h~d~WsftqkL~~LdLs~N~i~~  331 (873)
T KOG4194|consen  253 QRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRI-HIDSWSFTQKLKELDLSSNRITR  331 (873)
T ss_pred             hhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhee-ecchhhhcccceeEecccccccc
Confidence            66655533444566667777777777777666666777888888888888888743 55666778888889998888886


Q ss_pred             CCChhhhhhccccccc
Q 030257          163 PIPSFILCKFSLLDNI  178 (180)
Q Consensus       163 ~~~~~~~~~~~~~~~l  178 (180)
                      ..+..+..+ +.++.|
T Consensus       332 l~~~sf~~L-~~Le~L  346 (873)
T KOG4194|consen  332 LDEGSFRVL-SQLEEL  346 (873)
T ss_pred             CChhHHHHH-HHhhhh
Confidence            555555444 444433

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.75  E-value=1.3e-20  Score=120.57  Aligned_cols=162  Identities=27%  Similarity=0.476  Sum_probs=141.3

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   81 (180)
                      ...+.|.++.|.++ .+|+.+.. +.+|+.|++.+|+++ .+|.++..+++|++|.+.-|++. ..|..|+.++.|+++|
T Consensus        33 s~ITrLtLSHNKl~-~vppnia~-l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld  108 (264)
T KOG0617|consen   33 SNITRLTLSHNKLT-VVPPNIAE-LKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD  108 (264)
T ss_pred             hhhhhhhcccCcee-ecCCcHHH-hhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence            45667888999987 88999987 999999999999998 88899999999999999999887 7899999999999999


Q ss_pred             eeCCcCCC-CcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcc
Q 030257           82 LRGNQLQG-EIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQL  160 (180)
Q Consensus        82 l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~  160 (180)
                      ++.|.+.. ..|..|-.++.|+.+.+++|.+. ..|...+.+.+|+.|.+.+|++.  .+|..++.+..|+.|++.+|.+
T Consensus       109 ltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll--~lpkeig~lt~lrelhiqgnrl  185 (264)
T KOG0617|consen  109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL--SLPKEIGDLTRLRELHIQGNRL  185 (264)
T ss_pred             ccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh--hCcHHHHHHHHHHHHhccccee
Confidence            99998764 46777778889999999999886 56778889999999999999876  4788899999999999999999


Q ss_pred             cCCCChhhhhh
Q 030257          161 SGPIPSFILCK  171 (180)
Q Consensus       161 ~~~~~~~~~~~  171 (180)
                      + .+|..++.+
T Consensus       186 ~-vlppel~~l  195 (264)
T KOG0617|consen  186 T-VLPPELANL  195 (264)
T ss_pred             e-ecChhhhhh
Confidence            8 666666554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.61  E-value=2.5e-17  Score=124.14  Aligned_cols=167  Identities=26%  Similarity=0.361  Sum_probs=129.1

Q ss_pred             CceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEe
Q 030257            3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL   82 (180)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l   82 (180)
                      ++-.|++++|++. .+|...+-++..|-.|++++|.+. .+|+....+..|++|.+++|.+.......+..+.+|++|++
T Consensus       127 n~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhm  204 (1255)
T KOG0444|consen  127 NSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHM  204 (1255)
T ss_pred             CcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhc
Confidence            4556777777775 677777777777888888888776 66777778888888888888876555566677778888888


Q ss_pred             eCCcCC-CCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCccc
Q 030257           83 RGNQLQ-GEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS  161 (180)
Q Consensus        83 ~~~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  161 (180)
                      +++..+ ..+|..+..+.+|..++++.|.+. ..|+.+..+++|+.|++++|.++  ++........++++|+++.|+++
T Consensus       205 s~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it--eL~~~~~~W~~lEtLNlSrNQLt  281 (1255)
T KOG0444|consen  205 SNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT--ELNMTEGEWENLETLNLSRNQLT  281 (1255)
T ss_pred             ccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee--eeeccHHHHhhhhhhccccchhc
Confidence            877633 236777788889999999999887 57888888999999999999988  34555666778999999999988


Q ss_pred             CCCChhhhhhcccc
Q 030257          162 GPIPSFILCKFSLL  175 (180)
Q Consensus       162 ~~~~~~~~~~~~~~  175 (180)
                       ..|..++.+.++.
T Consensus       282 -~LP~avcKL~kL~  294 (1255)
T KOG0444|consen  282 -VLPDAVCKLTKLT  294 (1255)
T ss_pred             -cchHHHhhhHHHH
Confidence             6888877665543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.55  E-value=9.7e-17  Score=102.92  Aligned_cols=143  Identities=30%  Similarity=0.460  Sum_probs=126.8

Q ss_pred             CCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEE
Q 030257           26 LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLW  105 (180)
Q Consensus        26 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~  105 (180)
                      +.+++.|.++.|.+. ..|..+..+.+|+.|.+++|++. ..|..+++++.|+.++++.|++. ..|..|+.++.|+.++
T Consensus        32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld  108 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD  108 (264)
T ss_pred             hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence            678888999999988 67777899999999999999998 67888999999999999999987 6899999999999999


Q ss_pred             ecCCcCCC-CccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCCChhhhhhccc
Q 030257          106 LQNNFLTR-AIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKFSL  174 (180)
Q Consensus       106 l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~  174 (180)
                      +..|.+.+ ..|..|..+..|+.|.+++|++.  .+|.-++++++|+.|.+++|.+. ..|+.++.+.++
T Consensus       109 ltynnl~e~~lpgnff~m~tlralyl~dndfe--~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~l  175 (264)
T KOG0617|consen  109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE--ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRL  175 (264)
T ss_pred             ccccccccccCCcchhHHHHHHHHHhcCCCcc--cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHH
Confidence            99998864 56788888999999999999987  57888999999999999999988 588888776544

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.53  E-value=6.3e-16  Score=110.36  Aligned_cols=62  Identities=21%  Similarity=0.301  Sum_probs=51.9

Q ss_pred             CceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecc-ccccc
Q 030257            3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL-DDFSG   65 (180)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~   65 (180)
                      ....+.+..|.++ .+|...|+.++.|+.|+++.|+|+...|++|.+++.+..|.+.+ |+|+.
T Consensus        68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~  130 (498)
T KOG4237|consen   68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD  130 (498)
T ss_pred             cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh
Confidence            4567888888887 89999999999999999999999988889988888887777666 66664

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.51  E-value=6.7e-15  Score=106.42  Aligned_cols=14  Identities=14%  Similarity=0.290  Sum_probs=6.4

Q ss_pred             CCccEEEecccccc
Q 030257           51 KRLRNISLSLDDFS   64 (180)
Q Consensus        51 ~~L~~L~l~~~~~~   64 (180)
                      ++|+.+++.+|.++
T Consensus       137 ~~L~~L~L~~n~l~  150 (319)
T cd00116         137 PALEKLVLGRNRLE  150 (319)
T ss_pred             CCceEEEcCCCcCC
Confidence            44444444444443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.50  E-value=1.8e-15  Score=114.35  Aligned_cols=157  Identities=31%  Similarity=0.441  Sum_probs=112.9

Q ss_pred             CCCceEEEeeCCeecc-cCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccE
Q 030257            1 MSSLLSIRFTNNTLFG-ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIR   79 (180)
Q Consensus         1 l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   79 (180)
                      +|.|+.+.+.+|++.. -+|.++|+ +..|+.|+++.|++. ..|..+...+++-.|++++|.+.++....+.++.-|-.
T Consensus        77 Lp~LRsv~~R~N~LKnsGiP~diF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLf  154 (1255)
T KOG0444|consen   77 LPRLRSVIVRDNNLKNSGIPTDIFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLF  154 (1255)
T ss_pred             chhhHHHhhhccccccCCCCchhcc-cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhh
Confidence            4566777777776543 47888887 888888888888876 67777777777778888888887665566677777778


Q ss_pred             EEeeCCcCCCCcchhhcCCCcccEEEecCCcCCC-------------------------CccccccCCCCCCeEEcccCc
Q 030257           80 LYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTR-------------------------AIPSSIFNLSSLSNLDLSVNN  134 (180)
Q Consensus        80 l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-------------------------~~~~~l~~~~~L~~L~l~~~~  134 (180)
                      |++++|++. ..|..++.+..|++|.+++|++..                         .+|..+-.+.+|..+|++.|.
T Consensus       155 LDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~  233 (1255)
T KOG0444|consen  155 LDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN  233 (1255)
T ss_pred             hccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC
Confidence            888888776 456667777777777777776532                         233444455566677777777


Q ss_pred             CCCCCCcccccCCCCccEEEccCCcccC
Q 030257          135 LTGGIIPSLLGNQSSLQTLYLSYNQLSG  162 (180)
Q Consensus       135 ~~~~~~~~~~~~~~~L~~l~l~~n~~~~  162 (180)
                      +.  ..|..+..+.+|+.|++++|.++.
T Consensus       234 Lp--~vPecly~l~~LrrLNLS~N~ite  259 (1255)
T KOG0444|consen  234 LP--IVPECLYKLRNLRRLNLSGNKITE  259 (1255)
T ss_pred             CC--cchHHHhhhhhhheeccCcCceee
Confidence            76  467777778888888888888773

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.45  E-value=4.3e-14  Score=102.22  Aligned_cols=167  Identities=23%  Similarity=0.222  Sum_probs=101.9

Q ss_pred             CCceEEEeeCCeecc--c---CchhhhhcCCCccEEEcccccCCCCCCccccCCCC---ccEEEeccccccc----ccch
Q 030257            2 SSLLSIRFTNNTLFG--E---LPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKR---LRNISLSLDDFSG----TIPK   69 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~--~---~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~---L~~L~l~~~~~~~----~~~~   69 (180)
                      ++++++++.++.+.+  .   .....+..+++|+.|++++|.+....+..+..+..   |++|++++|.+..    ....
T Consensus        51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~  130 (319)
T cd00116          51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK  130 (319)
T ss_pred             CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence            457777777766541  0   01123334778888888888776444444444444   8888888887652    2223


Q ss_pred             hhhcc-CCccEEEeeCCcCCCC----cchhhcCCCcccEEEecCCcCCCCc----cccccCCCCCCeEEcccCcCCCCC-
Q 030257           70 EIGNV-TKLIRLYLRGNQLQGE----IPEELGNLAELEMLWLQNNFLTRAI----PSSIFNLSSLSNLDLSVNNLTGGI-  139 (180)
Q Consensus        70 ~~~~l-~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~-  139 (180)
                      .+..+ ++|+++++.+|.++..    ....+..+.+|+.+++++|.+.+..    +..+...++|++|++++|.+.+.. 
T Consensus       131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  210 (319)
T cd00116         131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA  210 (319)
T ss_pred             HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH
Confidence            34555 7888888888877632    2234555667888888888776422    223344567888888888765321 


Q ss_pred             --CcccccCCCCccEEEccCCcccCCCChhh
Q 030257          140 --IPSLLGNQSSLQTLYLSYNQLSGPIPSFI  168 (180)
Q Consensus       140 --~~~~~~~~~~L~~l~l~~n~~~~~~~~~~  168 (180)
                        +...+..+++|+.|++++|.+.+.....+
T Consensus       211 ~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l  241 (319)
T cd00116         211 SALAETLASLKSLEVLNLGDNNLTDAGAAAL  241 (319)
T ss_pred             HHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence              22345566778888888887765333333

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=99.42  E-value=3.7e-12  Score=105.74  Aligned_cols=80  Identities=23%  Similarity=0.250  Sum_probs=40.4

Q ss_pred             CceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEe
Q 030257            3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL   82 (180)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l   82 (180)
                      +|+.|++.++.+. .++..+. .+++|+.++++++......|. +..+++|+.|++.+|......|..+..+.+|+.|++
T Consensus       612 ~L~~L~L~~s~l~-~L~~~~~-~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L  688 (1153)
T PLN03210        612 NLVKLQMQGSKLE-KLWDGVH-SLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM  688 (1153)
T ss_pred             CCcEEECcCcccc-ccccccc-cCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence            4445555554443 3333332 355556666655433323332 445556666666655544445555555566666666


Q ss_pred             eCC
Q 030257           83 RGN   85 (180)
Q Consensus        83 ~~~   85 (180)
                      .+|
T Consensus       689 ~~c  691 (1153)
T PLN03210        689 SRC  691 (1153)
T ss_pred             CCC
Confidence            554

syringae 6; Provisional

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.42  E-value=2.6e-14  Score=111.49  Aligned_cols=154  Identities=32%  Similarity=0.458  Sum_probs=120.0

Q ss_pred             CCceEEEeeCCeecccCchhhhh-------------------------cCCCccEEEcccccCCCCCCccccCCCCccEE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCN-------------------------HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNI   56 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~-------------------------~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L   56 (180)
                      ++|++|++..|.+. .+|..++.                         .++.|+.|.+.+|.+++..-..+.++.+|+.|
T Consensus       310 ~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVL  388 (1081)
T KOG0618|consen  310 KSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVL  388 (1081)
T ss_pred             ceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeee
Confidence            56788888888775 55554432                         12346777788888887777778899999999


Q ss_pred             EecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCC
Q 030257           57 SLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT  136 (180)
Q Consensus        57 ~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  136 (180)
                      ++++|++.......+.++..|++|++++|.++ ..|..+..+..|++|...+|.+. .+| .+..++.|+.+|++.|+++
T Consensus       389 hLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~  465 (1081)
T KOG0618|consen  389 HLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLS  465 (1081)
T ss_pred             eecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhh
Confidence            99999998666667888999999999999987 56788888889999988888886 355 6677899999999999887


Q ss_pred             CCCCcccccCCCCccEEEccCCcc
Q 030257          137 GGIIPSLLGNQSSLQTLYLSYNQL  160 (180)
Q Consensus       137 ~~~~~~~~~~~~~L~~l~l~~n~~  160 (180)
                      ...++..... ++|+.||+++|.-
T Consensus       466 ~~~l~~~~p~-p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  466 EVTLPEALPS-PNLKYLDLSGNTR  488 (1081)
T ss_pred             hhhhhhhCCC-cccceeeccCCcc
Confidence            5545544433 7899999999974

>PLN03210 Resistant to P

Probab=99.38  E-value=6.5e-12  Score=104.33  Aligned_cols=59  Identities=22%  Similarity=0.345  Sum_probs=31.0

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccc
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDD   62 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~   62 (180)
                      ++|+.++++++...+.+|.  +..+++|+.|++.+|......|..+..+++|+.|++++|.
T Consensus       634 ~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~  692 (1153)
T PLN03210        634 TGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCE  692 (1153)
T ss_pred             CCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCC
Confidence            4566666665543334442  2235566666666554444455555555555555555543

syringae 6; Provisional

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.37  E-value=2.9e-15  Score=107.46  Aligned_cols=161  Identities=31%  Similarity=0.445  Sum_probs=78.6

Q ss_pred             CceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEe
Q 030257            3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL   82 (180)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l   82 (180)
                      ++++++++.|.+. .++.+++. +-.++.++-.+|++. ..|..+..+.++..+++.++.+. ..|+....+..|++++.
T Consensus       115 ~l~~l~~s~n~~~-el~~~i~~-~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~  190 (565)
T KOG0472|consen  115 SLVKLDCSSNELK-ELPDSIGR-LLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDC  190 (565)
T ss_pred             hhhhhhcccccee-ecCchHHH-Hhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhccc
Confidence            4555556555554 45555554 555555555555554 44444444444444444444443 22222222444444444


Q ss_pred             eCCcCCCCcchhhcCCCcccEEEecCCcCCC---------------------Ccc-ccccCCCCCCeEEcccCcCCCCCC
Q 030257           83 RGNQLQGEIPEELGNLAELEMLWLQNNFLTR---------------------AIP-SSIFNLSSLSNLDLSVNNLTGGII  140 (180)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~---------------------~~~-~~l~~~~~L~~L~l~~~~~~~~~~  140 (180)
                      ..|-+. ..|+.++.+.+|..+++.+|++..                     ..| +..++++++.+||+.+|+++  +.
T Consensus       191 ~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk--e~  267 (565)
T KOG0472|consen  191 NSNLLE-TLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK--EV  267 (565)
T ss_pred             chhhhh-cCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc--cC
Confidence            444333 233333444444444443333321                     111 22335566666666666665  35


Q ss_pred             cccccCCCCccEEEccCCcccCCCChhhhhh
Q 030257          141 PSLLGNQSSLQTLYLSYNQLSGPIPSFILCK  171 (180)
Q Consensus       141 ~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~  171 (180)
                      |+.+..+++|+.||+++|.++ ..|..++.+
T Consensus       268 Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl  297 (565)
T KOG0472|consen  268 PDEICLLRSLERLDLSNNDIS-SLPYSLGNL  297 (565)
T ss_pred             chHHHHhhhhhhhcccCCccc-cCCcccccc
Confidence            665656666666666666666 355554444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.36  E-value=9.5e-13  Score=86.39  Aligned_cols=125  Identities=22%  Similarity=0.211  Sum_probs=44.2

Q ss_pred             CCCccEEEcccccCCCCCCcccc-CCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEE
Q 030257           26 LSNLESLFLKNNMFHGKIPSTLS-NCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEML  104 (180)
Q Consensus        26 l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l  104 (180)
                      ...+++|++.++.|+.. . .+. .+.+|+.|++++|.+...  +.+..++.|++|++.+|.++.........+++|+.|
T Consensus        18 ~~~~~~L~L~~n~I~~I-e-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTI-E-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL   93 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred             ccccccccccccccccc-c-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence            45677888888877632 2 233 467788888888887643  346777888888888888774322222357788888


Q ss_pred             EecCCcCCCCc-cccccCCCCCCeEEcccCcCCCCCCc--ccccCCCCccEEE
Q 030257          105 WLQNNFLTRAI-PSSIFNLSSLSNLDLSVNNLTGGIIP--SLLGNQSSLQTLY  154 (180)
Q Consensus       105 ~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~l~  154 (180)
                      ++++|.+.+.. ...+..+++|+.|++.+|.+++...-  ..+..+|+|+.||
T Consensus        94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence            88888876522 24556778888888888877643111  1356677777776

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.35  E-value=5.5e-14  Score=101.02  Aligned_cols=153  Identities=29%  Similarity=0.416  Sum_probs=105.4

Q ss_pred             ceEEEeeCCeecccCchhhhhcCC--CccEEEcccccCC-----------------------CCCCccccCCCCccEEEe
Q 030257            4 LLSIRFTNNTLFGELPPNFCNHLS--NLESLFLKNNMFH-----------------------GKIPSTLSNCKRLRNISL   58 (180)
Q Consensus         4 L~~L~l~~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~-----------------------~~~~~~~~~l~~L~~L~l   58 (180)
                      .+.|++++-.++ .+|..+|..-.  -++.++++.|++.                       +..|..+..+++|..|++
T Consensus       364 tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L  442 (565)
T KOG0472|consen  364 TKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDL  442 (565)
T ss_pred             hhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeec
Confidence            445556555555 56766665222  2555666666544                       133344455667777777


Q ss_pred             cccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCC
Q 030257           59 SLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGG  138 (180)
Q Consensus        59 ~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  138 (180)
                      ++|.+. ..|..+..+..|+.++++.|++. ..|........++++-.++|.+....++.+.+|.+|..||+..|++.  
T Consensus       443 ~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq--  518 (565)
T KOG0472|consen  443 SNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ--  518 (565)
T ss_pred             ccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh--
Confidence            777665 45566666767777777777665 45555544455555555666776555667889999999999999997  


Q ss_pred             CCcccccCCCCccEEEccCCccc
Q 030257          139 IIPSLLGNQSSLQTLYLSYNQLS  161 (180)
Q Consensus       139 ~~~~~~~~~~~L~~l~l~~n~~~  161 (180)
                      .+|..++++.+|++|++++|++.
T Consensus       519 ~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  519 QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hCChhhccccceeEEEecCCccC
Confidence            58899999999999999999998

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.34  E-value=1.3e-12  Score=85.75  Aligned_cols=113  Identities=28%  Similarity=0.274  Sum_probs=45.4

Q ss_pred             ccCCCCccEEEecccccccccchhhh-ccCCccEEEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCC
Q 030257           47 LSNCKRLRNISLSLDDFSGTIPKEIG-NVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSL  125 (180)
Q Consensus        47 ~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L  125 (180)
                      +.+..+++.|++.++.++.+  +.+. .+.+++.|++++|.+..  .+.+..++.|+.|++++|.+++........+++|
T Consensus        15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~--l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L   90 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK--LEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNL   90 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred             cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCcc--ccCccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence            34556789999999999844  3454 57899999999999873  3467788999999999999985423233468999


Q ss_pred             CeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCC
Q 030257          126 SNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGP  163 (180)
Q Consensus       126 ~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~  163 (180)
                      ++|++++|.+.+...-..+..+++|+.|++.+|+++..
T Consensus        91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~  128 (175)
T PF14580_consen   91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK  128 (175)
T ss_dssp             -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred             CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch
Confidence            99999999998654445678899999999999999854

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.23  E-value=4.2e-11  Score=94.79  Aligned_cols=147  Identities=25%  Similarity=0.407  Sum_probs=72.2

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   81 (180)
                      ++|++|++.+|.+. .+|..+.   .+|+.|++++|.+. .+|..+.  .+|+.|++++|.+. ..|..+.  .+|+.|+
T Consensus       220 ~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~  289 (754)
T PRK15370        220 GNIKTLYANSNQLT-SIPATLP---DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLS  289 (754)
T ss_pred             cCCCEEECCCCccc-cCChhhh---ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEE
Confidence            35777777777765 5555442   24555666666554 3333322  24555555555544 2232221  2445555


Q ss_pred             eeCCcCCCCcchhhc-------------------CCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcc
Q 030257           82 LRGNQLQGEIPEELG-------------------NLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPS  142 (180)
Q Consensus        82 l~~~~~~~~~~~~~~-------------------~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  142 (180)
                      +++|.++. .|..+.                   -.++|+.|++++|.++. +|..+.  ++|+.|++++|.++  .+|.
T Consensus       290 Ls~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~--~LP~  363 (754)
T PRK15370        290 VYDNSIRT-LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT--VLPE  363 (754)
T ss_pred             CCCCcccc-CcccchhhHHHHHhcCCccccCCccccccceeccccCCcccc-CChhhc--CcccEEECCCCCCC--cCCh
Confidence            55444431 111110                   11345556666665543 333222  46666777766665  2343


Q ss_pred             cccCCCCccEEEccCCcccCCCChh
Q 030257          143 LLGNQSSLQTLYLSYNQLSGPIPSF  167 (180)
Q Consensus       143 ~~~~~~~L~~l~l~~n~~~~~~~~~  167 (180)
                      .+  .++|+.|++++|.++ .+|..
T Consensus       364 ~l--p~~L~~LdLs~N~Lt-~LP~~  385 (754)
T PRK15370        364 TL--PPTITTLDVSRNALT-NLPEN  385 (754)
T ss_pred             hh--cCCcCEEECCCCcCC-CCCHh
Confidence            33  246666666666666 34443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.23  E-value=7.3e-13  Score=103.60  Aligned_cols=151  Identities=27%  Similarity=0.313  Sum_probs=104.9

Q ss_pred             CceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEe
Q 030257            3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL   82 (180)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l   82 (180)
                      .|+.|.+.+|.+++..-+ .+.++.+|++|++++|.+.......+.++..|++|++++|.+. ..|..+..+..|++|..
T Consensus       360 ~Lq~LylanN~Ltd~c~p-~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~a  437 (1081)
T KOG0618|consen  360 ALQELYLANNHLTDSCFP-VLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRA  437 (1081)
T ss_pred             HHHHHHHhcCcccccchh-hhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhh
Confidence            455666777777644322 3445888888888888887444455677888888888888887 56677888888888888


Q ss_pred             eCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCC
Q 030257           83 RGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYN  158 (180)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n  158 (180)
                      .+|.+. .+| .+..++.|+.+|++.|.++..........++|++||+++|.-... -...+..++.+...++.-+
T Consensus       438 hsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~-d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  438 HSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVF-DHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             cCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccccc-chhhhHHhhhhhheecccC
Confidence            888876 466 667788888888888888654333333347888888888852211 2234556666677766666

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.23  E-value=4e-11  Score=94.90  Aligned_cols=148  Identities=28%  Similarity=0.487  Sum_probs=105.1

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   81 (180)
                      ++++.|++++|.+. .+|..++   .+|++|++++|.+. .+|..+.  .+|+.|++++|.+. ..|..+.  .+|+.|+
T Consensus       199 ~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~  268 (754)
T PRK15370        199 EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLD  268 (754)
T ss_pred             cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEE
Confidence            46889999999987 6887764   58999999999987 5565443  47999999999988 4555443  5799999


Q ss_pred             eeCCcCCCCcchhhcCCCcccEEEecCCcCCCCcccccc-------------------CCCCCCeEEcccCcCCCCCCcc
Q 030257           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-------------------NLSSLSNLDLSVNNLTGGIIPS  142 (180)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~-------------------~~~~L~~L~l~~~~~~~~~~~~  142 (180)
                      +++|.+. ..|..+.  ++|+.|++++|.++. +|..+.                   -.++|+.|++++|.++.  ++.
T Consensus       269 Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~--LP~  342 (754)
T PRK15370        269 LFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS--LPA  342 (754)
T ss_pred             CcCCccC-ccccccC--CCCcEEECCCCcccc-CcccchhhHHHHHhcCCccccCCccccccceeccccCCcccc--CCh
Confidence            9999987 4565442  589999999998874 232211                   11356666666666652  343


Q ss_pred             cccCCCCccEEEccCCcccCCCChhh
Q 030257          143 LLGNQSSLQTLYLSYNQLSGPIPSFI  168 (180)
Q Consensus       143 ~~~~~~~L~~l~l~~n~~~~~~~~~~  168 (180)
                      .+  .++|+.|++++|.+. .+|..+
T Consensus       343 ~l--~~sL~~L~Ls~N~L~-~LP~~l  365 (754)
T PRK15370        343 SL--PPELQVLDVSKNQIT-VLPETL  365 (754)
T ss_pred             hh--cCcccEEECCCCCCC-cCChhh
Confidence            33  257888888888877 456543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.20  E-value=7.4e-11  Score=93.31  Aligned_cols=83  Identities=34%  Similarity=0.344  Sum_probs=51.2

Q ss_pred             CccEEEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEc
Q 030257           76 KLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYL  155 (180)
Q Consensus        76 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l  155 (180)
                      +|+.|++++|.+.. .|..   .++|+.|++++|.+.. +|..   ..+|+.|++++|.++  .+|..+..+++|+.+++
T Consensus       383 ~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt--~LP~sl~~L~~L~~LdL  452 (788)
T PRK15387        383 GLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT--RLPESLIHLSSETTVNL  452 (788)
T ss_pred             ccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc--ccChHHhhccCCCeEEC
Confidence            34555555555442 2221   2345666666666553 3332   235667777777776  36777778888899999


Q ss_pred             cCCcccCCCChhh
Q 030257          156 SYNQLSGPIPSFI  168 (180)
Q Consensus       156 ~~n~~~~~~~~~~  168 (180)
                      ++|++++.++..+
T Consensus       453 s~N~Ls~~~~~~L  465 (788)
T PRK15387        453 EGNPLSERTLQAL  465 (788)
T ss_pred             CCCCCCchHHHHH
Confidence            9999887776655

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.20  E-value=7.9e-13  Score=94.83  Aligned_cols=169  Identities=22%  Similarity=0.217  Sum_probs=115.4

Q ss_pred             CCCceEEEeeCCeecccCchhhhhcCCCccEEEccc-ccCCCCCCcccc------------------------CCCCccE
Q 030257            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKN-NMFHGKIPSTLS------------------------NCKRLRN   55 (180)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~------------------------~l~~L~~   55 (180)
                      +++|+.|+++.|.+. .+.++.|.+++.+.+|.+.+ |+|++...++|.                        .++++..
T Consensus        90 l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~l  168 (498)
T KOG4237|consen   90 LHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSL  168 (498)
T ss_pred             hhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcch
Confidence            468999999999997 67777777799988887776 777643333333                        3445555


Q ss_pred             EEecccccccccchhhhccCCccEEEeeCCc-------------------------------------------------
Q 030257           56 ISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQ-------------------------------------------------   86 (180)
Q Consensus        56 L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~-------------------------------------------------   86 (180)
                      |.+.++.+..+....+..+..++.+++-.|.                                                 
T Consensus       169 LslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~  248 (498)
T KOG4237|consen  169 LSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSL  248 (498)
T ss_pred             hcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhH
Confidence            5555554442222233333333333332221                                                 


Q ss_pred             ------------CCCCcch-hhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEE
Q 030257           87 ------------LQGEIPE-ELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTL  153 (180)
Q Consensus        87 ------------~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l  153 (180)
                                  .....|. .|+.+++|+++++++|.+++..+.+|.....+++|.+.+|.+... ...++.++..|++|
T Consensus       249 esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v-~~~~f~~ls~L~tL  327 (498)
T KOG4237|consen  249 ESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFV-SSGMFQGLSGLKTL  327 (498)
T ss_pred             HhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHH-HHHhhhccccceee
Confidence                        0111222 356778999999999999987778899999999999999988632 44578889999999


Q ss_pred             EccCCcccCCCChhhhhh
Q 030257          154 YLSYNQLSGPIPSFILCK  171 (180)
Q Consensus       154 ~l~~n~~~~~~~~~~~~~  171 (180)
                      ++++|+|+...|..|...
T Consensus       328 ~L~~N~it~~~~~aF~~~  345 (498)
T KOG4237|consen  328 SLYDNQITTVAPGAFQTL  345 (498)
T ss_pred             eecCCeeEEEeccccccc
Confidence            999999998888776544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.17  E-value=3.3e-11  Score=65.78  Aligned_cols=60  Identities=38%  Similarity=0.552  Sum_probs=38.0

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccc
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDD   62 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~   62 (180)
                      |+|++|++.+|.+. .+|.+++.++++|++|++++|.+....+.+|.++++|+++++++|+
T Consensus         1 p~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45666666666665 5666666666666666666666665555566666666666666654

...

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=1.4e-11  Score=89.52  Aligned_cols=161  Identities=21%  Similarity=0.175  Sum_probs=101.0

Q ss_pred             CCCceEEEeeCCeeccc-CchhhhhcCCCccEEEcccccCCCCCC-ccccCCCCccEEEecccccccccc-hhhhccCCc
Q 030257            1 MSSLLSIRFTNNTLFGE-LPPNFCNHLSNLESLFLKNNMFHGKIP-STLSNCKRLRNISLSLDDFSGTIP-KEIGNVTKL   77 (180)
Q Consensus         1 l~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L   77 (180)
                      |++++.|+++.|-+..- ....+...+|+|+.|+++.|.+.-... ..-..++.++.|.++.|+++...- .....++++
T Consensus       145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl  224 (505)
T KOG3207|consen  145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSL  224 (505)
T ss_pred             CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcH
Confidence            57788888888766531 235566678888888888887651111 111246788888888888873322 234567888


Q ss_pred             cEEEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCcc-ccccCCCCCCeEEcccCcCCCCCCccc-----ccCCCCcc
Q 030257           78 IRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIP-SSIFNLSSLSNLDLSVNNLTGGIIPSL-----LGNQSSLQ  151 (180)
Q Consensus        78 ~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~~L~  151 (180)
                      +.|++..|...........-+..|+.|++++|.+.+... .....++.|..|+++.+.+.+...++.     ....++|+
T Consensus       225 ~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~  304 (505)
T KOG3207|consen  225 EVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLE  304 (505)
T ss_pred             HHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccce
Confidence            888888774110111112234567888888887764322 344567777778887777765444443     34456778


Q ss_pred             EEEccCCccc
Q 030257          152 TLYLSYNQLS  161 (180)
Q Consensus       152 ~l~l~~n~~~  161 (180)
                      .|++..|++.
T Consensus       305 ~L~i~~N~I~  314 (505)
T KOG3207|consen  305 YLNISENNIR  314 (505)
T ss_pred             eeecccCccc
Confidence            8888888774

>PLN03150 hypothetical protein; Provisional

Probab=99.16  E-value=1.2e-10  Score=91.19  Aligned_cols=108  Identities=31%  Similarity=0.514  Sum_probs=76.0

Q ss_pred             CccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcc
Q 030257           52 RLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLS  131 (180)
Q Consensus        52 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~  131 (180)
                      .++.|++.++.+....|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            36667777777766677777777777777777777766667677777777777777777777777777777777777777


Q ss_pred             cCcCCCCCCcccccC-CCCccEEEccCCcc
Q 030257          132 VNNLTGGIIPSLLGN-QSSLQTLYLSYNQL  160 (180)
Q Consensus       132 ~~~~~~~~~~~~~~~-~~~L~~l~l~~n~~  160 (180)
                      +|.+++. +|..+.. ..++..+++.+|..
T Consensus       499 ~N~l~g~-iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        499 GNSLSGR-VPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             CCccccc-CChHHhhccccCceEEecCCcc
Confidence            7777654 5554443 23456677777654

>PLN03150 hypothetical protein; Provisional

Probab=99.16  E-value=1.9e-10  Score=90.08  Aligned_cols=92  Identities=37%  Similarity=0.537  Sum_probs=55.0

Q ss_pred             ccEEEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEcc
Q 030257           77 LIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLS  156 (180)
Q Consensus        77 L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~  156 (180)
                      ++.|++.++.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++. +|..+..+++|+.|+++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEECc
Confidence            45556666655555555566666666666666666555555556666666666666666543 45555566666666666


Q ss_pred             CCcccCCCChhhh
Q 030257          157 YNQLSGPIPSFIL  169 (180)
Q Consensus       157 ~n~~~~~~~~~~~  169 (180)
                      +|.+++.+|..+.
T Consensus       499 ~N~l~g~iP~~l~  511 (623)
T PLN03150        499 GNSLSGRVPAALG  511 (623)
T ss_pred             CCcccccCChHHh
Confidence            6666666665544

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.15  E-value=9.2e-12  Score=90.38  Aligned_cols=164  Identities=21%  Similarity=0.196  Sum_probs=120.4

Q ss_pred             CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCC-CCccccCCCCccEEEecccccccccchhhhccCCccE
Q 030257            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGK-IPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIR   79 (180)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   79 (180)
                      ||+|+.|+++.|.+........-..+++|+.|.+++|.+... .......+|++..|++..|...........-+..|++
T Consensus       171 Lp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~  250 (505)
T KOG3207|consen  171 LPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQE  250 (505)
T ss_pred             cccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhh
Confidence            689999999999886433333334589999999999988733 2233457899999999998543233344556778999


Q ss_pred             EEeeCCcCCCCc-chhhcCCCcccEEEecCCcCCCC-cccc-----ccCCCCCCeEEcccCcCCCCCCcccccCCCCccE
Q 030257           80 LYLRGNQLQGEI-PEELGNLAELEMLWLQNNFLTRA-IPSS-----IFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQT  152 (180)
Q Consensus        80 l~l~~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~-~~~~-----l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  152 (180)
                      |++.+|.+-... -.....++.|..++++.+.+.+. .++.     ....++|+.|++..|.+.++.....+..+++|+.
T Consensus       251 LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~  330 (505)
T KOG3207|consen  251 LDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKH  330 (505)
T ss_pred             ccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhh
Confidence            999999865321 24567889999999999988652 2332     3467899999999999986544445666778888


Q ss_pred             EEccCCcccCCC
Q 030257          153 LYLSYNQLSGPI  164 (180)
Q Consensus       153 l~l~~n~~~~~~  164 (180)
                      +.+..|.+..+.
T Consensus       331 l~~~~n~ln~e~  342 (505)
T KOG3207|consen  331 LRITLNYLNKET  342 (505)
T ss_pred             hhcccccccccc
Confidence            888888876443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.13  E-value=4.2e-11  Score=84.70  Aligned_cols=163  Identities=19%  Similarity=0.207  Sum_probs=113.3

Q ss_pred             CCCceEEEeeCCeecccCchhh---hhcCCCccEEEcccccCCCCCC-------------ccccCCCCccEEEecccccc
Q 030257            1 MSSLLSIRFTNNTLFGELPPNF---CNHLSNLESLFLKNNMFHGKIP-------------STLSNCKRLRNISLSLDDFS   64 (180)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~-------------~~~~~l~~L~~L~l~~~~~~   64 (180)
                      +|.|++++|++|.+-...++.+   .+++..|++|.+.+|.+...-.             .....=+.||.+...+|++.
T Consensus        91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle  170 (382)
T KOG1909|consen   91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE  170 (382)
T ss_pred             CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence            3689999999998764444433   4567889999999997763221             12234568999999988875


Q ss_pred             c----ccchhhhccCCccEEEeeCCcCCCCcc----hhhcCCCcccEEEecCCcCCCC----ccccccCCCCCCeEEccc
Q 030257           65 G----TIPKEIGNVTKLIRLYLRGNQLQGEIP----EELGNLAELEMLWLQNNFLTRA----IPSSIFNLSSLSNLDLSV  132 (180)
Q Consensus        65 ~----~~~~~~~~l~~L~~l~l~~~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~----~~~~l~~~~~L~~L~l~~  132 (180)
                      .    .....+..++.|+++.+..|.+.....    .++..|++|+.||+++|.++..    +...++.+++|+++++++
T Consensus       171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d  250 (382)
T KOG1909|consen  171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD  250 (382)
T ss_pred             cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence            2    334456778899999999888764432    4567889999999999988643    334667788899999999


Q ss_pred             CcCCCCCCc---ccc-cCCCCccEEEccCCcccCC
Q 030257          133 NNLTGGIIP---SLL-GNQSSLQTLYLSYNQLSGP  163 (180)
Q Consensus       133 ~~~~~~~~~---~~~-~~~~~L~~l~l~~n~~~~~  163 (180)
                      |.+.+....   ..+ ...++|+.+.+.+|.++..
T Consensus       251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~d  285 (382)
T KOG1909|consen  251 CLLENEGAIAFVDALKESAPSLEVLELAGNEITRD  285 (382)
T ss_pred             cccccccHHHHHHHHhccCCCCceeccCcchhHHH
Confidence            887643111   112 2356777777777776543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.11  E-value=6.8e-12  Score=87.58  Aligned_cols=134  Identities=29%  Similarity=0.336  Sum_probs=106.7

Q ss_pred             CCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEEe
Q 030257           27 SNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWL  106 (180)
Q Consensus        27 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l  106 (180)
                      ..|+++++++|.|. .+..+..-.|.++.|+++.|++..+  +.+..+++|++||+++|.+. ....+-..+-+++++.+
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence            46899999999887 6666677789999999999999744  44888999999999999876 34444456678999999


Q ss_pred             cCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCCChh
Q 030257          107 QNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSF  167 (180)
Q Consensus       107 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~  167 (180)
                      .+|.+.  -..++..+-+|..||+++|+|........++.++.|+++.+.+|++.. +++.
T Consensus       360 a~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~-~vdY  417 (490)
T KOG1259|consen  360 AQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG-SVDY  417 (490)
T ss_pred             hhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc-cchH
Confidence            999874  245666778899999999998744344568899999999999999984 5543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.09  E-value=2e-10  Score=62.66  Aligned_cols=59  Identities=34%  Similarity=0.439  Sum_probs=31.7

Q ss_pred             CccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCc
Q 030257           28 NLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQ   86 (180)
Q Consensus        28 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~   86 (180)
                      +|++|++++|.+....+.+|.++++|++|++++|.+....++.|..+++|+++++.+|.
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45555555555554444455555555555555555554444555555555555555543

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.05  E-value=1.8e-10  Score=85.90  Aligned_cols=157  Identities=41%  Similarity=0.590  Sum_probs=83.7

Q ss_pred             CceEEEeeCCeecccCchhhhhcCC-CccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257            3 SLLSIRFTNNTLFGELPPNFCNHLS-NLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (180)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   81 (180)
                      .++.+.+.++.++ .++..... +. +|+.|++++|.+. ..+..+..+++|+.|++.+|.+.. .+......+.++.++
T Consensus       117 ~l~~L~l~~n~i~-~i~~~~~~-~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L~  192 (394)
T COG4886         117 NLTSLDLDNNNIT-DIPPLIGL-LKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLD  192 (394)
T ss_pred             ceeEEecCCcccc-cCcccccc-chhhcccccccccchh-hhhhhhhccccccccccCCchhhh-hhhhhhhhhhhhhee
Confidence            3455555555554 34443332 32 5555555555554 333334555555555555555542 222222445555555


Q ss_pred             eeCCcCCC----------------------CcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCC
Q 030257           82 LRGNQLQG----------------------EIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGI  139 (180)
Q Consensus        82 l~~~~~~~----------------------~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  139 (180)
                      +++|.+..                      ..+..+..+.++..+.+.+|++.. .+.....++.++.|++++|.+++  
T Consensus       193 ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~--  269 (394)
T COG4886         193 LSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISS--  269 (394)
T ss_pred             ccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee-ccchhccccccceeccccccccc--
Confidence            55555441                      123333334444444444444431 24455666778888888888874  


Q ss_pred             CcccccCCCCccEEEccCCcccCCCChh
Q 030257          140 IPSLLGNQSSLQTLYLSYNQLSGPIPSF  167 (180)
Q Consensus       140 ~~~~~~~~~~L~~l~l~~n~~~~~~~~~  167 (180)
                      ++. +....+++.++++++.+....+..
T Consensus       270 i~~-~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         270 ISS-LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             ccc-ccccCccCEEeccCccccccchhh
Confidence            333 667788888888888877554443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.99  E-value=4.2e-09  Score=83.62  Aligned_cols=51  Identities=18%  Similarity=0.351  Sum_probs=23.9

Q ss_pred             EEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccc
Q 030257            6 SIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFS   64 (180)
Q Consensus         6 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~   64 (180)
                      .|+++++.++ .+|..+.   ++|+.|++.+|++. .+|.   ..++|++|++++|.+.
T Consensus       205 ~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt  255 (788)
T PRK15387        205 VLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT  255 (788)
T ss_pred             EEEcCCCCCC-cCCcchh---cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC
Confidence            4555555554 4554442   24455555555544 2222   1244555555555444

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.98  E-value=1.6e-11  Score=91.99  Aligned_cols=142  Identities=31%  Similarity=0.525  Sum_probs=103.6

Q ss_pred             cCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhc
Q 030257           17 ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELG   96 (180)
Q Consensus        17 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~   96 (180)
                      .+|..+.. +..|+.++++.|++. .+|..+.. --|+.|.+++|.+. ..|..++....|..++.+.|.+. ..|..+.
T Consensus       112 ~ip~~i~~-L~~lt~l~ls~NqlS-~lp~~lC~-lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~  186 (722)
T KOG0532|consen  112 TIPEAICN-LEALTFLDLSSNQLS-HLPDGLCD-LPLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLG  186 (722)
T ss_pred             ecchhhhh-hhHHHHhhhccchhh-cCChhhhc-CcceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhh
Confidence            45555544 667777777777776 55554433 34667777777776 55666667778888888888776 4677777


Q ss_pred             CCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCCChhh
Q 030257           97 NLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFI  168 (180)
Q Consensus        97 ~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~  168 (180)
                      .+.+|+.+++.+|.+.+ +|..+..+ .|..||++.|+++  .+|..|.+++.|+.|-|.+|++.. .|..+
T Consensus       187 ~l~slr~l~vrRn~l~~-lp~El~~L-pLi~lDfScNkis--~iPv~fr~m~~Lq~l~LenNPLqS-PPAqI  253 (722)
T KOG0532|consen  187 YLTSLRDLNVRRNHLED-LPEELCSL-PLIRLDFSCNKIS--YLPVDFRKMRHLQVLQLENNPLQS-PPAQI  253 (722)
T ss_pred             hHHHHHHHHHhhhhhhh-CCHHHhCC-ceeeeecccCcee--ecchhhhhhhhheeeeeccCCCCC-ChHHH
Confidence            88888888888888874 45444444 5889999999998  478889999999999999999984 55444

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.96  E-value=5.9e-10  Score=83.13  Aligned_cols=131  Identities=40%  Similarity=0.539  Sum_probs=93.2

Q ss_pred             CCCccEEEcccccCCCCCCccccCCC-CccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEE
Q 030257           26 LSNLESLFLKNNMFHGKIPSTLSNCK-RLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEML  104 (180)
Q Consensus        26 l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l  104 (180)
                      +..++.+.+.++.+. ..+....... +|+.|+++++.+. ..+..+..+++|+.|++..|.+.. .+......+.|+.+
T Consensus       115 ~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L  191 (394)
T COG4886         115 LTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNL  191 (394)
T ss_pred             ccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhh-hhhhhhhhhhhhhe
Confidence            678999999999988 5555556664 9999999999987 444568899999999999999873 44444467889999


Q ss_pred             EecCCcCCCCccccccCCCCCCeEEcccC-----------------------cCCCCCCcccccCCCCccEEEccCCccc
Q 030257          105 WLQNNFLTRAIPSSIFNLSSLSNLDLSVN-----------------------NLTGGIIPSLLGNQSSLQTLYLSYNQLS  161 (180)
Q Consensus       105 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-----------------------~~~~~~~~~~~~~~~~L~~l~l~~n~~~  161 (180)
                      ++++|.+.. ++........|+++.+++|                       ++.+  .+..+..+++++.+++++|.++
T Consensus       192 ~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~--~~~~~~~l~~l~~L~~s~n~i~  268 (394)
T COG4886         192 DLSGNKISD-LPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED--LPESIGNLSNLETLDLSNNQIS  268 (394)
T ss_pred             eccCCcccc-CchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee--ccchhccccccceecccccccc
Confidence            999998864 3332222333555555555                       2221  1344556667888888888877


Q ss_pred             C
Q 030257          162 G  162 (180)
Q Consensus       162 ~  162 (180)
                      .
T Consensus       269 ~  269 (394)
T COG4886         269 S  269 (394)
T ss_pred             c
Confidence            4

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.82  E-value=4.9e-10  Score=78.49  Aligned_cols=128  Identities=22%  Similarity=0.223  Sum_probs=102.6

Q ss_pred             CceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEe
Q 030257            3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL   82 (180)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l   82 (180)
                      .|+.+++++|.++ .+..++-- .|.++.|+++.|.+.. . +.+..+++|..|++++|.++ ...+.-..+.+++.|.+
T Consensus       285 ~LtelDLS~N~I~-~iDESvKL-~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  285 ELTELDLSGNLIT-QIDESVKL-APKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhhccccccchh-hhhhhhhh-ccceeEEeccccceee-e-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence            3678899999886 55555543 8999999999999862 2 33788999999999999887 44566677889999999


Q ss_pred             eCCcCCCCcchhhcCCCcccEEEecCCcCCCC-ccccccCCCCCCeEEcccCcCCC
Q 030257           83 RGNQLQGEIPEELGNLAELEMLWLQNNFLTRA-IPSSIFNLSSLSNLDLSVNNLTG  137 (180)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~  137 (180)
                      ..|.+.  ..+.++.+-+|..+++.+|++... ....++++|.|+++.+.+|.+..
T Consensus       360 a~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  360 AQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            999876  346677888999999999999642 23577889999999999998863

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.80  E-value=1.1e-08  Score=82.59  Aligned_cols=162  Identities=27%  Similarity=0.355  Sum_probs=112.6

Q ss_pred             CCceEEEeeCCee-cccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257            2 SSLLSIRFTNNTL-FGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (180)
Q Consensus         2 ~~L~~L~l~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   80 (180)
                      +.|++|-+.++.- ...++..+|..++.|++|++++|.-...+|..++.+-+||+|+++++.+. ..|..+.++..|.+|
T Consensus       545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL  623 (889)
T ss_pred             CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence            5688888888862 23678888888999999999988766789999999999999999999988 788899999999999


Q ss_pred             EeeCCcCCCCcchhhcCCCcccEEEecCCcCC--CCccccccCCCCCCeEEcccCcC-----------------------
Q 030257           81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLT--RAIPSSIFNLSSLSNLDLSVNNL-----------------------  135 (180)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~--~~~~~~l~~~~~L~~L~l~~~~~-----------------------  135 (180)
                      ++..+......+.....+++|+.+.+......  ......+..+.+|+.+.......                       
T Consensus       624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~  703 (889)
T KOG4658|consen  624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEG  703 (889)
T ss_pred             ccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcc
Confidence            99887754344555556889999988655421  11112223333333332211111                       


Q ss_pred             -CCCCCcccccCCCCccEEEccCCcccCCC
Q 030257          136 -TGGIIPSLLGNQSSLQTLYLSYNQLSGPI  164 (180)
Q Consensus       136 -~~~~~~~~~~~~~~L~~l~l~~n~~~~~~  164 (180)
                       .-......+..+.+|+.|.+.++.+....
T Consensus       704 ~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~  733 (889)
T KOG4658|consen  704 CSKRTLISSLGSLGNLEELSILDCGISEIV  733 (889)
T ss_pred             cccceeecccccccCcceEEEEcCCCchhh
Confidence             00112334567788899999998886433

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.73  E-value=2.7e-10  Score=85.53  Aligned_cols=157  Identities=31%  Similarity=0.454  Sum_probs=115.0

Q ss_pred             EEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCc
Q 030257            7 IRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQ   86 (180)
Q Consensus         7 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~   86 (180)
                      .+++.|++. .+|..+.. +..|+.+.++.|.+. ..|.++..+..|.+++++.|+++ ..|..++.++ |+.+-+.+|+
T Consensus        80 aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNk  154 (722)
T KOG0532|consen   80 ADLSRNRFS-ELPEEACA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNK  154 (722)
T ss_pred             hhccccccc-cCchHHHH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCc
Confidence            455566664 56666654 666777777777766 67777788888888888888887 4555555554 7888888888


Q ss_pred             CCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCCCh
Q 030257           87 LQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPS  166 (180)
Q Consensus        87 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  166 (180)
                      +. ..|..++....|..++.+.|.+. ..+..+..+.+|+.|.+..|++.+  +|..+. .-.|..||++.|.++ .+|-
T Consensus       155 l~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~--lp~El~-~LpLi~lDfScNkis-~iPv  228 (722)
T KOG0532|consen  155 LT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED--LPEELC-SLPLIRLDFSCNKIS-YLPV  228 (722)
T ss_pred             cc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh--CCHHHh-CCceeeeecccCcee-ecch
Confidence            77 57777777788888888888886 456666777888888888888763  555555 457889999999998 6888


Q ss_pred             hhhhhccc
Q 030257          167 FILCKFSL  174 (180)
Q Consensus       167 ~~~~~~~~  174 (180)
                      .|..+..+
T Consensus       229 ~fr~m~~L  236 (722)
T KOG0532|consen  229 DFRKMRHL  236 (722)
T ss_pred             hhhhhhhh
Confidence            87666544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.73  E-value=2.3e-09  Score=84.42  Aligned_cols=149  Identities=21%  Similarity=0.274  Sum_probs=86.1

Q ss_pred             CceEEEeeCCee-cccCchhhhhcCCCccEEEcccccCC-CCCCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257            3 SLLSIRFTNNTL-FGELPPNFCNHLSNLESLFLKNNMFH-GKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (180)
Q Consensus         3 ~L~~L~l~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   80 (180)
                      +|+.|+++|... ....+..++.-+|.|+.|.+.+-.+. +.+..-...+++|+.||++++.++..  ..++.+++|++|
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L  200 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL  200 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence            567777776542 22334555566788888888776554 22233345677888888888777633  556777777777


Q ss_pred             EeeCCcCCC-CcchhhcCCCcccEEEecCCcCCCCc--c----ccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEE
Q 030257           81 YLRGNQLQG-EIPEELGNLAELEMLWLQNNFLTRAI--P----SSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTL  153 (180)
Q Consensus        81 ~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~--~----~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l  153 (180)
                      .+.+=.+.. .....+-++++|+.||+++.+-....  .    +.-..+|.|+.||.|++.+.+......+...++|+.+
T Consensus       201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i  280 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI  280 (699)
T ss_pred             hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence            766544432 12234556777888887765543211  1    1123467777777777776543333333333444433

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=2.9e-10  Score=79.36  Aligned_cols=155  Identities=19%  Similarity=0.127  Sum_probs=84.3

Q ss_pred             CceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccc--cchhhhccCCccEE
Q 030257            3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGT--IPKEIGNVTKLIRL   80 (180)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~l   80 (180)
                      .|+.++++...++-.--..+.+.+.+|+.|.+.|+.+.+.....+..-.+|+.++++.|.--+.  ..-.+.++..|.+|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            4667777777765433344556677888888888877766667777778888888887653211  11245677788888


Q ss_pred             EeeCCcCCCCcch-hhcCC-CcccEEEecCCcCC---CCccccccCCCCCCeEEcccCc-CCCCCCcccccCCCCccEEE
Q 030257           81 YLRGNQLQGEIPE-ELGNL-AELEMLWLQNNFLT---RAIPSSIFNLSSLSNLDLSVNN-LTGGIIPSLLGNQSSLQTLY  154 (180)
Q Consensus        81 ~l~~~~~~~~~~~-~~~~~-~~L~~l~l~~~~~~---~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~l~  154 (180)
                      ++++|........ .+.+. .+++.|+++|+.-.   .........+|++.+||+++|. +++ .....+.+.+.|+++.
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~lS  344 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFFKFNYLQHLS  344 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc-hHHHHHHhcchheeee
Confidence            8888765422111 11111 34555555544321   0111122345555555555553 222 1222334444555555


Q ss_pred             ccCC
Q 030257          155 LSYN  158 (180)
Q Consensus       155 l~~n  158 (180)
                      ++.|
T Consensus       345 lsRC  348 (419)
T KOG2120|consen  345 LSRC  348 (419)
T ss_pred             hhhh
Confidence            5554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.54  E-value=4.2e-08  Score=69.84  Aligned_cols=142  Identities=22%  Similarity=0.171  Sum_probs=73.8

Q ss_pred             CCCccEEEcccccCCCCCCccc----cCCCCccEEEecccccccccchh-------------hhccCCccEEEeeCCcCC
Q 030257           26 LSNLESLFLKNNMFHGKIPSTL----SNCKRLRNISLSLDDFSGTIPKE-------------IGNVTKLIRLYLRGNQLQ   88 (180)
Q Consensus        26 l~~L~~L~l~~~~~~~~~~~~~----~~l~~L~~L~l~~~~~~~~~~~~-------------~~~l~~L~~l~l~~~~~~   88 (180)
                      .+.|++++|++|.+....+..|    ..+..|++|++.+|.+.......             ..+-+.|+++.+.+|++.
T Consensus        91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle  170 (382)
T KOG1909|consen   91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE  170 (382)
T ss_pred             CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence            3456666666665553333322    34556666666666654221111             122345666666666654


Q ss_pred             CCc----chhhcCCCcccEEEecCCcCCCCc----cccccCCCCCCeEEcccCcCCCC---CCcccccCCCCccEEEccC
Q 030257           89 GEI----PEELGNLAELEMLWLQNNFLTRAI----PSSIFNLSSLSNLDLSVNNLTGG---IIPSLLGNQSSLQTLYLSY  157 (180)
Q Consensus        89 ~~~----~~~~~~~~~L~~l~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~L~~l~l~~  157 (180)
                      ...    ...++..+.|+.+.++.|.|....    ...+..+++|++||+.+|-++..   .+...++.+++|+.+++++
T Consensus       171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d  250 (382)
T KOG1909|consen  171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD  250 (382)
T ss_pred             cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence            221    123445556666666666663221    13455667777777777665421   1223445556667777777


Q ss_pred             CcccCCCChh
Q 030257          158 NQLSGPIPSF  167 (180)
Q Consensus       158 n~~~~~~~~~  167 (180)
                      |.+.+.-...
T Consensus       251 cll~~~Ga~a  260 (382)
T KOG1909|consen  251 CLLENEGAIA  260 (382)
T ss_pred             cccccccHHH
Confidence            6665444333

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.53  E-value=6.5e-08  Score=67.89  Aligned_cols=165  Identities=22%  Similarity=0.212  Sum_probs=104.3

Q ss_pred             CCceEEEeeCCeecc-cCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccc-cchhhhccCCccE
Q 030257            2 SSLLSIRFTNNTLFG-ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGT-IPKEIGNVTKLIR   79 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~   79 (180)
                      +.++.+++.+|.+.+ +-..++..++|.|+.|+++.|++......-.....+|+.+.+.+..+... ....+..++.+++
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte  150 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE  150 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence            346678888888763 12355677899999999999977632222114567899999988877633 2334566788888


Q ss_pred             EEeeCCcCCCC----------cchh-------------------hcCCCcccEEEecCCcCCCC-ccccccCCCCCCeEE
Q 030257           80 LYLRGNQLQGE----------IPEE-------------------LGNLAELEMLWLQNNFLTRA-IPSSIFNLSSLSNLD  129 (180)
Q Consensus        80 l~l~~~~~~~~----------~~~~-------------------~~~~~~L~~l~l~~~~~~~~-~~~~l~~~~~L~~L~  129 (180)
                      ++++.|.+...          .+..                   .+-++++..+.+..|++... ........|.+..|+
T Consensus       151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~Ln  230 (418)
T KOG2982|consen  151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLN  230 (418)
T ss_pred             hhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhh
Confidence            88877743211          0000                   01124455555555555321 122344566677888


Q ss_pred             cccCcCCCCCCcccccCCCCccEEEccCCcccCCCCh
Q 030257          130 LSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPS  166 (180)
Q Consensus       130 l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  166 (180)
                      ++.+.+.++.--+.+...++|..+.+..+++.+....
T Consensus       231 L~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~  267 (418)
T KOG2982|consen  231 LGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG  267 (418)
T ss_pred             hcccccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence            8888887654556677888999999999988765543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.53  E-value=9.9e-08  Score=77.27  Aligned_cols=108  Identities=27%  Similarity=0.337  Sum_probs=85.0

Q ss_pred             CCCccEEEccccc--CCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccE
Q 030257           26 LSNLESLFLKNNM--FHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEM  103 (180)
Q Consensus        26 l~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~  103 (180)
                      .+.|++|-+.++.  +.......|..++.|+.||+++|.-....|..++.+.+|++|++.++.+. ..|..++++..|.+
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~  622 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY  622 (889)
T ss_pred             CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence            4578888888875  44344445778999999999987766688888999999999999998887 57888888889999


Q ss_pred             EEecCCcCCCCccccccCCCCCCeEEcccCc
Q 030257          104 LWLQNNFLTRAIPSSIFNLSSLSNLDLSVNN  134 (180)
Q Consensus       104 l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  134 (180)
                      |++..+.....++.....+.+|++|.+....
T Consensus       623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  623 LNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             eccccccccccccchhhhcccccEEEeeccc
Confidence            9988776554556677778889999887765

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.48  E-value=5.3e-07  Score=59.84  Aligned_cols=108  Identities=23%  Similarity=0.277  Sum_probs=72.1

Q ss_pred             CCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCC-cchhhcCCCcccEE
Q 030257           26 LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGE-IPEELGNLAELEML  104 (180)
Q Consensus        26 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~-~~~~~~~~~~L~~l  104 (180)
                      +.+...+++.+|.+. .. +.|..++.|.+|.+++|+++.+.|..-..+++++.|.+.+|.+... ....+..|++|+.|
T Consensus        41 ~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             ccccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence            445666777777764 22 3356777888888888888776666666677788888888876533 22345677788888


Q ss_pred             EecCCcCCCCcc---ccccCCCCCCeEEcccCcC
Q 030257          105 WLQNNFLTRAIP---SSIFNLSSLSNLDLSVNNL  135 (180)
Q Consensus       105 ~l~~~~~~~~~~---~~l~~~~~L~~L~l~~~~~  135 (180)
                      .+-+|+++....   -.+..+|+|+.||+....-
T Consensus       119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen  119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             eecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence            888887764322   2345677888887766533

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.46  E-value=1.7e-08  Score=62.97  Aligned_cols=83  Identities=27%  Similarity=0.399  Sum_probs=48.4

Q ss_pred             CCccEEEcccccCCCCCCcccc-CCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEE
Q 030257           27 SNLESLFLKNNMFHGKIPSTLS-NCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLW  105 (180)
Q Consensus        27 ~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~  105 (180)
                      ..|...++++|.+. .+|..|. .++.+.++++.+|.++ ..|..+..++.|+.+++..|.+. ..|..+..+.++-+|+
T Consensus        53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen   53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD  129 (177)
T ss_pred             ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence            34555666666665 3444443 3456666666666666 34444666666666666666655 4455544456666666


Q ss_pred             ecCCcCC
Q 030257          106 LQNNFLT  112 (180)
Q Consensus       106 l~~~~~~  112 (180)
                      ..+|.+.
T Consensus       130 s~~na~~  136 (177)
T KOG4579|consen  130 SPENARA  136 (177)
T ss_pred             CCCCccc
Confidence            6666554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.41  E-value=3.3e-07  Score=63.70  Aligned_cols=163  Identities=20%  Similarity=0.193  Sum_probs=102.9

Q ss_pred             CCCceEEEeeCCeecccCchh---hhhcCCCccEEEcccccCCCCCCcc-------------ccCCCCccEEEecccccc
Q 030257            1 MSSLLSIRFTNNTLFGELPPN---FCNHLSNLESLFLKNNMFHGKIPST-------------LSNCKRLRNISLSLDDFS   64 (180)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~---~~~~l~~L~~L~l~~~~~~~~~~~~-------------~~~l~~L~~L~l~~~~~~   64 (180)
                      ||.|+++++++|.+....|..   +.++-..|.+|.+++|.+.+.....             ...-|.|+......|++.
T Consensus        91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle  170 (388)
T COG5238          91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE  170 (388)
T ss_pred             CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence            678888888888876555533   3344667888888888765332221             223567888888877765


Q ss_pred             cc----cchhhhccCCccEEEeeCCcCCCCcch-----hhcCCCcccEEEecCCcCCCC----ccccccCCCCCCeEEcc
Q 030257           65 GT----IPKEIGNVTKLIRLYLRGNQLQGEIPE-----ELGNLAELEMLWLQNNFLTRA----IPSSIFNLSSLSNLDLS  131 (180)
Q Consensus        65 ~~----~~~~~~~l~~L~~l~l~~~~~~~~~~~-----~~~~~~~L~~l~l~~~~~~~~----~~~~l~~~~~L~~L~l~  131 (180)
                      .-    ....+.....++++.+..|.+......     .+..+++|+.|++++|.++..    ....+..|+.|+.|.+.
T Consensus       171 ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ln  250 (388)
T COG5238         171 NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLN  250 (388)
T ss_pred             cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcccc
Confidence            21    122344556788888888887654222     234567888899988888643    23456677888888888


Q ss_pred             cCcCCCCCCcccc-----cCCCCccEEEccCCcccCC
Q 030257          132 VNNLTGGIIPSLL-----GNQSSLQTLYLSYNQLSGP  163 (180)
Q Consensus       132 ~~~~~~~~~~~~~-----~~~~~L~~l~l~~n~~~~~  163 (180)
                      +|-++.......+     ...++|..|...+|.+.+.
T Consensus       251 DClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~  287 (388)
T COG5238         251 DCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGG  287 (388)
T ss_pred             chhhccccHHHHHHHhhhhcCCCccccccchhhhcCc
Confidence            8877643322222     1245677777777655443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.39  E-value=2.2e-09  Score=83.08  Aligned_cols=111  Identities=34%  Similarity=0.350  Sum_probs=64.6

Q ss_pred             ccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchh-hcCCCcccEEEecCCcCCCCccccccCCC
Q 030257           45 STLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEE-LGNLAELEMLWLQNNFLTRAIPSSIFNLS  123 (180)
Q Consensus        45 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~l~~~~  123 (180)
                      .++.-++.++.|+++.|..+.+  +.+..++.|++||++.|.+.. .|.. ...|. |..|++.+|-++.  ...+.++.
T Consensus       181 ~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~-L~~L~lrnN~l~t--L~gie~Lk  254 (1096)
T KOG1859|consen  181 ESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRH-VPQLSMVGCK-LQLLNLRNNALTT--LRGIENLK  254 (1096)
T ss_pred             HHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhcc-ccccchhhhh-heeeeecccHHHh--hhhHHhhh
Confidence            3344456666666666666533  255666667777777666552 2221 22233 6666666665542  23344566


Q ss_pred             CCCeEEcccCcCCCCCCcccccCCCCccEEEccCCccc
Q 030257          124 SLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS  161 (180)
Q Consensus       124 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  161 (180)
                      +|+.||+++|-+.+..-...++.+..|..|.|.||++.
T Consensus       255 sL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  255 SLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            77777777776664433344555667777777777764

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.39  E-value=1.2e-07  Score=74.93  Aligned_cols=149  Identities=19%  Similarity=0.216  Sum_probs=101.9

Q ss_pred             CCccEEEcccccCC-CCCCccc-cCCCCccEEEeccccccc-ccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccE
Q 030257           27 SNLESLFLKNNMFH-GKIPSTL-SNCKRLRNISLSLDDFSG-TIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEM  103 (180)
Q Consensus        27 ~~L~~L~l~~~~~~-~~~~~~~-~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~  103 (180)
                      .+|++|+++|...- ..-+..+ .-+|.|+.|.+.+-.... .......++++|..||+++++++..  .+++.+++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            56888888885422 1111122 348999999999866542 2234456789999999999998743  67888899999


Q ss_pred             EEecCCcCCC-CccccccCCCCCCeEEcccCcCCCCC-Cc----ccccCCCCccEEEccCCcccCCCChhhhhhcccccc
Q 030257          104 LWLQNNFLTR-AIPSSIFNLSSLSNLDLSVNNLTGGI-IP----SLLGNQSSLQTLYLSYNQLSGPIPSFILCKFSLLDN  177 (180)
Q Consensus       104 l~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~-~~----~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~  177 (180)
                      |.+.+=.+.. .....+.++.+|++||+|.....+.. ..    +.-..++.|+.||.++..+...+-+.+....+.+++
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~  279 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ  279 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence            9887766643 22235678999999999987654221 01    122358899999999998887777776655554443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=2.1e-08  Score=70.30  Aligned_cols=158  Identities=20%  Similarity=0.151  Sum_probs=107.1

Q ss_pred             CCCceEEEeeCCeecccCchhhhhcCCCccEEEccccc-CCCC-CCccccCCCCccEEEeccccccccc-chhhhc-cCC
Q 030257            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNM-FHGK-IPSTLSNCKRLRNISLSLDDFSGTI-PKEIGN-VTK   76 (180)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~-l~~   76 (180)
                      |.+|+.|.+.++.+.+.+...+.. -.+|+.++++.++ ++.. ..--+..|+.|..|+++.|...... ...... -++
T Consensus       209 C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~  287 (419)
T KOG2120|consen  209 CSKLKNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISET  287 (419)
T ss_pred             HHhhhhccccccccCcHHHHHHhc-cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchh
Confidence            467889999999988766666665 7889999999874 3311 1122467899999999999875322 112222 256


Q ss_pred             ccEEEeeCCcCC--CC-cchhhcCCCcccEEEecCCcC-CCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccE
Q 030257           77 LIRLYLRGNQLQ--GE-IPEELGNLAELEMLWLQNNFL-TRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQT  152 (180)
Q Consensus        77 L~~l~l~~~~~~--~~-~~~~~~~~~~L~~l~l~~~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  152 (180)
                      ++.|++++++-.  .. ...-.+.|+++..||++++.. .......+..++.|+++.++.|.--.......+...++|..
T Consensus       288 l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~y  367 (419)
T KOG2120|consen  288 LTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVY  367 (419)
T ss_pred             hhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEE
Confidence            788888877522  11 122346789999999987754 33334566778899999999986432233345677788999


Q ss_pred             EEccCCc
Q 030257          153 LYLSYNQ  159 (180)
Q Consensus       153 l~l~~n~  159 (180)
                      |++.++.
T Consensus       368 Ldv~g~v  374 (419)
T KOG2120|consen  368 LDVFGCV  374 (419)
T ss_pred             EEecccc
Confidence            9988874

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.37  E-value=1.3e-06  Score=58.03  Aligned_cols=127  Identities=20%  Similarity=0.115  Sum_probs=90.1

Q ss_pred             ccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEEecC
Q 030257           29 LESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQN  108 (180)
Q Consensus        29 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~  108 (180)
                      =+++++.+.++....- --........+++++|.+.  ..+.|..++.|.+|.+++|+++...|.--..++++..|.+.+
T Consensus        21 e~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn   97 (233)
T KOG1644|consen   21 ERELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN   97 (233)
T ss_pred             ccccccccccccchhh-ccccccccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence            3455666665542211 0112446778899999875  345688899999999999999876665545568899999999


Q ss_pred             CcCCCCc-cccccCCCCCCeEEcccCcCCCCCCc--ccccCCCCccEEEccCC
Q 030257          109 NFLTRAI-PSSIFNLSSLSNLDLSVNNLTGGIIP--SLLGNQSSLQTLYLSYN  158 (180)
Q Consensus       109 ~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~l~l~~n  158 (180)
                      |++.... .+.+..+|+|+.|.+-+|.++...--  ..+..+++|++||...-
T Consensus        98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen   98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             cchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            9997532 24567889999999999988743111  25678899999997654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.34  E-value=3.2e-08  Score=74.33  Aligned_cols=104  Identities=29%  Similarity=0.343  Sum_probs=47.7

Q ss_pred             CCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEE
Q 030257           26 LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLW  105 (180)
Q Consensus        26 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~  105 (180)
                      +.+++.+++.+|.+... ...+..+++|+.|++++|.+...  ..+..++.|+.|++.+|.+..  ...+..+..|+.++
T Consensus        94 ~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~--~~~~~~l~~L~~l~  168 (414)
T KOG0531|consen   94 LKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISD--ISGLESLKSLKLLD  168 (414)
T ss_pred             ccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhheeccCcchh--ccCCccchhhhccc
Confidence            45555555555555422 22134455555555555555422  223444445555555555441  22333345555555


Q ss_pred             ecCCcCCCCcc-ccccCCCCCCeEEcccCcC
Q 030257          106 LQNNFLTRAIP-SSIFNLSSLSNLDLSVNNL  135 (180)
Q Consensus       106 l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~  135 (180)
                      +++|.+..... . ...+.+++.+++.+|.+
T Consensus       169 l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i  198 (414)
T KOG0531|consen  169 LSYNRIVDIENDE-LSELISLEELDLGGNSI  198 (414)
T ss_pred             CCcchhhhhhhhh-hhhccchHHHhccCCch
Confidence            55555543211 1 23344444444444433

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.32  E-value=3.3e-08  Score=76.84  Aligned_cols=105  Identities=30%  Similarity=0.305  Sum_probs=73.6

Q ss_pred             CccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcc
Q 030257           52 RLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLS  131 (180)
Q Consensus        52 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~  131 (180)
                      +|...+.++|++. .+..++.-++.++.|++++|.+..  ...+..++.|++||++.|.+.. .|..=..-.+|..|.++
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~--v~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~L~~L~lr  240 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTK--VDNLRRLPKLKHLDLSYNCLRH-VPQLSMVGCKLQLLNLR  240 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhh--hHHHHhcccccccccccchhcc-ccccchhhhhheeeeec
Confidence            3444455555554 445566667888899999988763  3477888899999999888863 34322223458889999


Q ss_pred             cCcCCCCCCcccccCCCCccEEEccCCcccCC
Q 030257          132 VNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGP  163 (180)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~  163 (180)
                      +|.++.   ...+.++++|+.||++.|-+.+.
T Consensus       241 nN~l~t---L~gie~LksL~~LDlsyNll~~h  269 (1096)
T KOG1859|consen  241 NNALTT---LRGIENLKSLYGLDLSYNLLSEH  269 (1096)
T ss_pred             ccHHHh---hhhHHhhhhhhccchhHhhhhcc
Confidence            888862   24467888999999999977643

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.26  E-value=9.8e-08  Score=71.76  Aligned_cols=151  Identities=28%  Similarity=0.266  Sum_probs=97.4

Q ss_pred             CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (180)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   80 (180)
                      +.++..+++.+|.+.+ + .....++++|++|++++|.|....  .+..++.|+.|++.+|.+...  ..+..+..++.+
T Consensus        94 ~~~l~~l~l~~n~i~~-i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l  167 (414)
T KOG0531|consen   94 LKSLEALDLYDNKIEK-I-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLL  167 (414)
T ss_pred             ccceeeeeccccchhh-c-ccchhhhhcchheecccccccccc--chhhccchhhheeccCcchhc--cCCccchhhhcc
Confidence            3678889999988863 3 222445899999999999987432  345677799999999998633  445668889999


Q ss_pred             EeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCC------------------------CCeEEcccCcCC
Q 030257           81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSS------------------------LSNLDLSVNNLT  136 (180)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~------------------------L~~L~l~~~~~~  136 (180)
                      ++++|.+...-+.....+.+++.+.+.+|.+..  ...+..+..                        |+.+++++|.+.
T Consensus       168 ~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~  245 (414)
T KOG0531|consen  168 DLSYNRIVDIENDELSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRIS  245 (414)
T ss_pred             cCCcchhhhhhhhhhhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCccc
Confidence            999988763322003567788888888886642  111111111                        556666666654


Q ss_pred             CCCCcccccCCCCccEEEccCCccc
Q 030257          137 GGIIPSLLGNQSSLQTLYLSYNQLS  161 (180)
Q Consensus       137 ~~~~~~~~~~~~~L~~l~l~~n~~~  161 (180)
                      .  .+..+.....+..+++..|.+.
T Consensus       246 ~--~~~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  246 R--SPEGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             c--ccccccccccccccchhhcccc
Confidence            2  2233445566666666666554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.19  E-value=9e-06  Score=50.95  Aligned_cols=110  Identities=21%  Similarity=0.271  Sum_probs=49.0

Q ss_pred             CchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcC
Q 030257           18 LPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGN   97 (180)
Q Consensus        18 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~   97 (180)
                      ++...|.++.+|+.+.+.. .+......+|..+.+++.+.+..+ +.......+..+..++.+.+.. .+.......+..
T Consensus         3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~   79 (129)
T PF13306_consen    3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN   79 (129)
T ss_dssp             E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred             ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence            4455555566677777664 344344455666666777776654 4434445566666677776654 222223344555


Q ss_pred             CCcccEEEecCCcCCCCccccccCCCCCCeEEccc
Q 030257           98 LAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSV  132 (180)
Q Consensus        98 ~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~  132 (180)
                      +++++.+++..+ +.......+.+. +++.+.+..
T Consensus        80 ~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   80 CTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             -TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             cccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            666666666543 332223344444 566665544

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.17  E-value=2.9e-06  Score=42.72  Aligned_cols=36  Identities=47%  Similarity=0.637  Sum_probs=19.5

Q ss_pred             CCCeEEcccCcCCCCCCcccccCCCCccEEEccCCccc
Q 030257          124 SLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS  161 (180)
Q Consensus       124 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  161 (180)
                      +|++|++++|.+++  ++..+..+++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCCC
Confidence            45566666666652  3444556666666666666655

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.12  E-value=5.1e-06  Score=41.78  Aligned_cols=13  Identities=62%  Similarity=0.705  Sum_probs=5.3

Q ss_pred             CCCccEEEccccc
Q 030257           26 LSNLESLFLKNNM   38 (180)
Q Consensus        26 l~~L~~L~l~~~~   38 (180)
                      |++|++|++++|.
T Consensus        23 l~~L~~L~l~~N~   35 (44)
T PF12799_consen   23 LPNLETLNLSNNP   35 (44)
T ss_dssp             CTTSSEEEETSSC
T ss_pred             CCCCCEEEecCCC
Confidence            4444444444433

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.09  E-value=2e-05  Score=49.37  Aligned_cols=117  Identities=23%  Similarity=0.303  Sum_probs=66.0

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   81 (180)
                      ++|+.+.+.. .+. .++...+.++..++.+.+.++ +......+|..+.+++.+.+.+ .........+..+.+++.+.
T Consensus        12 ~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~   87 (129)
T PF13306_consen   12 SNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNID   87 (129)
T ss_dssp             TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEE
T ss_pred             CCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccc
Confidence            5788888865 343 678888888889999999875 5555667788898999999977 44435556778899999999


Q ss_pred             eeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCC
Q 030257           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSL  125 (180)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L  125 (180)
                      +..+ +.......+.++ +++.+.+.. .+.......|.++++|
T Consensus        88 ~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   88 IPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             ETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            9765 443445567777 899998865 3433334556665554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.92  E-value=2.8e-07  Score=57.59  Aligned_cols=104  Identities=33%  Similarity=0.371  Sum_probs=61.7

Q ss_pred             ccEEEcccccCCCCCCcc---ccCCCCccEEEecccccccccchhhh-ccCCccEEEeeCCcCCCCcchhhcCCCcccEE
Q 030257           29 LESLFLKNNMFHGKIPST---LSNCKRLRNISLSLDDFSGTIPKEIG-NVTKLIRLYLRGNQLQGEIPEELGNLAELEML  104 (180)
Q Consensus        29 L~~L~l~~~~~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l  104 (180)
                      +..++++.|++- ..++.   +.....|...++++|.+.. .|..|. ..+.++.+++.+|.+. ..|..+..++.|+.+
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL  105 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence            344555555443 22222   2334455566777777663 333333 4456777777777776 456667777777777


Q ss_pred             EecCCcCCCCccccccCCCCCCeEEcccCcCC
Q 030257          105 WLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT  136 (180)
Q Consensus       105 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  136 (180)
                      ++..|++. ..|..+..+.++..|+..+|...
T Consensus       106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen  106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             ccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            77777776 34444444666777777776654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.87  E-value=3.6e-06  Score=59.38  Aligned_cols=109  Identities=23%  Similarity=0.266  Sum_probs=71.1

Q ss_pred             CCCccEEEcccccCCCC-CCcccc-CCCCccEEEeccccccc--ccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcc
Q 030257           26 LSNLESLFLKNNMFHGK-IPSTLS-NCKRLRNISLSLDDFSG--TIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAEL  101 (180)
Q Consensus        26 l~~L~~L~l~~~~~~~~-~~~~~~-~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L  101 (180)
                      .+.++.+.+.++.|... ....|+ .+..++.+++.+|.++.  .....+..+|.+++|+++.|.+.+.+........+|
T Consensus        44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl  123 (418)
T KOG2982|consen   44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNL  123 (418)
T ss_pred             ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccce
Confidence            45566677777766522 112222 46778888888888873  233456778889999998888764332222356788


Q ss_pred             cEEEecCCcCCCCcc-ccccCCCCCCeEEcccCc
Q 030257          102 EMLWLQNNFLTRAIP-SSIFNLSSLSNLDLSVNN  134 (180)
Q Consensus       102 ~~l~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~  134 (180)
                      +.+.+.+..+.-.-. ..+..+|++++++++.|.
T Consensus       124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~  157 (418)
T KOG2982|consen  124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS  157 (418)
T ss_pred             EEEEEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence            888888777653333 345577888888888874

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.80  E-value=1.3e-05  Score=55.28  Aligned_cols=108  Identities=20%  Similarity=0.135  Sum_probs=67.1

Q ss_pred             ccCCCCccEEEecccccccccchhhhccCCccEEEeeCC--cCCCCcchhhcCCCcccEEEecCCcCCCCccc---cccC
Q 030257           47 LSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGN--QLQGEIPEELGNLAELEMLWLQNNFLTRAIPS---SIFN  121 (180)
Q Consensus        47 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~--~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~---~l~~  121 (180)
                      .-.+.+++.+.+.++++++.  ..+..+++|+.|.++.|  ++..-.+.-...+++|+++++++|++..  +.   .+..
T Consensus        39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~  114 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKE  114 (260)
T ss_pred             cccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhh
Confidence            34456677777777776532  44667888899998888  4432233334456889999999888853  32   3345


Q ss_pred             CCCCCeEEcccCcCCCCCC--cccccCCCCccEEEccCC
Q 030257          122 LSSLSNLDLSVNNLTGGII--PSLLGNQSSLQTLYLSYN  158 (180)
Q Consensus       122 ~~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~l~l~~n  158 (180)
                      +.+|..|+++.|..+...-  ...+.-+++|..+|-...
T Consensus       115 l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  115 LENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             hcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence            6677888888886653111  123455566666655443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.75  E-value=0.00024  Score=52.98  Aligned_cols=53  Identities=11%  Similarity=0.176  Sum_probs=29.7

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEeccc
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLD   61 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~   61 (180)
                      .+++.|++++|.+. .+| .+   .++|++|.+.+|.-....|..+  ..+|+.|.+.+|
T Consensus        52 ~~l~~L~Is~c~L~-sLP-~L---P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         52 RASGRLYIKDCDIE-SLP-VL---PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             cCCCEEEeCCCCCc-ccC-CC---CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            45667777777654 455 11   2357777776654333444333  246777777766

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.68  E-value=5.5e-05  Score=52.96  Aligned_cols=87  Identities=26%  Similarity=0.465  Sum_probs=45.6

Q ss_pred             CCceEEEeeCCeecccCchhhh---hcCCCccEEEcccccCC---C-------CCCccccCCCCccEEEecccccccccc
Q 030257            2 SSLLSIRFTNNTLFGELPPNFC---NHLSNLESLFLKNNMFH---G-------KIPSTLSNCKRLRNISLSLDDFSGTIP   68 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~---~~l~~L~~L~l~~~~~~---~-------~~~~~~~~l~~L~~L~l~~~~~~~~~~   68 (180)
                      ..++.+++++|.+.......+.   .+-++|++.++++--..   +       .+.+++.+||+++..++++|.+....+
T Consensus        30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~  109 (388)
T COG5238          30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP  109 (388)
T ss_pred             cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence            4567778888776532222222   22455556555543111   0       122345566777777777666554433


Q ss_pred             hh----hhccCCccEEEeeCCcCC
Q 030257           69 KE----IGNVTKLIRLYLRGNQLQ   88 (180)
Q Consensus        69 ~~----~~~l~~L~~l~l~~~~~~   88 (180)
                      ..    ++....+.+|.+.+|.+-
T Consensus       110 e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238         110 EELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             hHHHHHHhcCCCceeEEeecCCCC
Confidence            32    334456667766666543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.62  E-value=2.1e-06  Score=60.01  Aligned_cols=84  Identities=30%  Similarity=0.336  Sum_probs=45.3

Q ss_pred             CCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcc-hhhcCCCcccEE
Q 030257           26 LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIP-EELGNLAELEML  104 (180)
Q Consensus        26 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~l  104 (180)
                      +.+.+.|+..||.+.+.  .....|+.|+.|.++-|.+++.  ..+..+.+|+++++..|.+..... ..+.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            44555566666655422  1123566666666666666532  335566666666666666553211 234556666666


Q ss_pred             EecCCcCCC
Q 030257          105 WLQNNFLTR  113 (180)
Q Consensus       105 ~l~~~~~~~  113 (180)
                      ++..|+=.+
T Consensus        94 WL~ENPCc~  102 (388)
T KOG2123|consen   94 WLDENPCCG  102 (388)
T ss_pred             hhccCCccc
Confidence            666555544

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.40  E-value=0.0018  Score=48.56  Aligned_cols=116  Identities=22%  Similarity=0.312  Sum_probs=67.6

Q ss_pred             CCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCC-cCCCCcchhhcCCCcccEE
Q 030257           26 LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGN-QLQGEIPEELGNLAELEML  104 (180)
Q Consensus        26 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~-~~~~~~~~~~~~~~~L~~l  104 (180)
                      +.+++.|++++|.+. .+|.   --.+|+.|.+.+|.-....|+.+.  .+|+.|.+++| .+. ..|.      +|+.|
T Consensus        51 ~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe~L  117 (426)
T PRK15386         51 ARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVRSL  117 (426)
T ss_pred             hcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------ccceE
Confidence            788999999999776 4452   123699999998765445565442  57899998887 333 2332      35555


Q ss_pred             EecCCcCC--CCccccccC------------------CCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCC
Q 030257          105 WLQNNFLT--RAIPSSIFN------------------LSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYN  158 (180)
Q Consensus       105 ~l~~~~~~--~~~~~~l~~------------------~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n  158 (180)
                      ++..+...  ..+|..+..                  .++|++|++++|...  ..+..+  ..+|+.|+++.+
T Consensus       118 ~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i--~LP~~L--P~SLk~L~ls~n  187 (426)
T PRK15386        118 EIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI--ILPEKL--PESLQSITLHIE  187 (426)
T ss_pred             EeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc--cCcccc--cccCcEEEeccc
Confidence            55544321  122222111                  135777777776543  123222  246677776554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.33  E-value=1e-05  Score=56.62  Aligned_cols=99  Identities=23%  Similarity=0.272  Sum_probs=74.8

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEeccccccccc-chhhhccCCccEE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTI-PKEIGNVTKLIRL   80 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~l   80 (180)
                      .+.++|++-+|.+.+   ..+...|+.|++|.|+-|.|...  ..+..|++|++|++..|.|.... ...+.++++|+.|
T Consensus        19 ~~vkKLNcwg~~L~D---Isic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDD---ISICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHhhhhcccCCCccH---HHHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            356788888888762   45666799999999999998732  44678999999999999987432 2356789999999


Q ss_pred             EeeCCcCCCCcch-----hhcCCCcccEEE
Q 030257           81 YLRGNQLQGEIPE-----ELGNLAELEMLW  105 (180)
Q Consensus        81 ~l~~~~~~~~~~~-----~~~~~~~L~~l~  105 (180)
                      .+..|.+.+..+.     .++.+++|+.||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            9998876544332     355678888885

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.31  E-value=9.2e-05  Score=51.21  Aligned_cols=106  Identities=25%  Similarity=0.211  Sum_probs=68.4

Q ss_pred             CCCccEEEcccccCCCCCCccccCCCCccEEEeccc--ccccccchhhhccCCccEEEeeCCcCCCC-cchhhcCCCccc
Q 030257           26 LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLD--DFSGTIPKEIGNVTKLIRLYLRGNQLQGE-IPEELGNLAELE  102 (180)
Q Consensus        26 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~l~l~~~~~~~~-~~~~~~~~~~L~  102 (180)
                      +..|+.+++.+..++..  ..+-.+++|+.|.++.|  ++..-+.-....+++|+++.+++|.+... .......+.+|.
T Consensus        42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~  119 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK  119 (260)
T ss_pred             ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence            55677777766665421  22446788999999988  54433444445669999999999987621 223345667788


Q ss_pred             EEEecCCcCCCCcc---ccccCCCCCCeEEcccC
Q 030257          103 MLWLQNNFLTRAIP---SSIFNLSSLSNLDLSVN  133 (180)
Q Consensus       103 ~l~l~~~~~~~~~~---~~l~~~~~L~~L~l~~~  133 (180)
                      .|++..|..++...   ..|.-+++|.+++-...
T Consensus       120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             hhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence            88888887765221   24556677777765443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.87  E-value=0.00019  Score=54.95  Aligned_cols=130  Identities=26%  Similarity=0.137  Sum_probs=60.2

Q ss_pred             CCCccEEEcccccCCCC--CCccccCCCCccEEEeccc-cccccc----chhhhccCCccEEEeeCCc-CCCCcchhhc-
Q 030257           26 LSNLESLFLKNNMFHGK--IPSTLSNCKRLRNISLSLD-DFSGTI----PKEIGNVTKLIRLYLRGNQ-LQGEIPEELG-   96 (180)
Q Consensus        26 l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~-~~~~~~----~~~~~~l~~L~~l~l~~~~-~~~~~~~~~~-   96 (180)
                      .+.|+.+.+.++.....  .......++.|+.++++++ ......    ......+.+++.+++..+. ++......+. 
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            56666666665532211  2233345666666666652 111111    1122334566666666655 4433333322 


Q ss_pred             CCCcccEEEecCCc-CCCCcc-ccccCCCCCCeEEcccCcC-CCCCCcccccCCCCccEEEc
Q 030257           97 NLAELEMLWLQNNF-LTRAIP-SSIFNLSSLSNLDLSVNNL-TGGIIPSLLGNQSSLQTLYL  155 (180)
Q Consensus        97 ~~~~L~~l~l~~~~-~~~~~~-~~l~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~l~l  155 (180)
                      .|++|+.+.+.++. +++... .....++.|++|+++++.. ++..+......+++++.+.+
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~  328 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL  328 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence            25666666665555 343222 2334556666666666643 22222222333444444443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.18  E-value=0.0019  Score=49.49  Aligned_cols=113  Identities=24%  Similarity=0.103  Sum_probs=78.1

Q ss_pred             CCCCccEEEecccccccc--cchhhhccCCccEEEeeCC-c-CCCC---cchhhcCCCcccEEEecCCc-CCCCcccccc
Q 030257           49 NCKRLRNISLSLDDFSGT--IPKEIGNVTKLIRLYLRGN-Q-LQGE---IPEELGNLAELEMLWLQNNF-LTRAIPSSIF  120 (180)
Q Consensus        49 ~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~l~l~~~-~-~~~~---~~~~~~~~~~L~~l~l~~~~-~~~~~~~~l~  120 (180)
                      .++.++.+.+.++.....  .......+++|+.++++++ . ....   .......+.+++.++++.+. +++.....+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            468888888888754322  3345667899999999873 2 1111   11233456889999998887 5554443333


Q ss_pred             -CCCCCCeEEcccCc-CCCCCCcccccCCCCccEEEccCCccc
Q 030257          121 -NLSSLSNLDLSVNN-LTGGIIPSLLGNQSSLQTLYLSYNQLS  161 (180)
Q Consensus       121 -~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~l~l~~n~~~  161 (180)
                       .++.|++|.+..+. +++..+......++.|+.|++++|...
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence             47899999988786 777666667778899999999998654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.09  E-value=0.0012  Score=48.91  Aligned_cols=171  Identities=19%  Similarity=0.085  Sum_probs=93.1

Q ss_pred             ceEEEeeCCeeccc-CchhhhhcCCCccEEEcccccCC-CCCCccc-cCCCCccEEEeccccc-ccccchh-hhccCCcc
Q 030257            4 LLSIRFTNNTLFGE-LPPNFCNHLSNLESLFLKNNMFH-GKIPSTL-SNCKRLRNISLSLDDF-SGTIPKE-IGNVTKLI   78 (180)
Q Consensus         4 L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~-~~l~~L~~L~l~~~~~-~~~~~~~-~~~l~~L~   78 (180)
                      +.++++..|...++ -...+..++..|+.++.+++... +..-.++ .++++|+.+-+..|+- +..-... -.++++|+
T Consensus       270 i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le  349 (483)
T KOG4341|consen  270 ILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLE  349 (483)
T ss_pred             hhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhh
Confidence            33455555542222 22333445667788888776433 2222222 3577888888888763 1111111 23567788


Q ss_pred             EEEeeCCcCCCC--cchhhcCCCcccEEEecCCcC-CCCc----cccccCCCCCCeEEcccCcCCCCCCcccccCCCCcc
Q 030257           79 RLYLRGNQLQGE--IPEELGNLAELEMLWLQNNFL-TRAI----PSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQ  151 (180)
Q Consensus        79 ~l~l~~~~~~~~--~~~~~~~~~~L~~l~l~~~~~-~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  151 (180)
                      .+++.++.....  ..+.-.+++.++.+.++.+.. ++..    ...-.++..+..+-++++..........+..+++|+
T Consensus       350 ~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Le  429 (483)
T KOG4341|consen  350 RLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLE  429 (483)
T ss_pred             hhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccc
Confidence            888777663211  223335677788887775533 2221    112234567778888887543223445677788888


Q ss_pred             EEEccCCc-ccCCCChhhhhhccc
Q 030257          152 TLYLSYNQ-LSGPIPSFILCKFSL  174 (180)
Q Consensus       152 ~l~l~~n~-~~~~~~~~~~~~~~~  174 (180)
                      .+++.+++ ++....+.+..+.+.
T Consensus       430 ri~l~~~q~vtk~~i~~~~~~lp~  453 (483)
T KOG4341|consen  430 RIELIDCQDVTKEAISRFATHLPN  453 (483)
T ss_pred             eeeeechhhhhhhhhHHHHhhCcc
Confidence            88888874 443333444444333

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.01  E-value=0.0033  Score=26.33  Aligned_cols=19  Identities=47%  Similarity=0.536  Sum_probs=11.5

Q ss_pred             CccEEEccCCcccCCCChhh
Q 030257          149 SLQTLYLSYNQLSGPIPSFI  168 (180)
Q Consensus       149 ~L~~l~l~~n~~~~~~~~~~  168 (180)
                      +|+.|++++|.++ .+|..+
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             TESEEEETSSEES-EEGTTT
T ss_pred             CccEEECCCCcCE-eCChhh
Confidence            3566777777666 555543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=95.32  E-value=0.0046  Score=46.01  Aligned_cols=155  Identities=21%  Similarity=0.165  Sum_probs=95.8

Q ss_pred             CCceEEEeeCCeecc-cCchhhhhcCCCccEEEcccccC-CCCCCccc-cCCCCccEEEecccccccc--cchhhhccCC
Q 030257            2 SSLLSIRFTNNTLFG-ELPPNFCNHLSNLESLFLKNNMF-HGKIPSTL-SNCKRLRNISLSLDDFSGT--IPKEIGNVTK   76 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~-~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~   76 (180)
                      ..|++++.+++...+ .+......+..+|+.+-+.+++. .+.-...+ .+++.|+.+++.++.....  +...-.+++.
T Consensus       294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~  373 (483)
T KOG4341|consen  294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR  373 (483)
T ss_pred             hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence            356777777765332 23344456688999999998863 22111112 4688999999998876421  1112235788


Q ss_pred             ccEEEeeCCcC-CCCcchhh----cCCCcccEEEecCCcCCC-CccccccCCCCCCeEEcccCc-CCCCCCcccccCCCC
Q 030257           77 LIRLYLRGNQL-QGEIPEEL----GNLAELEMLWLQNNFLTR-AIPSSIFNLSSLSNLDLSVNN-LTGGIIPSLLGNQSS  149 (180)
Q Consensus        77 L~~l~l~~~~~-~~~~~~~~----~~~~~L~~l~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~  149 (180)
                      ++++.++.+.. +......+    ..+..+..+.+.+++... ....-+..++.|+.+++.++. ++...+..+-.++++
T Consensus       374 lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~  453 (483)
T KOG4341|consen  374 LRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPN  453 (483)
T ss_pred             hccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCcc
Confidence            99999987753 22211111    234668889998887742 333456678889999998884 554445555566777


Q ss_pred             ccEEEcc
Q 030257          150 LQTLYLS  156 (180)
Q Consensus       150 L~~l~l~  156 (180)
                      ++..-+.
T Consensus       454 i~v~a~~  460 (483)
T KOG4341|consen  454 IKVHAYF  460 (483)
T ss_pred             ceehhhc
Confidence            6665443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=95.01  E-value=0.021  Score=24.81  Aligned_cols=22  Identities=32%  Similarity=0.570  Sum_probs=14.1

Q ss_pred             CCCceEEEeeCCeecccCchhhh
Q 030257            1 MSSLLSIRFTNNTLFGELPPNFC   23 (180)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~   23 (180)
                      |++|+.|++.+|.+. .+|..+|
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHc
Confidence            456777777777665 5666554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=95.01  E-value=0.021  Score=24.81  Aligned_cols=22  Identities=32%  Similarity=0.570  Sum_probs=14.1

Q ss_pred             CCCceEEEeeCCeecccCchhhh
Q 030257            1 MSSLLSIRFTNNTLFGELPPNFC   23 (180)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~   23 (180)
                      |++|+.|++.+|.+. .+|..+|
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHc
Confidence            456777777777665 5666554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.59  E-value=0.0041  Score=41.80  Aligned_cols=84  Identities=24%  Similarity=0.103  Sum_probs=47.8

Q ss_pred             CccEEEeeCCcCCCCcchhhcCCCcccEEEecCCcCCC-Ccccccc-CCCCCCeEEcccC-cCCCCCCcccccCCCCccE
Q 030257           76 KLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTR-AIPSSIF-NLSSLSNLDLSVN-NLTGGIIPSLLGNQSSLQT  152 (180)
Q Consensus        76 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~l~-~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~  152 (180)
                      .++.++-+++.+....-+.+++++.++.+.+.+|..-+ ...+-+. -.++|+.|++++| +|++. -...+..+++|+.
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~-GL~~L~~lknLr~  180 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG-GLACLLKLKNLRR  180 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh-HHHHHHHhhhhHH
Confidence            45666666666655555556666666777666664421 1111111 3467777777777 46654 3345666677777


Q ss_pred             EEccCCcc
Q 030257          153 LYLSYNQL  160 (180)
Q Consensus       153 l~l~~n~~  160 (180)
                      |++++=+.
T Consensus       181 L~l~~l~~  188 (221)
T KOG3864|consen  181 LHLYDLPY  188 (221)
T ss_pred             HHhcCchh
Confidence            76665443

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.58  E-value=0.023  Score=22.10  Aligned_cols=12  Identities=33%  Similarity=0.600  Sum_probs=4.9

Q ss_pred             CceEEEeeCCee
Q 030257            3 SLLSIRFTNNTL   14 (180)
Q Consensus         3 ~L~~L~l~~~~~   14 (180)
                      +|+.|++++|.+
T Consensus         2 ~L~~L~l~~n~L   13 (17)
T PF13504_consen    2 NLRTLDLSNNRL   13 (17)
T ss_dssp             T-SEEEETSS--
T ss_pred             ccCEEECCCCCC
Confidence            455555555554

...

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=93.98  E-value=0.011  Score=25.21  Aligned_cols=18  Identities=39%  Similarity=0.403  Sum_probs=8.7

Q ss_pred             CCccEEEccCCcccCCCC
Q 030257          148 SSLQTLYLSYNQLSGPIP  165 (180)
Q Consensus       148 ~~L~~l~l~~n~~~~~~~  165 (180)
                      ++|+.|++++|.+++...
T Consensus         2 ~~L~~L~l~~n~i~~~g~   19 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGA   19 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHH
T ss_pred             CCCCEEEccCCcCCHHHH
Confidence            455666666666554433

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.75  E-value=0.00036  Score=53.43  Aligned_cols=39  Identities=36%  Similarity=0.392  Sum_probs=20.6

Q ss_pred             CCCCeEEcccCcCCCCC---CcccccCCCCccEEEccCCccc
Q 030257          123 SSLSNLDLSVNNLTGGI---IPSLLGNQSSLQTLYLSYNQLS  161 (180)
Q Consensus       123 ~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~l~l~~n~~~  161 (180)
                      ++++++++++|.+++..   ....+..++.++.++++.|++.
T Consensus       262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            45566666666655331   1123344556666666666554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.57  E-value=0.013  Score=39.47  Aligned_cols=73  Identities=19%  Similarity=0.126  Sum_probs=53.4

Q ss_pred             CcccEEEecCCcCCCCccccccCCCCCCeEEcccCc-CCCCCCcccccCCCCccEEEccCC-cccCCCChhhhhh
Q 030257           99 AELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNN-LTGGIIPSLLGNQSSLQTLYLSYN-QLSGPIPSFILCK  171 (180)
Q Consensus        99 ~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~l~l~~n-~~~~~~~~~~~~~  171 (180)
                      ..++.++-+++.|.++.-+-+..++.++.|.+.+|. +.|+.+...-...++|+.|++++| .|++.--.++..+
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~l  175 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKL  175 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHh
Confidence            357889999999987777778888999999998884 555544444445679999999999 4665444444433

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=88.27  E-value=0.0016  Score=50.03  Aligned_cols=168  Identities=23%  Similarity=0.157  Sum_probs=102.9

Q ss_pred             ceEEEeeCCeecccCchhh---hhcCCCccEEEcccccCCCCCC----ccccCC-CCccEEEecccccccc----cchhh
Q 030257            4 LLSIRFTNNTLFGELPPNF---CNHLSNLESLFLKNNMFHGKIP----STLSNC-KRLRNISLSLDDFSGT----IPKEI   71 (180)
Q Consensus         4 L~~L~l~~~~~~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~----~~~~~l-~~L~~L~l~~~~~~~~----~~~~~   71 (180)
                      +..+.+.+|.+.......+   ....++|+.|++++|.+.+...    ..+... ..+++|++..|.+...    ....+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            5566777777764322222   3346788889999998773322    222232 4567777777777632    23345


Q ss_pred             hccCCccEEEeeCCcCCCC----cchhhc----CCCcccEEEecCCcCCCCcc----ccccCCCC-CCeEEcccCcCCCC
Q 030257           72 GNVTKLIRLYLRGNQLQGE----IPEELG----NLAELEMLWLQNNFLTRAIP----SSIFNLSS-LSNLDLSVNNLTGG  138 (180)
Q Consensus        72 ~~l~~L~~l~l~~~~~~~~----~~~~~~----~~~~L~~l~l~~~~~~~~~~----~~l~~~~~-L~~L~l~~~~~~~~  138 (180)
                      .....++++++..|.+...    .+..+.    ...+++++.+.+|.++....    ..+...++ +.++++..|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            5567788888888876321    222333    35678889998888763211    23344455 67788988887643


Q ss_pred             C---CcccccCC-CCccEEEccCCcccCCCChhhhhh
Q 030257          139 I---IPSLLGNQ-SSLQTLYLSYNQLSGPIPSFILCK  171 (180)
Q Consensus       139 ~---~~~~~~~~-~~L~~l~l~~n~~~~~~~~~~~~~  171 (180)
                      .   ....+..+ ..++.+++..|.+.+.-...+...
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~  285 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEV  285 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHH
Confidence            1   12234444 577999999999987766665443

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=81.17  E-value=1.3  Score=19.50  Aligned_cols=13  Identities=62%  Similarity=0.695  Sum_probs=7.3

Q ss_pred             CCCeEEcccCcCC
Q 030257          124 SLSNLDLSVNNLT  136 (180)
Q Consensus       124 ~L~~L~l~~~~~~  136 (180)
                      +|++|++++|.+.
T Consensus         3 ~L~~LdL~~N~i~   15 (28)
T smart00368        3 SLRELDLSNNKLG   15 (28)
T ss_pred             ccCEEECCCCCCC
Confidence            4555566555554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	180
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-21
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-21
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		5e-09

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/166 (40%), Positives = 91/166 (54%), Gaps = 2/166 (1%)
Query: 2   SSLLSIRFTNNTLFGELPPNFCNHLSN-LESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +SLL++  ++N   G + PN C +  N L+ L+L+NN F GKIP TLSNC  L ++ LS 
Sbjct: 368 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 427
Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPXXXX 120
           +  SGTIP  +G+++KL  L L  N L+GEIP+EL  +  LE L L  N LT  IP    
Sbjct: 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 487
Query: 121 XXXXXXXXXXXXXXXTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPS 166
                          TG  IP  +G   +L  L LS N  SG IP+
Sbjct: 488 NCTNLNWISLSNNRLTGE-IPKWIGRLENLAILKLSNNSFSGNIPA 532

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/166 (40%), Positives = 91/166 (54%), Gaps = 2/166 (1%)
Query: 2   SSLLSIRFTNNTLFGELPPNFCNHLSN-LESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +SLL++  ++N   G + PN C +  N L+ L+L+NN F GKIP TLSNC  L ++ LS 
Sbjct: 365 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 424
Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPXXXX 120
           +  SGTIP  +G+++KL  L L  N L+GEIP+EL  +  LE L L  N LT  IP    
Sbjct: 425 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 484
Query: 121 XXXXXXXXXXXXXXXTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPS 166
                          TG  IP  +G   +L  L LS N  SG IP+
Sbjct: 485 NCTNLNWISLSNNRLTGE-IPKWIGRLENLAILKLSNNSFSGNIPA 529

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 5/166 (3%)
Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRL-RNISLS 59
           + +L+++ F+ N L G LPP+  + L NL  +    N   G IP +  +  +L  ++++S
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182
Query: 60  LDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPXXX 119
            +  +G IP    N+  L  + L  N L+G+     G+    + + L  N L  A     
Sbjct: 183 RNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL--AFDLGK 239
Query: 120 XXXXXXXXXXXXXXXXTGGIIPSLLGNQSSLQTLYLSYNQLSGPIP 165
                             G +P  L     L +L +S+N L G IP
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	180
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-44
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-43
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-38
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-32
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-42
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-39
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-38
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-36
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-36
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-36
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-34
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-33
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-32
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-32
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-28
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-25
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-27
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-25
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-25
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-23
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-22
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-22
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-22
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-20
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-15
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-10
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	9e-10
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	8e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	5e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-08
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	6e-08
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	8e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	4e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	3e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	9e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  148 bits (377), Expect = 1e-44
 Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 5/173 (2%)

Query: 1   MSSLLSIRFTN-NTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLS 59
           +  L  +     N L G +PP     L+ L  L++ +    G IP  LS  K L  +  S
Sbjct: 75  LPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133

Query: 60  LDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAEL-EMLWLQNNFLTRAIPSS 118
            +  SGT+P  I ++  L+ +   GN++ G IP+  G+ ++L   + +  N LT  IP +
Sbjct: 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193

Query: 119 IFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCK 171
             NL+ L+ +DLS N L G     L G+  + Q ++L+ N L+  +    L K
Sbjct: 194 FANLN-LAFVDLSRNMLEGDA-SVLFGSDKNTQKIHLAKNSLAFDLGKVGLSK 244

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  144 bits (365), Expect = 6e-43
 Identities = 40/169 (23%), Positives = 73/169 (43%), Gaps = 5/169 (2%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           ++ L  +  T+  + G +P      +  L +L    N   G +P ++S+   L  I+   
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQ-IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158

Query: 61  DDFSGTIPKEIGNVTKLIR-LYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSI 119
           +  SG IP   G+ +KL   + +  N+L G+IP    NL  L  + L  N L        
Sbjct: 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLF 217

Query: 120 FNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFI 168
            +  +   + L+ N+L   +   + G   +L  L L  N++ G +P  +
Sbjct: 218 GSDKNTQKIHLAKNSLAFDL-GKV-GLSKNLNGLDLRNNRIYGTLPQGL 264

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  132 bits (334), Expect = 3e-38
 Identities = 44/175 (25%), Positives = 74/175 (42%), Gaps = 5/175 (2%)

Query: 6   SIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHG--KIPSTLSNCKRLRNISLS-LDD 62
           +    N T  G L          + +L L          IPS+L+N   L  + +  +++
Sbjct: 30  TTDCCNRTWLGVLCDTD-TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN 88

Query: 63  FSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNL 122
             G IP  I  +T+L  LY+    + G IP+ L  +  L  L    N L+  +P SI +L
Sbjct: 89  LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148

Query: 123 SSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFI-LCKFSLLD 176
            +L  +    N ++G I  S         ++ +S N+L+G IP        + +D
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVD 203

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  115 bits (290), Expect = 9e-32
 Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 6/168 (3%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           + +L+ I F  N + G +P ++ +      S+ +  N   GKIP T +N   L  + LS 
Sbjct: 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR 206

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           +   G      G+     +++L  N L  ++ + +G    L  L L+NN +   +P  + 
Sbjct: 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLT 265

Query: 121 NLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQL--SGPIPS 166
            L  L +L++S NNL G  IP   GN         + N+     P+P+
Sbjct: 266 QLKFLHSLNVSFNNLCGE-IPQ-GGNLQRFDVSAYANNKCLCGSPLPA 311

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  148 bits (375), Expect = 7e-42
 Identities = 75/175 (42%), Positives = 104/175 (59%), Gaps = 3/175 (1%)

Query: 2   SSLLSIRFTNNTLFGELPPNFCN-HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +SLL++  ++N   G + PN C    + L+ L+L+NN F GKIP TLSNC  L ++ LS 
Sbjct: 368 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 427

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           +  SGTIP  +G+++KL  L L  N L+GEIP+EL  +  LE L L  N LT  IPS + 
Sbjct: 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 487

Query: 121 NLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKFSLL 175
           N ++L+ + LS N LTG  IP  +G   +L  L LS N  SG IP+ +      L
Sbjct: 488 NCTNLNWISLSNNRLTGE-IPKWIGRLENLAILKLSNNSFSGNIPAEL-GDCRSL 540

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  140 bits (355), Expect = 3e-39
 Identities = 62/170 (36%), Positives = 92/170 (54%), Gaps = 3/170 (1%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKR--LRNISL 58
           M  L  +  + N   GELP +  N  ++L +L L +N F G I   L    +  L+ + L
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401

Query: 59  SLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSS 118
             + F+G IP  + N ++L+ L+L  N L G IP  LG+L++L  L L  N L   IP  
Sbjct: 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 461

Query: 119 IFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFI 168
           +  + +L  L L  N+LT G IPS L N ++L  + LS N+L+G IP +I
Sbjct: 462 LMYVKTLETLILDFNDLT-GEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  136 bits (346), Expect = 6e-38
 Identities = 50/169 (29%), Positives = 76/169 (44%), Gaps = 5/169 (2%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
             +L  +  ++N     +P  F    S L+ L +  N   G     +S C  L+ +++S 
Sbjct: 199 CVNLEFLDVSSNNFSTGIP--FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEEL-GNLAELEMLWLQNNFLTRAIPSSI 119
           + F G IP     +  L  L L  N+  GEIP+ L G    L  L L  N    A+P   
Sbjct: 257 NQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314

Query: 120 FNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFI 168
            + S L +L LS NN +G +    L     L+ L LS+N+ SG +P  +
Sbjct: 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL 363

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  133 bits (337), Expect = 1e-36
 Identities = 58/168 (34%), Positives = 86/168 (51%), Gaps = 6/168 (3%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
            S L+S+  + N L G +P +  + LS L  L L  NM  G+IP  L   K L  + L  
Sbjct: 417 CSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           +D +G IP  + N T L  + L  N+L GEIP+ +G L  L +L L NN  +  IP+ + 
Sbjct: 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535

Query: 121 NLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFI 168
           +  SL  LDL+ N   G  IP+ +  QS      ++ N ++G    +I
Sbjct: 536 DCRSLIWLDLNTNLFNGT-IPAAMFKQSGK----IAANFIAGKRYVYI 578

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  133 bits (336), Expect = 1e-36
 Identities = 55/170 (32%), Positives = 82/170 (48%), Gaps = 5/170 (2%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
            S+L  +  + N L G+         + L+ L + +N F G IP      K L+ +SL+ 
Sbjct: 222 CSALQHLDISGNKLSGDFSRAIST-CTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAE 278

Query: 61  DDFSGTIPKEI-GNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIP-SS 118
           + F+G IP  + G    L  L L GN   G +P   G+ + LE L L +N  +  +P  +
Sbjct: 279 NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT 338

Query: 119 IFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFI 168
           +  +  L  LDLS N  +G +  SL    +SL TL LS N  SGPI   +
Sbjct: 339 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  131 bits (332), Expect = 4e-36
 Identities = 48/183 (26%), Positives = 77/183 (42%), Gaps = 9/183 (4%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTL---SNCKRLRNIS 57
            S L  +  ++NTL      +    L++LE L L  N   G           C  L++++
Sbjct: 125 CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLA 184

Query: 58  LSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPS 117
           +S +  SG +   +     L  L +  N     IP  LG+ + L+ L +  N L+     
Sbjct: 185 ISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSR 241

Query: 118 SIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKFSLLDN 177
           +I   + L  L++S N   G I P  L    SLQ L L+ N+ +G IP F+      L  
Sbjct: 242 AISTCTELKLLNISSNQFVGPIPPLPL---KSLQYLSLAENKFTGEIPDFLSGACDTLTG 298

Query: 178 IRF 180
           +  
Sbjct: 299 LDL 301

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  126 bits (319), Expect = 2e-34
 Identities = 46/181 (25%), Positives = 76/181 (41%), Gaps = 9/181 (4%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFC-NHLSNLESLFLKNNMFHGKIP-STLSNCKRLRNISL 58
            +SL S+  + N+L G +         S L+ L + +N        S       L  + L
Sbjct: 99  SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL 158

Query: 59  SLDDFSGTIPKEI---GNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAI 115
           S +  SG             +L  L + GN++ G++   +     LE L + +N  +  I
Sbjct: 159 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGI 216

Query: 116 PSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKFSLL 175
           P  + + S+L +LD+S N L+G      +   + L+ L +S NQ  GPIP   L     L
Sbjct: 217 P-FLGDCSALQHLDISGNKLSGD-FSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYL 274

Query: 176 D 176
            
Sbjct: 275 S 275

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  123 bits (310), Expect = 4e-33
 Identities = 56/189 (29%), Positives = 74/189 (39%), Gaps = 22/189 (11%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +S L  ++   N L GE+P      +  LE+L L  N   G+IPS LSNC  L  ISLS 
Sbjct: 441 LSKLRDLKLWLNMLEGEIPQELMY-VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 499

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           +  +G IPK IG +  L  L L  N   G IP ELG+   L  L L  N     IP+++F
Sbjct: 500 NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559

Query: 121 NLS--------------------SLSNLDLSVNNLT-GGIIPSLLGNQSSLQTLYLSYNQ 159
             S                           + N L   GI    L   S+     ++   
Sbjct: 560 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRV 619

Query: 160 LSGPIPSFI 168
             G      
Sbjct: 620 YGGHTSPTF 628

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  121 bits (305), Expect = 2e-32
 Identities = 41/190 (21%), Positives = 77/190 (40%), Gaps = 24/190 (12%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRL------- 53
           + +L  ++ +NN+  G +P    +   +L  L L  N+F+G IP+ +             
Sbjct: 513 LENLAILKLSNNSFSGNIPAELGD-CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA 571

Query: 54  ---------------RNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNL 98
                           + + +L +F G   +++  ++      +      G       N 
Sbjct: 572 GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631

Query: 99  AELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYN 158
             +  L +  N L+  IP  I ++  L  L+L  N+++G I P  +G+   L  L LS N
Sbjct: 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI-PDEVGDLRGLNILDLSSN 690

Query: 159 QLSGPIPSFI 168
           +L G IP  +
Sbjct: 691 KLDGRIPQAM 700

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  121 bits (305), Expect = 2e-32
 Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 4/166 (2%)

Query: 3   SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNM--FHGKIPSTLSNCKRLRNISLSL 60
              S +   N + G+      N     +      N+  F G     L+        +++ 
Sbjct: 559 FKQSGKIAANFIAGKRYVYIKN-DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
             + G       N   ++ L +  N L G IP+E+G++  L +L L +N ++ +IP  + 
Sbjct: 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG 677

Query: 121 NLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPS 166
           +L  L+ LDLS N L G  IP  +   + L  + LS N LSGPIP 
Sbjct: 678 DLRGLNILDLSSNKLDGR-IPQAMSALTMLTEIDLSNNNLSGPIPE 722

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  108 bits (272), Expect = 5e-28
 Identities = 40/162 (24%), Positives = 67/162 (41%), Gaps = 11/162 (6%)

Query: 12  NTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIP--K 69
           N  F  +  +  + L+ LESLFL N+  +G +         L ++ LS +  SG +    
Sbjct: 63  NVGFSAVSSSLLS-LTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVTTLT 120

Query: 70  EIGNVTKLIRLYLRGNQLQGEIP-EELGNLAELEMLWLQNNFLTRAIPSSIF---NLSSL 125
            +G+ + L  L +  N L           L  LE+L L  N ++ A             L
Sbjct: 121 SLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGEL 180

Query: 126 SNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSF 167
            +L +S N ++G  +   +    +L+ L +S N  S  IP  
Sbjct: 181 KHLAISGNKISGD-VD--VSRCVNLEFLDVSSNNFSTGIPFL 219

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  101 bits (253), Expect = 2e-25
 Identities = 37/158 (23%), Positives = 68/158 (43%), Gaps = 6/158 (3%)

Query: 24  NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR 83
           + +++++      N+    + S+L +   L ++ LS    +G++         L  L L 
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLS 108

Query: 84  GNQLQGEIPE--ELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNNLTGGII 140
            N L G +     LG+ + L+ L + +N L      S    L+SL  LDLS N+++G  +
Sbjct: 109 RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANV 168

Query: 141 PSL--LGNQSSLQTLYLSYNQLSGPIPSFILCKFSLLD 176
                      L+ L +S N++SG +          LD
Sbjct: 169 VGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLD 206

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 79.2 bits (196), Expect = 7e-18
 Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 5/131 (3%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +S+      T+    G   P F N   ++  L +  NM  G IP  + +   L  ++L  
Sbjct: 607 LSTRNPCNITSRVYGGHTSPTFDN-NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH 665

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPS--- 117
           +D SG+IP E+G++  L  L L  N+L G IP+ +  L  L  + L NN L+  IP    
Sbjct: 666 NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQ 725

Query: 118 -SIFNLSSLSN 127
              F  +   N
Sbjct: 726 FETFPPAKFLN 736

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  100 bits (252), Expect = 2e-25
 Identities = 34/167 (20%), Positives = 61/167 (36%), Gaps = 1/167 (0%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +  L  + F ++ L      +    L NL  L + +           +    L  + ++ 
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454

Query: 61  DDFSGTIPKEI-GNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSI 119
           + F      +I   +  L  L L   QL+   P    +L+ L++L + +N          
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 514

Query: 120 FNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPS 166
             L+SL  LD S+N++       L    SSL  L L+ N  +     
Sbjct: 515 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 561

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  100 bits (251), Expect = 3e-25
 Identities = 28/140 (20%), Positives = 55/140 (39%)

Query: 27  SNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQ 86
            + ++L L  N        +  +   L+ + LS  +          +++ L  L L GN 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 87  LQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGN 146
           +Q         L+ L+ L      L       I +L +L  L+++ N +    +P    N
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 147 QSSLQTLYLSYNQLSGPIPS 166
            ++L+ L LS N++     +
Sbjct: 148 LTNLEHLDLSSNKIQSIYCT 167

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 95.1 bits (237), Expect = 2e-23
 Identities = 40/177 (22%), Positives = 66/177 (37%), Gaps = 5/177 (2%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIP-STLSNCKRLRNISLS 59
            +SL  +  + N +   +  NF   L  LE L  +++        S   + + L  + +S
Sbjct: 372 TTSLKYLDLSFNGVIT-MSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429

Query: 60  LDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEI-PEELGNLAELEMLWLQNNFLTRAIPSS 118
                         ++ L  L + GN  Q    P+    L  L  L L    L +  P++
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489

Query: 119 IFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKFSLL 175
             +LSSL  L++S NN    +        +SLQ L  S N +       +    S L
Sbjct: 490 FNSLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 545

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 90.9 bits (226), Expect = 6e-22
 Identities = 36/174 (20%), Positives = 63/174 (36%), Gaps = 5/174 (2%)

Query: 3   SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDD 62
             L +     +  G    +     ++L+ L L  N     + S     ++L ++     +
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFG-TTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSN 407

Query: 63  FSGTIPKEI-GNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF- 120
                   +  ++  LI L +     +         L+ LE+L +  N         IF 
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467

Query: 121 NLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKFSL 174
            L +L+ LDLS   L   + P+   + SSLQ L +S+N           C  SL
Sbjct: 468 ELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 520

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 78.1 bits (193), Expect = 2e-17
 Identities = 29/156 (18%), Positives = 58/156 (37%), Gaps = 5/156 (3%)

Query: 25  HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84
            + N+    ++ N +   IP  L      +N+ LS +           +  +L  L L  
Sbjct: 6   VVPNITYQCMELNFYK--IPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR 61

Query: 85  NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLL 144
            ++Q        +L+ L  L L  N +      +   LSSL  L     NL   +    +
Sbjct: 62  CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPI 120

Query: 145 GNQSSLQTLYLSYNQLSGPIPSFILCKFSLLDNIRF 180
           G+  +L+ L +++N +            + L+++  
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 76.2 bits (188), Expect = 7e-17
 Identities = 30/185 (16%), Positives = 53/185 (28%), Gaps = 20/185 (10%)

Query: 3   SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIP-----------------S 45
           ++   R      + +   +  N L+N+ S  L +                          
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG 317

Query: 46  TLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQ--GEIPEELGNLAELEM 103
                K      L+     G       ++  L  L L  N L   G   +       L+ 
Sbjct: 318 QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377

Query: 104 LWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGP 163
           L L  N +   + S+   L  L +LD   +NL      S+  +  +L  L +S+      
Sbjct: 378 LDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436

Query: 164 IPSFI 168
                
Sbjct: 437 FNGIF 441

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 72.8 bits (179), Expect = 1e-15
 Identities = 35/188 (18%), Positives = 70/188 (37%), Gaps = 12/188 (6%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           + +L  +   +N +     P + ++L+NLE L L +N       + L    ++  ++LSL
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182

Query: 61  D---DFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEE-LGNLAELEMLWLQNN------F 110
           D   +    I        +L +L LR N     + +  +  LA LE+  L          
Sbjct: 183 DLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242

Query: 111 LTRAIPSSIFNLSSL--SNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFI 168
           L +   S++  L +L      L+  +     I  L    +++ +  L    +        
Sbjct: 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY 302

Query: 169 LCKFSLLD 176
              +  L+
Sbjct: 303 NFGWQHLE 310

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 67.7 bits (166), Expect = 6e-14
 Identities = 27/148 (18%), Positives = 48/148 (32%), Gaps = 3/148 (2%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +SSL  ++   N+      P+    L NL  L L         P+  ++   L+ +++S 
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAE-LEMLWLQNNFLTRAIPSSI 119
           ++F          +  L  L    N +     +EL +    L  L L  N          
Sbjct: 504 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQS 563

Query: 120 F--NLSSLSNLDLSVNNLTGGIIPSLLG 145
           F   +     L + V  +         G
Sbjct: 564 FLQWIKDQRQLLVEVERMECATPSDKQG 591

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.7 bits (114), Expect = 5e-07
 Identities = 32/184 (17%), Positives = 56/184 (30%), Gaps = 18/184 (9%)

Query: 3   SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPST----LSNCKRLRNISL 58
             LS+  + N +    P  F      L  L L+NN     +  T    L+  +  R +  
Sbjct: 178 LNLSLDLSLNPMNFIQPGAF--KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235

Query: 59  SLDDFSGTIPKEIGNVTKLIRLYLRGNQLQ------GEIPEELGNLAELEMLWLQNNFLT 112
              +       +   +  L  L +   +L        +I +    L  +    L +  + 
Sbjct: 236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295

Query: 113 RAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKF 172
           R    S        +L+L          P+L     SL+ L  + N+         L   
Sbjct: 296 RVKDFS--YNFGWQHLELVNCKFGQ--FPTL--KLKSLKRLTFTSNKGGNAFSEVDLPSL 349

Query: 173 SLLD 176
             LD
Sbjct: 350 EFLD 353

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 98.1 bits (245), Expect = 2e-24
 Identities = 42/168 (25%), Positives = 63/168 (37%), Gaps = 2/168 (1%)

Query: 2   SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLD 61
           +++  +  T+N L      NF    S L SL +  N      P        L+ ++L  +
Sbjct: 25  TNITVLNLTHNQLRRLPAANF-TRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83

Query: 62  DFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFN 121
           + S    K     T L  L+L  N +Q            L  L L +N L+     +   
Sbjct: 84  ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ 143

Query: 122 LSSLSNLDLSVNNLTGGIIPSL-LGNQSSLQTLYLSYNQLSGPIPSFI 168
           L +L  L LS N +       L +   SSL+ L LS NQ+    P   
Sbjct: 144 LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF 191

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 96.6 bits (241), Expect = 6e-24
 Identities = 39/184 (21%), Positives = 66/184 (35%), Gaps = 11/184 (5%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +  L  +    N +  EL       L N+  ++L  N +     ++ +    L+ + L  
Sbjct: 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR 463

Query: 61  DDFSG--TIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTR----- 113
                  + P     +  L  L L  N +     + L  L +LE+L LQ+N L R     
Sbjct: 464 VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHA 523

Query: 114 ---AIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILC 170
                   +  LS L  L+L  N     I   +  +   L+ + L  N L+    S    
Sbjct: 524 NPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN 582

Query: 171 KFSL 174
           + SL
Sbjct: 583 QVSL 586

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 94.7 bits (236), Expect = 3e-23
 Identities = 42/185 (22%), Positives = 71/185 (38%), Gaps = 12/185 (6%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHG--KIPSTLSNCKRLRNISL 58
           + ++  I  + N     L  N    + +L+ L L+          PS     + L  + L
Sbjct: 429 LENIFEIYLSYNKYLQ-LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL 487

Query: 59  SLDDFSGTIPKEIGNVTKLIRLYLRGNQLQ--------GEIPEELGNLAELEMLWLQNNF 110
           S ++ +      +  + KL  L L+ N L         G     L  L+ L +L L++N 
Sbjct: 488 SNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG 547

Query: 111 LTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILC 170
                     +L  L  +DL +NNL   +  S+  NQ SL++L L  N ++         
Sbjct: 548 FDEIPVEVFKDLFELKIIDLGLNNLNT-LPASVFNNQVSLKSLNLQKNLITSVEKKVFGP 606

Query: 171 KFSLL 175
            F  L
Sbjct: 607 AFRNL 611

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 94.3 bits (235), Expect = 4e-23
 Identities = 29/141 (20%), Positives = 53/141 (37%), Gaps = 1/141 (0%)

Query: 26  LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGN 85
            +N+  L L +N       +  +   +L ++ +  +  S   P+    +  L  L L+ N
Sbjct: 24  PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83

Query: 86  QLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLG 145
           +L     +       L  L L +N + +   +      +L  LDLS N L+         
Sbjct: 84  ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS-STKLGTQV 142

Query: 146 NQSSLQTLYLSYNQLSGPIPS 166
              +LQ L LS N++      
Sbjct: 143 QLENLQELLLSNNKIQALKSE 163

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 93.5 bits (233), Expect = 8e-23
 Identities = 39/174 (22%), Positives = 71/174 (40%), Gaps = 7/174 (4%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
            ++L  +   +N++   +  N      NL +L L +N        T    + L+ + LS 
Sbjct: 96  CTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSN 154

Query: 61  DDFSGTIPKEIGNV--TKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSS 118
           +       +E+     + L +L L  NQ++   P     +  L  L+L N  L  ++   
Sbjct: 155 NKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEK 214

Query: 119 IF---NLSSLSNLDLSVNNLTGGIIPSLLG-NQSSLQTLYLSYNQLSGPIPSFI 168
           +      +S+ NL LS + L+     + LG   ++L  L LSYN L+       
Sbjct: 215 LCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF 268

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 91.6 bits (228), Expect = 4e-22
 Identities = 38/175 (21%), Positives = 58/175 (33%), Gaps = 9/175 (5%)

Query: 1   MSSLLSIRFTNNTLFG-ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLS 59
           + SL  +      L   +  P+    L NL  L L NN         L   ++L  + L 
Sbjct: 453 VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQ 512

Query: 60  --------LDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFL 111
                        G     +  ++ L  L L  N       E   +L EL+++ L  N L
Sbjct: 513 HNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL 572

Query: 112 TRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPS 166
                S   N  SL +L+L  N +T            +L  L + +N       S
Sbjct: 573 NTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 87.7 bits (218), Expect = 7e-21
 Identities = 41/187 (21%), Positives = 64/187 (34%), Gaps = 15/187 (8%)

Query: 2   SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLS---NCKRLRNISL 58
           SSL  +  ++N +     P   + +  L  LFL N      +   L        +RN+SL
Sbjct: 171 SSLKKLELSSNQIKE-FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSL 229

Query: 59  SLDDFSGTIPKEIGN--VTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIP 116
           S    S T          T L  L L  N L     +    L +LE  +L+ N +     
Sbjct: 230 SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS 289

Query: 117 SSIFNLSSLSNLDLSVNNLTG--------GIIPSLLGNQSSLQTLYLSYNQLSGPIPSFI 168
            S+  L ++  L+L  +             I          L+ L +  N + G I S +
Sbjct: 290 HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNM 348

Query: 169 LCKFSLL 175
                 L
Sbjct: 349 FTGLINL 355

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 86.6 bits (215), Expect = 2e-20
 Identities = 35/193 (18%), Positives = 67/193 (34%), Gaps = 14/193 (7%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCN--HLSNLESLFLKNNMFHGKIPSTLSNCK--RLRNI 56
           +  L  +   N  L   L    C     +++ +L L N+       +T    K   L  +
Sbjct: 194 IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTML 253

Query: 57  SLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNF------ 110
            LS ++ +         + +L   +L  N +Q      L  L  +  L L+ +F      
Sbjct: 254 DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS 313

Query: 111 ---LTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSF 167
              L +    S   L  L +L++  N++ G I  ++     +L+ L LS +  S    + 
Sbjct: 314 LASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFTSLRTLTN 372

Query: 168 ILCKFSLLDNIRF 180
                     +  
Sbjct: 373 ETFVSLAHSPLHI 385

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 77.7 bits (192), Expect = 2e-17
 Identities = 35/205 (17%), Positives = 62/205 (30%), Gaps = 38/205 (18%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLR------ 54
            ++L  +  + N L   +  +    L  LE  FL+ N        +L     +R      
Sbjct: 247 WTNLTMLDLSYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305

Query: 55  ---NISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNF- 110
                S+SL             +  L  L +  N + G        L  L+ L L N+F 
Sbjct: 306 SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365

Query: 111 ---------------------------LTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSL 143
                                      +++    +   L  L  LDL +N +   +    
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425

Query: 144 LGNQSSLQTLYLSYNQLSGPIPSFI 168
                ++  +YLSYN+      +  
Sbjct: 426 WRGLENIFEIYLSYNKYLQLTRNSF 450

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.9 bits (138), Expect = 4e-10
 Identities = 27/148 (18%), Positives = 52/148 (35%), Gaps = 8/148 (5%)

Query: 1   MSSLLSIRFTNNTL-------FGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRL 53
           +  L  +   +N L           P  F   LS+L  L L++N F         +   L
Sbjct: 503 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL 562

Query: 54  RNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELG-NLAELEMLWLQNNFLT 112
           + I L L++ +        N   L  L L+ N +     +  G     L  L ++ N   
Sbjct: 563 KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622

Query: 113 RAIPSSIFNLSSLSNLDLSVNNLTGGII 140
               S  + ++ ++    ++  L+   +
Sbjct: 623 CTCESIAWFVNWINETHTNIPELSSHYL 650

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 97.4 bits (243), Expect = 4e-24
 Identities = 29/177 (16%), Positives = 63/177 (35%), Gaps = 11/177 (6%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFH--------GKIPSTLSNCKR 52
           +  L  +   N     +LP      L  ++ + +  N            +  +     ++
Sbjct: 248 LKDLTDVEVYNCPNLTKLPTFLKA-LPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306

Query: 53  LRNISLSLDDF-SGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFL 111
           ++ I +  ++  +  +   +  + KL  L    NQL+G++P   G+  +L  L L  N +
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQI 365

Query: 112 TRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFI 168
           T    +       + NL  + N L          + S +  +  SYN++        
Sbjct: 366 TEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF 422

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 90.9 bits (226), Expect = 7e-22
 Identities = 38/184 (20%), Positives = 59/184 (32%), Gaps = 19/184 (10%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLS--NCKRLRNISL 58
              L S+    N    E+P NFC     +E+L   +N     IP+     +   +  I  
Sbjct: 352 EIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDF 409

Query: 59  S-------LDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFL 111
           S              +         +  + L  NQ+     E     + L  + L  N L
Sbjct: 410 SYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNML 469

Query: 112 T-------RAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPI 164
           T       +    +  N   L+++DL  N LT             L  + LSYN  S   
Sbjct: 470 TEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-F 528

Query: 165 PSFI 168
           P+  
Sbjct: 529 PTQP 532

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 90.5 bits (225), Expect = 9e-22
 Identities = 24/196 (12%), Positives = 60/196 (30%), Gaps = 29/196 (14%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCN-HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLS 59
             S    +                   S+L    + ++     I  +     +   I   
Sbjct: 132 NMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQL 191

Query: 60  LDDFSGTIPKEIGNVTKLIRLYLRGNQLQGE-------------------IPEELGNLAE 100
            ++ +  + K +  +TKL + Y+  +    E                      +  NL +
Sbjct: 192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKD 250

Query: 101 LEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG-------GIIPSLLGNQSSLQTL 153
           L  + + N      +P+ +  L  +  ++++ N               +       +Q +
Sbjct: 251 LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII 310

Query: 154 YLSYNQL-SGPIPSFI 168
           Y+ YN L + P+ + +
Sbjct: 311 YIGYNNLKTFPVETSL 326

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 88.6 bits (220), Expect = 4e-21
 Identities = 22/192 (11%), Positives = 51/192 (26%), Gaps = 26/192 (13%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHG----KIPSTLSNCKRLRNI 56
              +  +        G +P      L+ LE L L ++          P  +S        
Sbjct: 80  NGRVTGLSLEGFGASGRVPDAIGQ-LTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 57  SLSLDDFSGTIPKEIG--NVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRA 114
                 +  T        + + LI+  +  +  Q  I +      +   +   +N +T  
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT-F 197

Query: 115 IPSSIFNLSSLSNLDLSVNNLTG------------------GIIPSLLGNQSSLQTLYLS 156
           +  ++  L+ L    +  +                              N   L  + + 
Sbjct: 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVY 257

Query: 157 YNQLSGPIPSFI 168
                  +P+F+
Sbjct: 258 NCPNLTKLPTFL 269

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 88.6 bits (220), Expect = 4e-21
 Identities = 21/170 (12%), Positives = 48/170 (28%), Gaps = 8/170 (4%)

Query: 14  LFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSG----TIPK 69
           ++G  P    N    +  L L+     G++P  +     L  ++L             PK
Sbjct: 68  MWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPK 127

Query: 70  EIGNVTKLIRLYLRGNQLQGEIPEELGNLA--ELEMLWLQNNFLTRAIPSSIFNLSSLSN 127
            I       +        Q    +        +L    + ++   ++I  S       + 
Sbjct: 128 GISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQ 187

Query: 128 LDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKFSLLDN 177
           +    NN+T   +   +   + L+  Y+  +              +    
Sbjct: 188 IGQLSNNITF--VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA 235

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 88.2 bits (219), Expect = 6e-21
 Identities = 37/188 (19%), Positives = 60/188 (31%), Gaps = 24/188 (12%)

Query: 1   MSSLLSIRFTNNTL-------FGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRL 53
           +S + +I F+ N +       F  L P       N+ S+ L NN          S    L
Sbjct: 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK-GINVSSINLSNNQISKFPKELFSTGSPL 459

Query: 54  RNISLS-------LDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPE-ELGNLAELEMLW 105
            +I+L          +      +   N   L  + LR N+L     +     L  L  + 
Sbjct: 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGID 519

Query: 106 LQNNFLTRAIPSSIFNLSSL------SNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQ 159
           L  N  ++  P+   N S+L      +  D   N       P  +    SL  L +  N 
Sbjct: 520 LSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLR-EWPEGITLCPSLTQLQIGSND 577

Query: 160 LSGPIPSF 167
           +       
Sbjct: 578 IRKVNEKI 585

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 86.2 bits (214), Expect = 3e-20
 Identities = 30/188 (15%), Positives = 68/188 (36%), Gaps = 12/188 (6%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
              +  I    N L           +  L  L    N   GK+P+   +  +L +++L+ 
Sbjct: 304 GEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAY 362

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPE--ELGNLAELEMLWLQNNFLT------ 112
           +  +       G   ++  L    N+L+  IP   +  +++ +  +    N +       
Sbjct: 363 NQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421

Query: 113 -RAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCK 171
              +  + F   ++S+++LS N ++      L    S L ++ L  N L+    + +  +
Sbjct: 422 FDPLDPTPFKGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDE 480

Query: 172 FSLLDNIR 179
                N  
Sbjct: 481 NENFKNTY 488

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 74.3 bits (183), Expect = 3e-16
 Identities = 34/155 (21%), Positives = 54/155 (34%), Gaps = 13/155 (8%)

Query: 14  LFGELPPNFCNHLSNLESLFLKNNMFHGKIPS-TLSNCKRLRNISLSLDDFSGTIPKEIG 72
              +   NF N    L S+ L+ N           +    L  I LS + FS   P +  
Sbjct: 476 SLKDENENFKN-TYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPL 533

Query: 73  NVTKLIRLYLR------GNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLS 126
           N + L    +R      GN+   E PE +     L  L + +N +   +   I    ++S
Sbjct: 534 NSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKI--TPNIS 590

Query: 127 NLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
            LD+  N     I  S +          L Y++  
Sbjct: 591 VLDIKDNPNI-SIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 69.7 bits (171), Expect = 2e-14
 Identities = 21/126 (16%), Positives = 39/126 (30%), Gaps = 5/126 (3%)

Query: 55  NISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLT-- 112
           N +  LD +       + +  ++  L L G    G +P+ +G L ELE+L L ++     
Sbjct: 61  NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN 120

Query: 113 --RAIPSSIFNLSSLSNLDLSVNNLTGGIIPSL-LGNQSSLQTLYLSYNQLSGPIPSFIL 169
                P  I    S         +     +      + S L    ++ +     I     
Sbjct: 121 ERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR 180

Query: 170 CKFSLL 175
                 
Sbjct: 181 ITLKDT 186

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 88.4 bits (219), Expect = 6e-21
 Identities = 31/190 (16%), Positives = 58/190 (30%), Gaps = 16/190 (8%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHG---------KIPSTLSNCK 51
           +  L  +   N     +LP    + L  L+SL +  N             ++        
Sbjct: 490 LKDLTDVELYNCPNMTQLPDFLYD-LPELQSLNIACNRGISAAQLKADWTRLADDEDTGP 548

Query: 52  RLRNISLSLDDFSG-TIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNF 110
           +++   +  ++         +  + KL  L    N++     E  G   +L  L L  N 
Sbjct: 549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQ 606

Query: 111 LTRAIPSSIF-NLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFIL 169
           +   IP         +  L  S N L          +   + ++  SYN++       I 
Sbjct: 607 IE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGS-EGRNIS 664

Query: 170 CKFSLLDNIR 179
           C       I 
Sbjct: 665 CSMDDYKGIN 674

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 88.0 bits (218), Expect = 7e-21
 Identities = 30/183 (16%), Positives = 55/183 (30%), Gaps = 15/183 (8%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +S LL      N     +  +    L + +   L N +    I   +    +L+ I  + 
Sbjct: 400 LSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRI--TFISKAIQRLTKLQIIYFAN 457

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
             F+                     +          NL +L  + L N      +P  ++
Sbjct: 458 SPFTYDNIAVD-----WEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512

Query: 121 NLSSLSNLDLSVNNLTGGI--------IPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKF 172
           +L  L +L+++ N              +         +Q  Y+ YN L     S  L K 
Sbjct: 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKM 572

Query: 173 SLL 175
             L
Sbjct: 573 VKL 575

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 84.5 bits (209), Expect = 1e-19
 Identities = 33/182 (18%), Positives = 60/182 (32%), Gaps = 17/182 (9%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPST--LSNCKRLRNISL 58
              L  ++   N    E+P +FC     +E L   +N     IP+     +   + ++  
Sbjct: 594 NVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDF 651

Query: 59  SLDDFSGTIPK-----EIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLT- 112
           S +             +         + L  N++Q    E     + +  + L NN +T 
Sbjct: 652 SYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTS 711

Query: 113 ------RAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPS 166
                 +    +  N   L+ +DL  N LT             L  + +SYN  S   P+
Sbjct: 712 IPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPT 770

Query: 167 FI 168
             
Sbjct: 771 QP 772

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 81.1 bits (200), Expect = 2e-18
 Identities = 29/184 (15%), Positives = 61/184 (33%), Gaps = 23/184 (12%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMF-------HGKIPSTLSNCKRL 53
             +  ++  + N +    P       S + ++ L NN+                 N   L
Sbjct: 672 GINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL 730

Query: 54  RNISLSLDDFSGTIPKEI--GNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQ---- 107
             I L  +  + ++  +     +  L  + +  N      P +  N ++L+   ++    
Sbjct: 731 TTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRD 788

Query: 108 --NNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQL-SGPI 164
              N + R  P+ I    SL  L +  N++   +   L      L  L ++ N   S  +
Sbjct: 789 AEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLT---PQLYILDIADNPNISIDV 844

Query: 165 PSFI 168
            S  
Sbjct: 845 TSVC 848

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 70.7 bits (173), Expect = 7e-15
 Identities = 20/170 (11%), Positives = 52/170 (30%), Gaps = 8/170 (4%)

Query: 14  LFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGN 73
           ++G+ P    ++   +  L L      G++P  +     L+ +S      + +       
Sbjct: 310 MWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDE 369

Query: 74  VTKLIRLYLRGNQLQGEIPEE-LGNLAELEMLWLQNNFLTR-----AIPSSIFNLSSLSN 127
                    R ++++    +  L     L +  L  + + R      I          + 
Sbjct: 370 ELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQ 429

Query: 128 LDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKFSLLDN 177
           +    N +T   I   +   + LQ +Y + +  +    +      +    
Sbjct: 430 IGNLTNRITF--ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYA 477

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 70.3 bits (172), Expect = 1e-14
 Identities = 27/155 (17%), Positives = 57/155 (36%), Gaps = 13/155 (8%)

Query: 14  LFGELPPNFCNHLSNLESLFLKNNMFHGKIPS-TLSNCKRLRNISLSLDDFSGTIPKEIG 72
                  N+ N    L ++ L+ N           +    L N+ +S + FS + P +  
Sbjct: 716 SLKPKDGNYKN-TYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPL 773

Query: 73  NVTKLIRLYLR------GNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLS 126
           N ++L    +R      GN++  + P  +     L  L + +N + + +   +     L 
Sbjct: 774 NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL--TPQLY 830

Query: 127 NLDLSVNNLTGGIIPSLLGN-QSSLQTLYLSYNQL 160
            LD++ N      + S+    ++ +  L     Q 
Sbjct: 831 ILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 69.1 bits (169), Expect = 2e-14
 Identities = 22/193 (11%), Positives = 50/193 (25%), Gaps = 28/193 (14%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIP-------STLSNCKRL 53
              +  +        G +P      L+ L+ L    +              +   + +R 
Sbjct: 322 NGRVTGLSLAGFGAKGRVPDAIGQ-LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERK 380

Query: 54  RNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTR 113
             I +          + +     L     R  +++    +   +L + ++  L N     
Sbjct: 381 HRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRI--T 438

Query: 114 AIPSSIFNLSSLSNLDLSVNNLTG------------------GIIPSLLGNQSSLQTLYL 155
            I  +I  L+ L  +  + +  T                           N   L  + L
Sbjct: 439 FISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVEL 498

Query: 156 SYNQLSGPIPSFI 168
                   +P F+
Sbjct: 499 YNCPNMTQLPDFL 511

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 65.3 bits (159), Expect = 4e-13
 Identities = 20/127 (15%), Positives = 41/127 (32%), Gaps = 5/127 (3%)

Query: 55  NISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRA 114
           N +  LD +      ++ N  ++  L L G   +G +P+ +G L EL++L    +  T +
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362

Query: 115 IPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS-----GPIPSFIL 169
                    +    +   + +        L     L    L  + ++      PI     
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSR 422

Query: 170 CKFSLLD 176
                  
Sbjct: 423 ISLKDTQ 429

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 86.6 bits (215), Expect = 2e-20
 Identities = 35/162 (21%), Positives = 55/162 (33%), Gaps = 2/162 (1%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +  L  + F ++TL      +    L  L  L +                  L  + ++ 
Sbjct: 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG 457

Query: 61  DDFSGTIPKEI-GNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSI 119
           + F       +  N T L  L L   QL+         L  L++L + +N L     S  
Sbjct: 458 NSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHY 517

Query: 120 FNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
             L SLS LD S N +       L     SL    L+ N ++
Sbjct: 518 NQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 85.1 bits (211), Expect = 6e-20
 Identities = 34/182 (18%), Positives = 60/182 (32%), Gaps = 9/182 (4%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIP-STLSNCKRLRNISLS 59
            +SL  +  + N     +       L  L+ L  +++        S   + ++L  + +S
Sbjct: 375 TNSLRHLDLSFNGA--IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS 432

Query: 60  LDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEE-LGNLAELEMLWLQNNFLTRAIPSS 118
             +           +T L  L + GN  +         N   L  L L    L +     
Sbjct: 433 YTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV 492

Query: 119 IFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKFSLLDNI 178
              L  L  L++S NNL   +  S      SL TL  S+N++                ++
Sbjct: 493 FDTLHRLQLLNMSHNNLLF-LDSSHYNQLYSLSTLDCSFNRIETSKGIL----QHFPKSL 547

Query: 179 RF 180
            F
Sbjct: 548 AF 549

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 82.8 bits (205), Expect = 4e-19
 Identities = 33/140 (23%), Positives = 55/140 (39%)

Query: 27  SNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQ 86
           S+ +++ L  N        + SN   L+ + LS  +      K    +  L  L L GN 
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 87  LQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGN 146
           +Q   P     L  LE L      L       I  L +L  L+++ N +    +P+   N
Sbjct: 92  IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151

Query: 147 QSSLQTLYLSYNQLSGPIPS 166
            ++L  + LSYN +     +
Sbjct: 152 LTNLVHVDLSYNYIQTITVN 171

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 79.7 bits (197), Expect = 5e-18
 Identities = 30/168 (17%), Positives = 56/168 (33%), Gaps = 5/168 (2%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +  L S+  T N     +       L +L  L L  N        + S+        L L
Sbjct: 327 LPFLKSLTLTMNKG--SISFKKVA-LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 383

Query: 61  DD-FSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEE-LGNLAELEMLWLQNNFLTRAIPSS 118
               +  +      + +L  L  + + L+         +L +L  L +            
Sbjct: 384 SFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI 443

Query: 119 IFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPS 166
              L+SL+ L ++ N+     + ++  N ++L  L LS  QL      
Sbjct: 444 FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG 491

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 74.3 bits (183), Expect = 4e-16
 Identities = 34/187 (18%), Positives = 65/187 (34%), Gaps = 9/187 (4%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +  L ++  T N +     P   + L++LE+L              +     L+ ++++ 
Sbjct: 79  LHHLSNLILTGNPI-QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAH 137

Query: 61  DDFSG-TIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEM----LWLQNNFLTRAI 115
           +      +P    N+T L+ + L  N +Q     +L  L E       L +  N +   I
Sbjct: 138 NFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-I 196

Query: 116 PSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSG--PIPSFILCKFS 173
               F    L  L L  N  +  I+ + L N + L    L   +      +  F      
Sbjct: 197 QDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIME 256

Query: 174 LLDNIRF 180
            L ++  
Sbjct: 257 GLCDVTI 263

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.9 bits (130), Expect = 4e-09
 Identities = 33/197 (16%), Positives = 55/197 (27%), Gaps = 27/197 (13%)

Query: 2   SSLLSIRFTNNTLFGELPPNFCNHLSNL--ESLFLKNNMFHGKIPSTLSNCKRLRNISLS 59
             L+   F +        P+    L ++  +   L                  +  +SL+
Sbjct: 234 HRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLA 293

Query: 60  LDDFSGTIPKEIGNVTKLIRLYLRGNQL-------------------QGEIPEELGNLAE 100
                    +++    K   L +   QL                   +G I  +   L  
Sbjct: 294 GVSI--KYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPS 351

Query: 101 LEMLWLQNNFLTR--AIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYN 158
           L  L L  N L+       S    +SL +LDLS N     I+ +       LQ L   ++
Sbjct: 352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI--IMSANFMGLEELQHLDFQHS 409

Query: 159 QLSGPIPSFILCKFSLL 175
            L              L
Sbjct: 410 TLKRVTEFSAFLSLEKL 426

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 35/198 (17%), Positives = 62/198 (31%), Gaps = 39/198 (19%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           + +L  +   +N +     P + ++L+NL  + L  N       + L   +    ++LSL
Sbjct: 127 LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL 186

Query: 61  DDFS---GTIPKEIGNVTKLIRLYLRGNQLQGEIPEE-LGNLAELEMLWLQ--------- 107
           D        I  +     KL  L LRGN     I +  L NLA L +  L          
Sbjct: 187 DMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN 246

Query: 108 -----------------------NNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLL 144
                                                L+++S + L+  ++        +
Sbjct: 247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY---LEDV 303

Query: 145 GNQSSLQTLYLSYNQLSG 162
                 Q+L +   QL  
Sbjct: 304 PKHFKWQSLSIIRCQLKQ 321

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 83.9 bits (208), Expect = 1e-19
 Identities = 41/171 (23%), Positives = 62/171 (36%), Gaps = 5/171 (2%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
            S L  +  T   L  ELP      LS L+ L L  N F      + SN   L ++S+  
Sbjct: 277 FSGLQELDLTATHL-SELPSGLVG-LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334

Query: 61  DDFSGTIPKE-IGNVTKLIRLYLRGNQLQ--GEIPEELGNLAELEMLWLQNNFLTRAIPS 117
           +     +    + N+  L  L L  + ++       +L NL+ L+ L L  N        
Sbjct: 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE 394

Query: 118 SIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFI 168
           +      L  LDL+   L      S   N   L+ L LS++ L        
Sbjct: 395 AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF 445

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 83.5 bits (207), Expect = 2e-19
 Identities = 44/170 (25%), Positives = 67/170 (39%), Gaps = 6/170 (3%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPS-TLSNCKRLRNISLS 59
           +S+L  +  + N  F  L     ++  +L  L +K N    ++ +  L N + LR + LS
Sbjct: 300 LSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLS 358

Query: 60  LDD--FSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPS 117
            DD   S     ++ N++ L  L L  N+      E      +LE+L L    L      
Sbjct: 359 HDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ 418

Query: 118 SIF-NLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPS 166
           S F NL  L  L+LS + L       L     +LQ L L  N        
Sbjct: 419 SPFQNLHLLKVLNLSHSLLDI-SSEQLFDGLPALQHLNLQGNHFPKGNIQ 467

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 82.4 bits (204), Expect = 6e-19
 Identities = 32/166 (19%), Positives = 59/166 (35%), Gaps = 1/166 (0%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           + +L  +  T   +   +  +       L++L L  N       + LS  K L+++    
Sbjct: 56  LINLTFLDLTRCQI-YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQ 114

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
              S      + N   L  LYL  N +      +     +L++L  QNN +       + 
Sbjct: 115 TGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMS 174

Query: 121 NLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPS 166
           +L   +NL L++N      I     + +  Q+L     Q    I  
Sbjct: 175 SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFK 220

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 80.8 bits (200), Expect = 2e-18
 Identities = 31/165 (18%), Positives = 64/165 (38%), Gaps = 5/165 (3%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLS- 59
              L  +      L  +   +   +L  L+ L L +++              L++++L  
Sbjct: 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG 458

Query: 60  --LDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPS 117
                 +      +  + +L  L L    L         +L  +  + L +N LT +   
Sbjct: 459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE 518

Query: 118 SIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSG 162
           ++ +L  +  L+L+ N+++  I+PSLL   S  +T+ L  N L  
Sbjct: 519 ALSHLKGIY-LNLASNHIS-IILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 80.8 bits (200), Expect = 2e-18
 Identities = 24/141 (17%), Positives = 44/141 (31%), Gaps = 1/141 (0%)

Query: 26  LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGN 85
            ++ E L    N+      +T S    L  + L+             +  +L  L L  N
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 86  QLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLG 145
            L       L     L+ L+     ++      + N  +L +L L  N+++  I      
Sbjct: 92  PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS-SIKLPKGF 150

Query: 146 NQSSLQTLYLSYNQLSGPIPS 166
               L+ L    N +      
Sbjct: 151 PTEKLKVLDFQNNAIHYLSKE 171

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 80.1 bits (198), Expect = 4e-18
 Identities = 33/176 (18%), Positives = 56/176 (31%), Gaps = 5/176 (2%)

Query: 2   SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLD 61
           +S   + F+ N L       F   L NL  L L     +     T  +  RL  + L+ +
Sbjct: 33  NSTECLEFSFNVLPTIQNTTFSR-LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 62  DFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFN 121
                    +     L  L+     +       L N   LE L+L +N ++       F 
Sbjct: 92  PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP 151

Query: 122 LSSLSNLDLSVNNLTGGIIPSLLGNQSSLQ--TLYLSYNQLSGPIPSFILCKFSLL 175
              L  LD   N +   +    + +       +L L+ N ++G I           
Sbjct: 152 TEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQ 205

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 79.3 bits (196), Expect = 6e-18
 Identities = 41/178 (23%), Positives = 65/178 (36%), Gaps = 7/178 (3%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIP-STLSNCKRLRNISLS 59
           +S L S+  + N     L          LE L L       K   S   N   L+ ++LS
Sbjct: 375 LSHLQSLNLSYNEP-LSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS 433

Query: 60  LDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEI---PEELGNLAELEMLWLQNNFLTRAIP 116
                 +  +    +  L  L L+GN            L  L  LE+L L    L+    
Sbjct: 434 HSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493

Query: 117 SSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKFSL 174
            +  +L  ++++DLS N LT       L +   +  L L+ N +S  +PS +      
Sbjct: 494 HAFTSLKMMNHVDLSHNRLTS-SSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQ 549

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 75.1 bits (185), Expect = 2e-16
 Identities = 33/161 (20%), Positives = 58/161 (36%), Gaps = 5/161 (3%)

Query: 11  NNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKE 70
           ++    +       +LS+L+SL L  N            C +L  + L+         + 
Sbjct: 360 DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419

Query: 71  I-GNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAI---PSSIFNLSSLS 126
              N+  L  L L  + L     +    L  L+ L LQ N   +      +S+  L  L 
Sbjct: 420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLE 479

Query: 127 NLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSF 167
            L LS  +L+  I      +   +  + LS+N+L+      
Sbjct: 480 ILVLSFCDLSS-IDQHAFTSLKMMNHVDLSHNRLTSSSIEA 519

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 68.9 bits (169), Expect = 2e-14
 Identities = 38/197 (19%), Positives = 67/197 (34%), Gaps = 32/197 (16%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
             +L S+   +N +   +          L+ L  +NN  H      +S+ ++  N+SL+L
Sbjct: 128 QKTLESLYLGSNHI-SSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL 186

Query: 61  DD-FSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLA-------------------- 99
           +      I     +      L   G Q    I + L N                      
Sbjct: 187 NGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPA 246

Query: 100 --------ELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQ 151
                    +E + LQ ++      ++    S L  LDL+  +L+   +PS L   S+L+
Sbjct: 247 VFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE--LPSGLVGLSTLK 304

Query: 152 TLYLSYNQLSGPIPSFI 168
            L LS N+         
Sbjct: 305 KLVLSANKFENLCQISA 321

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 79.2 bits (196), Expect = 4e-18
 Identities = 37/168 (22%), Positives = 68/168 (40%), Gaps = 11/168 (6%)

Query: 2   SSLLSIRFTNNTLFGELPPNFCN--------HLSNLESLFLKNNMFHGKIPSTLSNCKRL 53
           + L  +         ELP    +         L NL+SL L+       +P++++N + L
Sbjct: 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNL 208

Query: 54  RNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTR 113
           +++ +     S  +   I ++ KL  L LRG       P   G  A L+ L L++     
Sbjct: 209 KSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267

Query: 114 AIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
            +P  I  L+ L  LDL    +    +PSL+    +   + +  +  +
Sbjct: 268 TLPLDIHRLTQLEKLDLR-GCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 76.5 bits (189), Expect = 4e-17
 Identities = 33/161 (20%), Positives = 67/161 (41%), Gaps = 15/161 (9%)

Query: 17  ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTK 76
           + P      LS+L+ + +       ++P T+     L  ++L+ +     +P  I ++ +
Sbjct: 95  QFPDQAFR-LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNR 151

Query: 77  LIRLYLRGNQLQGEIPEELGN---------LAELEMLWLQNNFLTRAIPSSIFNLSSLSN 127
           L  L +R      E+PE L +         L  L+ L L+   +  ++P+SI NL +L +
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKS 210

Query: 128 LDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFI 168
           L +  + L+   +   + +   L+ L L         P   
Sbjct: 211 LKIRNSPLSA--LGPAIHHLPKLEELDLRGCTALRNYPPIF 249

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 76.1 bits (188), Expect = 4e-17
 Identities = 35/161 (21%), Positives = 61/161 (37%), Gaps = 13/161 (8%)

Query: 17  ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNI----SLSLDDFSGT----IP 68
            LP +  + L+ L  L ++      ++P  L++           +L       T    +P
Sbjct: 141 ALPASIAS-LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP 199

Query: 69  KEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNL 128
             I N+  L  L +R + L   +   + +L +LE L L+     R  P      + L  L
Sbjct: 200 ASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRL 258

Query: 129 DLS-VNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFI 168
            L   +NL    +P  +   + L+ L L        +PS I
Sbjct: 259 ILKDCSNLL--TLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 72.3 bits (178), Expect = 1e-15
 Identities = 29/134 (21%), Positives = 51/134 (38%), Gaps = 3/134 (2%)

Query: 11  NNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKE 70
             T    LP +  N L NL+SL ++N+     +   + +  +L  + L         P  
Sbjct: 191 EWTGIRSLPASIAN-LQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPI 248

Query: 71  IGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDL 130
            G    L RL L+       +P ++  L +LE L L+       +PS I  L +   + +
Sbjct: 249 FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV 308

Query: 131 SVNNLTGGIIPSLL 144
              +L   +     
Sbjct: 309 P-PHLQAQLDQHRP 321

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 69.2 bits (170), Expect = 1e-14
 Identities = 27/168 (16%), Positives = 57/168 (33%), Gaps = 25/168 (14%)

Query: 22  FCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPK------------ 69
             +H S  E+L+ + +         LS  +R  N   +    +                 
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGR 66

Query: 70  ---------EIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
                    E       + L LR   L  + P++   L+ L+ + +    L   +P ++ 
Sbjct: 67  ALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLME-LPDTMQ 124

Query: 121 NLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFI 168
             + L  L L+ N L    +P+ + + + L+ L +        +P  +
Sbjct: 125 QFAGLETLTLARNPLR--ALPASIASLNRLRELSIRACPELTELPEPL 170

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 58.4 bits (142), Expect = 7e-11
 Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 2/116 (1%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           + +L S++  N+ L   L P   + L  LE L L+        P        L+ + L  
Sbjct: 205 LQNLKSLKIRNSPLS-ALGPAIHH-LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD 262

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIP 116
                T+P +I  +T+L +L LRG      +P  +  L    ++ +  +   +   
Sbjct: 263 CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.0 bits (102), Expect = 1e-05
 Identities = 14/98 (14%), Positives = 28/98 (28%), Gaps = 1/98 (1%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +  L  +     T     PP F    + L+ L LK+      +P  +    +L  + L  
Sbjct: 228 LPKLEELDLRGCTALRNYPPIFGG-RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNL 98
                 +P  I  +     + +  +             
Sbjct: 287 CVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 74.8 bits (184), Expect = 2e-16
 Identities = 40/162 (24%), Positives = 66/162 (40%), Gaps = 5/162 (3%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           ++SL ++   +N L   +P     +LS L  L+L+NN          +    L  + L  
Sbjct: 122 LASLNTLELFDNWL-TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE 180

Query: 61  DDFSGTIPKEI-GNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSI 119
                 I +     +  L  L L    ++ ++P  L  L  LE L +  N      P S 
Sbjct: 181 LKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFPEIRPGSF 238

Query: 120 FNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
             LSSL  L +  + ++  I  +     +SL  L L++N LS
Sbjct: 239 HGLSSLKKLWVMNSQVSL-IERNAFDGLASLVELNLAHNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 67.5 bits (165), Expect = 7e-14
 Identities = 36/143 (25%), Positives = 50/143 (34%), Gaps = 5/143 (3%)

Query: 27  SNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQ 86
           SN   L L  N        T  +   L  + L  +            +  L  L L  N 
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134

Query: 87  LQGEIPEE-LGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNNLTGGIIPSLL 144
           L   IP      L++L  LWL+NN +   IPS  F  + SL  LDL        I     
Sbjct: 135 LT-VIPSGAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLMRLDLGELKKLEYISEGAF 192

Query: 145 GNQSSLQTLYLSYNQLSGPIPSF 167
               +L+ L L    +   +P+ 
Sbjct: 193 EGLFNLKYLNLGMCNIKD-MPNL 214

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 66.3 bits (162), Expect = 2e-13
 Identities = 37/163 (22%), Positives = 68/163 (41%), Gaps = 7/163 (4%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +  L  ++   N++  ++     N L++L +L L +N              +LR + L  
Sbjct: 98  LHHLEVLQLGRNSI-RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRN 156

Query: 61  DDFSGTIPKEI-GNVTKLIRLYL-RGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSS 118
           +    +IP      V  L+RL L    +L+         L  L+ L L    +   +P+ 
Sbjct: 157 NPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPN- 213

Query: 119 IFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
           +  L  L  L++S N+    I P      SSL+ L++  +Q+S
Sbjct: 214 LTPLVGLEELEMSGNHFPE-IRPGSFHGLSSLKKLWVMNSQVS 255

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 73.5 bits (181), Expect = 3e-16
 Identities = 35/154 (22%), Positives = 64/154 (41%), Gaps = 6/154 (3%)

Query: 11  NNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKE 70
           +      +P        NL  L+L +N+      +  +    L  + LS +    ++   
Sbjct: 40  HGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPA 99

Query: 71  I-GNVTKLIRLYLRGNQLQGEIPEE-LGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSN 127
               + +L  L+L    LQ E+       LA L+ L+LQ+N L   +P   F +L +L++
Sbjct: 100 TFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTH 157

Query: 128 LDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
           L L  N ++  +         SL  L L  N+++
Sbjct: 158 LFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVA 190

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 70.8 bits (174), Expect = 2e-15
 Identities = 43/165 (26%), Positives = 66/165 (40%), Gaps = 9/165 (5%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPS-TLSNCKRLRNISLS 59
             +L  +   +N L   +       L+ LE L L +N     +   T     RL  + L 
Sbjct: 55  CRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD 113

Query: 60  LDDFSGTIPKEI-GNVTKLIRLYLRGNQLQGEIPEE-LGNLAELEMLWLQNNFLTRAIPS 117
                  +   +   +  L  LYL+ N LQ  +P++   +L  L  L+L  N ++  +P 
Sbjct: 114 RCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISS-VPE 170

Query: 118 SIF-NLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
             F  L SL  L L  N +   + P    +   L TLYL  N LS
Sbjct: 171 RAFRGLHSLDRLLLHQNRVAH-VHPHAFRDLGRLMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 66.6 bits (163), Expect = 8e-14
 Identities = 35/162 (21%), Positives = 61/162 (37%), Gaps = 5/162 (3%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           ++ L  +  ++N     + P   + L  L +L L         P        L+ + L  
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138

Query: 61  DDFSGTIPKEI-GNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSI 119
           +     +P +   ++  L  L+L GN++          L  L+ L L  N +   +    
Sbjct: 139 NALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHA 196

Query: 120 F-NLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQL 160
           F +L  L  L L  NNL+  +    L    +LQ L L+ N  
Sbjct: 197 FRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 59.2 bits (144), Expect = 3e-11
 Identities = 32/120 (26%), Positives = 44/120 (36%), Gaps = 4/120 (3%)

Query: 43  IPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELE 102
           +P  +      + I L  +  S            L  L+L  N L          LA LE
Sbjct: 26  VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 103 MLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
            L L +N   R++  + F  L  L  L L    L   + P L    ++LQ LYL  N L 
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE-LGPGLFRGLAALQYLYLQDNALQ 142

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 73.6 bits (181), Expect = 6e-16
 Identities = 36/162 (22%), Positives = 68/162 (41%), Gaps = 4/162 (2%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +S+L  +  + N +   L       L NL+SL + +N          S    L  ++L  
Sbjct: 103 LSNLTKLDISENKI-VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK 161

Query: 61  DDFSGTIPKEI-GNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSI 119
            + + +IP E   ++  LI L LR   +          L  L++L + +      +  + 
Sbjct: 162 CNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC 220

Query: 120 FNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
               +L++L ++  NLT  +    + +   L+ L LSYN +S
Sbjct: 221 LYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS 261

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 71.7 bits (176), Expect = 3e-15
 Identities = 35/161 (21%), Positives = 62/161 (38%), Gaps = 4/161 (2%)

Query: 2   SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLD 61
           +    +    N +   L  +      +LE L L  N+     P   +N   LR + L  +
Sbjct: 32  TETRLLDLGKNRI-KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90

Query: 62  DFSGTIPKEI-GNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
                IP  +   ++ L +L +  N++   +     +L  L+ L + +N L      +  
Sbjct: 91  RLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS 149

Query: 121 NLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
            L+SL  L L   NLT  I    L +   L  L L +  ++
Sbjct: 150 GLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNIN 189

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 67.4 bits (165), Expect = 8e-14
 Identities = 31/162 (19%), Positives = 64/162 (39%), Gaps = 4/162 (2%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +  L+ +R  +  +   +       L  L+ L + +  +   +         L ++S++ 
Sbjct: 175 LHGLIVLRLRHLNI-NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITH 233

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
            + +      + ++  L  L L  N +       L  L  L+ + L    L   +    F
Sbjct: 234 CNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAF 292

Query: 121 -NLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
             L+ L  L++S N LT  +  S+  +  +L+TL L  N L+
Sbjct: 293 RGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 73.2 bits (180), Expect = 6e-16
 Identities = 44/181 (24%), Positives = 75/181 (41%), Gaps = 6/181 (3%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +++L ++   +N L   +P     +LS L+ L+L+NN          +    LR + L  
Sbjct: 111 LANLNTLELFDNRL-TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE 169

Query: 61  DDFSGTIPKEI-GNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSI 119
                 I +     ++ L  L L    L+ EIP  L  L +L+ L L  N L+   P S 
Sbjct: 170 LKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSF 227

Query: 120 FNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKFSLLDNIR 179
             L  L  L +  + +   I  +   N  SL  + L++N L+  +P  +      L+ I 
Sbjct: 228 QGLMHLQKLWMIQSQIQV-IERNAFDNLQSLVEINLAHNNLTL-LPHDLFTPLHHLERIH 285

Query: 180 F 180
            
Sbjct: 286 L 286

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 67.9 bits (166), Expect = 6e-14
 Identities = 38/143 (26%), Positives = 57/143 (39%), Gaps = 5/143 (3%)

Query: 27  SNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQ 86
           +N   L L  N       ++  + + L  + LS +            +  L  L L  N+
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 87  LQGEIPEE-LGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNNLTGGIIPSLL 144
           L   IP      L++L+ LWL+NN +   IPS  F  + SL  LDL        I     
Sbjct: 124 LT-TIPNGAFVYLSKLKELWLRNNPIES-IPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181

Query: 145 GNQSSLQTLYLSYNQLSGPIPSF 167
              S+L+ L L+   L   IP+ 
Sbjct: 182 EGLSNLRYLNLAMCNLRE-IPNL 203

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 73.2 bits (180), Expect = 8e-16
 Identities = 37/180 (20%), Positives = 64/180 (35%), Gaps = 8/180 (4%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
              L  +  +   +   +       LS+L +L L  N          S    L+ +    
Sbjct: 51  FPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQ-GEIPEELGNLAELEMLWLQNNFLTRAIPSSI 119
            + +      IG++  L  L +  N +Q  ++PE   NL  LE L L +N +     + +
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169

Query: 120 FNLSSLSN----LDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKFSLL 175
             L  +      LDLS+N +    I      +  L  L L  N  S  +    +   + L
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNF--IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGL 227

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 73.2 bits (180), Expect = 9e-16
 Identities = 28/140 (20%), Positives = 55/140 (39%)

Query: 27  SNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQ 86
            + ++L L  N        +  +   L+ + LS  +          +++ L  L L GN 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 87  LQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGN 146
           +Q         L+ L+ L      L       I +L +L  L+++ N +    +P    N
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 147 QSSLQTLYLSYNQLSGPIPS 166
            ++L+ L LS N++     +
Sbjct: 148 LTNLEHLDLSSNKIQSIYCT 167

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 70.1 bits (172), Expect = 9e-15
 Identities = 31/140 (22%), Positives = 51/140 (36%), Gaps = 4/140 (2%)

Query: 25  HLSNLESLFLKNNMFH--GKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL 82
            L +LE L L  N     G    +      L+ + LS +    T+      + +L  L  
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDF 403

Query: 83  RGNQLQGEIPEE-LGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIP 141
           + + L+         +L  L  L + +     A       LSSL  L ++ N+     +P
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463

Query: 142 SLLGNQSSLQTLYLSYNQLS 161
            +     +L  L LS  QL 
Sbjct: 464 DIFTELRNLTFLDLSQCQLE 483

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 68.6 bits (168), Expect = 3e-14
 Identities = 33/177 (18%), Positives = 59/177 (33%), Gaps = 6/177 (3%)

Query: 2   SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLD 61
            S  ++  + N L   L          L+ L L              +   L  + L+ +
Sbjct: 28  FSTKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 62  DFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF- 120
                       ++ L +L      L       +G+L  L+ L + +N +        F 
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 121 NLSSLSNLDLSVNNLTG---GIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKFSL 174
           NL++L +LDLS N +       +  L        +L LS N ++  I      +  L
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRL 202

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 68.2 bits (167), Expect = 4e-14
 Identities = 35/163 (21%), Positives = 63/163 (38%), Gaps = 5/163 (3%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIP-STLSNCKRLRNISLS 59
            +SL  +  + N +   +  NF   L  LE L  +++        S   + + L  + +S
Sbjct: 372 TTSLKYLDLSFNGVI-TMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429

Query: 60  LDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEE-LGNLAELEMLWLQNNFLTRAIPSS 118
                         ++ L  L + GN  Q     +    L  L  L L    L +  P++
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489

Query: 119 IFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
             +LSSL  L+++ N L   +   +    +SLQ ++L  N   
Sbjct: 490 FNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 65.9 bits (161), Expect = 3e-13
 Identities = 33/167 (19%), Positives = 66/167 (39%), Gaps = 7/167 (4%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +S L ++  T N +   L     + LS+L+ L              + + K L+ ++++ 
Sbjct: 75  LSHLSTLILTGNPI-QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133

Query: 61  DDF-SGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEM----LWLQNNFLTRAI 115
           +   S  +P+   N+T L  L L  N++Q     +L  L ++ +    L L  N +   I
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-I 192

Query: 116 PSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSG 162
               F    L  L L  N  +  ++ + +   + L+   L   +   
Sbjct: 193 QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 33/198 (16%), Positives = 65/198 (32%), Gaps = 37/198 (18%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           + +L  +   +N +     P + ++L+NLE L L +N       + L    ++  ++LSL
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182

Query: 61  D---DFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEE-LGNLAELEMLWL---------- 106
           D   +    I        +L +L LR N     + +  +  LA LE+  L          
Sbjct: 183 DLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242

Query: 107 -----------------------QNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSL 143
                                    ++    I      L+++S+  L    +      S 
Sbjct: 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY 302

Query: 144 LGNQSSLQTLYLSYNQLS 161
                 L+ +   + Q  
Sbjct: 303 NFGWQHLELVNCKFGQFP 320

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 71.8 bits (177), Expect = 1e-15
 Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 9/141 (6%)

Query: 25  HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84
            L++L       N      P  ++N  RL ++ +  +  +   P  + N+++L  L +  
Sbjct: 197 SLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGT 252

Query: 85  NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLL 144
           NQ+       + +L +L+ML + +N ++    S + NLS L++L L+ N L       ++
Sbjct: 253 NQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGN-EDMEVI 307

Query: 145 GNQSSLQTLYLSYNQLSGPIP 165
           G  ++L TL+LS N ++   P
Sbjct: 308 GGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 68.7 bits (169), Expect = 2e-14
 Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 9/138 (6%)

Query: 24  NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR 83
            +++ L SL + NN      P  L+N  +L  + +  +  S      + ++TKL  L + 
Sbjct: 218 ANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVG 273

Query: 84  GNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSL 143
            NQ+       L NL++L  L+L NN L       I  L++L+ L LS N++T  I P  
Sbjct: 274 SNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT-DIRP-- 328

Query: 144 LGNQSSLQTLYLSYNQLS 161
           L + S + +   +   + 
Sbjct: 329 LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 66.0 bits (162), Expect = 2e-13
 Identities = 29/165 (17%), Positives = 65/165 (39%), Gaps = 13/165 (7%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           ++  +       ++   +       L ++  L +            +     L  ++L+ 
Sbjct: 21  LAEGIRAVLQKASVTDVVTQE---ELESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNG 75

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           +  +   P  + N+ KL  LY+  N++       L NL  L  L+L  + ++   P  + 
Sbjct: 76  NQITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISP--LA 129

Query: 121 NLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIP 165
           NL+ + +L+L  N+       S L N + L  L ++ +++    P
Sbjct: 130 NLTKMYSLNLGANHNLS--DLSPLSNMTGLNYLTVTESKVKDVTP 172

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 65.3 bits (160), Expect = 3e-13
 Identities = 37/144 (25%), Positives = 70/144 (48%), Gaps = 11/144 (7%)

Query: 25  HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84
           +L++L SL L  N      P  L++   L   +  ++  +   P  + N+T+L  L +  
Sbjct: 175 NLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGN 230

Query: 85  NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLL 144
           N++    P  L NL++L  L +  N ++    +++ +L+ L  L++  N ++     S+L
Sbjct: 231 NKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD---ISVL 283

Query: 145 GNQSSLQTLYLSYNQLSGPIPSFI 168
            N S L +L+L+ NQL       I
Sbjct: 284 NNLSQLNSLFLNNNQLGNEDMEVI 307

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 63.3 bits (155), Expect = 2e-12
 Identities = 32/143 (22%), Positives = 59/143 (41%), Gaps = 11/143 (7%)

Query: 25  HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84
            L+      L+          T    + +  + ++ +       + I  +T L  L L G
Sbjct: 20  DLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKV--ASIQGIEYLTNLEYLNLNG 75

Query: 85  NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLL 144
           NQ+    P  L NL +L  L++  N +T    S++ NL++L  L L+ +N++     S L
Sbjct: 76  NQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISD---ISPL 128

Query: 145 GNQSSLQTLYLSYNQLSGPIPSF 167
            N + + +L L  N     +   
Sbjct: 129 ANLTKMYSLNLGANHNLSDLSPL 151

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.1 bits (118), Expect = 1e-07
 Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 25  HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84
            L+ L+ L + +N       S L+N  +L ++ L+ +       + IG +T L  L+L  
Sbjct: 263 DLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQ 320

Query: 85  NQLQGEIPEELGNLAELEMLWLQNNFLTR 113
           N +    P  L +L++++     N  + +
Sbjct: 321 NHITDIRP--LASLSKMDSADFANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.8 bits (112), Expect = 8e-07
 Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 25/115 (21%)

Query: 71  IGNVTKLIRLYLRGNQLQGEIP--------------------EELGNLAELEMLWLQNNF 110
             ++ + IR  L+   +   +                     + +  L  LE L L  N 
Sbjct: 18  DADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQ 77

Query: 111 LTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIP 165
           +T   P  + NL  L+NL +  N +T     S L N ++L+ LYL+ + +S   P
Sbjct: 78  ITDISP--LSNLVKLTNLYIGTNKIT---DISALQNLTNLRELYLNEDNISDISP 127

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 7/89 (7%)

Query: 77  LIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136
              L      +    P    +LAE     LQ   +T  +      L S++ L ++   + 
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 137 GGIIPSLLGNQSSLQTLYLSYNQLSGPIP 165
                  +   ++L+ L L+ NQ++   P
Sbjct: 58  S---IQGIEYLTNLEYLNLNGNQITDISP 83

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 71.6 bits (176), Expect = 2e-15
 Identities = 42/179 (23%), Positives = 71/179 (39%), Gaps = 11/179 (6%)

Query: 2   SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKI--PSTLSNCKRLRNISLS 59
            +L  +R   N +  ++  +  N L+ +  + L  N               K+L  I ++
Sbjct: 121 KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179

Query: 60  LDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEE-LGNLAELEMLWLQNNFLTRAIPSS 118
             + + TIP+  G    L  L+L GN++  ++    L  L  L  L L  N ++     S
Sbjct: 180 DTNIT-TIPQ--GLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGS 235

Query: 119 IFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKFSLLDN 177
           + N   L  L L+ N L    +P  L +   +Q +YL  N +S  I S   C       
Sbjct: 236 LANTPHLRELHLNNNKLV--KVPGGLADHKYIQVVYLHNNNISA-IGSNDFCPPGYNTK 291

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 63.1 bits (154), Expect = 2e-12
 Identities = 36/166 (21%), Positives = 62/166 (37%), Gaps = 14/166 (8%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           M  L  IR  +  +   +P        +L  L L  N       ++L     L  + LS 
Sbjct: 170 MKKLSYIRIADTNI-TTIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 225

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           +  S      + N   L  L+L  N+L  ++P  L +   +++++L NN ++  I S+ F
Sbjct: 226 NSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA-IGSNDF 283

Query: 121 -------NLSSLSNLDLSVNNLTGGII-PSLLGNQSSLQTLYLSYN 158
                    +S S + L  N +    I PS          + L   
Sbjct: 284 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 60.0 bits (146), Expect = 2e-11
 Identities = 37/156 (23%), Positives = 63/156 (40%), Gaps = 15/156 (9%)

Query: 11  NNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLS---LDDFSGTI 67
            N    E+      +L NL +L L NN      P   +   +L  + LS   L +    +
Sbjct: 60  QNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM 119

Query: 68  PKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRA-IPSSIF-NLSSL 125
           PK       L  L +  N++          L ++ ++ L  N L  + I +  F  +  L
Sbjct: 120 PK------TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173

Query: 126 SNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
           S + ++  N+T   IP   G   SL  L+L  N+++
Sbjct: 174 SYIRIADTNITT--IPQ--GLPPSLTELHLDGNKIT 205

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 26/172 (15%), Positives = 52/172 (30%), Gaps = 20/172 (11%)

Query: 1   MSSLLSIRFTNNTL-FGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLR----N 55
           ++ ++ +    N L    +       +  L  + + +            +   L      
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNK 203

Query: 56  I-SLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRA 114
           I  +      G           L +L L  N +       L N   L  L L NN L + 
Sbjct: 204 ITKVDAASLKGL--------NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK- 254

Query: 115 IPSSIFNLSSLSNLDLSVNNLT-----GGIIPSLLGNQSSLQTLYLSYNQLS 161
           +P  + +   +  + L  NN++         P     ++S   + L  N + 
Sbjct: 255 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 66  TIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSL 125
            +PK++   T    L L+ N++      +  NL  L  L L NN +++  P +   L  L
Sbjct: 45  KVPKDLPPDTA--LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102

Query: 126 SNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
             L LS N L    +P  +    +LQ L +  N+++
Sbjct: 103 ERLYLSKNQLK--ELPEKM--PKTLQELRVHENEIT 134

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 71.2 bits (175), Expect = 2e-15
 Identities = 39/165 (23%), Positives = 66/165 (40%), Gaps = 9/165 (5%)

Query: 2   SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNM--FHGKIPSTLSNCKRLRNISLS 59
           SS   +   +N L   LP    + L+ L  L L +N   F G    +      L+ + LS
Sbjct: 28  SSATRLELESNKL-QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 60  LDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEE--LGNLAELEMLWLQNNFLTRAIPS 117
            +    T+      + +L  L  + + L+ ++ E     +L  L  L + +        +
Sbjct: 87  FNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTR-VAFN 143

Query: 118 SIF-NLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
            IF  LSSL  L ++ N+     +P +     +L  L LS  QL 
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 69.7 bits (171), Expect = 9e-15
 Identities = 36/162 (22%), Positives = 60/162 (37%), Gaps = 8/162 (4%)

Query: 17  ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDD--FSGTIPKEIGNV 74
            +P       S+   L L++N              +L  +SLS +   F G   +     
Sbjct: 21  SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT 77

Query: 75  TKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVN 133
           T L  L L  N +   +      L +LE L  Q++ L +    S+F +L +L  LD+S  
Sbjct: 78  TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 136

Query: 134 NLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKFSLL 175
           +        +    SSL+ L ++ N         I  +   L
Sbjct: 137 HTRV-AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 67.0 bits (164), Expect = 7e-14
 Identities = 33/164 (20%), Positives = 65/164 (39%), Gaps = 5/164 (3%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +  L  + F ++ L      +    L NL  L + +           +    L  + ++ 
Sbjct: 100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 159

Query: 61  DDFSGTIPKEI-GNVTKLIRLYLRGNQLQGEIPEE-LGNLAELEMLWLQNNFLTRAIPSS 118
           + F      +I   +  L  L L   QL+ ++      +L+ L++L + +N     + + 
Sbjct: 160 NSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFS-LDTF 217

Query: 119 IF-NLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
            +  L+SL  LD S+N++       L    SSL  L L+ N  +
Sbjct: 218 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 66.6 bits (163), Expect = 1e-13
 Identities = 38/164 (23%), Positives = 63/164 (38%), Gaps = 9/164 (5%)

Query: 2   SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIP-STLSNCKRLRNISLSL 60
           +SL  +  + N +   +  NF   L  LE L  +++        S   + + L  + +S 
Sbjct: 78  TSLKYLDLSFNGV-ITMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 135

Query: 61  DDFSGTIPKEI-GNVTKLIRLYLRGNQLQGEIPEE-LGNLAELEMLWLQNNFLTRAIPSS 118
                     I   ++ L  L + GN  Q     +    L  L  L L    L + +  +
Sbjct: 136 THTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPT 193

Query: 119 IF-NLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
            F +LSSL  L++S NN    +        +SLQ L  S N + 
Sbjct: 194 AFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIM 236

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 69.6 bits (171), Expect = 8e-15
 Identities = 33/161 (20%), Positives = 66/161 (40%), Gaps = 12/161 (7%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
            +     + T+++L  +   +      N++ L L  N       + L+   +L  ++LS 
Sbjct: 9   GNRYKIEKVTDSSL-KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           +        ++ +++ L  L L  N +Q     EL     +E L   NN ++R +  S  
Sbjct: 68  NVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR-VSCSRG 119

Query: 121 NLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
                 N+ L+ N +T  +     G +S +Q L L  N++ 
Sbjct: 120 --QGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEID 157

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 66.6 bits (163), Expect = 1e-13
 Identities = 33/181 (18%), Positives = 62/181 (34%), Gaps = 7/181 (3%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHG-KIPSTLSNCKRLRNISLS 59
                +I   NN +   L        S ++ L LK N           ++   L +++L 
Sbjct: 119 GQGKKNIYLANNKI-TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 60  LDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSI 119
            +     +  ++    KL  L L  N+L   +  E  + A +  + L+NN L   I  ++
Sbjct: 178 YNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKAL 233

Query: 120 FNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKFSLLDNIR 179
               +L + DL  N    G +         +QT+     +      +   C    L +  
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL-TGQNEEECTVPTLGHYG 292

Query: 180 F 180
            
Sbjct: 293 A 293

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 63.5 bits (155), Expect = 1e-12
 Identities = 26/137 (18%), Positives = 57/137 (41%), Gaps = 11/137 (8%)

Query: 25  HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84
           + +  +   + ++     + S   +   ++ + LS +  S     ++   TKL  L L  
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 85  NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLL 144
           N L      +L +L+ L  L L NN++       +    S+  L  + NN++   +    
Sbjct: 68  NVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS--RVSCSR 118

Query: 145 GNQSSLQTLYLSYNQLS 161
           G     + +YL+ N+++
Sbjct: 119 G--QGKKNIYLANNKIT 133

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 60.8 bits (148), Expect = 1e-11
 Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 8/119 (6%)

Query: 43  IPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELE 102
           I     N  R +   ++       +     +   +  L L GN L      +L    +LE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 103 MLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
           +L L +N L       + +LS+L  LDL+ N +        L    S++TL+ + N +S
Sbjct: 62  LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNIS 112

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 38.0 bits (89), Expect = 7e-04
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 114 AIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
           AI     N +      ++ ++L    + SL  +  +++ L LS N LS
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLS 47

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 69.4 bits (170), Expect = 9e-15
 Identities = 36/153 (23%), Positives = 54/153 (35%), Gaps = 8/153 (5%)

Query: 11  NNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKE 70
           +  L            + L  L L                  L  + LS +    ++P  
Sbjct: 39  SENLLYTFSLATLMPYTRLTQLNLDRA--ELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLL 95

Query: 71  IGNVTKLIRLYLRGNQLQGEIPEEL-GNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNL 128
              +  L  L +  N+L   +P      L EL+ L+L+ N L   +P  +      L  L
Sbjct: 96  GQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKL 153

Query: 129 DLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
            L+ NNLT  +   LL    +L TL L  N L 
Sbjct: 154 SLANNNLT-ELPAGLLNGLENLDTLLLQENSLY 185

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.8 bits (127), Expect = 6e-09
 Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 4/83 (4%)

Query: 79  RLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGG 138
            L+L  N L       L     L  L L    LT  +      L  L  LDLS N L   
Sbjct: 35  ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLGTLDLSHNQLQS- 91

Query: 139 IIPSLLGNQSSLQTLYLSYNQLS 161
            +P L     +L  L +S+N+L+
Sbjct: 92  -LPLLGQTLPALTVLDVSFNRLT 113

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.4 bits (126), Expect = 8e-09
 Identities = 36/135 (26%), Positives = 51/135 (37%), Gaps = 7/135 (5%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +  L ++  ++N L   LP      L  L  L +  N         L     L+ + L  
Sbjct: 76  LPVLGTLDLSHNQL-QSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133

Query: 61  DDFSGTIPKEI-GNVTKLIRLYLRGNQLQGEIPEEL-GNLAELEMLWLQNNFLTRAIPSS 118
           ++   T+P  +     KL +L L  N L  E+P  L   L  L+ L LQ N L   IP  
Sbjct: 134 NELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKG 190

Query: 119 IFNLSSLSNLDLSVN 133
            F    L    L  N
Sbjct: 191 FFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 6/89 (6%)

Query: 73  NVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSV 132
            V   + +      L   +P +L    +  +L L  N L     +++   + L+ L+L  
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 133 NNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
             LT      + G    L TL LS+NQL 
Sbjct: 65  AELT---KLQVDGTLPVLGTLDLSHNQLQ 90

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 70.2 bits (172), Expect = 1e-14
 Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 3/140 (2%)

Query: 25  HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEI-GNVTKLIRLYLR 83
            L+  E L L  N       S+    ++L+ + L       TI KE   N+  L  L L 
Sbjct: 22  VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81

Query: 84  GNQLQGEIPEELGNLAELEMLWLQNNFLTRAI--PSSIFNLSSLSNLDLSVNNLTGGIIP 141
            +++    P+    L  L  L L    L+ A+       NL +L+ LDLS N +    + 
Sbjct: 82  SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH 141

Query: 142 SLLGNQSSLQTLYLSYNQLS 161
              G  +SL+++  S NQ+ 
Sbjct: 142 PSFGKLNSLKSIDFSSNQIF 161

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 67.9 bits (166), Expect = 6e-14
 Identities = 33/190 (17%), Positives = 60/190 (31%), Gaps = 10/190 (5%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +  L  +   +      +      +L NL  L L ++  +   P        L  + L  
Sbjct: 47  LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYF 106

Query: 61  DDFSGTI--PKEIGNVTKLIRLYLRGNQLQG-EIPEELGNLAELEMLWLQNNFLTRAIPS 117
              S  +       N+  L RL L  NQ++   +    G L  L+ +   +N +      
Sbjct: 107 CGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH 166

Query: 118 SIFNLS--SLSNLDLSVNNLTGGIIPSLLGNQS-----SLQTLYLSYNQLSGPIPSFILC 170
            +  L   +LS   L+ N+L   +        +      L+ L +S N  +  I      
Sbjct: 167 ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSN 226

Query: 171 KFSLLDNIRF 180
             S       
Sbjct: 227 AISKSQAFSL 236

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 61.0 bits (148), Expect = 2e-11
 Identities = 28/136 (20%), Positives = 49/136 (36%), Gaps = 6/136 (4%)

Query: 26  LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGN 85
            S++  L L +              K L+ ++L+ +  +    +    +  L  L L  N
Sbjct: 265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324

Query: 86  QLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLG 145
            L          L ++  + LQ N +      +   L  L  LDL  N LT       + 
Sbjct: 325 LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT------IH 378

Query: 146 NQSSLQTLYLSYNQLS 161
              S+  ++LS N+L 
Sbjct: 379 FIPSIPDIFLSGNKLV 394

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 60.6 bits (147), Expect = 2e-11
 Identities = 31/169 (18%), Positives = 59/169 (34%), Gaps = 11/169 (6%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           + +L  +  + N L GEL  +    L  +  + L+ N        T    ++L+ + L  
Sbjct: 313 LDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRD 371

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           +  +      I  +  +  ++L GN+L       L       ++ L  N L         
Sbjct: 372 NALT-----TIHFIPSIPDIFLSGNKLVTLPKINL----TANLIHLSENRLENLDILYFL 422

Query: 121 -NLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFI 168
             +  L  L L+ N  +            SL+ L+L  N L     + +
Sbjct: 423 LRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETEL 471

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 55.2 bits (133), Expect = 1e-09
 Identities = 45/186 (24%), Positives = 71/186 (38%), Gaps = 17/186 (9%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHG-KIPSTLSNCKRLRNISLS 59
           + S+  I  + N L                 + L  N      I   L     L+ + L+
Sbjct: 380 IPSIPDIFLSGNKL-----VTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILN 434

Query: 60  LDDFSGTIPKEI-GNVTKLIRLYLRGNQLQGEIPEEL-----GNLAELEMLWLQNNFLTR 113
            + FS     +       L +L+L  N LQ     EL       L+ L++L+L +N+L  
Sbjct: 435 QNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNS 494

Query: 114 AIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFI--LCK 171
             P    +L++L  L L+ N LT     S     ++L+ L +S NQL  P P     L  
Sbjct: 495 LPPGVFSHLTALRGLSLNSNRLTV---LSHNDLPANLEILDISRNQLLAPNPDVFVSLSV 551

Query: 172 FSLLDN 177
             +  N
Sbjct: 552 LDITHN 557

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.0 bits (122), Expect = 4e-08
 Identities = 32/184 (17%), Positives = 57/184 (30%), Gaps = 23/184 (12%)

Query: 1   MSSLLSIRFTNNTL-FGELPPNFCNHLSNLESLFLKNNMFHG-KIPSTLSNCKRLRNISL 58
           +  L  +R     L    L   +  +L  L  L L  N      +  +      L++I  
Sbjct: 96  LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF 155

Query: 59  SLDDFSGTIPKEIGNVT--KLIRLYLRGNQLQGEIPEELGNLAE------LEMLWLQNNF 110
           S +        E+  +    L    L  N L   +  + G          LE+L +  N 
Sbjct: 156 SSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG 215

Query: 111 LTRAIPSSIFN------------LSSLSNLDLSVNNLTGGIIPSLLG-NQSSLQTLYLSY 157
            T  I  +  N               +       +N+      +  G  +SS++ L LS+
Sbjct: 216 WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSH 275

Query: 158 NQLS 161
             + 
Sbjct: 276 GFVF 279

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 67.3 bits (165), Expect = 1e-14
 Identities = 25/137 (18%), Positives = 61/137 (44%), Gaps = 6/137 (4%)

Query: 25  HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84
            +++L  + L N        + +     +++++++    +   P  I  ++ L RL + G
Sbjct: 42  QMNSLTYITLANINV--TDLTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMG 97

Query: 85  NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLL 144
             +  +    L  L  L +L + ++    +I + I  L  ++++DLS N     I+P  L
Sbjct: 98  KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--L 155

Query: 145 GNQSSLQTLYLSYNQLS 161
                L++L + ++ + 
Sbjct: 156 KTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.5 bits (137), Expect = 1e-10
 Identities = 26/114 (22%), Positives = 43/114 (37%), Gaps = 3/114 (2%)

Query: 24  NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR 83
           + LSNLE L +            LS    L  + +S      +I  +I  + K+  + L 
Sbjct: 85  SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS 144

Query: 84  GNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG 137
            N    +I   L  L EL+ L +Q + +       I +   L+ L      + G
Sbjct: 145 YNGAITDI-MPLKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 45.3 bits (108), Expect = 1e-06
 Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 5/105 (4%)

Query: 64  SGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLS 123
           S T       +  L  + L    +       +     ++ L + N   T    + I  LS
Sbjct: 33  SSTANITEAQMNSLTYITLANINVTDL--TGIEYAHNIKDLTINNIHATNY--NPISGLS 88

Query: 124 SLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFI 168
           +L  L +   ++T   IP+L    +SL  L +S++     I + I
Sbjct: 89  NLERLRIMGKDVTSDKIPNL-SGLTSLTLLDISHSAHDDSILTKI 132

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 68.0 bits (166), Expect = 5e-14
 Identities = 38/156 (24%), Positives = 58/156 (37%), Gaps = 24/156 (15%)

Query: 24  NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR 83
                L +L +  N     +P        L   S  L              + L +L++ 
Sbjct: 78  ALPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALP-------SGLCKLWIF 129

Query: 84  GNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSL 143
           GNQL   +P     L   + L + +N L  ++P+     S L  L    N LT   +P L
Sbjct: 130 GNQLT-SLPVLPPGL---QELSVSDNQLA-SLPALP---SELCKLWAYNNQLTS--LPML 179

Query: 144 LGNQSSLQTLYLSYNQLSGPIPSFI--LCKFSLLDN 177
                 LQ L +S NQL+  +P+    L K    +N
Sbjct: 180 PSG---LQELSVSDNQLAS-LPTLPSELYKLWAYNN 211

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 63.4 bits (154), Expect = 2e-12
 Identities = 44/194 (22%), Positives = 71/194 (36%), Gaps = 38/194 (19%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
              L  +  ++N L   LP         L  L+  NN     +P   S    L+ +S+S 
Sbjct: 140 PPGLQELSVSDNQL-ASLPALPSE----LCKLWAYNNQLT-SLPMLPSG---LQELSVSD 190

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEM----------------- 103
           +  + ++P        L +L+   N+L   +P     L EL +                 
Sbjct: 191 NQLA-SLPTLPSE---LYKLWAYNNRLT-SLPALPSGLKELIVSGNRLTSLPVLPSELKE 245

Query: 104 LWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGP 163
           L +  N LT ++P      S L +L +  N LT   +P  L + SS  T+ L  N LS  
Sbjct: 246 LMVSGNRLT-SLPMLP---SGLLSLSVYRNQLTR--LPESLIHLSSETTVNLEGNPLS-E 298

Query: 164 IPSFILCKFSLLDN 177
                L + +    
Sbjct: 299 RTLQALREITSAPG 312

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 60.7 bits (147), Expect = 2e-11
 Identities = 35/154 (22%), Positives = 57/154 (37%), Gaps = 23/154 (14%)

Query: 26  LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGN 85
            +    L +  +     +P  L     +  + +  ++ + ++P        L  L + GN
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT-SLPALPPE---LRTLEVSGN 91

Query: 86  QLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLG 145
           QL   +P     L EL +       L           S L  L +  N LT   +P L  
Sbjct: 92  QLT-SLPVLPPGLLELSIFSNPLTHLPA-------LPSGLCKLWIFGNQLTS--LPVLPP 141

Query: 146 NQSSLQTLYLSYNQLSGPIPSFI--LCKFSLLDN 177
               LQ L +S NQL+  +P+    LCK    +N
Sbjct: 142 G---LQELSVSDNQLAS-LPALPSELCKLWAYNN 171

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.7 bits (116), Expect = 2e-07
 Identities = 31/169 (18%), Positives = 52/169 (30%), Gaps = 20/169 (11%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRL--RNISL 58
            S L  +  + N L   LP       S L+ L +  N     +P   S    L      L
Sbjct: 220 PSGLKELIVSGNRL-TSLPV----LPSELKELMVSGNRL-TSLPMLPSGLLSLSVYRNQL 273

Query: 59  SLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPS- 117
           +       +P+ + +++    + L GN L     + L  +               A  S 
Sbjct: 274 T------RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASA 327

Query: 118 -SIFNLSSLSNLDLSVNNLTGGIIP----SLLGNQSSLQTLYLSYNQLS 161
                   L+  D  V    G   P     + G + +     L  ++LS
Sbjct: 328 PRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLS 376

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 67.3 bits (165), Expect = 6e-14
 Identities = 40/163 (24%), Positives = 73/163 (44%), Gaps = 11/163 (6%)

Query: 2   SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNN-MFHGKIPSTLSNCKRLRNISLSL 60
           SSL+ +R  +N +  ++P    + L N+  + +  N + +        +  +L  + +S 
Sbjct: 123 SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISE 181

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEE-LGNLAELEMLWLQNNFLTRAIPSSI 119
              +  IPK       L  L+L  N++Q  I  E L   ++L  L L +N +   I +  
Sbjct: 182 AKLT-GIPK--DLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRM-IENGS 236

Query: 120 F-NLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
              L +L  L L  N L+   +P+ L +   LQ +YL  N ++
Sbjct: 237 LSFLPTLRELHLDNNKLS--RVPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 60.8 bits (148), Expect = 1e-11
 Identities = 30/136 (22%), Positives = 55/136 (40%), Gaps = 5/136 (3%)

Query: 27  SNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQ 86
            +   L L+NN             + L  + L  +  S    K    + KL +LY+  N 
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 87  LQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNNLTGGIIPSLLG 145
           L  EIP  L   + L  L + +N + + +P  +F  L +++ +++  N L          
Sbjct: 114 LV-EIPPNL--PSSLVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169

Query: 146 NQSSLQTLYLSYNQLS 161
           +   L  L +S  +L+
Sbjct: 170 DGLKLNYLRISEAKLT 185

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 57.7 bits (140), Expect = 1e-10
 Identities = 27/165 (16%), Positives = 58/165 (35%), Gaps = 14/165 (8%)

Query: 3   SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDD 62
            L  +R +   L   +P +       L  L L +N         L    +L  + L  + 
Sbjct: 173 KLNYLRISEAKL-TGIPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ 228

Query: 63  FSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-- 120
                   +  +  L  L+L  N+L   +P  L +L  L++++L  N +T+ +  + F  
Sbjct: 229 IRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITK-VGVNDFCP 286

Query: 121 -----NLSSLSNLDLSVNNLTGGII-PSLLGNQSSLQTLYLSYNQ 159
                  +  + + L  N +    + P+     +    +     +
Sbjct: 287 VGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 52.3 bits (126), Expect = 9e-09
 Identities = 37/172 (21%), Positives = 59/172 (34%), Gaps = 21/172 (12%)

Query: 1   MSSLLSIRFTNNTL-FGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLR----N 55
           + ++  I    N L      P   + L  L  L +      G           L      
Sbjct: 146 LRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNK 204

Query: 56  IS-LSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRA 114
           I  + L+D            +KL RL L  NQ++      L  L  L  L L NN L+R 
Sbjct: 205 IQAIELEDLLRY--------SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR- 255

Query: 115 IPSSIFNLSSLSNLDLSVNNLT---GGIIPSL--LGNQSSLQTLYLSYNQLS 161
           +P+ + +L  L  + L  NN+T         +     ++    + L  N + 
Sbjct: 256 VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 67.6 bits (165), Expect = 8e-14
 Identities = 32/145 (22%), Positives = 60/145 (41%), Gaps = 11/145 (7%)

Query: 17  ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTK 76
           +   +      N++ L L  N       + L+   +L  ++LS +    T+   + +++ 
Sbjct: 24  QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLST 81

Query: 77  LIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136
           L  L L  N +Q     EL     +E L   NN ++R +  S        N+ L+ N +T
Sbjct: 82  LRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR-VSCSRG--QGKKNIYLANNKIT 133

Query: 137 GGIIPSLLGNQSSLQTLYLSYNQLS 161
             +     G +S +Q L L  N++ 
Sbjct: 134 -MLRDLDEGCRSRVQYLDLKLNEID 157

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 63.3 bits (154), Expect = 2e-12
 Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 8/137 (5%)

Query: 26  LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGN 85
             ++E+L   NN       S        +NI L+ +  +     + G  +++  L L+ N
Sbjct: 98  GPSIETLHAANNNISRVSCSRGQG---KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154

Query: 86  QLQG-EIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLL 144
           ++      E   +   LE L LQ NF+   +   +   + L  LDLS N L    +    
Sbjct: 155 EIDTVNFAELAASSDTLEHLNLQYNFIYD-VKGQVV-FAKLKTLDLSSNKLAF--MGPEF 210

Query: 145 GNQSSLQTLYLSYNQLS 161
            + + +  + L  N+L 
Sbjct: 211 QSAAGVTWISLRNNKLV 227

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 58.3 bits (141), Expect = 1e-10
 Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 8/119 (6%)

Query: 43  IPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELE 102
           I     N  R +   ++       +     +   +  L L GN L      +L    +LE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 103 MLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
           +L L +N L       + +LS+L  LDL+ N +        L    S++TL+ + N +S
Sbjct: 62  LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQE------LLVGPSIETLHAANNNIS 112

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 48.3 bits (115), Expect = 3e-07
 Identities = 23/147 (15%), Positives = 45/147 (30%), Gaps = 4/147 (2%)

Query: 17  ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFS-GTIPKEIGNVT 75
            + P F +  + +  + L+NN     I   L   + L +  L  + F  GT+        
Sbjct: 205 FMGPEFQS-AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262

Query: 76  KLIRLYLRGNQ-LQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNN 134
           ++  +  +  + L G+  EE                L       +  L    +  LS   
Sbjct: 263 RVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQG 322

Query: 135 LTGGIIPSLLGNQSSLQTLYLSYNQLS 161
                +     NQ+  + +     Q  
Sbjct: 323 SETERLECERENQARQREIDALKEQYR 349

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 65.5 bits (159), Expect = 4e-13
 Identities = 31/151 (20%), Positives = 50/151 (33%), Gaps = 9/151 (5%)

Query: 17  ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNIS------LSLDDFSGTIPKE 70
                   + S L+++      +   + S       +  +       L L     T+   
Sbjct: 399 LYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH 458

Query: 71  IGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDL 130
           +  +  +  L L  N+L+  +P  L  L  LE+L   +N L       + NL  L  L L
Sbjct: 459 LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLL 515

Query: 131 SVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
             N L        L +   L  L L  N L 
Sbjct: 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 53.6 bits (128), Expect = 5e-09
 Identities = 29/142 (20%), Positives = 48/142 (33%), Gaps = 7/142 (4%)

Query: 20  PNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIR 79
            +       L+ L  +N      I   +     L     +L  FS     +     +   
Sbjct: 365 QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP---MRAAY 421

Query: 80  LYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGI 139
           L    ++   E        A++ +L L +  LT      +  L  +++LDLS N L    
Sbjct: 422 LDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRA-- 477

Query: 140 IPSLLGNQSSLQTLYLSYNQLS 161
           +P  L     L+ L  S N L 
Sbjct: 478 LPPALAALRCLEVLQASDNALE 499

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 50.9 bits (121), Expect = 4e-08
 Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 10/110 (9%)

Query: 25  HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLS---LDDFSGTIPKEIGNVTKLIRLY 81
            L  +  L L +N     +P  L+  + L  +  S   L++  G     + N+ +L  L 
Sbjct: 461 QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVDG-----VANLPRLQELL 514

Query: 82  LRGNQLQG-EIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDL 130
           L  N+LQ     + L +   L +L LQ N L +           L ++  
Sbjct: 515 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 65.4 bits (159), Expect = 5e-13
 Identities = 38/199 (19%), Positives = 63/199 (31%), Gaps = 38/199 (19%)

Query: 2   SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLD 61
             +  +  T N L   LP       ++LE L   +N     +P   ++ K L   +  L 
Sbjct: 80  PQITVLEITQNAL-ISLPEL----PASLEYLDACDNRLS-TLPELPASLKHLDVDNNQLT 133

Query: 62  DFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAEL-----------------EML 104
                +P+       L  +    NQL   +PE   +L  L                 E L
Sbjct: 134 ----MLPELPAL---LEYINADNNQLT-MLPELPTSLEVLSVRNNQLTFLPELPESLEAL 185

Query: 105 WLQNNFLTRAIPSSIFNLSSLSN----LDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQL 160
            +  N L  ++P+                   N +T   IP  + +     T+ L  N L
Sbjct: 186 DVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRITH--IPENILSLDPTCTIILEDNPL 242

Query: 161 SGPIPSFILCKFSLLDNIR 179
           S  I   +  + +  D   
Sbjct: 243 SSRIRESLSQQTAQPDYHG 261

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 65.0 bits (158), Expect = 6e-13
 Identities = 38/159 (23%), Positives = 60/159 (37%), Gaps = 25/159 (15%)

Query: 17  ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTK 76
            LP N       +  L +  N     +P   ++ + L      L     T+P+   +   
Sbjct: 73  SLPDNLP---PQITVLEITQNALI-SLPELPASLEYLDACDNRLS----TLPELPAS--- 121

Query: 77  LIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136
           L  L +  NQL   +PE       LE +   NN LT  +P      +SL  L +  N LT
Sbjct: 122 LKHLDVDNNQLT-MLPELPAL---LEYINADNNQLT-MLPELP---TSLEVLSVRNNQLT 173

Query: 137 GGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKFSLL 175
              +P L  +   L+ L +S N L   +P+  +      
Sbjct: 174 F--LPELPES---LEALDVSTNLLES-LPAVPVRNHHSE 206

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 47.3 bits (112), Expect = 6e-07
 Identities = 23/157 (14%), Positives = 42/157 (26%), Gaps = 13/157 (8%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
            +SL  +   NN L   LP        +LE+L +  N+    +P+            +  
Sbjct: 159 PTSLEVLSVRNNQL-TFLPEL----PESLEALDVSTNLLES-LPAVPVRNHHSEETEIFF 212

Query: 61  DDFSG----TIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIP 116
                     IP+ I ++     + L  N L   I E L              + + +  
Sbjct: 213 R-CRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDG 271

Query: 117 SSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTL 153
               N       D             +     + +  
Sbjct: 272 QQ--NTLHRPLADAVTAWFPENKQSDVSQIWHAFEHE 306

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 42.7 bits (100), Expect = 3e-05
 Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 8/98 (8%)

Query: 66  TIPKEIGNVTKLIRL--YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLS 123
           +I   I N   L +   Y   +    +         +  +     N     +   +  ++
Sbjct: 2   SIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--IN 59

Query: 124 SLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
             S L L+  NL+   +P  L     +  L ++ N L 
Sbjct: 60  QFSELQLNRLNLS--SLPDNLP--PQITVLEITQNALI 93

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 64.2 bits (157), Expect = 1e-12
 Identities = 41/142 (28%), Positives = 62/142 (43%), Gaps = 12/142 (8%)

Query: 24  NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR 83
            +L+NL  L L +N       S LS    L+ +S        T  K + N+T L RL + 
Sbjct: 131 KNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG---NQVTDLKPLANLTTLERLDIS 185

Query: 84  GNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSL 143
            N++       L  L  LE L   NN ++   P  +  L++L  L L+ N L        
Sbjct: 186 SNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD---IGT 238

Query: 144 LGNQSSLQTLYLSYNQLSGPIP 165
           L + ++L  L L+ NQ+S   P
Sbjct: 239 LASLTNLTDLDLANNQISNLAP 260

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 64.2 bits (157), Expect = 1e-12
 Identities = 35/163 (21%), Positives = 62/163 (38%), Gaps = 13/163 (7%)

Query: 3   SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDD 62
            L S   T +T   ++  +    L+      L        +    ++  ++   +L  D 
Sbjct: 2   PLGSATITQDTPINQIFTD--TALAEKMKTVLGKTNVTDTVS--QTDLDQVT--TLQADR 55

Query: 63  FSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNL 122
                   +  +  L ++    NQL    P  L NL +L  + + NN +    P  + NL
Sbjct: 56  LGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANL 111

Query: 123 SSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIP 165
           ++L+ L L  N +T       L N ++L  L LS N +S    
Sbjct: 112 TNLTGLTLFNNQITD---IDPLKNLTNLNRLELSSNTISDISA 151

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 63.4 bits (155), Expect = 2e-12
 Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 12/142 (8%)

Query: 24  NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR 83
           + L++L+ L   N +        L+N   L    L +     +    +  +T L  L   
Sbjct: 153 SGLTSLQQLSFGNQVTD---LKPLANLTTLE--RLDISSNKVSDISVLAKLTNLESLIAT 207

Query: 84  GNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSL 143
            NQ+    P  LG L  L+ L L  N L      ++ +L++L++LDL+ N ++  + P  
Sbjct: 208 NNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN-LAP-- 260

Query: 144 LGNQSSLQTLYLSYNQLSGPIP 165
           L   + L  L L  NQ+S   P
Sbjct: 261 LSGLTKLTELKLGANQISNISP 282

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 62.3 bits (152), Expect = 5e-12
 Identities = 43/152 (28%), Positives = 67/152 (44%), Gaps = 11/152 (7%)

Query: 25  HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84
           +L+ LE L + +N       S L+    L ++  + +  S   P  +G +T L  L L G
Sbjct: 175 NLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNG 230

Query: 85  NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLL 144
           NQL+      L +L  L  L L NN ++   P  +  L+ L+ L L  N ++     S L
Sbjct: 231 NQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN---ISPL 283

Query: 145 GNQSSLQTLYLSYNQLSGPIPSFILCKFSLLD 176
              ++L  L L+ NQL    P   L   + L 
Sbjct: 284 AGLTALTNLELNENQLEDISPISNLKNLTYLT 315

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 57.3 bits (139), Expect = 3e-10
 Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 11/155 (7%)

Query: 24  NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR 83
           ++L NL  L L  N      P  +S+  +L+ +    +  S      + N+T +  L   
Sbjct: 306 SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAG 361

Query: 84  GNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSL 143
            NQ+    P  L NL  +  L L +   T   P +     S+ N   +V      I P+ 
Sbjct: 362 HNQISDLTP--LANLTRITQLGLNDQAWT-NAPVNYKANVSIPNTVKNVTGAL--IAPAT 416

Query: 144 LGNQSSLQTLYLSYNQLSGPIPSFILCKFSLLDNI 178
           + +  S     +++N  S    + +   FS    I
Sbjct: 417 ISDGGSYTEPDITWNLPS--YTNEVSYTFSQPVTI 449

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 64.3 bits (157), Expect = 1e-12
 Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 3/138 (2%)

Query: 25  HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84
            L+N + +  KN+       + L + +++  ++L+                 + +LY+  
Sbjct: 43  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 102

Query: 85  NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNNLTGGIIPSL 143
           N ++   P    N+  L +L L+ N L+  +P  IF N   L+ L +S NNL   I    
Sbjct: 103 NAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLE-RIEDDT 160

Query: 144 LGNQSSLQTLYLSYNQLS 161
               +SLQ L LS N+L+
Sbjct: 161 FQATTSLQNLQLSSNRLT 178

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 63.1 bits (154), Expect = 2e-12
 Identities = 43/178 (24%), Positives = 66/178 (37%), Gaps = 7/178 (3%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +++   + F N+T+  +LP    +    +E L L +           +    ++ + +  
Sbjct: 44  LNNQKIVTFKNSTM-RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 102

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           +      P    NV  L  L L  N L         N  +L  L + NN L R I    F
Sbjct: 103 NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTF 161

Query: 121 -NLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKFSLLDN 177
              +SL NL LS N LT   +   L    SL    +SYN LS       + +     N
Sbjct: 162 QATTSLQNLQLSSNRLTH--VD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHN 215

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 60.8 bits (148), Expect = 1e-11
 Identities = 31/136 (22%), Positives = 55/136 (40%), Gaps = 8/136 (5%)

Query: 26  LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGN 85
              L  L L++N       + L N   L  + LS ++    +      + +L RLY+  N
Sbjct: 225 NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 282

Query: 86  QLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLG 145
           +L   +      +  L++L L +N L   +  +      L NL L  N++    +   L 
Sbjct: 283 RLV-ALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIV--TLK--LS 336

Query: 146 NQSSLQTLYLSYNQLS 161
              +L+ L LS+N   
Sbjct: 337 THHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 60.4 bits (147), Expect = 2e-11
 Identities = 33/162 (20%), Positives = 65/162 (40%), Gaps = 12/162 (7%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
              +  +   +  +  E+      +   ++ L++  N      P    N   L  + L  
Sbjct: 68  FRQVELLNLNDLQI-EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 126

Query: 61  DDFSGTIPKEI-GNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSI 119
           +D S ++P+ I  N  KL  L +  N L+    +       L+ L L +N LT  +  S+
Sbjct: 127 NDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLSL 184

Query: 120 FNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
               SL + ++S N L+       L    +++ L  S+N ++
Sbjct: 185 I--PSLFHANVSYNLLS------TLAIPIAVEELDASHNSIN 218

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 57.4 bits (139), Expect = 2e-10
 Identities = 20/120 (16%), Positives = 43/120 (35%), Gaps = 3/120 (2%)

Query: 43  IPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELE 102
           I S L       ++ + +         E   +     +  + + ++      L +  ++E
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 103 MLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
           +L L +  +   I +  F    ++  L +  N +   + P +  N   L  L L  N LS
Sbjct: 73  LLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS 130

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 55.1 bits (133), Expect = 1e-09
 Identities = 25/131 (19%), Positives = 44/131 (33%), Gaps = 5/131 (3%)

Query: 25  HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84
           +   L  + L  N     +       +RL  + +S +     +      +  L  L L  
Sbjct: 246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSH 304

Query: 85  NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLL 144
           N L   +         LE L+L +N +   +  S     +L NL LS N+     + +L 
Sbjct: 305 NHLL-HVERNQPQFDRLENLYLDHNSIVT-LKLSTH--HTLKNLTLSHNDWDCNSLRALF 360

Query: 145 GNQSSLQTLYL 155
            N +       
Sbjct: 361 RNVARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 55.1 bits (133), Expect = 1e-09
 Identities = 32/176 (18%), Positives = 59/176 (33%), Gaps = 22/176 (12%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
              L ++  +NN L   +  +     ++L++L L +N       S + +          L
Sbjct: 140 TPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLL 198

Query: 61  DDFSG---------------TIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLW 105
              +                 +   +    +L  L L+ N L  +    L N   L  + 
Sbjct: 199 STLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLT-DTAW-LLNYPGLVEVD 254

Query: 106 LQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
           L  N L + +      +  L  L +S N L    +        +L+ L LS+N L 
Sbjct: 255 LSYNELEKIMYHPFVKMQRLERLYISNNRLV--ALNLYGQPIPTLKVLDLSHNHLL 308

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 11/96 (11%), Positives = 34/96 (35%), Gaps = 1/96 (1%)

Query: 66  TIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSL 125
            I   +        +++           E   L   +++  +N+ + +   + + +   +
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 126 SNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
             L+L+   +   I         ++Q LY+ +N + 
Sbjct: 72  ELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR 106

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 63.1 bits (154), Expect = 1e-12
 Identities = 37/150 (24%), Positives = 60/150 (40%), Gaps = 9/150 (6%)

Query: 18  LPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKL 77
           +       LS+L +L L  N          S    L+ +     + +      IG++  L
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126

Query: 78  IRLYLRGNQLQG-EIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSL----SNLDLS 131
             L +  N +Q  ++PE   NL  LE L L +N +  +I  +    L  +     +LDLS
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLS 185

Query: 132 VNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
           +N +    I      +  L+ L L  NQL 
Sbjct: 186 LNPMNF--IQPGAFKEIRLKELALDTNQLK 213

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 60.8 bits (148), Expect = 9e-12
 Identities = 29/137 (21%), Positives = 57/137 (41%), Gaps = 4/137 (2%)

Query: 27  SNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEI-GNVTKLIRLYLRGN 85
            + ++L L  N        +  +   L+ + LS  +   TI      +++ L  L L GN
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86

Query: 86  QLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNNLTGGIIPSLL 144
            +Q         L+ L+ L      L   + +    +L +L  L+++ N +    +P   
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 145 GNQSSLQTLYLSYNQLS 161
            N ++L+ L LS N++ 
Sbjct: 146 SNLTNLEHLDLSSNKIQ 162

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 41.1 bits (97), Expect = 7e-05
 Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 10/123 (8%)

Query: 18  LPPNFCNHLSNLESLFLKNNMFHG-KIPSTLSNCKRLRNISLSLDDFSGTIPKEI-GNVT 75
           L      HL  L+ L + +N+    K+P   SN   L ++ LS +    +I       + 
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLH 173

Query: 76  KL----IRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDL 130
           ++    + L L  N +   I         L+ L L  N L  ++P  IF  L+SL  + L
Sbjct: 174 QMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWL 231

Query: 131 SVN 133
             N
Sbjct: 232 HTN 234

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 63.6 bits (155), Expect = 2e-12
 Identities = 30/137 (21%), Positives = 47/137 (34%), Gaps = 1/137 (0%)

Query: 26  LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGN 85
            + ++SL L  N         L  C  L+ + L     +        ++  L  L L  N
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84

Query: 86  QLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNNLTGGIIPSLL 144
            L        G L+ L+ L L  N       +S+F NL++L  L +        I     
Sbjct: 85  HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144

Query: 145 GNQSSLQTLYLSYNQLS 161
              +SL  L +    L 
Sbjct: 145 AGLTSLNELEIKALSLR 161

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 63.6 bits (155), Expect = 2e-12
 Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 11/166 (6%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLS- 59
             ++  +      LF        + L  ++ + ++N+       S   + K L  + LS 
Sbjct: 285 TVTIRRLHIPQFYLF-YDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSE 343

Query: 60  --LDDFSGTIPKEIGNVTKLIRLYLRGNQLQ--GEIPEELGNLAELEMLWLQNNFLTRAI 115
             + +         G    L  L L  N L+   +  E L  L  L  L +  N     +
Sbjct: 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-M 402

Query: 116 PSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
           P S      +  L+LS   +   ++ +      +L+ L +S N L 
Sbjct: 403 PDSCQWPEKMRFLNLSSTGIR--VVKT--CIPQTLEVLDVSNNNLD 444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.0 bits (138), Expect = 3e-10
 Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 2/134 (1%)

Query: 42  KIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAEL 101
            IPS L+    ++++ LS +  +     ++     L  L L+ +++     +   +L  L
Sbjct: 19  SIPSGLTA--AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL 76

Query: 102 EMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
           E L L +N L+    S    LSSL  L+L  N      + SL  N ++LQTL +   +  
Sbjct: 77  EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF 136

Query: 162 GPIPSFILCKFSLL 175
             I        + L
Sbjct: 137 SEIRRIDFAGLTSL 150

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.1 bits (133), Expect = 1e-09
 Identities = 37/171 (21%), Positives = 61/171 (35%), Gaps = 15/171 (8%)

Query: 1   MSSLLSIRFTNNTLFGELPPN--FCNHLSNLESLFLKNNMFH--GKIPSTLSNCKRLRNI 56
           + SL  +  + N +  E   N        +L++L L  N      K    L   K L ++
Sbjct: 333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSL 392

Query: 57  SLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIP 116
            +S + F   +P       K+  L L    ++  +   +     LE+L + NN L  +  
Sbjct: 393 DISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLD-SFS 447

Query: 117 SSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSF 167
                L  L  L +S N L    +P        L  + +S NQL       
Sbjct: 448 L---FLPRLQELYISRNKLK--TLPDA-SLFPVLLVMKISRNQLKSVPDGI 492

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 30/147 (20%), Positives = 52/147 (35%), Gaps = 8/147 (5%)

Query: 17  ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTK 76
            L     N L  L    L+ +           +C        +  +              
Sbjct: 234 VLTDESFNELLKLLRYILELSEVE------FDDCTLNGLGDFNPSESDVVSELGKVETVT 287

Query: 77  LIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136
           + RL++    L  ++      L +++ + ++N+ +     S   +L SL  LDLS N + 
Sbjct: 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV 347

Query: 137 GGII--PSLLGNQSSLQTLYLSYNQLS 161
              +   +  G   SLQTL LS N L 
Sbjct: 348 EEYLKNSACKGAWPSLQTLVLSQNHLR 374

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.5 bits (121), Expect = 6e-08
 Identities = 24/174 (13%), Positives = 59/174 (33%), Gaps = 12/174 (6%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +++L ++R  N   F E+       L++L  L +K          +L + + + +++L L
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTR------- 113
            + +  +      ++ +  L LR   L       L        +       +        
Sbjct: 182 SESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241

Query: 114 ---AIPSSIFNLSSLSNLDLSVNNLT--GGIIPSLLGNQSSLQTLYLSYNQLSG 162
               +   I  LS +   D ++N L         ++     ++T+ +    +  
Sbjct: 242 ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQ 295

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 25/187 (13%), Positives = 63/187 (33%), Gaps = 8/187 (4%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIP-STLSNCKRLRNISLS 59
           +SSL  +    N        +   +L+NL++L + N     +I     +    L  + + 
Sbjct: 97  LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK 156

Query: 60  LDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTR------ 113
                    + + ++  +  L L  ++    +      L+ +  L L++  L R      
Sbjct: 157 ALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPL 216

Query: 114 AIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKFS 173
            +      +  L+     + + +   +  LL     L  +      L+G +  F   +  
Sbjct: 217 PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG-LGDFNPSESD 275

Query: 174 LLDNIRF 180
           ++  +  
Sbjct: 276 VVSELGK 282

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 11/135 (8%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           + +L S+  + NT    +P +       +  L L +              + L   + +L
Sbjct: 386 LKNLTSLDISRNTF-HPMPDSCQW-PEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNL 443

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           D FS         + +L  LY+  N+L+  +P+       L ++ +  N L         
Sbjct: 444 DSFSL-------FLPRLQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFD 494

Query: 121 NLSSLSNLDLSVNNL 135
            L+SL  + L  N  
Sbjct: 495 RLTSLQKIWLHTNPW 509

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 63.0 bits (153), Expect = 3e-12
 Identities = 35/160 (21%), Positives = 63/160 (39%), Gaps = 6/160 (3%)

Query: 5   LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFS 64
           LSI    + +FG          SN+       +          S      ++  S +  +
Sbjct: 278 LSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT 337

Query: 65  GTIPKEIGNVTKLIRLYLRGNQLQ--GEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-N 121
            T+ +  G++T+L  L L+ NQL+   +I E    +  L+ L +  N ++          
Sbjct: 338 DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW 397

Query: 122 LSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
             SL +L++S N LT  I   L      ++ L L  N++ 
Sbjct: 398 TKSLLSLNMSSNILTDTIFRCLPPR---IKVLDLHSNKIK 434

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 60.3 bits (146), Expect = 2e-11
 Identities = 36/181 (19%), Positives = 64/181 (35%), Gaps = 6/181 (3%)

Query: 2   SSLLSIRFTNNTLFG----ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNIS 57
           +++     +N  L G             L  L    + +++F             +   +
Sbjct: 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKN 306

Query: 58  LSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTR--AI 115
            ++             ++  + L    N L   + E  G+L ELE L LQ N L     I
Sbjct: 307 FTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKI 366

Query: 116 PSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKFSLL 175
                 + SL  LD+S N+++            SL +L +S N L+  I   +  +  +L
Sbjct: 367 AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVL 426

Query: 176 D 176
           D
Sbjct: 427 D 427

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 58.7 bits (142), Expect = 9e-11
 Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 8/163 (4%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFH--GKIPSTLSNCKRLRNISL 58
           +S  L + F+NN L  +     C HL+ LE+L L+ N      KI    +  K L+ + +
Sbjct: 323 ISPFLHLDFSNNLL-TDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI 381

Query: 59  SLDDFSGTIPKEI-GNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPS 117
           S +  S    K        L+ L +  N L   I   L     +++L L +N +  +IP 
Sbjct: 382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPK 438

Query: 118 SIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQL 160
            +  L +L  L+++ N L   +   +    +SLQ ++L  N  
Sbjct: 439 QVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.6 bits (126), Expect = 1e-08
 Identities = 30/101 (29%), Positives = 41/101 (40%), Gaps = 3/101 (2%)

Query: 68  PKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSN 127
             +I +++KL  L +  N++Q           ELE L L +N L   I        +L +
Sbjct: 38  TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKH 94

Query: 128 LDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFI 168
           LDLS N      I    GN S L+ L LS   L       I
Sbjct: 95  LDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPI 135

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 6/95 (6%)

Query: 67  IPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLS 126
           +PK++   T    L +  N +      ++ +L++L +L + +N +     S       L 
Sbjct: 15  VPKDLSQKTT--ILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELE 72

Query: 127 NLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
            LDLS N L             +L+ L LS+N   
Sbjct: 73  YLDLSHNKLVKISCHPT----VNLKHLDLSFNAFD 103

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.5 bits (100), Expect = 3e-05
 Identities = 27/146 (18%), Positives = 45/146 (30%), Gaps = 5/146 (3%)

Query: 17  ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTK 76
            L  +       LE L L +N           N K L     + D     I KE GN+++
Sbjct: 59  YLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDAL--PICKEFGNMSQ 116

Query: 77  LIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136
           L  L L    L+      + +L   ++L +               L   +   L +   T
Sbjct: 117 LKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPE--GLQDFNTESLHIVFPT 174

Query: 137 GGIIPSLLGNQSSLQTLYLSYNQLSG 162
                 +L + S      L  + +  
Sbjct: 175 NKEFHFIL-DVSVKTVANLELSNIKC 199

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.2 bits (99), Expect = 4e-05
 Identities = 28/143 (19%), Positives = 42/143 (29%), Gaps = 4/143 (2%)

Query: 27  SNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQ 86
                L +  N       S + +  +LR + +S +              +L  L L  N+
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 87  LQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNNLTGGIIPSLLG 145
           L         NL  L    L  N          F N+S L  L LS  +L    +  +  
Sbjct: 81  LVKISCHPTVNLKHL---DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137

Query: 146 NQSSLQTLYLSYNQLSGPIPSFI 168
              S   L L         P  +
Sbjct: 138 LNISKVLLVLGETYGEKEDPEGL 160

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 62.6 bits (152), Expect = 3e-12
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 5/91 (5%)

Query: 73  NVTKLIRLYLRGNQLQGEIPEE-LGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDL 130
            +T L  L L  N L   I  E    +  L  L L +N L   +   +F +L +L  L L
Sbjct: 62  RLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHT-LDEFLFSDLQALEVLLL 119

Query: 131 SVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
             N++   +  +   + + LQ LYLS NQ+S
Sbjct: 120 YNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS 149

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 59.1 bits (143), Expect = 6e-11
 Identities = 38/153 (24%), Positives = 62/153 (40%), Gaps = 13/153 (8%)

Query: 17  ELPPNFC-NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEI-GNV 74
            L   +    L+NL SL L +N  +            LR + LS +    T+ + +  ++
Sbjct: 53  RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDL 111

Query: 75  TKLIRLYLRGNQLQGEIPEE-LGNLAELEMLWLQNNFLTRAIPSSIF----NLSSLSNLD 129
             L  L L  N +   +      ++A+L+ L+L  N ++R  P  +      L  L  LD
Sbjct: 112 QALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLD 169

Query: 130 LSVNNLTGGIIPSLLGNQSSL--QTLYLSYNQL 160
           LS N L   +  + L    +     LYL  N L
Sbjct: 170 LSSNKLK-KLPLTDLQKLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 53.7 bits (129), Expect = 4e-09
 Identities = 30/139 (21%), Positives = 59/139 (42%), Gaps = 8/139 (5%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +++L S+  ++N L   +       + NL  L L +N  H       S+ + L  + L  
Sbjct: 63  LTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYN 121

Query: 61  DDFSGTIPKEI-GNVTKLIRLYLRGNQLQGEIPEE----LGNLAELEMLWLQNNFLTRAI 115
           +     + +    ++ +L +LYL  NQ+    P E       L +L +L L +N L +  
Sbjct: 122 NHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179

Query: 116 PSSIFNLSSLSNLDLSVNN 134
            + +  L +     L ++N
Sbjct: 180 LTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 43.7 bits (103), Expect = 9e-06
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 99  AELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSY 157
           +   +L L +N L+R         L++L +L LS N+L   I         +L+ L LS 
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSS 97

Query: 158 NQLS 161
           N L 
Sbjct: 98  NHLH 101

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 61.9 bits (151), Expect = 4e-12
 Identities = 39/144 (27%), Positives = 60/144 (41%), Gaps = 7/144 (4%)

Query: 18  LPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEI-GNVTK 76
           LP      L NLE+L++ +N               L  + L  +    ++P  +  ++TK
Sbjct: 76  LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTK 134

Query: 77  LIRLYLRGNQLQGEIPEEL-GNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNN 134
           L  L L  N+LQ  +P+ +   L  L+ L L NN L   +P   F  L+ L  L L  N 
Sbjct: 135 LTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQ 192

Query: 135 LTGGIIPSLLGNQSSLQTLYLSYN 158
           L   +      +   L+ L L  N
Sbjct: 193 LK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 59.2 bits (144), Expect = 3e-11
 Identities = 39/154 (25%), Positives = 63/154 (40%), Gaps = 7/154 (4%)

Query: 11  NNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKE 70
            +     LP    + L+ L  L+L +N             K L  + ++ +     +P  
Sbjct: 45  QSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ-ALPIG 103

Query: 71  I-GNVTKLIRLYLRGNQLQGEIPEEL-GNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSN 127
           +   +  L  L L  NQL+  +P  +  +L +L  L L  N L  ++P  +F  L+SL  
Sbjct: 104 VFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKE 161

Query: 128 LDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
           L L  N L   +        + L+TL L  NQL 
Sbjct: 162 LRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK 194

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 53.4 bits (129), Expect = 3e-09
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 9/87 (10%)

Query: 79  RLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFN-LSSLSNLDLSVNNLT- 136
           +L L+ N+L     +    L +L +L+L +N L   +P+ IF  L +L  L ++ N L  
Sbjct: 41  KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQA 99

Query: 137 --GGIIPSLLGNQSSLQTLYLSYNQLS 161
              G+   L     +L  L L  NQL 
Sbjct: 100 LPIGVFDQL----VNLAELRLDRNQLK 122

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 3/64 (4%)

Query: 99  AELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSY 157
           A+ + L LQ+N L+  +PS  F  L+ L  L L+ N L   +   +     +L+TL+++ 
Sbjct: 37  ADTKKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTD 94

Query: 158 NQLS 161
           N+L 
Sbjct: 95  NKLQ 98

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 62.6 bits (152), Expect = 4e-12
 Identities = 44/178 (24%), Positives = 68/178 (38%), Gaps = 7/178 (3%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +++   + F N+T+  +LP    +    +E L L +           +    ++ + +  
Sbjct: 50  LNNQKIVTFKNSTM-RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 108

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           +      P    NV  L  L L  N L         N  +L  L + NN L R I    F
Sbjct: 109 NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTF 167

Query: 121 -NLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKFSLLDN 177
              +SL NL LS N LT  +  SL+    SL    +SYN LS       + +     N
Sbjct: 168 QATTSLQNLQLSSNRLT-HVDLSLI---PSLFHANVSYNLLSTLAIPIAVEELDASHN 221

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 62.3 bits (151), Expect = 5e-12
 Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 3/138 (2%)

Query: 25  HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84
            L+N + +  KN+       + L + +++  ++L+                 + +LY+  
Sbjct: 49  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 108

Query: 85  NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNNLTGGIIPSL 143
           N ++   P    N+  L +L L+ N L+  +P  IF N   L+ L +S NNL   I    
Sbjct: 109 NAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLE-RIEDDT 166

Query: 144 LGNQSSLQTLYLSYNQLS 161
               +SLQ L LS N+L+
Sbjct: 167 FQATTSLQNLQLSSNRLT 184

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 59.2 bits (143), Expect = 5e-11
 Identities = 31/136 (22%), Positives = 55/136 (40%), Gaps = 8/136 (5%)

Query: 26  LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGN 85
              L  L L++N       + L N   L  + LS ++    +      + +L RLY+  N
Sbjct: 231 NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 288

Query: 86  QLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLG 145
           +L   +      +  L++L L +N L   +  +      L NL L  N++    +   L 
Sbjct: 289 RLV-ALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIV--TLK--LS 342

Query: 146 NQSSLQTLYLSYNQLS 161
              +L+ L LS+N   
Sbjct: 343 THHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 55.3 bits (133), Expect = 1e-09
 Identities = 18/119 (15%), Positives = 41/119 (34%), Gaps = 1/119 (0%)

Query: 43  IPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELE 102
           I S L       ++ + +         E   +     +  + + ++      L +  ++E
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 78

Query: 103 MLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
           +L L +  +      +     ++  L +  N +   + P +  N   L  L L  N LS
Sbjct: 79  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS 136

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 54.2 bits (130), Expect = 3e-09
 Identities = 28/138 (20%), Positives = 51/138 (36%), Gaps = 12/138 (8%)

Query: 24  NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR 83
           + + +L    +  N+      STL+    +  +  S +  +  +   +    +L  L L+
Sbjct: 189 SLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQ 240

Query: 84  GNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSL 143
            N L       L N   L  + L  N L + +      +  L  L +S N L    +   
Sbjct: 241 HNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV--ALNLY 296

Query: 144 LGNQSSLQTLYLSYNQLS 161
                +L+ L LS+N L 
Sbjct: 297 GQPIPTLKVLDLSHNHLL 314

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.8 bits (129), Expect = 4e-09
 Identities = 24/139 (17%), Positives = 53/139 (38%), Gaps = 6/139 (4%)

Query: 24  NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR 83
               ++       +++ G    TL+N    + ++             + +  ++  L L 
Sbjct: 27  CVFYDVHIDMQTQDVYFGFEDITLNN---QKIVTFKNSTMRKLPAALLDSFRQVELLNLN 83

Query: 84  GNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNNLTGGIIPS 142
             Q++            ++ L++  N +   +P  +F N+  L+ L L  N+L+  +   
Sbjct: 84  DLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRG 141

Query: 143 LLGNQSSLQTLYLSYNQLS 161
           +  N   L TL +S N L 
Sbjct: 142 IFHNTPKLTTLSMSNNNLE 160

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.4 bits (128), Expect = 5e-09
 Identities = 25/134 (18%), Positives = 45/134 (33%), Gaps = 5/134 (3%)

Query: 25  HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84
           +   L  + L  N     +       +RL  + +S +     +      +  L  L L  
Sbjct: 252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSH 310

Query: 85  NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLL 144
           N L   +         LE L+L +N +   +  S     +L NL LS N+     + +L 
Sbjct: 311 NHLL-HVERNQPQFDRLENLYLDHNSIVT-LKLSTH--HTLKNLTLSHNDWDCNSLRALF 366

Query: 145 GNQSSLQTLYLSYN 158
            N +         +
Sbjct: 367 RNVARPAVDDADQH 380

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.0 bits (101), Expect = 2e-05
 Identities = 12/110 (10%), Positives = 36/110 (32%), Gaps = 1/110 (0%)

Query: 52  RLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFL 111
           + R            I   +        +++           E   L   +++  +N+ +
Sbjct: 4   QQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM 63

Query: 112 TRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
            +   + + +   +  L+L+   +   I         ++Q LY+ +N + 
Sbjct: 64  RKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR 112

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 62.1 bits (151), Expect = 5e-12
 Identities = 35/189 (18%), Positives = 58/189 (30%), Gaps = 14/189 (7%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +  L  ++    T    +  N    LS+L  L L  N F        +    L  ++L+ 
Sbjct: 53  LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQ 112

Query: 61  DDF-SGTIPKEI-GNVTKLIRLYLRGNQLQGEIPEEL-GNLAELEMLWLQNNFLTRAIPS 117
            +     +       +T L  L LR N ++   P     N+    +L L  N +  +I  
Sbjct: 113 CNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-SICE 171

Query: 118 SIF---NLSSLSNLDLSVNNLT-------GGIIPSLLGNQSSLQTLYLSYNQLSGPIPSF 167
                      + L LS   L        G          +S+ TL LS N     +   
Sbjct: 172 EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKR 231

Query: 168 ILCKFSLLD 176
                +   
Sbjct: 232 FFDAIAGTK 240

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 60.1 bits (146), Expect = 2e-11
 Identities = 35/159 (22%), Positives = 57/159 (35%), Gaps = 11/159 (6%)

Query: 11  NNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPS-TLSNCKRLRNISLSLDDFSGTIPK 69
           +     EL     + L +L+ L ++       I + T      L  + L  + F   +  
Sbjct: 38  SLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLET 96

Query: 70  EI-GNVTKLIRLYLRGNQLQG-EIPEEL-GNLAELEMLWLQNNFLTRAIPSSIF-NLSSL 125
                +  L  L L    L G  +       L  LEML L++N + +  P+S F N+   
Sbjct: 97  GAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRF 156

Query: 126 SNLDLSVNNLT---GGIIPSLLGNQSSLQTLYLSYNQLS 161
             LDL+ N +       + +  G       L LS   L 
Sbjct: 157 HVLDLTFNKVKSICEEDLLNFQGKH--FTLLRLSSITLQ 193

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 58.2 bits (141), Expect = 1e-10
 Identities = 40/177 (22%), Positives = 68/177 (38%), Gaps = 19/177 (10%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSN---------CK 51
            +S+ ++  + N     +   F + ++  +   L  +  +    S              K
Sbjct: 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK 270

Query: 52  RLRNISLSLDDFSG----TIPKEI-GNVTKLIRLYLRGNQLQGEIPEE-LGNLAELEMLW 105
            L    +   D S      + K +  + T L +L L  N++  +I +     L  L  L 
Sbjct: 271 GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLN 329

Query: 106 LQNNFLTRAIPSSIF-NLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
           L  NFL  +I S +F NL  L  LDLS N++   +         +L+ L L  NQL 
Sbjct: 330 LSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALDTNQLK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 55.5 bits (134), Expect = 1e-09
 Identities = 36/160 (22%), Positives = 63/160 (39%), Gaps = 7/160 (4%)

Query: 5   LSIRFTNNTLFGELPPNFCNHL--SNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDD 62
                  +T F +        L  S +++  L  +     + S  S+   L  ++L+ ++
Sbjct: 251 NMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE 310

Query: 63  FSGTIPKEI-GNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF- 120
            +  I       +T L++L L  N L         NL +LE+L L  N +  A+    F 
Sbjct: 311 IN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFL 368

Query: 121 NLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQL 160
            L +L  L L  N L   +   +    +SLQ ++L  N  
Sbjct: 369 GLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 7/138 (5%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
            S + +   + + +F  L  +  +H ++LE L L  N  +    +       L  ++LS 
Sbjct: 274 ASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLS- 331

Query: 61  DDFSGTIPKEI-GNVTKLIRLYLRGNQLQGEIPEEL-GNLAELEMLWLQNNFLTRAIPSS 118
            +F G+I   +  N+ KL  L L  N ++  + ++    L  L+ L L  N L   +P  
Sbjct: 332 QNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKS-VPDG 389

Query: 119 IF-NLSSLSNLDLSVNNL 135
           IF  L+SL  + L  N  
Sbjct: 390 IFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 52.1 bits (125), Expect = 1e-08
 Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 3/99 (3%)

Query: 79  RLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNNLTG 137
            + L  N +          L +L+ L ++       I ++ F  LSSL  L L  N    
Sbjct: 34  YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL- 92

Query: 138 GIIPSLLGNQSSLQTLYLSYNQL-SGPIPSFILCKFSLL 175
            +        ++L+ L L+   L    +        + L
Sbjct: 93  QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSL 131

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 16/63 (25%), Positives = 22/63 (34%)

Query: 99  AELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYN 158
           A +  + L  N +     +S   L  L  L +        I  +     SSL  L L YN
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 159 QLS 161
           Q  
Sbjct: 90  QFL 92

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 61.7 bits (149), Expect = 8e-12
 Identities = 44/143 (30%), Positives = 66/143 (46%), Gaps = 21/143 (14%)

Query: 24  NHLSNLESLFLKNNMFHGKIP--STLSNCKRLRNISLS---LDDFSGTIPKEIGNVTKLI 78
            +L N+  LFL  N    K+     L+N K L  + L    + D S      + ++ KL 
Sbjct: 62  QYLPNVTKLFLNGN----KLTDIKPLTNLKNLGWLFLDENKIKDLSS-----LKDLKKLK 112

Query: 79  RLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGG 138
            L L  N +  +I   L +L +LE L+L NN +T    + +  L+ L  L L  N ++  
Sbjct: 113 SLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD- 167

Query: 139 IIPSLLGNQSSLQTLYLSYNQLS 161
            I  L    + LQ LYLS N +S
Sbjct: 168 -IVPL-AGLTKLQNLYLSKNHIS 188

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 59.0 bits (142), Expect = 8e-11
 Identities = 39/161 (24%), Positives = 72/161 (44%), Gaps = 22/161 (13%)

Query: 24  NHLSNLESLFLKNNMFHGKIP--STLSNCKRLRNISLS---LDDFSGTIPKEIGNVTKLI 78
            +L NL  LFL  N    KI   S+L + K+L+++SL    + D +G     + ++ +L 
Sbjct: 84  TNLKNLGWLFLDEN----KIKDLSSLKDLKKLKSLSLEHNGISDING-----LVHLPQLE 134

Query: 79  RLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGG 138
            LYL  N++       L  L +L+ L L++N ++      +  L+ L NL LS N+++  
Sbjct: 135 SLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLSKNHIS-- 188

Query: 139 IIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKFSLLDNIR 179
                L    +L  L L   +      +       + + ++
Sbjct: 189 -DLRALAGLKNLDVLELFSQECLNKPINH-QSNLVVPNTVK 227

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 48.9 bits (116), Expect = 2e-07
 Identities = 19/117 (16%), Positives = 43/117 (36%), Gaps = 9/117 (7%)

Query: 45  STLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEML 104
                       +L     +  +      +  + ++    + ++  + + +  L  +  L
Sbjct: 15  FPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKL 70

Query: 105 WLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
           +L  N LT      + NL +L  L L  N +   +    L +   L++L L +N +S
Sbjct: 71  FLNGNKLTDI--KPLTNLKNLGWLFLDENKIK-DLSS--LKDLKKLKSLSLEHNGIS 122

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.2 bits (101), Expect = 2e-05
 Identities = 21/127 (16%), Positives = 44/127 (34%), Gaps = 12/127 (9%)

Query: 24  NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLS---LDDFSGTIPKEIGNVTKLIRL 80
           + L+ L++L L++N     I   L+   +L+N+ LS   + D        +  +  L  L
Sbjct: 150 SRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHISDLRA-----LAGLKNLDVL 202

Query: 81  YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGII 140
            L   +   +      NL     +   +   +   P  I +       ++  +       
Sbjct: 203 ELFSQECLNKPINHQSNLVVPNTVKNTDG--SLVTPEIISDDGDYEKPNVKWHLPEFTNE 260

Query: 141 PSLLGNQ 147
            S +  Q
Sbjct: 261 VSFIFYQ 267

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 59.3 bits (144), Expect = 2e-11
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 5/91 (5%)

Query: 73  NVTKLIRLYLRGNQLQGEIPEEL-GNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDL 130
              KL R+ L  NQ+  E+  +    L  L  L L  N +T  +P S+F  L SL  L L
Sbjct: 54  PYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLL 111

Query: 131 SVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
           + N +   +      +  +L  L L  N+L 
Sbjct: 112 NANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 53.5 bits (129), Expect = 2e-09
 Identities = 32/143 (22%), Positives = 53/143 (37%), Gaps = 27/143 (18%)

Query: 17  ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTK 76
            +PP   +    L  + L NN              ++    L+ D F G        +  
Sbjct: 46  VIPPGAFSPYKKLRRIDLSNN--------------QIS--ELAPDAFQG--------LRS 81

Query: 77  LIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNNL 135
           L  L L GN++          L  L++L L  N +   +    F +L +L+ L L  N L
Sbjct: 82  LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKL 140

Query: 136 TGGIIPSLLGNQSSLQTLYLSYN 158
              I         ++QT++L+ N
Sbjct: 141 Q-TIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.2 bits (97), Expect = 6e-05
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 99  AELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSY 157
             +  + L+ N +   IP   F     L  +DLS N ++  + P       SL +L L  
Sbjct: 32  ETITEIRLEQNTIKV-IPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYG 89

Query: 158 NQLS 161
           N+++
Sbjct: 90  NKIT 93

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 59.5 bits (144), Expect = 3e-11
 Identities = 35/173 (20%), Positives = 56/173 (32%), Gaps = 12/173 (6%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCN-HLSNLESLFLKNNMFHG--KIPSTLSNC--KRLRN 55
           +S L  +   N  + G  PP        +L  L L+N  +       + L       L+ 
Sbjct: 94  ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKV 153

Query: 56  ISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEI-------PEELGNLAELEMLWLQN 108
           +S++         +++     L  L L  N   GE        P +   L  L +     
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213

Query: 109 NFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
              +    +       L  LDLS N+L            S L +L LS+  L 
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 56.8 bits (137), Expect = 3e-10
 Identities = 32/170 (18%), Positives = 49/170 (28%), Gaps = 15/170 (8%)

Query: 2   SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNN-------MFHGKIPSTLSNCKRLR 54
             L  +                     L +L L +N       +     P      + L 
Sbjct: 149 PGLKVLSIAQAHSL-NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLA 207

Query: 55  NISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEEL-GNLAELEMLWLQNNFLTR 113
             +  ++  SG          +L  L L  N L+           ++L  L L    L +
Sbjct: 208 LRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ 267

Query: 114 AIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGP 163
            +P  +   + LS LDLS N L     P  L     +  L L  N     
Sbjct: 268 -VPKGLP--AKLSVLDLSYNRLDRNPSPDEL---PQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 22/167 (13%), Positives = 44/167 (26%), Gaps = 8/167 (4%)

Query: 22  FCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPK---EIGNVTKLI 78
           +    S    L   +        + +     L+ +++        I      +  ++ L 
Sbjct: 39  YGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98

Query: 79  RLYLRGNQLQGEIPEELGNLAELEMLWLQ-NNFLTRAIPSSIFNLSSLSNLDLSV----N 133
            L L   ++ G  P  L      ++  L   N       + +  L       L V     
Sbjct: 99  ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ 158

Query: 134 NLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKFSLLDNIRF 180
             +       +    +L TL LS N   G               ++ 
Sbjct: 159 AHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQV 205

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 59.4 bits (144), Expect = 4e-11
 Identities = 31/149 (20%), Positives = 60/149 (40%), Gaps = 7/149 (4%)

Query: 17  ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEI-GNVT 75
            +  +      NL++L L +N  +     + S+   L ++ LS +  S  +       ++
Sbjct: 66  YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLS 124

Query: 76  KLIRLYLRGNQLQGEIPEE--LGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSV 132
            L  L L GN  +  + E     +L +L++L + N      I    F  L+ L  L++  
Sbjct: 125 SLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183

Query: 133 NNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
           ++L     P  L +  ++  L L   Q  
Sbjct: 184 SDLQ-SYEPKSLKSIQNVSHLILHMKQHI 211

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 57.4 bits (139), Expect = 2e-10
 Identities = 38/187 (20%), Positives = 68/187 (36%), Gaps = 12/187 (6%)

Query: 2   SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPS-TLSNCKRLRNISLSL 60
           SSL  +    N        +  +HL+ L+ L + N     KI     +    L  + +  
Sbjct: 124 SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLT----RAIP 116
            D     PK + ++  +  L L   Q    +   +   + +E L L++  L       + 
Sbjct: 184 SDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS 243

Query: 117 SSIFN----LSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKF 172
           +   N      +  N+ ++  +L    +  LL   S L  L  S NQL   +P  I  + 
Sbjct: 244 TGETNSLIKKFTFRNVKITDESLFQ--VMKLLNQISGLLELEFSRNQLKS-VPDGIFDRL 300

Query: 173 SLLDNIR 179
           + L  I 
Sbjct: 301 TSLQKIW 307

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 57.4 bits (139), Expect = 2e-10
 Identities = 33/176 (18%), Positives = 64/176 (36%), Gaps = 12/176 (6%)

Query: 2   SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIP-STLSNCKRLRNISLSL 60
            SL  +  + N L   L  ++   LS+L  L L  N +      S  S+  +L+ + +  
Sbjct: 100 GSLEHLDLSYNYL-SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN 158

Query: 61  DDFSGTIPKEI-GNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSI 119
            D    I ++    +T L  L +  + LQ   P+ L ++  +  L L        +    
Sbjct: 159 MDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIF 217

Query: 120 F-NLSSLSNLDLSVNNLTGGIIPSL-------LGNQSSLQTLYLSYNQLSGPIPSF 167
               SS+  L+L   +L       L       L  + + + + ++   L   +   
Sbjct: 218 VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLL 273

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 52.8 bits (127), Expect = 9e-09
 Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 3/88 (3%)

Query: 75  TKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVN 133
             +  L L  N++      +L     L+ L L +N +   I    F +L SL +LDLS N
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYN 110

Query: 134 NLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
            L+  +  S     SSL  L L  N   
Sbjct: 111 YLS-NLSSSWFKPLSSLTFLNLLGNPYK 137

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 47.8 bits (114), Expect = 4e-07
 Identities = 23/145 (15%), Positives = 45/145 (31%), Gaps = 12/145 (8%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           ++ L  +    + L     P     + N+  L L        +   +     +  + L  
Sbjct: 173 LTFLEELEIDASDL-QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRD 231

Query: 61  DDFSGTIPKEI--------GNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLT 112
            D       E+                + +    L  ++ + L  ++ L  L    N L 
Sbjct: 232 TDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK 290

Query: 113 RAIPSSIF-NLSSLSNLDLSVNNLT 136
            ++P  IF  L+SL  + L  N   
Sbjct: 291 -SVPDGIFDRLTSLQKIWLHTNPWD 314

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 58.0 bits (140), Expect = 1e-10
 Identities = 39/161 (24%), Positives = 70/161 (43%), Gaps = 8/161 (4%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFH--GKIPSTLSNCKRLRNISL 58
            SS   + FT N    +     C+ L  L++L L+ N      K+     N   L  + +
Sbjct: 352 PSSFTFLNFTQNVF-TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDV 410

Query: 59  SLDDF-SGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPS 117
           SL+   S    +       ++ L L  N L G +   L    ++++L L NN +  +IP 
Sbjct: 411 SLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM-SIPK 467

Query: 118 SIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYN 158
            + +L +L  L+++ N L   +   +    +SLQ ++L  N
Sbjct: 468 DVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 56.8 bits (137), Expect = 4e-10
 Identities = 29/160 (18%), Positives = 59/160 (36%), Gaps = 6/160 (3%)

Query: 5   LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFS 64
           L I    N +F        +  + +    L  +           +      ++ + + F+
Sbjct: 307 LMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT 366

Query: 65  GTIPKEIGNVTKLIRLYLRGNQLQ--GEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNL 122
            ++ +    + +L  L L+ N L+   ++     N++ LE L +  N L           
Sbjct: 367 DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW 426

Query: 123 -SSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
             S+  L+LS N LTG +   L      ++ L L  N++ 
Sbjct: 427 AESILVLNLSSNMLTGSVFRCLPPK---VKVLDLHNNRIM 463

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 55.3 bits (133), Expect = 1e-09
 Identities = 36/168 (21%), Positives = 56/168 (33%), Gaps = 8/168 (4%)

Query: 1   MSSLLSIRFTNNTLFG----ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNI 56
              +  +   N T+      E        L +L    +KN +F     +  S    +   
Sbjct: 275 PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIK 334

Query: 57  SLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIP 116
            LS+ D          + +    L    N     + +    L  L+ L LQ N L     
Sbjct: 335 MLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFF 393

Query: 117 SSIF---NLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
                  N+SSL  LD+S+N+L             S+  L LS N L+
Sbjct: 394 KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT 441

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 50.6 bits (121), Expect = 5e-08
 Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 5/95 (5%)

Query: 68  PKEIGNVTKLIRLYLRGNQLQGEIPEEL-GNLAELEMLWLQNNFLTRAIPSSIFNLSSLS 126
             +I  +++L  L L  N+++  +   +     +LE L + +N L   I      ++SL 
Sbjct: 69  MPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLR 124

Query: 127 NLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
           +LDLS N+     +    GN + L  L LS  +  
Sbjct: 125 HLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 46.8 bits (111), Expect = 9e-07
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 6/88 (6%)

Query: 75  TKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVN 133
            +   L L  N +      ++  L+EL +L L +N +  ++   +F     L  LD+S N
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHN 110

Query: 134 NLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
            L    I       +SL+ L LS+N   
Sbjct: 111 RLQN--ISC--CPMASLRHLDLSFNDFD 134

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 21/180 (11%), Positives = 48/180 (26%), Gaps = 4/180 (2%)

Query: 3   SLLSIRFTNNTLFGELPPNFCNHLS--NLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +L  I  T           +   +   N+ +L +   +   +   + +  K L    +  
Sbjct: 255 TLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKN 314

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
             F  +         ++    L  +           + +    L    N  T ++     
Sbjct: 315 QVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCS 374

Query: 121 NLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKFSLLDNIRF 180
            L  L  L L  N L       +     ++ +L      L+           +  ++I  
Sbjct: 375 TLKRLQTLILQRNGLK--NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILV 432

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.6 bits (100), Expect = 3e-05
 Identities = 35/161 (21%), Positives = 55/161 (34%), Gaps = 5/161 (3%)

Query: 17  ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTK 76
           EL     + LS L  L L +N             + L  + +S +     I      +  
Sbjct: 66  ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NIS--CCPMAS 122

Query: 77  LIRLYLRGNQLQG-EIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLS-SLSNLDLSVNN 134
           L  L L  N      + +E GNL +L  L L      +     + +L  S   LDL   +
Sbjct: 123 LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYH 182

Query: 135 LTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKFSLL 175
           + GG   SL    +++  L    N L     +  +     L
Sbjct: 183 IKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHL 223

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 39.5 bits (92), Expect = 3e-04
 Identities = 24/104 (23%), Positives = 35/104 (33%), Gaps = 5/104 (4%)

Query: 75  TKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVN 133
             L  L +  N+LQ  I      +A L  L L  N          F NL+ L+ L LS  
Sbjct: 100 QDLEYLDVSHNRLQ-NIS--CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA 156

Query: 134 NLTGGIIPSLLGNQSSLQTLYLSYNQLS-GPIPSFILCKFSLLD 176
                 +  +     S   L L    +  G   S  +   ++L 
Sbjct: 157 KFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLH 200

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 56.8 bits (137), Expect = 3e-10
 Identities = 29/170 (17%), Positives = 54/170 (31%), Gaps = 5/170 (2%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +  L  IR         + P    +L NL+ L + N            +  +   + +  
Sbjct: 78  LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD 137

Query: 61  DDFSGTIPKEI--GNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSS 118
           +    TI +    G   + + L+L  N +Q             E+    NN L   +P+ 
Sbjct: 138 NINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEE-LPND 196

Query: 119 IF-NLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSF 167
           +F   S    LD+S   +   +    L N   L+       +    +   
Sbjct: 197 VFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLKKLPTLEKL 245

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 53.3 bits (128), Expect = 5e-09
 Identities = 30/139 (21%), Positives = 48/139 (34%), Gaps = 5/139 (3%)

Query: 27  SNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEI-GNVTKLIRLYL-RG 84
            N   L               S    L  I +S +D    I  ++  N+ KL  + + + 
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 85  NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNNLTGGIIP-S 142
           N L    PE   NL  L+ L + N  +   +P     +      LD+  N     I   S
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHKIHSLQKVLLDIQDNINIHTIERNS 148

Query: 143 LLGNQSSLQTLYLSYNQLS 161
            +G       L+L+ N + 
Sbjct: 149 FVGLSFESVILWLNKNGIQ 167

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 49.4 bits (118), Expect = 1e-07
 Identities = 36/189 (19%), Positives = 64/189 (33%), Gaps = 32/189 (16%)

Query: 2   SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPS-TLSNCKRLRNISLSL 60
            + + +RF    L   +     +   +LE + +  N     I +   SN  +L  I +  
Sbjct: 30  RNAIELRFVLTKL-RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 61  DDFSGTIPKEI-GNVTKLIRLYLRGNQLQGEIPEEL------------------------ 95
            +    I  E   N+  L  L +    ++  +P+                          
Sbjct: 89  ANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERN 147

Query: 96  ---GNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQT 152
              G   E  +LWL  N +   I +S FN + L  L+LS NN    +   +    S    
Sbjct: 148 SFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVI 206

Query: 153 LYLSYNQLS 161
           L +S  ++ 
Sbjct: 207 LDISRTRIH 215

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 6/84 (7%)

Query: 80  LYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNNLTGG 138
              + +++  EIP +L        L      L   I    F     L  +++S N++   
Sbjct: 14  FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLEV 69

Query: 139 IIPSLLGNQSSLQTLYLS-YNQLS 161
           I   +  N   L  + +   N L 
Sbjct: 70  IEADVFSNLPKLHEIRIEKANNLL 93

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 55.8 bits (135), Expect = 3e-10
 Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 3/90 (3%)

Query: 73  NVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLS 131
            + +L ++    N++           + +  + L +N L   +   +F  L SL  L L 
Sbjct: 55  KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLR 113

Query: 132 VNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
            N +T  +        SS++ L L  NQ++
Sbjct: 114 SNRITC-VGNDSFIGLSSVRLLSLYDNQIT 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.4 bits (126), Expect = 6e-09
 Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 6/98 (6%)

Query: 66  TIPKEIGNVTKLIRLYLRGNQLQGEIPE-ELGNLAELEMLWLQNNFLTRAIPSSIFN-LS 123
            IP+ I   T    L L  N+            L +L  +   NN +T  I    F   S
Sbjct: 25  KIPEHIPQYTA--ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGAS 81

Query: 124 SLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
            ++ + L+ N L   +   +     SL+TL L  N+++
Sbjct: 82  GVNEILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRIT 118

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.4 bits (121), Expect = 3e-08
 Identities = 28/134 (20%), Positives = 49/134 (36%), Gaps = 29/134 (21%)

Query: 2   SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLD 61
             L  I F+NN +  ++        S +  + L +N                   ++   
Sbjct: 57  PQLRKINFSNNKI-TDIEEGAFEGASGVNEILLTSNRLE----------------NVQHK 99

Query: 62  DFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEEL-GNLAELEMLWLQNNFLTRAIPSSIF 120
            F G        +  L  L LR N++   +  +    L+ + +L L +N +T  +    F
Sbjct: 100 MFKG--------LESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITT-VAPGAF 149

Query: 121 -NLSSLSNLDLSVN 133
             L SLS L+L  N
Sbjct: 150 DTLHSLSTLNLLAN 163

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 55.4 bits (134), Expect = 3e-10
 Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 6/96 (6%)

Query: 67  IPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSL 125
           +PK I        LYL GNQ    +P+EL N   L ++ L NN ++  + +  F N++ L
Sbjct: 25  LPKGIPRDVT--ELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQL 80

Query: 126 SNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
             L LS N L   I P       SL+ L L  N +S
Sbjct: 81  LTLILSYNRLRC-IPPRTFDGLKSLRLLSLHGNDIS 115

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 51.1 bits (123), Expect = 1e-08
 Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 9/99 (9%)

Query: 66  TIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFN-LSS 124
            +PKE+ N   L  + L  N++     +   N+ +L  L L  N L   IP   F+ L S
Sbjct: 45  LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CIPPRTFDGLKS 103

Query: 125 LSNLDLSVNNLTG---GIIPSLLGNQSSLQTLYLSYNQL 160
           L  L L  N+++    G    L    S+L  L +  N L
Sbjct: 104 LRLLSLHGNDISVVPEGAFNDL----SALSHLAIGANPL 138

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 56.2 bits (136), Expect = 7e-10
 Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 17/136 (12%)

Query: 26  LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGN 85
             +LESL    N    ++P    + K L   + +L   S   P        L  L +  N
Sbjct: 90  PPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPL-------LEYLGVSNN 141

Query: 86  QLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLG 145
           QL+ ++PE L N + L+++ + NN L + +P       SL  +    N L    +P L  
Sbjct: 142 QLE-KLPE-LQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLE--ELPEL-Q 192

Query: 146 NQSSLQTLYLSYNQLS 161
           N   L  +Y   N L 
Sbjct: 193 NLPFLTAIYADNNSLK 208

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.1 bits (128), Expect = 6e-09
 Identities = 30/164 (18%), Positives = 52/164 (31%), Gaps = 35/164 (21%)

Query: 26  LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNV----------- 74
            + L+     ++    ++P    N K       +  ++    P   G             
Sbjct: 10  NTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC 68

Query: 75  --TKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSV 132
              +   L L    L   +PE   +   LE L    N LT  +P    +L SL   + ++
Sbjct: 69  LDRQAHELELNNLGLS-SLPELPPH---LESLVASCNSLTE-LPELPQSLKSLLVDNNNL 123

Query: 133 NNLTGGIIPSL---------------LGNQSSLQTLYLSYNQLS 161
             L+  + P L               L N S L+ + +  N L 
Sbjct: 124 KALS-DLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK 166

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 34/154 (22%), Positives = 62/154 (40%), Gaps = 24/154 (15%)

Query: 20  PNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIR 79
           P   N L  L +++  NN    K+P    + + +        +       E+ N+  L  
Sbjct: 189 PELQN-LPFLTAIYADNNSLK-KLPDLPLSLESI-----VAGNNILEELPELQNLPFLTT 241

Query: 80  LYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGI 139
           +Y   N L+  +P+   +L   E L +++N+LT  +P    +L+ L   +   + L+   
Sbjct: 242 IYADNNLLK-TLPDLPPSL---EALNVRDNYLTD-LPELPQSLTFLDVSENIFSGLSELP 296

Query: 140 ------------IPSLLGNQSSLQTLYLSYNQLS 161
                       I SL     SL+ L +S N+L 
Sbjct: 297 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI 330

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.8 bits (122), Expect = 4e-08
 Identities = 35/151 (23%), Positives = 59/151 (39%), Gaps = 25/151 (16%)

Query: 24  NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR 83
           +   +LES+   NN+   +    L N   L  I    +    T+P    +   L  L +R
Sbjct: 212 DLPLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPPS---LEALNVR 265

Query: 84  GNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPS-------------SIFNLSSLSNLDL 130
            N L  ++PE   +L  L++     + L+   P+                   SL  L++
Sbjct: 266 DNYLT-DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNV 324

Query: 131 SVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
           S N L    +P+L      L+ L  S+N L+
Sbjct: 325 SNNKLI--ELPALPPR---LERLIASFNHLA 350

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 27/114 (23%), Positives = 38/114 (33%), Gaps = 19/114 (16%)

Query: 66  TIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAE-------------LEMLWLQNNFLT 112
            +P E  NV      Y   ++ +   P   G   E                L L N  L+
Sbjct: 25  EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS 84

Query: 113 RAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPS 166
             +P    +L S   L  S N+LT   +P L  +  SL     +   LS   P 
Sbjct: 85  S-LPELPPHLES---LVASCNSLT--ELPELPQSLKSLLVDNNNLKALSDLPPL 132

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.2 bits (105), Expect = 7e-06
 Identities = 31/157 (19%), Positives = 64/157 (40%), Gaps = 23/157 (14%)

Query: 21  NFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80
           + C+   +LE L + NN    ++P+       L  +  S +  +  +P+   N   L +L
Sbjct: 311 SLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVPELPQN---LKQL 362

Query: 81  YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGII 140
           ++  N L+ E P+   ++ +L M    N+ L   +P    NL  L    +  N L     
Sbjct: 363 HVEYNPLR-EFPDIPESVEDLRM----NSHLAE-VPELPQNLKQL---HVETNPLR--EF 411

Query: 141 PSLLGNQSSLQTLYLSYNQLSGPIPSFILCKFSLLDN 177
           P +  +   ++ L ++  ++      F       L++
Sbjct: 412 PDIPES---VEDLRMNSERVV-DPYEFAHETTDKLED 444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 32/136 (23%), Positives = 51/136 (37%), Gaps = 22/136 (16%)

Query: 26  LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGN 85
             NL  L   +N    +I S       L  +++S +     +P        L RL    N
Sbjct: 296 PPNLYYLNASSN----EIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFN 347

Query: 86  QLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLG 145
            L  E+PE   NL   + L ++ N L    P    ++  L       ++L    +P L  
Sbjct: 348 HLA-EVPELPQNL---KQLHVEYNPLRE-FPDIPESVEDLRMN----SHLA--EVPELPQ 396

Query: 146 NQSSLQTLYLSYNQLS 161
           N   L+ L++  N L 
Sbjct: 397 N---LKQLHVETNPLR 409

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 17/111 (15%), Positives = 41/111 (36%), Gaps = 13/111 (11%)

Query: 26  LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGN 85
             NL+ L ++ N    + P    + +      L ++     +P+   N   L +L++  N
Sbjct: 356 PQNLKQLHVEYNPLR-EFPDIPESVE-----DLRMNSHLAEVPELPQN---LKQLHVETN 406

Query: 86  QLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136
            L+ E P+   ++   E L + +  +      +      L +     ++  
Sbjct: 407 PLR-EFPDIPESV---EDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 54.7 bits (132), Expect = 9e-10
 Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 4/108 (3%)

Query: 54  RNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTR 113
           + + L  +  +   P    ++  L  LYL  NQL         +L +L +L L  N LT 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT- 101

Query: 114 AIPSSIFN-LSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQL 160
            +PS++F+ L  L  L +  N LT   +P  +   + L  L L  NQL
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLTE--LPRGIERLTHLTHLALDQNQL 147

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 49.7 bits (119), Expect = 6e-08
 Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 11/98 (11%)

Query: 67  IPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFN-LSSL 125
           +P  I    +   LYL  NQ+    P    +L  L+ L+L +N L  A+P  +F+ L+ L
Sbjct: 34  VPAGIPTNAQ--ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQL 90

Query: 126 SNLDLSVNNLTG---GIIPSLLGNQSSLQTLYLSYNQL 160
           + LDL  N LT     +   L      L+ L++  N+L
Sbjct: 91  TVLDLGTNQLTVLPSAVFDRL----VHLKELFMCCNKL 124

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 75  TKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVN 133
             L  L++  N+L  E+P  +  L  L  L L  N L ++IP   F  LSSL++  L  N
Sbjct: 112 VHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL-KSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 9/96 (9%)

Query: 18  LPPNFCNHLSNLESLFLKNNMFHGKIPS----TLSNCKRLRNISLSLDDFSGTIPKEIGN 73
           LP    + L+ L  L L  N     +PS     L + K L    +  +  +  +P+ I  
Sbjct: 79  LPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKEL---FMCCNKLT-ELPRGIER 133

Query: 74  VTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNN 109
           +T L  L L  NQL+         L+ L   +L  N
Sbjct: 134 LTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 55.1 bits (133), Expect = 1e-09
 Identities = 43/144 (29%), Positives = 60/144 (41%), Gaps = 29/144 (20%)

Query: 18  LPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKL 77
           L     + L+ L +L L NN                   SL L  F           T+L
Sbjct: 74  LSAGVFDDLTELGTLGLANNQLA----------------SLPLGVFDHL--------TQL 109

Query: 78  IRLYLRGNQLQGEIPEEL-GNLAELEMLWLQNNFLTRAIPSSIFN-LSSLSNLDLSVNNL 135
            +LYL GNQL+  +P  +   L +L+ L L  N L  +IP+  F+ L++L  L LS N L
Sbjct: 110 DKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQL 167

Query: 136 TGGIIPSLLGNQSSLQTLYLSYNQ 159
              +          LQT+ L  NQ
Sbjct: 168 Q-SVPHGAFDRLGKLQTITLFGNQ 190

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 53.5 bits (129), Expect = 3e-09
 Identities = 34/112 (30%), Positives = 47/112 (41%), Gaps = 9/112 (8%)

Query: 54  RNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTR 113
             + L     +         +TKL  L L  NQLQ        +L EL  L L NN L  
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA- 96

Query: 114 AIPSSIF-NLSSLSNLDLSVNNLTG---GIIPSLLGNQSSLQTLYLSYNQLS 161
           ++P  +F +L+ L  L L  N L     G+   L    + L+ L L+ NQL 
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRL----TKLKELRLNTNQLQ 144

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 52.4 bits (126), Expect = 7e-09
 Identities = 43/144 (29%), Positives = 67/144 (46%), Gaps = 12/144 (8%)

Query: 30  ESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEI-GNVTKLIRLYLRGNQLQ 88
           E L L++        +T     +L  ++L  +    T+   +  ++T+L  L L  NQL 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA 96

Query: 89  GEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNNLT---GGIIPSLL 144
                   +L +L+ L+L  N L  ++PS +F  L+ L  L L+ N L     G    L 
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL- 154

Query: 145 GNQSSLQTLYLSYNQL-SGPIPSF 167
              ++LQTL LS NQL S P  +F
Sbjct: 155 ---TNLQTLSLSTNQLQSVPHGAF 175

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 50.1 bits (120), Expect = 4e-08
 Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 11/99 (11%)

Query: 66  TIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFN-LSS 124
           ++P  I   T+  +L L+   L          L +L  L L  N L   + + +F+ L+ 
Sbjct: 28  SVPSGIPADTE--KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTE 84

Query: 125 LSNLDLSVNNLT---GGIIPSLLGNQSSLQTLYLSYNQL 160
           L  L L+ N L     G+   L    + L  LYL  NQL
Sbjct: 85  LGTLGLANNQLASLPLGVFDHL----TQLDKLYLGGNQL 119

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 37.8 bits (88), Expect = 8e-04
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 7/66 (10%)

Query: 99  AELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT---GGIIPSLLGNQSSLQTLYL 155
           A+ E L LQ+  L     ++   L+ L+ L+L  N L     G+   L    + L TL L
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL----TELGTLGL 90

Query: 156 SYNQLS 161
           + NQL+
Sbjct: 91  ANNQLA 96

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.1 bits (132), Expect = 1e-09
 Identities = 27/97 (27%), Positives = 35/97 (36%), Gaps = 5/97 (5%)

Query: 66  TIPKEIGNVTKLIRLYLRGNQLQGEIPEE-LGNLAELEMLWLQNNFLTRAIPSSIF-NLS 123
                +     L  LY+   Q    +    L  L EL  L +  + L R +    F    
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL-RFVAPDAFHFTP 80

Query: 124 SLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQL 160
            LS L+LS N L    +        SLQ L LS N L
Sbjct: 81  RLSRLNLSFNALE--SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.2 bits (114), Expect = 3e-07
 Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 2/73 (2%)

Query: 90  EIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNNLTGGIIPSLLGNQS 148
           +    L     L  L+++N    + +       L  L NL +  + L   + P       
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTP 80

Query: 149 SLQTLYLSYNQLS 161
            L  L LS+N L 
Sbjct: 81  RLSRLNLSFNALE 93

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.7 bits (105), Expect = 4e-06
 Identities = 25/132 (18%), Positives = 43/132 (32%), Gaps = 28/132 (21%)

Query: 6   SIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSG 65
            +R T +    +   +      NL  L+++N              + L+++   L D  G
Sbjct: 12  GLRCTRDGAL-DSLHHL-PGAENLTELYIENQ-------------QHLQHL--ELRDLRG 54

Query: 66  TIPKEIGNVTKLIRLYLRGNQLQGEIPEE-LGNLAELEMLWLQNNFLTRAIPSSIFNLSS 124
                     +L  L +  + L+  +  +       L  L L  N L   +        S
Sbjct: 55  L--------GELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLSFNALES-LSWKTVQGLS 104

Query: 125 LSNLDLSVNNLT 136
           L  L LS N L 
Sbjct: 105 LQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 38.6 bits (89), Expect = 5e-04
 Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 1/88 (1%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
             +L  +   N      L       L  L +L +  +      P       RL  ++LS 
Sbjct: 30  AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQ 88
           +    ++  +      L  L L GN L 
Sbjct: 90  NALE-SLSWKTVQGLSLQELVLSGNPLH 116

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 53.1 bits (128), Expect = 5e-09
 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 17/110 (15%)

Query: 58  LSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELG---NLAELEMLWLQNNFLTRA 114
           +  ++      + I  +  +  L L GN+L      ++     L  L  L L  N L  +
Sbjct: 46  IIANNSDIKSVQGIQYLPNVRYLALGGNKLH-----DISALKELTNLTYLILTGNQLQ-S 99

Query: 115 IPSSIFN-LSSLSNLDLSVNNLT---GGIIPSLLGNQSSLQTLYLSYNQL 160
           +P+ +F+ L++L  L L  N L     G+   L    ++L  L L++NQL
Sbjct: 100 LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKL----TNLTYLNLAHNQL 145

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 41/147 (27%), Positives = 57/147 (38%), Gaps = 23/147 (15%)

Query: 24  NHLSNLESLFLKNN------MFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKL 77
            +L N+  L L  N               L+N   L      L      +  ++   T L
Sbjct: 60  QYLPNVRYLALGGNKLHDISALKE-----LTNLTYLILTGNQLQSLPNGVFDKL---TNL 111

Query: 78  IRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNNLT 136
             L L  NQLQ         L  L  L L +N L  ++P  +F  L++L+ LDLS N L 
Sbjct: 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ 170

Query: 137 ---GGIIPSLLGNQSSLQTLYLSYNQL 160
               G+   L    + L+ L L  NQL
Sbjct: 171 SLPEGVFDKL----TQLKDLRLYQNQL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 9/89 (10%)

Query: 75  TKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFN-LSSLSNLDLSVN 133
           T L  L L  NQLQ         L  L  L L  N L  ++P  +F+ L+ L +L L  N
Sbjct: 133 TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQN 191

Query: 134 NLTG---GIIPSLLGNQSSLQTLYLSYNQ 159
            L     G+   L    +SLQ ++L  N 
Sbjct: 192 QLKSVPDGVFDRL----TSLQYIWLHDNP 216

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 52.7 bits (127), Expect = 6e-09
 Identities = 30/164 (18%), Positives = 47/164 (28%), Gaps = 27/164 (16%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +S +  I   N      + P+    L  L+ L + N                        
Sbjct: 79  LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK------------------MF 120

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEEL--GNLAELEMLWLQNNFLTRAIPSS 118
            D +      + +      L +  N     IP     G   E   L L NN  T  +   
Sbjct: 121 PDLTK-----VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGY 174

Query: 119 IFNLSSLSNLDLSVNNLTGGIIPSLL-GNQSSLQTLYLSYNQLS 161
            FN + L  + L+ N     I      G  S    L +S   ++
Sbjct: 175 AFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 27/164 (16%), Positives = 65/164 (39%), Gaps = 10/164 (6%)

Query: 2   SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPS-TLSNCKRLRNISLSL 60
            S  +++     L   +P +  ++L N+  +++  ++   ++ S +  N  ++ +I +  
Sbjct: 31  PSTQTLKLIETHL-RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 61  DDFSGTIPKEI-GNVTKLIRLYLRGNQLQGEIPEE--LGNLAELEMLWLQNNFLTRAIPS 117
                 I  +    +  L  L +    L+   P+   + +     +L + +N    +IP 
Sbjct: 90  TRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

Query: 118 SIFN--LSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQ 159
           + F    +    L L  N  T   +     N + L  +YL+ N+
Sbjct: 149 NAFQGLCNETLTLKLYNNGFT--SVQGYAFNGTKLDAVYLNKNK 190

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 1/88 (1%)

Query: 75  TKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVN 133
                L L    L+        NL  +  +++  +   + + S  F NLS ++++++   
Sbjct: 31  PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 134 NLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
                I P  L     L+ L +    L 
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNTGLK 118

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 38.1 bits (89), Expect = 6e-04
 Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 98  LAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLS 156
               + L L    L   IPS  F NL ++S + +S++     +      N S +  + + 
Sbjct: 30  PPSTQTLKLIETHLRT-IPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR 88

Query: 157 YNQ 159
             +
Sbjct: 89  NTR 91

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 51.6 bits (124), Expect = 1e-08
 Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 9/111 (8%)

Query: 54  RNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTR 113
             + L  +            +T L +LYL GN+LQ         L  L  L L  N L  
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ- 89

Query: 114 AIPSSIFN-LSSLSNLDLSVNNLT---GGIIPSLLGNQSSLQTLYLSYNQL 160
           ++P+ +F+ L+ L  L L+ N L     G+   L    + L+ L L  NQL
Sbjct: 90  SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKL----TQLKDLRLYQNQL 136

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 11/98 (11%)

Query: 67  IPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFN-LSSL 125
           +P  I   T    L L  N L+         L  L  L+L  N L  ++P+ +FN L+SL
Sbjct: 22  VPTGIPAQTT--YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSL 78

Query: 126 SNLDLSVNNLTG---GIIPSLLGNQSSLQTLYLSYNQL 160
           + L+LS N L     G+   L    + L+ L L+ NQL
Sbjct: 79  TYLNLSTNQLQSLPNGVFDKL----TQLKELALNTNQL 112

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 4/61 (6%)

Query: 75  TKLIRLYLRGNQLQGEIPEEL-GNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSV 132
           T+L  L L  NQLQ  +P+ +   L +L+ L L  N L +++P  +F  L+SL  + L  
Sbjct: 100 TQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQL-KSVPDGVFDRLTSLQYIWLHD 157

Query: 133 N 133
           N
Sbjct: 158 N 158

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 50.0 bits (120), Expect = 3e-08
 Identities = 31/100 (31%), Positives = 42/100 (42%), Gaps = 12/100 (12%)

Query: 67  IPKEIGNVTKLIRLYLRGNQLQGEIPEEL-GNLAELEMLWLQNNFLTRAIPSSIF-NLSS 124
           IP++I   T    L L  N+L     + L G L  L  L L+ N LT  I  + F   S 
Sbjct: 23  IPRDIPLHTT--ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASH 79

Query: 125 LSNLDLSVNNLT---GGIIPSLLGNQSSLQTLYLSYNQLS 161
           +  L L  N +      +   L      L+TL L  NQ+S
Sbjct: 80  IQELQLGENKIKEISNKMFLGL----HQLKTLNLYDNQIS 115

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.8 bits (104), Expect = 4e-06
 Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 4/61 (6%)

Query: 75  TKLIRLYLRGNQLQGEIPEEL-GNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSV 132
           + +  L L  N+++ EI  ++   L +L+ L L +N ++  +    F +L+SL++L+L+ 
Sbjct: 78  SHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLAS 135

Query: 133 N 133
           N
Sbjct: 136 N 136

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 49.7 bits (119), Expect = 5e-08
 Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 11/89 (12%)

Query: 76  KLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSN---LDLSV 132
           + + L+     ++ ++   L  L   + L L  N + +     I +LS + N   L L  
Sbjct: 26  EKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEK-----ISSLSGMENLRILSLGR 79

Query: 133 NNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
           N +    I +L     +L+ L++SYNQ++
Sbjct: 80  NLIK--KIENLDAVADTLEELWISYNQIA 106

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.9 bits (104), Expect = 5e-06
 Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 7/105 (6%)

Query: 24  NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR 83
           + L   + L L  N    KI S+LS  + LR +SL  +     I         L  L++ 
Sbjct: 45  STLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWIS 101

Query: 84  GNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNL 128
            NQ+       +  L  L +L++ NN +T      I  L++L  L
Sbjct: 102 YNQI--ASLSGIEKLVNLRVLYMSNNKITN--WGEIDKLAALDKL 142

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 21/97 (21%), Positives = 42/97 (43%), Gaps = 10/97 (10%)

Query: 67  IPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLS 126
           +   +  +     L L  N ++ +I   L  +  L +L L  N + + I +      +L 
Sbjct: 40  MDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIKK-IENLDAVADTLE 96

Query: 127 NLDLSVNNLTGGIIPSL--LGNQSSLQTLYLSYNQLS 161
            L +S N +      SL  +    +L+ LY+S N+++
Sbjct: 97  ELWISYNQIA-----SLSGIEKLVNLRVLYMSNNKIT 128

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 49.2 bits (118), Expect = 6e-08
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 5/84 (5%)

Query: 79  RLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFN-LSSLSNLDLSVNNLTG 137
           RL L  N+LQ         L +L  L L  N +  ++P  +F+ L+ L+ L L  N L  
Sbjct: 32  RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQS 90

Query: 138 GIIPS-LLGNQSSLQTLYLSYNQL 160
             +P+ +    + L+ L L  NQL
Sbjct: 91  --LPNGVFDKLTQLKELALDTNQL 112

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 3/86 (3%)

Query: 75  TKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVN 133
           T+L +L L  NQ+Q         L +L +L+L  N L  ++P+ +F  L+ L  L L  N
Sbjct: 52  TQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELALDTN 110

Query: 134 NLTGGIIPSLLGNQSSLQTLYLSYNQ 159
            L   +   +    +SLQ ++L  N 
Sbjct: 111 QLK-SVPDGIFDRLTSLQKIWLHTNP 135

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 2e-07
 Identities = 43/233 (18%), Positives = 71/233 (30%), Gaps = 85/233 (36%)

Query: 12  NTLFGELPPNFC---NHLSNLESLF------LKNNMFHGKIPSTL--------------- 47
             L  ++ PN+    +H SN++         L+  +      + L               
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262

Query: 48  -SNCKRL---RNISLSLDDFSGTIPKEI------GNVTK-----LIRLYLRGNQLQGEIP 92
             +CK L   R   ++ D  S      I        +T      L+  YL  +    ++P
Sbjct: 263 NLSCKILLTTRFKQVT-DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL--DCRPQDLP 319

Query: 93  EE--------LGNLAEL--EML-----WLQNNF--LTRAIPSSIFNLS---------SLS 126
            E        L  +AE   + L     W   N   LT  I SS+  L           LS
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379

Query: 127 NLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKF---SLLD 176
               S +      IP+          L L +  +       ++ K    SL++
Sbjct: 380 VFPPSAH------IPT--------ILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 8e-05
 Identities = 27/172 (15%), Positives = 53/172 (30%), Gaps = 54/172 (31%)

Query: 3   SLLSIRFTNNTLFGELPPNFCNHLSNLESLF---LKNNMFHGKIPSTLSN-----CKRLR 54
           SLL  ++ +     +LP           S+    +++        +T  N     C +L 
Sbjct: 305 SLLL-KYLDCR-PQDLPREVLTTNPRRLSIIAESIRDG------LATWDNWKHVNCDKLT 356

Query: 55  N-ISLSLDDFSGTIPKEIGNVTKLIRLY-----LRGNQLQGEIPEELGNLAELEMLWLQN 108
             I  SL+      P E        +++        +     IP  L     L ++W   
Sbjct: 357 TIIESSLNVLE---PAE------YRKMFDRLSVFPPSAH---IPTIL-----LSLIWFD- 398

Query: 109 NFLTRAIPSSIFN-LSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQ 159
             + ++    + N L   S ++      T            S+ ++YL    
Sbjct: 399 --VIKSDVMVVVNKLHKYSLVEKQPKEST-----------ISIPSIYLELKV 437

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 17/140 (12%)

Query: 25  HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLS---LDDFSGTIPKEIGNVTKLIRLY 81
           +L N+  LFL  N         L+N K L  + L    + D S      + ++ KL  L 
Sbjct: 66  YLPNVTKLFLNGN--KLTDIKPLANLKNLGWLFLDENKVKDLSS-----LKDLKKLKSLS 118

Query: 82  LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIP 141
           L  N +       L +L +LE L+L NN +T    + +  L+ L  L L  N ++     
Sbjct: 119 LEHNGI--SDINGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD---I 171

Query: 142 SLLGNQSSLQTLYLSYNQLS 161
             L   + LQ LYLS N +S
Sbjct: 172 VPLAGLTKLQNLYLSKNHIS 191

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 38/159 (23%), Positives = 71/159 (44%), Gaps = 18/159 (11%)

Query: 24  NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLS---LDDFSGTIPKEIGNVTKLIRL 80
            +L NL  LFL  N     + S+L + K+L+++SL    + D +G     + ++ +L  L
Sbjct: 87  ANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNGISDING-----LVHLPQLESL 139

Query: 81  YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGII 140
           YL  N++       L  L +L+ L L++N ++      +  L+ L NL LS N+++    
Sbjct: 140 YLGNNKI--TDITVLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLSKNHISD--- 192

Query: 141 PSLLGNQSSLQTLYLSYNQLSGPIPSFILCKFSLLDNIR 179
              L    +L  L L   +     P        + + ++
Sbjct: 193 LRALAGLKNLDVLELFSQECLN-KPINHQSNLVVPNTVK 230

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 44.7 bits (106), Expect = 5e-06
 Identities = 32/141 (22%), Positives = 66/141 (46%), Gaps = 17/141 (12%)

Query: 24  NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLS---LDDFSGTIPKEIGNVTKLIRL 80
           N L++++ +   N+    K    +     +  + L+   L D        + N+  L  L
Sbjct: 43  NELNSIDQIIANNSDI--KSVQGIQYLPNVTKLFLNGNKLTDIKP-----LANLKNLGWL 95

Query: 81  YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGII 140
           +L  N+++ ++   L +L +L+ L L++N ++    + + +L  L +L L  N +T    
Sbjct: 96  FLDENKVK-DL-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKIT---D 148

Query: 141 PSLLGNQSSLQTLYLSYNQLS 161
            ++L   + L TL L  NQ+S
Sbjct: 149 ITVLSRLTKLDTLSLEDNQIS 169

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 31/138 (22%), Positives = 55/138 (39%), Gaps = 15/138 (10%)

Query: 24  NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLS---LDDFSGTIPKEIGNVTKLIRL 80
            HL  LESL+L NN       + LS   +L  +SL    + D        +  +TKL  L
Sbjct: 131 VHLPQLESLYLGNN--KITDITVLSRLTKLDTLSLEDNQISDIVP-----LAGLTKLQNL 183

Query: 81  YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGII 140
           YL  N +       L  L  L++L L +        +   NL   + +  +  +L   + 
Sbjct: 184 YLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL---VT 238

Query: 141 PSLLGNQSSLQTLYLSYN 158
           P ++ +    +   + ++
Sbjct: 239 PEIISDDGDYEKPNVKWH 256

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 38.1 bits (89), Expect = 7e-04
 Identities = 20/117 (17%), Positives = 44/117 (37%), Gaps = 9/117 (7%)

Query: 45  STLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEML 104
            +          +L     +  +      +  + ++    + ++  + + +  L  +  L
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKL 73

Query: 105 WLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
           +L  N LT      + NL +L  L L  N +      S L +   L++L L +N +S
Sbjct: 74  FLNGNKLTDI--KPLANLKNLGWLFLDENKVK---DLSSLKDLKKLKSLSLEHNGIS 125

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 47.8 bits (114), Expect = 4e-07
 Identities = 33/138 (23%), Positives = 56/138 (40%), Gaps = 11/138 (7%)

Query: 24  NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR 83
             L  + +L              +     L  + L  +  +   P  + N+TK+  L L 
Sbjct: 38  ADLDGITTLSAFGTGV--TTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELS 93

Query: 84  GNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSL 143
           GN L  +    +  L  ++ L L +  +T   P  +  LS+L  L L +N +T  I P  
Sbjct: 94  GNPL--KNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITN-ISP-- 146

Query: 144 LGNQSSLQTLYLSYNQLS 161
           L   ++LQ L +   Q+S
Sbjct: 147 LAGLTNLQYLSIGNAQVS 164

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 7/89 (7%)

Query: 73  NVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSV 132
            +   I++    + +   +     +L  +  L      +T      +  L++L  L+L  
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 133 NNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
           N +T     + L N + +  L LS N L 
Sbjct: 73  NQITD---LAPLKNLTKITELELSGNPLK 98

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 28/143 (19%), Positives = 56/143 (39%), Gaps = 15/143 (10%)

Query: 24  NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLS---LDDFSGTIPKEIGNVTKLIRL 80
             L+NL+ L + N        + L+N  +L  +      + D S      + ++  LI +
Sbjct: 148 AGLTNLQYLSIGNA--QVSDLTPLANLSKLTTLKADDNKISDISP-----LASLPNLIEV 200

Query: 81  YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGII 140
           +L+ NQ+       L N + L ++ L N  +T        NL   + +          I 
Sbjct: 201 HLKNNQISDV--SPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP---IA 255

Query: 141 PSLLGNQSSLQTLYLSYNQLSGP 163
           P+ + +  +  +  L++N  S  
Sbjct: 256 PATISDNGTYASPNLTWNLTSFI 278

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 47.0 bits (112), Expect = 8e-07
 Identities = 24/130 (18%), Positives = 45/130 (34%), Gaps = 21/130 (16%)

Query: 53  LRNISLSLDDFSG----TIPKEIGNVTKLIRLYLRGNQLQGE----IPEELGNLAELEML 104
           +   SL LD  +     ++   +     +  + L GN +  E    + E + +  +LE+ 
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 105 WLQNNFLTR----------AIPSSIFNLSSLSNLDLSVNNLT---GGIIPSLLGNQSSLQ 151
              + F  R           +  ++     L  + LS N         +   L   + L+
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125

Query: 152 TLYLSYNQLS 161
            LYL  N L 
Sbjct: 126 HLYLHNNGLG 135

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 44.3 bits (105), Expect = 5e-06
 Identities = 25/160 (15%), Positives = 48/160 (30%), Gaps = 23/160 (14%)

Query: 25  HLSNLESLFLKNNMFHGK----IPSTLSNCKRLRNISLSLDDF-----SGTIPKEIGNVT 75
           +   L S+    N            T  + + L  + +  +          + + +    
Sbjct: 157 NAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ 216

Query: 76  KLIRLYLRGNQLQGE----IPEELGNLAELEMLWLQNNFLT----RAIPSSIFNLS--SL 125
           +L  L L+ N         +   L +   L  L L +  L+     A+  +   L    L
Sbjct: 217 ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGL 276

Query: 126 SNLDLSVNNLTG----GIIPSLLGNQSSLQTLYLSYNQLS 161
             L L  N +       +   +      L  L L+ N+ S
Sbjct: 277 QTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.8 bits (109), Expect = 8e-07
 Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 4/89 (4%)

Query: 73  NVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSV 132
           N  +   L LRG ++   I      L + + +   +N + +        L  L  L ++ 
Sbjct: 17  NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNN 73

Query: 133 NNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
           N +   I   L      L  L L+ N L 
Sbjct: 74  NRICR-IGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.2 bits (97), Expect = 4e-05
 Identities = 23/112 (20%), Positives = 42/112 (37%), Gaps = 3/112 (2%)

Query: 47  LSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWL 106
            +N  R R + L        I      + +   +    N+++ ++ +    L  L+ L +
Sbjct: 15  YTNAVRDRELDLR-GYKIPVIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLV 71

Query: 107 QNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYN 158
            NN + R        L  L+ L L+ N+L        L +  SL  L +  N
Sbjct: 72  NNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 28/137 (20%), Positives = 47/137 (34%), Gaps = 12/137 (8%)

Query: 25  HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84
            L+N     L           +      ++N +    +        +   T L  L+L  
Sbjct: 17  GLANAVKQNLGKQ--SVTDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSH 72

Query: 85  NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLL 144
           NQ+       L +L +LE L +  N L      +    + LS L L  N L        L
Sbjct: 73  NQI--SDLSPLKDLTKLEELSVNRNRLKNL---NGIPSACLSRLFLDNNELRD---TDSL 124

Query: 145 GNQSSLQTLYLSYNQLS 161
            +  +L+ L +  N+L 
Sbjct: 125 IHLKNLEILSIRNNKLK 141

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 44.2 bits (105), Expect = 5e-06
 Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 22/143 (15%)

Query: 24  NHLSNLESLFLKNNMFHGKIP--STLSNCKRLRNISLS---LDDFSGTIPKEIGNVTKLI 78
              +NL+ L L +N    +I   S L +  +L  +S++   L + +G           L 
Sbjct: 60  QFFTNLKELHLSHN----QISDLSPLKDLTKLEELSVNRNRLKNLNG------IPSACLS 109

Query: 79  RLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGG 138
           RL+L  N+L+    + L +L  LE+L ++NN L       +  LS L  LDL  N +T  
Sbjct: 110 RLFLDNNELRD--TDSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITN- 164

Query: 139 IIPSLLGNQSSLQTLYLSYNQLS 161
                L     +  + L+  +  
Sbjct: 165 --TGGLTRLKKVNWIDLTGQKCV 185

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.9 bits (104), Expect = 3e-06
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 80  LYLRGNQLQ-GEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGG 138
           L L  ++   G++        ELE L   N  LT    +++  L+ L  L+LS N ++G 
Sbjct: 22  LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSG- 78

Query: 139 IIPSLLGNQSSLQTLYLSYNQLS 161
            +  L     +L  L LS N++ 
Sbjct: 79  GLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 5/105 (4%)

Query: 57  SLSLDDFSGTIPKEIGNV---TKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTR 113
            L LD+      K  G      +L  L      L   I   L  L +L+ L L +N ++ 
Sbjct: 21  ELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSG 78

Query: 114 AIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYN 158
            +        +L++L+LS N +        L    +L++L L   
Sbjct: 79  GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 37.0 bits (86), Expect = 8e-04
 Identities = 28/114 (24%), Positives = 42/114 (36%), Gaps = 6/114 (5%)

Query: 20  PNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIR 79
               +    LE L   N      I + L    +L+ + LS +  SG +         L  
Sbjct: 35  EGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92

Query: 80  LYLRGNQLQG-EIPEELGNLAELEMLWLQNNFLTRAI---PSSIFNLSSLSNLD 129
           L L GN+++     E L  L  L+ L L N  +T       +    L  L+ LD
Sbjct: 93  LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.9 bits (105), Expect = 4e-06
 Identities = 22/137 (16%), Positives = 44/137 (32%), Gaps = 18/137 (13%)

Query: 25  HLSNLESLFLKNNMFHGKIPSTL--SNCKRLRNISLSL---DDFSGTIPKEI------GN 73
              NL+SL + +      +   +  S+   L  + L +   D                  
Sbjct: 191 PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDR 250

Query: 74  VTKLIRLYLRGNQLQGEIPEELGN---LAELEMLWLQNNFLT----RAIPSSIFNLSSLS 126
              L  L +   + Q  + E       L +LE + +    LT    R +   +  +  L 
Sbjct: 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLK 310

Query: 127 NLDLSVNNLTGGIIPSL 143
            +++  N L+  +   L
Sbjct: 311 FINMKYNYLSDEMKKEL 327

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 44.7 bits (106), Expect = 5e-06
 Identities = 24/138 (17%), Positives = 42/138 (30%), Gaps = 15/138 (10%)

Query: 24  NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR 83
           +    L  L    N       + +      +   L           ++   T+L  L   
Sbjct: 124 SQNPLLTYLNCARNTL-----TEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCS 178

Query: 84  GNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSL 143
            N++      ++     L  L    N +T+     +     L+ LD S N LT   I   
Sbjct: 179 FNKITE---LDVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE--ID-- 228

Query: 144 LGNQSSLQTLYLSYNQLS 161
           +   + L     S N L+
Sbjct: 229 VTPLTQLTYFDCSVNPLT 246

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 28/135 (20%), Positives = 42/135 (31%), Gaps = 12/135 (8%)

Query: 27  SNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQ 86
            N  S              +      L   SL   + S T    I  +T L +L    N 
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLT--SLDCHNSSITDMTGIEKLTGLTKLICTSNN 75

Query: 87  LQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGN 146
           +      +L     L  L   +N LT      +  L+ L+ L+   N LT   +      
Sbjct: 76  ITT---LDLSQNTNLTYLACDSNKLTN---LDVTPLTKLTYLNCDTNKLTKLDV----SQ 125

Query: 147 QSSLQTLYLSYNQLS 161
              L  L  + N L+
Sbjct: 126 NPLLTYLNCARNTLT 140

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 29/137 (21%), Positives = 53/137 (38%), Gaps = 15/137 (10%)

Query: 25  HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84
            L+ L  L   +N     +   LS    L  ++   +  +     ++  +TKL  L    
Sbjct: 62  KLTGLTKLICTSNNI-TTLD--LSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDT 115

Query: 85  NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLL 144
           N+L      ++     L  L    N LT      + + + L+ LD  +N     I    +
Sbjct: 116 NKLT---KLDVSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKK---ITKLDV 166

Query: 145 GNQSSLQTLYLSYNQLS 161
             Q+ L TL  S+N+++
Sbjct: 167 TPQTQLTTLDCSFNKIT 183

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 43.8 bits (104), Expect = 9e-06
 Identities = 30/156 (19%), Positives = 57/156 (36%), Gaps = 21/156 (13%)

Query: 27  SNLESLFLKNNMFHGK----IPSTLSNCKRLRNISLSLDDFSGTIPKEIG-----NVTKL 77
             LE L L+           + S L      + +++S +D +    + +      +  +L
Sbjct: 142 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQL 201

Query: 78  IRLYLRGNQLQGE----IPEELGNLAELEMLWLQNNFLTRA-----IPSSIFNLSSLSNL 128
             L L    +  +    +   + + A L  L L +N L         P  +   S L  L
Sbjct: 202 EALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTL 261

Query: 129 DLSVNNLT---GGIIPSLLGNQSSLQTLYLSYNQLS 161
            +    +T    G +  +L  + SL+ L L+ N+L 
Sbjct: 262 WIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 27/161 (16%), Positives = 56/161 (34%), Gaps = 21/161 (13%)

Query: 22  FCNHLSNLESLFLKNNMFHGK----IPSTLSNCKRLRNISLSLDDFSGTIPKEIGNV--- 74
             +    LE+L L++          +   +++   LR ++L  +        E+      
Sbjct: 194 LKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLH 253

Query: 75  --TKLIRLYLRGNQLQGE----IPEELGNLAELEMLWLQNNFLT----RAIPSSIFN-LS 123
             ++L  L++    +  +    +   L     L+ L L  N L     R +  ++     
Sbjct: 254 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGC 313

Query: 124 SLSNLDLSVNNLTGG---IIPSLLGNQSSLQTLYLSYNQLS 161
            L +L +   + T        S+L     L  L +S N+L 
Sbjct: 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 31/159 (19%), Positives = 58/159 (36%), Gaps = 22/159 (13%)

Query: 25  HLSNLESLFLKNNMFHGKIPSTLS-----NCKRLRNISLSLDDFSGTIPKEIGNV----T 75
              +L+ L L  N    +    L         +L ++ +    F+        +V     
Sbjct: 282 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR 341

Query: 76  KLIRLYLRGNQLQGEIPEELG-----NLAELEMLWLQNNFLT----RAIPSSIFNLSSLS 126
            L+ L +  N+L+     EL        + L +LWL +  ++     ++ +++    SL 
Sbjct: 342 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 401

Query: 127 NLDLSVNNLTG----GIIPSLLGNQSSLQTLYLSYNQLS 161
            LDLS N L       ++ S+      L+ L L     S
Sbjct: 402 ELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 29/160 (18%), Positives = 56/160 (35%), Gaps = 21/160 (13%)

Query: 23  CNHLSNLESLFLKNNMFHGK----IPSTLSNCKRLRNISLSLDDFSGTIPKEIGNV---- 74
            +  S L +L++       K    +   L   + L+ +SL+ ++      + +       
Sbjct: 252 LHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEP 311

Query: 75  -TKLIRLYLRGNQLQGE----IPEELGNLAELEMLWLQNNFLT----RAIPSSI-FNLSS 124
             +L  L+++               L     L  L + NN L     R +   +    S 
Sbjct: 312 GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSV 371

Query: 125 LSNLDLSVNNLTG---GIIPSLLGNQSSLQTLYLSYNQLS 161
           L  L L+  +++      + + L    SL+ L LS N L 
Sbjct: 372 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.5 bits (95), Expect = 6e-05
 Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 5/107 (4%)

Query: 58  LSLDDFSGTIPKEIGNV---TKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRA 114
           L LD+      K  G       L  L L    L   +   L  L +L+ L L  N +   
Sbjct: 29  LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGG 86

Query: 115 IPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS 161
           +      L +L++L+LS N L        L     L++L L   +++
Sbjct: 87  LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 37.4 bits (87), Expect = 7e-04
 Identities = 31/114 (27%), Positives = 43/114 (37%), Gaps = 6/114 (5%)

Query: 20  PNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIR 79
                   NLE L L N      + S L    +L+ + LS +   G +      +  L  
Sbjct: 42  EGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99

Query: 80  LYLRGNQLQG-EIPEELGNLAELEMLWLQNNFLTRAI---PSSIFNLSSLSNLD 129
           L L GN+L+     E L  L  L+ L L N  +T       S    L  L+ LD
Sbjct: 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD 153

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 40.3 bits (95), Expect = 8e-05
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 4/61 (6%)

Query: 75  TKLIRLYLRGNQLQGEIPEEL-GNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSV 132
           T+L RL L  NQL   +P  +   L +L  L L +N L ++IP   F NL SL+++ L  
Sbjct: 54  TQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQL-KSIPRGAFDNLKSLTHIWLLN 111

Query: 133 N 133
           N
Sbjct: 112 N 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 38.4 bits (90), Expect = 4e-04
 Identities = 24/82 (29%), Positives = 31/82 (37%), Gaps = 25/82 (30%)

Query: 79  RLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGG 138
            LYL  NQ+    P     L +L  L L NN LT  +P+ +F+             LT  
Sbjct: 34  VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFD------------KLT-- 78

Query: 139 IIPSLLGNQSSLQTLYLSYNQL 160
                      L  L L+ NQL
Sbjct: 79  ----------QLTQLSLNDNQL 90

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 75  TKLIRLYLRGNQLQGEIPEEL-GNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSV 132
             L +LY   N+L   IP  +   L +L  L L +N L ++IP   F NL SL+++ L  
Sbjct: 57  VNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDNHL-KSIPRGAFDNLKSLTHIYLYN 114

Query: 133 N 133
           N
Sbjct: 115 N 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 25/82 (30%)

Query: 79  RLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGG 138
           RL+L  NQ+    P    +L  L+ L+  +N LT AIP+ +F+             LT  
Sbjct: 37  RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFD------------KLT-- 81

Query: 139 IIPSLLGNQSSLQTLYLSYNQL 160
                      L  L L+ N L
Sbjct: 82  ----------QLTQLDLNDNHL 93

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 12/100 (12%)

Query: 74  VTKLIRLYLRGNQLQGEIPEELG-----NLAELEMLWLQNNFLT----RAIPSSIFNLSS 124
             +  +L L+ N L  E  ++L      +  ++  L L NN LT      +   +   +S
Sbjct: 125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTS 184

Query: 125 LSNLDLSVNNLT---GGIIPSLLGNQSSLQTLYLSYNQLS 161
           +++L L    L      ++ + L     LQ L ++YN   
Sbjct: 185 VTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 14/101 (13%)

Query: 75  TKLIRLYLRGNQLQGEIPEELG-----NLAELEMLWLQNNFLT----RAIPSSI-FNLSS 124
             +  L L  N L      EL        A +  L L  N L       +   +    ++
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81

Query: 125 LSNLDLSVNNLTG----GIIPSLLGNQSSLQTLYLSYNQLS 161
           +++L+LS N L+      ++ +L     ++  L L +N  S
Sbjct: 82  VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS 122

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 37.8 bits (88), Expect = 9e-04
 Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 14/101 (13%)

Query: 75  TKLIRLYLRGNQLQGEIPEELGNL-----AELEMLWLQNNFLT----RAIPSSIFNL-SS 124
             +  L L GN L  +  +EL          + +L L  N  +         +  NL +S
Sbjct: 80  ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS 139

Query: 125 LSNLDLSVNNLTG----GIIPSLLGNQSSLQTLYLSYNQLS 161
           +++L+L  N+L       +I  L    +++ +L L  N L+
Sbjct: 140 ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	180
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.91
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.91
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.91
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.91
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.9
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.9
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.9
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.87
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.87
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.87
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.87
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.87
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.87
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.87
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.87
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.87
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.87
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.87
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.86
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.86
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.86
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.86
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.86
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.86
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.86
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.86
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.85
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.85
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.85
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.85
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.85
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.85
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.85
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.85
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.85
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.84
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.84
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.84
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.84
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.84
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.84
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.84
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.84
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.83
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.83
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.83
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.83
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.83
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.83
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.82
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.82
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.82
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.82
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.82
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.82
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.81
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.81
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.81
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.81
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.81
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.81
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.81
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.8
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.8
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.8
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.79
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.79
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.79
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.79
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.79
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.79
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.79
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.78
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.78
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.78
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.78
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.78
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.77
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.77
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.77
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.75
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.75
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.75
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.75
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.74
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.73
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.73
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.72
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.72
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.72
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.71
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.71
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.71
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.71
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.71
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.7
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.7
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.69
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.69
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.68
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.68
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.68
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.67
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.66
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.66
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.66
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.65
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.65
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.62
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.6
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.6
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.58
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.57
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.57
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.56
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.56
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.55
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.55
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.54
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.52
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.52
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.5
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.49
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.48
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.43
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.4
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.35
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.33
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.33
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.31
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.16
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.08
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.88
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.85
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.81
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.75
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.75
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.46
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.41
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.39
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.37
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.34
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.32
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.31
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.31
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.69
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.69
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.93
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.66
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	87.29
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	84.51

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.92  E-value=1.5e-23  Score=151.06  Aligned_cols=167  Identities=22%  Similarity=0.261  Sum_probs=115.4

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccC---------CCCccEEEecccccccccchhhh
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSN---------CKRLRNISLSLDDFSGTIPKEIG   72 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~---------l~~L~~L~l~~~~~~~~~~~~~~   72 (180)
                      ++|++|++++|.+. .+|..+.. +++|++|++++|.+.+..|..+..         +++|+.|++++|.+. ..|..+.
T Consensus       127 ~~L~~L~Ls~n~l~-~lp~~l~~-l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~  203 (328)
T 4fcg_A          127 AGLETLTLARNPLR-ALPASIAS-LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIA  203 (328)
T ss_dssp             TTCSEEEEESCCCC-CCCGGGGG-CTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGG
T ss_pred             CCCCEEECCCCccc-cCcHHHhc-CcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhc
Confidence            45556666666554 45544433 666666666665555455544432         666666666666666 5566677


Q ss_pred             ccCCccEEEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccE
Q 030257           73 NVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQT  152 (180)
Q Consensus        73 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  152 (180)
                      .+++|++|++++|.+.. .|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+. ++..+..+++|+.
T Consensus       204 ~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~-~p~~~~~l~~L~~  281 (328)
T 4fcg_A          204 NLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT-LPLDIHRLTQLEK  281 (328)
T ss_dssp             GCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCB-CCTTGGGCTTCCE
T ss_pred             CCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhh-cchhhhcCCCCCE
Confidence            77788888888877763 455677778888888888877777777777888888888888776653 6666778888888


Q ss_pred             EEccCCcccCCCChhhhhhcc
Q 030257          153 LYLSYNQLSGPIPSFILCKFS  173 (180)
Q Consensus       153 l~l~~n~~~~~~~~~~~~~~~  173 (180)
                      |++++|.+.+.+|..+..+..
T Consensus       282 L~L~~n~~~~~iP~~l~~L~~  302 (328)
T 4fcg_A          282 LDLRGCVNLSRLPSLIAQLPA  302 (328)
T ss_dssp             EECTTCTTCCCCCGGGGGSCT
T ss_pred             EeCCCCCchhhccHHHhhccC
Confidence            888888888888888776654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=8.3e-23  Score=143.42  Aligned_cols=158  Identities=24%  Similarity=0.271  Sum_probs=95.1

Q ss_pred             CceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEe
Q 030257            3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL   82 (180)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l   82 (180)
                      ++++|++++|.+. .++...+.++++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|++
T Consensus        38 ~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  116 (270)
T 2o6q_A           38 DTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL  116 (270)
T ss_dssp             TCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred             CCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence            4666666666665 455544455666777777666666444444556666666666666666554455566666666666


Q ss_pred             eCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccC
Q 030257           83 RGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSG  162 (180)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  162 (180)
                      .+|.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++. .+..+..+++|+.|++++|.+.+
T Consensus       117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~  195 (270)
T 2o6q_A          117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV-PEGAFDKLTELKTLKLDNNQLKR  195 (270)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe-ChhHhccCCCcCEEECCCCcCCc
Confidence            66666544444556666666666666666554444555666666666666666532 23345555666666666666654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.91  E-value=1.2e-23  Score=150.69  Aligned_cols=142  Identities=24%  Similarity=0.381  Sum_probs=58.1

Q ss_pred             CCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccC-CccEEEeeCCcCCCCcchhhcCCCcccEE
Q 030257           26 LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVT-KLIRLYLRGNQLQGEIPEELGNLAELEML  104 (180)
Q Consensus        26 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~l~l~~~~~~~~~~~~~~~~~~L~~l  104 (180)
                      +++|++|++++|.+.+..|..+..+++|++|++++|.+....|..+..++ +|+++++++|.+....|..+..++ |+.+
T Consensus       124 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L  202 (313)
T 1ogq_A          124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFV  202 (313)
T ss_dssp             CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEE
T ss_pred             CCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEE
Confidence            33444444444433333333333444444444444443333333333333 344444443333322233332222 3333


Q ss_pred             EecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCCChhhhh
Q 030257          105 WLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILC  170 (180)
Q Consensus       105 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~  170 (180)
                      ++++|.+.+..+..+..+++|++|++++|.+++. . ..+..+++|+.|++++|.+++.+|..+..
T Consensus       203 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~  266 (313)
T 1ogq_A          203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD-L-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQ  266 (313)
T ss_dssp             ECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB-G-GGCCCCTTCCEEECCSSCCEECCCGGGGG
T ss_pred             ECcCCcccCcCCHHHhcCCCCCEEECCCCceeee-c-CcccccCCCCEEECcCCcccCcCChHHhc
Confidence            3333333333334444445555555555544421 1 12344455555555555555445544433

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.91  E-value=1.9e-23  Score=149.58  Aligned_cols=163  Identities=28%  Similarity=0.461  Sum_probs=145.5

Q ss_pred             CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCC-CccEEEecccccccccchhhhccCCccE
Q 030257            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCK-RLRNISLSLDDFSGTIPKEIGNVTKLIR   79 (180)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~   79 (180)
                      +++|++|++++|.+.+.+|..+.. +++|++|++++|.+.+..|..+..++ +|+.|++++|.+....|..+..+. |++
T Consensus       124 l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~  201 (313)
T 1ogq_A          124 IKTLVTLDFSYNALSGTLPPSISS-LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAF  201 (313)
T ss_dssp             CTTCCEEECCSSEEESCCCGGGGG-CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSE
T ss_pred             CCCCCEEeCCCCccCCcCChHHhc-CCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccE
Confidence            578999999999998767766655 99999999999999888899999998 999999999999878888888887 999


Q ss_pred             EEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCc
Q 030257           80 LYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQ  159 (180)
Q Consensus        80 l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~  159 (180)
                      |++++|.+....+..+..+++|+.+++++|.+.+..+. +..+++|++|++++|.+++. .+..+..+++|+.|++++|.
T Consensus       202 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~  279 (313)
T 1ogq_A          202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGT-LPQGLTQLKFLHSLNVSFNN  279 (313)
T ss_dssp             EECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEEC-CCGGGGGCTTCCEEECCSSE
T ss_pred             EECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCc-CChHHhcCcCCCEEECcCCc
Confidence            99999998877888899999999999999999865555 77889999999999999864 78888999999999999999


Q ss_pred             ccCCCChh
Q 030257          160 LSGPIPSF  167 (180)
Q Consensus       160 ~~~~~~~~  167 (180)
                      +++.+|..
T Consensus       280 l~~~ip~~  287 (313)
T 1ogq_A          280 LCGEIPQG  287 (313)
T ss_dssp             EEEECCCS
T ss_pred             ccccCCCC
Confidence            99888876

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.91  E-value=5.2e-23  Score=145.47  Aligned_cols=159  Identities=26%  Similarity=0.312  Sum_probs=75.9

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEccccc-CCCCCCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNM-FHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   80 (180)
                      ++|++|++++|.+. .++...+.++++|++|++++|. +....+..+..+++|++|++++|.+....+..+..+++|++|
T Consensus        56 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  134 (285)
T 1ozn_A           56 RNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL  134 (285)
T ss_dssp             TTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCEEECCCCccc-eeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEE
Confidence            34444444444443 2222222334445555554443 333334444445555555555555444444444455555555


Q ss_pred             EeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcc
Q 030257           81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQL  160 (180)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~  160 (180)
                      ++++|.+....+..+..+++|+.+++++|.+.+..+..+..+++|++|++++|.+++. .+..+..+++|+.|++++|.+
T Consensus       135 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l  213 (285)
T 1ozn_A          135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV-HPHAFRDLGRLMTLYLFANNL  213 (285)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCC
T ss_pred             ECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccccc-CHhHccCcccccEeeCCCCcC
Confidence            5555554433333344455555555555555433333444555555555555555432 344455555666666666655


Q ss_pred             cC
Q 030257          161 SG  162 (180)
Q Consensus       161 ~~  162 (180)
                      .+
T Consensus       214 ~~  215 (285)
T 1ozn_A          214 SA  215 (285)
T ss_dssp             SC
T ss_pred             Cc
Confidence            54

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.91  E-value=9.9e-23  Score=141.61  Aligned_cols=160  Identities=23%  Similarity=0.255  Sum_probs=134.8

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   81 (180)
                      +++++|++++|.+. .++...+.++++|++|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|++|+
T Consensus        35 ~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  113 (251)
T 3m19_A           35 ADTEKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLY  113 (251)
T ss_dssp             TTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEEccCCCcC-ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEE
Confidence            46888999999887 45555566699999999999999877777788999999999999999877777788999999999


Q ss_pred             eeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCccc
Q 030257           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS  161 (180)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  161 (180)
                      +++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++. .+..+..+++|+.|++++|++.
T Consensus       114 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV-PHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSCCBC
T ss_pred             cCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc-CHHHHhCCCCCCEEEeeCCcee
Confidence            999998865556678889999999999999876666788899999999999998843 4456788899999999999987


Q ss_pred             CC
Q 030257          162 GP  163 (180)
Q Consensus       162 ~~  163 (180)
                      ..
T Consensus       193 c~  194 (251)
T 3m19_A          193 CS  194 (251)
T ss_dssp             TT
T ss_pred             CC
Confidence            65

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.90  E-value=4.8e-23  Score=145.66  Aligned_cols=168  Identities=22%  Similarity=0.232  Sum_probs=146.0

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccc-cccccchhhhccCCccEE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDD-FSGTIPKEIGNVTKLIRL   80 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~l   80 (180)
                      +++++|++++|.+. .++...+.++++|++|++++|.+....+..+..+++|++|++++|. +....+..+..+++|++|
T Consensus        32 ~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L  110 (285)
T 1ozn_A           32 AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (285)
T ss_dssp             TTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence            57899999999987 5666666779999999999999987778889999999999999997 776667889999999999


Q ss_pred             EeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcc
Q 030257           81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQL  160 (180)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~  160 (180)
                      ++.+|.+....+..+..+++|+.+++++|.+.+..+..+..+++|++|++++|.+++. .+..+..+++|+.|++++|.+
T Consensus       111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l  189 (285)
T 1ozn_A          111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV-PERAFRGLHSLDRLLLHQNRV  189 (285)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCC
T ss_pred             ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc-CHHHhcCccccCEEECCCCcc
Confidence            9999999876677888999999999999999876667788999999999999998742 344578899999999999999


Q ss_pred             cCCCChhhhhh
Q 030257          161 SGPIPSFILCK  171 (180)
Q Consensus       161 ~~~~~~~~~~~  171 (180)
                      .+..|..+...
T Consensus       190 ~~~~~~~~~~l  200 (285)
T 1ozn_A          190 AHVHPHAFRDL  200 (285)
T ss_dssp             CEECTTTTTTC
T ss_pred             cccCHhHccCc
Confidence            98778777654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.90  E-value=7e-23  Score=147.55  Aligned_cols=164  Identities=24%  Similarity=0.372  Sum_probs=109.9

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhh---------
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIG---------   72 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---------   72 (180)
                      ++|++|++++|.+. .+|..+.. +++|++|++++|.+. ..|..+..+++|++|++++|......|..+.         
T Consensus       104 ~~L~~L~L~~n~l~-~lp~~~~~-l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~  180 (328)
T 4fcg_A          104 SHLQHMTIDAAGLM-ELPDTMQQ-FAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ  180 (328)
T ss_dssp             TTCSEEEEESSCCC-CCCSCGGG-GTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEE
T ss_pred             CCCCEEECCCCCcc-chhHHHhc-cCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhc
Confidence            45666666666665 55554433 666666666666666 5566666666666666666655444444443         


Q ss_pred             ccCCccEEEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccE
Q 030257           73 NVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQT  152 (180)
Q Consensus        73 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  152 (180)
                      .+++|++|++++|.+. ..|..+..+++|+.|++++|.+.+ .+..+..+++|++|++++|.+.+. .+..+..+++|+.
T Consensus       181 ~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~  257 (328)
T 4fcg_A          181 GLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRN-YPPIFGGRAPLKR  257 (328)
T ss_dssp             ESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCB-CCCCTTCCCCCCE
T ss_pred             cCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhh-hHHHhcCCCCCCE
Confidence            2667777777777666 456667777778888888877774 455677777888888888776653 6666777788888


Q ss_pred             EEccCCcccCCCChhhhhh
Q 030257          153 LYLSYNQLSGPIPSFILCK  171 (180)
Q Consensus       153 l~l~~n~~~~~~~~~~~~~  171 (180)
                      |++++|.+.+.+|..+..+
T Consensus       258 L~L~~n~~~~~~p~~~~~l  276 (328)
T 4fcg_A          258 LILKDCSNLLTLPLDIHRL  276 (328)
T ss_dssp             EECTTCTTCCBCCTTGGGC
T ss_pred             EECCCCCchhhcchhhhcC
Confidence            8888887777777776554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=2.2e-22  Score=141.45  Aligned_cols=161  Identities=22%  Similarity=0.248  Sum_probs=112.6

Q ss_pred             CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (180)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   80 (180)
                      +++|++|++++|.+.+ ++  .+.++++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|
T Consensus        62 l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  138 (272)
T 3rfs_A           62 LPNVRYLALGGNKLHD-IS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL  138 (272)
T ss_dssp             CTTCCEEECTTSCCCC-CG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCcEEECCCCCCCC-ch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEE
Confidence            4667777777777653 32  33447777777777777775555566777777777777777776555567777777888


Q ss_pred             EeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcc
Q 030257           81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQL  160 (180)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~  160 (180)
                      ++++|.+....+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++. .+..+..+++|+.|++++|++
T Consensus       139 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~  217 (272)
T 3rfs_A          139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYIWLHDNPW  217 (272)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCB
T ss_pred             ECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc-CHHHHhCCcCCCEEEccCCCc
Confidence            8777777655555566777778888877777765556667777788888887777643 444566777778888877777


Q ss_pred             cCCCC
Q 030257          161 SGPIP  165 (180)
Q Consensus       161 ~~~~~  165 (180)
                      .+..|
T Consensus       218 ~~~~~  222 (272)
T 3rfs_A          218 DCTCP  222 (272)
T ss_dssp             CCCTT
T ss_pred             cccCc
Confidence            65554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.90  E-value=9.4e-23  Score=161.39  Aligned_cols=168  Identities=33%  Similarity=0.516  Sum_probs=91.8

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   81 (180)
                      ++|++|++.+|.+.+.+|..+. ++++|++|++++|.+.+..|..+..+++|++|++++|.+....|..+..+++|++++
T Consensus       466 ~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  544 (768)
T 3rgz_A          466 KTLETLILDFNDLTGEIPSGLS-NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD  544 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEE
T ss_pred             CCceEEEecCCcccCcCCHHHh-cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEE
Confidence            4455555555555544444333 255566666666555555555555556666666666655555555555555555555


Q ss_pred             eeCCcCCCCcchh-------------------------------------------------------------------
Q 030257           82 LRGNQLQGEIPEE-------------------------------------------------------------------   94 (180)
Q Consensus        82 l~~~~~~~~~~~~-------------------------------------------------------------------   94 (180)
                      +++|.+....|..                                                                   
T Consensus       545 Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~  624 (768)
T 3rgz_A          545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT  624 (768)
T ss_dssp             CCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEEC
T ss_pred             CCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccC
Confidence            5555443222221                                                                   


Q ss_pred             ---hcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCCChhhhhh
Q 030257           95 ---LGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCK  171 (180)
Q Consensus        95 ---~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~  171 (180)
                         +..+++|+.+++++|.+++.+|..+..++.|+.|++++|.+++. +|..++.+++|+.||+++|.+++.+|..+..+
T Consensus       625 ~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~-ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l  703 (768)
T 3rgz_A          625 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS-IPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL  703 (768)
T ss_dssp             CCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSC-CCGGGGGCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred             chhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCC-CChHHhCCCCCCEEECCCCcccCcCChHHhCC
Confidence               11234455555666655555555556666666666666666543 55555666666666666666666666555443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=2.5e-22  Score=140.98  Aligned_cols=163  Identities=25%  Similarity=0.298  Sum_probs=143.3

Q ss_pred             CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (180)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   80 (180)
                      +++|++|++++|.+. .++..++.++++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|
T Consensus        60 l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  138 (270)
T 2o6q_A           60 LTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYL  138 (270)
T ss_dssp             CTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEE
Confidence            578999999999987 7888888889999999999999986666778899999999999999987777788999999999


Q ss_pred             EeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcc
Q 030257           81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQL  160 (180)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~  160 (180)
                      ++++|.+....+..+..+++|+.+++++|.+.+..+..+..+++|++|++++|.+++. .+..+..+++|+.|++++|++
T Consensus       139 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          139 SLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV-PEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCB
T ss_pred             ECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC-CHHHhccccCCCEEEecCCCe
Confidence            9999999866556688999999999999999877677788999999999999999843 445678899999999999998


Q ss_pred             cCCCC
Q 030257          161 SGPIP  165 (180)
Q Consensus       161 ~~~~~  165 (180)
                      ....+
T Consensus       218 ~c~c~  222 (270)
T 2o6q_A          218 DCTCN  222 (270)
T ss_dssp             CCSSS
T ss_pred             eCCCc
Confidence            75543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.90  E-value=1e-22  Score=161.17  Aligned_cols=169  Identities=39%  Similarity=0.554  Sum_probs=142.9

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   81 (180)
                      ++|++|++.+|.+.+.+|..+.. +++|++|++++|.+.+..|..+..+++|+.|++++|.+....|..+..+++|++++
T Consensus       394 ~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  472 (768)
T 3rgz_A          394 NTLQELYLQNNGFTGKIPPTLSN-CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI  472 (768)
T ss_dssp             CCCCEEECCSSEEEEECCGGGGG-CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred             CCccEEECCCCccccccCHHHhc-CCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence            46788888888877666666544 88899999999888878888888889999999999988877888888899999999


Q ss_pred             eeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCccc
Q 030257           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS  161 (180)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  161 (180)
                      +.+|.+....|..+..+++|+.+++++|.+.+..|..+..+++|++|++++|.+++. .|..+..+++|+.|++++|.++
T Consensus       473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~  551 (768)
T 3rgz_A          473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN-IPAELGDCRSLIWLDLNTNLFN  551 (768)
T ss_dssp             CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEE-CCGGGGGCTTCCEEECCSSEEE
T ss_pred             ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCc-CCHHHcCCCCCCEEECCCCccC
Confidence            999988877888888889999999999999888888888899999999999988754 6777888999999999999999


Q ss_pred             CCCChhhhhhc
Q 030257          162 GPIPSFILCKF  172 (180)
Q Consensus       162 ~~~~~~~~~~~  172 (180)
                      +.+|..++...
T Consensus       552 g~ip~~~~~~~  562 (768)
T 3rgz_A          552 GTIPAAMFKQS  562 (768)
T ss_dssp             SBCCGGGGTTT
T ss_pred             CcCChHHhccc
Confidence            88888776543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.90  E-value=4e-23  Score=147.39  Aligned_cols=167  Identities=23%  Similarity=0.221  Sum_probs=88.1

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCC-ccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIP-STLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   80 (180)
                      ++|++|++++|.+. .++..+. ++++|++|++++|.+....+ ..+..+++|++|++++|.+....+..+..+++|++|
T Consensus        78 ~~L~~L~Ls~n~i~-~l~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  155 (306)
T 2z66_A           78 TSLKYLDLSFNGVI-TMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL  155 (306)
T ss_dssp             SCCCEEECCSCSEE-EEEEEEE-TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEE
T ss_pred             cccCEEECCCCccc-cChhhcC-CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEE
Confidence            34455555554443 2333322 25555555555555543222 345555566666666655554444555555666666


Q ss_pred             EeeCCcCCC-CcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCc
Q 030257           81 YLRGNQLQG-EIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQ  159 (180)
Q Consensus        81 ~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~  159 (180)
                      ++.+|.+.. ..|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++. .+..+..+++|+.|++++|.
T Consensus       156 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~  234 (306)
T 2z66_A          156 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL-DTFPYKCLNSLQVLDYSLNH  234 (306)
T ss_dssp             ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBC-CSGGGTTCTTCCEEECTTSC
T ss_pred             ECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCcc-ChhhccCcccCCEeECCCCC
Confidence            666655543 2344555556666666666665544455555556666666666655532 22334555566666666666


Q ss_pred             ccCCCChhhhhh
Q 030257          160 LSGPIPSFILCK  171 (180)
Q Consensus       160 ~~~~~~~~~~~~  171 (180)
                      +.+..+..+...
T Consensus       235 l~~~~~~~~~~~  246 (306)
T 2z66_A          235 IMTSKKQELQHF  246 (306)
T ss_dssp             CCBCSSSSCCCC
T ss_pred             CcccCHHHHHhh
Confidence            655555544443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.89  E-value=1.4e-22  Score=137.14  Aligned_cols=162  Identities=22%  Similarity=0.203  Sum_probs=107.1

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   81 (180)
                      +++++|++++|.+. .++..++.++++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|+
T Consensus        28 ~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           28 AQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence            35677777777765 45555555577777777777777654445566677777777777777655555566777777777


Q ss_pred             eeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCccc
Q 030257           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS  161 (180)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  161 (180)
                      +++|.+....+..+..+++|+.+++++|.+.+..+..+..+++|++|++++|.+..        .+++++.|+++.|.++
T Consensus       107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~L~~~~n~~~  178 (208)
T 2o6s_A          107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHS  178 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC--------CTTTTHHHHHHHHHCT
T ss_pred             cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec--------CCCCHHHHHHHHHhCC
Confidence            77777665444456667777777777777765555556667777777777775542        2456677777777777


Q ss_pred             CCCChhhhhhc
Q 030257          162 GPIPSFILCKF  172 (180)
Q Consensus       162 ~~~~~~~~~~~  172 (180)
                      +.+|.+++.+.
T Consensus       179 g~ip~~~~~l~  189 (208)
T 2o6s_A          179 GVVRNSAGSVA  189 (208)
T ss_dssp             TTBBCTTSSBC
T ss_pred             ceeeccCcccc
Confidence            77776665544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.89  E-value=1.1e-21  Score=136.37  Aligned_cols=164  Identities=22%  Similarity=0.204  Sum_probs=141.7

Q ss_pred             CceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEe
Q 030257            3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL   82 (180)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l   82 (180)
                      +.+.++++++.+. .+|..+.   ++++.|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|++|++
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP---ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCeEEecCCCCcc-ccCCCCC---CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            4577889888887 6787663   58999999999999888888999999999999999999887888999999999999


Q ss_pred             eCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccC
Q 030257           83 RGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSG  162 (180)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  162 (180)
                      ++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++. .+..+..+++|+.|++++|.+.+
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~  169 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI-PAGAFDKLTNLQTLSLSTNQLQS  169 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCcc-CHHHcCcCcCCCEEECCCCcCCc
Confidence            99999866667788999999999999999977677788999999999999999843 44468889999999999999997


Q ss_pred             CCChhhhhh
Q 030257          163 PIPSFILCK  171 (180)
Q Consensus       163 ~~~~~~~~~  171 (180)
                      ..+..+..+
T Consensus       170 ~~~~~~~~l  178 (251)
T 3m19_A          170 VPHGAFDRL  178 (251)
T ss_dssp             CCTTTTTTC
T ss_pred             cCHHHHhCC
Confidence            666555444

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=1.7e-21  Score=136.83  Aligned_cols=165  Identities=25%  Similarity=0.242  Sum_probs=139.9

Q ss_pred             CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (180)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   80 (180)
                      +++|+.|.+.++.+. .++ . +..+++|++|++++|.+.+ . ..+..+++|++|++++|.+....+..+..+++|++|
T Consensus        40 l~~L~~L~l~~~~i~-~~~-~-l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  114 (272)
T 3rfs_A           40 LNSIDQIIANNSDIK-SVQ-G-IQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL  114 (272)
T ss_dssp             HTTCCEEECTTSCCC-CCT-T-GGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccceeeeeeCCCCcc-ccc-c-cccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence            367899999999876 343 3 4459999999999999874 3 468899999999999999987777778999999999


Q ss_pred             EeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcc
Q 030257           81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQL  160 (180)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~  160 (180)
                      ++.+|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++. .+..+..+++|+.|++++|.+
T Consensus       115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l  193 (272)
T 3rfs_A          115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL-PEGVFDKLTQLKDLRLYQNQL  193 (272)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC
T ss_pred             ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc-CHHHhcCCccCCEEECCCCcC
Confidence            9999999866666788999999999999999877777788999999999999999853 455678899999999999999


Q ss_pred             cCCCChhhhhh
Q 030257          161 SGPIPSFILCK  171 (180)
Q Consensus       161 ~~~~~~~~~~~  171 (180)
                      .+..+..+..+
T Consensus       194 ~~~~~~~~~~l  204 (272)
T 3rfs_A          194 KSVPDGVFDRL  204 (272)
T ss_dssp             SCCCTTTTTTC
T ss_pred             CccCHHHHhCC
Confidence            97666555444

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=3.4e-21  Score=136.52  Aligned_cols=163  Identities=24%  Similarity=0.239  Sum_probs=106.8

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   81 (180)
                      ++++.|++++|.+. .++...+.++++|++|++++|.+... +. ...+++|++|++++|.+. ..|..+..+++|++|+
T Consensus        31 ~~l~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~  106 (290)
T 1p9a_G           31 KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD  106 (290)
T ss_dssp             TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEE
T ss_pred             CCCCEEEcCCCcCC-ccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEE
Confidence            35667777777765 34444445577777777777776632 22 256677777777777766 4455566777777777


Q ss_pred             eeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCccc
Q 030257           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS  161 (180)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  161 (180)
                      +++|.++...+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++.. .+..+..+++|+.|++++|.+.
T Consensus       107 l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~l~~L~~L~L~~N~l~  185 (290)
T 1p9a_G          107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL-PAGLLNGLENLDTLLLQENSLY  185 (290)
T ss_dssp             CCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC-CTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc-CHHHhcCcCCCCEEECCCCcCC
Confidence            777777655555677777777777777777765556666777777777777777632 3344566777777777777776


Q ss_pred             CCCChhhhh
Q 030257          162 GPIPSFILC  170 (180)
Q Consensus       162 ~~~~~~~~~  170 (180)
                       .+|..+..
T Consensus       186 -~ip~~~~~  193 (290)
T 1p9a_G          186 -TIPKGFFG  193 (290)
T ss_dssp             -CCCTTTTT
T ss_pred             -ccChhhcc
Confidence             45555443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.87  E-value=1.7e-21  Score=138.93  Aligned_cols=164  Identities=21%  Similarity=0.196  Sum_probs=141.4

Q ss_pred             CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEeccccccc-ccchhhhccCCccE
Q 030257            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSG-TIPKEIGNVTKLIR   79 (180)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~   79 (180)
                      +++|++|++++|.+.+..+...+.++++|++|++++|.+....+..+..+++|++|++++|.+.. ..+..+..+++|++
T Consensus       100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  179 (306)
T 2z66_A          100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF  179 (306)
T ss_dssp             CTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred             CCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCE
Confidence            57899999999999843333566679999999999999987788889999999999999999875 57788899999999


Q ss_pred             EEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCC-CCccEEEccCC
Q 030257           80 LYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQ-SSLQTLYLSYN  158 (180)
Q Consensus        80 l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~L~~l~l~~n  158 (180)
                      |++++|.+....+..+..+++|+.+++++|.+.+..+..+..+++|++|++++|.+++. .+..+..+ ++|+.|++++|
T Consensus       180 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~~~~~L~~L~L~~N  258 (306)
T 2z66_A          180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS-KKQELQHFPSSLAFLNLTQN  258 (306)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC-SSSSCCCCCTTCCEEECTTC
T ss_pred             EECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc-CHHHHHhhhccCCEEEccCC
Confidence            99999999876678889999999999999999876667788999999999999999864 55666776 48999999999


Q ss_pred             cccCCCC
Q 030257          159 QLSGPIP  165 (180)
Q Consensus       159 ~~~~~~~  165 (180)
                      ++....+
T Consensus       259 ~~~~~c~  265 (306)
T 2z66_A          259 DFACTCE  265 (306)
T ss_dssp             CEECSGG
T ss_pred             CeecccC
Confidence            9976543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.87  E-value=3e-21  Score=144.45  Aligned_cols=40  Identities=20%  Similarity=0.237  Sum_probs=23.1

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCC
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHG   41 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~   41 (180)
                      ++|++|++++|.+.+..|..++.++++|++|++++|.+.+
T Consensus       129 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  168 (455)
T 3v47_A          129 TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS  168 (455)
T ss_dssp             TTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred             ccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence            4566666666666544444444556666666666665543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.87  E-value=1.2e-21  Score=137.85  Aligned_cols=133  Identities=20%  Similarity=0.215  Sum_probs=84.4

Q ss_pred             CceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEe
Q 030257            3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL   82 (180)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l   82 (180)
                      ++++|++++|.+. .++...+.++++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|++
T Consensus        29 ~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           29 STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            4677777777765 444444445777777777777766555556666777777777777766555556666666777776


Q ss_pred             eCCcCCCCcchhhcCCCcccEEEecCCcCCCC-ccccccCCCCCCeEEcccCcCC
Q 030257           83 RGNQLQGEIPEELGNLAELEMLWLQNNFLTRA-IPSSIFNLSSLSNLDLSVNNLT  136 (180)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~  136 (180)
                      .+|.+....+..+..+++|+.+++++|.+.+. .+..+..+++|++|++++|.++
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~  162 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  162 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence            66666544343456666666666666666542 3555666666666666666554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.87  E-value=4.3e-22  Score=142.49  Aligned_cols=164  Identities=23%  Similarity=0.242  Sum_probs=85.1

Q ss_pred             CCceEEEeeCCeecccCchhhh-hcCCCccEEEcccccCCCCCCccccCC-----CCccEEEecccccccccchhhhccC
Q 030257            2 SSLLSIRFTNNTLFGELPPNFC-NHLSNLESLFLKNNMFHGKIPSTLSNC-----KRLRNISLSLDDFSGTIPKEIGNVT   75 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~l~   75 (180)
                      ++|++|++++|.+.+.+|..++ ..+++|++|++++|.+.+. |..+..+     ++|++|++++|.+....+..+..++
T Consensus        95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~  173 (312)
T 1wwl_A           95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP  173 (312)
T ss_dssp             SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred             CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence            4566667766666655555542 4466666666666666543 4444444     5666666666666555545555666


Q ss_pred             CccEEEeeCCcCCCC--cchhh--cCCCcccEEEecCCcCCCC--cc-ccccCCCCCCeEEcccCcCCCCCCcccccCCC
Q 030257           76 KLIRLYLRGNQLQGE--IPEEL--GNLAELEMLWLQNNFLTRA--IP-SSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQS  148 (180)
Q Consensus        76 ~L~~l~l~~~~~~~~--~~~~~--~~~~~L~~l~l~~~~~~~~--~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  148 (180)
                      +|++|++++|.+...  .+..+  ..+++|+.|++++|.+.+.  .+ ..+..+++|++|++++|.+++......+..++
T Consensus       174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~  253 (312)
T 1wwl_A          174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS  253 (312)
T ss_dssp             SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred             CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence            666666666654321  12222  4455555555555555421  11 22234455555555555554321112233345


Q ss_pred             CccEEEccCCcccCCCChh
Q 030257          149 SLQTLYLSYNQLSGPIPSF  167 (180)
Q Consensus       149 ~L~~l~l~~n~~~~~~~~~  167 (180)
                      +|+.|++++|.++ .+|..
T Consensus       254 ~L~~L~Ls~N~l~-~ip~~  271 (312)
T 1wwl_A          254 QLNSLNLSFTGLK-QVPKG  271 (312)
T ss_dssp             TCCEEECTTSCCS-SCCSS
T ss_pred             CCCEEECCCCccC-hhhhh
Confidence            5555555555554 34433

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.87  E-value=4.4e-21  Score=130.82  Aligned_cols=154  Identities=23%  Similarity=0.269  Sum_probs=131.7

Q ss_pred             eEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeC
Q 030257            5 LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG   84 (180)
Q Consensus         5 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~   84 (180)
                      +.+++.++.+. .+|..+.   +++++|++++|.+....+..|..+++|+.|++++|.+....+..+..+++|++|++++
T Consensus        14 ~~v~c~~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             CEEEcCCCCcC-cCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            35677777776 6776553   6899999999999876677889999999999999999988788999999999999999


Q ss_pred             CcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCC
Q 030257           85 NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGP  163 (180)
Q Consensus        85 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~  163 (180)
                      |.++...+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++. .+..+..+++|+.+++++|++...
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTI-AKGTFSPLRAIQTMHLAQNPFICD  167 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCEECS
T ss_pred             CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEE-CHHHHhCCCCCCEEEeCCCCcCCC
Confidence            999865555678899999999999999988788899999999999999999853 455678899999999999998653

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.87  E-value=3.6e-21  Score=143.68  Aligned_cols=164  Identities=22%  Similarity=0.226  Sum_probs=101.1

Q ss_pred             CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (180)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   80 (180)
                      +++|++|++++|.+. .++...+.++++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|
T Consensus        87 l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L  165 (440)
T 3zyj_A           87 LRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRL  165 (440)
T ss_dssp             CSSCCEEECCSSCCC-EECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCcCC-ccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEe
Confidence            467778888887776 4555555667778888888777775555567777777777777777664444445555555555


Q ss_pred             EeeC-------------------------CcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcC
Q 030257           81 YLRG-------------------------NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNL  135 (180)
Q Consensus        81 ~l~~-------------------------~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  135 (180)
                      ++.+                         |.+.. .| .+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus       166 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l  243 (440)
T 3zyj_A          166 DLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI  243 (440)
T ss_dssp             ECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             CCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCce
Confidence            5544                         44331 12 234445555555555555544455566666666666666666


Q ss_pred             CCCCCcccccCCCCccEEEccCCcccCCCChhh
Q 030257          136 TGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFI  168 (180)
Q Consensus       136 ~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~  168 (180)
                      ++. .+..+..+++|+.|++++|.+++..+..+
T Consensus       244 ~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  275 (440)
T 3zyj_A          244 QVI-ERNAFDNLQSLVEINLAHNNLTLLPHDLF  275 (440)
T ss_dssp             CEE-CTTSSTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred             eEE-ChhhhcCCCCCCEEECCCCCCCccChhHh
Confidence            532 34456667777777777777775444443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.87  E-value=2.5e-21  Score=144.86  Aligned_cols=163  Identities=21%  Similarity=0.295  Sum_probs=139.3

Q ss_pred             CCceEEEeeCCeecccCchhhhhc--------------------------------------CCCccEEEcccccCCCCC
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNH--------------------------------------LSNLESLFLKNNMFHGKI   43 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~--------------------------------------l~~L~~L~l~~~~~~~~~   43 (180)
                      ++|++|++++|.+.+..+..+...                                      .++|++|++++|.+.+..
T Consensus       212 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  291 (455)
T 3v47_A          212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL  291 (455)
T ss_dssp             CEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC
T ss_pred             ceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccc
Confidence            568888888888765555444321                                      257889999999888777


Q ss_pred             CccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCC
Q 030257           44 PSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLS  123 (180)
Q Consensus        44 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~  123 (180)
                      +..+..+++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+..++
T Consensus       292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  371 (455)
T 3v47_A          292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP  371 (455)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             hhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccc
Confidence            88899999999999999999977788899999999999999999866778889999999999999999877788899999


Q ss_pred             CCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCCC
Q 030257          124 SLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIP  165 (180)
Q Consensus       124 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  165 (180)
                      +|++|++++|.+++. .+..+..+++|+.|++++|+++...|
T Consensus       372 ~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          372 NLKELALDTNQLKSV-PDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             TCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             cccEEECCCCccccC-CHhHhccCCcccEEEccCCCcccCCC
Confidence            999999999999853 44567889999999999999998887

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.87  E-value=1.3e-21  Score=151.11  Aligned_cols=158  Identities=23%  Similarity=0.180  Sum_probs=71.0

Q ss_pred             CceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEeccccccc-ccchhhhccCCccEEE
Q 030257            3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSG-TIPKEIGNVTKLIRLY   81 (180)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~l~   81 (180)
                      +|++|++++|.+.+..+...+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.. ..+..+..+++|++|+
T Consensus       400 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  479 (606)
T 3vq2_A          400 ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD  479 (606)
T ss_dssp             TCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred             CCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEE
Confidence            344444444444322222233334444444444444443344444444444444444444443 2334444445555555


Q ss_pred             eeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCC-CccEEEccCCcc
Q 030257           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQS-SLQTLYLSYNQL  160 (180)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~l~l~~n~~  160 (180)
                      +++|.+....|..+..+++|+.+++++|.+.+..|..+..+++|++|++++|.++  .++..+..++ +|+.+++++|++
T Consensus       480 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~--~~p~~~~~l~~~L~~l~l~~N~~  557 (606)
T 3vq2_A          480 LSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE--TSKGILQHFPKSLAFFNLTNNSV  557 (606)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC--CEESCGGGSCTTCCEEECCSCCC
T ss_pred             CCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc--ccCHhHhhhcccCcEEEccCCCc
Confidence            5555444333444444455555555555554444444444555555555555444  1333333333 355555555554


Q ss_pred             cC
Q 030257          161 SG  162 (180)
Q Consensus       161 ~~  162 (180)
                      ..
T Consensus       558 ~c  559 (606)
T 3vq2_A          558 AC  559 (606)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.87  E-value=1.6e-21  Score=137.21  Aligned_cols=165  Identities=22%  Similarity=0.254  Sum_probs=121.3

Q ss_pred             CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (180)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   80 (180)
                      +++|++|++++|.+. .++...+.++++|++|++++|.+....+..+..+++|++|++.+|.+....+..+..+++|++|
T Consensus        51 l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  129 (276)
T 2z62_A           51 FPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL  129 (276)
T ss_dssp             CTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEE
T ss_pred             ccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEE
Confidence            467888888888876 5565555668888888888888876666778888888888888888876555567788888888


Q ss_pred             EeeCCcCCCC-cchhhcCCCcccEEEecCCcCCCCccccccCCCCCC----eEEcccCcCCCCCCcccccCCCCccEEEc
Q 030257           81 YLRGNQLQGE-IPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLS----NLDLSVNNLTGGIIPSLLGNQSSLQTLYL  155 (180)
Q Consensus        81 ~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~~L~~l~l  155 (180)
                      ++++|.+... .|..+..+++|+.+++++|.+.+..+..+..+++++    .+++++|.+++  ++.......+|+.|++
T Consensus       130 ~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~--~~~~~~~~~~L~~L~L  207 (276)
T 2z62_A          130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF--IQPGAFKEIRLKELAL  207 (276)
T ss_dssp             ECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCE--ECTTSSCSCCEEEEEC
T ss_pred             ECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccc--cCccccCCCcccEEEC
Confidence            8888887653 467788888888888888888765555665555555    78888888773  3333334457888888


Q ss_pred             cCCcccCCCChhh
Q 030257          156 SYNQLSGPIPSFI  168 (180)
Q Consensus       156 ~~n~~~~~~~~~~  168 (180)
                      ++|.+++..+..+
T Consensus       208 ~~n~l~~~~~~~~  220 (276)
T 2z62_A          208 DTNQLKSVPDGIF  220 (276)
T ss_dssp             CSSCCSCCCTTTT
T ss_pred             CCCceeecCHhHh
Confidence            8888875444333

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.87  E-value=7.6e-21  Score=129.66  Aligned_cols=156  Identities=23%  Similarity=0.247  Sum_probs=134.8

Q ss_pred             eEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCC-ccccCCCCccEEEecccccccccchhhhccCCccEEEee
Q 030257            5 LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIP-STLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR   83 (180)
Q Consensus         5 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~   83 (180)
                      +.++++++.+. .+|..+.   ..+++|++++|.+....+ ..|..+++|+.|++++|.+....+..+..+++|++|+++
T Consensus        14 ~~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence            47888888886 6787663   456899999999985533 457899999999999999997777789999999999999


Q ss_pred             CCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCC
Q 030257           84 GNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGP  163 (180)
Q Consensus        84 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~  163 (180)
                      +|.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++. .+..+..+++|+.|++++|++...
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV-APGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCB-CTTTTTTCTTCCEEECCSCCEECS
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEE-CHHHhcCCCCCCEEEecCcCCcCC
Confidence            9999877777799999999999999999987788899999999999999999853 567788899999999999998866


Q ss_pred             CC
Q 030257          164 IP  165 (180)
Q Consensus       164 ~~  165 (180)
                      .+
T Consensus       169 c~  170 (220)
T 2v70_A          169 CY  170 (220)
T ss_dssp             GG
T ss_pred             Cc
Confidence            55

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.87  E-value=8.9e-21  Score=134.39  Aligned_cols=157  Identities=25%  Similarity=0.273  Sum_probs=137.8

Q ss_pred             CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (180)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   80 (180)
                      +++|++|++++|.+. .++..  ..+++|++|++++|.+. ..|..+..+++|++|++++|.+....+..+..+++|++|
T Consensus        54 l~~L~~L~L~~n~l~-~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L  129 (290)
T 1p9a_G           54 YTRLTQLNLDRAELT-KLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL  129 (290)
T ss_dssp             CTTCCEEECTTSCCC-EEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCccC-cccCC--CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEE
Confidence            578999999999987 45443  46999999999999998 777888999999999999999997777889999999999


Q ss_pred             EeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcc
Q 030257           81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQL  160 (180)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~  160 (180)
                      ++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++  .++..+.....|+.+++++|++
T Consensus       130 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~--~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY--TIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCCCSEEECCSCCB
T ss_pred             ECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC--ccChhhcccccCCeEEeCCCCc
Confidence            99999998666667888999999999999998766677888999999999999998  4677777888999999999998


Q ss_pred             cCC
Q 030257          161 SGP  163 (180)
Q Consensus       161 ~~~  163 (180)
                      ...
T Consensus       208 ~C~  210 (290)
T 1p9a_G          208 LCN  210 (290)
T ss_dssp             CCS
T ss_pred             cCc
Confidence            643

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.86  E-value=7.6e-21  Score=139.83  Aligned_cols=134  Identities=24%  Similarity=0.277  Sum_probs=82.0

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   81 (180)
                      ++++.+++.++.+. .+|..++.++++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|+
T Consensus        45 ~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           45 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             CCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            45666666666665 56666666666677777766666644455666666666666666666655555566666666666


Q ss_pred             eeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCC
Q 030257           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT  136 (180)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  136 (180)
                      +.+|.+....+..+..+++|+.+++++|.+.+..+..+..+++|++|++++|.++
T Consensus       124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  178 (390)
T 3o6n_A          124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT  178 (390)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred             CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence            6666665333333455666666666666665544555555666666666665544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.86  E-value=4.4e-21  Score=143.65  Aligned_cols=164  Identities=23%  Similarity=0.249  Sum_probs=98.6

Q ss_pred             CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (180)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   80 (180)
                      +++|++|++++|.+. .++...+.++++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|
T Consensus        98 l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  176 (452)
T 3zyi_A           98 LHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRL  176 (452)
T ss_dssp             CTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCccC-CcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEE
Confidence            456777777777776 4454555557777777777777765555556667777777777776664444444444444444


Q ss_pred             Ee-------------------------eCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcC
Q 030257           81 YL-------------------------RGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNL  135 (180)
Q Consensus        81 ~l-------------------------~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  135 (180)
                      ++                         ++|.+.. .| .+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus       177 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l  254 (452)
T 3zyi_A          177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV  254 (452)
T ss_dssp             ECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCC
T ss_pred             eCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcC
Confidence            44                         4444432 11 234445555566666655554455666666677777776666


Q ss_pred             CCCCCcccccCCCCccEEEccCCcccCCCChhh
Q 030257          136 TGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFI  168 (180)
Q Consensus       136 ~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~  168 (180)
                      ++. .+..+..+++|+.|++++|.+++..+..+
T Consensus       255 ~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  286 (452)
T 3zyi_A          255 SLI-ERNAFDGLASLVELNLAHNNLSSLPHDLF  286 (452)
T ss_dssp             CEE-CTTTTTTCTTCCEEECCSSCCSCCCTTSS
T ss_pred             ceE-CHHHhcCCCCCCEEECCCCcCCccChHHh
Confidence            532 34556667777777777777764444333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.86  E-value=2e-21  Score=146.32  Aligned_cols=164  Identities=20%  Similarity=0.164  Sum_probs=112.8

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   81 (180)
                      ++++.|++++|.+. .++...+.++++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|+
T Consensus        32 ~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  110 (477)
T 2id5_A           32 TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD  110 (477)
T ss_dssp             TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred             CCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence            45777888887776 44444555578888888888777766677777778888888887777755555667777777887


Q ss_pred             eeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCccc
Q 030257           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS  161 (180)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  161 (180)
                      +++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++. .+..+..+++|+.|++++|.+.
T Consensus       111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~i~  189 (477)
T 2id5_A          111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI-PTEALSHLHGLIVLRLRHLNIN  189 (477)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC-CHHHHTTCTTCCEEEEESCCCC
T ss_pred             CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc-ChhHhcccCCCcEEeCCCCcCc
Confidence            777777655566677777777777777777665566667777777777777776632 3344556666666666666665


Q ss_pred             CCCChh
Q 030257          162 GPIPSF  167 (180)
Q Consensus       162 ~~~~~~  167 (180)
                      +..+..
T Consensus       190 ~~~~~~  195 (477)
T 2id5_A          190 AIRDYS  195 (477)
T ss_dssp             EECTTC
T ss_pred             EeChhh
Confidence            444333

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.86  E-value=1.2e-20  Score=140.91  Aligned_cols=163  Identities=24%  Similarity=0.229  Sum_probs=121.7

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   81 (180)
                      ++++.|++++|.+. .++...+.++++|++|++++|.+....+..|.++++|++|++++|.+....+..+..+++|++|+
T Consensus        64 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  142 (440)
T 3zyj_A           64 TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW  142 (440)
T ss_dssp             TTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred             CCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence            46899999999987 56666667799999999999999877778899999999999999999877777899999999999


Q ss_pred             eeCCcCCCCcchhhcCCCcccEEEecCCcCCCCc-cccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcc
Q 030257           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAI-PSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQL  160 (180)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~  160 (180)
                      +++|.+....+..+..+++|+.|++++|...+.+ +..+..+++|++|++++|.+++  ++ .+..+++|+.|++++|.+
T Consensus       143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~~-~~~~l~~L~~L~Ls~N~l  219 (440)
T 3zyj_A          143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--IP-NLTPLIKLDELDLSGNHL  219 (440)
T ss_dssp             CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS--CC-CCTTCSSCCEEECTTSCC
T ss_pred             CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc--cc-ccCCCcccCEEECCCCcc
Confidence            9999987555556777788888888774433333 3356666667777666666652  23 244555566666666655


Q ss_pred             cCCCChhh
Q 030257          161 SGPIPSFI  168 (180)
Q Consensus       161 ~~~~~~~~  168 (180)
                      ++..+..+
T Consensus       220 ~~~~~~~~  227 (440)
T 3zyj_A          220 SAIRPGSF  227 (440)
T ss_dssp             CEECTTTT
T ss_pred             CccChhhh
Confidence            54444443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.86  E-value=1.4e-20  Score=126.29  Aligned_cols=151  Identities=18%  Similarity=0.230  Sum_probs=125.0

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   81 (180)
                      ++|+.|++++|.+. .++ . +..+++|++|++++|.+.  ....+..+++|++|++++|.+....+..+..+++|++|+
T Consensus        44 ~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           44 NSLTYITLANINVT-DLT-G-IEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HTCCEEEEESSCCS-CCT-T-GGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             CCccEEeccCCCcc-ChH-H-HhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            57899999999987 666 3 455999999999999765  334688899999999999999876778889999999999


Q ss_pred             eeCCcCCCCcchhhcCCCcccEEEecCCc-CCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcc
Q 030257           82 LRGNQLQGEIPEELGNLAELEMLWLQNNF-LTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQL  160 (180)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~  160 (180)
                      +++|.+....+..+..+++|+.|++++|. +.+ .+ .+..+++|++|++++|.+++  ++ .+..+++|+.|++++|++
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~--~~-~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHD--YR-GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCC--CT-TGGGCSSCCEEEECBC--
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcC--hH-HhccCCCCCEEEeeCccc
Confidence            99999886678888999999999999998 654 44 67889999999999999985  33 677889999999999987


Q ss_pred             cC
Q 030257          161 SG  162 (180)
Q Consensus       161 ~~  162 (180)
                      .+
T Consensus       194 ~~  195 (197)
T 4ezg_A          194 GG  195 (197)
T ss_dssp             --
T ss_pred             CC
Confidence            63

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.86  E-value=1.2e-20  Score=142.00  Aligned_cols=110  Identities=21%  Similarity=0.207  Sum_probs=56.0

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   81 (180)
                      ++|++|++++|.+.+ ++...+.++++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|+
T Consensus        56 ~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  134 (477)
T 2id5_A           56 PHLEELELNENIVSA-VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE  134 (477)
T ss_dssp             TTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCccCE-eChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEE
Confidence            456666666665552 3233333466666666666655533334455555555555555555544444455555555555


Q ss_pred             eeCCcCCCCcchhhcCCCcccEEEecCCcCC
Q 030257           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLT  112 (180)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~  112 (180)
                      +.+|.+....+..+..+++|+.|++++|.+.
T Consensus       135 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  165 (477)
T 2id5_A          135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLT  165 (477)
T ss_dssp             ECCTTCCEECTTSSTTCTTCCEEEEESCCCS
T ss_pred             CCCCccceeChhhccCCCCCCEEECCCCcCc
Confidence            5555444333334444444444444444444

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.86  E-value=1.2e-21  Score=142.47  Aligned_cols=163  Identities=20%  Similarity=0.219  Sum_probs=112.7

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   81 (180)
                      ++|++|++++|.+. .++...+.++++|++|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|++|+
T Consensus        52 ~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  130 (353)
T 2z80_A           52 EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN  130 (353)
T ss_dssp             TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred             ccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence            46778888888776 45655555688888888888877766666777788888888888877755555577778888888


Q ss_pred             eeCCcCCCCcc-hhhcCCCcccEEEecCCc-CCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCc
Q 030257           82 LRGNQLQGEIP-EELGNLAELEMLWLQNNF-LTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQ  159 (180)
Q Consensus        82 l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~  159 (180)
                      +++|.+..... ..+..+++|+.+++++|. +.+..+..+..+++|++|++++|.+.+. .+..+..+++|+.|++++|.
T Consensus       131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~  209 (353)
T 2z80_A          131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY-EPKSLKSIQNVSHLILHMKQ  209 (353)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE-CTTTTTTCSEEEEEEEECSC
T ss_pred             CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc-CHHHHhccccCCeecCCCCc
Confidence            88877764333 356677788888887773 4444455667777777777777777642 45556666677777777776


Q ss_pred             ccCCCChh
Q 030257          160 LSGPIPSF  167 (180)
Q Consensus       160 ~~~~~~~~  167 (180)
                      +. .++..
T Consensus       210 l~-~~~~~  216 (353)
T 2z80_A          210 HI-LLLEI  216 (353)
T ss_dssp             ST-THHHH
T ss_pred             cc-cchhh
Confidence            64 34443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.86  E-value=7.9e-21  Score=142.27  Aligned_cols=163  Identities=20%  Similarity=0.200  Sum_probs=116.8

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   81 (180)
                      +++++|++++|.+. .++...+.++++|++|++++|.+....+..|.++++|++|++++|.+....+..+..+++|++|+
T Consensus        75 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  153 (452)
T 3zyi_A           75 SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW  153 (452)
T ss_dssp             TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred             CCccEEECcCCcCc-eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence            47899999999987 45555666799999999999999977778899999999999999999877777789999999999


Q ss_pred             eeCCcCCCCcchhhcCCCcccEEEecCCcCCCCcc-ccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcc
Q 030257           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIP-SSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQL  160 (180)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~  160 (180)
                      +++|.+....+..+..+++|+.|++++|...+.++ ..+..+++|++|++++|.+++  ++ .+..+++|+.|++++|.+
T Consensus       154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~~-~~~~l~~L~~L~Ls~N~l  230 (452)
T 3zyi_A          154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--MP-NLTPLVGLEELEMSGNHF  230 (452)
T ss_dssp             CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS--CC-CCTTCTTCCEEECTTSCC
T ss_pred             CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc--cc-cccccccccEEECcCCcC
Confidence            99999875545566777777777777643322222 345556666666666665552  22 234445555555555555


Q ss_pred             cCCCChhh
Q 030257          161 SGPIPSFI  168 (180)
Q Consensus       161 ~~~~~~~~  168 (180)
                      .+..|..+
T Consensus       231 ~~~~~~~~  238 (452)
T 3zyi_A          231 PEIRPGSF  238 (452)
T ss_dssp             SEECGGGG
T ss_pred             cccCcccc
Confidence            44444433

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.86  E-value=3.3e-21  Score=140.07  Aligned_cols=134  Identities=22%  Similarity=0.221  Sum_probs=70.4

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCC-ccccCCCCccEEEeccc-ccccccchhhhccCCccE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIP-STLSNCKRLRNISLSLD-DFSGTIPKEIGNVTKLIR   79 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~   79 (180)
                      ++|++|++++|.+. .++...+.++++|++|++++|.+..... ..+..+++|++|++++| .+....+..+..+++|++
T Consensus       100 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~  178 (353)
T 2z80_A          100 GSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEE  178 (353)
T ss_dssp             TTCCEEECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred             CCCCEEECCCCcCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCE
Confidence            45666666666655 4555544556666666666666553222 24556666666666665 244344445556666666


Q ss_pred             EEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCC
Q 030257           80 LYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT  136 (180)
Q Consensus        80 l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  136 (180)
                      +++++|.+....+..+..+++|+.+++++|.+.......+..+++|+.|++++|.++
T Consensus       179 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~  235 (353)
T 2z80_A          179 LEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLD  235 (353)
T ss_dssp             EEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCT
T ss_pred             EECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccc
Confidence            666666655444555555555555555555443211112222344444444444443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=6e-21  Score=131.67  Aligned_cols=151  Identities=17%  Similarity=0.299  Sum_probs=87.0

Q ss_pred             CceEEEeeCCeecccCchhhhhcCCCccEEEccccc-CCCCCCccccCCCCccEEEecc-cccccccchhhhccCCccEE
Q 030257            3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNM-FHGKIPSTLSNCKRLRNISLSL-DDFSGTIPKEIGNVTKLIRL   80 (180)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~l   80 (180)
                      ++++|++++|.+. .++...+.++++|++|++++|. +....+..|..+++|++|++++ |.+....+..+..+++|+++
T Consensus        32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            5677777777765 4555555557777777777775 5544445666777777777776 66665555566666777777


Q ss_pred             EeeCCcCCCCcchhhcCCCccc---EEEecCC-cCCCCccccccCCCCCC-eEEcccCcCCCCCCcccccCCCCccEEEc
Q 030257           81 YLRGNQLQGEIPEELGNLAELE---MLWLQNN-FLTRAIPSSIFNLSSLS-NLDLSVNNLTGGIIPSLLGNQSSLQTLYL  155 (180)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~L~---~l~l~~~-~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~l~l  155 (180)
                      ++.+|.+.. .|. +..+++|+   .+++++| .+.+..+..+..+++|+ .+++++|.++.  ++......++|+.|++
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~--i~~~~~~~~~L~~L~L  186 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS--VQGYAFNGTKLDAVYL  186 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE--ECTTTTTTCEEEEEEC
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc--cCHhhcCCCCCCEEEc
Confidence            777666553 333 44555555   6666665 55443334455555555 55555555541  2221111244555555


Q ss_pred             cCC
Q 030257          156 SYN  158 (180)
Q Consensus       156 ~~n  158 (180)
                      ++|
T Consensus       187 ~~n  189 (239)
T 2xwt_C          187 NKN  189 (239)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            555

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.85  E-value=3.1e-20  Score=127.37  Aligned_cols=155  Identities=23%  Similarity=0.258  Sum_probs=131.9

Q ss_pred             eEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeC
Q 030257            5 LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG   84 (180)
Q Consensus         5 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~   84 (180)
                      +.++++++.+. .+|..+   .++|++|++++|.+.+..+..|..+++|+.|++++|.+....+..+..+++|++|++++
T Consensus        22 ~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           22 TTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            45777777765 677665   37899999999999987788899999999999999999866667788999999999999


Q ss_pred             CcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCC
Q 030257           85 NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPI  164 (180)
Q Consensus        85 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~  164 (180)
                      |.++...+..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+++. .+..+..+++|+.|++++|++....
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSI-PHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCcc-CHHHHhCCCCCCEEEeeCCCccCCc
Confidence            9998666666888999999999999998 5777888999999999999999843 4456788999999999999988665


Q ss_pred             C
Q 030257          165 P  165 (180)
Q Consensus       165 ~  165 (180)
                      +
T Consensus       176 ~  176 (229)
T 3e6j_A          176 R  176 (229)
T ss_dssp             G
T ss_pred             c
Confidence            4

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.85  E-value=5.7e-20  Score=124.21  Aligned_cols=156  Identities=21%  Similarity=0.203  Sum_probs=131.6

Q ss_pred             eEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeC
Q 030257            5 LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG   84 (180)
Q Consensus         5 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~   84 (180)
                      +.+++.++.+. .+|..+   .+++++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|++++
T Consensus        10 ~~v~c~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCcc-CCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence            35666666665 566555   46899999999999866666788999999999999999877666788999999999999


Q ss_pred             CcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCC
Q 030257           85 NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPI  164 (180)
Q Consensus        85 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~  164 (180)
                      |.+....+..+..+++|+.+++++|.+.+..+..+..+++|++|++++|.+++. .+..+..+++|+.+++++|++....
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~~~~  164 (208)
T 2o6s_A           86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYIWLHDNPWDCTC  164 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSCCBCCCT
T ss_pred             CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcccee-CHHHhccCCCccEEEecCCCeecCC
Confidence            999866566688999999999999999877677788999999999999999853 4455788999999999999988766


Q ss_pred             C
Q 030257          165 P  165 (180)
Q Consensus       165 ~  165 (180)
                      +
T Consensus       165 ~  165 (208)
T 2o6s_A          165 P  165 (208)
T ss_dssp             T
T ss_pred             C
Confidence            5

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.85  E-value=9.4e-21  Score=146.37  Aligned_cols=174  Identities=20%  Similarity=0.164  Sum_probs=149.6

Q ss_pred             CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCC-ccccCCCCccEEEecccccccccchhhhccCCccE
Q 030257            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIP-STLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIR   79 (180)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   79 (180)
                      +++|++|++++|.+. .+|.. +.++++|++|++++|.+.+..+ ..+..+++|++|++++|.+....+..+..+++|++
T Consensus       375 ~~~L~~L~L~~n~l~-~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  452 (606)
T 3vq2_A          375 TNSLRHLDLSFNGAI-IMSAN-FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNT  452 (606)
T ss_dssp             CSCCCEEECCSCSEE-EECCC-CTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCE
T ss_pred             CCcccEeECCCCccc-cchhh-ccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCE
Confidence            578999999999987 56644 4559999999999999986666 67889999999999999998888888999999999


Q ss_pred             EEeeCCcCCCC-cchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCC
Q 030257           80 LYLRGNQLQGE-IPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYN  158 (180)
Q Consensus        80 l~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n  158 (180)
                      +++.+|.+... .|..+..+++|+.+++++|.+.+..+..+..+++|++|++++|.+++. .+..+..+++|+.|++++|
T Consensus       453 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~l~~N  531 (606)
T 3vq2_A          453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFL-DSSHYNQLYSLSTLDCSFN  531 (606)
T ss_dssp             EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCE-EGGGTTTCTTCCEEECTTS
T ss_pred             EECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCc-CHHHccCCCcCCEEECCCC
Confidence            99999998753 577889999999999999999987788899999999999999999863 5778899999999999999


Q ss_pred             cccCCCChhhhhhccccccc
Q 030257          159 QLSGPIPSFILCKFSLLDNI  178 (180)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~l  178 (180)
                      .++ .+|..+....+.++.+
T Consensus       532 ~l~-~~p~~~~~l~~~L~~l  550 (606)
T 3vq2_A          532 RIE-TSKGILQHFPKSLAFF  550 (606)
T ss_dssp             CCC-CEESCGGGSCTTCCEE
T ss_pred             cCc-ccCHhHhhhcccCcEE
Confidence            998 5776666655445444

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.85  E-value=2.1e-20  Score=144.38  Aligned_cols=132  Identities=23%  Similarity=0.272  Sum_probs=63.9

Q ss_pred             CceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEe
Q 030257            3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL   82 (180)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l   82 (180)
                      +++.+++.++.+. .+|..++.++++|++|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|++|++
T Consensus        52 ~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  130 (597)
T 3oja_B           52 NQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  130 (597)
T ss_dssp             CCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence            4445555555443 444444444555555555555554444444555555555555555554444444445555555555


Q ss_pred             eCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcC
Q 030257           83 RGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNL  135 (180)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  135 (180)
                      ++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus       131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  183 (597)
T 3oja_B          131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL  183 (597)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCC
T ss_pred             eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCC
Confidence            55554432222334445555555555555444444444444444444444443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.85  E-value=4e-20  Score=136.02  Aligned_cols=68  Identities=22%  Similarity=0.155  Sum_probs=34.1

Q ss_pred             CcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCCChhhh
Q 030257           99 AELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFIL  169 (180)
Q Consensus        99 ~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~  169 (180)
                      ++|+.+++++|.+.+..+..+..+++|++|++++|.+++  ++..+..+++|+.|++++|.+. .+|..+.
T Consensus       248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~  315 (390)
T 3o6n_A          248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLL-HVERNQP  315 (390)
T ss_dssp             TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE--EECSSSCCTTCCEEECCSSCCC-CCGGGHH
T ss_pred             CCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc--cCcccCCCCCCCEEECCCCcce-ecCcccc
Confidence            344444444444443334444555555555555555542  3333445566666666666665 3444433

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.85  E-value=1.8e-20  Score=145.08  Aligned_cols=152  Identities=20%  Similarity=0.184  Sum_probs=112.8

Q ss_pred             cCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhc
Q 030257           17 ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELG   96 (180)
Q Consensus        17 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~   96 (180)
                      .+|.++   -+++++|++++|.+....+.+|.++++|++|++++|.+....++.|.++++|++|++++|.++...+..+.
T Consensus        45 ~vP~~l---p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~  121 (635)
T 4g8a_A           45 KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS  121 (635)
T ss_dssp             SCCSSS---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGT
T ss_pred             ccCCCC---CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhc
Confidence            455443   13678888888888766666788888888888888888766667788888888888888887755556677


Q ss_pred             CCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCCChhhhhh
Q 030257           97 NLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCK  171 (180)
Q Consensus        97 ~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~  171 (180)
                      ++++|+.|++++|.+.+..+..+.++++|++|++++|.++....+..+..+++|+.|++++|.+.+..+..+..+
T Consensus       122 ~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L  196 (635)
T 4g8a_A          122 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL  196 (635)
T ss_dssp             TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred             CCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccch
Confidence            888888888888888765556677888888888888877654456667777888888888888876666655443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.85  E-value=2.8e-21  Score=150.20  Aligned_cols=163  Identities=22%  Similarity=0.337  Sum_probs=128.5

Q ss_pred             CCCceEEEeeCCeeccc-----------------Cchhhh-hcCCCccEEEcccccCCCCCCccccCCCCccEEEecccc
Q 030257            1 MSSLLSIRFTNNTLFGE-----------------LPPNFC-NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDD   62 (180)
Q Consensus         1 l~~L~~L~l~~~~~~~~-----------------~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~   62 (180)
                      +++|++|++++|.+.+.                 +|..+. .++++|++|++++|.+.+..|..+..+++|++|++++|.
T Consensus       205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  284 (636)
T 4eco_A          205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR  284 (636)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred             ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence            57899999999998864                 777775 249999999999999998999999999999999999998


Q ss_pred             -ccc-ccchhhhcc------CCccEEEeeCCcCCCCcch--hhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEccc
Q 030257           63 -FSG-TIPKEIGNV------TKLIRLYLRGNQLQGEIPE--ELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSV  132 (180)
Q Consensus        63 -~~~-~~~~~~~~l------~~L~~l~l~~~~~~~~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~  132 (180)
                       ++. ..|..+..+      ++|++|++.+|.+. ..|.  .+..+++|+.+++++|.+.+.+| .+..+++|++|++++
T Consensus       285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~  362 (636)
T 4eco_A          285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAY  362 (636)
T ss_dssp             TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCS
T ss_pred             CCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCC
Confidence             775 677777776      89999999999988 6777  78899999999999998886666 666666666677766


Q ss_pred             CcCCCCCCcccccCCCC-ccEEEccCCcccCCCChhh
Q 030257          133 NNLTGGIIPSLLGNQSS-LQTLYLSYNQLSGPIPSFI  168 (180)
Q Consensus       133 ~~~~~~~~~~~~~~~~~-L~~l~l~~n~~~~~~~~~~  168 (180)
                      |.++  .++..+..+++ |+.|++++|.+. .+|..+
T Consensus       363 N~l~--~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~  396 (636)
T 4eco_A          363 NQIT--EIPANFCGFTEQVENLSFAHNKLK-YIPNIF  396 (636)
T ss_dssp             SEEE--ECCTTSEEECTTCCEEECCSSCCS-SCCSCC
T ss_pred             Cccc--cccHhhhhhcccCcEEEccCCcCc-ccchhh
Confidence            6665  34555555555 666666666665 455443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.85  E-value=1.2e-20  Score=145.84  Aligned_cols=135  Identities=23%  Similarity=0.219  Sum_probs=63.9

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCC--CccccCCCCccEEEecccccccccchhhhccCCccE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKI--PSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIR   79 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   79 (180)
                      ++|++|++.+|.+.+.++...+.++++|++|++++|.+....  +..+..+++|++|++++|.+....+..+..+++|++
T Consensus       325 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  404 (606)
T 3t6q_A          325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL  404 (606)
T ss_dssp             TTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSE
T ss_pred             CcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCe
Confidence            344444444444433334433334555555555555444222  334455555555555555554444444555555555


Q ss_pred             EEeeCCcCCCCcch-hhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCC
Q 030257           80 LYLRGNQLQGEIPE-ELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT  136 (180)
Q Consensus        80 l~l~~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  136 (180)
                      +++.+|.+....+. .+..+++|+.+++++|.+.+..+..+..+++|++|++++|.++
T Consensus       405 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  462 (606)
T 3t6q_A          405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP  462 (606)
T ss_dssp             EECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCG
T ss_pred             EECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCC
Confidence            55555544332222 2444555555555555554444444444555555555555443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.85  E-value=2.9e-20  Score=145.38  Aligned_cols=168  Identities=25%  Similarity=0.206  Sum_probs=142.6

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   81 (180)
                      +++++|++++|.+. .++...+.++++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|+
T Consensus        25 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  103 (680)
T 1ziw_A           25 TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH  103 (680)
T ss_dssp             TTCSEEECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred             CCCcEEECCCCCCC-CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence            47899999999987 56666666799999999999999988888899999999999999999866666799999999999


Q ss_pred             eeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccc--cCCCCccEEEccCCc
Q 030257           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLL--GNQSSLQTLYLSYNQ  159 (180)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~L~~l~l~~n~  159 (180)
                      +.+|.+....+..+..+++|+.+++++|.+.+..+..+.++++|++|++++|.+++. .+..+  ..+++|+.|++++|.
T Consensus       104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~~~L~~L~L~~n~  182 (680)
T 1ziw_A          104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL-KSEELDIFANSSLKKLELSSNQ  182 (680)
T ss_dssp             CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB-CHHHHGGGTTCEESEEECTTCC
T ss_pred             CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccccc-CHHHhhccccccccEEECCCCc
Confidence            999998866667889999999999999999888788888999999999999998753 33333  356899999999999


Q ss_pred             ccCCCChhhhhh
Q 030257          160 LSGPIPSFILCK  171 (180)
Q Consensus       160 ~~~~~~~~~~~~  171 (180)
                      +.+..|..+..+
T Consensus       183 l~~~~~~~~~~l  194 (680)
T 1ziw_A          183 IKEFSPGCFHAI  194 (680)
T ss_dssp             CCCBCTTGGGGS
T ss_pred             ccccChhhhhhh
Confidence            988777766544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.84  E-value=4.4e-20  Score=142.59  Aligned_cols=69  Identities=22%  Similarity=0.153  Sum_probs=36.8

Q ss_pred             CCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCCChhhh
Q 030257           98 LAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFIL  169 (180)
Q Consensus        98 ~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~  169 (180)
                      +++|+.|++++|.+.+..+..+..+++|+.|++++|.+++  ++..+..+++|+.|++++|.+. .+|..+.
T Consensus       253 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~  321 (597)
T 3oja_B          253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLL-HVERNQP  321 (597)
T ss_dssp             CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE--EECSSSCCTTCCEEECCSSCCC-CCGGGHH
T ss_pred             CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC--CCcccccCCCCcEEECCCCCCC-ccCcccc
Confidence            3444444555554444444455555556666665555542  3444445566666666666666 3554443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.84  E-value=3.1e-20  Score=143.47  Aligned_cols=140  Identities=25%  Similarity=0.250  Sum_probs=63.6

Q ss_pred             CCCccEEEcccccCCCCCCc-cccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCC---cchhhcCCCcc
Q 030257           26 LSNLESLFLKNNMFHGKIPS-TLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGE---IPEELGNLAEL  101 (180)
Q Consensus        26 l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~---~~~~~~~~~~L  101 (180)
                      +++|++|++++|.+....+. .+..+++|+.|++++|.+....+..+..+++|++|++++|.+...   .+..+..+++|
T Consensus       399 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L  478 (606)
T 3t6q_A          399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL  478 (606)
T ss_dssp             CTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTC
T ss_pred             CccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCc
Confidence            44444444444444322222 234444444444444444433344444444555555554444321   11234444455


Q ss_pred             cEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCCChh
Q 030257          102 EMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSF  167 (180)
Q Consensus       102 ~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~  167 (180)
                      +.+++++|.+.+..+..+..+++|++|++++|.+++. .+..+..++.| .|++++|.+++..|..
T Consensus       479 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~l~~L-~L~L~~N~l~~~~~~~  542 (606)
T 3t6q_A          479 EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS-SIEALSHLKGI-YLNLASNHISIILPSL  542 (606)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGG-GGGGGTTCCSC-EEECCSSCCCCCCGGG
T ss_pred             cEEECCCCccCccChhhhccccCCCEEECCCCccCcC-ChhHhCccccc-EEECcCCcccccCHhh
Confidence            5555555555444444445555555555555555432 34444455555 5555555555444433

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.84  E-value=6.2e-20  Score=132.20  Aligned_cols=160  Identities=23%  Similarity=0.297  Sum_probs=95.2

Q ss_pred             CceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCC--CCCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257            3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHG--KIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (180)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   80 (180)
                      +|++|++++|.+. .++...+.++++|++|++++|.+..  ..+..+..+++|+.|++++|.+.. .|..+  .++|+++
T Consensus       122 ~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~--~~~L~~L  197 (330)
T 1xku_A          122 TLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTEL  197 (330)
T ss_dssp             TCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSC--CTTCSEE
T ss_pred             cccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCccc--cccCCEE
Confidence            3444555444444 3344444456666666666665542  344455566666666666665542 22221  1456666


Q ss_pred             EeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcc
Q 030257           81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQL  160 (180)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~  160 (180)
                      ++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++  .++..+..+++|+.|++++|.+
T Consensus       198 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N~i  275 (330)
T 1xku_A          198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV--KVPGGLADHKYIQVVYLHNNNI  275 (330)
T ss_dssp             ECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS--SCCTTTTTCSSCCEEECCSSCC
T ss_pred             ECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc--cCChhhccCCCcCEEECCCCcC
Confidence            66666665444556667777777777777776555556666777777777777766  3555666677777777777777


Q ss_pred             cCCCChhh
Q 030257          161 SGPIPSFI  168 (180)
Q Consensus       161 ~~~~~~~~  168 (180)
                      ++..+..+
T Consensus       276 ~~~~~~~f  283 (330)
T 1xku_A          276 SAIGSNDF  283 (330)
T ss_dssp             CCCCTTSS
T ss_pred             CccChhhc
Confidence            65444443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.84  E-value=3.4e-20  Score=133.67  Aligned_cols=162  Identities=21%  Similarity=0.272  Sum_probs=88.5

Q ss_pred             CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (180)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   80 (180)
                      +++|++|++++|.+.+ ++...+.++++|++|++++|.+. ..|..+.  ++|++|++++|.+....+..+..+++|+++
T Consensus        77 l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L  152 (332)
T 2ft3_A           77 LQHLYALVLVNNKISK-IHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCI  152 (332)
T ss_dssp             CTTCCEEECCSSCCCE-ECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEE
T ss_pred             CCCCcEEECCCCccCc-cCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEE
Confidence            3567777777777663 33333344777777777776655 3332222  444444444444443333334444444444


Q ss_pred             EeeCC----------------------------------------------cCCCCcchhhcCCCcccEEEecCCcCCCC
Q 030257           81 YLRGN----------------------------------------------QLQGEIPEELGNLAELEMLWLQNNFLTRA  114 (180)
Q Consensus        81 ~l~~~----------------------------------------------~~~~~~~~~~~~~~~L~~l~l~~~~~~~~  114 (180)
                      ++.+|                                              .+....+..+..+++|+.+++++|.+.+.
T Consensus       153 ~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~  232 (332)
T 2ft3_A          153 EMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI  232 (332)
T ss_dssp             ECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCC
T ss_pred             ECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcC
Confidence            44444                                              33322333455555666666666666555


Q ss_pred             ccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCCChhh
Q 030257          115 IPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFI  168 (180)
Q Consensus       115 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~  168 (180)
                      .+..+..+++|++|++++|.++  .++..+..+++|+.|++++|.+++..+..+
T Consensus       233 ~~~~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~  284 (332)
T 2ft3_A          233 ENGSLSFLPTLRELHLDNNKLS--RVPAGLPDLKLLQVVYLHTNNITKVGVNDF  284 (332)
T ss_dssp             CTTGGGGCTTCCEEECCSSCCC--BCCTTGGGCTTCCEEECCSSCCCBCCTTSS
T ss_pred             ChhHhhCCCCCCEEECCCCcCe--ecChhhhcCccCCEEECCCCCCCccChhHc
Confidence            4555666666666666666665  355556666667777777776665444433

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=1.5e-20  Score=129.72  Aligned_cols=161  Identities=18%  Similarity=0.150  Sum_probs=132.1

Q ss_pred             CCCceEEEeeCCe-ecccCchhhhhcCCCccEEEccc-ccCCCCCCccccCCCCccEEEecccccccccchhhhccCCcc
Q 030257            1 MSSLLSIRFTNNT-LFGELPPNFCNHLSNLESLFLKN-NMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLI   78 (180)
Q Consensus         1 l~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   78 (180)
                      +++|++|++++|. +. .++...+.++++|++|++++ |.+....+..|..+++|++|++++|.+.. .|. +..+++|+
T Consensus        54 l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~  130 (239)
T 2xwt_C           54 LPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTD  130 (239)
T ss_dssp             CTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCC
T ss_pred             CCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccc
Confidence            5789999999997 65 67777777799999999998 88886666788999999999999999885 454 77888887


Q ss_pred             ---EEEeeCC-cCCCCcchhhcCCCccc-EEEecCCcCCCCccccccCCCCCCeEEcccCc-CCCCCCcccccCC-CCcc
Q 030257           79 ---RLYLRGN-QLQGEIPEELGNLAELE-MLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNN-LTGGIIPSLLGNQ-SSLQ  151 (180)
Q Consensus        79 ---~l~l~~~-~~~~~~~~~~~~~~~L~-~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~-~~L~  151 (180)
                         ++++++| .+....+..+..+++|+ .+++++|.+....+..+.. ++|++|++++|. +++ ..+..+..+ ++|+
T Consensus       131 ~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~-i~~~~~~~l~~~L~  208 (239)
T 2xwt_C          131 IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTV-IDKDAFGGVYSGPS  208 (239)
T ss_dssp             SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCE-ECTTTTTTCSBCCS
T ss_pred             cccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCccc-CCHHHhhccccCCc
Confidence               9999999 88765566788999999 9999999998433344444 899999999995 873 245567788 9999


Q ss_pred             EEEccCCcccCCCCh
Q 030257          152 TLYLSYNQLSGPIPS  166 (180)
Q Consensus       152 ~l~l~~n~~~~~~~~  166 (180)
                      .|++++|.+++..+.
T Consensus       209 ~L~l~~N~l~~l~~~  223 (239)
T 2xwt_C          209 LLDVSQTSVTALPSK  223 (239)
T ss_dssp             EEECTTCCCCCCCCT
T ss_pred             EEECCCCccccCChh
Confidence            999999999854433

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.84  E-value=3.3e-20  Score=132.74  Aligned_cols=159  Identities=23%  Similarity=0.189  Sum_probs=128.5

Q ss_pred             CCCceEEEeeCCeecccCchhhhhcC-----CCccEEEcccccCCCCCCccccCCCCccEEEecccccccc--cchhh--
Q 030257            1 MSSLLSIRFTNNTLFGELPPNFCNHL-----SNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGT--IPKEI--   71 (180)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~--   71 (180)
                      +++|++|++++|.+.+. |..+. .+     ++|++|++++|.+.+..+..+..+++|++|++++|.+...  .+..+  
T Consensus       120 l~~L~~L~Ls~N~l~~~-~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  197 (312)
T 1wwl_A          120 GPDLNILNLRNVSWATR-DAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP  197 (312)
T ss_dssp             SCCCSEEEEESCBCSSS-SSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred             CCCccEEEccCCCCcch-hHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence            47899999999999854 64443 35     8999999999999977778999999999999999986533  23334  


Q ss_pred             hccCCccEEEeeCCcCCCC--cc-hhhcCCCcccEEEecCCcCCCCcc-ccccCCCCCCeEEcccCcCCCCCCcccccCC
Q 030257           72 GNVTKLIRLYLRGNQLQGE--IP-EELGNLAELEMLWLQNNFLTRAIP-SSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQ  147 (180)
Q Consensus        72 ~~l~~L~~l~l~~~~~~~~--~~-~~~~~~~~L~~l~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~  147 (180)
                      ..+++|++|++++|.+...  .+ ..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.++  .++..+.  
T Consensus       198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~--~ip~~~~--  273 (312)
T 1wwl_A          198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK--QVPKGLP--  273 (312)
T ss_dssp             TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS--SCCSSCC--
T ss_pred             ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC--hhhhhcc--
Confidence            7889999999999998732  12 334678999999999999987664 45667899999999999998  3666555  


Q ss_pred             CCccEEEccCCcccCCCCh
Q 030257          148 SSLQTLYLSYNQLSGPIPS  166 (180)
Q Consensus       148 ~~L~~l~l~~n~~~~~~~~  166 (180)
                      ++|+.|++++|.+++. |.
T Consensus       274 ~~L~~L~Ls~N~l~~~-p~  291 (312)
T 1wwl_A          274 AKLSVLDLSYNRLDRN-PS  291 (312)
T ss_dssp             SEEEEEECCSSCCCSC-CC
T ss_pred             CCceEEECCCCCCCCC-hh
Confidence            7999999999999865 54

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.84  E-value=4.3e-21  Score=149.11  Aligned_cols=156  Identities=21%  Similarity=0.394  Sum_probs=132.9

Q ss_pred             CchhhhhcCCCccEEEcccccCCCC-----------------CCcccc--CCCCccEEEecccccccccchhhhccCCcc
Q 030257           18 LPPNFCNHLSNLESLFLKNNMFHGK-----------------IPSTLS--NCKRLRNISLSLDDFSGTIPKEIGNVTKLI   78 (180)
Q Consensus        18 ~~~~~~~~l~~L~~L~l~~~~~~~~-----------------~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   78 (180)
                      +|..+. ++++|++|++++|.+.+.                 .|..+.  .+++|++|++++|.+....|..+.++++|+
T Consensus       198 ip~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  276 (636)
T 4eco_A          198 VSKAVM-RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ  276 (636)
T ss_dssp             ECGGGG-GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred             CCHHHh-cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence            666554 499999999999999864                 888888  999999999999998888899999999999


Q ss_pred             EEEeeCCc-CCC-CcchhhcCC------CcccEEEecCCcCCCCccc--cccCCCCCCeEEcccCcCCCCCCcccccCCC
Q 030257           79 RLYLRGNQ-LQG-EIPEELGNL------AELEMLWLQNNFLTRAIPS--SIFNLSSLSNLDLSVNNLTGGIIPSLLGNQS  148 (180)
Q Consensus        79 ~l~l~~~~-~~~-~~~~~~~~~------~~L~~l~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  148 (180)
                      +|++++|. +++ ..|..+..+      ++|+.+++++|.+. .+|.  .+..+++|++|++++|.+++. ++ .+..++
T Consensus       277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~-ip-~~~~l~  353 (636)
T 4eco_A          277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGK-LP-AFGSEI  353 (636)
T ss_dssp             EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEE-CC-CCEEEE
T ss_pred             EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccc-hh-hhCCCC
Confidence            99999998 776 577777665      89999999999998 6787  899999999999999999854 56 778889


Q ss_pred             CccEEEccCCcccCCCChhhhhhccccccc
Q 030257          149 SLQTLYLSYNQLSGPIPSFILCKFSLLDNI  178 (180)
Q Consensus       149 ~L~~l~l~~n~~~~~~~~~~~~~~~~~~~l  178 (180)
                      +|+.|++++|.+. .+|..+..+...++.+
T Consensus       354 ~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L  382 (636)
T 4eco_A          354 KLASLNLAYNQIT-EIPANFCGFTEQVENL  382 (636)
T ss_dssp             EESEEECCSSEEE-ECCTTSEEECTTCCEE
T ss_pred             CCCEEECCCCccc-cccHhhhhhcccCcEE
Confidence            9999999999998 7888776665524433

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.84  E-value=1.2e-19  Score=141.92  Aligned_cols=168  Identities=24%  Similarity=0.247  Sum_probs=104.8

Q ss_pred             CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCC--------------------------CCCccccCCCCcc
Q 030257            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHG--------------------------KIPSTLSNCKRLR   54 (180)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--------------------------~~~~~~~~l~~L~   54 (180)
                      +++|+.|++++|.+.+.++...+.++++|++|++++|.+..                          ..|..+..+++|+
T Consensus       404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~  483 (680)
T 1ziw_A          404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT  483 (680)
T ss_dssp             CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC
T ss_pred             CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCC
Confidence            35677777777776655555555556666666666665432                          3445556666677


Q ss_pred             EEEecccccccccchhhhccCCccEEEeeCCcCCCCcc--------hhhcCCCcccEEEecCCcCCCCccccccCCCCCC
Q 030257           55 NISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIP--------EELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLS  126 (180)
Q Consensus        55 ~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~--------~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~  126 (180)
                      .|++++|.+....+..+..+++|++|++++|.+....+        ..+..+++|+.+++++|.+....+..+..+++|+
T Consensus       484 ~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~  563 (680)
T 1ziw_A          484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK  563 (680)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             EEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcc
Confidence            77777766665555556667777777777766543211        1245666777777777777644344567777777


Q ss_pred             eEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCCChhhh
Q 030257          127 NLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFIL  169 (180)
Q Consensus       127 ~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~  169 (180)
                      +|++++|.+++ ..+..+..+++|+.|++++|.+++..+..+.
T Consensus       564 ~L~Ls~N~l~~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  605 (680)
T 1ziw_A          564 IIDLGLNNLNT-LPASVFNNQVSLKSLNLQKNLITSVEKKVFG  605 (680)
T ss_dssp             EEECCSSCCCC-CCTTTTTTCTTCCEEECTTSCCCBCCHHHHH
T ss_pred             eeECCCCCCCc-CCHhHhCCCCCCCEEECCCCcCCccChhHhc
Confidence            77777777763 2334456677777777777777765554443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.84  E-value=2.5e-20  Score=148.45  Aligned_cols=163  Identities=21%  Similarity=0.291  Sum_probs=133.7

Q ss_pred             CCCceEEEeeCCeecc-----------------cCchhh-hhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccc
Q 030257            1 MSSLLSIRFTNNTLFG-----------------ELPPNF-CNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDD   62 (180)
Q Consensus         1 l~~L~~L~l~~~~~~~-----------------~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~   62 (180)
                      |++|+.|++++|.+.+                 .+|..+ +.++++|++|++++|.+.+..|..+..+++|+.|++++|.
T Consensus       447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~  526 (876)
T 4ecn_A          447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR  526 (876)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred             CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence            5789999999999886                 277776 3459999999999999888899999999999999999997


Q ss_pred             -ccc-ccchhhhccC-------CccEEEeeCCcCCCCcch--hhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcc
Q 030257           63 -FSG-TIPKEIGNVT-------KLIRLYLRGNQLQGEIPE--ELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLS  131 (180)
Q Consensus        63 -~~~-~~~~~~~~l~-------~L~~l~l~~~~~~~~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~  131 (180)
                       +.. ..|..+..+.       +|++|++++|.+. ..|.  .+..+++|+.|++++|.+. .+| .+..+++|+.|+++
T Consensus       527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls  603 (876)
T 4ecn_A          527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLD  603 (876)
T ss_dssp             TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECC
T ss_pred             CcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECc
Confidence             765 5676666555       8999999999888 6777  7888999999999999887 566 77888888888888


Q ss_pred             cCcCCCCCCcccccCCCC-ccEEEccCCcccCCCChhhh
Q 030257          132 VNNLTGGIIPSLLGNQSS-LQTLYLSYNQLSGPIPSFIL  169 (180)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~-L~~l~l~~n~~~~~~~~~~~  169 (180)
                      +|.+.  .++..+..+++ |+.|++++|.+. .+|..+.
T Consensus       604 ~N~l~--~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~  639 (876)
T 4ecn_A          604 YNQIE--EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFN  639 (876)
T ss_dssp             SSCCS--CCCTTSCEECTTCCEEECCSSCCC-SCCSCCC
T ss_pred             CCccc--cchHHHhhccccCCEEECcCCCCC-cCchhhh
Confidence            88887  36666777777 888888888877 5665544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.84  E-value=2.8e-20  Score=142.67  Aligned_cols=162  Identities=22%  Similarity=0.282  Sum_probs=113.6

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCC-ccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIP-STLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   80 (180)
                      ++|++|++++|.+. .++.. +.++++|++|++++|.+....+ ..+..+++|++|++++|.+....+..+..+++|++|
T Consensus       373 ~~L~~L~l~~n~l~-~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  450 (570)
T 2z63_A          373 TSLKYLDLSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL  450 (570)
T ss_dssp             SCCCEEECCSCSEE-EEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred             CccCEEECCCCccc-ccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEE
Confidence            45555666555554 23333 3346667777777666654433 356677778888888777776666777778888888


Q ss_pred             EeeCCcCC-CCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCc
Q 030257           81 YLRGNQLQ-GEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQ  159 (180)
Q Consensus        81 ~l~~~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~  159 (180)
                      ++.+|.+. ...|..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++. .+..+..+++|+.+++++|+
T Consensus       451 ~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV-PDGIFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSC
T ss_pred             ECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCC-CHHHhhcccCCcEEEecCCc
Confidence            88888765 34566677788888888888888766677777888888888888887753 44567778888888888888


Q ss_pred             ccCCCCh
Q 030257          160 LSGPIPS  166 (180)
Q Consensus       160 ~~~~~~~  166 (180)
                      +++..|.
T Consensus       530 ~~~~~~~  536 (570)
T 2z63_A          530 WDCSCPR  536 (570)
T ss_dssp             BCCCTTT
T ss_pred             ccCCCcc
Confidence            8777664

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.83  E-value=6.8e-20  Score=133.58  Aligned_cols=151  Identities=23%  Similarity=0.225  Sum_probs=84.7

Q ss_pred             EEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCcccc-CCCCccEEEecccccccccchhhhccCCccEEEeeC
Q 030257            6 SIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLS-NCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG   84 (180)
Q Consensus         6 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~   84 (180)
                      .++++++.+. .+|..+.   +.++.|++++|.+....+..+. .+++|+.|++++|.+....+..+..+++|++|++++
T Consensus        22 ~l~c~~~~l~-~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           22 ILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             EEECCSSCCS-SCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             EEEeCCCCcC-ccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            4555555554 4554432   2355666666666544444444 566666666666666655555566666666666666


Q ss_pred             CcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcc-cc---cCCCCccEEEccCCcc
Q 030257           85 NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPS-LL---GNQSSLQTLYLSYNQL  160 (180)
Q Consensus        85 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~---~~~~~L~~l~l~~n~~  160 (180)
                      |.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++  ++. .+   ..+++|+.|++++|.+
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~~~~l~~L~~L~L~~N~l  175 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR--FPVELIKDGNKLPKLMLLDLSSNKL  175 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS--CCGGGTC----CTTCCEEECCSSCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe--eCHHHhcCcccCCcCCEEECCCCCC
Confidence            66554444445566666666666666655445556666666666666666653  222 22   3455666666666666


Q ss_pred             cC
Q 030257          161 SG  162 (180)
Q Consensus       161 ~~  162 (180)
                      .+
T Consensus       176 ~~  177 (361)
T 2xot_A          176 KK  177 (361)
T ss_dssp             CC
T ss_pred             Cc
Confidence            54

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.83  E-value=2.9e-20  Score=142.54  Aligned_cols=165  Identities=19%  Similarity=0.178  Sum_probs=114.9

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   81 (180)
                      ++++.|++++|.+. .++...+.++++|++|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|++|+
T Consensus        28 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (570)
T 2z63_A           28 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (570)
T ss_dssp             SSCCEEECCSCCCC-EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             ccccEEEccCCccC-ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence            35777888777776 44444445577888888888777765666777778888888888777766666777788888888


Q ss_pred             eeCCcCCCCcchhhcCCCcccEEEecCCcCCC-CccccccCCCCCCeEEcccCcCCCCCCcccccCCCCc----cEEEcc
Q 030257           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTR-AIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSL----QTLYLS  156 (180)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L----~~l~l~  156 (180)
                      +.+|.+....+..+..+++|+.|++++|.+.+ ..|..+.++++|++|++++|.+++. .+..+..+++|    ..++++
T Consensus       107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~~~~~L~l~  185 (570)
T 2z63_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-YCTDLRVLHQMPLLNLSLDLS  185 (570)
T ss_dssp             CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE-CGGGGHHHHTCTTCCCEEECT
T ss_pred             ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee-cHHHccchhccchhhhhcccC
Confidence            88777764444456777788888888877765 3567777777888888888777642 34445555555    677777


Q ss_pred             CCcccCCCChhh
Q 030257          157 YNQLSGPIPSFI  168 (180)
Q Consensus       157 ~n~~~~~~~~~~  168 (180)
                      +|.+.+..+..+
T Consensus       186 ~n~l~~~~~~~~  197 (570)
T 2z63_A          186 LNPMNFIQPGAF  197 (570)
T ss_dssp             TCCCCEECTTTT
T ss_pred             CCCceecCHHHh
Confidence            777775555443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.83  E-value=2.5e-20  Score=135.87  Aligned_cols=160  Identities=25%  Similarity=0.253  Sum_probs=134.8

Q ss_pred             CCceEEEeeCCeecccCchhhhh-cCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCN-HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   80 (180)
                      +.++.|++++|.+. .++...+. ++++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|
T Consensus        39 ~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  117 (361)
T 2xot_A           39 SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL  117 (361)
T ss_dssp             TTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEE
Confidence            45889999999997 56666665 79999999999999997777889999999999999999987777789999999999


Q ss_pred             EeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccc---cCCCCCCeEEcccCcCCCCCCcccccCCCC--ccEEEc
Q 030257           81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSI---FNLSSLSNLDLSVNNLTGGIIPSLLGNQSS--LQTLYL  155 (180)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~--L~~l~l  155 (180)
                      ++.+|.+....+..+..+++|+.|++++|.+.+.....+   ..+++|+.|++++|.++.. ....+..++.  ++.|++
T Consensus       118 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~l~~~~l~~l~l  196 (361)
T 2xot_A          118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL-PLTDLQKLPAWVKNGLYL  196 (361)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC-CHHHHHHSCHHHHTTEEC
T ss_pred             ECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc-CHHHhhhccHhhcceEEe
Confidence            999999987777889999999999999999986555555   5689999999999999842 3345666665  488999


Q ss_pred             cCCcccCC
Q 030257          156 SYNQLSGP  163 (180)
Q Consensus       156 ~~n~~~~~  163 (180)
                      .+|++...
T Consensus       197 ~~N~~~C~  204 (361)
T 2xot_A          197 HNNPLECD  204 (361)
T ss_dssp             CSSCEECC
T ss_pred             cCCCccCC
Confidence            99998643

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.83  E-value=8.4e-20  Score=124.49  Aligned_cols=134  Identities=19%  Similarity=0.279  Sum_probs=121.6

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   81 (180)
                      ++++.|++++|.+. .++...+.++++|++|++++|.+....+..|.++++|++|++++|.+....+..+..+++|++|+
T Consensus        32 ~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~  110 (220)
T 2v9t_B           32 ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL  110 (220)
T ss_dssp             TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence            47899999999987 67776777799999999999999977789999999999999999999977667789999999999


Q ss_pred             eeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCC
Q 030257           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT  136 (180)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  136 (180)
                      +++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.+++++|.+.
T Consensus       111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            9999999777888999999999999999999877778899999999999999875

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.83  E-value=2.7e-19  Score=128.87  Aligned_cols=165  Identities=21%  Similarity=0.259  Sum_probs=100.6

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   81 (180)
                      ++++.|++++|.+. .++...+.++++|++|++++|.+....+..+..+++|++|++++|.+.. .|..+.  ++|++|+
T Consensus        52 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~--~~L~~L~  127 (330)
T 1xku_A           52 PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELR  127 (330)
T ss_dssp             TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSCC--TTCCEEE
T ss_pred             CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc-cChhhc--ccccEEE
Confidence            46778888888776 4555555568888888888888876667777888888888888777663 222221  4555555


Q ss_pred             eeCCcCCCCcchhhcCCCcccEEEecCCcCCC--CccccccCCC---------------------CCCeEEcccCcCCCC
Q 030257           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTR--AIPSSIFNLS---------------------SLSNLDLSVNNLTGG  138 (180)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~--~~~~~l~~~~---------------------~L~~L~l~~~~~~~~  138 (180)
                      +.+|.+....+..+..+++|+.+++++|.+..  ..+..+..++                     +|++|++++|.+++.
T Consensus       128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~  207 (330)
T 1xku_A          128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKV  207 (330)
T ss_dssp             CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEE
T ss_pred             CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCcc
Confidence            55555554344445555555555555555432  2233333444                     455555555555432


Q ss_pred             CCcccccCCCCccEEEccCCcccCCCChhhhhh
Q 030257          139 IIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCK  171 (180)
Q Consensus       139 ~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~  171 (180)
                       .+..+..+++|+.|++++|.+.+..+..+...
T Consensus       208 -~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  239 (330)
T 1xku_A          208 -DAASLKGLNNLAKLGLSFNSISAVDNGSLANT  239 (330)
T ss_dssp             -CTGGGTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred             -CHHHhcCCCCCCEEECCCCcCceeChhhccCC
Confidence             34456677777888888777776555555443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.83  E-value=1.8e-20  Score=143.17  Aligned_cols=156  Identities=21%  Similarity=0.214  Sum_probs=99.3

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   81 (180)
                      +++++|++++|.+.+ ++...+.++++|++|++++|.+.+..+.+|..+++|++|++++|.+....+..+..+++|++|+
T Consensus        26 ~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  104 (549)
T 2z81_A           26 AAMKSLDLSFNKITY-IGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN  104 (549)
T ss_dssp             TTCCEEECCSSCCCE-ECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred             CCccEEECcCCccCc-cChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence            357777777777663 3333344577777777777777766666677777777777777777766556677777777777


Q ss_pred             eeCCcCCCC-cchhhcCCCcccEEEecCCcCCCCcc-ccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCc
Q 030257           82 LRGNQLQGE-IPEELGNLAELEMLWLQNNFLTRAIP-SSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQ  159 (180)
Q Consensus        82 l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~  159 (180)
                      +++|.+... .+..+..+++|+.+++++|...+..+ ..+..+++|++|++++|.+++. .+..+..+++|+.|++++|.
T Consensus       105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~  183 (549)
T 2z81_A          105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY-QSQSLKSIRDIHHLTLHLSE  183 (549)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE-CTTTTTTCSEEEEEEEECSB
T ss_pred             CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc-ChhhhhccccCceEecccCc
Confidence            777776542 34456677777777777776433333 4566677777777777766542 33444444444444443333

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.82  E-value=5.7e-20  Score=142.25  Aligned_cols=162  Identities=20%  Similarity=0.163  Sum_probs=134.4

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   81 (180)
                      +++++|++++|.++ .++...+.++++|++|++++|.+....+.+|.++++|++|++++|.+....++.|.++++|++|+
T Consensus        52 ~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~  130 (635)
T 4g8a_A           52 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  130 (635)
T ss_dssp             TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred             cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence            47899999999997 67777777799999999999999977778899999999999999999877778899999999999


Q ss_pred             eeCCcCCCCcchhhcCCCcccEEEecCCcCCCC-ccccccCCCCCCeEEcccCcCCCCCCcccccCCC----CccEEEcc
Q 030257           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRA-IPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQS----SLQTLYLS  156 (180)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~----~L~~l~l~  156 (180)
                      +.+|.++...+..++.+++|+.|++++|.+.+. .+..+..+++|++|++++|.+++. .+..+..+.    ....++++
T Consensus       131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~l~~L~~l~~~~~~~~ls  209 (635)
T 4g8a_A          131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-YCTDLRVLHQMPLLNLSLDLS  209 (635)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE-CGGGGHHHHTCTTCCCEEECT
T ss_pred             CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc-ccccccchhhhhhhhhhhhcc
Confidence            999999866566789999999999999999763 567788899999999999998743 333333222    34577888


Q ss_pred             CCcccCCCC
Q 030257          157 YNQLSGPIP  165 (180)
Q Consensus       157 ~n~~~~~~~  165 (180)
                      .|.+....+
T Consensus       210 ~n~l~~i~~  218 (635)
T 4g8a_A          210 LNPMNFIQP  218 (635)
T ss_dssp             TCCCCEECT
T ss_pred             cCcccccCc
Confidence            887764433

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.82  E-value=2.6e-19  Score=129.08  Aligned_cols=107  Identities=20%  Similarity=0.282  Sum_probs=89.8

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   81 (180)
                      ++++.|++++|.+. .++...+.++++|++|++++|.+....+..|..+++|++|++++|.+.. .|..+.  ++|++|+
T Consensus        54 ~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~--~~L~~L~  129 (332)
T 2ft3_A           54 PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE-IPPNLP--SSLVELR  129 (332)
T ss_dssp             TTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS-CCSSCC--TTCCEEE
T ss_pred             CCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc-cCcccc--ccCCEEE
Confidence            57899999999987 5666556679999999999999997778899999999999999999884 444333  7999999


Q ss_pred             eeCCcCCCCcchhhcCCCcccEEEecCCcCC
Q 030257           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLT  112 (180)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~  112 (180)
                      +.+|.+....+..+..+++|+.+++++|.+.
T Consensus       130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~  160 (332)
T 2ft3_A          130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE  160 (332)
T ss_dssp             CCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred             CCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence            9999988665666888899999998888774

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.82  E-value=1.2e-19  Score=123.66  Aligned_cols=136  Identities=21%  Similarity=0.251  Sum_probs=122.4

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   81 (180)
                      +.+++|++++|.+.+..+..++.++++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|+
T Consensus        32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  111 (220)
T 2v70_A           32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM  111 (220)
T ss_dssp             TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred             CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence            35789999999998544667777799999999999999977777899999999999999999988888899999999999


Q ss_pred             eeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCC
Q 030257           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG  137 (180)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  137 (180)
                      +++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+..
T Consensus       112 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A          112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             CTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred             CCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence            99999987778889999999999999999998778899999999999999998763

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.82  E-value=7.2e-19  Score=125.58  Aligned_cols=147  Identities=24%  Similarity=0.437  Sum_probs=78.3

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   81 (180)
                      ++|++|++++|.+. .++.  +.++++|++|++++|.+.. . ..+..+++|+.|++++|.+... + .+..+++|++|+
T Consensus        63 ~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~  135 (308)
T 1h6u_A           63 NNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLY  135 (308)
T ss_dssp             TTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEE
T ss_pred             CCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEE
Confidence            45566666666554 3333  3346666666666665542 2 2355566666666666655532 1 255556666666


Q ss_pred             eeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCccc
Q 030257           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS  161 (180)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  161 (180)
                      +++|.+....+  +..+++|+.|++++|.+.+..+  +..+++|++|++++|.+++  ++. +..+++|+.|++++|.+.
T Consensus       136 l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L~~N~l~  208 (308)
T 1h6u_A          136 LDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD--ISP-LASLPNLIEVHLKNNQIS  208 (308)
T ss_dssp             CCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC--CGG-GGGCTTCCEEECTTSCCC
T ss_pred             CCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCc--Chh-hcCCCCCCEEEccCCccC
Confidence            66665543211  4555566666666665553222  4555566666666665552  222 445556666666666555


Q ss_pred             C
Q 030257          162 G  162 (180)
Q Consensus       162 ~  162 (180)
                      +
T Consensus       209 ~  209 (308)
T 1h6u_A          209 D  209 (308)
T ss_dssp             B
T ss_pred             c
Confidence            3

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.82  E-value=3.4e-20  Score=147.66  Aligned_cols=155  Identities=21%  Similarity=0.333  Sum_probs=131.7

Q ss_pred             CchhhhhcCCCccEEEcccccCCC-----------------CCCcccc--CCCCccEEEecccccccccchhhhccCCcc
Q 030257           18 LPPNFCNHLSNLESLFLKNNMFHG-----------------KIPSTLS--NCKRLRNISLSLDDFSGTIPKEIGNVTKLI   78 (180)
Q Consensus        18 ~~~~~~~~l~~L~~L~l~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~   78 (180)
                      +|..+. ++++|++|++++|.+.+                 ..|..+.  .+++|+.|++++|.+....|..+.++++|+
T Consensus       440 IP~~l~-~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~  518 (876)
T 4ecn_A          440 ISKAIQ-RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ  518 (876)
T ss_dssp             ECGGGG-GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred             hhHHHh-cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence            666554 49999999999999986                 2788877  999999999999998888899999999999


Q ss_pred             EEEeeCCc-CCC-CcchhhcCC-------CcccEEEecCCcCCCCccc--cccCCCCCCeEEcccCcCCCCCCcccccCC
Q 030257           79 RLYLRGNQ-LQG-EIPEELGNL-------AELEMLWLQNNFLTRAIPS--SIFNLSSLSNLDLSVNNLTGGIIPSLLGNQ  147 (180)
Q Consensus        79 ~l~l~~~~-~~~-~~~~~~~~~-------~~L~~l~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~  147 (180)
                      +|++++|. ++. ..|..+..+       ++|+.|++++|.+. .+|.  .+..+++|+.|++++|.++  .++ .+..+
T Consensus       519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~--~lp-~~~~L  594 (876)
T 4ecn_A          519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR--HLE-AFGTN  594 (876)
T ss_dssp             EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC--BCC-CCCTT
T ss_pred             EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc--cch-hhcCC
Confidence            99999998 775 566655544       49999999999998 7787  8999999999999999998  466 78899


Q ss_pred             CCccEEEccCCcccCCCChhhhhhccccccc
Q 030257          148 SSLQTLYLSYNQLSGPIPSFILCKFSLLDNI  178 (180)
Q Consensus       148 ~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~l  178 (180)
                      ++|+.|++++|.+. .+|..+..+...++.|
T Consensus       595 ~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L  624 (876)
T 4ecn_A          595 VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGL  624 (876)
T ss_dssp             SEESEEECCSSCCS-CCCTTSCEECTTCCEE
T ss_pred             CcceEEECcCCccc-cchHHHhhccccCCEE
Confidence            99999999999999 7888777665424443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.82  E-value=3.8e-19  Score=135.20  Aligned_cols=139  Identities=21%  Similarity=0.275  Sum_probs=92.6

Q ss_pred             hcCCCccEEEcccccCCCCCCccccCCCCccEEEeccccccc--ccchhhhccCCccEEEeeCCcCCCCcch-hhcCCCc
Q 030257           24 NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSG--TIPKEIGNVTKLIRLYLRGNQLQGEIPE-ELGNLAE  100 (180)
Q Consensus        24 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~l~l~~~~~~~~~~~-~~~~~~~  100 (180)
                      ..+++|++|++++|.+.+..+..+..+++|++|++++|.+..  ..|..+..+++|++|++++|.+....|. .+..+++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~  400 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS  400 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence            346777778887777776667777777888888888877764  3345677777888888887777653443 3566677


Q ss_pred             ccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCCChh
Q 030257          101 LEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSF  167 (180)
Q Consensus       101 L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~  167 (180)
                      |+.+++++|.+++..+..+.  ++|++|++++|.++  .++..+..+++|+.|++++|.++ .+|..
T Consensus       401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~--~ip~~~~~l~~L~~L~L~~N~l~-~l~~~  462 (520)
T 2z7x_B          401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK--SIPKQVVKLEALQELNVASNQLK-SVPDG  462 (520)
T ss_dssp             CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCC-CCCTT
T ss_pred             CCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc--ccchhhhcCCCCCEEECCCCcCC-ccCHH
Confidence            77777777776554444332  56777777777666  35555556677777777777766 34443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.81  E-value=1.4e-19  Score=144.60  Aligned_cols=161  Identities=20%  Similarity=0.164  Sum_probs=102.2

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCC-CccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKI-PSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   80 (180)
                      ++++.|++++|.+.+ ++...+.++++|++|++++|...... +.+|.++++|++|++++|.+....|..+.++++|++|
T Consensus        24 ~~l~~LdLs~N~i~~-i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  102 (844)
T 3j0a_A           24 NTTERLLLSFNYIRT-VTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL  102 (844)
T ss_dssp             TTCCEEEEESCCCCE-ECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred             CCcCEEECCCCcCCc-cChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence            567777887777763 33333445777777777777444333 5667777777777777777776667777777777777


Q ss_pred             EeeCCcCCCCcchh--hcCCCcccEEEecCCcCCCCcc-ccccCCCCCCeEEcccCcCCCCCCcccccCC--CCccEEEc
Q 030257           81 YLRGNQLQGEIPEE--LGNLAELEMLWLQNNFLTRAIP-SSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQ--SSLQTLYL  155 (180)
Q Consensus        81 ~l~~~~~~~~~~~~--~~~~~~L~~l~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~~L~~l~l  155 (180)
                      ++++|.+....+..  +..+++|+.|++++|.+.+..+ ..+.++++|++|++++|.+++. .+..+..+  ++|+.|++
T Consensus       103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~-~~~~l~~l~~~~L~~L~L  181 (844)
T 3j0a_A          103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV-CEHELEPLQGKTLSFFSL  181 (844)
T ss_dssp             ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC-CSGGGHHHHHCSSCCCEE
T ss_pred             eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee-CHHHcccccCCccceEEC
Confidence            77777766544443  6677777777777777765443 4567777777777777766542 23333222  34444444


Q ss_pred             cCCcccCCC
Q 030257          156 SYNQLSGPI  164 (180)
Q Consensus       156 ~~n~~~~~~  164 (180)
                      ++|.+.+..
T Consensus       182 ~~n~l~~~~  190 (844)
T 3j0a_A          182 AANSLYSRV  190 (844)
T ss_dssp             CCSBSCCCC
T ss_pred             CCCcccccc
Confidence            444444333

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.81  E-value=1.4e-19  Score=138.39  Aligned_cols=166  Identities=18%  Similarity=0.126  Sum_probs=140.4

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   81 (180)
                      +.....+.+++.++ .+|..++   ++|++|++++|.+.+..+..|..+++|++|++++|.+....++.+..+++|++|+
T Consensus         5 ~~~~~c~~~~~~l~-~ip~~~~---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   80 (549)
T 2z81_A            5 DASGVCDGRSRSFT-SIPSGLT---AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD   80 (549)
T ss_dssp             CTTSEEECTTSCCS-SCCSCCC---TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCceEECCCCccc-cccccCC---CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence            34445667777776 7887663   6899999999999877788899999999999999999977778899999999999


Q ss_pred             eeCCcCCCCcchhhcCCCcccEEEecCCcCCCC-ccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcc
Q 030257           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRA-IPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQL  160 (180)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~  160 (180)
                      +++|.+....+..+..+++|+.|++++|.+.+. .+..+..+++|++|++++|...+...+..+..+++|+.|++++|.+
T Consensus        81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l  160 (549)
T 2z81_A           81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL  160 (549)
T ss_dssp             CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred             CCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence            999999877777799999999999999999863 4578889999999999999844333345688899999999999999


Q ss_pred             cCCCChhhhhh
Q 030257          161 SGPIPSFILCK  171 (180)
Q Consensus       161 ~~~~~~~~~~~  171 (180)
                      .+..|..+..+
T Consensus       161 ~~~~~~~l~~l  171 (549)
T 2z81_A          161 RNYQSQSLKSI  171 (549)
T ss_dssp             CEECTTTTTTC
T ss_pred             cccChhhhhcc
Confidence            98888776654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.81  E-value=3.3e-19  Score=142.47  Aligned_cols=169  Identities=20%  Similarity=0.178  Sum_probs=142.1

Q ss_pred             CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchh--hhccCCcc
Q 030257            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKE--IGNVTKLI   78 (180)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~l~~L~   78 (180)
                      +++|++|++++|...+.+++..+.++++|++|++++|.+....|..|..+++|++|++++|.+....+..  +..+++|+
T Consensus        47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~  126 (844)
T 3j0a_A           47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT  126 (844)
T ss_dssp             CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred             cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCC
Confidence            5789999999997666776777778999999999999999888999999999999999999998655554  88999999


Q ss_pred             EEEeeCCcCCCCcc-hhhcCCCcccEEEecCCcCCCCccccccCC--CCCCeEEcccCcCCCCCCcccccCCC------C
Q 030257           79 RLYLRGNQLQGEIP-EELGNLAELEMLWLQNNFLTRAIPSSIFNL--SSLSNLDLSVNNLTGGIIPSLLGNQS------S  149 (180)
Q Consensus        79 ~l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~------~  149 (180)
                      +|++++|.+....+ ..+..+++|+.|++++|.+.+..+..+..+  ++|+.|++++|.+.+. .+..+..+.      .
T Consensus       127 ~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~-~~~~~~~~~~~~~~~~  205 (844)
T 3j0a_A          127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSR-VSVDWGKCMNPFRNMV  205 (844)
T ss_dssp             EEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCC-CCCCCCSSSCTTTTCC
T ss_pred             EEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccc-cccchhhcCCccccCc
Confidence            99999999876544 578999999999999999988777777766  8999999999998754 444444444      3


Q ss_pred             ccEEEccCCcccCCCChhhhh
Q 030257          150 LQTLYLSYNQLSGPIPSFILC  170 (180)
Q Consensus       150 L~~l~l~~n~~~~~~~~~~~~  170 (180)
                      |+.|++++|.+.+..+..+..
T Consensus       206 L~~L~Ls~n~l~~~~~~~~~~  226 (844)
T 3j0a_A          206 LEILDVSGNGWTVDITGNFSN  226 (844)
T ss_dssp             BSEEBCSSCCSSTTTTSGGGG
T ss_pred             eeEEecCCCcCchhHHHHHHh
Confidence            999999999988777776654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.81  E-value=6.9e-19  Score=135.01  Aligned_cols=139  Identities=23%  Similarity=0.260  Sum_probs=93.9

Q ss_pred             hcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccc--cchhhhccCCccEEEeeCCcCCCCcch-hhcCCCc
Q 030257           24 NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGT--IPKEIGNVTKLIRLYLRGNQLQGEIPE-ELGNLAE  100 (180)
Q Consensus        24 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~l~l~~~~~~~~~~~-~~~~~~~  100 (180)
                      ..+++|++|++++|.+.+..+..+..+++|+.|++++|.+...  .+..+..+++|+++++++|.+....|. .+..+++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            3467788888888887766777777888888888888877642  234567778888888888877653343 4566677


Q ss_pred             ccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCCChh
Q 030257          101 LEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSF  167 (180)
Q Consensus       101 L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~  167 (180)
                      |+.+++++|.+++..+..+.  ++|+.|++++|.++  .++..+..+++|+.|++++|.++ .+|..
T Consensus       430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~--~ip~~~~~l~~L~~L~L~~N~l~-~l~~~  491 (562)
T 3a79_B          430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM--SIPKDVTHLQALQELNVASNQLK-SVPDG  491 (562)
T ss_dssp             CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC--CCCTTTTSSCCCSEEECCSSCCC-CCCTT
T ss_pred             CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc--ccChhhcCCCCCCEEECCCCCCC-CCCHH
Confidence            77777777777654443332  56777777777766  35554556677777777777776 34443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.81  E-value=1.2e-18  Score=123.46  Aligned_cols=146  Identities=27%  Similarity=0.434  Sum_probs=73.4

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   81 (180)
                      ++|++|++++|.+. .++.  +.++++|++|++++|.+.. . ..+..+++|++|++++|.+...  ..+..+++|++|+
T Consensus        68 ~~L~~L~L~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~  140 (291)
T 1h6t_A           68 PNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLY  140 (291)
T ss_dssp             TTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEE
T ss_pred             CCCCEEEccCCccC-CCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEE
Confidence            44555555555544 2222  3335555555555555442 1 2244555555555555555432  2344555555555


Q ss_pred             eeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCccc
Q 030257           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS  161 (180)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  161 (180)
                      +++|.+...  ..+..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+++  ++ .+..+++|+.|++++|++.
T Consensus       141 l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~--l~-~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          141 LGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD--LR-ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             CCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB--CG-GGTTCTTCSEEEEEEEEEE
T ss_pred             ccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC--Ch-hhccCCCCCEEECcCCccc
Confidence            555555422  344555555555555555554322  4555556666666665552  22 2455556666666666554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.81  E-value=6.6e-20  Score=131.03  Aligned_cols=132  Identities=21%  Similarity=0.161  Sum_probs=62.4

Q ss_pred             CCCccEEEcccccCCCCCCccccCCCCccEEEecccccccc--c--chhhhccCCccEEEeeCCcCCCCcch----hhcC
Q 030257           26 LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGT--I--PKEIGNVTKLIRLYLRGNQLQGEIPE----ELGN   97 (180)
Q Consensus        26 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~--~~~~~~l~~L~~l~l~~~~~~~~~~~----~~~~   97 (180)
                      +++|++|++++|.+....+..+..+++|++|++++|.+...  .  +..+..+++|++|++++|.++. .+.    .+..
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~  222 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA  222 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence            44444444444444433334444455555555555443211  0  0112344445555555554431 111    1234


Q ss_pred             CCcccEEEecCCcCCCCccccccCC---CCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccC
Q 030257           98 LAELEMLWLQNNFLTRAIPSSIFNL---SSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSG  162 (180)
Q Consensus        98 ~~~L~~l~l~~~~~~~~~~~~l~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  162 (180)
                      +++|+.|++++|.+.+..|..+..+   ++|++|++++|.++  .++..+.  ++|+.|++++|.+++
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~--~lp~~~~--~~L~~L~Ls~N~l~~  286 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE--QVPKGLP--AKLRVLDLSSNRLNR  286 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC--SCCSCCC--SCCSCEECCSCCCCS
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC--chhhhhc--CCCCEEECCCCcCCC
Confidence            4556666666666655444443333   46666666666655  2333332  466666666666654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.81  E-value=8.8e-19  Score=120.13  Aligned_cols=134  Identities=22%  Similarity=0.282  Sum_probs=118.4

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   81 (180)
                      ++|++|++++|.+. .++...+.++++|++|++++|.+....+..|..+++|+.|++++|.+....+..+..+++|++|+
T Consensus        40 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~  118 (229)
T 3e6j_A           40 TNAQILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF  118 (229)
T ss_dssp             TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEEcCCCccC-ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence            57999999999998 45556666699999999999999866667788999999999999999977777789999999999


Q ss_pred             eeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCC
Q 030257           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG  137 (180)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  137 (180)
                      +++|.+. ..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+..
T Consensus       119 Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          119 MCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             CCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             ccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            9999998 567888899999999999999987666788899999999999998864

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.80  E-value=2.4e-18  Score=124.62  Aligned_cols=131  Identities=27%  Similarity=0.391  Sum_probs=77.8

Q ss_pred             CCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEE
Q 030257           26 LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLW  105 (180)
Q Consensus        26 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~  105 (180)
                      +++|+.+++++|.+....+  +..+++|+.|++++|.+....+  +..+++|+++++++|.+...  ..+..+++|+.++
T Consensus       198 l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~  271 (347)
T 4fmz_A          198 LTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLN  271 (347)
T ss_dssp             CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEE
T ss_pred             CCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEE
Confidence            4444444444444332111  4556666666666666653322  56666677777766665532  3456666777777


Q ss_pred             ecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCCC
Q 030257          106 LQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIP  165 (180)
Q Consensus       106 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  165 (180)
                      +++|.+.+.  ..+..+++|+.|++++|.+++. .+..+..+++|+.|++++|++++..|
T Consensus       272 l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          272 VGSNQISDI--SVLNNLSQLNSLFLNNNQLGNE-DMEVIGGLTNLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             CCSSCCCCC--GGGGGCTTCSEEECCSSCCCGG-GHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred             ccCCccCCC--hhhcCCCCCCEEECcCCcCCCc-ChhHhhccccCCEEEccCCccccccC
Confidence            777766543  3456667777777777776643 44556667777777777777775544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.80  E-value=2.6e-18  Score=122.67  Aligned_cols=150  Identities=23%  Similarity=0.341  Sum_probs=126.0

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   81 (180)
                      ++|++|++.++.+. .++ . +..+++|++|++++|.+.+. +. +..+++|++|++++|.+...  ..+..+++|++|+
T Consensus        41 ~~L~~L~l~~~~i~-~l~-~-~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~  113 (308)
T 1h6u_A           41 DGITTLSAFGTGVT-TIE-G-VQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD  113 (308)
T ss_dssp             HTCCEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred             CCcCEEEeeCCCcc-Cch-h-hhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEE
Confidence            57999999999887 455 3 45599999999999998844 33 88999999999999998743  4688999999999


Q ss_pred             eeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCccc
Q 030257           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS  161 (180)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  161 (180)
                      +++|.+... + .+..+++|+.|++++|.+.+..+  +..+++|++|++++|.+++  .+. +..+++|+.|++++|.+.
T Consensus       114 l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~  186 (308)
T 1h6u_A          114 LTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD--LTP-LANLSKLTTLKADDNKIS  186 (308)
T ss_dssp             CTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCC
T ss_pred             CCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC--Chh-hcCCCCCCEEECCCCccC
Confidence            999998743 3 48899999999999999986433  7889999999999999984  333 788999999999999998


Q ss_pred             CCCC
Q 030257          162 GPIP  165 (180)
Q Consensus       162 ~~~~  165 (180)
                      +..+
T Consensus       187 ~~~~  190 (308)
T 1h6u_A          187 DISP  190 (308)
T ss_dssp             CCGG
T ss_pred             cChh
Confidence            6443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.80  E-value=4.4e-19  Score=134.86  Aligned_cols=159  Identities=28%  Similarity=0.436  Sum_probs=132.8

Q ss_pred             CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCC--CCCccccCCCCccEEEecccccccccch-hhhccCCc
Q 030257            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHG--KIPSTLSNCKRLRNISLSLDDFSGTIPK-EIGNVTKL   77 (180)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L   77 (180)
                      +++|++|++++|.+.+.+|..+ .++++|++|++++|.+.+  ..|..+..+++|++|++++|.+....|. .+..+++|
T Consensus       323 l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L  401 (520)
T 2z7x_B          323 ISPFLHLDFSNNLLTDTVFENC-GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL  401 (520)
T ss_dssp             CCCCCEEECCSSCCCTTTTTTC-CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred             CCcccEEEeECCccChhhhhhh-ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence            4689999999999986566555 459999999999999985  4556788999999999999999863444 57888999


Q ss_pred             cEEEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcc-cccCCCCccEEEcc
Q 030257           78 IRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPS-LLGNQSSLQTLYLS  156 (180)
Q Consensus        78 ~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~l~l~  156 (180)
                      +++++++|.+....+..+.  ++|+.+++++|.+. .+|..+..+++|++|++++|.+++  ++. .+..+++|+.++++
T Consensus       402 ~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~l~~L~~L~l~  476 (520)
T 2z7x_B          402 LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS--VPDGIFDRLTSLQKIWLH  476 (520)
T ss_dssp             CEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECC
T ss_pred             CEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc--cCHHHhccCCcccEEECc
Confidence            9999999998755555443  78999999999998 677766799999999999999983  454 48889999999999


Q ss_pred             CCcccCCCC
Q 030257          157 YNQLSGPIP  165 (180)
Q Consensus       157 ~n~~~~~~~  165 (180)
                      +|++....+
T Consensus       477 ~N~~~c~c~  485 (520)
T 2z7x_B          477 TNPWDCSCP  485 (520)
T ss_dssp             SSCBCCCHH
T ss_pred             CCCCcccCC
Confidence            999987655

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.79  E-value=4.6e-19  Score=133.86  Aligned_cols=132  Identities=17%  Similarity=0.177  Sum_probs=73.8

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccch------------
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPK------------   69 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~------------   69 (180)
                      ++|+.|++++|.+. .+++..+.++++|++|++++|.+.+..+  +..+++|++|++++|.+....+.            
T Consensus        34 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~  110 (487)
T 3oja_A           34 WNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNN  110 (487)
T ss_dssp             GGCCEEECCSSCCC-CCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSC
T ss_pred             CCccEEEeeCCcCC-CCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCc
Confidence            47888999888887 4555555668888889888888764333  66777777777766655422110            


Q ss_pred             ----hhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCcccccc-CCCCCCeEEcccCcCC
Q 030257           70 ----EIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNNLT  136 (180)
Q Consensus        70 ----~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~  136 (180)
                          ....+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+. .+++|+.|++++|.++
T Consensus       111 l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence                001233445555555544433344444455555555555555443333332 3444444444444443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.79  E-value=4.6e-19  Score=126.66  Aligned_cols=154  Identities=19%  Similarity=0.153  Sum_probs=124.2

Q ss_pred             CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCC--C--CccccCCCCccEEEecccccccccch----hhh
Q 030257            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGK--I--PSTLSNCKRLRNISLSLDDFSGTIPK----EIG   72 (180)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~--~~~~~~l~~L~~L~l~~~~~~~~~~~----~~~   72 (180)
                      +++|++|++++|.+. .++...+.++++|++|++++|.+.+.  .  +..+..+++|++|++++|.+.. .+.    .+.
T Consensus       144 ~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~  221 (310)
T 4glp_A          144 KPGLKVLSIAQAHSP-AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAA  221 (310)
T ss_dssp             CSCCCEEEEECCSSC-CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCcc-hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHh
Confidence            478999999999996 56666666799999999999987531  2  2334678999999999999863 222    356


Q ss_pred             ccCCccEEEeeCCcCCCCcchhhcCC---CcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCC
Q 030257           73 NVTKLIRLYLRGNQLQGEIPEELGNL---AELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSS  149 (180)
Q Consensus        73 ~l~~L~~l~l~~~~~~~~~~~~~~~~---~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  149 (180)
                      .+++|++|++++|.+....|..+..+   ++|+.|++++|.++ .+|..+.  ++|++|++++|.+++  ++. +..+++
T Consensus       222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~--~~~-~~~l~~  295 (310)
T 4glp_A          222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR--APQ-PDELPE  295 (310)
T ss_dssp             HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS--CCC-TTSCCC
T ss_pred             cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC--Cch-hhhCCC
Confidence            78999999999999987667666665   69999999999998 5566553  799999999999984  333 567899


Q ss_pred             ccEEEccCCcccC
Q 030257          150 LQTLYLSYNQLSG  162 (180)
Q Consensus       150 L~~l~l~~n~~~~  162 (180)
                      |+.|++++|++++
T Consensus       296 L~~L~L~~N~l~~  308 (310)
T 4glp_A          296 VDNLTLDGNPFLV  308 (310)
T ss_dssp             CSCEECSSTTTSC
T ss_pred             ccEEECcCCCCCC
Confidence            9999999999875

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.79  E-value=3e-19  Score=128.04  Aligned_cols=140  Identities=19%  Similarity=0.184  Sum_probs=101.6

Q ss_pred             CCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhh-hccCCccEEEeeCCcCCCCcchhhcCCCcccEE
Q 030257           26 LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEI-GNVTKLIRLYLRGNQLQGEIPEELGNLAELEML  104 (180)
Q Consensus        26 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l  104 (180)
                      +++|++|++++|.+....+..+..+++|++|++++|.+....+..+ ..+++|++|++++|.+... + ....+++|+.+
T Consensus       119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L  196 (317)
T 3o53_A          119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTL  196 (317)
T ss_dssp             CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEE
T ss_pred             cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEE
Confidence            5667778888887776666677778888888888888876655555 3678888888888887633 2 22347788888


Q ss_pred             EecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCccc-CCCChhhhh
Q 030257          105 WLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS-GPIPSFILC  170 (180)
Q Consensus       105 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~-~~~~~~~~~  170 (180)
                      ++++|.+.+ .+..+..+++|++|++++|.++  .++..+..+++|+.+++++|++. +.++.++..
T Consensus       197 ~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~--~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~  260 (317)
T 3o53_A          197 DLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV--LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK  260 (317)
T ss_dssp             ECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC--EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHT
T ss_pred             ECCCCcCCc-chhhhcccCcccEEECcCCccc--chhhHhhcCCCCCEEEccCCCccCcCHHHHHhc
Confidence            888888874 4444777888888888888887  35666777888888888888887 444444443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.79  E-value=3.8e-19  Score=127.46  Aligned_cols=159  Identities=22%  Similarity=0.237  Sum_probs=86.4

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEeccccccc----------------
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSG----------------   65 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~----------------   65 (180)
                      ++|++|++++|.+. .++...+.++++|++|++++|.+.+..+  +..+++|++|++++|.+..                
T Consensus        34 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~  110 (317)
T 3o53_A           34 WNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNN  110 (317)
T ss_dssp             GGCSEEECTTSCCC-CCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSC
T ss_pred             CCCCEEECcCCccC-cCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCc
Confidence            46788888888776 4555555568888888888887763322  5666667777666665542                


Q ss_pred             ------------------------ccchhhhccCCccEEEeeCCcCCCCcchhh-cCCCcccEEEecCCcCCCCcccccc
Q 030257           66 ------------------------TIPKEIGNVTKLIRLYLRGNQLQGEIPEEL-GNLAELEMLWLQNNFLTRAIPSSIF  120 (180)
Q Consensus        66 ------------------------~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~-~~~~~L~~l~l~~~~~~~~~~~~l~  120 (180)
                                              ..+..+..+++|++|++++|.+....+..+ ..+++|+.+++++|.+++. + ...
T Consensus       111 l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~  188 (317)
T 3o53_A          111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQV  188 (317)
T ss_dssp             CSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCC
T ss_pred             cCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-ccc
Confidence                                    122233344444444444444443323322 2344455555555544322 1 111


Q ss_pred             CCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCCChhh
Q 030257          121 NLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFI  168 (180)
Q Consensus       121 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~  168 (180)
                      .+++|++|++++|.+++  ++..+..+++|+.|++++|.+. .+|..+
T Consensus       189 ~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~L~~N~l~-~l~~~~  233 (317)
T 3o53_A          189 VFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKLV-LIEKAL  233 (317)
T ss_dssp             CCTTCCEEECCSSCCCE--ECGGGGGGTTCSEEECTTSCCC-EECTTC
T ss_pred             ccccCCEEECCCCcCCc--chhhhcccCcccEEECcCCccc-chhhHh
Confidence            24555666666665552  3333555666666666666666 344443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.79  E-value=4.3e-18  Score=120.64  Aligned_cols=147  Identities=29%  Similarity=0.370  Sum_probs=125.1

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   81 (180)
                      ++|+.|++.+|.+. .++.  +..+++|++|++++|.+.+..+  +..+++|++|++++|.+...  ..+..+++|++|+
T Consensus        46 ~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~  118 (291)
T 1h6t_A           46 NSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLS  118 (291)
T ss_dssp             HTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEE
T ss_pred             CcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEEE
Confidence            57899999999886 4543  4559999999999999985433  88999999999999998742  4488999999999


Q ss_pred             eeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCccc
Q 030257           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS  161 (180)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  161 (180)
                      +++|.+...  ..+..+++|+.|++++|.+.+.  ..+..+++|++|++++|.+++.  +. +..+++|+.|++++|.++
T Consensus       119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~--~~-l~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI--VP-LAGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCC
T ss_pred             CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccc--hh-hcCCCccCEEECCCCcCC
Confidence            999998743  5678899999999999999864  6778899999999999999853  33 888999999999999998


Q ss_pred             C
Q 030257          162 G  162 (180)
Q Consensus       162 ~  162 (180)
                      +
T Consensus       192 ~  192 (291)
T 1h6t_A          192 D  192 (291)
T ss_dssp             B
T ss_pred             C
Confidence            5

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.79  E-value=5.6e-18  Score=130.69  Aligned_cols=149  Identities=27%  Similarity=0.436  Sum_probs=115.0

Q ss_pred             CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (180)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   80 (180)
                      |++|+.|++++|.+. .++.  +..+++|+.|++++|.+.. . ..+..+++|+.|++++|.+...  ..+..+++|+.|
T Consensus        64 l~~L~~L~Ls~N~l~-~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L  136 (605)
T 1m9s_A           64 LPNVTKLFLNGNKLT-DIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESL  136 (605)
T ss_dssp             CTTCCEEECTTSCCC-CCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEE
T ss_pred             CCCCCEEEeeCCCCC-CChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEE
Confidence            467888888888876 3444  4558888888888888763 3 3577888888888888888743  457788888888


Q ss_pred             EeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcc
Q 030257           81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQL  160 (180)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~  160 (180)
                      ++++|.+...  ..+..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+++  + ..+..+++|+.|++++|++
T Consensus       137 ~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~--l-~~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          137 YLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD--L-RALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             ECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB--C-GGGTTCTTCSEEECCSEEE
T ss_pred             ECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC--C-hHHccCCCCCEEEccCCcC
Confidence            8888887743  567788888888888888876545  7788888999998888874  3 3477788899999998888


Q ss_pred             cCC
Q 030257          161 SGP  163 (180)
Q Consensus       161 ~~~  163 (180)
                      ...
T Consensus       210 ~~~  212 (605)
T 1m9s_A          210 LNK  212 (605)
T ss_dssp             ECC
T ss_pred             cCC
Confidence            754

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.79  E-value=2.2e-18  Score=120.50  Aligned_cols=148  Identities=24%  Similarity=0.303  Sum_probs=122.7

Q ss_pred             CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (180)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   80 (180)
                      +++|++|++.+|.+. .++ . +..+++|++|++++|.+.+.. . +..+++|++|++++|.+... +. +.. ++|++|
T Consensus        40 l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~L~~N~i~~~~-~-l~~l~~L~~L~L~~N~l~~l-~~-~~~-~~L~~L  111 (263)
T 1xeu_A           40 LSGVQNFNGDNSNIQ-SLA-G-MQFFTNLKELHLSHNQISDLS-P-LKDLTKLEELSVNRNRLKNL-NG-IPS-ACLSRL  111 (263)
T ss_dssp             HTTCSEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCG-G-GTTCSSCCEEECCSSCCSCC-TT-CCC-SSCCEE
T ss_pred             cCcCcEEECcCCCcc-cch-H-HhhCCCCCEEECCCCccCCCh-h-hccCCCCCEEECCCCccCCc-Cc-ccc-CcccEE
Confidence            368999999999887 565 3 455999999999999998544 3 88999999999999998743 32 333 899999


Q ss_pred             EeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcc
Q 030257           81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQL  160 (180)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~  160 (180)
                      ++++|.+...  ..+..+++|+.|++++|.+++.  ..+..+++|++|++++|.+++.   ..+..+++|+.|++++|++
T Consensus       112 ~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N~~  184 (263)
T 1xeu_A          112 FLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQKC  184 (263)
T ss_dssp             ECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEEEE
T ss_pred             EccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCCcc
Confidence            9999998743  4588899999999999999764  3678899999999999999853   5678899999999999998


Q ss_pred             cCC
Q 030257          161 SGP  163 (180)
Q Consensus       161 ~~~  163 (180)
                      ...
T Consensus       185 ~~~  187 (263)
T 1xeu_A          185 VNE  187 (263)
T ss_dssp             ECC
T ss_pred             cCC
Confidence            855

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.78  E-value=1.5e-18  Score=133.16  Aligned_cols=159  Identities=24%  Similarity=0.367  Sum_probs=130.8

Q ss_pred             CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCC--CCccccCCCCccEEEeccccccc-ccchhhhccCCc
Q 030257            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGK--IPSTLSNCKRLRNISLSLDDFSG-TIPKEIGNVTKL   77 (180)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L   77 (180)
                      +++|++|++++|.+.+.+|..+ .++++|++|++++|.+.+.  .+..+..+++|++|++++|.+.. .....+..+++|
T Consensus       352 l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L  430 (562)
T 3a79_B          352 PSSFTFLNFTQNVFTDSVFQGC-STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI  430 (562)
T ss_dssp             CCCCCEEECCSSCCCTTTTTTC-CSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred             CCCceEEECCCCccccchhhhh-cccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence            4689999999999986555555 5599999999999998852  34668899999999999999986 333457889999


Q ss_pred             cEEEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCccc-ccCCCCccEEEcc
Q 030257           78 IRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSL-LGNQSSLQTLYLS  156 (180)
Q Consensus        78 ~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~L~~l~l~  156 (180)
                      +++++++|.++...+..+.  ++|+.+++++|.++ .+|..+..+++|++|++++|.+++  ++.. +..+++|+.++++
T Consensus       431 ~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~l~~L~~L~l~  505 (562)
T 3a79_B          431 LVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS--VPDGVFDRLTSLQYIWLH  505 (562)
T ss_dssp             CEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC--CCTTSTTTCTTCCCEECC
T ss_pred             CEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC--CCHHHHhcCCCCCEEEec
Confidence            9999999998755444332  68999999999998 566666699999999999999983  5554 8889999999999


Q ss_pred             CCcccCCCC
Q 030257          157 YNQLSGPIP  165 (180)
Q Consensus       157 ~n~~~~~~~  165 (180)
                      +|++....+
T Consensus       506 ~N~~~c~c~  514 (562)
T 3a79_B          506 DNPWDCTCP  514 (562)
T ss_dssp             SCCBCCCHH
T ss_pred             CCCcCCCcc
Confidence            999987665

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.78  E-value=7.4e-19  Score=132.70  Aligned_cols=131  Identities=19%  Similarity=0.148  Sum_probs=88.4

Q ss_pred             CCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhh-ccCCccEEEeeCCcCCCCcchhhcCCCcccEE
Q 030257           26 LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIG-NVTKLIRLYLRGNQLQGEIPEELGNLAELEML  104 (180)
Q Consensus        26 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l  104 (180)
                      +++|+.|++++|.+.+..+..+..+++|++|++++|.+....+..+. .+++|++|++++|.+... + ....+++|+.|
T Consensus       119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L  196 (487)
T 3oja_A          119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTL  196 (487)
T ss_dssp             CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEE
T ss_pred             cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-ccccCCCCCEE
Confidence            45667777777777655566666777777777777777665555554 567777777777776633 2 22346777777


Q ss_pred             EecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCccc
Q 030257          105 WLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS  161 (180)
Q Consensus       105 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  161 (180)
                      ++++|.+++ .+..+..+++|+.|++++|.+++  +|..+..+++|+.+++++|++.
T Consensus       197 ~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          197 DLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             ECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCBC
T ss_pred             ECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc--cchhhccCCCCCEEEcCCCCCc
Confidence            777777765 33346667777777777777762  5555666777777777777766

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.78  E-value=3.3e-18  Score=111.85  Aligned_cols=137  Identities=23%  Similarity=0.186  Sum_probs=112.5

Q ss_pred             CCCccEEEcccccCC-CCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEE
Q 030257           26 LSNLESLFLKNNMFH-GKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEML  104 (180)
Q Consensus        26 l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l  104 (180)
                      .++|++|++++|.+. +..+..+..+++|+.|++++|.+...  ..+..+++|++|++++|.+....|..+..+++|+.|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            578999999999887 56777788899999999999998755  678889999999999999886567777778999999


Q ss_pred             EecCCcCCCCcc-ccccCCCCCCeEEcccCcCCCCCCc---ccccCCCCccEEEccCCcccCCCCh
Q 030257          105 WLQNNFLTRAIP-SSIFNLSSLSNLDLSVNNLTGGIIP---SLLGNQSSLQTLYLSYNQLSGPIPS  166 (180)
Q Consensus       105 ~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~l~l~~n~~~~~~~~  166 (180)
                      ++++|.+.+... ..+..+++|++|++++|.+++. .+   ..+..+++|+.|++++|.+. .+|.
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~-~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~  164 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL-NDYRESVFKLLPQLTYLDGYDREDQ-EAPD  164 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTS-TTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcch-HHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence            999999976432 6788899999999999998743 22   36788999999999999877 3443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.78  E-value=1.8e-19  Score=129.90  Aligned_cols=157  Identities=19%  Similarity=0.173  Sum_probs=92.4

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEeccc-cccc-ccchhhhccCCccE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLD-DFSG-TIPKEIGNVTKLIR   79 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~-~~~~~~~~l~~L~~   79 (180)
                      ++|++|++++|.+.+.....++.++++|++|++++|.+.+..+..+..+++|++|++++| .+.. ..+..+..+++|++
T Consensus        93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~  172 (336)
T 2ast_B           93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  172 (336)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence            567777777776653313333445777777777777666555556666777777777776 3442 23444566677777


Q ss_pred             EEeeCC-cCCCC-cchhhcCCC-cccEEEecCC--cCC-CCccccccCCCCCCeEEcccCc-CCCCCCcccccCCCCccE
Q 030257           80 LYLRGN-QLQGE-IPEELGNLA-ELEMLWLQNN--FLT-RAIPSSIFNLSSLSNLDLSVNN-LTGGIIPSLLGNQSSLQT  152 (180)
Q Consensus        80 l~l~~~-~~~~~-~~~~~~~~~-~L~~l~l~~~--~~~-~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~  152 (180)
                      |++++| .++.. .+..+..++ +|+.|++++|  .++ +..+..+..+++|++|++++|. +++. .+..+..+++|+.
T Consensus       173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~-~~~~l~~l~~L~~  251 (336)
T 2ast_B          173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND-CFQEFFQLNYLQH  251 (336)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGG-GGGGGGGCTTCCE
T ss_pred             EcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHH-HHHHHhCCCCCCE
Confidence            777766 55432 234455566 6666666666  333 2233444556666666666665 4432 3334555666666


Q ss_pred             EEccCCc
Q 030257          153 LYLSYNQ  159 (180)
Q Consensus       153 l~l~~n~  159 (180)
                      |++++|.
T Consensus       252 L~l~~~~  258 (336)
T 2ast_B          252 LSLSRCY  258 (336)
T ss_dssp             EECTTCT
T ss_pred             eeCCCCC
Confidence            6666663

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.78  E-value=1.6e-17  Score=120.26  Aligned_cols=156  Identities=26%  Similarity=0.380  Sum_probs=102.1

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   81 (180)
                      ++|++|++.+|.+. .++.  +..+++|++|++++|.+... +. +..+++|+.+++++|.+....+  +..+++|++++
T Consensus       155 ~~L~~L~l~~~~~~-~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~  227 (347)
T 4fmz_A          155 TGLNYLTVTESKVK-DVTP--IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLK  227 (347)
T ss_dssp             TTCCEEECCSSCCC-CCGG--GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEE
T ss_pred             CCCcEEEecCCCcC-Cchh--hccCCCCCEEEccCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEE
Confidence            34555555555443 2222  33355666666666655422 22 5556666666666666553322  66777888888


Q ss_pred             eeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCccc
Q 030257           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS  161 (180)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  161 (180)
                      +++|.+....+  +..+++|+.+++++|.+.+.  ..+..+++|++|++++|.+++  + ..+..+++|+.|++++|.+.
T Consensus       228 l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~L~~n~l~  300 (347)
T 4fmz_A          228 IGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD--I-SVLNNLSQLNSLFLNNNQLG  300 (347)
T ss_dssp             CCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC--C-GGGGGCTTCSEEECCSSCCC
T ss_pred             ccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC--C-hhhcCCCCCCEEECcCCcCC
Confidence            88887764322  67778888888888887653  456778888888888888874  2 34677888999999999888


Q ss_pred             CCCChhhhhh
Q 030257          162 GPIPSFILCK  171 (180)
Q Consensus       162 ~~~~~~~~~~  171 (180)
                      +..+..+..+
T Consensus       301 ~~~~~~l~~l  310 (347)
T 4fmz_A          301 NEDMEVIGGL  310 (347)
T ss_dssp             GGGHHHHHTC
T ss_pred             CcChhHhhcc
Confidence            7666666554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.77  E-value=5.9e-20  Score=132.46  Aligned_cols=174  Identities=20%  Similarity=0.248  Sum_probs=136.1

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCC-CCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGK-IPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   80 (180)
                      ++++.+++.++.+.+. +..++. +++|++|++++|.+.+. .+..+..+++|++|++++|.+....+..+..+++|++|
T Consensus        70 ~~l~~L~l~~n~l~~~-~~~~~~-~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L  147 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQP-LAEHFS-PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL  147 (336)
T ss_dssp             TTCSEEECTTCEECSC-CCSCCC-CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred             ccceEEEcCCcccccc-chhhcc-CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence            5678889988888744 334444 89999999999987744 66778889999999999998877777788889999999


Q ss_pred             EeeCC-cCCCC-cchhhcCCCcccEEEecCC-cCCCC-ccccccCCC-CCCeEEcccC--cCCCCCCcccccCCCCccEE
Q 030257           81 YLRGN-QLQGE-IPEELGNLAELEMLWLQNN-FLTRA-IPSSIFNLS-SLSNLDLSVN--NLTGGIIPSLLGNQSSLQTL  153 (180)
Q Consensus        81 ~l~~~-~~~~~-~~~~~~~~~~L~~l~l~~~-~~~~~-~~~~l~~~~-~L~~L~l~~~--~~~~~~~~~~~~~~~~L~~l  153 (180)
                      ++++| .++.. .+..+..+++|+.|++++| .+++. .+..+..++ +|++|++++|  .+++..++..+..+++|+.|
T Consensus       148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L  227 (336)
T 2ast_B          148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL  227 (336)
T ss_dssp             ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEE
T ss_pred             ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEE
Confidence            99998 56532 4555778899999999999 88653 456677888 9999999999  56544456677789999999


Q ss_pred             EccCCc-ccCCCChhhhhhccccccc
Q 030257          154 YLSYNQ-LSGPIPSFILCKFSLLDNI  178 (180)
Q Consensus       154 ~l~~n~-~~~~~~~~~~~~~~~~~~l  178 (180)
                      ++++|. +++..+..+..+ +.++.+
T Consensus       228 ~l~~~~~l~~~~~~~l~~l-~~L~~L  252 (336)
T 2ast_B          228 DLSDSVMLKNDCFQEFFQL-NYLQHL  252 (336)
T ss_dssp             ECTTCTTCCGGGGGGGGGC-TTCCEE
T ss_pred             eCCCCCcCCHHHHHHHhCC-CCCCEe
Confidence            999998 676667666555 344443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.77  E-value=5.2e-18  Score=110.87  Aligned_cols=132  Identities=25%  Similarity=0.190  Sum_probs=113.8

Q ss_pred             CCceEEEeeCCeec-ccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257            2 SSLLSIRFTNNTLF-GELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (180)
Q Consensus         2 ~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   80 (180)
                      ++++.|++++|.+. +.+|..+ ..+++|++|++++|.+...  ..+..+++|++|++++|.+....+..+..+++|++|
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~-~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLT-AEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCC-GGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             ccCCEEECCCCCCChhhHHHHH-HhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            67999999999987 4666654 5599999999999998854  778899999999999999987677888889999999


Q ss_pred             EeeCCcCCCCc-chhhcCCCcccEEEecCCcCCCCcc---ccccCCCCCCeEEcccCcCC
Q 030257           81 YLRGNQLQGEI-PEELGNLAELEMLWLQNNFLTRAIP---SSIFNLSSLSNLDLSVNNLT  136 (180)
Q Consensus        81 ~l~~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~---~~l~~~~~L~~L~l~~~~~~  136 (180)
                      ++++|.+.... +..+..+++|+.+++++|.+++..+   ..+..+++|+.|++++|.+.
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            99999988542 2678899999999999999986554   47889999999999999876

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.77  E-value=3.2e-17  Score=123.21  Aligned_cols=128  Identities=31%  Similarity=0.382  Sum_probs=57.0

Q ss_pred             CCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEE
Q 030257           26 LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLW  105 (180)
Q Consensus        26 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~  105 (180)
                      +++|++|++++|.+.+..+  +..+++|+.|++++|.+....+  +..+++|++|++++|.+....+  +..+++|+.++
T Consensus       242 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~  315 (466)
T 1o6v_A          242 LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLT  315 (466)
T ss_dssp             CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEE
T ss_pred             CCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEE
Confidence            4444444444444432211  3444444555554444442211  4444455555555544442211  34444555555


Q ss_pred             ecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCC
Q 030257          106 LQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPI  164 (180)
Q Consensus       106 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~  164 (180)
                      +++|.+.+..+  +..+++|+.|++++|.+++.   ..+..+++|+.|++++|.+++..
T Consensus       316 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~~~~  369 (466)
T 1o6v_A          316 LYFNNISDISP--VSSLTKLQRLFFYNNKVSDV---SSLANLTNINWLSAGHNQISDLT  369 (466)
T ss_dssp             CCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCBCG
T ss_pred             CcCCcCCCchh--hccCccCCEeECCCCccCCc---hhhccCCCCCEEeCCCCccCccc
Confidence            55555443322  33444555555555544421   23444555555555555554433

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.75  E-value=2.3e-17  Score=110.56  Aligned_cols=130  Identities=21%  Similarity=0.192  Sum_probs=108.9

Q ss_pred             CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (180)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   80 (180)
                      +++|++|++++|.+. .+ . .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|
T Consensus        65 l~~L~~L~l~~n~~~-~~-~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L  141 (197)
T 4ezg_A           65 AHNIKDLTINNIHAT-NY-N-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI  141 (197)
T ss_dssp             CTTCSEEEEESCCCS-CC-G-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEE
T ss_pred             CCCCCEEEccCCCCC-cc-h-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEE
Confidence            578999999999764 33 3 34559999999999999987678889999999999999999987778889999999999


Q ss_pred             EeeCCc-CCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCC
Q 030257           81 YLRGNQ-LQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG  137 (180)
Q Consensus        81 ~l~~~~-~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  137 (180)
                      ++++|. +.. .+ .+..+++|+.+++++|.+.+. + .+..+++|++|++++|.+.+
T Consensus       142 ~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          142 DLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             ECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred             EccCCCCccc-cH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence            999998 663 44 688899999999999999863 3 67889999999999998863

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.75  E-value=2.2e-17  Score=127.38  Aligned_cols=149  Identities=29%  Similarity=0.371  Sum_probs=126.0

Q ss_pred             CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (180)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   80 (180)
                      +++|+.|++.+|.+. .++ . +..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+..  ...+..+++|++|
T Consensus        42 L~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~--l~~l~~l~~L~~L  114 (605)
T 1m9s_A           42 LNSIDQIIANNSDIK-SVQ-G-IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD--LSSLKDLKKLKSL  114 (605)
T ss_dssp             HTTCCCCBCTTCCCC-CCT-T-GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC--CTTSTTCTTCCEE
T ss_pred             CCCCCEEECcCCCCC-CCh-H-HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC--ChhhccCCCCCEE
Confidence            367889999999886 454 3 4569999999999999985443  8899999999999999874  2468899999999


Q ss_pred             EeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcc
Q 030257           81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQL  160 (180)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~  160 (180)
                      ++++|.+..  ...+..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+.  +. +..+++|+.|++++|.+
T Consensus       115 ~Ls~N~l~~--l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~--~~-l~~l~~L~~L~Ls~N~i  187 (605)
T 1m9s_A          115 SLEHNGISD--INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI--VP-LAGLTKLQNLYLSKNHI  187 (605)
T ss_dssp             ECTTSCCCC--CGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCC
T ss_pred             EecCCCCCC--CccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc--hh-hccCCCCCEEECcCCCC
Confidence            999999874  35578899999999999999864  6788899999999999999853  33 88899999999999999


Q ss_pred             cCC
Q 030257          161 SGP  163 (180)
Q Consensus       161 ~~~  163 (180)
                      .+.
T Consensus       188 ~~l  190 (605)
T 1m9s_A          188 SDL  190 (605)
T ss_dssp             CBC
T ss_pred             CCC
Confidence            863

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.75  E-value=2.6e-17  Score=109.91  Aligned_cols=129  Identities=21%  Similarity=0.308  Sum_probs=95.4

Q ss_pred             eEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCc-cccCCCCccEEEecccccccccchhhhccCCccEEEee
Q 030257            5 LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPS-TLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR   83 (180)
Q Consensus         5 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~   83 (180)
                      +.++++++.+. .+|..+.   .++++|++++|.+....+. .|..+++|++|++++|.+....+..+..+++|++|+++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            46777777775 6676553   3778888888877744443 36778888888888888876667777788888888888


Q ss_pred             CCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCC
Q 030257           84 GNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG  137 (180)
Q Consensus        84 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  137 (180)
                      +|.+....+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+..
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            888776556667777888888888888876667777777888888888887763

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.75  E-value=9.6e-18  Score=111.97  Aligned_cols=132  Identities=20%  Similarity=0.295  Sum_probs=110.2

Q ss_pred             cEEEcccccCCCCCCccccCCCCccEEEecccccccccch-hhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEEecC
Q 030257           30 ESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPK-EIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQN  108 (180)
Q Consensus        30 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~  108 (180)
                      +.++++++.+. .+|..+.  .+++.|++++|.+....+. .+..+++|++|++++|.++...|..+..+++|+.|++++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            67888888886 5665443  3899999999998865554 488899999999999999877788889999999999999


Q ss_pred             CcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCCC
Q 030257          109 NFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIP  165 (180)
Q Consensus       109 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  165 (180)
                      |.+.+..+..+..+++|++|++++|.+++. .+..+..+++|+.|++++|++....+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCV-MPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEE-CTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCee-CHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            999877777788899999999999998853 56778888999999999999887655

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.75  E-value=6.2e-17  Score=121.61  Aligned_cols=148  Identities=26%  Similarity=0.375  Sum_probs=124.4

Q ss_pred             CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (180)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   80 (180)
                      +++|++|++++|.+.+ ++.  +.++++|++|++++|.+.+.. . +..+++|+.|++++|.+....+  +..+++|++|
T Consensus       242 l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~-~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L  314 (466)
T 1o6v_A          242 LTNLTDLDLANNQISN-LAP--LSGLTKLTELKLGANQISNIS-P-LAGLTALTNLELNENQLEDISP--ISNLKNLTYL  314 (466)
T ss_dssp             CTTCSEEECCSSCCCC-CGG--GTTCTTCSEEECCSSCCCCCG-G-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEE
T ss_pred             CCCCCEEECCCCcccc-chh--hhcCCCCCEEECCCCccCccc-c-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEE
Confidence            4678889999888874 333  556999999999999988443 3 7889999999999999885443  7899999999


Q ss_pred             EeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcc
Q 030257           81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQL  160 (180)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~  160 (180)
                      ++++|.+....+  +..+++|+.+++++|.+.+.  ..+..+++|+.|++++|.+++. .+  +..+++|+.|++++|.+
T Consensus       315 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~-~~--~~~l~~L~~L~l~~n~~  387 (466)
T 1o6v_A          315 TLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDL-TP--LANLTRITQLGLNDQAW  387 (466)
T ss_dssp             ECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBC-GG--GTTCTTCCEEECCCEEE
T ss_pred             ECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCcc-ch--hhcCCCCCEEeccCCcc
Confidence            999999885544  67899999999999999864  4678899999999999999854 33  78899999999999998


Q ss_pred             cC
Q 030257          161 SG  162 (180)
Q Consensus       161 ~~  162 (180)
                      ++
T Consensus       388 ~~  389 (466)
T 1o6v_A          388 TN  389 (466)
T ss_dssp             EC
T ss_pred             cC
Confidence            86

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.74  E-value=5.9e-18  Score=108.51  Aligned_cols=129  Identities=20%  Similarity=0.182  Sum_probs=101.9

Q ss_pred             CCCccEEEcccccCC-CCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEE
Q 030257           26 LSNLESLFLKNNMFH-GKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEML  104 (180)
Q Consensus        26 l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l  104 (180)
                      .+++++|++++|.+. +..+..+..+++|+.|++++|.+...  ..+..+++|+++++++|.+....|..+..+++|+.+
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            467888899888887 56777778888899999988888754  667788889999999988876567777778889999


Q ss_pred             EecCCcCCCC-ccccccCCCCCCeEEcccCcCCCCCCc---ccccCCCCccEEEccC
Q 030257          105 WLQNNFLTRA-IPSSIFNLSSLSNLDLSVNNLTGGIIP---SLLGNQSSLQTLYLSY  157 (180)
Q Consensus       105 ~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~l~l~~  157 (180)
                      ++++|.+.+. .+..+..+++|++|++++|.+++. .+   ..+..+++|+.|++++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL-NDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGS-TTHHHHHHHHCTTCCEETTBC
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccch-HHHHHHHHHHCCCcccccCCC
Confidence            9999988753 236778888999999999988743 22   3577788899888753

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.73  E-value=4.4e-17  Score=108.82  Aligned_cols=127  Identities=31%  Similarity=0.410  Sum_probs=88.1

Q ss_pred             eEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeC
Q 030257            5 LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG   84 (180)
Q Consensus         5 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~   84 (180)
                      +.++++++.+. .+|..+.   +++++|++++|.+. ..|..|..+++|+.|++++|.+....+..|..+++|++|++++
T Consensus        13 ~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP---RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC---TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCCC-cCCCCCC---CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            35666666665 5665542   46777777777776 5556677777777777777777766666677777777777777


Q ss_pred             CcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCC
Q 030257           85 NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT  136 (180)
Q Consensus        85 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  136 (180)
                      |.++...+..+..+++|+.|++++|.+....+..+..+++|+.+++++|.+.
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            7777555566777777777777777776544456667777777777777654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.73  E-value=1.2e-17  Score=107.02  Aligned_cols=126  Identities=24%  Similarity=0.220  Sum_probs=63.5

Q ss_pred             CceEEEeeCCeec-ccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257            3 SLLSIRFTNNTLF-GELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (180)
Q Consensus         3 ~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   81 (180)
                      +++.|++++|.+. +.+|..+ ..+++|++|++++|.+...  ..+..+++|++|++++|.+....|..+..+++|++++
T Consensus        18 ~l~~L~l~~n~l~~~~~~~~~-~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEGLT-DEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCSCC-TTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             cCeEEEccCCcCChhHHHHHH-hhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            4555555555554 3344322 2355555555555555433  4445555555555555555543444444555555555


Q ss_pred             eeCCcCCCC-cchhhcCCCcccEEEecCCcCCCCcc---ccccCCCCCCeEEcc
Q 030257           82 LRGNQLQGE-IPEELGNLAELEMLWLQNNFLTRAIP---SSIFNLSSLSNLDLS  131 (180)
Q Consensus        82 l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~~---~~l~~~~~L~~L~l~  131 (180)
                      +++|.+... .+..+..+++|+.+++++|.+++..+   ..+..+++|+.|+++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            555555432 12444555555555555555544332   244455555555543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.72  E-value=3.3e-18  Score=124.72  Aligned_cols=109  Identities=21%  Similarity=0.212  Sum_probs=56.8

Q ss_pred             CceEEEeeCCeecccCch----hhhhcCC-CccEEEcccccCCCCCCccccCC-----CCccEEEecccccccccchhhh
Q 030257            3 SLLSIRFTNNTLFGELPP----NFCNHLS-NLESLFLKNNMFHGKIPSTLSNC-----KRLRNISLSLDDFSGTIPKEIG   72 (180)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~   72 (180)
                      +|++|++++|.+. ..+.    ..+.+++ +|++|++++|.+.+..+..+..+     ++|++|++++|.+....+..+.
T Consensus        23 ~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  101 (362)
T 3goz_A           23 GVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV  101 (362)
T ss_dssp             TCCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             CceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence            3666666666665 3332    3334455 66666666666654444444432     6666666666665543333222


Q ss_pred             ----cc-CCccEEEeeCCcCCCCcchh----hcC-CCcccEEEecCCcCC
Q 030257           73 ----NV-TKLIRLYLRGNQLQGEIPEE----LGN-LAELEMLWLQNNFLT  112 (180)
Q Consensus        73 ----~l-~~L~~l~l~~~~~~~~~~~~----~~~-~~~L~~l~l~~~~~~  112 (180)
                          .+ ++|++|++++|.+....+..    +.. .++|+.|++++|.+.
T Consensus       102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  151 (362)
T 3goz_A          102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG  151 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred             HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence                22 55666666666554333322    222 235555555555554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.72  E-value=7.2e-19  Score=129.18  Aligned_cols=38  Identities=21%  Similarity=0.282  Sum_probs=17.5

Q ss_pred             CCCccEEEcccccCCC----CCCccccCCCCccEEEeccccc
Q 030257           26 LSNLESLFLKNNMFHG----KIPSTLSNCKRLRNISLSLDDF   63 (180)
Q Consensus        26 l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~   63 (180)
                      +++|++|++++|.+..    .++..+..+++|++|++++|.+
T Consensus        93 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l  134 (386)
T 2ca6_A           93 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL  134 (386)
T ss_dssp             CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred             CCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence            4555555555554443    1233334444444444444444

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.72  E-value=2.2e-16  Score=104.02  Aligned_cols=128  Identities=25%  Similarity=0.269  Sum_probs=71.1

Q ss_pred             eEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeC
Q 030257            5 LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG   84 (180)
Q Consensus         5 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~   84 (180)
                      +.+++.++.+. .+|..+   .+++++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++
T Consensus        10 ~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A           10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            34555555554 445433   24566666666666544444455566666666666666544444455566666666666


Q ss_pred             CcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCC
Q 030257           85 NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT  136 (180)
Q Consensus        85 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  136 (180)
                      |.++...+..+..+++|+.+++++|.+.+..+..+..+++|+++++++|.+.
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence            6655433344555566666666666655443344455556666666665554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.71  E-value=2.9e-16  Score=103.41  Aligned_cols=133  Identities=20%  Similarity=0.271  Sum_probs=111.2

Q ss_pred             ccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEEecC
Q 030257           29 LESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQN  108 (180)
Q Consensus        29 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~  108 (180)
                      .+.+++.++.+. ..|..+  .++++.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.+++++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            467888888877 444433  36899999999999877667788999999999999999865566678999999999999


Q ss_pred             CcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCCC
Q 030257          109 NFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIP  165 (180)
Q Consensus       109 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  165 (180)
                      |.+++..+..+..+++|++|++++|.+++. .+..+..+++|+.+++++|++....+
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSV-PDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEe-CHHHhcCCcccCEEEecCCCeeccCc
Confidence            999977777788999999999999999842 44456789999999999999987665

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.71  E-value=3.1e-16  Score=104.74  Aligned_cols=130  Identities=22%  Similarity=0.270  Sum_probs=111.4

Q ss_pred             cEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEEecCC
Q 030257           30 ESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNN  109 (180)
Q Consensus        30 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~  109 (180)
                      +.++++++.+. .+|..+  .++++.|++++|.+. ..|..+..+++|++|++++|.++...+..+..+++|+.|++++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            57888888887 556544  368999999999998 56688999999999999999998777778999999999999999


Q ss_pred             cCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCC
Q 030257          110 FLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPI  164 (180)
Q Consensus       110 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~  164 (180)
                      .+.+..+..+..+++|+.|++++|.++.. .+..+..+++|+.+++++|++....
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~~~C~c  142 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVV-PEGAFNDLSALSHLAIGANPLYCDC  142 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTTTCTTCCEEECCSSCEECSG
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCee-ChhhhhcCccccEEEeCCCCeecCC
Confidence            99987778899999999999999999842 4446788999999999999986543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.71  E-value=3.9e-18  Score=125.27  Aligned_cols=112  Identities=26%  Similarity=0.293  Sum_probs=47.2

Q ss_pred             CCccEEEecccccc-cccc---hhhhccCCccEEEeeCCcCCCC-----cchhhcCCCcccEEEecCCcCC----CCccc
Q 030257           51 KRLRNISLSLDDFS-GTIP---KEIGNVTKLIRLYLRGNQLQGE-----IPEELGNLAELEMLWLQNNFLT----RAIPS  117 (180)
Q Consensus        51 ~~L~~L~l~~~~~~-~~~~---~~~~~l~~L~~l~l~~~~~~~~-----~~~~~~~~~~L~~l~l~~~~~~----~~~~~  117 (180)
                      ++|++|++++|.+. ...+   ..+..+++|++|++++|.+...     .+..+..+++|+.|++++|.++    ..++.
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence            44555555554443 1111   2333444555555555444311     1113344445555555555442    22333


Q ss_pred             cccCCCCCCeEEcccCcCCCCC---Ccccc--cCCCCccEEEccCCcccC
Q 030257          118 SIFNLSSLSNLDLSVNNLTGGI---IPSLL--GNQSSLQTLYLSYNQLSG  162 (180)
Q Consensus       118 ~l~~~~~L~~L~l~~~~~~~~~---~~~~~--~~~~~L~~l~l~~n~~~~  162 (180)
                      .+..+++|++|++++|.+++..   ++..+  ..+++|+.|++++|.+++
T Consensus       239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence            4444455555555555444210   11222  124455555555555543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.71  E-value=2.5e-17  Score=115.10  Aligned_cols=145  Identities=25%  Similarity=0.360  Sum_probs=117.3

Q ss_pred             ceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEee
Q 030257            4 LLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR   83 (180)
Q Consensus         4 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~   83 (180)
                      +..+++.++.+. .++ . +..+++|++|++++|.+. ..+ .+..+++|+.|++++|.+....+  +..+++|++|+++
T Consensus        21 l~~l~l~~~~i~-~~~-~-~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~   93 (263)
T 1xeu_A           21 AVKQNLGKQSVT-DLV-S-QKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHTCSCTT-SEE-C-HHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred             HHHHHhcCCCcc-ccc-c-hhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence            344556666665 344 2 345899999999999987 444 68899999999999999985544  8899999999999


Q ss_pred             CCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCC
Q 030257           84 GNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGP  163 (180)
Q Consensus        84 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~  163 (180)
                      +|.+.. .+. +.. ++|+.|++++|.+.+.  ..+..+++|++|++++|.+++  ++ .+..+++|+.|++++|.+.+.
T Consensus        94 ~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~--~~-~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A           94 RNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS--IV-MLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             SSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB--CG-GGGGCTTCCEEECTTSCCCBC
T ss_pred             CCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCC--Ch-HHccCCCCCEEECCCCcCcch
Confidence            999874 333 233 8999999999999753  458889999999999999985  33 678899999999999999865

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.71  E-value=8.7e-18  Score=122.48  Aligned_cols=166  Identities=24%  Similarity=0.291  Sum_probs=102.0

Q ss_pred             CceEEEeeCCeecccCchhhhh---c-CCCccEEEcccccCCCCCCccc----cCC-CCccEEEecccccccccchhhhc
Q 030257            3 SLLSIRFTNNTLFGELPPNFCN---H-LSNLESLFLKNNMFHGKIPSTL----SNC-KRLRNISLSLDDFSGTIPKEIGN   73 (180)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~---~-l~~L~~L~l~~~~~~~~~~~~~----~~l-~~L~~L~l~~~~~~~~~~~~~~~   73 (180)
                      +|++|++++|.+.+..+..+..   . .++|++|++++|.+.+..+..+    ..+ ++|++|++++|.+....+..+..
T Consensus        52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  131 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ  131 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence            6888888888877444444333   1 2788888888887775444433    334 67888888888776554444332


Q ss_pred             -----cCCccEEEeeCCcCCCCcc----hhhcCCC-cccEEEecCCcCCCCccc----cccCC-CCCCeEEcccCcCCCC
Q 030257           74 -----VTKLIRLYLRGNQLQGEIP----EELGNLA-ELEMLWLQNNFLTRAIPS----SIFNL-SSLSNLDLSVNNLTGG  138 (180)
Q Consensus        74 -----l~~L~~l~l~~~~~~~~~~----~~~~~~~-~L~~l~l~~~~~~~~~~~----~l~~~-~~L~~L~l~~~~~~~~  138 (180)
                           ..+|++|++++|.+.....    ..+...+ +|+.|++++|.+++..+.    .+... ++|++|++++|.+.+.
T Consensus       132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~  211 (362)
T 3goz_A          132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLK  211 (362)
T ss_dssp             HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred             HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChh
Confidence                 2578888888877664332    2334443 778888888777654443    23344 4777777777777642


Q ss_pred             C---CcccccC-CCCccEEEccCCcccCCCChhh
Q 030257          139 I---IPSLLGN-QSSLQTLYLSYNQLSGPIPSFI  168 (180)
Q Consensus       139 ~---~~~~~~~-~~~L~~l~l~~n~~~~~~~~~~  168 (180)
                      .   ++..+.. .++|+.|++++|.+.+..++.+
T Consensus       212 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l  245 (362)
T 3goz_A          212 SYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENL  245 (362)
T ss_dssp             CHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHH
T ss_pred             HHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHH
Confidence            1   2223333 3577777777777776554443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.70  E-value=9.7e-17  Score=116.47  Aligned_cols=162  Identities=20%  Similarity=0.228  Sum_probs=108.5

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCC-CccccCCCCccE-EEecccccccccchhhhccCCccE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKI-PSTLSNCKRLRN-ISLSLDDFSGTIPKEIGNVTKLIR   79 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~-L~l~~~~~~~~~~~~~~~l~~L~~   79 (180)
                      +++++|++++|.+. .+|.+.+.++++|++|++++|.+.+.. +.+|.+++++.. +.+..+.+....++.+..+++|++
T Consensus        30 ~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~  108 (350)
T 4ay9_X           30 RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY  108 (350)
T ss_dssp             TTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred             CCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence            47899999999987 788888888999999999999876443 346777877765 445567777666777888888888


Q ss_pred             EEeeCCcCCCCcchhhcCCC--------------------------cccEEEecCCcCCCCccccccCCCCCCeEEccc-
Q 030257           80 LYLRGNQLQGEIPEELGNLA--------------------------ELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSV-  132 (180)
Q Consensus        80 l~l~~~~~~~~~~~~~~~~~--------------------------~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~-  132 (180)
                      +++.+|.+....+..+....                          .++.+++++|.++. ++.......+++++++++ 
T Consensus       109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~  187 (350)
T 4ay9_X          109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDN  187 (350)
T ss_dssp             EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTC
T ss_pred             ccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-CChhhccccchhHHhhccC
Confidence            88888876533222222222                          34556666666653 333333345667777764 


Q ss_pred             CcCCCCCCcccccCCCCccEEEccCCcccCCCCh
Q 030257          133 NNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPS  166 (180)
Q Consensus       133 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  166 (180)
                      |.++ ...+..+..+++|+.|++++|.++...+.
T Consensus       188 n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~  220 (350)
T 4ay9_X          188 NNLE-ELPNDVFHGASGPVILDISRTRIHSLPSY  220 (350)
T ss_dssp             TTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSS
T ss_pred             Cccc-CCCHHHhccCcccchhhcCCCCcCccChh
Confidence            3444 22334567788899999999988854333

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.70  E-value=2.1e-16  Score=114.70  Aligned_cols=122  Identities=20%  Similarity=0.183  Sum_probs=91.5

Q ss_pred             eEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEeccccccccc-chhhhccCCccE-EEe
Q 030257            5 LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTI-PKEIGNVTKLIR-LYL   82 (180)
Q Consensus         5 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~-l~l   82 (180)
                      +.++.+++.++ .+|.++   .+++++|++++|++....+.+|.++++|++|++++|.+.... +..|.+++++.+ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            46777788877 788776   357999999999998555668999999999999999985444 456788988776 456


Q ss_pred             eCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEc
Q 030257           83 RGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDL  130 (180)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l  130 (180)
                      ..|.+....+..+..+++|+.+++++|.+....+..+....++..+++
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l  135 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDI  135 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEE
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhh
Confidence            668888666778999999999999999886543333333333334443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.69  E-value=1.3e-15  Score=114.11  Aligned_cols=148  Identities=20%  Similarity=0.157  Sum_probs=87.4

Q ss_pred             CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccc------------
Q 030257            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIP------------   68 (180)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~------------   68 (180)
                      +++|++|++++|.+.+ ++   +.++++|++|++++|.+.+ .+  +..+++|++|++++|.+.....            
T Consensus        84 l~~L~~L~Ls~N~l~~-~~---~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~  156 (457)
T 3bz5_A           84 NTNLTYLACDSNKLTN-LD---VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCH  156 (457)
T ss_dssp             CTTCSEEECCSSCCSC-CC---CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECT
T ss_pred             CCCCCEEECcCCCCce-ee---cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccceeccccCCcCCEEECC
Confidence            3567777777776653 33   3346677777777766653 22  5566666666666666553210            


Q ss_pred             -------hhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCc
Q 030257           69 -------KEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIP  141 (180)
Q Consensus        69 -------~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  141 (180)
                             -.+..+++|+++++++|.++. .+  +..+++|+.+++++|.+++.   .+..+++|+.|++++|.+++  ++
T Consensus       157 ~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~--ip  228 (457)
T 3bz5_A          157 LNKKITKLDVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE--ID  228 (457)
T ss_dssp             TCSCCCCCCCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC--CC
T ss_pred             CCCcccccccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc--cC
Confidence                   023344555555555555543 22  44556666666666666543   25566777777777777764  33


Q ss_pred             ccccCCCCccEEEccCCcccCCCC
Q 030257          142 SLLGNQSSLQTLYLSYNQLSGPIP  165 (180)
Q Consensus       142 ~~~~~~~~L~~l~l~~n~~~~~~~  165 (180)
                        +..+++|+.|++++|.+++..+
T Consensus       229 --~~~l~~L~~L~l~~N~l~~~~~  250 (457)
T 3bz5_A          229 --VTPLTQLTYFDCSVNPLTELDV  250 (457)
T ss_dssp             --CTTCTTCSEEECCSSCCSCCCC
T ss_pred             --ccccCCCCEEEeeCCcCCCcCH
Confidence              5667777888888777775443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.69  E-value=2.5e-16  Score=120.60  Aligned_cols=147  Identities=24%  Similarity=0.297  Sum_probs=71.2

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   81 (180)
                      ++|++|++++|.+. .+|    ..+++|++|++++|.+.+ +|. +..  +|+.|++++|.+.. .|.   .+++|++|+
T Consensus        80 ~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~  146 (571)
T 3cvr_A           80 PQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYIN  146 (571)
T ss_dssp             TTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEE
T ss_pred             CCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEe
Confidence            34666666666655 455    224556666666665553 333 322  55555555555443 222   344444444


Q ss_pred             eeCCcCCC-------------------CcchhhcCCCcccEEEecCCcCCCCccccccCCCCC-------CeEEcccCcC
Q 030257           82 LRGNQLQG-------------------EIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSL-------SNLDLSVNNL  135 (180)
Q Consensus        82 l~~~~~~~-------------------~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L-------~~L~l~~~~~  135 (180)
                      +++|.++.                   ..|. +.  ++|+.|++++|.++ .+|. +..  +|       +.|++++|.+
T Consensus       147 Ls~N~l~~lp~~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l  219 (571)
T 3cvr_A          147 ADNNQLTMLPELPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRI  219 (571)
T ss_dssp             CCSSCCSCCCCCCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCC
T ss_pred             CCCCccCcCCCcCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcc
Confidence            44444442                   1222 22  44555555555554 2232 222  33       5555555555


Q ss_pred             CCCCCcccccCCCCccEEEccCCcccCCCChhhhh
Q 030257          136 TGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILC  170 (180)
Q Consensus       136 ~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~  170 (180)
                      +  .+|..+..+++|+.|++++|++++.+|..+..
T Consensus       220 ~--~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          220 T--HIPENILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             C--CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             e--ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence            5  24444444566666666666665555555443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.68  E-value=1.6e-15  Score=116.11  Aligned_cols=134  Identities=29%  Similarity=0.355  Sum_probs=97.3

Q ss_pred             CceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEe
Q 030257            3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL   82 (180)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l   82 (180)
                      +++.|++++|.+. .+|..+   +++|++|++++|.+. .+|   ..+++|++|++++|.+.. .|. +..  +|++|++
T Consensus        60 ~L~~L~Ls~n~L~-~lp~~l---~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRLNLS-SLPDNL---PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TCSEEECCSSCCS-CCCSCC---CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred             CccEEEeCCCCCC-ccCHhH---cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence            7899999999987 488766   378999999999998 566   457899999999999985 555 554  9999999


Q ss_pred             eCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCccc
Q 030257           83 RGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS  161 (180)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  161 (180)
                      ++|.++. +|.   .+++|+.|++++|.+++ ++.   .+++|++|++++|.+++  ++. +.  ++|+.|++++|.++
T Consensus       128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~--lp~-l~--~~L~~L~Ls~N~L~  193 (571)
T 3cvr_A          128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF--LPE-LP--ESLEALDVSTNLLE  193 (571)
T ss_dssp             CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC--CCC-CC--TTCCEEECCSSCCS
T ss_pred             CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC--cch-hh--CCCCEEECcCCCCC
Confidence            9999885 444   56778888888887765 333   34566666666666553  333 22  45555555555544

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.68  E-value=2.1e-15  Score=113.07  Aligned_cols=142  Identities=20%  Similarity=0.179  Sum_probs=101.0

Q ss_pred             CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (180)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   80 (180)
                      +++|++|++++|.+.+ ++   +.++++|++|++++|.+.+. +  +..+++|++|++++|.+... +  +..+++|++|
T Consensus        63 l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L  132 (457)
T 3bz5_A           63 LTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYL  132 (457)
T ss_dssp             CTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEE
T ss_pred             cCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEE
Confidence            5789999999999874 54   45699999999999998853 3  88999999999999998853 3  7888999999


Q ss_pred             EeeCCcCCCCcchhhcCCCcccEEEecCC----------------------cCCCCccccccCCCCCCeEEcccCcCCCC
Q 030257           81 YLRGNQLQGEIPEELGNLAELEMLWLQNN----------------------FLTRAIPSSIFNLSSLSNLDLSVNNLTGG  138 (180)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~----------------------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  138 (180)
                      ++++|.++.. +  +..+++|+.+++++|                      .+++ .+  +..+++|+.|++++|.+++.
T Consensus       133 ~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~  206 (457)
T 3bz5_A          133 NCARNTLTEI-D--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL  206 (457)
T ss_dssp             ECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC
T ss_pred             ECCCCcccee-c--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee
Confidence            9999987743 2  445555555555555                      3332 11  34445555555555555431


Q ss_pred             CCcccccCCCCccEEEccCCcccC
Q 030257          139 IIPSLLGNQSSLQTLYLSYNQLSG  162 (180)
Q Consensus       139 ~~~~~~~~~~~L~~l~l~~n~~~~  162 (180)
                          .+..+++|+.|++++|.+++
T Consensus       207 ----~l~~l~~L~~L~Ls~N~l~~  226 (457)
T 3bz5_A          207 ----DLNQNIQLTFLDCSSNKLTE  226 (457)
T ss_dssp             ----CCTTCTTCSEEECCSSCCSC
T ss_pred             ----ccccCCCCCEEECcCCcccc
Confidence                24556677777777777765

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.68  E-value=7.3e-17  Score=127.01  Aligned_cols=123  Identities=28%  Similarity=0.315  Sum_probs=78.6

Q ss_pred             CCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccC
Q 030257           42 KIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFN  121 (180)
Q Consensus        42 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~  121 (180)
                      ..+..+..+..|+.|++++|.+. ..+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.++ .+|..+..
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~  291 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS  291 (727)
T ss_dssp             -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred             cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence            34555666777777777777766 44444556777777777777766 55666666777777777777776 45666667


Q ss_pred             CCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCCChhhh
Q 030257          122 LSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFIL  169 (180)
Q Consensus       122 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~  169 (180)
                      +++|++|++++|.++  .+|..+..+++|+.|++++|.+++.+|..+.
T Consensus       292 l~~L~~L~L~~N~l~--~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~  337 (727)
T 4b8c_D          292 CFQLKYFYFFDNMVT--TLPWEFGNLCNLQFLGVEGNPLEKQFLKILT  337 (727)
T ss_dssp             GTTCSEEECCSSCCC--CCCSSTTSCTTCCCEECTTSCCCSHHHHHHH
T ss_pred             CCCCCEEECCCCCCC--ccChhhhcCCCccEEeCCCCccCCCChHHHh
Confidence            777777777777665  3555566677777777777777766665553

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.67  E-value=2.9e-16  Score=103.34  Aligned_cols=130  Identities=18%  Similarity=0.162  Sum_probs=94.2

Q ss_pred             cCCCccEEEcccccCCCCCCccccCCC-CccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccE
Q 030257           25 HLSNLESLFLKNNMFHGKIPSTLSNCK-RLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEM  103 (180)
Q Consensus        25 ~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~  103 (180)
                      .+.+|++|++++|.+. ..+. +..+. +|+.|++++|.+...  ..+..+++|++|++++|.+....+..+..+++|+.
T Consensus        17 ~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             CTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             CcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            3677888888888777 3343 44444 888888888887744  56777888888888888877443344577788888


Q ss_pred             EEecCCcCCCCccc--cccCCCCCCeEEcccCcCCCCCCcc----cccCCCCccEEEccCCccc
Q 030257          104 LWLQNNFLTRAIPS--SIFNLSSLSNLDLSVNNLTGGIIPS----LLGNQSSLQTLYLSYNQLS  161 (180)
Q Consensus       104 l~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~~L~~l~l~~n~~~  161 (180)
                      +++++|.+.+ .+.  .+..+++|+.|++++|.+++  .+.    .+..+++|+.+++++|...
T Consensus        93 L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~--~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           93 LILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN--KKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG--STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC--cHhHHHHHHHHCCccceeCCCcCCHH
Confidence            8888888854 443  67778888888888888763  344    3677888888888887654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.66  E-value=3.5e-18  Score=130.97  Aligned_cols=109  Identities=26%  Similarity=0.277  Sum_probs=95.4

Q ss_pred             CccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcc
Q 030257           52 RLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLS  131 (180)
Q Consensus        52 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~  131 (180)
                      .|+.|++++|.+.. .|. +..+++|++|++++|.+. ..|..+..+++|+.|++++|.+++ +| .+..+++|+.|+++
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence            57889999999885 455 899999999999999998 678889999999999999999986 55 78899999999999


Q ss_pred             cCcCCCCCCcccccCCCCccEEEccCCcccCCCC
Q 030257          132 VNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIP  165 (180)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  165 (180)
                      +|.+++...|..+..+++|+.|++++|++++..+
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            9999854227889999999999999999986554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.66  E-value=2.5e-17  Score=129.62  Aligned_cols=145  Identities=26%  Similarity=0.349  Sum_probs=106.7

Q ss_pred             CchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcC
Q 030257           18 LPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGN   97 (180)
Q Consensus        18 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~   97 (180)
                      ++...+..+..|+.|++++|.+. .++..+..+++|++|++++|.+. ..|..+..+++|++|++++|.++ .+|..+..
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~  291 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS  291 (727)
T ss_dssp             -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred             cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence            34555666899999999999988 66766778999999999999988 67788899999999999999988 56888888


Q ss_pred             CCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCC-CccEEEccCCcccCCCChh
Q 030257           98 LAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQS-SLQTLYLSYNQLSGPIPSF  167 (180)
Q Consensus        98 ~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~l~l~~n~~~~~~~~~  167 (180)
                      +++|+.|++++|.+. .+|..+..+++|+.|++++|.+++. .+..+.... ....+++++|.+++.+|..
T Consensus       292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~~~~~~~~l~l~~N~l~~~~p~~  360 (727)
T 4b8c_D          292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQ-FLKILTEKSVTGLIFYLRDNRPEIPLPHE  360 (727)
T ss_dssp             GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSH-HHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred             CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCC-ChHHHhhcchhhhHHhhccCcccCcCccc
Confidence            999999999999987 5677788999999999999998753 333332211 1122444445444444443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.66  E-value=5.6e-18  Score=126.90  Aligned_cols=161  Identities=22%  Similarity=0.193  Sum_probs=76.9

Q ss_pred             CCceEEEeeCCeeccc----CchhhhhcCCCccEEEcccccCCCCC-----CccccCCCCccEEEecccccccc----cc
Q 030257            2 SSLLSIRFTNNTLFGE----LPPNFCNHLSNLESLFLKNNMFHGKI-----PSTLSNCKRLRNISLSLDDFSGT----IP   68 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~-----~~~~~~l~~L~~L~l~~~~~~~~----~~   68 (180)
                      ++|++|++++|.+.+.    ++. .+..+++|++|++++|.+.+..     +..+..+++|++|++++|.+...    .+
T Consensus       199 ~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~  277 (461)
T 1z7x_W          199 CQLEALKLESCGVTSDNCRDLCG-IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC  277 (461)
T ss_dssp             CCCCEEECTTSCCBTTHHHHHHH-HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred             CCceEEEccCCCCcHHHHHHHHH-HHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHH
Confidence            3566666666665532    122 2223566666666666544211     11112345555555555555422    23


Q ss_pred             hhhhccCCccEEEeeCCcC-----------------------------CCC----cchhhcCCCcccEEEecCCcCCCCc
Q 030257           69 KEIGNVTKLIRLYLRGNQL-----------------------------QGE----IPEELGNLAELEMLWLQNNFLTRAI  115 (180)
Q Consensus        69 ~~~~~l~~L~~l~l~~~~~-----------------------------~~~----~~~~~~~~~~L~~l~l~~~~~~~~~  115 (180)
                      ..+..+++|++|++++|.+                             +..    .+..+..+++|+.+++++|.+.+..
T Consensus       278 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~  357 (461)
T 1z7x_W          278 RVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG  357 (461)
T ss_dssp             HHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHH
T ss_pred             HHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccccc
Confidence            3344445555555555544                             322    1223334455555555555554322


Q ss_pred             ccccc-----CCCCCCeEEcccCcCCCC---CCcccccCCCCccEEEccCCcccCC
Q 030257          116 PSSIF-----NLSSLSNLDLSVNNLTGG---IIPSLLGNQSSLQTLYLSYNQLSGP  163 (180)
Q Consensus       116 ~~~l~-----~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~L~~l~l~~n~~~~~  163 (180)
                      +..+.     ..++|++|++++|.+++.   .++..+..+++|+.|++++|++++.
T Consensus       358 ~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          358 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             HHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence            22221     144566666666665531   1334455566666666666666543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.65  E-value=2.8e-17  Score=123.12  Aligned_cols=63  Identities=22%  Similarity=0.242  Sum_probs=28.6

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCC----CccEEEcccccCCC----CCCccccCCCCccEEEecccccc
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLS----NLESLFLKNNMFHG----KIPSTLSNCKRLRNISLSLDDFS   64 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~----~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~   64 (180)
                      ++|++|++++|.+.+..+..++..++    +|++|++++|.+..    ..+..+..+++|++|++++|.+.
T Consensus        56 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  126 (461)
T 1z7x_W           56 PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  126 (461)
T ss_dssp             TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCc
Confidence            34455555554443322333333333    35555555554442    12344445555555555555443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.65  E-value=4.8e-16  Score=102.28  Aligned_cols=130  Identities=15%  Similarity=0.197  Sum_probs=105.0

Q ss_pred             CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (180)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   80 (180)
                      +++|+.|++++|.+. .++ .+....++|++|++++|.+.+.  ..+..+++|++|++++|.+....+..+..+++|++|
T Consensus        18 ~~~L~~L~l~~n~l~-~i~-~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           18 AVRDRELDLRGYKIP-VIE-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   93 (176)
T ss_dssp             TTSCEEEECTTSCCC-SCC-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             cCCceEEEeeCCCCc-hhH-HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence            367899999999887 454 4555355999999999998843  678889999999999999986555556889999999


Q ss_pred             EeeCCcCCCCcch--hhcCCCcccEEEecCCcCCCCccc----cccCCCCCCeEEcccCcCC
Q 030257           81 YLRGNQLQGEIPE--ELGNLAELEMLWLQNNFLTRAIPS----SIFNLSSLSNLDLSVNNLT  136 (180)
Q Consensus        81 ~l~~~~~~~~~~~--~~~~~~~L~~l~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~  136 (180)
                      ++++|.+.. .+.  .+..+++|+.+++++|++.. .+.    .+..+++|+.|++++|...
T Consensus        94 ~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           94 ILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             ECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             ECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence            999999863 444  67888999999999999974 344    4778899999999998765

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.62  E-value=4.3e-15  Score=106.91  Aligned_cols=173  Identities=14%  Similarity=0.134  Sum_probs=127.1

Q ss_pred             CCCceEEEeeCCeecc-------------------cCchhhhhc--------CCCccEEEcccccCCCCCCccccCCCCc
Q 030257            1 MSSLLSIRFTNNTLFG-------------------ELPPNFCNH--------LSNLESLFLKNNMFHGKIPSTLSNCKRL   53 (180)
Q Consensus         1 l~~L~~L~l~~~~~~~-------------------~~~~~~~~~--------l~~L~~L~l~~~~~~~~~~~~~~~l~~L   53 (180)
                      +++|+.|++++|.+..                   .+|...|.+        +.+|+.+.+.+ .+......+|.+|++|
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L  126 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL  126 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence            4678999999888760                   356677777        89999999988 7776677788899999


Q ss_pred             cEEEecccccccccchhhh-------------------------------------------------------------
Q 030257           54 RNISLSLDDFSGTIPKEIG-------------------------------------------------------------   72 (180)
Q Consensus        54 ~~L~l~~~~~~~~~~~~~~-------------------------------------------------------------   72 (180)
                      +.+++.++.+....+..|.                                                             
T Consensus       127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~  206 (329)
T 3sb4_A          127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF  206 (329)
T ss_dssp             CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred             ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence            9999988764211111100                                                             


Q ss_pred             -----------------ccCCccEEEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCC-eEEcccCc
Q 030257           73 -----------------NVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLS-NLDLSVNN  134 (180)
Q Consensus        73 -----------------~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~-~L~l~~~~  134 (180)
                                       .+++|+.+++.+|.+......+|.+|++|+.+++..| +......+|.++.+|+ .+++.+ .
T Consensus       207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~  284 (329)
T 3sb4_A          207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-S  284 (329)
T ss_dssp             EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-T
T ss_pred             EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-c
Confidence                             2678899999988887666668899999999999887 6555557888999999 999988 5


Q ss_pred             CCCCCCcccccCCCCccEEEccCCcccCCCChhhhhhccccccc
Q 030257          135 LTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKFSLLDNI  178 (180)
Q Consensus       135 ~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~l  178 (180)
                      ++. ..+.++..|++|+.+++.+|.+....+..|..+ ..++.+
T Consensus       285 l~~-I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~-~~L~~l  326 (329)
T 3sb4_A          285 VTA-IEFGAFMGCDNLRYVLATGDKITTLGDELFGNG-VPSKLI  326 (329)
T ss_dssp             CCE-ECTTTTTTCTTEEEEEECSSCCCEECTTTTCTT-CCCCEE
T ss_pred             ceE-EchhhhhCCccCCEEEeCCCccCccchhhhcCC-cchhhh
Confidence            542 345678899999999999999885444455444 444444

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.60  E-value=1.5e-17  Score=111.50  Aligned_cols=153  Identities=23%  Similarity=0.282  Sum_probs=112.9

Q ss_pred             CceEEEeeCCeecccCch------hhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCC
Q 030257            3 SLLSIRFTNNTLFGELPP------NFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTK   76 (180)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~   76 (180)
                      .++.+++.++.+.+.+|.      .+ ..+++|++|++++|.+.. .+ .+..+++|++|++++|.+. ..|..+..+++
T Consensus        19 ~l~~l~l~~~~l~~~~~~l~~l~~~~-~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~   94 (198)
T 1ds9_A           19 SVVATEAEKVELHGMIPPIEKMDATL-STLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT   94 (198)
T ss_dssp             CCCCTTCSEEECCBCCTTCCCCHHHH-HHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred             cccCcchheeEeccccCcHhhhhHHH-hcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence            344444555555444433      44 459999999999998884 55 7888999999999999887 55666777889


Q ss_pred             ccEEEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCcc-ccccCCCCCCeEEcccCcCCCCCCc----------cccc
Q 030257           77 LIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIP-SSIFNLSSLSNLDLSVNNLTGGIIP----------SLLG  145 (180)
Q Consensus        77 L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~----------~~~~  145 (180)
                      |++|++++|.+.. .+ .+..+++|+.+++++|.+.+... ..+..+++|++|++++|.+.+. .+          ..+.
T Consensus        95 L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~-~~~~~~~~~~~~~~~~  171 (198)
T 1ds9_A           95 LEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND-YKENNATSEYRIEVVK  171 (198)
T ss_dssp             CSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH-HHTTTTHHHHHHHHHH
T ss_pred             CCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc-cccccchHHHHHHHHH
Confidence            9999999998874 34 57778899999999999875332 4677889999999999987532 22          1367


Q ss_pred             CCCCccEEEccCCcccCCC
Q 030257          146 NQSSLQTLYLSYNQLSGPI  164 (180)
Q Consensus       146 ~~~~L~~l~l~~n~~~~~~  164 (180)
                      .+++|+.||  +++++...
T Consensus       172 ~l~~L~~Ld--~~~i~~~e  188 (198)
T 1ds9_A          172 RLPNLKKLD--GMPVDVDE  188 (198)
T ss_dssp             HCSSCSEEC--CGGGTTTT
T ss_pred             hCCCcEEEC--CcccCHHH
Confidence            788899887  67766433

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.60  E-value=1.3e-14  Score=112.34  Aligned_cols=65  Identities=34%  Similarity=0.290  Sum_probs=35.8

Q ss_pred             CcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCCChhhh
Q 030257           99 AELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFIL  169 (180)
Q Consensus        99 ~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~  169 (180)
                      ++|+.|++++|.++. ++.   .+++|+.|++++|.++  .+|..+..+++|+.|++++|++++.+|..+.
T Consensus       241 ~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~--~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~  305 (622)
T 3g06_A          241 SELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT--RLPESLIHLSSETTVNLEGNPLSERTLQALR  305 (622)
T ss_dssp             TTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC--SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred             CcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC--cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence            445555555555542 222   3455666666666665  2455566666666666666666655555443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.58  E-value=1.1e-13  Score=107.03  Aligned_cols=64  Identities=33%  Similarity=0.372  Sum_probs=39.9

Q ss_pred             CcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCCChhhhhhc
Q 030257           99 AELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKF  172 (180)
Q Consensus        99 ~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~  172 (180)
                      ++|+.|++++|.+++ ++   ..+++|+.|++++|.++.  ++.   .+++|+.|++++|.++ .+|..+..+.
T Consensus       221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~--lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~  284 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS--LPM---LPSGLLSLSVYRNQLT-RLPESLIHLS  284 (622)
T ss_dssp             TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCC-SCCGGGGGSC
T ss_pred             CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc--CCc---ccccCcEEeCCCCCCC-cCCHHHhhcc
Confidence            345555555555543 22   234567777777777662  343   4577888888888888 6677665543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.57  E-value=1e-13  Score=103.88  Aligned_cols=77  Identities=31%  Similarity=0.402  Sum_probs=36.1

Q ss_pred             CccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEEec
Q 030257           28 NLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQ  107 (180)
Q Consensus        28 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~  107 (180)
                      +|++|++++|.+.+ .| .+..+++|++|++++|.+.. .|..   ..+|+++++++|.+.. .| .+..+++|+.++++
T Consensus       132 ~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~  203 (454)
T 1jl5_A          132 LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYAD  203 (454)
T ss_dssp             TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred             CCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECC
Confidence            45555555555542 33 35555555555555555442 2211   1345555555554442 22 34444555555555


Q ss_pred             CCcCC
Q 030257          108 NNFLT  112 (180)
Q Consensus       108 ~~~~~  112 (180)
                      +|.+.
T Consensus       204 ~N~l~  208 (454)
T 1jl5_A          204 NNSLK  208 (454)
T ss_dssp             SSCCS
T ss_pred             CCcCC
Confidence            55444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.57  E-value=9.4e-14  Score=104.05  Aligned_cols=140  Identities=28%  Similarity=0.388  Sum_probs=91.7

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   81 (180)
                      ++|++|++++|.+. .+| + +.++++|++|++++|.+.+ .|..   ..+|++|++++|.+.. .| .+..+++|++++
T Consensus       131 ~~L~~L~L~~n~l~-~lp-~-~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~  201 (454)
T 1jl5_A          131 PLLEYLGVSNNQLE-KLP-E-LQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIY  201 (454)
T ss_dssp             TTCCEEECCSSCCS-SCC-C-CTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred             CCCCEEECcCCCCC-CCc-c-cCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEE
Confidence            47888888888887 466 3 4558899999999988773 4443   2478888888888774 34 477778888888


Q ss_pred             eeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCccc
Q 030257           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS  161 (180)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  161 (180)
                      +.+|.+.. .|..   .++|+.+++++|.+. .++ .+..+++|++|++++|.+++  ++..   .++|+.|++++|.+.
T Consensus       202 l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~--l~~~---~~~L~~L~l~~N~l~  270 (454)
T 1jl5_A          202 ADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT--LPDL---PPSLEALNVRDNYLT  270 (454)
T ss_dssp             CCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS--CCSC---CTTCCEEECCSSCCS
T ss_pred             CCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc--cccc---ccccCEEECCCCccc
Confidence            88777663 2322   246777777777666 344 35666777777777776653  2221   244555555555544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.56  E-value=3e-14  Score=109.31  Aligned_cols=123  Identities=20%  Similarity=0.243  Sum_probs=104.3

Q ss_pred             CccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEEec
Q 030257           28 NLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQ  107 (180)
Q Consensus        28 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~  107 (180)
                      .|+.|++++|.+.+ +|. +..+++|+.|++++|.+. ..|..+..+++|++|++++|.++. .| .+..+++|+.|+++
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence            58899999999984 665 899999999999999998 678899999999999999999985 56 78899999999999


Q ss_pred             CCcCCCCc-cccccCCCCCCeEEcccCcCCCCC--CcccccCCCCccEEEc
Q 030257          108 NNFLTRAI-PSSIFNLSSLSNLDLSVNNLTGGI--IPSLLGNQSSLQTLYL  155 (180)
Q Consensus       108 ~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~l~l  155 (180)
                      +|.+++.. |..+..+++|+.|++++|.+++..  ....+..+++|+.|++
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            99998776 889999999999999999987431  1123445788888864

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.56  E-value=2.5e-14  Score=93.59  Aligned_cols=104  Identities=21%  Similarity=0.338  Sum_probs=54.2

Q ss_pred             eEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeC
Q 030257            5 LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG   84 (180)
Q Consensus         5 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~   84 (180)
                      +.++++++.+. .+|..+   .+++++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|++++
T Consensus        12 ~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           12 TTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            34555555554 344433   24555555555555544455555555555555555555544444445555555555555


Q ss_pred             CcCCCCcchhhcCCCcccEEEecCCcCC
Q 030257           85 NQLQGEIPEELGNLAELEMLWLQNNFLT  112 (180)
Q Consensus        85 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~  112 (180)
                      |.+....+..+..+++|+.+++++|++.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            5555333334555555555555555553

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.55  E-value=1.7e-15  Score=116.64  Aligned_cols=169  Identities=12%  Similarity=0.048  Sum_probs=106.7

Q ss_pred             CCCceEEEeeC-----------CeecccCchhhhhcCCCccEEEcccccCCCCCCccccC-CCCccEEEec----ccccc
Q 030257            1 MSSLLSIRFTN-----------NTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSN-CKRLRNISLS----LDDFS   64 (180)
Q Consensus         1 l~~L~~L~l~~-----------~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-l~~L~~L~l~----~~~~~   64 (180)
                      +++|++|++.+           +.+++.....+..++++|++|++..+.+.+.....+.. +++|+.|++.    .+.++
T Consensus       341 ~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~  420 (592)
T 3ogk_B          341 CKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERIT  420 (592)
T ss_dssp             CTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCS
T ss_pred             CCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCcccc
Confidence            35677777763           23332223333445777777777666665444444443 6777777775    33443


Q ss_pred             cc-----cchhhhccCCccEEEeeCCc--CCCCcchhh-cCCCcccEEEecCCcCCCC-ccccccCCCCCCeEEcccCcC
Q 030257           65 GT-----IPKEIGNVTKLIRLYLRGNQ--LQGEIPEEL-GNLAELEMLWLQNNFLTRA-IPSSIFNLSSLSNLDLSVNNL  135 (180)
Q Consensus        65 ~~-----~~~~~~~l~~L~~l~l~~~~--~~~~~~~~~-~~~~~L~~l~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~  135 (180)
                      ..     .+..+..+++|++|+++.+.  +....+..+ ..+++|+.|++++|.+++. .+..+..+++|++|++++|.+
T Consensus       421 ~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l  500 (592)
T 3ogk_B          421 DLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF  500 (592)
T ss_dssp             SCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCC
T ss_pred             CchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCC
Confidence            21     22335567888888886433  333333333 3478899999998888653 334556788999999999987


Q ss_pred             CCCCCcccccCCCCccEEEccCCcccCCCChhhh
Q 030257          136 TGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFIL  169 (180)
Q Consensus       136 ~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~  169 (180)
                      ++...+..+..+++|+.|++++|.+++.-.+.++
T Consensus       501 ~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~  534 (592)
T 3ogk_B          501 SERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQ  534 (592)
T ss_dssp             BHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGG
T ss_pred             cHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHH
Confidence            6544555566788999999999998766444443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.55  E-value=8.3e-14  Score=91.07  Aligned_cols=105  Identities=22%  Similarity=0.197  Sum_probs=79.1

Q ss_pred             ccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEEecC
Q 030257           29 LESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQN  108 (180)
Q Consensus        29 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~  108 (180)
                      .++++++++.+. .+|..+  .+++++|++++|.+....+..+..+++|++|++++|.++...+..+..+++|+.|++++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            467788888776 455544  36788888888888776677788888888888888887755555667788888888888


Q ss_pred             CcCCCCccccccCCCCCCeEEcccCcCC
Q 030257          109 NFLTRAIPSSIFNLSSLSNLDLSVNNLT  136 (180)
Q Consensus       109 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~  136 (180)
                      |.+.+..+..+..+++|++|++++|.+.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            8887655566777888888888888765

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.54  E-value=5.9e-14  Score=92.12  Aligned_cols=86  Identities=22%  Similarity=0.269  Sum_probs=40.4

Q ss_pred             CCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEc
Q 030257           51 KRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDL  130 (180)
Q Consensus        51 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l  130 (180)
                      ++++.|++++|.+....+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+++|++|++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  112 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL  112 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence            44444455544444444444444555555555555444322223344455555555555554333333444555555555


Q ss_pred             ccCcCC
Q 030257          131 SVNNLT  136 (180)
Q Consensus       131 ~~~~~~  136 (180)
                      ++|.+.
T Consensus       113 ~~N~~~  118 (174)
T 2r9u_A          113 YNNPWD  118 (174)
T ss_dssp             CSSCBC
T ss_pred             CCCCcc
Confidence            555443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.52  E-value=2.4e-16  Score=115.18  Aligned_cols=169  Identities=18%  Similarity=0.160  Sum_probs=121.4

Q ss_pred             CCceEEEeeCCeecccCchhhhh----cCCCccEEEcccccCCCCCCccc-cCCCCccEEEecccccccccchhhh----
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCN----HLSNLESLFLKNNMFHGKIPSTL-SNCKRLRNISLSLDDFSGTIPKEIG----   72 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~----~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~----   72 (180)
                      +.|+.|++++|.+.......+..    +..+|++|++++|.+.+.....+ ..+++|+.|++++|.+.......+.    
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            57899999999986432222222    23689999999998864333333 2467899999999998754444442    


Q ss_pred             -ccCCccEEEeeCCcCCCC----cchhhcCCCcccEEEecCCcCCCCc----cccccCCCCCCeEEcccCcCCCCC---C
Q 030257           73 -NVTKLIRLYLRGNQLQGE----IPEELGNLAELEMLWLQNNFLTRAI----PSSIFNLSSLSNLDLSVNNLTGGI---I  140 (180)
Q Consensus        73 -~l~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~---~  140 (180)
                       ..++|++|++++|.+...    ....+..+++|+.|++++|.+.+..    ...+...++|++|++++|.+++..   +
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l  231 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL  231 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence             467899999999987643    3344567889999999999986532    445667789999999999997531   2


Q ss_pred             cccccCCCCccEEEccCCcccCCCChhhhh
Q 030257          141 PSLLGNQSSLQTLYLSYNQLSGPIPSFILC  170 (180)
Q Consensus       141 ~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~  170 (180)
                      ...+...++|+.|++++|.+.+.....+..
T Consensus       232 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~  261 (372)
T 3un9_A          232 ARAAREHPSLELLHLYFNELSSEGRQVLRD  261 (372)
T ss_dssp             HHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred             HHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence            334556789999999999988655555443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.52  E-value=1.9e-13  Score=89.64  Aligned_cols=105  Identities=20%  Similarity=0.283  Sum_probs=78.9

Q ss_pred             eEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeC
Q 030257            5 LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG   84 (180)
Q Consensus         5 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~   84 (180)
                      +.++++++.+. .+|..+.   ++|++|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|++|++++
T Consensus        15 ~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            46777777775 6776553   6778888888888766677778888888888888888765555667788888888888


Q ss_pred             CcCCCCcchhhcCCCcccEEEecCCcCCC
Q 030257           85 NQLQGEIPEELGNLAELEMLWLQNNFLTR  113 (180)
Q Consensus        85 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~  113 (180)
                      |.+....+..+..+++|+.+++++|++..
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCccc
Confidence            88775444457778888888888887764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.50  E-value=1.7e-14  Score=111.07  Aligned_cols=84  Identities=11%  Similarity=0.229  Sum_probs=35.6

Q ss_pred             ceEEEeeCCee-cccCchhhhhcCCCccEEEcccccCCCC----CCccccCCCCccEEEecccccc----cccchhhhcc
Q 030257            4 LLSIRFTNNTL-FGELPPNFCNHLSNLESLFLKNNMFHGK----IPSTLSNCKRLRNISLSLDDFS----GTIPKEIGNV   74 (180)
Q Consensus         4 L~~L~l~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~----~~~~~~~~~l   74 (180)
                      |++|++.+|.. .......+..++++|++|++++|.+.+.    .+..+..+++|+.|+++++.+.    ...+..+..+
T Consensus       140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~  219 (592)
T 3ogk_B          140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC  219 (592)
T ss_dssp             CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred             CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence            55555555541 1111122223455555555555554322    1112233455555555554443    1122223344


Q ss_pred             CCccEEEeeCCcC
Q 030257           75 TKLIRLYLRGNQL   87 (180)
Q Consensus        75 ~~L~~l~l~~~~~   87 (180)
                      ++|++|++.++.+
T Consensus       220 ~~L~~L~L~~~~~  232 (592)
T 3ogk_B          220 RSLVSVKVGDFEI  232 (592)
T ss_dssp             TTCCEEECSSCBG
T ss_pred             CCCcEEeccCccH
Confidence            5555555554443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.49  E-value=1.8e-16  Score=106.26  Aligned_cols=137  Identities=25%  Similarity=0.283  Sum_probs=111.1

Q ss_pred             cCCCccEEEcccccCCCCCCc------cccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCC
Q 030257           25 HLSNLESLFLKNNMFHGKIPS------TLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNL   98 (180)
Q Consensus        25 ~l~~L~~L~l~~~~~~~~~~~------~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~   98 (180)
                      ....++.+++.++.+.+..+.      .+..+++|++|++++|.+.. .+ .+..+++|++|++++|.+. ..|..+..+
T Consensus        16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~   92 (198)
T 1ds9_A           16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVA   92 (198)
T ss_dssp             HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHH
T ss_pred             hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcC
Confidence            366777777777776655554      78899999999999999885 45 7889999999999999988 466667777


Q ss_pred             CcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCCCh
Q 030257           99 AELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPS  166 (180)
Q Consensus        99 ~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  166 (180)
                      ++|+.+++++|.+.+ .+ .+..+++|++|++++|.+++......+..+++|+.+++++|++.+.+|.
T Consensus        93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A           93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence            899999999999986 34 5778899999999999998421113678899999999999999766543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.48  E-value=2.1e-13  Score=98.16  Aligned_cols=102  Identities=17%  Similarity=0.154  Sum_probs=87.1

Q ss_pred             CCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCccc-EEEecCCcCCCCccccccCCCCCCeE
Q 030257           50 CKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELE-MLWLQNNFLTRAIPSSIFNLSSLSNL  128 (180)
Q Consensus        50 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~-~l~l~~~~~~~~~~~~l~~~~~L~~L  128 (180)
                      +++|+.+++++|.+.......|.++.+|+.+++..+ +......+|.+|++|+ .+++.. .+....+.+|.++++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            678999999999888777788999999999999998 6656677899999999 999988 6665556889999999999


Q ss_pred             EcccCcCCCCCCcccccCCCCccEEE
Q 030257          129 DLSVNNLTGGIIPSLLGNQSSLQTLY  154 (180)
Q Consensus       129 ~l~~~~~~~~~~~~~~~~~~~L~~l~  154 (180)
                      ++.++.++. ....++.++++|+.+.
T Consensus       303 ~l~~n~i~~-I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          303 LATGDKITT-LGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EECSSCCCE-ECTTTTCTTCCCCEEE
T ss_pred             EeCCCccCc-cchhhhcCCcchhhhc
Confidence            999998874 3456788999999886

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.43  E-value=7.2e-14  Score=107.65  Aligned_cols=38  Identities=26%  Similarity=0.232  Sum_probs=21.1

Q ss_pred             CCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCC
Q 030257          121 NLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYN  158 (180)
Q Consensus       121 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n  158 (180)
                      .+++|++|++++|.+++..+...+..+++|+.|++++|
T Consensus       287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~  324 (594)
T 2p1m_B          287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY  324 (594)
T ss_dssp             HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred             hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence            34566666666666543323333445566666666655

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.40  E-value=1.9e-14  Score=110.91  Aligned_cols=89  Identities=19%  Similarity=0.203  Sum_probs=48.9

Q ss_pred             hccCCccEEEeeCCcCCCCcchhhcC-CCcccEEEecCCcCCCCccccc-cCCCCCCeEEcccCcCCCCCCcccccCCCC
Q 030257           72 GNVTKLIRLYLRGNQLQGEIPEELGN-LAELEMLWLQNNFLTRAIPSSI-FNLSSLSNLDLSVNNLTGGIIPSLLGNQSS  149 (180)
Q Consensus        72 ~~l~~L~~l~l~~~~~~~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  149 (180)
                      ..+++|++|++++ .+....+..+.. +++|+.|++++|.+++.....+ ..+++|++|++++|.+++......+..+++
T Consensus       429 ~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~  507 (594)
T 2p1m_B          429 EHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET  507 (594)
T ss_dssp             HHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGG
T ss_pred             hhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCC
Confidence            3445555555544 233222222322 5667777777666654333322 456777777777777654323334445667


Q ss_pred             ccEEEccCCccc
Q 030257          150 LQTLYLSYNQLS  161 (180)
Q Consensus       150 L~~l~l~~n~~~  161 (180)
                      |+.|++++|+++
T Consensus       508 L~~L~l~~~~~~  519 (594)
T 2p1m_B          508 MRSLWMSSCSVS  519 (594)
T ss_dssp             SSEEEEESSCCB
T ss_pred             CCEEeeeCCCCC
Confidence            777777777664

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.35  E-value=9.6e-14  Score=101.45  Aligned_cols=160  Identities=16%  Similarity=0.091  Sum_probs=112.1

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccc-----cCCCCccEEEecccccccc----cchhhh
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTL-----SNCKRLRNISLSLDDFSGT----IPKEIG   72 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~~----~~~~~~   72 (180)
                      ++|++|++++|.+.+.....+...+++|++|++++|.+.+.....+     ...++|++|++++|.+...    .+..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            5899999999998754455555667899999999998874433333     3468899999999998643    334456


Q ss_pred             ccCCccEEEeeCCcCCCCc----chhhcCCCcccEEEecCCcCCCCc----cccccCCCCCCeEEcccCcCCCCCCcccc
Q 030257           73 NVTKLIRLYLRGNQLQGEI----PEELGNLAELEMLWLQNNFLTRAI----PSSIFNLSSLSNLDLSVNNLTGGIIPSLL  144 (180)
Q Consensus        73 ~l~~L~~l~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  144 (180)
                      .+++|++|++++|.+....    ...+...++|+.|++++|.+++..    ...+...++|++|++++|.+++... ..+
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~-~~L  259 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGR-QVL  259 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHH-HHH
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHH-HHH
Confidence            7899999999999876432    455677789999999999997533    3345567899999999999975322 222


Q ss_pred             c---CCC--CccEEE--ccCCcccC
Q 030257          145 G---NQS--SLQTLY--LSYNQLSG  162 (180)
Q Consensus       145 ~---~~~--~L~~l~--l~~n~~~~  162 (180)
                      .   ...  .++.+.  +..+.+..
T Consensus       260 ~~~~~~~~~~L~~l~~ll~~~~~~~  284 (372)
T 3un9_A          260 RDLGGAAEGGARVVVSLTEGTAVSE  284 (372)
T ss_dssp             HHCC------CEEECCCC----CHH
T ss_pred             HHHhcCCCccchhhHhhhcCCccCH
Confidence            1   112  266776  66666543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.33  E-value=9.9e-12  Score=89.91  Aligned_cols=104  Identities=24%  Similarity=0.249  Sum_probs=77.9

Q ss_pred             EEEeeCC-eecccCchhhhhcCCCccEEEccc-ccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEee
Q 030257            6 SIRFTNN-TLFGELPPNFCNHLSNLESLFLKN-NMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR   83 (180)
Q Consensus         6 ~L~l~~~-~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~   83 (180)
                      .++++++ .+. .+|.  +..+.+|++|++++ |.+....+..|..+++|+.|++++|.+....+..|..+++|++|+++
T Consensus        12 ~v~~~~~n~l~-~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             CEECCSSCCCT-TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             EEEcCCCCCCC-ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            4566666 565 5777  44578888888886 88876666778888888888888888887777778888888888888


Q ss_pred             CCcCCCCcchhhcCCCcccEEEecCCcCCC
Q 030257           84 GNQLQGEIPEELGNLAELEMLWLQNNFLTR  113 (180)
Q Consensus        84 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~  113 (180)
                      +|.+....+..+..++ |+.|++.+|.+..
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            8888754444555554 8888888888753

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.33  E-value=1.6e-11  Score=90.55  Aligned_cols=164  Identities=11%  Similarity=0.105  Sum_probs=88.1

Q ss_pred             CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEeccc-------------------
Q 030257            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLD-------------------   61 (180)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-------------------   61 (180)
                      |++|+.+.+.++.+. .++...|. ..+|+.+.+..+ +......+|.++++|+.+++..+                   
T Consensus       179 c~~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~l  255 (401)
T 4fdw_A          179 CYNLKKADLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVKL  255 (401)
T ss_dssp             CTTCCEEECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEE
T ss_pred             cccCCeeecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCccccccccCCccEEEe
Confidence            345666666555444 34444444 344555555432 33333445555666666665442                   


Q ss_pred             --ccccccchhhhccCCccEEEeeCCcCC-----CCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCc
Q 030257           62 --DFSGTIPKEIGNVTKLIRLYLRGNQLQ-----GEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNN  134 (180)
Q Consensus        62 --~~~~~~~~~~~~l~~L~~l~l~~~~~~-----~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  134 (180)
                        .+.......|.++.+|+.+.+.++.+.     ......|..|++|+.+++.. .+......+|.++.+|+.+.+..+ 
T Consensus       256 p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-  333 (401)
T 4fdw_A          256 PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-  333 (401)
T ss_dssp             ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-
T ss_pred             CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-
Confidence              122233445556666666666655432     12344566666666666653 344333456666777777777554 


Q ss_pred             CCCCCCcccccCCCCccEEEccCCcccCCCChhhhhh
Q 030257          135 LTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCK  171 (180)
Q Consensus       135 ~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~  171 (180)
                      ++. ....++..+ +|+.+++.+|.........+..+
T Consensus       334 l~~-I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~  368 (401)
T 4fdw_A          334 VTQ-INFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGF  368 (401)
T ss_dssp             CCE-ECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCS
T ss_pred             ccE-EcHHhCCCC-CCCEEEEcCCCCcccccccccCC
Confidence            331 234556777 88888888887665444444444

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.31  E-value=8.7e-12  Score=90.22  Aligned_cols=103  Identities=19%  Similarity=0.187  Sum_probs=79.3

Q ss_pred             EEEcccc-cCCCCCCccccCCCCccEEEecc-cccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEEecC
Q 030257           31 SLFLKNN-MFHGKIPSTLSNCKRLRNISLSL-DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQN  108 (180)
Q Consensus        31 ~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~  108 (180)
                      .++.+++ .+. .+|. +..+.+|+.|++++ |.+....+..|..+++|++|++++|.++...+..+..+++|+.|++++
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            4566666 666 5666 78888888888885 888766667788888888888888888766666788888888888888


Q ss_pred             CcCCCCccccccCCCCCCeEEcccCcCC
Q 030257          109 NFLTRAIPSSIFNLSSLSNLDLSVNNLT  136 (180)
Q Consensus       109 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~  136 (180)
                      |.+.+..+..+..++ |+.|++.+|.+.
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            888765555555554 888888888775

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.16  E-value=3.2e-11  Score=87.68  Aligned_cols=166  Identities=13%  Similarity=0.134  Sum_probs=107.9

Q ss_pred             CCCceEEEeeCCeecc--------cCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhh
Q 030257            1 MSSLLSIRFTNNTLFG--------ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIG   72 (180)
Q Consensus         1 l~~L~~L~l~~~~~~~--------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~   72 (180)
                      +++|+.|.+.+.....        .-...+...+|+|+.|.+.++.-. ..+. + .+++|+.|++..|.+.......+.
T Consensus       138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~  214 (362)
T 2ra8_A          138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDIL  214 (362)
T ss_dssp             HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHH
T ss_pred             cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHH
Confidence            3688999886543210        012345566899999999887322 2222 3 378999999998887644434444


Q ss_pred             --ccCCccEEEeeCC--cCC-CC----cchhh--cCCCcccEEEecCCcCCCCccccc---cCCCCCCeEEcccCcCCCC
Q 030257           73 --NVTKLIRLYLRGN--QLQ-GE----IPEEL--GNLAELEMLWLQNNFLTRAIPSSI---FNLSSLSNLDLSVNNLTGG  138 (180)
Q Consensus        73 --~l~~L~~l~l~~~--~~~-~~----~~~~~--~~~~~L~~l~l~~~~~~~~~~~~l---~~~~~L~~L~l~~~~~~~~  138 (180)
                        .+++|++|+++.+  ... ..    ....+  ..+++|+.|++.+|.+.+..+..+   ..+++|++|+++.|.+.+.
T Consensus       215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~  294 (362)
T 2ra8_A          215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE  294 (362)
T ss_dssp             HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH
T ss_pred             HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH
Confidence              6899999998632  111 00    11122  247899999999998864333222   3578999999999988753


Q ss_pred             C---CcccccCCCCccEEEccCCcccCCCChhhh
Q 030257          139 I---IPSLLGNQSSLQTLYLSYNQLSGPIPSFIL  169 (180)
Q Consensus       139 ~---~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~  169 (180)
                      .   +...+..+++|+.|+++.|.+++.....+.
T Consensus       295 G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~  328 (362)
T 2ra8_A          295 GARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQ  328 (362)
T ss_dssp             HHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHH
T ss_pred             HHHHHHhhcccCCcceEEECCCCcCCHHHHHHHH
Confidence            1   222335578999999999988755444443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.08  E-value=1e-09  Score=80.91  Aligned_cols=66  Identities=12%  Similarity=0.099  Sum_probs=34.3

Q ss_pred             cCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeC
Q 030257           17 ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG   84 (180)
Q Consensus        17 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~   84 (180)
                      .++...|.++.+|+.+++.++.+......+|. +.+|+.+.+..+ +.......|.++.+|+.+.+..
T Consensus       170 ~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~  235 (401)
T 4fdw_A          170 QLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE  235 (401)
T ss_dssp             EECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred             EehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence            34444455555566666655555533333333 455666555533 3334445566666666666654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.88  E-value=5.1e-10  Score=73.98  Aligned_cols=115  Identities=17%  Similarity=0.252  Sum_probs=67.8

Q ss_pred             ccCCCCccEEEeccc-ccccc----cchhhhccCCccEEEeeCCcCCCCc----chhhcCCCcccEEEecCCcCCCC---
Q 030257           47 LSNCKRLRNISLSLD-DFSGT----IPKEIGNVTKLIRLYLRGNQLQGEI----PEELGNLAELEMLWLQNNFLTRA---  114 (180)
Q Consensus        47 ~~~l~~L~~L~l~~~-~~~~~----~~~~~~~l~~L~~l~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~---  114 (180)
                      +...+.|++|++++| .+...    ....+...++|++|++++|.+....    ...+...++|+.|++++|.+.+.   
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            344555666666665 55421    2233444566677777666654322    22334446677777777777543   


Q ss_pred             -ccccccCCCCCCeEEc--ccCcCCCCC---CcccccCCCCccEEEccCCccc
Q 030257          115 -IPSSIFNLSSLSNLDL--SVNNLTGGI---IPSLLGNQSSLQTLYLSYNQLS  161 (180)
Q Consensus       115 -~~~~l~~~~~L~~L~l--~~~~~~~~~---~~~~~~~~~~L~~l~l~~n~~~  161 (180)
                       +...+...++|++|++  ++|.+.+..   +...+...+.|+.|++++|.+.
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence             2344556667888888  677776431   2334556678888888888765

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.85  E-value=1.2e-09  Score=72.26  Aligned_cols=115  Identities=16%  Similarity=0.151  Sum_probs=87.8

Q ss_pred             hhhcCCCccEEEcccc-cCCCC----CCccccCCCCccEEEecccccccc----cchhhhccCCccEEEeeCCcCCCC--
Q 030257           22 FCNHLSNLESLFLKNN-MFHGK----IPSTLSNCKRLRNISLSLDDFSGT----IPKEIGNVTKLIRLYLRGNQLQGE--   90 (180)
Q Consensus        22 ~~~~l~~L~~L~l~~~-~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~l~l~~~~~~~~--   90 (180)
                      +....+.|++|++++| .+.+.    +...+...++|++|++++|.+...    ....+...++|++|++++|.+...  
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            4455789999999999 87632    344566788999999999998743    334455678999999999998754  


Q ss_pred             --cchhhcCCCcccEEEe--cCCcCCCCc----cccccCCCCCCeEEcccCcCC
Q 030257           91 --IPEELGNLAELEMLWL--QNNFLTRAI----PSSIFNLSSLSNLDLSVNNLT  136 (180)
Q Consensus        91 --~~~~~~~~~~L~~l~l--~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~  136 (180)
                        ....+...++|+.|++  ++|.+.+..    ...+...++|++|++++|.+.
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence              2445667788999999  889987543    344556689999999999875

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.81  E-value=2.2e-09  Score=78.02  Aligned_cols=152  Identities=16%  Similarity=0.165  Sum_probs=99.9

Q ss_pred             CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCcccc--CCCCccEEEeccc--cc-cc----ccchhh
Q 030257            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLS--NCKRLRNISLSLD--DF-SG----TIPKEI   71 (180)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~--~~-~~----~~~~~~   71 (180)
                      +|+|+.|.+.++.-. .++.  .. +++|++|.+..+.+.......+.  .+++|+.|+++.+  .. ..    .....+
T Consensus       171 ~P~L~~L~L~g~~~l-~l~~--~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l  246 (362)
T 2ra8_A          171 MPLLNNLKIKGTNNL-SIGK--KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF  246 (362)
T ss_dssp             CTTCCEEEEECCBTC-BCCS--CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred             CCCCcEEEEeCCCCc-eecc--cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence            478999999987422 3343  23 88999999998877643333333  6899999998632  11 10    011122


Q ss_pred             --hccCCccEEEeeCCcCCCCcchhh---cCCCcccEEEecCCcCCCCc----cccccCCCCCCeEEcccCcCCCCCCcc
Q 030257           72 --GNVTKLIRLYLRGNQLQGEIPEEL---GNLAELEMLWLQNNFLTRAI----PSSIFNLSSLSNLDLSVNNLTGGIIPS  142 (180)
Q Consensus        72 --~~l~~L~~l~l~~~~~~~~~~~~~---~~~~~L~~l~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~  142 (180)
                        ..+++|++|++.+|.+....+..+   ..+++|+.|+++.|.+.+..    ...+..+++|+.|+++.|.+++. ...
T Consensus       247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~-~~~  325 (362)
T 2ra8_A          247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE-MKK  325 (362)
T ss_dssp             CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH-HHH
T ss_pred             hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH-HHH
Confidence              247899999999988753333222   35789999999999887643    23345679999999999988753 222


Q ss_pred             cccC-CCCccEEEccCCc
Q 030257          143 LLGN-QSSLQTLYLSYNQ  159 (180)
Q Consensus       143 ~~~~-~~~L~~l~l~~n~  159 (180)
                      .+.. +  ...++++.++
T Consensus       326 ~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          326 ELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHC--CSEEECCSBC
T ss_pred             HHHHHc--CCEEEecCCc
Confidence            2322 2  2557887776

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.75  E-value=2.4e-09  Score=69.66  Aligned_cols=83  Identities=16%  Similarity=0.127  Sum_probs=41.6

Q ss_pred             CccEEEeeCCcCCCCcchhhcCCCcccEEEecCCc-CCCCccccccCC----CCCCeEEcccCc-CCCCCCcccccCCCC
Q 030257           76 KLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNF-LTRAIPSSIFNL----SSLSNLDLSVNN-LTGGIIPSLLGNQSS  149 (180)
Q Consensus        76 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~l~~~----~~L~~L~l~~~~-~~~~~~~~~~~~~~~  149 (180)
                      .|++++++++.++......+..+++|+.|++++|. +++.....+..+    ++|++|++++|. +++..+ ..+.++++
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~~~  140 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFRN  140 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGCTT
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcCCC
Confidence            45555555555544444444555556666665553 333322233332    246666666653 554322 23445566


Q ss_pred             ccEEEccCCc
Q 030257          150 LQTLYLSYNQ  159 (180)
Q Consensus       150 L~~l~l~~n~  159 (180)
                      |+.|++++|+
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            6666666654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.75  E-value=1.3e-08  Score=66.24  Aligned_cols=87  Identities=11%  Similarity=0.037  Sum_probs=59.2

Q ss_pred             CCccEEEecccccccccchhhhccCCccEEEeeCCc-CCCCcchhhcCC----CcccEEEecCCc-CCCCccccccCCCC
Q 030257           51 KRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQ-LQGEIPEELGNL----AELEMLWLQNNF-LTRAIPSSIFNLSS  124 (180)
Q Consensus        51 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~-~~~~~~~~~~~~----~~L~~l~l~~~~-~~~~~~~~l~~~~~  124 (180)
                      .+|+.|++++|.++......+..+++|++|++++|. ++......+..+    ++|+.|++++|. +++.....+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            467778888877765555566777888888888774 554444445443    368888888774 66655555667788


Q ss_pred             CCeEEcccCc-CCC
Q 030257          125 LSNLDLSVNN-LTG  137 (180)
Q Consensus       125 L~~L~l~~~~-~~~  137 (180)
                      |++|++++|. +++
T Consensus       141 L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          141 LKYLFLSDLPGVKE  154 (176)
T ss_dssp             CCEEEEESCTTCCC
T ss_pred             CCEEECCCCCCCCc
Confidence            8888888874 554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.46  E-value=1.5e-06  Score=63.92  Aligned_cols=147  Identities=18%  Similarity=0.148  Sum_probs=106.2

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   81 (180)
                      .+|+.+.+.... . .+....+.++..++.+.+..+... .....|..+..++.+......+   ....+..+.+|+.+.
T Consensus       230 ~~l~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~  303 (394)
T 4fs7_A          230 TGVKNIIIPDSF-T-ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVK  303 (394)
T ss_dssp             CCCCEEEECTTC-C-EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEE
T ss_pred             CCCceEEECCCc-e-ecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccc
Confidence            356666665433 2 455666677899999999876443 5566788888898888766543   334677889999999


Q ss_pred             eeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCC
Q 030257           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYN  158 (180)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n  158 (180)
                      +..+ +......++.+|.+|+.+++..+ +......+|.++.+|+.+.+..+ ++. ....++..|.+|+.+++..+
T Consensus       304 l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~-I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          304 LLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRK-IGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             ECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCE-ECTTTBTTCTTCCEEEEEGG
T ss_pred             cccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccE-ehHHHhhCCCCCCEEEECCC
Confidence            8765 44455678889999999999654 54344567888999999999776 432 24567888999999998765

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.41  E-value=2.7e-06  Score=62.55  Aligned_cols=109  Identities=13%  Similarity=0.165  Sum_probs=45.7

Q ss_pred             ccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCC
Q 030257           45 STLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSS  124 (180)
Q Consensus        45 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~  124 (180)
                      .+|..+.+|+.+.+.+.... .....+.++..|+.+.+... +......+|.+|.+|+.+.+..+ ++.....+|.++.+
T Consensus       259 ~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~  335 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSSR-ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ  335 (394)
T ss_dssp             TTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred             ceeeecccccEEecccccce-ecCcccccccccccccCCCc-ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence            34444555555554433221 23334444555555544322 22222334445555555555432 22122234444555


Q ss_pred             CCeEEcccCcCCCCCCcccccCCCCccEEEccCC
Q 030257          125 LSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYN  158 (180)
Q Consensus       125 L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n  158 (180)
                      |+.+.+..+ ++. .-..++.+|.+|+.+++.++
T Consensus       336 L~~i~ip~s-v~~-I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          336 LERIAIPSS-VTK-IPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             CCEEEECTT-CCB-CCGGGGTTCTTCCEEEESSC
T ss_pred             CCEEEECcc-cCE-EhHhHhhCCCCCCEEEECCc
Confidence            555555432 221 12234445555555555443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.39  E-value=4.9e-07  Score=62.90  Aligned_cols=81  Identities=25%  Similarity=0.244  Sum_probs=58.8

Q ss_pred             hccCCccEEEeeCCcCCCC--cchhhcCCCcccEEEecCCcCCCC-ccccccCCCCCCeEEcccCcCCCCCCc-------
Q 030257           72 GNVTKLIRLYLRGNQLQGE--IPEELGNLAELEMLWLQNNFLTRA-IPSSIFNLSSLSNLDLSVNNLTGGIIP-------  141 (180)
Q Consensus        72 ~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~L~~l~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~-------  141 (180)
                      ..+++|+.|++++|.+...  .+..+..+++|+.|++++|.+.+. ..+.+..+ +|++|++++|.+.+. ++       
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~-~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDT-FRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGG-CSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccc-cCcchhHHH
Confidence            4678999999999998753  334566788999999999998764 12333444 899999999988742 22       


Q ss_pred             ccccCCCCccEEE
Q 030257          142 SLLGNQSSLQTLY  154 (180)
Q Consensus       142 ~~~~~~~~L~~l~  154 (180)
                      ..+..+++|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence            2456778888886

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.37  E-value=7.4e-07  Score=61.99  Aligned_cols=69  Identities=30%  Similarity=0.304  Sum_probs=54.6

Q ss_pred             cCCCcccEEEecCCcCCC--CccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCCC
Q 030257           96 GNLAELEMLWLQNNFLTR--AIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIP  165 (180)
Q Consensus        96 ~~~~~L~~l~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  165 (180)
                      ..+++|+.|++++|.+.+  .++..+..+++|+.|++++|.+++......+..+ +|+.|++++|++++.+|
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCS
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccC
Confidence            457899999999999987  3446667899999999999999854222233334 99999999999987666

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.34  E-value=7e-06  Score=60.33  Aligned_cols=125  Identities=13%  Similarity=0.137  Sum_probs=83.2

Q ss_pred             CCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEE
Q 030257           26 LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLW  105 (180)
Q Consensus        26 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~  105 (180)
                      ...|+.+.+.... ......+|..+..++.+.+..+... .....+..+..++.+......+.   ...+..+.+|+.+.
T Consensus       229 ~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~  303 (394)
T 4fs7_A          229 KTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVK  303 (394)
T ss_dssp             TCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEE
T ss_pred             cCCCceEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccc
Confidence            5677777776542 2244456777888888888776443 45566777888888776654332   24567788888888


Q ss_pred             ecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCC
Q 030257          106 LQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYN  158 (180)
Q Consensus       106 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n  158 (180)
                      +..+ +......+|.++.+|+.+++..+ ++. ....++.+|.+|+.+.+..+
T Consensus       304 l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~-I~~~aF~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          304 LLDS-VKFIGEEAFESCTSLVSIDLPYL-VEE-IGKRSFRGCTSLSNINFPLS  353 (394)
T ss_dssp             ECTT-CCEECTTTTTTCTTCCEECCCTT-CCE-ECTTTTTTCTTCCEECCCTT
T ss_pred             cccc-cceechhhhcCCCCCCEEEeCCc-ccE-EhHHhccCCCCCCEEEECcc
Confidence            8654 43333456778888888888654 331 23456778888888888766

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.32  E-value=5.9e-06  Score=60.33  Aligned_cols=133  Identities=15%  Similarity=0.104  Sum_probs=81.5

Q ss_pred             hhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCc
Q 030257           21 NFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAE  100 (180)
Q Consensus        21 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~  100 (180)
                      ..+.....++.+.+..+ +......+|..+..|+.+.+..+ +.......+.++..++.+.+..+ +......++..|++
T Consensus       211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~  287 (379)
T 4h09_A          211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSN  287 (379)
T ss_dssp             TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTT
T ss_pred             cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccc
Confidence            33444666777776544 22244455667777777777665 33344556677777777777554 33234456777777


Q ss_pred             ccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCC
Q 030257          101 LEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYN  158 (180)
Q Consensus       101 L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n  158 (180)
                      |+.+.+.++.+.......|.++.+|+.+.+..+ ++. .-..++.+|.+|+.+.+..+
T Consensus       288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~-I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKT-IQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             CCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCE-ECTTTTTTCTTCCCCCCCTT
T ss_pred             cccccccccccceehhhhhcCCCCCCEEEcCcc-ccE-EHHHHhhCCCCCCEEEECCc
Confidence            877777766665444466777777777777654 321 23345667777777776543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.31  E-value=1.2e-05  Score=58.69  Aligned_cols=114  Identities=13%  Similarity=0.154  Sum_probs=76.9

Q ss_pred             cCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhc
Q 030257           17 ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELG   96 (180)
Q Consensus        17 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~   96 (180)
                      .+....+.++..|+.+.+..+ +......+|..+.+++.+.+..+ +.......|.++.+|+.+.+..+.++.....+|.
T Consensus       230 ~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~  307 (379)
T 4h09_A          230 TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFM  307 (379)
T ss_dssp             EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTT
T ss_pred             EEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhc
Confidence            344555556778888887664 44345566777888888887654 3334455677888888888877766645566788


Q ss_pred             CCCcccEEEecCCcCCCCccccccCCCCCCeEEcccC
Q 030257           97 NLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVN  133 (180)
Q Consensus        97 ~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  133 (180)
                      +|.+|+.+.+..+ +......+|.++.+|+.+.+..+
T Consensus       308 ~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          308 DCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             TCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             CCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            8888888888644 43333456777788888777654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.31  E-value=3.6e-06  Score=61.89  Aligned_cols=135  Identities=15%  Similarity=0.218  Sum_probs=95.7

Q ss_pred             cCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhc
Q 030257           17 ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELG   96 (180)
Q Consensus        17 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~   96 (180)
                      .+....|.++..|+.+.+.+.... ....+|.++..|+.+.+... +.......|.++.+|+.+.+..+ ++.....+|.
T Consensus       255 ~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~  331 (394)
T 4gt6_A          255 RIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSSR-ITELPESVFAGCISLKSIDIPEG-ITQILDDAFA  331 (394)
T ss_dssp             EECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred             EcccceeeecccccEEecccccce-ecCcccccccccccccCCCc-ccccCceeecCCCCcCEEEeCCc-ccEehHhHhh
Confidence            345566777899999999765433 55677889999999999753 44466678999999999999865 4445667899


Q ss_pred             CCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCc
Q 030257           97 NLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQ  159 (180)
Q Consensus        97 ~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~  159 (180)
                      +|.+|+.+.+..+ ++.....+|.++.+|+.+++.++...   . ..+..+.+|+.+.+..+.
T Consensus       332 ~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~-~~~~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          332 GCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---W-NAISTDSGLQNLPVAPGS  389 (394)
T ss_dssp             TCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---H-HTCBCCCCC---------
T ss_pred             CCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---h-hhhhccCCCCEEEeCCCC
Confidence            9999999999754 55445678899999999999887542   1 345667888888876654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.69  E-value=1.4e-05  Score=52.91  Aligned_cols=112  Identities=15%  Similarity=0.219  Sum_probs=61.7

Q ss_pred             CCCCccEEEeccc-cccc----ccchhhhccCCccEEEeeCCcCCCC----cchhhcCCCcccEEEecCCcCCCCc----
Q 030257           49 NCKRLRNISLSLD-DFSG----TIPKEIGNVTKLIRLYLRGNQLQGE----IPEELGNLAELEMLWLQNNFLTRAI----  115 (180)
Q Consensus        49 ~l~~L~~L~l~~~-~~~~----~~~~~~~~l~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~----  115 (180)
                      .-+.|++|+++++ .+..    ...+.+..-..|+.|++.+|.+...    +.+.+..-+.|+.|++++|.+.+..    
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            3455666666653 4432    1233444556677777777665432    2223334466777777777775432    


Q ss_pred             cccccCCCCCCeEEcccCc---CCCC---CCcccccCCCCccEEEccCCcc
Q 030257          116 PSSIFNLSSLSNLDLSVNN---LTGG---IIPSLLGNQSSLQTLYLSYNQL  160 (180)
Q Consensus       116 ~~~l~~~~~L~~L~l~~~~---~~~~---~~~~~~~~~~~L~~l~l~~n~~  160 (180)
                      .+.+..-..|++|+++++.   +.+.   .+...+...+.|..|+++.+.+
T Consensus       119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            2344455667778776542   2211   1233456667788888876653

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.69  E-value=2.8e-05  Score=51.48  Aligned_cols=112  Identities=17%  Similarity=0.156  Sum_probs=79.4

Q ss_pred             hcCCCccEEEcccc-cCCC----CCCccccCCCCccEEEecccccccc----cchhhhccCCccEEEeeCCcCCCCc---
Q 030257           24 NHLSNLESLFLKNN-MFHG----KIPSTLSNCKRLRNISLSLDDFSGT----IPKEIGNVTKLIRLYLRGNQLQGEI---   91 (180)
Q Consensus        24 ~~l~~L~~L~l~~~-~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~l~l~~~~~~~~~---   91 (180)
                      .+-+.|++|+++++ .+.+    .+..++..-+.|+.|++++|.+...    +.+.+..-..|++|++++|.+....   
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            44578999999985 6653    2445566778999999999998743    3344556789999999999987543   


Q ss_pred             -chhhcCCCcccEEEecCC---cCCCC----ccccccCCCCCCeEEcccCcC
Q 030257           92 -PEELGNLAELEMLWLQNN---FLTRA----IPSSIFNLSSLSNLDLSVNNL  135 (180)
Q Consensus        92 -~~~~~~~~~L~~l~l~~~---~~~~~----~~~~l~~~~~L~~L~l~~~~~  135 (180)
                       .+++..-+.|+.|+++++   .+.+.    +...+..-++|+.|++..+.+
T Consensus       118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence             234555577999999765   33322    334555668899999987654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.93  E-value=0.0019  Score=39.77  Aligned_cols=34  Identities=15%  Similarity=0.195  Sum_probs=16.1

Q ss_pred             ccEEEecccccccccchhhhccCCccEEEeeCCc
Q 030257           53 LRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQ   86 (180)
Q Consensus        53 L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~   86 (180)
                      ++.|++++|.++...++.|..+++|+++++.+|.
T Consensus        33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             CCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            4444444444444434444444555555555443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.66  E-value=0.0018  Score=39.85  Aligned_cols=56  Identities=21%  Similarity=0.294  Sum_probs=42.9

Q ss_pred             EEEeeCCeec-ccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccc
Q 030257            6 SIRFTNNTLF-GELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFS   64 (180)
Q Consensus         6 ~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~   64 (180)
                      .++.++..++ ..+|..+   -+++++|+|++|.+....+..|..+++|+.|++.+|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4566666654 2466544   236899999999999777778889999999999999874

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=87.29  E-value=2  Score=24.74  Aligned_cols=43  Identities=12%  Similarity=0.172  Sum_probs=21.9

Q ss_pred             cCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecc
Q 030257           17 ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL   60 (180)
Q Consensus        17 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~   60 (180)
                      .+....|.++..|+.+.+..+ +......+|.+|.+|+.+.+..
T Consensus        10 ~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~   52 (100)
T 2lz0_A           10 GMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG   52 (100)
T ss_dssp             SSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred             EecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence            344445555555555555543 2224444555555555555544

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=84.51  E-value=1.7  Score=25.11  Aligned_cols=44  Identities=20%  Similarity=0.178  Sum_probs=21.6

Q ss_pred             CCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeC
Q 030257           40 HGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG   84 (180)
Q Consensus        40 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~   84 (180)
                      +.....+|.+|.+|+.+.+..+- .......|.++.+|+.+.+..
T Consensus         9 t~I~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~   52 (100)
T 2lz0_A            9 VGMDKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTG   52 (100)
T ss_dssp             CSSCSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECC
T ss_pred             CEecHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcC
Confidence            33344555566666666655542 223334455555555555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	180
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 56.9 bits (136), Expect = 1e-10
 Identities = 40/178 (22%), Positives = 68/178 (38%), Gaps = 32/178 (17%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +++L  +    N L           L+NL  L L NN      P  LS   +L  + L  
Sbjct: 218 LTNLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 272

Query: 61  DDFSGTIP--------------------KEIGNVTKLIRLYLRGNQLQGEIPEELGNLAE 100
           +  S   P                      I N+  L  L L  N +    P  + +L +
Sbjct: 273 NQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTK 330

Query: 101 LEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYN 158
           L+ L+  NN ++    SS+ NL++++ L    N ++  + P  L N + +  L L+  
Sbjct: 331 LQRLFFANNKVS--DVSSLANLTNINWLSAGHNQISD-LTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 56.5 bits (135), Expect = 1e-10
 Identities = 45/191 (23%), Positives = 74/191 (38%), Gaps = 32/191 (16%)

Query: 6   SIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSG 65
           S+  TNN +    P       +NL+ L L  N        TL++   L ++ L+ +  S 
Sbjct: 201 SLIATNNQISDITPLGIL---TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN 255

Query: 66  TIPKEIGNVTKLIRLYLRGNQLQGEIP--------------------EELGNLAELEMLW 105
             P  +  +TKL  L L  NQ+    P                      + NL  L  L 
Sbjct: 256 LAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLT 313

Query: 106 LQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIP 165
           L  N ++   P  + +L+ L  L  + N ++     S L N +++  L   +NQ+S   P
Sbjct: 314 LYFNNISDISP--VSSLTKLQRLFFANNKVSD---VSSLANLTNINWLSAGHNQISDLTP 368

Query: 166 SFILCKFSLLD 176
              L + + L 
Sbjct: 369 LANLTRITQLG 379

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.7 bits (125), Expect = 2e-09
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 5/164 (3%)

Query: 11  NNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKE 70
            N    E+      +L NL +L L NN      P   +   +L  + LS +       K 
Sbjct: 39  QNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM 98

Query: 71  IGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDL 130
              + +L        +++  +   L  +  +E L       +     +   +  LS + +
Sbjct: 99  PKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSGIENGAFQGMKKLSYIRI 157

Query: 131 SVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKFSL 174
           +  N+T   IP   G   SL  L+L  N+++    + +    +L
Sbjct: 158 ADTNIT--TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNL 197

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.9 bits (97), Expect = 1e-05
 Identities = 33/158 (20%), Positives = 57/158 (36%), Gaps = 11/158 (6%)

Query: 5   LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFS 64
           LS     +T    +P        +L  L L  N       ++L     L  + LS +  S
Sbjct: 152 LSYIRIADTNITTIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 208

Query: 65  GTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTR------AIPSS 118
                 + N   L  L+L  N+L  ++P  L +   +++++L NN ++         P  
Sbjct: 209 AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY 267

Query: 119 IFNLSSLSNLDLSVNNLT-GGIIPSLLGNQSSLQTLYL 155
               +S S + L  N +    I PS          + L
Sbjct: 268 NTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.6 bits (96), Expect = 2e-05
 Identities = 23/148 (15%), Positives = 47/148 (31%), Gaps = 9/148 (6%)

Query: 19  PPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLI 78
                  +  L  + + +            +   L  + L  +  +      +  +  L 
Sbjct: 142 ENGAFQGMKKLSYIRIADTNITTIPQGLPPS---LTELHLDGNKITKVDAASLKGLNNLA 198

Query: 79  RLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG- 137
           +L L  N +       L N   L  L L NN L + +P  + +   +  + L  NN++  
Sbjct: 199 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAI 257

Query: 138 ----GIIPSLLGNQSSLQTLYLSYNQLS 161
                  P     ++S   + L  N + 
Sbjct: 258 GSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.9 bits (84), Expect = 8e-04
 Identities = 32/176 (18%), Positives = 61/176 (34%), Gaps = 5/176 (2%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +  L  +  + N L  ELP      L  L     +       + + L+    +   +  L
Sbjct: 78  LVKLERLYLSKNQL-KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL 136

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
              SG        + KL  + +    +   IP+  G    L  L L  N +T+   +S+ 
Sbjct: 137 K-SSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLK 192

Query: 121 NLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKFSLLD 176
            L++L+ L LS N+++     SL       +    +   +  P          ++ 
Sbjct: 193 GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVY 248

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (123), Expect = 4e-09
 Identities = 34/162 (20%), Positives = 60/162 (37%), Gaps = 2/162 (1%)

Query: 5   LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFS 64
           L     +     EL P     L+ L+ L+L++N        T  +   L ++ L  +  S
Sbjct: 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 166

Query: 65  GTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSS 124
               +    +  L RL L  N++    P    +L  L  L+L  N L+     ++  L +
Sbjct: 167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226

Query: 125 LSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPS 166
           L  L L+ N              + LQ    S +++   +P 
Sbjct: 227 LQYLRLNDNPWVCDC--RARPLWAWLQKFRGSSSEVPCSLPQ 266

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (122), Expect = 5e-09
 Identities = 33/159 (20%), Positives = 54/159 (33%), Gaps = 1/159 (0%)

Query: 14  LFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGN 73
               + P   + L  L +L L         P        L+ + L  +           +
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 74  VTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVN 133
           +  L  L+L GN++          L  L+ L L  N +    P +  +L  L  L L  N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 134 NLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKF 172
           NL+  +    L    +LQ L L+ N       +  L  +
Sbjct: 212 NLS-ALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW 249

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 2e-08
 Identities = 36/162 (22%), Positives = 57/162 (35%), Gaps = 6/162 (3%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +++L  +   +N L   LP +    L NL  LFL  N               L  + L  
Sbjct: 128 LAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           +  +   P    ++ +L+ LYL  N L     E L  L  L+ L L +N       +   
Sbjct: 187 NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL 246

Query: 121 NLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSG 162
             + L     S + +   +   L G         L+ N L G
Sbjct: 247 -WAWLQKFRGSSSEVPCSLPQRLAG----RDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 6e-05
 Identities = 39/174 (22%), Positives = 58/174 (33%), Gaps = 1/174 (0%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
             +L  +   +N L       F       +     N       P+T     RL  + L  
Sbjct: 55  CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDR 114

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
                  P     +  L  LYL+ N LQ    +   +L  L  L+L  N ++     +  
Sbjct: 115 CGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR 174

Query: 121 NLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKFSL 174
            L SL  L L  N +   + P    +   L TLYL  N LS      +    +L
Sbjct: 175 GLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL 227

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 51.3 bits (121), Expect = 1e-08
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 81  YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNN-LTGGI 139
            LR N++ G +P+ L  L  L  L +  N L   IP    NL        + N  L G  
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP 308

Query: 140 IPS 142
           +P+
Sbjct: 309 LPA 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 50.5 bits (119), Expect = 2e-08
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%)

Query: 105 WLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQL--SG 162
            L+NN +   +P  +  L  L +L++S NNL G  IP   GN         + N+     
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG-EIPQG-GNLQRFDVSAYANNKCLCGS 307

Query: 163 PIPS 166
           P+P+
Sbjct: 308 PLPA 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 49.0 bits (115), Expect = 6e-08
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 1/68 (1%)

Query: 49  NCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQN 108
             K L  + L  +   GT+P+ +  +  L  L +  N L GEIP+  GNL   ++    N
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYAN 300

Query: 109 NFLTRAIP 116
           N      P
Sbjct: 301 NKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 44.7 bits (104), Expect = 2e-06
 Identities = 27/148 (18%), Positives = 44/148 (29%), Gaps = 2/148 (1%)

Query: 20  PNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIR 79
           P   + L NL  +    N   G IP +  +  +L        +   T           + 
Sbjct: 142 PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN-RLTGKIPPTFANLNLA 200

Query: 80  LYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGI 139
                  +       L    +                  +    +L+ LDL  N + G  
Sbjct: 201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYG-T 259

Query: 140 IPSLLGNQSSLQTLYLSYNQLSGPIPSF 167
           +P  L     L +L +S+N L G IP  
Sbjct: 260 LPQGLTQLKFLHSLNVSFNNLCGEIPQG 287

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.9 bits (103), Expect = 8e-07
 Identities = 28/122 (22%), Positives = 41/122 (33%), Gaps = 4/122 (3%)

Query: 58  LSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPS 117
           L L     T+   +  +  +  L L  N+L+   P  L  L  LE+L   +N        
Sbjct: 3   LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNA--LENVD 59

Query: 118 SIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKFSLLDN 177
            + NL  L  L L  N L        L +   L  L L  N L             +L +
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEMLPS 118

Query: 178 IR 179
           + 
Sbjct: 119 VS 120

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 9e-07
 Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 9/92 (9%)

Query: 77  LIRLYLRGNQLQGE-IPEELGNLAELEMLWLQNNFLT----RAIPSSIFNLSSLSNLDLS 131
           +  L ++  +L      E L  L + +++ L +  LT    + I S++    +L+ L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 132 VNNLTG----GIIPSLLGNQSSLQTLYLSYNQ 159
            N L       ++  L      +Q L L    
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 9e-07
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 8/76 (10%)

Query: 101 LEMLWLQNNFLT----RAIPSSIFNLSSLSNLDLSVNNLTG----GIIPSLLGNQSSLQT 152
           L +LWL +  ++     ++ +++    SL  LDLS N L       ++ S+      L+ 
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430

Query: 153 LYLSYNQLSGPIPSFI 168
           L L     S  +   +
Sbjct: 431 LVLYDIYWSEEMEDRL 446

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 1e-05
 Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 4/73 (5%)

Query: 100 ELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNNLTG---GIIPSLLGNQSSLQTLYL 155
           +++ L +Q   L+ A  + +   L     + L    LT      I S L    +L  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 156 SYNQLSGPIPSFI 168
             N+L       +
Sbjct: 63  RSNELGDVGVHCV 75

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 4e-05
 Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 9/90 (10%)

Query: 20  PNFCNHLSNLESLFLKNNMFHGK----IPSTLSNCKRLRNISLSLDDFSGTIPKEIG--- 72
                  S L  L+L +          + +TL     LR + LS +        ++    
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 73  --NVTKLIRLYLRGNQLQGEIPEELGNLAE 100
                 L +L L       E+ + L  L +
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 3e-04
 Identities = 16/90 (17%), Positives = 25/90 (27%), Gaps = 9/90 (10%)

Query: 73  NVTKLIRLYLRGNQLQGE----IPEELGNLAELEMLWLQNNFLTRAIPSSIF-----NLS 123
             + L  L+L    +       +   L     L  L L NN L  A    +         
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 124 SLSNLDLSVNNLTGGIIPSLLGNQSSLQTL 153
            L  L L     +  +   L   +    +L
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALEKDKPSL 456

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (81), Expect = 0.001
 Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 5/89 (5%)

Query: 28  NLESLFLKNNMF-HGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNV----TKLIRLYL 82
           +++SL ++       +    L   ++ + + L     +    K+I +       L  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 83  RGNQLQGEIPEELGNLAELEMLWLQNNFL 111
           R N+L       +    +     +Q   L
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSL 91

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (80), Expect = 0.002
 Identities = 9/56 (16%), Positives = 17/56 (30%)

Query: 124 SLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCKFSLLDNIR 179
            + +LD+    L+      LL      Q + L    L+      I     +   + 
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALA 58

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.0 bits (102), Expect = 3e-06
 Identities = 24/88 (27%), Positives = 32/88 (36%), Gaps = 10/88 (11%)

Query: 81  YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGII 140
               N    EI         LE L + NN L   +P+       L  L  S N+L    +
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALP---PRLERLIASFNHLAE--V 319

Query: 141 PSLLGNQSSLQTLYLSYNQLSGPIPSFI 168
           P L  N   L+ L++ YN L    P   
Sbjct: 320 PELPQN---LKQLHVEYNPLRE-FPDIP 343

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 1e-04
 Identities = 21/93 (22%), Positives = 33/93 (35%), Gaps = 9/93 (9%)

Query: 33  FLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIP 92
               N    +I S       L  +++S +     +P        L RL    N L  E+P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVP 320

Query: 93  EELGNLAELEMLWLQNNFLTRAIPSSIFNLSSL 125
           E   N   L+ L ++ N L    P    ++  L
Sbjct: 321 ELPQN---LKQLHVEYNPLRE-FPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.9 bits (86), Expect = 3e-04
 Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 9/83 (10%)

Query: 21  NFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80
           + C+   +LE L + NN    ++P+       L  +  S +  +  +P+   N   L +L
Sbjct: 278 SLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVPELPQN---LKQL 329

Query: 81  YLRGNQLQGEIPEELGNLAELEM 103
           ++  N L+ E P+   ++ +L M
Sbjct: 330 HVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 35.2 bits (79), Expect = 0.003
 Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 8/77 (10%)

Query: 103 MLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSG 162
                 N  +  I S      SL  L++S N L    +P+L      L+ L  S+N L+ 
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE--LPALPPR---LERLIASFNHLAE 318

Query: 163 PIPSFI--LCKFSLLDN 177
            +P     L +  +  N
Sbjct: 319 -VPELPQNLKQLHVEYN 334

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 2e-04
 Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 70  EIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLD 129
           E+  V   + +      L   +P +L    +  +L L  N L     +++   + L+ L+
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 130 LS 131
           L 
Sbjct: 62  LD 63

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 4e-04
 Identities = 16/51 (31%), Positives = 17/51 (33%), Gaps = 1/51 (1%)

Query: 85  NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNL 135
           N L       L  L  L+ L LQ N L   IP   F    L    L  N  
Sbjct: 158 NNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 4e-04
 Identities = 42/204 (20%), Positives = 64/204 (31%), Gaps = 51/204 (25%)

Query: 2   SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLS-- 59
           +S L +      L   LPP+      +   L L  N+ +    +TL    RL  ++L   
Sbjct: 10  ASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 60  -------------------------------------------LDDFSGTIPKEIGNVTK 76
                                                       +  +      +  + +
Sbjct: 66  ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125

Query: 77  LIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136
           L  LYL+GN+L+   P  L    +LE L L NN LT      +  L +L  L L  N+L 
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185

Query: 137 GGIIPSLLGNQSSLQTLYLSYNQL 160
              IP        L   +L  N  
Sbjct: 186 --TIPKGFFGSHLLPFAFLHGNPW 207

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 35.9 bits (81), Expect = 0.001
 Identities = 27/141 (19%), Positives = 53/141 (37%), Gaps = 3/141 (2%)

Query: 27  SNLESLFLKNNMFHGKIPSTL-SNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGN 85
            +   L L +N         L      L  + L  +  +G  P      + +  L L  N
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88

Query: 86  QLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLG 145
           +++    +    L +L+ L L +N ++  +P S  +L+SL++L+  + +        L  
Sbjct: 89  KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN--LASNPFNCNCHLAW 146

Query: 146 NQSSLQTLYLSYNQLSGPIPS 166
               L+   L+        PS
Sbjct: 147 FAEWLRKKSLNGGAARCGAPS 167

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (82), Expect = 0.001
 Identities = 13/55 (23%), Positives = 20/55 (36%)

Query: 5   LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLS 59
             +  ++N    ELP +  +  S    L +     H      L N K+LR  S  
Sbjct: 179 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	180
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.86
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.84
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.84
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.81
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.8
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.78
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.77
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.76
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.76
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.72
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.71
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.67
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.66
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.66
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.66
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.66
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.62
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.61
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.59
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.58
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.54
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.53
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.44
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.42
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.39
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.39
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.39
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.15
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.14
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.99
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.97
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.77
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.74
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.54
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.36
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.33
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.21
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.85
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.81

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=6.7e-21  Score=131.78  Aligned_cols=163  Identities=25%  Similarity=0.260  Sum_probs=116.4

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   81 (180)
                      +++++|++++|.+. .++...+.++++|++|++++|.+. ..+ .+..+++|++|++++|.+. ..+..+..+++|++++
T Consensus        31 ~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~  106 (266)
T d1p9ag_          31 KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD  106 (266)
T ss_dssp             TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEE
T ss_pred             cCCCEEECcCCcCC-CcCHHHhhcccccccccccccccc-ccc-ccccccccccccccccccc-cccccccccccccccc
Confidence            46889999999887 677777777999999999999887 333 3567888888888888876 3455677788888888


Q ss_pred             eeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCccc
Q 030257           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS  161 (180)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  161 (180)
                      +.++.+....+..+..+.+++.+++++|.+....+..+..+++++.+++++|.+++. .+..+..+++|+.|++++|.++
T Consensus       107 l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~L~  185 (266)
T d1p9ag_         107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL-PAGLLNGLENLDTLLLQENSLY  185 (266)
T ss_dssp             CCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC-CTTTTTTCTTCCEEECCSSCCC
T ss_pred             ccccccceeeccccccccccccccccccccceeccccccccccchhccccccccccc-CccccccccccceeecccCCCc
Confidence            888776655555566667777777777777655555666667777777777776642 3445666677777777777766


Q ss_pred             CCCChhhhh
Q 030257          162 GPIPSFILC  170 (180)
Q Consensus       162 ~~~~~~~~~  170 (180)
                       .+|+.+..
T Consensus       186 -~lp~~~~~  193 (266)
T d1p9ag_         186 -TIPKGFFG  193 (266)
T ss_dssp             -CCCTTTTT
T ss_pred             -ccChhHCC
Confidence             46655544

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=3.5e-20  Score=129.28  Aligned_cols=168  Identities=24%  Similarity=0.279  Sum_probs=126.3

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCC-------------------------CCCccccCCCCccEE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHG-------------------------KIPSTLSNCKRLRNI   56 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-------------------------~~~~~~~~l~~L~~L   56 (180)
                      +++++|++++|.+. .+|...+.++++|++|+++++.+..                         ..+..|.++++|+++
T Consensus        32 ~~~~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L  110 (284)
T d1ozna_          32 AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (284)
T ss_dssp             TTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCEEECcCCcCC-CCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEE
Confidence            36788999999887 6787777779999999998875431                         124456677888888


Q ss_pred             EecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCC
Q 030257           57 SLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT  136 (180)
Q Consensus        57 ~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  136 (180)
                      ++.+|.+....+..+....+|+.+++.+|.++...+..+..+++++.+++++|.+.+..+..+..+++|+.+++++|.++
T Consensus       111 ~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~  190 (284)
T d1ozna_         111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA  190 (284)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             ecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcccc
Confidence            88888776556666777778888888888877555566777788888888888887655677778888888888888877


Q ss_pred             CCCCcccccCCCCccEEEccCCcccCCCChhhhhh
Q 030257          137 GGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCK  171 (180)
Q Consensus       137 ~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~  171 (180)
                      +. .+..+..+++++.+++++|.+.+..+..+...
T Consensus       191 ~i-~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~  224 (284)
T d1ozna_         191 HV-HPHAFRDLGRLMTLYLFANNLSALPTEALAPL  224 (284)
T ss_dssp             EE-CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTC
T ss_pred             cc-ChhHhhhhhhcccccccccccccccccccccc
Confidence            43 56677778888888888888886665555544

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=5.7e-20  Score=127.07  Aligned_cols=156  Identities=25%  Similarity=0.276  Sum_probs=136.6

Q ss_pred             CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (180)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   80 (180)
                      +++|++|++++|.+. .++..  ..+++|++|++++|.+. ..+..+..+++|+.++++++.+....+..+..+.+++++
T Consensus        54 l~~L~~L~L~~N~l~-~l~~~--~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L  129 (266)
T d1p9ag_          54 YTRLTQLNLDRAELT-KLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL  129 (266)
T ss_dssp             CTTCCEEECTTSCCC-EEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEE
T ss_pred             ccccccccccccccc-ccccc--ccccccccccccccccc-ccccccccccccccccccccccceeeccccccccccccc
Confidence            578999999999987 55542  45999999999999988 556778899999999999999887777788899999999


Q ss_pred             EeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcc
Q 030257           81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQL  160 (180)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~  160 (180)
                      ++.+|.+....+..+..+++++.+++++|.+++..++.+..+++|++|++++|+++  .++..+..+++|+.|++++|+.
T Consensus       130 ~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~--~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY--TIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCCCSEEECCSCCB
T ss_pred             cccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc--ccChhHCCCCCCCEEEecCCCC
Confidence            99999988666667788999999999999999877788999999999999999998  3777777889999999999987


Q ss_pred             cC
Q 030257          161 SG  162 (180)
Q Consensus       161 ~~  162 (180)
                      .-
T Consensus       208 ~C  209 (266)
T d1p9ag_         208 LC  209 (266)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.81  E-value=1.8e-19  Score=127.21  Aligned_cols=45  Identities=36%  Similarity=0.537  Sum_probs=28.5

Q ss_pred             CCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCCCh
Q 030257          121 NLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPS  166 (180)
Q Consensus       121 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  166 (180)
                      .+++++.|++++|++++. +|..+.++++|+.|++++|.+++.+|.
T Consensus       242 ~~~~L~~L~Ls~N~l~g~-iP~~l~~L~~L~~L~Ls~N~l~g~iP~  286 (313)
T d1ogqa_         242 LSKNLNGLDLRNNRIYGT-LPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             CCTTCCEEECCSSCCEEC-CCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             cccccccccCccCeeccc-CChHHhCCCCCCEEECcCCcccccCCC
Confidence            345566666666666543 556666666777777777766666664

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=5.5e-19  Score=123.10  Aligned_cols=148  Identities=22%  Similarity=0.256  Sum_probs=128.8

Q ss_pred             cCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhc
Q 030257           17 ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELG   96 (180)
Q Consensus        17 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~   96 (180)
                      .++...+.++++|++|++++|.+....+..+..+.+|+.+++.+|.+....+..+..++++++|++.+|.+....+.++.
T Consensus        95 ~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~  174 (284)
T d1ozna_          95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR  174 (284)
T ss_dssp             CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred             cccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhc
Confidence            34455566789999999999998766677788899999999999999877778899999999999999999866677889


Q ss_pred             CCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCCC
Q 030257           97 NLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIP  165 (180)
Q Consensus        97 ~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  165 (180)
                      ++++|+.+++++|.+.+..+..+..++++++|++++|.+.+. .+..+..+++|+.+++++|++....+
T Consensus       175 ~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         175 GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL-PTEALAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC-CHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             cccccchhhhhhccccccChhHhhhhhhcccccccccccccc-cccccccccccCEEEecCCCCCCCcc
Confidence            999999999999999987789999999999999999999853 56778899999999999999876544

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.78  E-value=5.8e-18  Score=118.95  Aligned_cols=158  Identities=23%  Similarity=0.287  Sum_probs=104.8

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccc---------------
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGT---------------   66 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~---------------   66 (180)
                      +++++|++++|.+. .++...+.++++|++|+++++.+....+.+|.++++|+.+++.+|.+...               
T Consensus        31 ~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~~  109 (305)
T d1xkua_          31 PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHE  109 (305)
T ss_dssp             TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCS
T ss_pred             CCCCEEECcCCcCC-CcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccchhhhhhhhhccc
Confidence            56888899888886 67776677788899999988888866677788888888888877654310               


Q ss_pred             --------------------------------cchhhhccCCccEEEeeCCcC---------------------CCCcch
Q 030257           67 --------------------------------IPKEIGNVTKLIRLYLRGNQL---------------------QGEIPE   93 (180)
Q Consensus        67 --------------------------------~~~~~~~l~~L~~l~l~~~~~---------------------~~~~~~   93 (180)
                                                      .+..+..+++++.+++.++.+                     ....+.
T Consensus       110 n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~L~~L~l~~n~~~~~~~~  189 (305)
T d1xkua_         110 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAA  189 (305)
T ss_dssp             SCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTG
T ss_pred             cchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcccCCccCEEECCCCcCCCCChh
Confidence                                            111233344455555554443                     222334


Q ss_pred             hhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccC
Q 030257           94 ELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSG  162 (180)
Q Consensus        94 ~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  162 (180)
                      .+..++.++.+++++|.+.+..+..+.++++|++|++++|.++  .++..+..+++|+.|++++|+++.
T Consensus       190 ~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~--~lp~~l~~l~~L~~L~Ls~N~i~~  256 (305)
T d1xkua_         190 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV--KVPGGLADHKYIQVVYLHNNNISA  256 (305)
T ss_dssp             GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS--SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred             Hhhccccccccccccccccccccccccccccceeeeccccccc--ccccccccccCCCEEECCCCccCc
Confidence            4555566666666666666555556666777777777777776  355566677777777777777764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.77  E-value=3.9e-19  Score=117.13  Aligned_cols=129  Identities=21%  Similarity=0.304  Sum_probs=109.3

Q ss_pred             ceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCC-CCCccccCCCCccEEEecccccccccchhhhccCCccEEEe
Q 030257            4 LLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHG-KIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL   82 (180)
Q Consensus         4 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l   82 (180)
                      .+.++.++++++ .+|.++.   +++++|++++|.+.. ..+..|..+++|+.|++++|.+....+..+..+++|++|++
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp---~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~L   85 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCEEEEeCCCcC-ccCCCCC---CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeee
Confidence            356788888887 7887663   578999999999974 44667788999999999999998788888889999999999


Q ss_pred             eCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCC
Q 030257           83 RGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT  136 (180)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  136 (180)
                      ++|.+.+..+.+|.++++|+.|++++|.++...++.|..+++|+++++++|.+.
T Consensus        86 s~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             ccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            999988766778889999999999999998767788889999999999999775

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.76  E-value=8.1e-18  Score=118.61  Aligned_cols=167  Identities=24%  Similarity=0.366  Sum_probs=112.6

Q ss_pred             CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCc-cE
Q 030257            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKL-IR   79 (180)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L-~~   79 (180)
                      |++|++|++++|.+.+. +...+..+..|+.+++..|.+....|..+..++.++.+++++|.+....|..+..+..+ +.
T Consensus       100 L~~L~~L~Ls~N~l~~~-~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~  178 (313)
T d1ogqa_         100 LTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTS  178 (313)
T ss_dssp             CTTCSEEEEEEECCEEE-CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCE
T ss_pred             ccccchhhhcccccccc-ccccccchhhhcccccccccccccCchhhccCcccceeeccccccccccccccccccccccc
Confidence            57889999999888754 44444558888888888888777778888888888888888887776666666666554 66


Q ss_pred             EEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCc
Q 030257           80 LYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQ  159 (180)
Q Consensus        80 l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~  159 (180)
                      +++..|.+....+..+..+.. ..+++..+...+..+..+..+++++.++++++.+.+  .+..+..+++++.|++++|.
T Consensus       179 l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~--~~~~~~~~~~L~~L~Ls~N~  255 (313)
T d1ogqa_         179 MTISRNRLTGKIPPTFANLNL-AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF--DLGKVGLSKNLNGLDLRNNR  255 (313)
T ss_dssp             EECCSSEEEEECCGGGGGCCC-SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC--BGGGCCCCTTCCEEECCSSC
T ss_pred             ccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccc--cccccccccccccccCccCe
Confidence            667766665444555544433 346666666655556666666666666666666653  22345556666777777776


Q ss_pred             ccCCCChhhhhh
Q 030257          160 LSGPIPSFILCK  171 (180)
Q Consensus       160 ~~~~~~~~~~~~  171 (180)
                      +++.+|..++.+
T Consensus       256 l~g~iP~~l~~L  267 (313)
T d1ogqa_         256 IYGTLPQGLTQL  267 (313)
T ss_dssp             CEECCCGGGGGC
T ss_pred             ecccCChHHhCC
Confidence            666666666555

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=4.5e-17  Score=107.71  Aligned_cols=147  Identities=26%  Similarity=0.357  Sum_probs=121.4

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   81 (180)
                      +++++|++.++.+. .+. + ...+++|++|++++|.+.+. + .+.++++|++|++++|.+...  ..+..++.|++++
T Consensus        40 ~~l~~L~l~~~~i~-~l~-~-l~~l~nL~~L~Ls~N~l~~~-~-~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~  112 (199)
T d2omxa2          40 DQVTTLQADRLGIK-SID-G-VEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIADI--TPLANLTNLTGLT  112 (199)
T ss_dssp             TTCCEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEE
T ss_pred             cCCCEEECCCCCCC-Ccc-c-cccCCCcCcCccccccccCc-c-cccCCcccccccccccccccc--ccccccccccccc
Confidence            57899999999987 443 3 35599999999999998743 3 388999999999999988643  3488999999999


Q ss_pred             eeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCccc
Q 030257           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS  161 (180)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  161 (180)
                      +.++....  ...+..+++|+.+++++|.+..  ...+..+++++.|++.+|.+++  ++ .+.++++|+.|++++|+++
T Consensus       113 l~~~~~~~--~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~--l~-~l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         113 LFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTD--LK-PLANLTTLERLDISSNKVS  185 (199)
T ss_dssp             CCSSCCCC--CGGGTTCTTCSEEECCSSCCCC--CGGGTTCTTCSEEECCSSCCCC--CG-GGTTCTTCCEEECCSSCCC
T ss_pred             cccccccc--ccccchhhhhHHhhhhhhhhcc--cccccccccccccccccccccC--Cc-cccCCCCCCEEECCCCCCC
Confidence            99988763  3457789999999999999864  3457889999999999999984  33 4788999999999999988


Q ss_pred             C
Q 030257          162 G  162 (180)
Q Consensus       162 ~  162 (180)
                      +
T Consensus       186 ~  186 (199)
T d2omxa2         186 D  186 (199)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=1.1e-16  Score=106.67  Aligned_cols=154  Identities=29%  Similarity=0.361  Sum_probs=122.7

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   81 (180)
                      .++++|++.++.+. .++ + +..+++|++|++++|.+.+ .+ .+..+++|++|++++|.+... + .+..+++|+.++
T Consensus        46 ~~L~~L~l~~~~i~-~l~-~-l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          46 NSIDQIIANNSDIK-SVQ-G-IQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVKDL-S-SLKDLKKLKSLS  118 (210)
T ss_dssp             HTCCEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCCG-G-GGTTCTTCCEEE
T ss_pred             cCccEEECcCCCCC-Cch-h-HhhCCCCCEEeCCCccccC-cc-ccccCcccccccccccccccc-c-cccccccccccc
Confidence            46889999999886 343 3 3569999999999999884 33 367899999999999998743 3 588899999999


Q ss_pred             eeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCccc
Q 030257           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS  161 (180)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  161 (180)
                      +.++.+..  ...+..++.++.+++++|.+.+  ...+..+++|+++++++|.+++  ++ .+..+++|+.|++++|.++
T Consensus       119 l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~--i~-~l~~l~~L~~L~Ls~N~i~  191 (210)
T d1h6ta2         119 LEHNGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD--IV-PLAGLTKLQNLYLSKNHIS  191 (210)
T ss_dssp             CTTSCCCC--CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC--CG-GGTTCTTCCEEECCSSCCC
T ss_pred             cccccccc--cccccccccccccccccccccc--cccccccccccccccccccccc--cc-cccCCCCCCEEECCCCCCC
Confidence            99998763  3457788999999999999874  3456678999999999999974  33 3778999999999999988


Q ss_pred             CCCChhhhhh
Q 030257          162 GPIPSFILCK  171 (180)
Q Consensus       162 ~~~~~~~~~~  171 (180)
                      + ++ .+..+
T Consensus       192 ~-l~-~l~~l  199 (210)
T d1h6ta2         192 D-LR-ALAGL  199 (210)
T ss_dssp             B-CG-GGTTC
T ss_pred             C-Ch-hhcCC
Confidence            4 54 34443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.72  E-value=2.7e-18  Score=113.03  Aligned_cols=155  Identities=19%  Similarity=0.191  Sum_probs=121.6

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   81 (180)
                      +++++|++++|.+++.++...+.++++|++|++++|.+....+..|..+++|++|++++|++....++.|.++++|++|+
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~  108 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence            47899999999998667788888899999999999999988888999999999999999999988888999999999999


Q ss_pred             eeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccc-cccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcc
Q 030257           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPS-SIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQL  160 (180)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~  160 (180)
                      +.+|.++...+.++..+++|+.+++++|++...... .+..  .++...+..+.++.. .|   ..++.++.++++.+.+
T Consensus       109 L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~--~l~~~~l~~~~~~c~-~p---~~l~~~~l~~L~~n~l  182 (192)
T d1w8aa_         109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE--WLRKKSLNGGAARCG-AP---SKVRDVQIKDLPHSEF  182 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHH--HHHHHCCSGGGCBBC-SS---TTTTTSBGGGSCTTTC
T ss_pred             cCCccccccCHHHhcCCcccccccccccccccccchHHHhh--hhhhhcccCCCeEeC-CC---hhhcCCEeeecCHhhC
Confidence            999999876677889999999999999998643221 1111  133344445544422 22   2345566667777766


Q ss_pred             cC
Q 030257          161 SG  162 (180)
Q Consensus       161 ~~  162 (180)
                      .-
T Consensus       183 ~C  184 (192)
T d1w8aa_         183 KC  184 (192)
T ss_dssp             CC
T ss_pred             cC
Confidence            53

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=3e-16  Score=104.49  Aligned_cols=143  Identities=27%  Similarity=0.424  Sum_probs=111.9

Q ss_pred             CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (180)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   80 (180)
                      +++|++|++++|.++ .++. + .++++|++|++++|++.. .+ .+..+++|+.+++.++....  ...+..++.++.+
T Consensus        67 l~~L~~L~L~~n~i~-~l~~-~-~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~~--~~~l~~l~~l~~l  139 (210)
T d1h6ta2          67 LPNVTKLFLNGNKLT-DIKP-L-ANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD--INGLVHLPQLESL  139 (210)
T ss_dssp             CTTCCEEECCSSCCC-CCGG-G-TTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC--CGGGGGCTTCCEE
T ss_pred             CCCCCEEeCCCcccc-Cccc-c-ccCccccccccccccccc-cc-cccccccccccccccccccc--ccccccccccccc
Confidence            578999999999887 4443 3 458899999999998873 33 47888999999999888753  3457788899999


Q ss_pred             EeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccC
Q 030257           81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSY  157 (180)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~  157 (180)
                      ++.++.++.  +..+..+++|+.+++++|.+.+. + .+.++++|++|++++|.+++  ++ .+..+++|+.|++++
T Consensus       140 ~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~~--l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         140 YLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHISD--LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             ECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCB--CG-GGTTCTTCSEEEEEE
T ss_pred             ccccccccc--ccccccccccccccccccccccc-c-cccCCCCCCEEECCCCCCCC--Ch-hhcCCCCCCEEEccC
Confidence            999888763  34566788999999999988753 2 37788999999999998873  44 477888999998864

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.71  E-value=6.5e-16  Score=108.34  Aligned_cols=125  Identities=18%  Similarity=0.162  Sum_probs=91.7

Q ss_pred             CccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcc
Q 030257           52 RLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLS  131 (180)
Q Consensus        52 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~  131 (180)
                      +++.|++.++......+..+..++.++++++++|.+....+..+..+++|+.|++++|+++ .+|..+..+++|++|+++
T Consensus       172 ~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls  250 (305)
T d1xkua_         172 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLH  250 (305)
T ss_dssp             TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECC
T ss_pred             ccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECC
Confidence            4445555555544455667788899999999999988666778889999999999999997 467788999999999999


Q ss_pred             cCcCCCCC-----CcccccCCCCccEEEccCCccc-CCCChhhhhhcccccc
Q 030257          132 VNNLTGGI-----IPSLLGNQSSLQTLYLSYNQLS-GPIPSFILCKFSLLDN  177 (180)
Q Consensus       132 ~~~~~~~~-----~~~~~~~~~~L~~l~l~~n~~~-~~~~~~~~~~~~~~~~  177 (180)
                      +|.++...     .+.......+|+.+++++|++. ..++...+++......
T Consensus       251 ~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~~~~~~  302 (305)
T d1xkua_         251 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA  302 (305)
T ss_dssp             SSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGG
T ss_pred             CCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhcccccCcc
Confidence            99987421     1123445678999999999874 3444444444344433

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=9e-16  Score=101.33  Aligned_cols=139  Identities=29%  Similarity=0.481  Sum_probs=113.7

Q ss_pred             CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (180)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   80 (180)
                      +++|++|++++|.++ .++.  +.++++|++|++++|.+.. .+ .+.++++|+.+++.++.....  ..+..+++|+.+
T Consensus        61 l~nL~~L~Ls~N~l~-~~~~--l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L  133 (199)
T d2omxa2          61 LNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRL  133 (199)
T ss_dssp             CTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred             CCCcCcCcccccccc-Cccc--ccCCccccccccccccccc-cc-ccccccccccccccccccccc--cccchhhhhHHh
Confidence            579999999999987 4443  4569999999999998763 33 478999999999999987643  457889999999


Q ss_pred             EeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEE
Q 030257           81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTL  153 (180)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l  153 (180)
                      ++++|.+..  ...+..+++++.+++.+|.+++.  ..+.++++|++|++++|.+++  ++ .+..+++|+.|
T Consensus       134 ~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i~~--i~-~l~~L~~L~~L  199 (199)
T d2omxa2         134 ELSSNTISD--ISALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKVSD--IS-VLAKLTNLESL  199 (199)
T ss_dssp             ECCSSCCCC--CGGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC--CG-GGGGCTTCSEE
T ss_pred             hhhhhhhcc--cccccccccccccccccccccCC--ccccCCCCCCEEECCCCCCCC--Cc-cccCCCCCCcC
Confidence            999998863  34578899999999999999753  347889999999999999984  33 46778888875

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.3e-16  Score=102.07  Aligned_cols=127  Identities=17%  Similarity=0.102  Sum_probs=91.7

Q ss_pred             cCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEE
Q 030257           25 HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEML  104 (180)
Q Consensus        25 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l  104 (180)
                      +...+++|++++|++. ..+..+..+++|+.|++++|.+...  +.+..+++|++|++++|.+....+..+..+++|+.+
T Consensus        16 n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          16 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             CTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccccc
Confidence            4667888888888887 4455556788888888888888743  347778888888888888775444455677888888


Q ss_pred             EecCCcCCCCcc-ccccCCCCCCeEEcccCcCCCCCC--cccccCCCCccEEE
Q 030257          105 WLQNNFLTRAIP-SSIFNLSSLSNLDLSVNNLTGGII--PSLLGNQSSLQTLY  154 (180)
Q Consensus       105 ~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~l~  154 (180)
                      ++++|.+.+... ..+..+++|+++++++|.+++...  ...+..+++|+.||
T Consensus        93 ~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          93 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             eeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            888888865322 456778888888888888763211  12466788888876

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=5.1e-15  Score=99.56  Aligned_cols=150  Identities=22%  Similarity=0.283  Sum_probs=107.3

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   81 (180)
                      .+|++|++.+|.+. .++ + +.++++|++|++++|.+.+..  .+..+++++++++.+|.+...  ..+..+++|+.+.
T Consensus        41 ~~L~~L~l~~~~i~-~l~-~-l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~~l~  113 (227)
T d1h6ua2          41 DGITTLSAFGTGVT-TIE-G-VQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD  113 (227)
T ss_dssp             HTCCEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred             CCcCEEECCCCCCC-cch-h-HhcCCCCcEeecCCceeeccc--ccccccccccccccccccccc--ccccccccccccc
Confidence            46788888888876 453 3 345888888888888876432  267788888888888776532  3466677777777


Q ss_pred             eeCCcCCCC--------------------cchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCc
Q 030257           82 LRGNQLQGE--------------------IPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIP  141 (180)
Q Consensus        82 l~~~~~~~~--------------------~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  141 (180)
                      +.++.....                    ....+..+++++.+++++|.+.+.  ..+.++++|++|++++|.+++  ++
T Consensus       114 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~--l~  189 (227)
T d1h6ua2         114 LTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISD--IS  189 (227)
T ss_dssp             CTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC--CG
T ss_pred             cccccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccc--hhhcccccceecccCCCccCC--Ch
Confidence            766643211                    112345567788888888887643  346788999999999998874  33


Q ss_pred             ccccCCCCccEEEccCCcccCC
Q 030257          142 SLLGNQSSLQTLYLSYNQLSGP  163 (180)
Q Consensus       142 ~~~~~~~~L~~l~l~~n~~~~~  163 (180)
                       .+..+++|+.|++++|++++.
T Consensus       190 -~l~~l~~L~~L~Ls~N~lt~i  210 (227)
T d1h6ua2         190 -PLASLPNLIEVHLKNNQISDV  210 (227)
T ss_dssp             -GGGGCTTCCEEECTTSCCCBC
T ss_pred             -hhcCCCCCCEEECcCCcCCCC
Confidence             377889999999999998853

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.5e-16  Score=101.74  Aligned_cols=123  Identities=15%  Similarity=0.178  Sum_probs=64.0

Q ss_pred             CceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEe
Q 030257            3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL   82 (180)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l   82 (180)
                      ++++|++++|.+. .++ ..+..+++|++|++++|.+.. . ..+..+++|++|++++|.+....+..+..+++++++++
T Consensus        19 ~lr~L~L~~n~I~-~i~-~~~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          19 RDRELDLRGYKIP-VIE-NLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   94 (162)
T ss_dssp             SCEEEECTTSCCC-SCC-CGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             cCcEEECCCCCCC-ccC-ccccccccCCEEECCCCCCCc-c-CCcccCcchhhhhcccccccCCCcccccccccccccee
Confidence            4556666666654 343 233345666666666665552 2 23455566666666666655444444455666666666


Q ss_pred             eCCcCCCCc-chhhcCCCcccEEEecCCcCCCCc---cccccCCCCCCeEE
Q 030257           83 RGNQLQGEI-PEELGNLAELEMLWLQNNFLTRAI---PSSIFNLSSLSNLD  129 (180)
Q Consensus        83 ~~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~---~~~l~~~~~L~~L~  129 (180)
                      .+|.+.... ...+..+++|+.+++.+|++++..   +..+..+|+|+.||
T Consensus        95 ~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          95 TNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            666554321 123455566666666666554321   11344555566554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=1.6e-15  Score=92.56  Aligned_cols=102  Identities=26%  Similarity=0.271  Sum_probs=52.3

Q ss_pred             EEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCc
Q 030257           55 NISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNN  134 (180)
Q Consensus        55 ~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  134 (180)
                      .|++++|.++.. + .+..+++|+++++++|.++ ..|..+..+++|+.+++++|.+++. + .+..+++|+++++++|.
T Consensus         2 ~L~Ls~n~l~~l-~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLTVL-C-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCSSC-C-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCCCC-c-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCCc
Confidence            445555555422 1 2445555555555555554 2344455555555555555555432 2 34555566666666665


Q ss_pred             CCCCCCcccccCCCCccEEEccCCccc
Q 030257          135 LTGGIIPSLLGNQSSLQTLYLSYNQLS  161 (180)
Q Consensus       135 ~~~~~~~~~~~~~~~L~~l~l~~n~~~  161 (180)
                      +++......+..+++|+.+++++|+++
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            553222233455566666666666654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=4.6e-15  Score=106.72  Aligned_cols=150  Identities=26%  Similarity=0.328  Sum_probs=98.7

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   81 (180)
                      ++|++|++.+|.+. .++  .+..+++|+.+++.+|.+.+..  .+..+++|+.++++++.+...  ..+..+..++.+.
T Consensus       219 ~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~l~~l~  291 (384)
T d2omza2         219 TNLDELSLNGNQLK-DIG--TLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNI--SPLAGLTALTNLE  291 (384)
T ss_dssp             TTCCEEECCSSCCC-CCG--GGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEE
T ss_pred             CCCCEEECCCCCCC-Ccc--hhhcccccchhccccCccCCCC--cccccccCCEeeccCcccCCC--Ccccccccccccc
Confidence            45556666665554 222  2233666666666666555222  245566666666666655422  2245566666666


Q ss_pred             eeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCccc
Q 030257           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS  161 (180)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  161 (180)
                      +..+.+..  ...+..+++++.+++++|.+.+..  .+..+++|++|++++|.+++  ++ .+..+++|+.|++++|+++
T Consensus       292 ~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~--l~-~l~~l~~L~~L~l~~N~l~  364 (384)
T d2omza2         292 LNENQLED--ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD--VS-SLANLTNINWLSAGHNQIS  364 (384)
T ss_dssp             CCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC--CG-GGGGCTTCCEEECCSSCCC
T ss_pred             cccccccc--ccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC--Ch-hHcCCCCCCEEECCCCcCC
Confidence            66665542  334667788999999999887642  36788999999999999874  33 5788999999999999998


Q ss_pred             CCCC
Q 030257          162 GPIP  165 (180)
Q Consensus       162 ~~~~  165 (180)
                      +..|
T Consensus       365 ~l~~  368 (384)
T d2omza2         365 DLTP  368 (384)
T ss_dssp             BCGG
T ss_pred             CChh
Confidence            6544

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=4.5e-15  Score=90.57  Aligned_cols=101  Identities=23%  Similarity=0.301  Sum_probs=50.4

Q ss_pred             EEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEEecCCc
Q 030257           31 SLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNF  110 (180)
Q Consensus        31 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~  110 (180)
                      +|++++|+++ ..+ .+..+++|++|++++|.+. ..|..+..+++|+++++++|.++. . +.+..+++|+.+++++|.
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l-~~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-V-DGVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-C-GGGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-c-CccccccccCeEECCCCc
Confidence            4455555544 222 2444555555555555554 233345555555555555555542 2 234555555666665555


Q ss_pred             CCCCc-cccccCCCCCCeEEcccCcCC
Q 030257          111 LTRAI-PSSIFNLSSLSNLDLSVNNLT  136 (180)
Q Consensus       111 ~~~~~-~~~l~~~~~L~~L~l~~~~~~  136 (180)
                      +.+.. ...+..+++|+.+++++|.++
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            54322 134455556666666666554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=3.4e-14  Score=95.49  Aligned_cols=130  Identities=22%  Similarity=0.264  Sum_probs=102.2

Q ss_pred             hcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccE
Q 030257           24 NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEM  103 (180)
Q Consensus        24 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~  103 (180)
                      ..+.+|+.|++.++.+.. + ..+..+++|+++++++|.+....  .+..+++++++++.+|.++.  ...+..+++|+.
T Consensus        38 ~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~--i~~l~~l~~L~~  111 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKN--VSAIAGLQSIKT  111 (227)
T ss_dssp             HHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSC--CGGGTTCTTCCE
T ss_pred             HHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeeccc--cccccccccccccccccccc--cccccccccccc
Confidence            347789999999999884 4 35889999999999999987543  38899999999999998763  345778899999


Q ss_pred             EEecCCcCCCC--------------------ccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccC
Q 030257          104 LWLQNNFLTRA--------------------IPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSG  162 (180)
Q Consensus       104 l~l~~~~~~~~--------------------~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  162 (180)
                      ++++++...+.                    ....+..+++|++|++++|.+.+.   ..+.++++|+.|++++|.+.+
T Consensus       112 l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~---~~l~~l~~L~~L~Ls~n~l~~  187 (227)
T d1h6ua2         112 LDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL---TPLANLSKLTTLKADDNKISD  187 (227)
T ss_dssp             EECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCC
T ss_pred             cccccccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccc---hhhcccccceecccCCCccCC
Confidence            99988765431                    111234567899999999988642   337789999999999999875

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.59  E-value=3.8e-14  Score=101.80  Aligned_cols=145  Identities=24%  Similarity=0.357  Sum_probs=118.9

Q ss_pred             CCCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEE
Q 030257            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (180)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   80 (180)
                      +++|+.+++.+|.+.+ ++.  +..+++|++++++++.+... + .+..++.++.+.+..+.+..  ...+..+++++++
T Consensus       240 l~~L~~L~l~~n~l~~-~~~--~~~~~~L~~L~l~~~~l~~~-~-~~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L  312 (384)
T d2omza2         240 LTNLTDLDLANNQISN-LAP--LSGLTKLTELKLGANQISNI-S-PLAGLTALTNLELNENQLED--ISPISNLKNLTYL  312 (384)
T ss_dssp             CTTCSEEECCSSCCCC-CGG--GTTCTTCSEEECCSSCCCCC-G-GGTTCTTCSEEECCSSCCSC--CGGGGGCTTCSEE
T ss_pred             ccccchhccccCccCC-CCc--ccccccCCEeeccCcccCCC-C-cccccccccccccccccccc--ccccchhcccCeE
Confidence            4789999999999874 432  44589999999999988733 2 36788999999999998864  3457889999999


Q ss_pred             EeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCc
Q 030257           81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQ  159 (180)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~  159 (180)
                      ++++|.++..  ..+..+++|+.|++++|++++ + ..+..+++|++|++++|.+++  ++ .+.++++|+.|++++|.
T Consensus       313 ~ls~n~l~~l--~~l~~l~~L~~L~L~~n~l~~-l-~~l~~l~~L~~L~l~~N~l~~--l~-~l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         313 TLYFNNISDI--SPVSSLTKLQRLFFANNKVSD-V-SSLANLTNINWLSAGHNQISD--LT-PLANLTRITQLGLNDQA  384 (384)
T ss_dssp             ECCSSCCSCC--GGGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCCEEECCSSCCCB--CG-GGTTCTTCSEEECCCEE
T ss_pred             ECCCCCCCCC--cccccCCCCCEEECCCCCCCC-C-hhHcCCCCCCEEECCCCcCCC--Ch-hhccCCCCCEeeCCCCc
Confidence            9999998753  247789999999999999975 3 357889999999999999985  33 37889999999999874

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=3.4e-15  Score=103.75  Aligned_cols=84  Identities=19%  Similarity=0.172  Sum_probs=53.9

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccc-cccc-cchhhhccCCccE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDD-FSGT-IPKEIGNVTKLIR   79 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~-~~~~~~~l~~L~~   79 (180)
                      .+|++|+++++.+.......++.++++|++|++.++.+.+.....+..+++|++|++++|. ++.. .......+++|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            4677788877776654455566667888888888877665555666677777777777753 3211 1122345667777


Q ss_pred             EEeeCC
Q 030257           80 LYLRGN   85 (180)
Q Consensus        80 l~l~~~   85 (180)
                      ++++++
T Consensus       126 L~ls~c  131 (284)
T d2astb2         126 LNLSWC  131 (284)
T ss_dssp             EECCCC
T ss_pred             cccccc
Confidence            777664

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=3.4e-14  Score=96.27  Aligned_cols=167  Identities=18%  Similarity=0.211  Sum_probs=109.4

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCC-CCccccCCCCccEEEecc-cccccccchhhhccCCccE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGK-IPSTLSNCKRLRNISLSL-DDFSGTIPKEIGNVTKLIR   79 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~   79 (180)
                      +++++|++++|.+. .++...+.++++|++|++++|.+... .+.+|..++.++++.+.. +.+....+..+.++++|++
T Consensus        29 ~~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~  107 (242)
T d1xwdc1          29 RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY  107 (242)
T ss_dssp             SCCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCE
T ss_pred             CCCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccc
Confidence            47899999999987 78887778899999999999987643 355678899999998765 4566566677888999999


Q ss_pred             EEeeCCcCCCCcch-hhcCCCc-------------------------ccEEEecCCcCCCCccccccCCCCCCeE-Eccc
Q 030257           80 LYLRGNQLQGEIPE-ELGNLAE-------------------------LEMLWLQNNFLTRAIPSSIFNLSSLSNL-DLSV  132 (180)
Q Consensus        80 l~l~~~~~~~~~~~-~~~~~~~-------------------------L~~l~l~~~~~~~~~~~~l~~~~~L~~L-~l~~  132 (180)
                      +++.++.+....+. ....+..                         ++.+++.+|.++. ++.......++..+ ++.+
T Consensus       108 l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~-i~~~~~~~~~l~~~~~l~~  186 (242)
T d1xwdc1         108 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNCAFNGTQLDELNLSDN  186 (242)
T ss_dssp             EEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTTTTTCCEEEEECTTC
T ss_pred             cccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc-cccccccchhhhccccccc
Confidence            99999876532111 1222222                         3333444444432 22222223344444 3455


Q ss_pred             CcCCCCCCcccccCCCCccEEEccCCcccCCCChhhhhh
Q 030257          133 NNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIPSFILCK  171 (180)
Q Consensus       133 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~  171 (180)
                      |.+++ .....+.++++|+.|++++|.++...+..+..+
T Consensus       187 n~l~~-l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l  224 (242)
T d1xwdc1         187 NNLEE-LPNDVFHGASGPVILDISRTRIHSLPSYGLENL  224 (242)
T ss_dssp             TTCCC-CCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTC
T ss_pred             ccccc-ccHHHhcCCCCCCEEECCCCcCCccCHHHHcCC
Confidence            55652 123457788999999999999985434344443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.4e-13  Score=93.10  Aligned_cols=105  Identities=20%  Similarity=0.220  Sum_probs=83.9

Q ss_pred             eEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccc-cchhhhccCCccEEEee
Q 030257            5 LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGT-IPKEIGNVTKLIRLYLR   83 (180)
Q Consensus         5 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~l~l~   83 (180)
                      +.++.++..++ .+|..+.   +++++|++++|.+....+.+|.++++|+++++++|.+... .+..+..++.++++.+.
T Consensus        11 ~~i~c~~~~l~-~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            56777777776 7887664   4789999999999855566789999999999999987643 44568889999999876


Q ss_pred             C-CcCCCCcchhhcCCCcccEEEecCCcCCC
Q 030257           84 G-NQLQGEIPEELGNLAELEMLWLQNNFLTR  113 (180)
Q Consensus        84 ~-~~~~~~~~~~~~~~~~L~~l~l~~~~~~~  113 (180)
                      . +.+....+..+..+++|+.+++.++.+..
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~  117 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKH  117 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCS
T ss_pred             ccccccccccccccccccccccccchhhhcc
Confidence            5 45665566778899999999999997754

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.44  E-value=2.6e-15  Score=98.94  Aligned_cols=138  Identities=22%  Similarity=0.238  Sum_probs=104.0

Q ss_pred             cCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhc
Q 030257           17 ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELG   96 (180)
Q Consensus        17 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~   96 (180)
                      .++..+ ..+.+|++|++++|.+.. .+ .+..+++|+.|++++|.+.. .+.....+++|+++++.+|.++.  ...+.
T Consensus        39 ~l~~sl-~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~~--l~~~~  112 (198)
T d1m9la_          39 KMDATL-STLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIAS--LSGIE  112 (198)
T ss_dssp             CCHHHH-HHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECCC--HHHHH
T ss_pred             hhhhHH-hcccccceeECcccCCCC-cc-cccCCccccChhhccccccc-ccccccccccccccccccccccc--ccccc
Confidence            344444 459999999999999884 43 57889999999999999874 44545556789999999999874  34567


Q ss_pred             CCCcccEEEecCCcCCCCcc-ccccCCCCCCeEEcccCcCCCCCCc---------ccccCCCCccEEEccCCcccC
Q 030257           97 NLAELEMLWLQNNFLTRAIP-SSIFNLSSLSNLDLSVNNLTGGIIP---------SLLGNQSSLQTLYLSYNQLSG  162 (180)
Q Consensus        97 ~~~~L~~l~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~---------~~~~~~~~L~~l~l~~n~~~~  162 (180)
                      .+++|+.+++++|.+++... ..+..+++|+.|++++|.+......         ..+..+++|+.||  +.+++.
T Consensus       113 ~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~~  186 (198)
T d1m9la_         113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGGTT
T ss_pred             ccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--CccCCH
Confidence            78899999999999975322 4678899999999999976521000         1256788999986  556653

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.42  E-value=2.7e-15  Score=98.86  Aligned_cols=133  Identities=25%  Similarity=0.262  Sum_probs=96.3

Q ss_pred             CCccEEEcccc--cCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEE
Q 030257           27 SNLESLFLKNN--MFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEML  104 (180)
Q Consensus        27 ~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l  104 (180)
                      ...+.+.+.+.  .+. ..+.++..+++|++|++++|.+...  +.+..+++|++|++++|.+.. .+.....+++|+.+
T Consensus        23 ~~~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~i--~~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L   98 (198)
T d1m9la_          23 TEAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIKK-IENLDAVADTLEEL   98 (198)
T ss_dssp             TTCSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESCC--CCHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEE
T ss_pred             cccceeeeecccCchh-hhhhHHhcccccceeECcccCCCCc--ccccCCccccChhhccccccc-cccccccccccccc
Confidence            34555666554  222 4556788889999999999988744  347888999999999998873 34444445679999


Q ss_pred             EecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCcccCCCC
Q 030257          105 WLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLSGPIP  165 (180)
Q Consensus       105 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  165 (180)
                      ++++|.++. + ..+..+++|+.|++++|.+++......+..+++|+.|++++|++....+
T Consensus        99 ~l~~N~i~~-l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  157 (198)
T d1m9la_          99 WISYNQIAS-L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK  157 (198)
T ss_dssp             ECSEEECCC-H-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHC
T ss_pred             ccccccccc-c-ccccccccccccccccchhccccccccccCCCccceeecCCCccccCcc
Confidence            999998874 2 3466788899999999988742111357788899999999998765443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.2e-12  Score=81.53  Aligned_cols=107  Identities=18%  Similarity=0.095  Sum_probs=80.1

Q ss_pred             CccEEEcccccCCCCCCccccCCCCccEEEeccc-ccccccchhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEEe
Q 030257           28 NLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLD-DFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWL  106 (180)
Q Consensus        28 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l  106 (180)
                      ..+.++..++... ..|..+..+++++.|++.++ .++...++.|.++++|+.|++++|.++...+.++..+++|+.|++
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            3455667776665 45666777888888888765 477666677888888999999888888666777888888899999


Q ss_pred             cCCcCCCCccccccCCCCCCeEEcccCcCC
Q 030257          107 QNNFLTRAIPSSIFNLSSLSNLDLSVNNLT  136 (180)
Q Consensus       107 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  136 (180)
                      ++|.+....+..+. ..+++.|++++|.+.
T Consensus        88 s~N~l~~l~~~~~~-~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          88 SFNALESLSWKTVQ-GLSLQELVLSGNPLH  116 (156)
T ss_dssp             CSSCCSCCCSTTTC-SCCCCEEECCSSCCC
T ss_pred             cCCCCcccChhhhc-cccccccccCCCccc
Confidence            88888744344444 346888888888764

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.3e-13  Score=93.53  Aligned_cols=156  Identities=23%  Similarity=0.251  Sum_probs=110.6

Q ss_pred             CCCceEEEeeCCeecccCchhhhhcCCCccEEEccccc-CCCC-CCccccCCCCccEEEeccccc-ccc-cchhhhc-cC
Q 030257            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNM-FHGK-IPSTLSNCKRLRNISLSLDDF-SGT-IPKEIGN-VT   75 (180)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~-~~~~~~~l~~L~~L~l~~~~~-~~~-~~~~~~~-l~   75 (180)
                      |++|++|++.++.+.+..+..+. .+++|++|++++|. +++. .......+++|++|++++|.. ... ....+.. .+
T Consensus        70 c~~L~~L~L~~~~l~~~~~~~l~-~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~  148 (284)
T d2astb2          70 CSKLQNLSLEGLRLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE  148 (284)
T ss_dssp             BCCCSEEECTTCBCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCT
T ss_pred             CCCcccccccccCCCcHHHHHHh-cCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhccccc
Confidence            57899999999988755555554 48999999999864 4322 112235689999999998753 211 1122333 47


Q ss_pred             CccEEEeeCCc--CCCC-cchhhcCCCcccEEEecCCc-CCCCccccccCCCCCCeEEcccC-cCCCCCCcccccCCCCc
Q 030257           76 KLIRLYLRGNQ--LQGE-IPEELGNLAELEMLWLQNNF-LTRAIPSSIFNLSSLSNLDLSVN-NLTGGIIPSLLGNQSSL  150 (180)
Q Consensus        76 ~L~~l~l~~~~--~~~~-~~~~~~~~~~L~~l~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L  150 (180)
                      +|+.+++.++.  ++.. .......+++|+.|++++|. +++.....+..+++|++|++++| .+++. ....+.++++|
T Consensus       149 ~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~-~l~~L~~~~~L  227 (284)
T d2astb2         149 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE-TLLELGEIPTL  227 (284)
T ss_dssp             TCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGG-GGGGGGGCTTC
T ss_pred             ccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChH-HHHHHhcCCCC
Confidence            89999998753  3322 22234568999999998864 66666677788999999999997 57654 33456788999


Q ss_pred             cEEEccCC
Q 030257          151 QTLYLSYN  158 (180)
Q Consensus       151 ~~l~l~~n  158 (180)
                      +.|+++++
T Consensus       228 ~~L~l~~~  235 (284)
T d2astb2         228 KTLQVFGI  235 (284)
T ss_dssp             CEEECTTS
T ss_pred             CEEeeeCC
Confidence            99999988

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=9.4e-13  Score=83.24  Aligned_cols=106  Identities=21%  Similarity=0.217  Sum_probs=74.8

Q ss_pred             ceEEEeeCCeecccCchhhhhcCCCccEEEccccc-CCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEEe
Q 030257            4 LLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNM-FHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL   82 (180)
Q Consensus         4 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l   82 (180)
                      .+.++..++... .+|..+.. +++|++|++.+++ +....+.+|.++++|+.|++++|.+....+..|..+++|++|++
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~-l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPG-AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCS-CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCeEEecCCCCc-cCcccccC-ccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            345666666665 45555543 7788888886653 66555667788888888888888888777777888888888888


Q ss_pred             eCCcCCCCcchhhcCCCcccEEEecCCcCC
Q 030257           83 RGNQLQGEIPEELGNLAELEMLWLQNNFLT  112 (180)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~  112 (180)
                      ++|.+....+..+.. .+++.+++++|++.
T Consensus        88 s~N~l~~l~~~~~~~-~~l~~L~L~~Np~~  116 (156)
T d2ifga3          88 SFNALESLSWKTVQG-LSLQELVLSGNPLH  116 (156)
T ss_dssp             CSSCCSCCCSTTTCS-CCCCEEECCSSCCC
T ss_pred             cCCCCcccChhhhcc-ccccccccCCCccc
Confidence            888877444444443 36888888888773

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.15  E-value=5.7e-12  Score=89.41  Aligned_cols=113  Identities=17%  Similarity=0.199  Sum_probs=57.8

Q ss_pred             CCCCccEEEecccccccc-----cchhhhccCCccEEEeeCCcCCCC----cchhhcCCCcccEEEecCCcCCCCcc---
Q 030257           49 NCKRLRNISLSLDDFSGT-----IPKEIGNVTKLIRLYLRGNQLQGE----IPEELGNLAELEMLWLQNNFLTRAIP---  116 (180)
Q Consensus        49 ~l~~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~---  116 (180)
                      .++.++.+++++|.+...     ....+..+++|++|++++|.+...    ....+..+++|+.|++++|.+.+...   
T Consensus       184 ~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l  263 (344)
T d2ca6a1         184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV  263 (344)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred             hhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHH
Confidence            345566666666655421     122344556666666666654322    12334455666666666666654222   


Q ss_pred             -cccc--CCCCCCeEEcccCcCCCCC---Ccccc-cCCCCccEEEccCCccc
Q 030257          117 -SSIF--NLSSLSNLDLSVNNLTGGI---IPSLL-GNQSSLQTLYLSYNQLS  161 (180)
Q Consensus       117 -~~l~--~~~~L~~L~l~~~~~~~~~---~~~~~-~~~~~L~~l~l~~n~~~  161 (180)
                       +.+.  ..+.|++|++++|.+.+..   +...+ .+.++|+.|++++|.+.
T Consensus       264 ~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         264 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence             1222  2245666666666664321   11122 13556677777777665

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.14  E-value=6.2e-12  Score=89.21  Aligned_cols=115  Identities=23%  Similarity=0.248  Sum_probs=66.7

Q ss_pred             CCCccEEEecccccccc----cchhhhccCCccEEEeeCCcCCCC-----cchhhcCCCcccEEEecCCcCCCC----cc
Q 030257           50 CKRLRNISLSLDDFSGT----IPKEIGNVTKLIRLYLRGNQLQGE-----IPEELGNLAELEMLWLQNNFLTRA----IP  116 (180)
Q Consensus        50 l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~l~l~~~~~~~~-----~~~~~~~~~~L~~l~l~~~~~~~~----~~  116 (180)
                      .+.++.+.+.++.+...    ....+.....++++++.+|.+...     ....+..+++|+.|++++|.++..    +.
T Consensus       157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~  236 (344)
T d2ca6a1         157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA  236 (344)
T ss_dssp             CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred             Ccccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccc
Confidence            34555555555554321    222344566777787777776532     122345567788888887776432    22


Q ss_pred             ccccCCCCCCeEEcccCcCCCCCCc---ccccC--CCCccEEEccCCcccCCC
Q 030257          117 SSIFNLSSLSNLDLSVNNLTGGIIP---SLLGN--QSSLQTLYLSYNQLSGPI  164 (180)
Q Consensus       117 ~~l~~~~~L~~L~l~~~~~~~~~~~---~~~~~--~~~L~~l~l~~n~~~~~~  164 (180)
                      ..+...++|++|++++|.+.+....   ..+..  .+.|+.|++++|.+...-
T Consensus       237 ~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~  289 (344)
T d2ca6a1         237 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA  289 (344)
T ss_dssp             HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHH
T ss_pred             ccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHH
Confidence            3456677788888888877642111   12222  356788888888776443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.99  E-value=1.3e-08  Score=71.43  Aligned_cols=136  Identities=26%  Similarity=0.327  Sum_probs=91.6

Q ss_pred             CceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhcc-CCccEEE
Q 030257            3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNV-TKLIRLY   81 (180)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~l~   81 (180)
                      ++++|+++++.++ .+|.    ..++|++|++++|++. .+|..   ..+|+.|++.++++... +    .+ +.|++|+
T Consensus        39 ~l~~LdLs~~~L~-~lp~----~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~l-~----~lp~~L~~L~  104 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPE----LPPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKAL-S----DLPPLLEYLG  104 (353)
T ss_dssp             TCSEEECTTSCCS-CCCS----CCTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSCC-C----SCCTTCCEEE
T ss_pred             CCCEEEeCCCCCC-CCCC----CCCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccchh-h----hhcccccccc
Confidence            5789999999887 6774    2578999999999888 55654   45788999999887632 2    23 4689999


Q ss_pred             eeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCcccccCCCCccEEEccCCccc
Q 030257           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIPSLLGNQSSLQTLYLSYNQLS  161 (180)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  161 (180)
                      +++|.+.. .|. +..+++|+.+++.++.+... +..   ...+..+.+..+...+   ...+..++.++.++++.|...
T Consensus       105 L~~n~l~~-lp~-~~~l~~L~~L~l~~~~~~~~-~~~---~~~l~~l~~~~~~~~~---~~~l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         105 VSNNQLEK-LPE-LQNSSFLKIIDVDNNSLKKL-PDL---PPSLEFIAAGNNQLEE---LPELQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             CCSSCCSS-CCC-CTTCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSS---CCCCTTCTTCCEEECCSSCCS
T ss_pred             cccccccc-ccc-hhhhccceeecccccccccc-ccc---cccccchhhccccccc---cccccccccceeccccccccc
Confidence            99998873 443 56788999999988877532 221   2344555555444331   223444556666666665544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.4e-11  Score=89.90  Aligned_cols=169  Identities=18%  Similarity=0.158  Sum_probs=91.2

Q ss_pred             CceEEEeeCCeecccCch---hhhhcCCCccEEEcccccCCCCCCcc-----ccCCCCccEEEecccccccccch----h
Q 030257            3 SLLSIRFTNNTLFGELPP---NFCNHLSNLESLFLKNNMFHGKIPST-----LSNCKRLRNISLSLDDFSGTIPK----E   70 (180)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~-----~~~l~~L~~L~l~~~~~~~~~~~----~   70 (180)
                      .++.+++.+|.+......   ......+.++.+++++|.+.+.....     ......|+.+++.++.+......    .
T Consensus       256 ~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~  335 (460)
T d1z7xw1         256 RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV  335 (460)
T ss_dssp             CCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccc
Confidence            455666666554422111   11223556666666666554211111     12345677777777766533222    2


Q ss_pred             hhccCCccEEEeeCCcCCCCc----chhhc-CCCcccEEEecCCcCCCC----ccccccCCCCCCeEEcccCcCCCCCCc
Q 030257           71 IGNVTKLIRLYLRGNQLQGEI----PEELG-NLAELEMLWLQNNFLTRA----IPSSIFNLSSLSNLDLSVNNLTGGIIP  141 (180)
Q Consensus        71 ~~~l~~L~~l~l~~~~~~~~~----~~~~~-~~~~L~~l~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~  141 (180)
                      +....+|++|++++|.+....    ...+. ..+.|+.|++++|.+++.    +.+.+...++|++|++++|.+++....
T Consensus       336 ~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~  415 (460)
T d1z7xw1         336 LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGIL  415 (460)
T ss_dssp             HHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHH
T ss_pred             cccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHH
Confidence            334567788888777764321    22222 345677888888777642    223445567788888888877643211


Q ss_pred             ---cccc-CCCCccEEEccCCcccCCCChhhhhh
Q 030257          142 ---SLLG-NQSSLQTLYLSYNQLSGPIPSFILCK  171 (180)
Q Consensus       142 ---~~~~-~~~~L~~l~l~~n~~~~~~~~~~~~~  171 (180)
                         ..+. ....|+.+++.++.+.....+.+...
T Consensus       416 ~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l  449 (460)
T d1z7xw1         416 QLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL  449 (460)
T ss_dssp             HHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHH
T ss_pred             HHHHHHHhCCCccCEEECCCCCCCHHHHHHHHHH
Confidence               1222 23367788888777765555544333

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=1.3e-09  Score=79.25  Aligned_cols=111  Identities=19%  Similarity=0.202  Sum_probs=82.7

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCC----CCccccCCCCccEEEecccccccccchhhh-----
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGK----IPSTLSNCKRLRNISLSLDDFSGTIPKEIG-----   72 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----   72 (180)
                      ++|++|+++++++++..-..++..++++++|++.+|.+...    +..++..+++|++|++++|.+.......+.     
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            46899999999987544455666789999999999987732    344567889999999999987532222222     


Q ss_pred             ccCCccEEEeeCCcCCCC----cchhhcCCCcccEEEecCCcCC
Q 030257           73 NVTKLIRLYLRGNQLQGE----IPEELGNLAELEMLWLQNNFLT  112 (180)
Q Consensus        73 ~l~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~  112 (180)
                      ...+|++|++.+|.++..    .+..+..+++|+.+++++|.+.
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            235799999999988644    2345677899999999998764

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.74  E-value=3.9e-07  Score=63.70  Aligned_cols=76  Identities=25%  Similarity=0.334  Sum_probs=58.0

Q ss_pred             CCceEEEeeCCeecccCchhhhhcCCCccEEEcccccCCCCCCccccCCCCccEEEecccccccccchhhhccCCccEEE
Q 030257            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (180)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   81 (180)
                      ++|++|++++|.++ .+|..    +.+|+.|++.++.+. .++..   .+.|++|++++|.+.. .|. +..+++|++++
T Consensus        58 ~~L~~L~Ls~N~l~-~lp~~----~~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L~~n~l~~-lp~-~~~l~~L~~L~  126 (353)
T d1jl5a_          58 PHLESLVASCNSLT-ELPEL----PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGVSNNQLEK-LPE-LQNSSFLKIID  126 (353)
T ss_dssp             TTCSEEECCSSCCS-SCCCC----CTTCCEEECCSSCCS-CCCSC---CTTCCEEECCSSCCSS-CCC-CTTCTTCCEEE
T ss_pred             CCCCEEECCCCCCc-ccccc----hhhhhhhhhhhcccc-hhhhh---cccccccccccccccc-ccc-hhhhccceeec
Confidence            68999999999987 67743    467899999999876 33221   2469999999998874 343 56789999999


Q ss_pred             eeCCcCC
Q 030257           82 LRGNQLQ   88 (180)
Q Consensus        82 l~~~~~~   88 (180)
                      +.++.+.
T Consensus       127 l~~~~~~  133 (353)
T d1jl5a_         127 VDNNSLK  133 (353)
T ss_dssp             CCSSCCS
T ss_pred             ccccccc
Confidence            9887654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=3.6e-09  Score=66.82  Aligned_cols=89  Identities=21%  Similarity=0.141  Sum_probs=61.4

Q ss_pred             ccchhhhccCCccEEEeeCCcCCCCc--chhhcCCCcccEEEecCCcCCCCccccccCCCCCCeEEcccCcCCCCCCc--
Q 030257           66 TIPKEIGNVTKLIRLYLRGNQLQGEI--PEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGGIIP--  141 (180)
Q Consensus        66 ~~~~~~~~l~~L~~l~l~~~~~~~~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--  141 (180)
                      ........+++|++|++++|.++...  +..+..+++|+.+++++|.+.....-......+|+.+++++|.+.+....  
T Consensus        56 ~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~  135 (162)
T d1koha1          56 TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQS  135 (162)
T ss_dssp             HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHH
T ss_pred             hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccch
Confidence            33444567889999999999887542  34566788999999999998753332333455788999999988643111  


Q ss_pred             ----ccccCCCCccEEE
Q 030257          142 ----SLLGNQSSLQTLY  154 (180)
Q Consensus       142 ----~~~~~~~~L~~l~  154 (180)
                          ..+..+++|+.||
T Consensus       136 ~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         136 TYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHHTTSTTCCEET
T ss_pred             hHHHHHHHHCCCCCEEC
Confidence                2356678888875

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=4.2e-08  Score=61.81  Aligned_cols=83  Identities=25%  Similarity=0.257  Sum_probs=59.3

Q ss_pred             ccCCCCccEEEeccccccccc--chhhhccCCccEEEeeCCcCCCCcchhhcCCCcccEEEecCCcCCCCccc-------
Q 030257           47 LSNCKRLRNISLSLDDFSGTI--PKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPS-------  117 (180)
Q Consensus        47 ~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-------  117 (180)
                      +..++.|++|++++|+++...  +..+..+++|+.|++++|.+.....-......+++.+++.+|++......       
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            356788888889888887542  34567788999999999988754332333445788899999988754332       


Q ss_pred             cccCCCCCCeEE
Q 030257          118 SIFNLSSLSNLD  129 (180)
Q Consensus       118 ~l~~~~~L~~L~  129 (180)
                      .+..+|+|+.||
T Consensus       141 i~~~~P~L~~LD  152 (162)
T d1koha1         141 IRERFPKLLRLD  152 (162)
T ss_dssp             HHTTSTTCCEET
T ss_pred             HHHHCCCCCEEC
Confidence            355788888875

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.33  E-value=3.7e-07  Score=57.64  Aligned_cols=66  Identities=18%  Similarity=0.200  Sum_probs=31.6

Q ss_pred             hhcCCCccEEEcccc-cCCCC----CCccccCCCCccEEEecccccccc----cchhhhccCCccEEEeeCCcCC
Q 030257           23 CNHLSNLESLFLKNN-MFHGK----IPSTLSNCKRLRNISLSLDDFSGT----IPKEIGNVTKLIRLYLRGNQLQ   88 (180)
Q Consensus        23 ~~~l~~L~~L~l~~~-~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~l~l~~~~~~   88 (180)
                      ..+.+.|++|+++++ .+...    +..++...+.|+.|++++|.+...    ....+...+.|++|++++|.+.
T Consensus        11 ~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~   85 (167)
T d1pgva_          11 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT   85 (167)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             HhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence            344567777777653 34321    222344455566666666655421    1122333444555555555443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.21  E-value=5.9e-07  Score=56.65  Aligned_cols=113  Identities=14%  Similarity=0.183  Sum_probs=79.2

Q ss_pred             cCCCCccEEEeccc-ccccc----cchhhhccCCccEEEeeCCcCCCC----cchhhcCCCcccEEEecCCcCCCCc---
Q 030257           48 SNCKRLRNISLSLD-DFSGT----IPKEIGNVTKLIRLYLRGNQLQGE----IPEELGNLAELEMLWLQNNFLTRAI---  115 (180)
Q Consensus        48 ~~l~~L~~L~l~~~-~~~~~----~~~~~~~l~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~---  115 (180)
                      .+.+.|+.|+++++ .+...    ....+...++|++|++++|.+...    ....+...+.|+.|++++|.+.+..   
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            34688999999875 45422    233466678899999999987632    2234556688999999999987532   


Q ss_pred             -cccccCCCCCCeEEcccCcCCCC------CCcccccCCCCccEEEccCCcc
Q 030257          116 -PSSIFNLSSLSNLDLSVNNLTGG------IIPSLLGNQSSLQTLYLSYNQL  160 (180)
Q Consensus       116 -~~~l~~~~~L~~L~l~~~~~~~~------~~~~~~~~~~~L~~l~l~~n~~  160 (180)
                       ...+...++|++|++++|.....      .+...+...++|+.|+++.+..
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence             23566778899999998865421      1334566778999999877643

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.85  E-value=3e-06  Score=53.22  Aligned_cols=45  Identities=16%  Similarity=0.097  Sum_probs=23.8

Q ss_pred             hhhhhcCCCccEEEcccc-cCCCC----CCccccCCCCccEEEecccccc
Q 030257           20 PNFCNHLSNLESLFLKNN-MFHGK----IPSTLSNCKRLRNISLSLDDFS   64 (180)
Q Consensus        20 ~~~~~~l~~L~~L~l~~~-~~~~~----~~~~~~~l~~L~~L~l~~~~~~   64 (180)
                      ..+..+.+.|++|++.++ .+...    +..++...++|+.|++++|.+.
T Consensus        10 ~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~   59 (166)
T d1io0a_          10 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN   59 (166)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred             HHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCccc
Confidence            334445677777777763 34311    2233345556666666666554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.81  E-value=2.9e-06  Score=53.28  Aligned_cols=113  Identities=17%  Similarity=0.246  Sum_probs=79.0

Q ss_pred             cCCCCccEEEecc-cccccc----cchhhhccCCccEEEeeCCcCCCCcc----hhhcCCCcccEEEecCCcCCCC----
Q 030257           48 SNCKRLRNISLSL-DDFSGT----IPKEIGNVTKLIRLYLRGNQLQGEIP----EELGNLAELEMLWLQNNFLTRA----  114 (180)
Q Consensus        48 ~~l~~L~~L~l~~-~~~~~~----~~~~~~~l~~L~~l~l~~~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~----  114 (180)
                      .+.+.|+.+++++ +.+...    ....+...++|++|++++|.+.....    ..+...++++.++++++.+.+.    
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            4568999999987 455422    33345678899999999998764422    3445668899999999988653    


Q ss_pred             ccccccCCCCCCeEEcc--cCcCCCC---CCcccccCCCCccEEEccCCcc
Q 030257          115 IPSSIFNLSSLSNLDLS--VNNLTGG---IIPSLLGNQSSLQTLYLSYNQL  160 (180)
Q Consensus       115 ~~~~l~~~~~L~~L~l~--~~~~~~~---~~~~~~~~~~~L~~l~l~~n~~  160 (180)
                      +...+...++|+.+++.  +|.+.+.   .+...+..++.|+.|++..+..
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            23456677889886664  5556532   2334566789999999987654