Citrus Sinensis ID: 030263

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180
Protein Sequence
MLIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTANFTLCYGVCQIGVIGQKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTRCDLYGQISAFEGAPVEFDQSSVPVRKDRTIGPAEELAFETC
Secondary Structure (PSIPRED)
cEEEccccccHHcccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHccccHHHHHHHHHHHHccccccHHHccccHHHHHHHcccccccHHHHHHHHHHHHHccEEEEEEccccEEEEccccccccccccccccccccccccccccHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cEEEccccccHHHcccccccccccccEEEEcccccHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEccccccHHHHHHHHHHccHHHcHHHcccccHHHHHHHHccccccHHHHHHHHHHHcccEEEEEEEcccEEEEccccccccccccccccccccccccccEccHHHHHHccc
Coil and Loop (DISEMBL)
mliydglhydalaispfegapeefdqtifpvqkgrtigpaEDLALKLVKEQQRkktytdtanfTLCYGVCQIGVIGQKAIAATVasdtvkhseafigksnqdycswiqdpekwggaIELSILADYygseiaaydiqttrcdlygqisafegapvefdqssvpvrkdrtigpaeelafetc
Flexible Loop (DISEMBL)
MLIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTANFTLCYGVCQIGVIGQKAIAATVASDTVKHSEafigksnqdyCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTRCDLYGQISAFEGapvefdqssvpvrkdrtigpaeelafetc
Low Complexity Region (SEG)
MLIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTANFTLCYGVCQIGVIGQKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTRCDLYGQISAFEGAPVEFDQSSVPVRKDRTIGPAEELAFETC
Disordered region (IsUnstruct)
*LIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTANFTLCYGVCQIGVIGQKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTRCDLYGQISAFEGAPV**************************
Disordered Region (DISOPRED)
MLIYDGLHYDALA************************************EQQRKKTYTDTANFTLCYGVCQIGVIGQKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTRCDLYGQISAFEGAPVEFDQSSVPVRKDRTIGPAEELAFETC
Disordered Region (DISEMBL)
MLIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTANFTLCYGVCQIGVIGQKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTRCDLYGQISAFEGAPVEFDQSSVPVRKDRTIGPAEELAFETC
Disordered Region (DISPRO)
MLIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTANFTLCYGVCQIGVIGQKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTRCDLYGQISAFEGAPVEFDQSSVPVRKDRTIGPAEELAFETC
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTANFTLCYGVCQIGVIGQKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTRCDLYGQISAFEGAPVEFDQSSVPVRKDRTIGPAEELAFETC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	180	2.2.26 [Sep-21-2011]
Q8CB27	343	Ubiquitin thioesterase OT	yes	no	0.483	0.253	0.446	4e-16
Q55BI3	325	Ubiquitin thioesterase OT	yes	no	0.338	0.187	0.560	6e-16
Q29FC9	358	Ubiquitin thioesterase OT	yes	no	0.516	0.259	0.418	1e-15
Q5VVQ6	348	Ubiquitin thioesterase OT	yes	no	0.483	0.25	0.436	5e-15
Q32Q05	343	Ubiquitin thioesterase OT	no	no	0.483	0.253	0.425	1e-14
Q567B1	301	Ubiquitin thioesterase OT	yes	no	0.694	0.415	0.355	1e-14
Q05B57	348	Ubiquitin thioesterase OT	yes	no	0.483	0.25	0.425	2e-14
Q0IH43	304	Ubiquitin thioesterase OT	N/A	no	0.483	0.286	0.436	3e-14
Q5F3A6	302	Ubiquitin thioesterase OT	yes	no	0.483	0.288	0.425	5e-14
Q9VRJ9	347	Ubiquitin thioesterase OT	yes	no	0.35	0.181	0.485	8e-14

>sp|Q8CB27|OTU1_MOUSE Ubiquitin thioesterase OTU1 OS=Mus musculus GN=Yod1 PE=1 SV=1

 Score = 84.3 bits (207), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 42/94 (44%), Positives = 59/94 (62%), Gaps = 7/94 (7%)

Query: 63  FTLCYGVCQIGVIG-------QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGG 115
           FT  Y V + GV+        ++ IA  VASD V +SEA +GK+N+DYC WI+  + WGG
Sbjct: 157 FTSVYYVVEGGVLNPACAPEMRRLIAQIVASDPVLYSEAILGKTNEDYCDWIRRDDTWGG 216

Query: 116 AIELSILADYYGSEIAAYDIQTTRCDLYGQISAF 149
           AIE+SIL+ +Y  EI   D QT R D +G+ + +
Sbjct: 217 AIEISILSKFYQCEICVVDTQTVRIDRFGEDAGY 250

Hydrolase that can remove conjugated ubiquitin from proteins and participates in endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by triming the ubiquitin chain on the associated substrate to facilitate their threading through the VCP/p97 pore. Ubiquitin moieties on substrates may present a steric impediment to the threading process when the substrate is transferred to the VCP pore and threaded through VCP's axial channel. Mediates deubiquitination of both 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Able to cleave both polyubiquitin and di-ubiquitin.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2

>sp|Q55BI3|OTU1_DICDI Ubiquitin thioesterase OTU1 OS=Dictyostelium discoideum GN=yod1 PE=3 SV=1

 Score = 84.0 bits (206), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 37/66 (56%), Positives = 50/66 (75%)

Query: 80  IAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTR 139
           IA  V SD  +++EA +GKSN+ YC+WIQ+P+ WGGAIELSIL+++Y  EIAA+DI T  
Sbjct: 158 IAQNVKSDPFEYNEAVLGKSNEGYCNWIQNPKNWGGAIELSILSNHYKVEIAAFDISTQL 217

Query: 140 CDLYGQ 145
              YG+
Sbjct: 218 MYCYGE 223

Hydrolase that can remove conjugated ubiquitin from proteins and may therefore play an important regulatory role at the level of protein turnover by preventing degradation.

Dictyostelium discoideum (taxid: 44689)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q29FC9|OTU1_DROPS Ubiquitin thioesterase OTU1 OS=Drosophila pseudoobscura pseudoobscura GN=GA18292 PE=3 SV=1

 Score = 82.8 bits (203), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 65/110 (59%), Gaps = 17/110 (15%)

Query: 80  IAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTR 139
           IA  V++DT ++++A +GKSN DYC+WIQ  + WGGAIE+SIL++YYG EI   DIQ   
Sbjct: 197 IAQEVSADTQQYNDAVLGKSNSDYCAWIQKADSWGGAIEVSILSNYYGIEIDVVDIQNAI 256

Query: 140 CDLYGQ--------ISAFEGAP-----VEFDQSSVPVRKDRTIGPAEELA 176
            + +G+           F+G       +E  Q+SVP     TI P EE+ 
Sbjct: 257 INRFGEDKNFGLRVFLLFDGIHYDPLYMETQQNSVPA----TIFPVEEMG 302

Hydrolase that can remove conjugated ubiquitin from proteins and may therefore play an important regulatory role at the level of protein turnover by preventing degradation.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q5VVQ6|OTU1_HUMAN Ubiquitin thioesterase OTU1 OS=Homo sapiens GN=YOD1 PE=1 SV=1

 Score = 80.9 bits (198), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 41/94 (43%), Positives = 58/94 (61%), Gaps = 7/94 (7%)

Query: 63  FTLCYGVCQIGVIG-------QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGG 115
           FT  Y V + GV+        ++ IA  VASD   +SEA +GK+NQ+YC WI+  + WGG
Sbjct: 162 FTSVYYVVEGGVLNPACAPEMRRLIAQIVASDPDFYSEAILGKTNQEYCDWIKRDDTWGG 221

Query: 116 AIELSILADYYGSEIAAYDIQTTRCDLYGQISAF 149
           AIE+SIL+ +Y  EI   D QT R D +G+ + +
Sbjct: 222 AIEISILSKFYQCEICVVDTQTVRIDRFGEDAGY 255

Hydrolase that can remove conjugated ubiquitin from proteins and participates in endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by triming the ubiquitin chain on the associated substrate to facilitate their threading through the VCP/p97 pore. Ubiquitin moieties on substrates may present a steric impediment to the threading process when the substrate is transferred to the VCP pore and threaded through VCP's axial channel. Mediates deubiquitination of both 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Able to cleave both polyubiquitin and di-ubiquitin.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q32Q05|OTU1_RAT Ubiquitin thioesterase OTU1 OS=Rattus norvegicus GN=Yod1 PE=2 SV=1

 Score = 79.7 bits (195), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/94 (42%), Positives = 58/94 (61%), Gaps = 7/94 (7%)

Query: 63  FTLCYGVCQIGVIG-------QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGG 115
           FT  Y V + GV+        ++ IA  VASD   +SEA +GK+N++YC WI+  + WGG
Sbjct: 157 FTSVYYVVEGGVLNPACAPEMRRLIAQIVASDPDLYSEAILGKTNEEYCDWIRRDDTWGG 216

Query: 116 AIELSILADYYGSEIAAYDIQTTRCDLYGQISAF 149
           AIE+SIL+ +Y  EI   D QT R D +G+ + +
Sbjct: 217 AIEISILSKFYQCEICVVDTQTVRIDRFGEDAGY 250

Hydrolase that can remove conjugated ubiquitin from proteins and participates in endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by triming the ubiquitin chain on the associated substrate to facilitate their threading through the VCP/p97 pore. Ubiquitin moieties on substrates may present a steric impediment to the threading process when the substrate is transferred to the VCP pore and threaded through VCP's axial channel. Mediates deubiquitination of both 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Able to cleave both polyubiquitin and di-ubiquitin.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q567B1|OTU1_DANRE Ubiquitin thioesterase OTU1 OS=Danio rerio GN=yod1 PE=2 SV=1

 Score = 79.3 bits (194), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 75/135 (55%), Gaps = 10/135 (7%)

Query: 22  EEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTANFTLCYGVCQIGVIG----- 76
           EE ++   PVQ   T GP+ ++   +   ++R     ++  FT    V + GV       
Sbjct: 77  EEKNKPKPPVQPTVTKGPSFEVTPVV---ERRVVPADNSCLFTSVNYVMEGGVYDPACAS 133

Query: 77  --QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYD 134
             +  IA  VASD   +SEA +GK+N++YC+WI+  + WGGAIE+SIL+ +Y  EI   D
Sbjct: 134 EMRGLIAQIVASDPTAYSEAVLGKTNEEYCTWIRRDDTWGGAIEVSILSKFYQCEICVVD 193

Query: 135 IQTTRCDLYGQISAF 149
            QT R D +G+ + +
Sbjct: 194 TQTVRVDRFGEDAGY 208

Hydrolase that can remove conjugated ubiquitin from proteins and participates in endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by triming the ubiquitin chain on the associated substrate to facilitate their threading through the VCP/p97 pore. Ubiquitin moieties on substrates may present a steric impediment to the threading process when the substrate is transferred to the VCP pore and threaded through VCP's axial channel.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q05B57|OTU1_BOVIN Ubiquitin thioesterase OTU1 OS=Bos taurus GN=YOD1 PE=2 SV=1

 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/94 (42%), Positives = 58/94 (61%), Gaps = 7/94 (7%)

Query: 63  FTLCYGVCQIGVIG-------QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGG 115
           FT  Y V + GV+        ++ IA  VASD   +SEA +GK+N++YC WI+  + WGG
Sbjct: 162 FTSVYYVVEGGVLNPACAPEMRRFIAQIVASDPDFYSEAILGKTNEEYCDWIKRDDTWGG 221

Query: 116 AIELSILADYYGSEIAAYDIQTTRCDLYGQISAF 149
           AIE+SIL+ +Y  EI   D QT R D +G+ + +
Sbjct: 222 AIEISILSKFYQCEICVVDTQTVRIDRFGEDAGY 255

Hydrolase that can remove conjugated ubiquitin from proteins and participates in endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by triming the ubiquitin chain on the associated substrate to facilitate their threading through the VCP/p97 pore. Ubiquitin moieties on substrates may present a steric impediment to the threading process when the substrate is transferred to the VCP pore and threaded through VCP's axial channel. Mediates deubiquitination of both 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Able to cleave both polyubiquitin and di-ubiquitin.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q0IH43|OTU1_XENLA Ubiquitin thioesterase OTU1 OS=Xenopus laevis GN=yod1 PE=2 SV=1

 Score = 78.2 bits (191), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/94 (43%), Positives = 56/94 (59%), Gaps = 7/94 (7%)

Query: 63  FTLCYGVCQIGVIG-------QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGG 115
           FT  Y V + GV         +  IA  VASD   + +A +GKSN++YCSWI+  + WGG
Sbjct: 118 FTSIYYVVEGGVYDPACALEMRSLIAEIVASDQSAYCDAVLGKSNEEYCSWIRREDTWGG 177

Query: 116 AIELSILADYYGSEIAAYDIQTTRCDLYGQISAF 149
           AIE+SIL+ +Y  EI   D QT R D +G+ S +
Sbjct: 178 AIEVSILSKFYQCEICVVDTQTVRIDRFGEDSGY 211

Hydrolase that can remove conjugated ubiquitin from proteins and participates in endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by triming the ubiquitin chain on the associated substrate to facilitate their threading through the VCP/p97 pore. Ubiquitin moieties on substrates may present a steric impediment to the threading process when the substrate is transferred to the VCP pore and threaded through VCP's axial channel.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q5F3A6|OTU1_CHICK Ubiquitin thioesterase OTU1 OS=Gallus gallus GN=YOD1 PE=2 SV=1

 Score = 77.4 bits (189), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 40/94 (42%), Positives = 55/94 (58%), Gaps = 7/94 (7%)

Query: 63  FTLCYGVCQIGVIG-------QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGG 115
           FT  Y V + GV         +  IA  VASD   + EA +GK+N++YC WI+  E WGG
Sbjct: 116 FTSVYYVVEGGVYDPGCAPEMRSLIAQIVASDPEAYCEAVLGKTNREYCEWIRREETWGG 175

Query: 116 AIELSILADYYGSEIAAYDIQTTRCDLYGQISAF 149
           AIE+SIL+ +Y  EI   D QT R D +G+ + +
Sbjct: 176 AIEVSILSKFYQCEICVVDTQTVRIDRFGEDAGY 209

Hydrolase that can remove conjugated ubiquitin from proteins and participates in endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by triming the ubiquitin chain on the associated substrate to facilitate their threading through the VCP/p97 pore. Ubiquitin moieties on substrates may present a steric impediment to the threading process when the substrate is transferred to the VCP pore and threaded through VCP's axial channel.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q9VRJ9|OTU1_DROME Ubiquitin thioesterase OTU1 OS=Drosophila melanogaster GN=CG4603 PE=2 SV=1

 Score = 76.6 bits (187), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 34/70 (48%), Positives = 48/70 (68%)

Query: 80  IAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTR 139
           IA  VA+D   +++A +GKSN +YC+WIQ  + WGGAIE+SIL++YYG EI   DIQ   
Sbjct: 186 IAQEVAADPQSYNDAVLGKSNAEYCAWIQKADSWGGAIEVSILSNYYGIEIDVVDIQNAI 245

Query: 140 CDLYGQISAF 149
            + +G+   F
Sbjct: 246 INRFGEDKNF 255

Hydrolase that can remove conjugated ubiquitin from proteins and may therefore play an important regulatory role at the level of protein turnover by preventing degradation.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
242060618	208	hypothetical protein SORBIDRAFT_04g00442	0.561	0.485	0.590	4e-32
224117526	208	predicted protein [Populus trichocarpa]	0.566	0.490	0.593	6e-32
357494501	208	Ubiquitin thioesterase OTU1 [Medicago tr	0.566	0.490	0.585	1e-31
388500670	184	unknown [Medicago truncatula]	0.566	0.554	0.585	1e-31
255583601	208	cysteine-type peptidase, putative [Ricin	0.527	0.456	0.689	2e-31
226509350	208	uncharacterized protein LOC100279494 [Ze	0.561	0.485	0.581	4e-31
351725507	208	uncharacterized protein LOC100499809 [Gl	0.561	0.485	0.590	5e-31
356501525	208	PREDICTED: ubiquitin thioesterase OTU1-l	0.561	0.485	0.590	6e-31
217072950	136	unknown [Medicago truncatula]	0.566	0.75	0.577	8e-31
225460981	219	PREDICTED: ubiquitin thioesterase OTU1 i	0.561	0.461	0.565	2e-30

>gi|242060618|ref|XP_002451598.1| hypothetical protein SORBIDRAFT_04g004420 [Sorghum bicolor] gi|241931429|gb|EES04574.1| hypothetical protein SORBIDRAFT_04g004420 [Sorghum bicolor]

 Score =  142 bits (359), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 72/122 (59%), Positives = 85/122 (69%), Gaps = 21/122 (17%)

Query: 77  QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQ 136
           ++ IAATVASD  K++EAF+GK N+ YC+WI DPEKWGGAIELSIL++YYG EIAAYDIQ
Sbjct: 36  RQVIAATVASDPEKYNEAFLGKPNEAYCAWILDPEKWGGAIELSILSEYYGREIAAYDIQ 95

Query: 137 TTRCDLYGQ---------------------ISAFEGAPVEFDQSSVPVRKDRTIGPAEEL 175
           TTRCDLYGQ                     +S  EGAP EFDQ+  PV  +R+IGPAE L
Sbjct: 96  TTRCDLYGQEKNYSERAMLIYDGLHYDALAMSPAEGAPEEFDQTIFPVNHNRSIGPAEGL 155

Query: 176 AF 177
           A 
Sbjct: 156 AL 157

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117526|ref|XP_002317598.1| predicted protein [Populus trichocarpa] gi|222860663|gb|EEE98210.1| predicted protein [Populus trichocarpa]

 Score =  142 bits (357), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 73/123 (59%), Positives = 84/123 (68%), Gaps = 21/123 (17%)

Query: 77  QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQ 136
           ++ IA TVASD  K++EAF+GK N +YC+WI+D EKWGGAIELSILADYYG EIAAYDIQ
Sbjct: 36  RQVIAGTVASDPEKYNEAFLGKPNGEYCNWIRDSEKWGGAIELSILADYYGREIAAYDIQ 95

Query: 137 TTRCDLYGQ---------------------ISAFEGAPVEFDQSSVPVRKDRTIGPAEEL 175
           T RCDLYGQ                     +S FEGAP EFDQ+   V+KDRTIGPAE  
Sbjct: 96  TMRCDLYGQDRKYSERAMLIYDGLHYDALAMSPFEGAPEEFDQTIFTVQKDRTIGPAEGH 155

Query: 176 AFE 178
           A  
Sbjct: 156 ALN 158

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357494501|ref|XP_003617539.1| Ubiquitin thioesterase OTU1 [Medicago truncatula] gi|217074660|gb|ACJ85690.1| unknown [Medicago truncatula] gi|355518874|gb|AET00498.1| Ubiquitin thioesterase OTU1 [Medicago truncatula] gi|388510632|gb|AFK43382.1| unknown [Medicago truncatula]

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 72/123 (58%), Positives = 84/123 (68%), Gaps = 21/123 (17%)

Query: 77  QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQ 136
           ++ IAATVASD  K+SEAF+GK N  YC+WI DPEKWGGAIELSILADYYG EIAAYDIQ
Sbjct: 36  RQVIAATVASDPEKYSEAFLGKPNSAYCNWILDPEKWGGAIELSILADYYGREIAAYDIQ 95

Query: 137 TTRCDLYGQ---------------------ISAFEGAPVEFDQSSVPVRKDRTIGPAEEL 175
           TTRCDLYGQ                     +S  EGAP +FDQ+   ++K+R+IGP E L
Sbjct: 96  TTRCDLYGQEGNYSERVMLIYDGLHYDALAVSPVEGAPEDFDQTIFVIQKNRSIGPVEGL 155

Query: 176 AFE 178
           A  
Sbjct: 156 ALN 158

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500670|gb|AFK38401.1| unknown [Medicago truncatula]

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 72/123 (58%), Positives = 84/123 (68%), Gaps = 21/123 (17%)

Query: 77  QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQ 136
           ++ IAATVASD  K+SEAF+GK N  YC+WI DPEKWGGAIELSILADYYG EIAAYDIQ
Sbjct: 12  RQVIAATVASDPEKYSEAFLGKPNSAYCNWILDPEKWGGAIELSILADYYGREIAAYDIQ 71

Query: 137 TTRCDLYGQ---------------------ISAFEGAPVEFDQSSVPVRKDRTIGPAEEL 175
           TTRCDLYGQ                     +S  EGAP +FDQ+   ++K+R+IGP E L
Sbjct: 72  TTRCDLYGQEGNYSERVMLIYDGLHYDALAVSPVEGAPEDFDQTIFVIQKNRSIGPVEGL 131

Query: 176 AFE 178
           A  
Sbjct: 132 ALN 134

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583601|ref|XP_002532556.1| cysteine-type peptidase, putative [Ricinus communis] gi|223527711|gb|EEF29817.1| cysteine-type peptidase, putative [Ricinus communis]

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 71/103 (68%), Positives = 82/103 (79%), Gaps = 8/103 (7%)

Query: 1   MLIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDT 60
           MLIYDGLHYDALAISPFEGAPEEFDQTIF VQK RT+G AE LAL LVKEQQRK++YTDT
Sbjct: 113 MLIYDGLHYDALAISPFEGAPEEFDQTIFAVQKDRTVGLAEGLALNLVKEQQRKRSYTDT 172

Query: 61  ANFTLCYGVCQIGVIGQKAIAATVASDTVKHSEAFIGKSNQDY 103
           +NFTL  GVCQIGV+GQK        + V+H++A    + Q+Y
Sbjct: 173 SNFTLRCGVCQIGVVGQK--------EAVEHAQATGHVNFQEY 207

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226509350|ref|NP_001145967.1| uncharacterized protein LOC100279494 [Zea mays] gi|195647914|gb|ACG43425.1| hypothetical protein [Zea mays] gi|219885153|gb|ACL52951.1| unknown [Zea mays] gi|413926491|gb|AFW66423.1| hypothetical protein ZEAMMB73_214721 [Zea mays]

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 71/122 (58%), Positives = 82/122 (67%), Gaps = 21/122 (17%)

Query: 77  QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQ 136
           ++ IAATVA D  K +E F+GK N+ YC+WI DPEKWGGAIELSIL++YYG EIAAYDIQ
Sbjct: 36  RQVIAATVAGDPEKFNEVFLGKPNEAYCAWILDPEKWGGAIELSILSEYYGREIAAYDIQ 95

Query: 137 TTRCDLYGQ---------------------ISAFEGAPVEFDQSSVPVRKDRTIGPAEEL 175
           TTRCDLYGQ                     +S  EGAP EFDQ+  PV  DR+IGPAE L
Sbjct: 96  TTRCDLYGQEKNYSERAMLIYDGLHYDALAMSPAEGAPEEFDQTIFPVNHDRSIGPAEGL 155

Query: 176 AF 177
           A 
Sbjct: 156 AL 157

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725507|ref|NP_001236327.1| uncharacterized protein LOC100499809 [Glycine max] gi|255626797|gb|ACU13743.1| unknown [Glycine max]

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 72/122 (59%), Positives = 83/122 (68%), Gaps = 21/122 (17%)

Query: 77  QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQ 136
           ++ IAATVASD  K+ EAF+GK N +YC+WI D EKWGGAIELSILADYYG EIAAYDIQ
Sbjct: 36  RQVIAATVASDPQKYCEAFLGKPNTEYCNWILDSEKWGGAIELSILADYYGHEIAAYDIQ 95

Query: 137 TTRCDLYGQ---------------------ISAFEGAPVEFDQSSVPVRKDRTIGPAEEL 175
           TTRCDLYGQ                     +S FE AP EFDQ+   V+K+R+IGP E L
Sbjct: 96  TTRCDLYGQERNYSERVMLIYDGLHYDALVMSPFEEAPEEFDQTIFAVQKNRSIGPVEGL 155

Query: 176 AF 177
           A 
Sbjct: 156 AL 157

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501525|ref|XP_003519575.1| PREDICTED: ubiquitin thioesterase OTU1-like isoform 1 [Glycine max] gi|356501527|ref|XP_003519576.1| PREDICTED: ubiquitin thioesterase OTU1-like isoform 2 [Glycine max]

 Score =  139 bits (349), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 72/122 (59%), Positives = 83/122 (68%), Gaps = 21/122 (17%)

Query: 77  QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQ 136
           ++ IAATVASD  K+ EAF+GK N +YC+WI D EKWGGAIELSILADYYG EIAAYDIQ
Sbjct: 36  RQVIAATVASDPQKYCEAFLGKPNAEYCNWILDSEKWGGAIELSILADYYGREIAAYDIQ 95

Query: 137 TTRCDLYGQ---------------------ISAFEGAPVEFDQSSVPVRKDRTIGPAEEL 175
           TTRCDLYGQ                     +S FE AP EFDQ+   V+K+R+IGP E L
Sbjct: 96  TTRCDLYGQESNYSERVMLIYDGLHYDALVMSPFEEAPEEFDQTIFAVQKNRSIGPVEGL 155

Query: 176 AF 177
           A 
Sbjct: 156 AL 157

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072950|gb|ACJ84835.1| unknown [Medicago truncatula]

 Score =  138 bits (348), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 71/123 (57%), Positives = 84/123 (68%), Gaps = 21/123 (17%)

Query: 77  QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQ 136
           ++ IAATVASD  K+SEAF+GK N  YC+WI DPEKWGGAIELSILADYYG EIAAYDIQ
Sbjct: 12  RQVIAATVASDPEKYSEAFLGKPNSAYCNWILDPEKWGGAIELSILADYYGREIAAYDIQ 71

Query: 137 TTRCDLYGQ---------------------ISAFEGAPVEFDQSSVPVRKDRTIGPAEEL 175
           TTRCDLYGQ                     +S  EGAP +FDQ+   ++K+R+IGP E  
Sbjct: 72  TTRCDLYGQEGNYSERVMLIYDGLHYDALAVSPVEGAPEDFDQTIFVIQKNRSIGPVEGA 131

Query: 176 AFE 178
            F+
Sbjct: 132 CFK 134

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460981|ref|XP_002280308.1| PREDICTED: ubiquitin thioesterase OTU1 isoform 3 [Vitis vinifera]

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 69/122 (56%), Positives = 82/122 (67%), Gaps = 21/122 (17%)

Query: 77  QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQ 136
           ++ IAA V SD  K+SEAF+ K N++YC+WI +PEKWGGAIELSILADYYG EIAAYDIQ
Sbjct: 47  RQVIAAIVQSDATKYSEAFLEKPNEEYCAWILNPEKWGGAIELSILADYYGREIAAYDIQ 106

Query: 137 TTRCDLYGQ---------------------ISAFEGAPVEFDQSSVPVRKDRTIGPAEEL 175
           T RCD+YGQ                     +S F+GAP EFDQ+   V+ DR IGP EEL
Sbjct: 107 TGRCDVYGQEAGYDERVMLIYDGLHYDALAMSPFDGAPEEFDQTVFTVQTDRAIGPIEEL 166

Query: 176 AF 177
           A 
Sbjct: 167 AL 168

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
TAIR|locus:2007991	208	AT1G50670 "AT1G50670" [Arabido	0.516	0.447	0.691	1.5e-28
MGI|MGI:2442596	343	Yod1 "YOD1 OTU deubiquitinatin	0.483	0.253	0.446	3.5e-16
DICTYBASE|DDB_G0271346	325	yod1 "ubiquitin thioesterase O	0.366	0.203	0.560	5.8e-16
UNIPROTKB|Q29FC9	358	GA18292 "Ubiquitin thioesteras	0.822	0.413	0.351	1.2e-15
UNIPROTKB|J9P3T6	290	YOD1 "Uncharacterized protein"	0.483	0.3	0.436	1.6e-15
ZFIN|ZDB-GENE-050417-217	301	yod1 "YOD1 OTU deubiquinating	0.705	0.421	0.353	3e-15
UNIPROTKB|E2R1N1	345	YOD1 "Uncharacterized protein"	0.483	0.252	0.436	3.8e-15
UNIPROTKB|Q5VVQ6	348	YOD1 "Ubiquitin thioesterase O	0.483	0.25	0.436	4e-15
UNIPROTKB|F1RTR7	348	YOD1 "Uncharacterized protein"	0.483	0.25	0.436	4e-15
RGD|1359726	343	Yod1 "YOD1 OTU deubiquinating	0.483	0.253	0.425	6.3e-15

TAIR|locus:2007991 AT1G50670 "AT1G50670" [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 65/94 (69%), Positives = 74/94 (78%)

Query:     1 MLIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDT 60
             MLIYDGLHYDALA+SPFEGA E+FD TI+PV K R+IG  E LAL LVK+QQRK++YTDT
Sbjct:   113 MLIYDGLHYDALALSPFEGAEEDFDMTIYPVGKDRSIGSIEGLALNLVKDQQRKRSYTDT 172

Query:    61 ANFTLCYGVCQIGVIGQK-AIAATVASDTVKHSE 93
             ANFTL  GVCQIGVIGQK A+    A+  V   E
Sbjct:   173 ANFTLRCGVCQIGVIGQKEAVEHAQATGHVNFQE 206

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

MGI|MGI:2442596 Yod1 "YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 204 (76.9 bits), Expect = 3.5e-16, P = 3.5e-16
 Identities = 42/94 (44%), Positives = 59/94 (62%)

Query:    63 FTLCYGVCQIGVIG-------QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGG 115
             FT  Y V + GV+        ++ IA  VASD V +SEA +GK+N+DYC WI+  + WGG
Sbjct:   157 FTSVYYVVEGGVLNPACAPEMRRLIAQIVASDPVLYSEAILGKTNEDYCDWIRRDDTWGG 216

Query:   116 AIELSILADYYGSEIAAYDIQTTRCDLYGQISAF 149
             AIE+SIL+ +Y  EI   D QT R D +G+ + +
Sbjct:   217 AIEISILSKFYQCEICVVDTQTVRIDRFGEDAGY 250

GO:0004843 "ubiquitin-specific protease activity" evidence=ISO

GO:0005622 "intracellular" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0006986 "response to unfolded protein" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=ISO

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0070536 "protein K63-linked deubiquitination" evidence=ISO

GO:0071108 "protein K48-linked deubiquitination" evidence=ISO

DICTYBASE|DDB_G0271346 yod1 "ubiquitin thioesterase OTU1" [Dictyostelium discoideum (taxid:44689)]

 Score = 201 (75.8 bits), Expect = 5.8e-16, P = 5.8e-16
 Identities = 37/66 (56%), Positives = 50/66 (75%)

Query:    80 IAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTR 139
             IA  V SD  +++EA +GKSN+ YC+WIQ+P+ WGGAIELSIL+++Y  EIAA+DI T  
Sbjct:   158 IAQNVKSDPFEYNEAVLGKSNEGYCNWIQNPKNWGGAIELSILSNHYKVEIAAFDISTQL 217

Query:   140 CDLYGQ 145
                YG+
Sbjct:   218 MYCYGE 223

GO:0030587 "sorocarp development" evidence=IMP

GO:0005575 "cellular_component" evidence=ND

GO:0016579 "protein deubiquitination" evidence=ISS

GO:0004843 "ubiquitin-specific protease activity" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|Q29FC9 GA18292 "Ubiquitin thioesterase OTU1" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 200 (75.5 bits), Expect = 1.2e-15, P = 1.2e-15
 Identities = 59/168 (35%), Positives = 86/168 (51%)

Query:    22 EEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTANFTLCYGVCQIGV-IGQKAI 80
             +  +  I P + G   G    + LK V        +T +  F L   V   G  + +  I
Sbjct:   140 QSLEPVISPEESGPN-GNFNGILLKKVVPADNSCLFT-SIRFVLNGKVDNEGSEMMRHII 197

Query:    81 AATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTRC 140
             A  V++DT ++++A +GKSN DYC+WIQ  + WGGAIE+SIL++YYG EI   DIQ    
Sbjct:   198 AQEVSADTQQYNDAVLGKSNSDYCAWIQKADSWGGAIEVSILSNYYGIEIDVVDIQNAII 257

Query:   141 DLYGQ--------ISAFEGA---PV--EFDQSSVPVRKDRTIGPAEEL 175
             + +G+           F+G    P+  E  Q+SVP     TI P EE+
Sbjct:   258 NRFGEDKNFGLRVFLLFDGIHYDPLYMETQQNSVPA----TIFPVEEM 301

GO:0005575 "cellular_component" evidence=ND

GO:0006520 "cellular amino acid metabolic process" evidence=ISS

UNIPROTKB|J9P3T6 YOD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 41/94 (43%), Positives = 58/94 (61%)

Query:    63 FTLCYGVCQIGVIG-------QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGG 115
             FT  Y V + GV+        ++ IA  VASD   +SEA +GK+NQ+YC WI+  + WGG
Sbjct:   104 FTSVYYVVEGGVLNPACAPEMRRLIAQIVASDPDFYSEAILGKTNQEYCDWIKRDDTWGG 163

Query:   116 AIELSILADYYGSEIAAYDIQTTRCDLYGQISAF 149
             AIE+SIL+ +Y  EI   D QT R D +G+ + +
Sbjct:   164 AIEISILSKFYQCEICVVDTQTVRIDRFGEDAGY 197

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

ZFIN|ZDB-GENE-050417-217 yod1 "YOD1 OTU deubiquinating enzyme 1 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 193 (73.0 bits), Expect = 3.0e-15, P = 3.0e-15
 Identities = 47/133 (35%), Positives = 73/133 (54%)

Query:    22 EEFDQTIFPVQKGRTIGPAEDLAL---KLVKEQQRKKTYTDTANFTLCYGVCQIGVIGQK 78
             EE ++   PVQ   T GP+ ++     + V        +T + N+ +  GV       + 
Sbjct:    77 EEKNKPKPPVQPTVTKGPSFEVTPVVERRVVPADNSCLFT-SVNYVMEGGVYDPACASEM 135

Query:    79 A--IAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQ 136
                IA  VASD   +SEA +GK+N++YC+WI+  + WGGAIE+SIL+ +Y  EI   D Q
Sbjct:   136 RGLIAQIVASDPTAYSEAVLGKTNEEYCTWIRRDDTWGGAIEVSILSKFYQCEICVVDTQ 195

Query:   137 TTRCDLYGQISAF 149
             T R D +G+ + +
Sbjct:   196 TVRVDRFGEDAGY 208

GO:0004843 "ubiquitin-specific protease activity" evidence=ISS

GO:0030433 "ER-associated protein catabolic process" evidence=ISS

GO:0071108 "protein K48-linked deubiquitination" evidence=ISS

GO:0006520 "cellular amino acid metabolic process" evidence=ISS

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=ISS

GO:0070536 "protein K63-linked deubiquitination" evidence=ISS

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0006986 "response to unfolded protein" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

UNIPROTKB|E2R1N1 YOD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 195 (73.7 bits), Expect = 3.8e-15, P = 3.8e-15
 Identities = 41/94 (43%), Positives = 58/94 (61%)

Query:    63 FTLCYGVCQIGVIG-------QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGG 115
             FT  Y V + GV+        ++ IA  VASD   +SEA +GK+NQ+YC WI+  + WGG
Sbjct:   159 FTSVYYVVEGGVLNPACAPEMRRLIAQIVASDPDFYSEAILGKTNQEYCDWIKRDDTWGG 218

Query:   116 AIELSILADYYGSEIAAYDIQTTRCDLYGQISAF 149
             AIE+SIL+ +Y  EI   D QT R D +G+ + +
Sbjct:   219 AIEISILSKFYQCEICVVDTQTVRIDRFGEDAGY 252

GO:0071108 "protein K48-linked deubiquitination" evidence=IEA

GO:0070536 "protein K63-linked deubiquitination" evidence=IEA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|Q5VVQ6 YOD1 "Ubiquitin thioesterase OTU1" [Homo sapiens (taxid:9606)]

 Score = 195 (73.7 bits), Expect = 4.0e-15, P = 4.0e-15
 Identities = 41/94 (43%), Positives = 58/94 (61%)

Query:    63 FTLCYGVCQIGVIG-------QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGG 115
             FT  Y V + GV+        ++ IA  VASD   +SEA +GK+NQ+YC WI+  + WGG
Sbjct:   162 FTSVYYVVEGGVLNPACAPEMRRLIAQIVASDPDFYSEAILGKTNQEYCDWIKRDDTWGG 221

Query:   116 AIELSILADYYGSEIAAYDIQTTRCDLYGQISAF 149
             AIE+SIL+ +Y  EI   D QT R D +G+ + +
Sbjct:   222 AIEISILSKFYQCEICVVDTQTVRIDRFGEDAGY 255

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=ISS

GO:0004843 "ubiquitin-specific protease activity" evidence=IDA

GO:0071108 "protein K48-linked deubiquitination" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IMP

GO:0030433 "ER-associated protein catabolic process" evidence=IMP

GO:0070536 "protein K63-linked deubiquitination" evidence=IDA

UNIPROTKB|F1RTR7 YOD1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 195 (73.7 bits), Expect = 4.0e-15, P = 4.0e-15
 Identities = 41/94 (43%), Positives = 58/94 (61%)

Query:    63 FTLCYGVCQIGVIG-------QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGG 115
             FT  Y V + GV+        ++ IA  VASD   +SEA +GK+NQ+YC WI+  + WGG
Sbjct:   162 FTSVYYVVEGGVLNPACAPEMRRLIAQIVASDPDFYSEAILGKTNQEYCDWIKRDDTWGG 221

Query:   116 AIELSILADYYGSEIAAYDIQTTRCDLYGQISAF 149
             AIE+SIL+ +Y  EI   D QT R D +G+ + +
Sbjct:   222 AIEISILSKFYQCEICVVDTQTVRIDRFGEDAGY 255

GO:0071108 "protein K48-linked deubiquitination" evidence=IEA

GO:0070536 "protein K63-linked deubiquitination" evidence=IEA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

RGD|1359726 Yod1 "YOD1 OTU deubiquinating enzyme 1 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 193 (73.0 bits), Expect = 6.3e-15, P = 6.3e-15
 Identities = 40/94 (42%), Positives = 58/94 (61%)

Query:    63 FTLCYGVCQIGVIG-------QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGG 115
             FT  Y V + GV+        ++ IA  VASD   +SEA +GK+N++YC WI+  + WGG
Sbjct:   157 FTSVYYVVEGGVLNPACAPEMRRLIAQIVASDPDLYSEAILGKTNEEYCDWIRRDDTWGG 216

Query:   116 AIELSILADYYGSEIAAYDIQTTRCDLYGQISAF 149
             AIE+SIL+ +Y  EI   D QT R D +G+ + +
Sbjct:   217 AIEISILSKFYQCEICVVDTQTVRIDRFGEDAGY 250

GO:0004843 "ubiquitin-specific protease activity" evidence=ISO;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=ISO;ISS

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=ISO;ISS

GO:0070536 "protein K63-linked deubiquitination" evidence=ISO;ISS

GO:0071108 "protein K48-linked deubiquitination" evidence=ISO;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.19	LOW CONFIDENCE prediction!
3rd Layer	3.4.19.12	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	Sb04g004420.1	hypothetical protein (208 aa)
		(Sorghum bicolor)
Predicted Functional Partners:
	Sb02g001920.1	hypothetical protein (732 aa)					•	•			0.823
	Sb09g030220.1	hypothetical protein (663 aa)		•							0.636
	Sb09g030210.1	hypothetical protein (496 aa)		•							0.602

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	180
pfam02338	123	pfam02338, OTU, OTU-like cysteine protease	4e-08
COG5539	306	COG5539, COG5539, Predicted cysteine protease (OTU	2e-06

>gnl|CDD|216981 pfam02338, OTU, OTU-like cysteine protease

 Score = 49.1 bits (117), Expect = 4e-08
 Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 9/84 (10%)

Query: 71  QIGVIGQKAIAATVASDTVKH--------SEAFIGKSNQDYCSWIQDPEKWGGAIELSIL 122
           Q+G  G++ +   +    V++         +      N+ Y  WI     WGG IE+  L
Sbjct: 14  QLGDAGRQELHDELREAVVEYLRENREDFEKFLEEDENEYYK-WISKDGAWGGNIEIFAL 72

Query: 123 ADYYGSEIAAYDIQTTRCDLYGQI 146
           A      I  Y +Q  R  +Y +I
Sbjct: 73  AHILRVPIIVYKLQGGRITVYIKI 96

This family is comprised of a group of predicted cysteine proteases, homologous to the Ovarian Tumour (OTU) gene in Drosophila. Members include proteins from eukaryotes, viruses and pathogenic bacterium. The conserved cysteine and histidine, and possibly the aspartate, represent the catalytic residues in this putative group of proteases. Length = 123

>gnl|CDD|227826 COG5539, COG5539, Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

 Score = 46.8 bits (111), Expect = 2e-06
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 78  KAIAAT-VASDTVKHSEAFIGKSNQDYCSWIQDPEKWG-GAIELSILADYYGSEIAAYDI 135
           + + +  V S+   ++ A +      Y +WI  P+  G G IE++I++D     I   D+
Sbjct: 141 REVVSLEVLSNPDLYNPAILEIDVIAYATWIVKPDSQGDGCIEIAIISDQLPVRIHVVDV 200

Query: 136 QTTRCDLYG 144
                D Y 
Sbjct: 201 DKDSEDRYN 209

Length = 306

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	180
KOG3288	307	consensus OTU-like cysteine protease [Signal trans	99.96
KOG3288	307	consensus OTU-like cysteine protease [Signal trans	99.89
KOG2606	302	consensus OTU (ovarian tumor)-like cysteine protea	99.56
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	99.41
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	99.02
PF02338	121	OTU: OTU-like cysteine protease; InterPro: IPR0033	98.96
PF10275	244	Peptidase_C65: Peptidase C65 Otubain; InterPro: IP	96.96
KOG3991	256	consensus Uncharacterized conserved protein [Funct	95.67
KOG2605	371	consensus OTU (ovarian tumor)-like cysteine protea	80.34

>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.1e-30  Score=221.74  Aligned_cols=106  Identities=44%  Similarity=0.728  Sum_probs=94.6

Q ss_pred             cchhHHHHHHHHhccccccccccCCChHHHHHhcCCCCCcccHHHHHHHHhHhCceEEEEEcCCCceeeeec--------
Q 030263           74 VIGQKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTRCDLYGQ--------  145 (180)
Q Consensus        74 l~lr~~vA~~I~~~p~~y~~~~L~~~~~eYc~~I~~~~~WGG~IEL~iLS~~~~~~I~v~d~~~~~~~~fge--------  145 (180)
                      .+||+++|+.+++||+.||+|+|||++.|||.||++.++|||+|||+|||++|+++|+|+|++++|+++|||        
T Consensus       139 ~elR~iiA~~Vasnp~~yn~AiLgK~n~eYc~WI~k~dsWGGaIElsILS~~ygveI~vvDiqt~rid~fged~~~~~rv  218 (307)
T KOG3288|consen  139 YELREIIAQEVASNPDKYNDAILGKPNKEYCAWILKMDSWGGAIELSILSDYYGVEICVVDIQTVRIDRFGEDKNFDNRV  218 (307)
T ss_pred             HHHHHHHHHHHhcChhhhhHHHhCCCcHHHHHHHccccccCceEEeeeehhhhceeEEEEecceeeehhcCCCCCCCceE
Confidence            479999999999999999999999999999999999999999999999999999999999999999999999        


Q ss_pred             -----------ccCCCCCCCCCCeeeeeCCCCCChhHHHHHHhhh
Q 030263          146 -----------ISAFEGAPVEFDQSSVPVRKDRTIGPAEELAFET  179 (180)
Q Consensus       146 -----------~~~~~~~~~~~d~t~f~~~d~~~~~~~l~~a~~l  179 (180)
                                 +....-.|.+.|.|+||.+|+.++..++++|.+|
T Consensus       219 ~llydGIHYD~l~m~~~~~~~~~~tifp~~dd~v~~~alqLa~~~  263 (307)
T KOG3288|consen  219 LLLYDGIHYDPLAMNEFKPTDVDNTIFPVSDDTVLTQALQLASEL  263 (307)
T ss_pred             EEEecccccChhhhccCCccCCcccccccccchHHHHHHHHHHHH
Confidence                       1111225678899999999987777788877764

>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=4.3e-24  Score=181.59  Aligned_cols=86  Identities=47%  Similarity=0.746  Sum_probs=77.1

Q ss_pred             CeeecccccceeeccCCCCCCCCCCeeeeeCCCCCccchHHHHHHHHHHHHHhcCCCcccccceeeecccccccchhHHH
Q 030263            1 MLIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTANFTLCYGVCQIGVIGQKAI   80 (180)
Q Consensus         1 ~liYsGIHYD~l~l~~~~~~~~~~d~t~F~~~d~~~l~~~~~~A~~L~~~lk~~~~~Tdt~~F~l~C~~C~~~l~lr~~v   80 (180)
                      +|||||||||+|++++.  .|.+.|-|+||.+|+.+    +..|++||+++|++||||||++|+|||++|+.++.|++.+
T Consensus       219 ~llydGIHYD~l~m~~~--~~~~~~~tifp~~dd~v----~~~alqLa~~~k~~r~ytdt~~ftlRC~~Cq~glvGq~ea  292 (307)
T KOG3288|consen  219 LLLYDGIHYDPLAMNEF--KPTDVDNTIFPVSDDTV----LTQALQLASELKRTRYYTDTAKFTLRCMVCQMGLVGQKEA  292 (307)
T ss_pred             EEEecccccChhhhccC--CccCCcccccccccchH----HHHHHHHHHHHHhcceeccccceEEEeeecccceeeHHHH
Confidence            58999999999999976  56778999999999755    4899999999999999999999999999999999999755


Q ss_pred             HHHHHhccccccc
Q 030263           81 AATVASDTVKHSE   93 (180)
Q Consensus        81 A~~I~~~p~~y~~   93 (180)
                      + .|+..++|-|-
T Consensus       293 ~-eHA~~TGH~nF  304 (307)
T KOG3288|consen  293 A-EHAKATGHVNF  304 (307)
T ss_pred             H-HHHHhcCCCcc
Confidence            5 49999999763

>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=2.8e-15  Score=129.85  Aligned_cols=70  Identities=20%  Similarity=0.349  Sum_probs=64.5

Q ss_pred             chhHHHHHHHHhccccccccccC------C---ChHHHHHhcCCCCCcccHHHHHHHHhHhCceEEEEEcCCCceeeeec
Q 030263           75 IGQKAIAATVASDTVKHSEAFIG------K---SNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTRCDLYGQ  145 (180)
Q Consensus        75 ~lr~~vA~~I~~~p~~y~~~~L~------~---~~~eYc~~I~~~~~WGG~IEL~iLS~~~~~~I~v~d~~~~~~~~fge  145 (180)
                      .||...|+|+++|-++|-|+++.      .   ++++||+.|++|..|||+|||.|||+.|++||.||+.. +.+..|||
T Consensus       191 kLR~~~a~Ymr~H~~df~pf~~~eet~d~~~~~~f~~Yc~eI~~t~~WGgelEL~AlShvL~~PI~Vy~~~-~p~~~~ge  269 (302)
T KOG2606|consen  191 KLREETADYMREHVEDFLPFLLDEETGDSLGPEDFDKYCREIRNTAAWGGELELKALSHVLQVPIEVYQAD-GPILEYGE  269 (302)
T ss_pred             HHHHHHHHHHHHHHHHhhhHhcCccccccCCHHHHHHHHHHhhhhccccchHHHHHHHHhhccCeEEeecC-CCceeech
Confidence            79999999999999999997763      2   39999999999999999999999999999999999975 66999997

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=99.41  E-value=4.6e-14  Score=122.11  Aligned_cols=72  Identities=24%  Similarity=0.399  Sum_probs=70.1

Q ss_pred             cchhHHHHHHHHhccccccccccCCChHHHHHhcCCCCCcc-cHHHHHHHHhHhCceEEEEEcCCCceeeeec
Q 030263           74 VIGQKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWG-GAIELSILADYYGSEIAAYDIQTTRCDLYGQ  145 (180)
Q Consensus        74 l~lr~~vA~~I~~~p~~y~~~~L~~~~~eYc~~I~~~~~WG-G~IEL~iLS~~~~~~I~v~d~~~~~~~~fge  145 (180)
                      -+||.+++..+.++|+.|++++++.|.-+||.||.++++|| |.||+.|||+.|+++|+|+|+..++.++||+
T Consensus       138 ~~lrE~vs~Ev~snPDl~n~~i~~~~~i~y~~~i~k~d~~~dG~ieia~iS~~l~v~i~~Vdv~~~~~dr~~~  210 (306)
T COG5539         138 AKLREVVSLEVLSNPDLYNPAILEIDVIAYATWIVKPDSQGDGCIEIAIISDQLPVRIHVVDVDKDSEDRYNS  210 (306)
T ss_pred             HHHHHHHHHHHhhCccccchhhcCcchHHHHHhhhccccCCCceEEEeEeccccceeeeeeecchhHHhhccC
Confidence            47999999999999999999999999999999999999999 9999999999999999999999899999998

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=1.1e-10  Score=101.21  Aligned_cols=85  Identities=20%  Similarity=0.310  Sum_probs=65.6

Q ss_pred             eeecccccceeeccCCCCCCCCCCeeeeeCCCCCccchHHHHHHHHHHHHHhcCCCcccccceeeecccccccchhHHHH
Q 030263            2 LIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTANFTLCYGVCQIGVIGQKAIA   81 (180)
Q Consensus         2 liYsGIHYD~l~l~~~~~~~~~~d~t~F~~~d~~~l~~~~~~A~~L~~~lk~~~~~Tdt~~F~l~C~~C~~~l~lr~~vA   81 (180)
                      ++|+|||||..++...+- ...++.-.|+.++-     +.-.+++||+-|+..+|+|||+++.++|+.||.+++|.+.+.
T Consensus       219 i~f~g~hfD~~t~~m~~~-dt~~ne~~~~a~~g-----~~~ei~qLas~lk~~~~~~nT~~~~ik~n~c~~~~~~e~~~~  292 (306)
T COG5539         219 ILFTGIHFDEETLAMVLW-DTYVNEVLFDASDG-----ITIEIQQLASLLKNPHYYTNTASPSIKCNICGTGFVGEKDYY  292 (306)
T ss_pred             hhhcccccchhhhhcchH-HHHHhhhccccccc-----chHHHHHHHHHhcCceEEeecCCceEEeeccccccchhhHHH
Confidence            479999999998653220 11123344444443     236899999999999999999999999999999999997555


Q ss_pred             HHHHhccccccc
Q 030263           82 ATVASDTVKHSE   93 (180)
Q Consensus        82 ~~I~~~p~~y~~   93 (180)
                      + |+--+||||-
T Consensus       293 ~-Ha~a~GH~n~  303 (306)
T COG5539         293 A-HALATGHYNF  303 (306)
T ss_pred             H-HHHhhcCccc
Confidence            5 9999999985

>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae

Probab=98.96  E-value=4.7e-10  Score=83.98  Aligned_cols=63  Identities=25%  Similarity=0.392  Sum_probs=55.9

Q ss_pred             cchhHHHHHHHH-hccccccccccCCChHHHHHhcCCCCCcccHHHHHHHHhHhCceEEEEEcCCCceeee
Q 030263           74 VIGQKAIAATVA-SDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTRCDLY  143 (180)
Q Consensus        74 l~lr~~vA~~I~-~~p~~y~~~~L~~~~~eYc~~I~~~~~WGG~IEL~iLS~~~~~~I~v~d~~~~~~~~f  143 (180)
                      .++|+.++++++ .+++.|.+++.+.       +++++..|||++||.|||+.|+++|.|++..+++...+
T Consensus        27 ~~lR~~~~~~l~~~~~~~~~~~~~~~-------~~~~~~~Wg~~~el~a~a~~~~~~I~v~~~~~~~~~~~   90 (121)
T PF02338_consen   27 QELRKAVVDYLRDKNRDKFEEFLEGD-------KMSKPGTWGGEIELQALANVLNRPIIVYSSSDGDNVVF   90 (121)
T ss_dssp             HHHHHHHHHHHHTHTTTHHHHHHHHH-------HHTSTTSHEEHHHHHHHHHHHTSEEEEECETTTBEEEE
T ss_pred             HHHHHHHHHHHHHhccchhhhhhhhh-------hhccccccCcHHHHHHHHHHhCCeEEEEEcCCCCccce
Confidence            489999999999 9999999966544       99999999999999999999999999998877765444

In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....

>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.96  E-value=0.002  Score=54.39  Aligned_cols=65  Identities=14%  Similarity=0.184  Sum_probs=51.2

Q ss_pred             cchhHHHHHHHHhccccccccccC---CChHHHH-HhcCCCCCcccHHHHHHHHhHhCceEEEEEcCCC
Q 030263           74 VIGQKAIAATVASDTVKHSEAFIG---KSNQDYC-SWIQDPEKWGGAIELSILADYYGSEIAAYDIQTT  138 (180)
Q Consensus        74 l~lr~~vA~~I~~~p~~y~~~~L~---~~~~eYc-~~I~~~~~WGG~IEL~iLS~~~~~~I~v~d~~~~  138 (180)
                      .-+|-..+.+++.|++.|.+++.|   .++++|| +.|+....=.+.|.+.|||++++++|.|+-...+
T Consensus       140 ~flRLlts~~l~~~~d~y~~fi~~~~~~tve~~C~~~Vep~~~Ead~v~i~ALa~aL~v~i~v~yld~~  208 (244)
T PF10275_consen  140 IFLRLLTSAYLKSNSDEYEPFIDGLEYLTVEEFCSQEVEPMGKEADHVQIIALAQALGVPIRVEYLDRS  208 (244)
T ss_dssp             HHHHHHHHHHHHHTHHHHGGGSSTT--S-HHHHHHHHTSSTT--B-HHHHHHHHHHHT--EEEEESSSS
T ss_pred             HHHHHHHHHHHHhhHHHHhhhhcccccCCHHHHHHhhcccccccchhHHHHHHHHHhCCeEEEEEecCC
Confidence            368888999999999999996666   8899999 6777777788999999999999999999877643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This family of proteins is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryotes, as it is a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. ; PDB: 4DDG_C 3VON_O 2ZFY_A 4DHZ_A 4DDI_C 1TFF_A 4DHJ_I 4DHI_B.

>KOG3991 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.67  E-value=0.016  Score=49.53  Aligned_cols=71  Identities=11%  Similarity=0.085  Sum_probs=57.7

Q ss_pred             chhHHHHHHHHhccccccccccC-CChHHHHHh-cCCCCCcccHHHHHHHHhHhCceEEEEEcCCCceeeeec
Q 030263           75 IGQKAIAATVASDTVKHSEAFIG-KSNQDYCSW-IQDPEKWGGAIELSILADYYGSEIAAYDIQTTRCDLYGQ  145 (180)
Q Consensus        75 ~lr~~vA~~I~~~p~~y~~~~L~-~~~~eYc~~-I~~~~~WGG~IEL~iLS~~~~~~I~v~d~~~~~~~~fge  145 (180)
                      -+|-..+..++++++.|-|++=| +++++||.. ++--..=-+.|+|-|||+++++.|.|..+.-+.....|.
T Consensus       158 ylRLvtS~~ik~~adfy~pFI~e~~tV~~fC~~eVEPm~kesdhi~I~ALs~Al~i~irVey~dr~~~~~~~h  230 (256)
T KOG3991|consen  158 YLRLVTSGFIKSNADFYQPFIDEGMTVKAFCTQEVEPMYKESDHIHITALSQALGIRIRVEYVDRGSGDTVNH  230 (256)
T ss_pred             HHHHHHHHHHhhChhhhhccCCCCCcHHHHHHhhcchhhhccCceeHHHHHhhhCceEEEEEecCCCCCCCCC
Confidence            58888999999999999996665 899999975 444444578999999999999999999876555555553

>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=80.34  E-value=2  Score=39.17  Aligned_cols=51  Identities=14%  Similarity=0.194  Sum_probs=45.4

Q ss_pred             chhHHHHHHHHhccccccccccCCChHHHHHhcCCCCCcccHHHHHHHHhHh
Q 030263           75 IGQKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYY  126 (180)
Q Consensus        75 ~lr~~vA~~I~~~p~~y~~~~L~~~~~eYc~~I~~~~~WGG~IEL~iLS~~~  126 (180)
                      .-|+++.++...+.++|+. +.-+.+..|.+.-+....||-.||+++.|..+
T Consensus       247 ~~~~~~~dq~~~e~~~~~~-~vt~~~~~y~k~kr~~~~~gnhie~Qa~a~~~  297 (371)
T KOG2605|consen  247 HNRRECVDQLKKERDFYED-YVTEDFTSYIKRKRADGEPGNHIEQQAAADIY  297 (371)
T ss_pred             HHHHHHHHHHhhccccccc-ccccchhhcccccccCCCCcchHHHhhhhhhh
Confidence            5677888989889999988 66789999999999999999999999999733

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	180
3by4_A	212	Structure Of Ovarian Tumor (Otu) Domain In Complex		2e-07
3c0r_A	212	Structure Of Ovarian Tumor (Otu) Domain In Complex		2e-07

>pdb|3BY4|A Chain A, Structure Of Ovarian Tumor (Otu) Domain In Complex With Ubiquitin Length = 212

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 39/69 (56%)
Query: 77  QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQ 136
           ++ ++  V ++ VK ++A + K N+DY  WI   E WGGAIE+ I++D     I   DI 
Sbjct: 50  REMVSKEVLNNPVKFNDAILDKPNKDYAQWILKMESWGGAIEIGIISDALAVAIYVVDID 109
Query: 137 TTRCDLYGQ 145
             + + + +
Sbjct: 110 AVKIEKFNE 118

>pdb|3C0R|A Chain A, Structure Of Ovarian Tumor (Otu) Domain In Complex With Ubiquitin Length = 212

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 39/69 (56%)
Query: 77  QKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQ 136
           ++ ++  V ++ VK ++A + K N+DY  WI   E WGGAIE+ I++D     I   DI 
Sbjct: 50  REXVSKEVLNNPVKFNDAILDKPNKDYAQWILKXESWGGAIEIGIISDALAVAIYVVDID 109
Query: 137 TTRCDLYGQ 145
             + + + +
Sbjct: 110 AVKIEKFNE 118

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	180
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	5e-18
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	1e-09
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	5e-10
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	6e-10
3pfy_A	185	OTU domain-containing protein 5; structural genomi	1e-05

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A Length = 212

 Score = 76.9 bits (189), Expect = 5e-18
 Identities = 26/116 (22%), Positives = 47/116 (40%), Gaps = 15/116 (12%)

Query: 78  KAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQT 137
           + ++  V ++ VK ++A + K N+DY  WI   E WGGAIE+ I++D     I   DI  
Sbjct: 51  EMVSKEVLNNPVKFNDAILDKPNKDYAQWILKMESWGGAIEIGIISDALAVAIYVVDIDA 110

Query: 138 TRCDLYGQ---------------ISAFEGAPVEFDQSSVPVRKDRTIGPAEELAFE 178
            + + + +                 +      +   +      D  +  A +LA  
Sbjct: 111 VKIEKFNEDKFDNYILILFNGIHYDSLTMNEFKTVFNKNQPESDDVLTAALQLASN 166

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A Length = 212

 Score = 54.6 bits (131), Expect = 1e-09
 Identities = 15/82 (18%), Positives = 36/82 (43%), Gaps = 9/82 (10%)

Query: 1   MLIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDT 60
           +++++G+HYD+L ++ F+    +       V            AL+L    ++     +T
Sbjct: 126 LILFNGIHYDSLTMNEFKTVFNKNQPESDDVLTA---------ALQLASNLKQTGYSFNT 176

Query: 61  ANFTLCYGVCQIGVIGQKAIAA 82
               +    CQ+  +G++ +A 
Sbjct: 177 HKAQIKCNTCQMTFVGEREVAR 198

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200} Length = 219

 Score = 55.5 bits (133), Expect = 5e-10
 Identities = 13/53 (24%), Positives = 22/53 (41%)

Query: 93  EAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTRCDLYGQ 145
              +G S +DY   +    +WG  +E S+LA   G  I  + +  +     G 
Sbjct: 81  ARLVGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGI 133

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A Length = 185

 Score = 54.7 bits (131), Expect = 6e-10
 Identities = 13/53 (24%), Positives = 22/53 (41%)

Query: 93  EAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTRCDLYGQ 145
              +G S +DY   +    +WG  +E S+LA   G  I  + +  +     G 
Sbjct: 81  ARLVGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGI 133

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A* Length = 185

 Score = 42.8 bits (100), Expect = 1e-05
 Identities = 11/62 (17%), Positives = 23/62 (37%)

Query: 93  EAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTRCDLYGQISAFEGA 152
             ++ +    Y +  +     G  IE+  +A+ Y   +  Y   T   + +  I   E  
Sbjct: 105 SNYVTEDFTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTEPINTFHGIHQNEDE 164

Query: 153 PV 154
           P+
Sbjct: 165 PI 166

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	180
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	99.88
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	99.8
3pfy_A	185	OTU domain-containing protein 5; structural genomi	99.61
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.55
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.52
4dhi_B	284	Ubiquitin thioesterase otubain-like; ubiquitin E2	99.18
1tff_A	234	Ubiquitin thiolesterase protein OTUB2; hydrolase;	99.16
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	99.15
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	98.79
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	87.28

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A

Probab=99.88  E-value=4.2e-23  Score=170.88  Aligned_cols=107  Identities=23%  Similarity=0.410  Sum_probs=91.4

Q ss_pred             ccchhHHHHHHHHhccccccccccCCChHHHHHhcCCCCCcccHHHHHHHHhHhCceEEEEEcCCCceeeeeccc-----
Q 030263           73 GVIGQKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTRCDLYGQIS-----  147 (180)
Q Consensus        73 ~l~lr~~vA~~I~~~p~~y~~~~L~~~~~eYc~~I~~~~~WGG~IEL~iLS~~~~~~I~v~d~~~~~~~~fge~~-----  147 (180)
                      ...+|+.++++|++||+.|.|+++++++++||+||+++..|||+|||.|||++|+++|.|++.+++++.+||+-.     
T Consensus        46 ~~~lR~~vv~yi~~n~d~f~e~~~~~~~e~Y~~~m~~~~~WGg~iEL~Als~~~~~~I~V~~~~~~~~~~~~~~~~~~~I  125 (212)
T 3by4_A           46 VRDLREMVSKEVLNNPVKFNDAILDKPNKDYAQWILKMESWGGAIEIGIISDALAVAIYVVDIDAVKIEKFNEDKFDNYI  125 (212)
T ss_dssp             SHHHHHHHHHHHHHCTTTTCHHHHTSCHHHHHHHTTSTTSCCCHHHHHHHHHHHTCEEEEEETTTTEEEEESTTTCSEEE
T ss_pred             HHHHHHHHHHHHHHCHHHHhhhhcCCCHHHHHHHhcCCCEEccHHHHHHHHHHHCCCEEEEECCCCCeEEeCCCCCCCeE
Confidence            458999999999999999999999999999999999999999999999999999999999999888999998711     


Q ss_pred             --CCCC-----CCCCCCeeeeeCCCCCChhHHHHHHhhhC
Q 030263          148 --AFEG-----APVEFDQSSVPVRKDRTIGPAEELAFETC  180 (180)
Q Consensus       148 --~~~~-----~~~~~d~t~f~~~d~~~~~~~l~~a~~l~  180 (180)
                        .+.+     .-.+.|+|+|+++|++. +.++++|++||
T Consensus       126 ~L~Y~g~HYdsl~~~~d~~~f~~~~~~~-~~~~~~a~~l~  164 (212)
T 3by4_A          126 LILFNGIHYDSLTMNEFKTVFNKNQPES-DDVLTAALQLA  164 (212)
T ss_dssp             EEEECSSCEEEEEETTTBCCEETTSTTH-HHHHHHHHHHH
T ss_pred             EEEEcCCcceEEecCCCcccCCccccch-HHHHHHHHHHH
Confidence              0011     11278999999998655 67777777764

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A

Probab=99.80  E-value=1.3e-20  Score=155.97  Aligned_cols=83  Identities=20%  Similarity=0.356  Sum_probs=43.9

Q ss_pred             CeeecccccceeeccCCCCCCCCCCeeeeeCCCCCccchHHHHHHHHHHHHHhcCCCcccccceeeecccccccchhHHH
Q 030263            1 MLIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTANFTLCYGVCQIGVIGQKAI   80 (180)
Q Consensus         1 ~liYsGIHYD~l~l~~~~~~~~~~d~t~F~~~d~~~l~~~~~~A~~L~~~lk~~~~~Tdt~~F~l~C~~C~~~l~lr~~v   80 (180)
                      +|+|+|.|||+|.+        ++|+|+||++|+.. +.++++|++||++||++||||||++|+|+|+.|++++.|++ .
T Consensus       126 ~L~Y~g~HYdsl~~--------~~d~~~f~~~~~~~-~~~~~~a~~l~~~~~~~~~~t~~~~~~l~C~~C~~~~~g~~-~  195 (212)
T 3by4_A          126 LILFNGIHYDSLTM--------NEFKTVFNKNQPES-DDVLTAALQLASNLKQTGYSFNTHKAQIKCNTCQMTFVGER-E  195 (212)
T ss_dssp             EEEECSSCEEEEEE--------TTTBCCEETTSTTH-HHHHHHHHHHHHHHHHTTCCC----------------------
T ss_pred             EEEEcCCcceEEec--------CCCcccCCccccch-HHHHHHHHHHHHHHHHcCCcccccCeEEEcccCCCcccCHH-H
Confidence            48899999999988        57899999998654 56779999999999999999999999999999999999996 6


Q ss_pred             HHHHHhccccccc
Q 030263           81 AATVASDTVKHSE   93 (180)
Q Consensus        81 A~~I~~~p~~y~~   93 (180)
                      |..|++.++|.+-
T Consensus       196 a~~ha~~tgH~~f  208 (212)
T 3by4_A          196 VARHAESTGHVDF  208 (212)
T ss_dssp             -------------
T ss_pred             HHHHHHHhCCCCC
Confidence            7779999999764

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*

Probab=99.61  E-value=3e-16  Score=127.61  Aligned_cols=69  Identities=14%  Similarity=0.276  Sum_probs=46.4

Q ss_pred             cchhHHHHHHHHhccccccccccCCChHHHHHhcCCCCCcccHHHHHHHHhHhCceEEEEEcCCCceeee
Q 030263           74 VIGQKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTRCDLY  143 (180)
Q Consensus        74 l~lr~~vA~~I~~~p~~y~~~~L~~~~~eYc~~I~~~~~WGG~IEL~iLS~~~~~~I~v~d~~~~~~~~f  143 (180)
                      ..+|+.++++|++|++.|.+ |++.++++||+||+++..|||+|||.|||++|+++|.|++..+.++..|
T Consensus        87 ~~LR~~vv~yi~~n~d~f~~-Fv~~~~e~Y~~~m~~~~~WGg~iEL~AlS~~~~v~I~V~~~~~~~i~i~  155 (185)
T 3pfy_A           87 EVVRKHCMDYLMKNADYFSN-YVTEDFTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTEPINTF  155 (185)
T ss_dssp             HHHHHHHHHHHHHTHHHHTT-CC-----------------CCHHHHHHHHHHHTSCEEEESSCSSCSEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHhccHHHHHHHhhCCCccchHHHHHHHHHhhCCcEEEEECCCCCeEEe
Confidence            58999999999999999999 6678999999999999999999999999999999999999865555444

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A

Probab=99.55  E-value=4.9e-15  Score=120.25  Aligned_cols=70  Identities=20%  Similarity=0.368  Sum_probs=62.2

Q ss_pred             ccchhHHHHHHHHhccccccccccCCChHHHHHhcCCCCCcccHHHHHHHHhHhCceEEEEEcCCCc----eeeeec
Q 030263           73 GVIGQKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTTR----CDLYGQ  145 (180)
Q Consensus        73 ~l~lr~~vA~~I~~~p~~y~~~~L~~~~~eYc~~I~~~~~WGG~IEL~iLS~~~~~~I~v~d~~~~~----~~~fge  145 (180)
                      ...+|+.+++++++|++.   +++++++++||+||+++..|||+|||.|||++|+++|.|+++++..    +.+||+
T Consensus        64 ~~~LR~~~~~yi~~~~~~---~~~~~~~~~Y~~~m~~~~~WGg~iEL~Als~~~~v~I~V~~~d~~~~~~~i~~f~~  137 (185)
T 3phx_A           64 KRLTESAARKYYQEEPEA---RLVGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGIKFGD  137 (185)
T ss_dssp             HHHHHHHHHHHGGGCTTH---HHHCCCHHHHHHHHTSTTCCCBHHHHHHHHHHHCCCEEEEEC--CCBCCEEEEESS
T ss_pred             HHHHHHHHHHHHHhChHh---hhcCCCHHHHHHHhhCCCccCcHHHHHHHHHHHCCcEEEEEecCCCCceEEEEcCC
Confidence            458999999999999999   5789999999999999999999999999999999999999865543    688876

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}

Probab=99.52  E-value=6.3e-15  Score=122.67  Aligned_cols=70  Identities=20%  Similarity=0.367  Sum_probs=63.7

Q ss_pred             ccchhHHHHHHHHhccccccccccCCChHHHHHhcCCCCCcccHHHHHHHHhHhCceEEEEEcCCC----ceeeeec
Q 030263           73 GVIGQKAIAATVASDTVKHSEAFIGKSNQDYCSWIQDPEKWGGAIELSILADYYGSEIAAYDIQTT----RCDLYGQ  145 (180)
Q Consensus        73 ~l~lr~~vA~~I~~~p~~y~~~~L~~~~~eYc~~I~~~~~WGG~IEL~iLS~~~~~~I~v~d~~~~----~~~~fge  145 (180)
                      ...+|+.+++++++|++.   +++++++++||+||+++..|||+|||.|||++|+++|.|+++.+.    ++.+||+
T Consensus        64 h~~LR~~va~yi~~n~d~---~~~~~~feeY~~~m~~~g~WGG~iEL~AlS~~~~v~I~V~~~d~~g~~~~i~~fge  137 (219)
T 3phu_A           64 KRLTESAARKYYQEEPEA---RLVGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGIKFGD  137 (219)
T ss_dssp             HHHHHHHHHHHGGGCHHH---HHHCCCHHHHHHHHHSTTCCCCHHHHHHHHHHTTCCEEEEEESSSSBEEEEEEESS
T ss_pred             HHHHHHHHHHHHHhChhh---hhcCCCHHHHHHHhcCCCccCCHHHHHHHHHHhCCCEEEEEecCCCCceeEEEecC
Confidence            358999999999999999   578999999999999999999999999999999999999976654    4788886

>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A

Probab=99.18  E-value=2e-11  Score=105.02  Aligned_cols=62  Identities=11%  Similarity=0.079  Sum_probs=58.4

Q ss_pred             chhHHHHHHHHhccccccccccC-CChHHHHH-hcCCCCCcccHHHHHHHHhHhCceEEEEEcC
Q 030263           75 IGQKAIAATVASDTVKHSEAFIG-KSNQDYCS-WIQDPEKWGGAIELSILADYYGSEIAAYDIQ  136 (180)
Q Consensus        75 ~lr~~vA~~I~~~p~~y~~~~L~-~~~~eYc~-~I~~~~~WGG~IEL~iLS~~~~~~I~v~d~~  136 (180)
                      .+|.++|.+|+.|++.|.|++.| +++++||+ +|+.+..|||+|||.|||++|+++|.|+...
T Consensus       172 ~LRllts~yi~~~~d~f~pFi~~~~~v~~yC~~eVe~~~~e~d~leI~ALa~aL~v~I~V~ylD  235 (284)
T 4dhi_B          172 FFRLITSAFLKQNSEEYAPFIDEGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMD  235 (284)
T ss_dssp             HHHHHHHHHHHHTHHHHGGGSCTTCCHHHHHHHHTSSTTCCCCHHHHHHHHHHTTCCEEEEESS
T ss_pred             HHHHHHHHHHHHCHHHHHhhcCCCCCHHHHHHHhceehhhcccHHHHHHHHHHhCCcEEEEEec
Confidence            69999999999999999997766 79999999 9999999999999999999999999998764

>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11

Probab=99.16  E-value=3.5e-11  Score=100.60  Aligned_cols=65  Identities=8%  Similarity=0.048  Sum_probs=58.0

Q ss_pred             cchhHHHHHHHHhccccccccccC-CChHHHHH-hcCCCCCcccHHHHHHHHhHhCceEEEEEcCCC
Q 030263           74 VIGQKAIAATVASDTVKHSEAFIG-KSNQDYCS-WIQDPEKWGGAIELSILADYYGSEIAAYDIQTT  138 (180)
Q Consensus        74 l~lr~~vA~~I~~~p~~y~~~~L~-~~~~eYc~-~I~~~~~WGG~IEL~iLS~~~~~~I~v~d~~~~  138 (180)
                      ..+|.++|.++++|++.|.|++-| .++++||+ .|+.+..|||+|||.|||+.|+++|.|++..++
T Consensus       133 ~~lR~lta~~i~~~~d~f~pFi~~~~~~~~yC~~~ve~~~~~~~~iei~ALa~aL~v~I~V~~~d~~  199 (234)
T 1tff_A          133 QFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEM  199 (234)
T ss_dssp             HHHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC--
T ss_pred             HHHHHHHHHHHHHCHHHHhhhhcCCCCHHHHHHHHhhhhhcccccHHHHHHHHHhCCCEEEEEcCCC
Confidence            469999999999999999995443 59999999 899999999999999999999999999997654

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A

Probab=99.15  E-value=4.4e-11  Score=99.93  Aligned_cols=65  Identities=12%  Similarity=0.131  Sum_probs=58.0

Q ss_pred             cchhHHHHHHHHhccccccccccC-CChHHHHH-hcCCCCCcccHHHHHHHHhHhCceEEEEEcCCC
Q 030263           74 VIGQKAIAATVASDTVKHSEAFIG-KSNQDYCS-WIQDPEKWGGAIELSILADYYGSEIAAYDIQTT  138 (180)
Q Consensus        74 l~lr~~vA~~I~~~p~~y~~~~L~-~~~~eYc~-~I~~~~~WGG~IEL~iLS~~~~~~I~v~d~~~~  138 (180)
                      ..+|.++|.++++|++.|.|++-| .++++||+ .|+.+..|||+|||.|||++|+++|.|++..++
T Consensus       136 ~~lR~lta~yi~~~~d~f~pFi~~~~~~e~yc~~~ve~~~~~~~~i~i~ALa~al~v~I~V~~~d~~  202 (234)
T 2zfy_A          136 VYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRG  202 (234)
T ss_dssp             HHHHHHHHHHHHHTHHHHGGGCCSSCCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-C
T ss_pred             HHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHHhhhHhhcCCHHHHHHHHHHhCCCEEEEEcCCC
Confidence            379999999999999999995544 59999998 599999999999999999999999999997654

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=98.79  E-value=5.9e-09  Score=92.87  Aligned_cols=65  Identities=12%  Similarity=0.131  Sum_probs=58.9

Q ss_pred             cchhHHHHHHHHhccccccccccC-CChHHHHH-hcCCCCCcccHHHHHHHHhHhCceEEEEEcCCC
Q 030263           74 VIGQKAIAATVASDTVKHSEAFIG-KSNQDYCS-WIQDPEKWGGAIELSILADYYGSEIAAYDIQTT  138 (180)
Q Consensus        74 l~lr~~vA~~I~~~p~~y~~~~L~-~~~~eYc~-~I~~~~~WGG~IEL~iLS~~~~~~I~v~d~~~~  138 (180)
                      ..+|.+++.+++.|++.|.|++-| +++++||+ +|+.+..|||+|||.|||++|+++|.|+....+
T Consensus       301 ~~lRllts~~i~~~~d~f~pFi~~~~~v~~yc~~~ve~~~~e~d~l~I~ALa~al~v~I~V~yld~~  367 (399)
T 4ddg_A          301 VYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRG  367 (399)
T ss_dssp             HHHHHHHHHHHHHTHHHHGGGSSSSCCHHHHHHHHTSSTTCCBCHHHHHHHHHHHTCCCEEEECSCC
T ss_pred             HHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHhceeHHhhCcHHHHHHHHHHcCCcEEEEEcCCC
Confidence            369999999999999999995554 68999999 999999999999999999999999999976543

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}

Probab=87.28  E-value=0.23  Score=40.78  Aligned_cols=20  Identities=40%  Similarity=0.544  Sum_probs=15.6

Q ss_pred             Ceeecc-cccceeeccCCCCC
Q 030263            1 MLIYDG-LHYDALAISPFEGA   20 (180)
Q Consensus         1 ~liYsG-IHYD~l~l~~~~~~   20 (180)
                      +|+|+| +|||+|...+....
T Consensus       145 ~L~Y~g~~HYdSL~~~~d~~~  165 (219)
T 3phu_A          145 NLLHSGQTHFDALRILPQFET  165 (219)
T ss_dssp             EEEEETTTEEEEEEECTTTCC
T ss_pred             EEEECCCcCchhheECCCCCC
Confidence            378999 99999988765433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	180
d1tffa_	228	Ubiquitin thiolesterase protein OTUB2 (Otubain-2)	98.96

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=3.7e-10  Score=91.40  Aligned_cols=64  Identities=8%  Similarity=0.075  Sum_probs=56.8

Q ss_pred             chhHHHHHHHHhccccccccccC-CChHHHHHh-cCCCCCcccHHHHHHHHhHhCceEEEEEcCCC
Q 030263           75 IGQKAIAATVASDTVKHSEAFIG-KSNQDYCSW-IQDPEKWGGAIELSILADYYGSEIAAYDIQTT  138 (180)
Q Consensus        75 ~lr~~vA~~I~~~p~~y~~~~L~-~~~~eYc~~-I~~~~~WGG~IEL~iLS~~~~~~I~v~d~~~~  138 (180)
                      -+|.+++.+++.|++.|.+++.+ .++++||.| |+.+..|||++||.|||++|+++|.|+.+...
T Consensus       128 ~lR~l~s~~i~~~~~~y~~Fi~~~~~~~~yc~~~v~~~~~e~d~ieI~aLa~al~v~I~V~~~d~~  193 (228)
T d1tffa_         128 FLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEM  193 (228)
T ss_dssp             HHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC--
T ss_pred             HHHHHHHHHHHHCHHHHHhHhcCCccHHHHHHHHHccccccCCcHHHHHHHHHhCCCEEEEEecCC
Confidence            48999999999999999996654 689999987 99999999999999999999999999987543