Citrus Sinensis ID: 030289

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180
Protein Sequence
MGMVISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAKG
Secondary Structure (PSIPRED)
cccHHHHHHHHccccEEEEEEEEcccccHHHHHHHHcccccEEccccccEEEcEEEEccEEEEEEEcccccccccccccccccccEEEEEEEcccccHHHHHHHHHHHHcccccccccEEEEEEccccccccccHHHHHHHHcccccccccEEEEEccccccccHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHcccEEEEEEEccccccHHHHHHHccccccccccccccEEEEEccEccEEEEEEEEcccHHHHHHHHHHcccccEEEEEEEccccccHHHHHHHHHHHHccHHHcccEEEEEEEcccccccccHHHHHHHccHHHcccccEEEEEcEccccEcHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MGMVISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFtvwdvggqdkirplwrhyfqnthglifvvdsndreriGEAKDELHRMLSEDELREAVLLVFAnkqdlpnamsvSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWlssnvsakg
Flexible Loop (DISEMBL)
MGMVISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANkqdlpnamsvSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAKG
Low Complexity Region (SEG)
MGMVISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAKG
Disordered region (IsUnstruct)
***VISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSN*******************ELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWL********
Disordered Region (DISOPRED)
*GMV**RLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSA**
Disordered Region (DISEMBL)
MGMVISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAKG
Disordered Region (DISPRO)
*GMVISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSA**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGMVISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAKG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	180	2.2.26 [Sep-21-2011]
O48649	181	ADP-ribosylation factor 1	N/A	no	1.0	0.994	0.839	3e-89
Q06396	181	ADP-ribosylation factor 1	yes	no	1.0	0.994	0.839	3e-89
P51823	181	ADP-ribosylation factor 2	yes	no	1.0	0.994	0.839	6e-89
P0DH91	181	ADP-ribosylation factor 2	yes	no	1.0	0.994	0.834	2e-88
Q9LQC8	181	ADP-ribosylation factor 2	yes	no	1.0	0.994	0.834	2e-88
P36397	181	ADP-ribosylation factor 1	yes	no	1.0	0.994	0.834	3e-88
O48920	181	ADP-ribosylation factor O	N/A	no	1.0	0.994	0.828	4e-88
P49076	181	ADP-ribosylation factor O	N/A	no	0.994	0.988	0.833	6e-88
P51822	181	ADP-ribosylation factor 1	N/A	no	0.994	0.988	0.833	6e-88
P51821	181	ADP-ribosylation factor 1	N/A	no	0.994	0.988	0.838	1e-87

>sp|O48649|ARF1_SALBA ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 PE=2 SV=3

 Score =  327 bits (838), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 152/181 (83%), Positives = 171/181 (94%), Gaps = 1/181 (0%)

Query: 1   MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 59
           MG+  ++L   LF++KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGLSFTKLLGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 60  VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV 119
           +SFTVWDVGGQDKIRPLWRHYFQNT GLIFVVDSNDR+R+GEA+DELHRML+EDELR+AV
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVGEARDELHRMLNEDELRDAV 120

Query: 120 LLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
           LLVFANKQDLPNAM+ +E+TDKLGLHSLRQR WYIQ+ CATSG+GLYEGLDWLS+N+S+K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNISSK 180

Query: 180 G 180
            
Sbjct: 181 A 181

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.
Salix bakko (taxid: 72444)

>sp|Q06396|ARF1_ORYSJ ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica GN=Os01g0813400 PE=2 SV=3

 Score =  327 bits (837), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 152/181 (83%), Positives = 170/181 (93%), Gaps = 1/181 (0%)

Query: 1   MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 59
           MG+  ++L   LFA+KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 60  VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV 119
           +SFTVWDVGGQDKIRPLWRHYFQNT GLIFVVDSNDRER+ EA+DELHRML+EDELR+AV
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAV 120

Query: 120 LLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
           LLVFANKQDLPNAM+ +E+TDKLGLHSLRQR WYIQ+ CATSG+GLYEGLDWLS+N+++K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180

Query: 180 G 180
            
Sbjct: 181 A 181

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P51823|ARF2_ORYSJ ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica GN=ARF PE=2 SV=2

 Score =  326 bits (835), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 152/181 (83%), Positives = 169/181 (93%), Gaps = 1/181 (0%)

Query: 1   MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 59
           MG+  ++L   LFA+KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 60  VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV 119
           +SFTVWDVGGQDKIRPLWRHYFQNT GLIFVVDSNDRER+ EA+DELHRML+EDELR+AV
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAV 120

Query: 120 LLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
           LLVFANKQDLPNAM+ +E+TDKLGLHSLRQR WYIQ+ CATSG+GLYEGLDWLS+N++ K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180

Query: 180 G 180
            
Sbjct: 181 A 181

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P0DH91|ARF2B_ARATH ADP-ribosylation factor 2-B OS=Arabidopsis thaliana GN=ARF2-B PE=2 SV=1

 Score =  324 bits (830), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 151/181 (83%), Positives = 169/181 (93%), Gaps = 1/181 (0%)

Query: 1   MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 59
           MG+  ++L   LFA+KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 60  VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV 119
           +SFTVWDVGGQDKIRPLWRHYFQNT GLIFVVDSNDR+R+ EA+DELHRML+EDELR+AV
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query: 120 LLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
           LLVFANKQDLPNAM+ +E+TDKLGLHSLRQR WYIQ+ CATSG+GLYEGLDWLS+N++ K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAGK 180

Query: 180 G 180
            
Sbjct: 181 A 181

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQC8|ARF2A_ARATH ADP-ribosylation factor 2-A OS=Arabidopsis thaliana GN=ARF2-A PE=2 SV=2

 Score =  324 bits (830), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 151/181 (83%), Positives = 169/181 (93%), Gaps = 1/181 (0%)

Query: 1   MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 59
           MG+  ++L   LFA+KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 60  VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV 119
           +SFTVWDVGGQDKIRPLWRHYFQNT GLIFVVDSNDR+R+ EA+DELHRML+EDELR+AV
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query: 120 LLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
           LLVFANKQDLPNAM+ +E+TDKLGLHSLRQR WYIQ+ CATSG+GLYEGLDWLS+N++ K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAGK 180

Query: 180 G 180
            
Sbjct: 181 A 181

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Arabidopsis thaliana (taxid: 3702)

>sp|P36397|ARF1_ARATH ADP-ribosylation factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2

 Score =  323 bits (829), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 151/181 (83%), Positives = 169/181 (93%), Gaps = 1/181 (0%)

Query: 1   MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 59
           MG+   +L   LFA+KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGLSFGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 60  VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV 119
           +SFTVWDVGGQDKIRPLWRHYFQNT GLIFVVDSNDR+R+ EA+DELHRML+EDELR+AV
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query: 120 LLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
           LLVFANKQDLPNAM+ +E+TDKLGLHSLRQR WYIQ+ CATSG+GLYEGLDWLS+N+++K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180

Query: 180 G 180
            
Sbjct: 181 A 181

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; required for the sequence-specific vacuolar sorting route to the lytic vacuole, for the ER-to-Golgi transport and for the Golgi-derived transport to the plasma membrane. Involved in the recruitment of COPI and GDAP1 to membranes.

Arabidopsis thaliana (taxid: 3702)

>sp|O48920|ARF_VIGUN ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3

 Score =  323 bits (828), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 150/181 (82%), Positives = 170/181 (93%), Gaps = 1/181 (0%)

Query: 1   MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 59
           MG+  ++L   LFA+KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 60  VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV 119
           +SFTVWDVGGQDKIRPLWRHYFQNT GLIFVVDSNDR+R+ EA+DELHRML+EDELR+AV
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query: 120 LLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
           LLVFANKQDLPNAM+ +E+TDKLGLHSLRQR WYIQ+ CATSG+GLYEGL+WLS+N+++K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLEWLSNNIASK 180

Query: 180 G 180
            
Sbjct: 181 A 181

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Vigna unguiculata (taxid: 3917)

>sp|P49076|ARF_MAIZE ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 SV=2

 Score =  322 bits (826), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 150/180 (83%), Positives = 169/180 (93%), Gaps = 1/180 (0%)

Query: 1   MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 59
           MG+  ++L   LFA+KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 60  VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV 119
           +SFTVWDVGGQDKIRPLWRHYFQNT GLIFVVDSNDR+R+ EA+DELHRML+EDELR+AV
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query: 120 LLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
           LLVFANKQDLPNAM+ +E+TDKLGL+SLRQR WYIQ+ CAT+G+GLYEGLDWLSSN++ K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLNSLRQRHWYIQSTCATTGEGLYEGLDWLSSNIATK 180

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Zea mays (taxid: 4577)

>sp|P51822|ARF1_DAUCA ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1 PE=2 SV=2

 Score =  322 bits (826), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 150/180 (83%), Positives = 169/180 (93%), Gaps = 1/180 (0%)

Query: 1   MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 59
           MG+  ++L   LFA+KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 60  VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV 119
           +SFTVWDVGGQDKIRPLWRHYFQNT GLIFVVDSNDR+R+ EA+DELHRML+EDELR+AV
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query: 120 LLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
           LLVFANKQDLPNAM+ +E+ DKLGLHSLRQR WYIQ+ CATSG+GLYEGLDWLS+N+++K
Sbjct: 121 LLVFANKQDLPNAMNAAEIIDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Daucus carota (taxid: 4039)

>sp|P51821|ARF1_CHLRE ADP-ribosylation factor 1 OS=Chlamydomonas reinhardtii GN=ARF1 PE=2 SV=2

 Score =  322 bits (824), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 151/180 (83%), Positives = 168/180 (93%), Gaps = 1/180 (0%)

Query: 1   MGMVISR-LKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 59
           MG+  ++ L  LF +KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGLRFTKALSRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 60  VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV 119
           +SFTVWDVGGQDKIRPLWRHYFQNT GLIFVVDSNDRER+ EA+DELHRML+EDELR+AV
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAV 120

Query: 120 LLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
           LLVFANKQDLPNAM+ +E+TDKLGLHSLRQR WYIQ+ CATSG+GLYEGLDWLS+N++ K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNLANK 180

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Chlamydomonas reinhardtii (taxid: 3055)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
224084398	181	predicted protein [Populus trichocarpa]	1.0	0.994	0.922	6e-95
147810961	182	hypothetical protein VITISV_038875 [Viti	1.0	0.989	0.917	7e-94
255567885	182	ADP-ribosylation factor, arf, putative [	1.0	0.989	0.917	1e-93
296087398	211	unnamed protein product [Vitis vinifera]	1.0	0.853	0.911	3e-93
225438827	182	PREDICTED: ADP-ribosylation factor 1 [Vi	1.0	0.989	0.911	5e-93
357482765	182	ADP-ribosylation factor [Medicago trunca	0.994	0.983	0.883	1e-90
449448292	181	PREDICTED: ADP-ribosylation factor 1-lik	1.0	0.994	0.878	5e-90
449485432	181	PREDICTED: ADP-ribosylation factor 1-lik	1.0	0.994	0.872	2e-89
384245653	181	ADP-ribosylation factor 1 [Coccomyxa sub	1.0	0.994	0.850	2e-88
351721791	182	uncharacterized protein LOC100305887 [Gl	0.994	0.983	0.866	2e-88

>gi|224084398|ref|XP_002307284.1| predicted protein [Populus trichocarpa] gi|222856733|gb|EEE94280.1| predicted protein [Populus trichocarpa]

 Score =  351 bits (901), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 167/181 (92%), Positives = 175/181 (96%), Gaps = 1/181 (0%)

Query: 1   MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 59
           MGM ISRL K+LFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGMAISRLVKLLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 60  VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV 119
           VSFTVWDVGGQDKIRPLWRHYFQNT GLIFVVDSNDRER+ EA+DELHRMLSEDELR+A 
Sbjct: 61  VSFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVTEARDELHRMLSEDELRDAT 120

Query: 120 LLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
           LL+FANKQDLPNAMSVSE+TDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSN+S+K
Sbjct: 121 LLIFANKQDLPNAMSVSEITDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNISSK 180

Query: 180 G 180
            
Sbjct: 181 A 181

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147810961|emb|CAN59803.1| hypothetical protein VITISV_038875 [Vitis vinifera]

 Score =  348 bits (892), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 166/181 (91%), Positives = 175/181 (96%), Gaps = 1/181 (0%)

Query: 1   MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 59
           MG+VISRL KMLFA++EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGLVISRLLKMLFAKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 60  VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV 119
           VSFTVWDVGGQDKIRPLWRHYFQNT GLIFVVDSNDRERI EAKDELHRMLSEDELR+A 
Sbjct: 61  VSFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERILEAKDELHRMLSEDELRDAT 120

Query: 120 LLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
           LLVFANKQDLPNAMSVSE+TDK+GLHSLRQRRWYIQ+ CATSGQGLYEGLDWLSSN+S+K
Sbjct: 121 LLVFANKQDLPNAMSVSEITDKMGLHSLRQRRWYIQSTCATSGQGLYEGLDWLSSNISSK 180

Query: 180 G 180
            
Sbjct: 181 A 181

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567885|ref|XP_002524920.1| ADP-ribosylation factor, arf, putative [Ricinus communis] gi|223535755|gb|EEF37417.1| ADP-ribosylation factor, arf, putative [Ricinus communis]

 Score =  347 bits (890), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 166/181 (91%), Positives = 173/181 (95%), Gaps = 1/181 (0%)

Query: 1   MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 59
           MGM ISRL K+LFA+KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGMAISRLIKLLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 60  VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV 119
           VSFTVWDVGGQDKIRPLWRHYFQNT GLIFVVDSNDRERI EA+DEL RMLSEDELR+A 
Sbjct: 61  VSFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERISEARDELQRMLSEDELRDAT 120

Query: 120 LLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
           LLVFANKQDLPNAM+VSEVTDKLGLHSLRQRRWYIQA CATSGQGLYEGLDWLSSN+S+K
Sbjct: 121 LLVFANKQDLPNAMTVSEVTDKLGLHSLRQRRWYIQATCATSGQGLYEGLDWLSSNISSK 180

Query: 180 G 180
            
Sbjct: 181 A 181

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087398|emb|CBI33772.3| unnamed protein product [Vitis vinifera]

 Score =  345 bits (886), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 165/181 (91%), Positives = 174/181 (96%), Gaps = 1/181 (0%)

Query: 1   MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 59
           MG+VISRL KMLFA++EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 30  MGLVISRLLKMLFAKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 89

Query: 60  VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV 119
           VSFTVWDVGGQ KIRPLWRHYFQNT GLIFVVDSNDRERI EAKDELHRMLSEDELR+A 
Sbjct: 90  VSFTVWDVGGQHKIRPLWRHYFQNTQGLIFVVDSNDRERILEAKDELHRMLSEDELRDAT 149

Query: 120 LLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
           LLVFANKQDLPNAMSVSE+TDK+GLHSLRQRRWYIQ+ CATSGQGLYEGLDWLSSN+S+K
Sbjct: 150 LLVFANKQDLPNAMSVSEITDKMGLHSLRQRRWYIQSTCATSGQGLYEGLDWLSSNISSK 209

Query: 180 G 180
            
Sbjct: 210 A 210

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438827|ref|XP_002278476.1| PREDICTED: ADP-ribosylation factor 1 [Vitis vinifera]

 Score =  345 bits (884), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 165/181 (91%), Positives = 174/181 (96%), Gaps = 1/181 (0%)

Query: 1   MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 59
           MG+VISRL KMLFA++EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGLVISRLLKMLFAKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 60  VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV 119
           VSFTVWDVGGQ KIRPLWRHYFQNT GLIFVVDSNDRERI EAKDELHRMLSEDELR+A 
Sbjct: 61  VSFTVWDVGGQHKIRPLWRHYFQNTQGLIFVVDSNDRERILEAKDELHRMLSEDELRDAT 120

Query: 120 LLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
           LLVFANKQDLPNAMSVSE+TDK+GLHSLRQRRWYIQ+ CATSGQGLYEGLDWLSSN+S+K
Sbjct: 121 LLVFANKQDLPNAMSVSEITDKMGLHSLRQRRWYIQSTCATSGQGLYEGLDWLSSNISSK 180

Query: 180 G 180
            
Sbjct: 181 A 181

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482765|ref|XP_003611669.1| ADP-ribosylation factor [Medicago truncatula] gi|355513004|gb|AES94627.1| ADP-ribosylation factor [Medicago truncatula] gi|388506068|gb|AFK41100.1| unknown [Medicago truncatula]

 Score =  337 bits (865), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 159/180 (88%), Positives = 172/180 (95%), Gaps = 1/180 (0%)

Query: 1   MGMVISR-LKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 59
           MG+ +SR +++ +A+KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGLTVSRIMRLFYAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 60  VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV 119
           VSFTVWDVGGQDKIRPLWRHYFQNT GLIFVVDSNDRERI EA+DELHRMLSEDELR+A 
Sbjct: 61  VSFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERILEARDELHRMLSEDELRDAT 120

Query: 120 LLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
           LLVFANKQDLPNA+SVSE+TDKLGLHSLRQRRWYIQ+ CATSGQGLYEGLDWLSSN+S K
Sbjct: 121 LLVFANKQDLPNALSVSEITDKLGLHSLRQRRWYIQSTCATSGQGLYEGLDWLSSNISNK 180

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448292|ref|XP_004141900.1| PREDICTED: ADP-ribosylation factor 1-like [Cucumis sativus]

 Score =  335 bits (858), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 159/181 (87%), Positives = 170/181 (93%), Gaps = 1/181 (0%)

Query: 1   MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 59
           MG+ ISRL +MLFA+KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGVAISRLVRMLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 60  VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV 119
           VSFTVWDVGGQDKIRPLWRHYFQNT GLIFVVDSND+ERI EA+DELHRMLSE EL +A 
Sbjct: 61  VSFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDKERISEARDELHRMLSEHELVDAT 120

Query: 120 LLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
           +LVFANKQDLPNAM+V+E+TDKLGLHSLR RRWYIQA CATSGQGLYEGLDWLSSN+S K
Sbjct: 121 VLVFANKQDLPNAMTVAEITDKLGLHSLRNRRWYIQATCATSGQGLYEGLDWLSSNISTK 180

Query: 180 G 180
            
Sbjct: 181 A 181

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449485432|ref|XP_004157166.1| PREDICTED: ADP-ribosylation factor 1-like [Cucumis sativus]

 Score =  333 bits (854), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 158/181 (87%), Positives = 169/181 (93%), Gaps = 1/181 (0%)

Query: 1   MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 59
           MG+ ISRL +MLFA+KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPT GFNVETVEYKN
Sbjct: 1   MGVAISRLVRMLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTTGFNVETVEYKN 60

Query: 60  VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV 119
           VSFTVWDVGGQDKIRPLWRHYFQNT GLIFVVDSND+ERI EA+DELHRMLSE EL +A 
Sbjct: 61  VSFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDKERISEARDELHRMLSEHELVDAT 120

Query: 120 LLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
           +LVFANKQDLPNAM+V+E+TDKLGLHSLR RRWYIQA CATSGQGLYEGLDWLSSN+S K
Sbjct: 121 VLVFANKQDLPNAMTVAEITDKLGLHSLRNRRWYIQATCATSGQGLYEGLDWLSSNISTK 180

Query: 180 G 180
            
Sbjct: 181 A 181

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|384245653|gb|EIE19146.1| ADP-ribosylation factor 1 [Coccomyxa subellipsoidea C-169]

 Score =  330 bits (845), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 154/181 (85%), Positives = 171/181 (94%), Gaps = 1/181 (0%)

Query: 1   MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 59
           MG+  ++L   LF++KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGLAFTKLFARLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 60  VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV 119
           +SFTVWDVGGQDKIRPLWRHYFQNT GLIFVVDSNDR+RIGEA+DELHRML+EDELR+AV
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIGEARDELHRMLNEDELRDAV 120

Query: 120 LLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
           LLVFANKQDLPNAM+ +E+TDKLGLHSLRQR WYIQ+ CATSG+GLYEGLDWLSSN++ K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSSNIANK 180

Query: 180 G 180
           G
Sbjct: 181 G 181

Source: Coccomyxa subellipsoidea C-169

Species: Coccomyxa subellipsoidea

Genus: Coccomyxa

Family: Coccomyxaceae

Class: Trebouxiophyceae

Phylum: Chlorophyta

Superkingdom: Eukaryota

>gi|351721791|ref|NP_001238245.1| uncharacterized protein LOC100305887 [Glycine max] gi|255626887|gb|ACU13788.1| unknown [Glycine max]

 Score =  330 bits (845), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 156/180 (86%), Positives = 170/180 (94%), Gaps = 1/180 (0%)

Query: 1   MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 59
           MG+ +SRL ++ +ARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGLTVSRLLRLFYARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 60  VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV 119
           VSFTVWDVGGQDKIRPLWRHYFQNT GLIFVVDSNDRERI EA+DELHRMLSEDELR+A 
Sbjct: 61  VSFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERILEARDELHRMLSEDELRDAT 120

Query: 120 LLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
           +LVFANKQDLPNA+SV+E+TDKLGLHSLR RRWYIQ  CATSGQGLYEGLDWLSS+++ K
Sbjct: 121 VLVFANKQDLPNALSVAEITDKLGLHSLRLRRWYIQPTCATSGQGLYEGLDWLSSHITNK 180

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
UNIPROTKB|P51823	181	ARF "ADP-ribosylation factor 2	0.994	0.988	0.844	6.6e-81
TAIR|locus:2019948	181	ARFA1F "ADP-ribosylation facto	0.994	0.988	0.838	1.1e-80
TAIR|locus:2028926	181	ARF1 "ADP-ribosylation factor	0.994	0.988	0.838	1.4e-80
TAIR|locus:2026780	181	ARFA1D [Arabidopsis thaliana (	0.994	0.988	0.838	1.4e-80
TAIR|locus:2065114	181	ARF1A1C [Arabidopsis thaliana	0.994	0.988	0.838	1.4e-80
TAIR|locus:2222677	188	ARFA1B "ADP-ribosylation facto	0.994	0.952	0.838	1.8e-80
TAIR|locus:2098063	181	ARFA1E "ADP-ribosylation facto	0.994	0.988	0.838	2.9e-80
FB|FBgn0010348	182	Arf79F "ADP ribosylation facto	0.977	0.967	0.847	2.3e-78
UNIPROTKB|J9NWP6	181	LOC480487 "Uncharacterized pro	0.994	0.988	0.827	3e-78
UNIPROTKB|P84081	181	ARF2 "ADP-ribosylation factor	0.977	0.972	0.841	3.8e-78

UNIPROTKB|P51823 ARF "ADP-ribosylation factor 2" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 812 (290.9 bits), Expect = 6.6e-81, P = 6.6e-81
 Identities = 152/180 (84%), Positives = 169/180 (93%)

Query:     1 MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 59
             MG+  ++L   LFA+KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct:     1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query:    60 VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV 119
             +SFTVWDVGGQDKIRPLWRHYFQNT GLIFVVDSNDRER+ EA+DELHRML+EDELR+AV
Sbjct:    61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAV 120

Query:   120 LLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
             LLVFANKQDLPNAM+ +E+TDKLGLHSLRQR WYIQ+ CATSG+GLYEGLDWLS+N++ K
Sbjct:   121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180

GO:0006471 "protein ADP-ribosylation" evidence=IEP;ISS

GO:0006886 "intracellular protein transport" evidence=IEP;ISS

GO:0016192 "vesicle-mediated transport" evidence=IEP;ISS

TAIR|locus:2019948 ARFA1F "ADP-ribosylation factor A1F" [Arabidopsis thaliana (taxid:3702)]

 Score = 810 (290.2 bits), Expect = 1.1e-80, P = 1.1e-80
 Identities = 151/180 (83%), Positives = 170/180 (94%)

Query:     1 MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 59
             MG+  ++L   LFA+KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct:     1 MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query:    60 VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV 119
             +SFTVWDVGGQDKIRPLWRHYFQNT GLIFVVDSNDR+R+ EA+DELHRML+EDELR+AV
Sbjct:    61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query:   120 LLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
             LLVFANKQDLPNAM+ +E+TDKLGLHSLRQR WYIQ+ CATSG+GLYEGLDWLS+N+++K
Sbjct:   121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180

GO:0005525 "GTP binding" evidence=IEA;ISS;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016004 "phospholipase activator activity" evidence=TAS

GO:0005507 "copper ion binding" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2028926 ARF1 "ADP-ribosylation factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
 Identities = 151/180 (83%), Positives = 169/180 (93%)

Query:     1 MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 59
             MG+  ++L   LFA+KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct:     1 MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query:    60 VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV 119
             +SFTVWDVGGQDKIRPLWRHYFQNT GLIFVVDSNDR+R+ EA+DELHRML+EDELR+AV
Sbjct:    61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query:   120 LLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
             LLVFANKQDLPNAM+ +E+TDKLGLHSLRQR WYIQ+ CATSG+GLYEGLDWLS+N++ K
Sbjct:   121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAGK 180

GO:0005525 "GTP binding" evidence=IEA;ISS;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0016004 "phospholipase activator activity" evidence=TAS

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=RCA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2026780 ARFA1D [Arabidopsis thaliana (taxid:3702)]

 Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
 Identities = 151/180 (83%), Positives = 169/180 (93%)

Query:     1 MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 59
             MG+  ++L   LFA+KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct:     1 MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query:    60 VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV 119
             +SFTVWDVGGQDKIRPLWRHYFQNT GLIFVVDSNDR+R+ EA+DELHRML+EDELR+AV
Sbjct:    61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query:   120 LLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
             LLVFANKQDLPNAM+ +E+TDKLGLHSLRQR WYIQ+ CATSG+GLYEGLDWLS+N++ K
Sbjct:   121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAGK 180

GO:0005525 "GTP binding" evidence=IEA;ISS;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0016004 "phospholipase activator activity" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2065114 ARF1A1C [Arabidopsis thaliana (taxid:3702)]

 Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
 Identities = 151/180 (83%), Positives = 169/180 (93%)

Query:     1 MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 59
             MG+   +L   LFA+KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct:     1 MGLSFGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query:    60 VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV 119
             +SFTVWDVGGQDKIRPLWRHYFQNT GLIFVVDSNDR+R+ EA+DELHRML+EDELR+AV
Sbjct:    61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query:   120 LLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
             LLVFANKQDLPNAM+ +E+TDKLGLHSLRQR WYIQ+ CATSG+GLYEGLDWLS+N+++K
Sbjct:   121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180

GO:0005525 "GTP binding" evidence=IEA;ISS;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0005798 "Golgi-associated vesicle" evidence=IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0016004 "phospholipase activator activity" evidence=TAS

GO:0005829 "cytosol" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2222677 ARFA1B "ADP-ribosylation factor A1B" [Arabidopsis thaliana (taxid:3702)]

 Score = 808 (289.5 bits), Expect = 1.8e-80, P = 1.8e-80
 Identities = 151/180 (83%), Positives = 169/180 (93%)

Query:     1 MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 59
             MG+  ++L   LFA+KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct:     1 MGLNFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query:    60 VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV 119
             +SFTVWDVGGQDKIRPLWRHYFQNT GLIFVVDSNDR+R+ EA+DELHRML+EDELR+AV
Sbjct:    61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query:   120 LLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
             LLVFANKQDLPNAM+ +E+TDKLGLHSLRQR WYIQ+ CATSG+GLYEGLDWLS+N++ K
Sbjct:   121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180

GO:0005525 "GTP binding" evidence=IEA;ISS;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0016004 "phospholipase activator activity" evidence=TAS

GO:0005829 "cytosol" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2098063 ARFA1E "ADP-ribosylation factor A1E" [Arabidopsis thaliana (taxid:3702)]

 Score = 806 (288.8 bits), Expect = 2.9e-80, P = 2.9e-80
 Identities = 151/180 (83%), Positives = 168/180 (93%)

Query:     1 MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 59
             MG+   +L   LFA+KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct:     1 MGLSFGKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query:    60 VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV 119
             +SFTVWDVGGQDKIRPLWRHYFQNT GLIFVVDSNDR+R+ EA+DELHRML+EDELR+AV
Sbjct:    61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query:   120 LLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
             LLVFANKQDLPNAM+ +E+TDKLGLHSLRQR WYIQ+ CATSG+GLYEGLDWLS+N++ K
Sbjct:   121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180

GO:0005525 "GTP binding" evidence=IEA;ISS;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0016004 "phospholipase activator activity" evidence=TAS

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

FB|FBgn0010348 Arf79F "ADP ribosylation factor at 79F" [Drosophila melanogaster (taxid:7227)]

 Score = 788 (282.4 bits), Expect = 2.3e-78, P = 2.3e-78
 Identities = 150/177 (84%), Positives = 163/177 (92%)

Query:     1 MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 59
             MG V + L K LF +KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct:     1 MGNVFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query:    60 VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV 119
             +SFTVWDVGGQDKIRPLWRHYFQNT GLIFVVDSNDRERIGEA++EL RML+EDELR+AV
Sbjct:    61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLAEDELRDAV 120

Query:   120 LLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
             LL+FANKQDLPNAM+ +E+TDKLGLHSLR R WYIQA CATSG GLYEGLDWLS+ +
Sbjct:   121 LLIFANKQDLPNAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQL 177

GO:0006471 "protein ADP-ribosylation" evidence=ISS;NAS

GO:0005525 "GTP binding" evidence=ISS;NAS

GO:0016197 "endosomal transport" evidence=TAS

GO:0007269 "neurotransmitter secretion" evidence=TAS

GO:0048488 "synaptic vesicle endocytosis" evidence=TAS

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0007155 "cell adhesion" evidence=IMP

GO:0003924 "GTPase activity" evidence=ISS

GO:0010883 "regulation of lipid storage" evidence=IDA

GO:0006892 "post-Golgi vesicle-mediated transport" evidence=IMP

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0048749 "compound eye development" evidence=IMP

GO:0032011 "ARF protein signal transduction" evidence=IGI

GO:0005795 "Golgi stack" evidence=IDA

UNIPROTKB|J9NWP6 LOC480487 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 787 (282.1 bits), Expect = 3.0e-78, P = 3.0e-78
 Identities = 149/180 (82%), Positives = 163/180 (90%)

Query:     1 MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 59
             MG V  +L K LF +KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct:     1 MGNVFEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query:    60 VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV 119
             +SFTVWDVGGQDKIRPLWRHYFQNT GLIFVVDSNDRER+ EA++EL RML+EDELR+AV
Sbjct:    61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAV 120

Query:   120 LLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
             LLVF NKQDLPNAM+ +E+TDKLGLHSLRQR WYIQA CATSG GLYEGLDWLS+ +  +
Sbjct:   121 LLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKTQ 180

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|P84081 ARF2 "ADP-ribosylation factor 2" [Bos taurus (taxid:9913)]

 Score = 786 (281.7 bits), Expect = 3.8e-78, P = 3.8e-78
 Identities = 149/177 (84%), Positives = 162/177 (91%)

Query:     1 MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 59
             MG V  +L K LF +KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct:     1 MGNVFEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query:    60 VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV 119
             +SFTVWDVGGQDKIRPLWRHYFQNT GLIFVVDSNDRER+ EA++EL RML+EDELR+AV
Sbjct:    61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAV 120

Query:   120 LLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
             LLVF NKQDLPNAM+ +E+TDKLGLHSLRQR WYIQA CATSG GLYEGLDWLS+ +
Sbjct:   121 LLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQL 177

GO:0005794 "Golgi apparatus" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O48920	ARF_VIGUN	No assigned EC number	0.8287	1.0	0.9944	N/A	no
P51644	ARF4_XENLA	No assigned EC number	0.8	0.9944	0.9944	N/A	no
O00909	ARF1_DICDI	No assigned EC number	0.8044	0.9888	0.9780	yes	no
P51643	ARF1_XENLA	No assigned EC number	0.8361	0.9777	0.9723	N/A	no
P91924	ARF_DUGJA	No assigned EC number	0.8166	0.9944	0.9781	N/A	no
P36397	ARF1_ARATH	No assigned EC number	0.8342	1.0	0.9944	yes	no
Q8BSL7	ARF2_MOUSE	No assigned EC number	0.8418	0.9777	0.9723	yes	no
Q7RVM2	ARF_NEUCR	No assigned EC number	0.8165	0.9388	0.9135	N/A	no
P61210	ARF1_LOCMI	No assigned EC number	0.8474	0.9777	0.9670	N/A	no
P84082	ARF2_RAT	No assigned EC number	0.8418	0.9777	0.9723	yes	no
P84083	ARF5_RAT	No assigned EC number	0.7833	0.9944	0.9944	no	no
P84080	ARF1_BOVIN	No assigned EC number	0.8361	0.9777	0.9723	yes	no
P84081	ARF2_BOVIN	No assigned EC number	0.8418	0.9777	0.9723	yes	no
Q5R5P7	ARF3_PONAB	No assigned EC number	0.8430	0.9555	0.9502	yes	no
Q10943	ARF12_CAEEL	No assigned EC number	0.8277	0.9944	0.9889	yes	no
P84084	ARF5_MOUSE	No assigned EC number	0.7833	0.9944	0.9944	no	no
P84085	ARF5_HUMAN	No assigned EC number	0.7833	0.9944	0.9944	no	no
P0DH91	ARF2B_ARATH	No assigned EC number	0.8342	1.0	0.9944	yes	no
P51823	ARF2_ORYSJ	No assigned EC number	0.8397	1.0	0.9944	yes	no
P51821	ARF1_CHLRE	No assigned EC number	0.8388	0.9944	0.9889	N/A	no
P51824	ARF1_SOLTU	No assigned EC number	0.8418	0.9777	0.8934	N/A	no
P84077	ARF1_HUMAN	No assigned EC number	0.8361	0.9777	0.9723	yes	no
P36579	ARF1_SCHPO	No assigned EC number	0.8248	0.9777	0.9777	yes	no
P84079	ARF1_RAT	No assigned EC number	0.8361	0.9777	0.9723	yes	no
P84078	ARF1_MOUSE	No assigned EC number	0.8361	0.9777	0.9723	yes	no
P18085	ARF4_HUMAN	No assigned EC number	0.7888	0.9944	0.9944	no	no
Q9LQC8	ARF2A_ARATH	No assigned EC number	0.8342	1.0	0.9944	yes	no
P0CM17	ARF_CRYNB	No assigned EC number	0.8388	0.9944	0.9835	N/A	no
P0CM16	ARF_CRYNJ	No assigned EC number	0.8388	0.9944	0.9835	yes	no
P22274	ARF_CANAL	No assigned EC number	0.7740	0.9777	0.9832	N/A	no
Q06396	ARF1_ORYSJ	No assigned EC number	0.8397	1.0	0.9944	yes	no
P40945	ARF2_DROME	No assigned EC number	0.7833	0.9944	0.9944	no	no
P61205	ARF3_MOUSE	No assigned EC number	0.8430	0.9555	0.9502	no	no
P61204	ARF3_HUMAN	No assigned EC number	0.8430	0.9555	0.9502	yes	no
P61207	ARF3_TAKRU	No assigned EC number	0.8430	0.9555	0.9502	N/A	no
P61206	ARF3_RAT	No assigned EC number	0.8430	0.9555	0.9502	no	no
O48649	ARF1_SALBA	No assigned EC number	0.8397	1.0	0.9944	N/A	no
Q61LA8	ARF12_CAEBR	No assigned EC number	0.8333	0.9944	0.9889	N/A	no
Q5RCF1	ARF4_PONAB	No assigned EC number	0.7888	0.9944	0.9944	no	no
P61209	ARF1_DROME	No assigned EC number	0.8474	0.9777	0.9670	yes	no
P49076	ARF_MAIZE	No assigned EC number	0.8333	0.9944	0.9889	N/A	no
Q4R5P2	ARF1_MACFA	No assigned EC number	0.8361	0.9777	0.9723	N/A	no
Q75A26	ARF_ASHGO	No assigned EC number	0.7909	0.9777	0.9723	yes	no
Q5E9I6	ARF3_BOVIN	No assigned EC number	0.8430	0.9555	0.9502	no	no
P49702	ARF5_CHICK	No assigned EC number	0.7722	0.9944	0.9944	no	no
P51822	ARF1_DAUCA	No assigned EC number	0.8333	0.9944	0.9889	N/A	no
Q3SZF2	ARF4_BOVIN	No assigned EC number	0.8	0.9944	0.9944	no	no
P61751	ARF4_RAT	No assigned EC number	0.7888	0.9944	0.9944	no	no
P61750	ARF4_MOUSE	No assigned EC number	0.7888	0.9944	0.9944	no	no
O23778	ARF1_CATRO	No assigned EC number	0.8121	1.0	0.9944	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	180
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	1e-129
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	1e-125
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	1e-124
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	1e-114
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	1e-109
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	1e-105
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	1e-104
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	7e-92
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	4e-85
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	1e-70
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	2e-69
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	3e-69
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	1e-67
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	4e-62
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	8e-56
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	2e-48
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	1e-44
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	2e-40
cd04162	164	cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp	2e-38
cd04161	167	cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A	1e-34
smart00178	184	smart00178, SAR, Sar1p-like members of the Ras-fam	2e-31
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	4e-31
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	3e-19
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	6e-19
cd04105	202	cd04105, SR_beta, Signal recognition particle rece	5e-17
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	2e-14
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	3e-13
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	3e-11
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	4e-11
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	1e-10
pfam00071	162	pfam00071, Ras, Ras family	2e-10
pfam09439	181	pfam09439, SRPRB, Signal recognition particle rece	4e-10
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	8e-10
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	2e-09
pfam00503	329	pfam00503, G-alpha, G-protein alpha subunit	1e-08
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	2e-08
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	1e-07
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	2e-07
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	4e-07
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	4e-07
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	4e-07
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	2e-06
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	3e-06
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	5e-06
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	5e-06
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	6e-06
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	8e-06
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	9e-06
pfam04670	230	pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserve	1e-05
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	1e-05
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	2e-05
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	2e-05
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	3e-05
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	4e-05
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	9e-05
pfam08477	116	pfam08477, Miro, Miro-like protein	1e-04
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	1e-04
cd00066	315	cd00066, G-alpha, Alpha subunit of G proteins (gua	1e-04
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	2e-04
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	2e-04
smart00275	342	smart00275, G_alpha, G protein alpha subunit	2e-04
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	4e-04
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	5e-04
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	8e-04
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	0.001
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	0.002
COG0536	369	COG0536, Obg, Predicted GTPase [General function p	0.002
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	0.002
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	0.002
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	0.003
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	0.003
cd00880	161	cd00880, Era_like, E	0.003
cd01898	170	cd01898, Obg, Obg GTPase	0.003
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	0.004

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score =  360 bits (924), Expect = e-129
 Identities = 151/180 (83%), Positives = 169/180 (93%), Gaps = 1/180 (0%)

Query: 1   MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 59
           MG+  ++L   LFA+KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 60  VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV 119
           +SFTVWDVGGQDKIRPLWRHYFQNT GLIFVVDSNDR+R+ EA+DELHRML+EDELR+AV
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query: 120 LLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
           LLVFANKQDLPNAM+ +E+TDKLGLHSLRQR WYIQ+ CATSG+GLYEGLDWLS+N++ K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180

Length = 181

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score =  348 bits (895), Expect = e-125
 Identities = 145/159 (91%), Positives = 152/159 (95%)

Query: 17  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPL 76
           MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN+SFTVWDVGGQDKIRPL
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 60

Query: 77  WRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVS 136
           WRHYFQNT GLIFVVDSNDRERIGEA++EL RML+EDELR+AVLLVFANKQDLPNAMS +
Sbjct: 61  WRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAA 120

Query: 137 EVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSN 175
           EVTDKLGLHSLR R WYIQA CATSG GLYEGLDWLS+N
Sbjct: 121 EVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNN 159

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score =  346 bits (889), Expect = e-124
 Identities = 144/180 (80%), Positives = 164/180 (91%), Gaps = 1/180 (0%)

Query: 1   MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 59
           MG+ +S   K LF +KE+RILMVGLDAAGKTTILYKLKLGE+VTTIPTIGFNVETVEYKN
Sbjct: 1   MGLWLSSAFKSLFGKKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKN 60

Query: 60  VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV 119
           + FT+WDVGGQDK+RPLWRHY+QNT+GLIFVVDSNDRERIG+A++EL RMLSEDELR+AV
Sbjct: 61  LKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAV 120

Query: 120 LLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
           LLVFANKQDLPNAMS +EVT+KLGLHS+RQR WYIQ  CAT+ QGLYEGLDWLS+N+   
Sbjct: 121 LLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANIKKS 180

Length = 182

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score =  321 bits (823), Expect = e-114
 Identities = 136/168 (80%), Positives = 150/168 (89%)

Query: 8   LKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDV 67
              LF  KEMRILMVGLDAAGKTTILYKLKLGE VTTIPTIGFNVETV YKN+SFTVWDV
Sbjct: 5   FSKLFGNKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFTVWDV 64

Query: 68  GGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQ 127
           GGQDKIRPLWRHY+ NT GLIFVVDSNDR+RI EA++ELHRML+EDELR+AV+LVFANKQ
Sbjct: 65  GGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQ 124

Query: 128 DLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSN 175
           DLP+AM  +E+T+KLGLHS+R R WYIQ  CATSG GLYEGL WLS+N
Sbjct: 125 DLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNN 172

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score =  308 bits (792), Expect = e-109
 Identities = 115/168 (68%), Positives = 137/168 (81%)

Query: 9   KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVG 68
           K+    KEMRIL++GLD AGKTTILYKLKLGEIVTTIPTIGFNVETV YKNV FTVWDVG
Sbjct: 7   KLFGWNKEMRILILGLDNAGKTTILYKLKLGEIVTTIPTIGFNVETVTYKNVKFTVWDVG 66

Query: 69  GQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQD 128
           GQ+ +RPLWR+YF NT  +IFVVDS DR+RI EAK+ELH +L+E+EL +A LL+ ANKQD
Sbjct: 67  GQESLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILANKQD 126

Query: 129 LPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
           LP AMS +E+ + LGLH L+ R W IQ   A +G+GL EGLDWLS+ +
Sbjct: 127 LPGAMSEAEIRELLGLHELKDRPWEIQGCSAVTGEGLDEGLDWLSNYI 174

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score =  299 bits (767), Expect = e-105
 Identities = 115/158 (72%), Positives = 136/158 (86%)

Query: 18  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLW 77
           RILM+GLD AGKTTILYKLKLGE+VTTIPTIGFNVETVEYKNV FTVWDVGGQDKIRPLW
Sbjct: 1   RILMLGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVKFTVWDVGGQDKIRPLW 60

Query: 78  RHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSE 137
           +HY++NT GLIFVVDS+DRERI EAK+ELH++L+E+EL+ A LL+ ANKQDLP A++ SE
Sbjct: 61  KHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKGAPLLILANKQDLPGALTESE 120

Query: 138 VTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSN 175
           + + LGL S++ RRW+IQ   A +G GL EGLDWL   
Sbjct: 121 LIELLGLESIKGRRWHIQPCSAVTGDGLDEGLDWLIEQ 158

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score =  295 bits (756), Expect = e-104
 Identities = 122/165 (73%), Positives = 141/165 (85%)

Query: 11  LFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQ 70
           LF  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKNV F VWDVGGQ
Sbjct: 4   LFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQ 63

Query: 71  DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP 130
           DKIRPLWRHY+  T GLIFVVDS DR+RI EA+ ELHR++++ E+R+A+LLVFANKQDLP
Sbjct: 64  DKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLP 123

Query: 131 NAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSN 175
           +AM   E+ +KLGL  +R R WY+Q +CATSG GLYEGL WLSSN
Sbjct: 124 DAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSSN 168

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score =  264 bits (676), Expect = 7e-92
 Identities = 101/156 (64%), Positives = 125/156 (80%)

Query: 18  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLW 77
           RIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+GGQ  IRP W
Sbjct: 1   RILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYW 60

Query: 78  RHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSE 137
           R Y+ NT  +I+VVDS DR+R+G +K ELH ML E+EL++AVLLVFANKQD+P A+S +E
Sbjct: 61  RCYYSNTDAIIYVVDSTDRDRLGISKSELHAMLEEEELKDAVLLVFANKQDMPGALSEAE 120

Query: 138 VTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLS 173
           V +KLGL  L+ R W I    AT G+GL EG+DWL 
Sbjct: 121 VAEKLGLSELKDRTWQIFKTSATKGEGLDEGMDWLV 156

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score =  247 bits (633), Expect = 4e-85
 Identities = 92/172 (53%), Positives = 127/172 (73%), Gaps = 1/172 (0%)

Query: 5   ISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFT 63
            S L  + F RKE ++++VGLD AGKTTILY+  LGE+V T PTIG NVE + YKN+ F 
Sbjct: 3   FSSLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFL 62

Query: 64  VWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVF 123
           +WD+GGQ+ +R  W  Y+ NT  +I V+DS DRER+   K+EL++ML+ ++LR+AVLLV 
Sbjct: 63  MWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVL 122

Query: 124 ANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSN 175
           ANKQDL  AM+ +E+++ LGL S+R   W+IQ  CA +G+GL EGLDW++S 
Sbjct: 123 ANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIASR 174

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score =  211 bits (537), Expect = 1e-70
 Identities = 99/164 (60%), Positives = 127/164 (77%), Gaps = 1/164 (0%)

Query: 18  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLW 77
           R++ +GLD AGKTTIL+KLK  E +  IPTIGFNVETVEYKN+ FT+WDVGG+ K+RPLW
Sbjct: 1   RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLW 60

Query: 78  RHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSE 137
           +HY+ NT  ++FV+DS+ R+R+ EA  EL ++L+E ELR+A+LL+FANKQD+  A+SV E
Sbjct: 61  KHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEE 120

Query: 138 VTDKLGLHSL-RQRRWYIQAACATSGQGLYEGLDWLSSNVSAKG 180
           +T+ L LH L   R WYIQ   A SG GLYEGLDWLS  + A G
Sbjct: 121 MTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVAAG 164

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score =  208 bits (530), Expect = 2e-69
 Identities = 83/164 (50%), Positives = 111/164 (67%)

Query: 12  FARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQD 71
            +R+E+RIL++GLD AGKTTIL +L   +I    PT GFN++ V+       VWD+GGQ 
Sbjct: 11  SSRQEVRILLLGLDNAGKTTILKQLASEDISHITPTQGFNIKNVQADGFKLNVWDIGGQR 70

Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131
           KIRP WR+YF+NT  LI+V+DS DR+R  EA  EL  +L E++L    +LVFANKQDL  
Sbjct: 71  KIRPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLAGVPVLVFANKQDLLT 130

Query: 132 AMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSN 175
           A    EV + L LH +R R W+IQA  A +G+GL EG++W+  N
Sbjct: 131 AAPAEEVAEALNLHDIRDRSWHIQACSAKTGEGLQEGMNWVCKN 174

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score =  207 bits (529), Expect = 3e-69
 Identities = 83/165 (50%), Positives = 113/165 (68%), Gaps = 2/165 (1%)

Query: 9   KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKNVSFTVWDV 67
           K     +EMRILM+GLD AGKTTIL K   GE ++TI PT+GFN++T+EY      +WDV
Sbjct: 7   KTKQKEREMRILMLGLDNAGKTTILKKF-NGEDISTISPTLGFNIKTLEYNGYKLNIWDV 65

Query: 68  GGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQ 127
           GGQ  +R  WR+YF++T  LI+VVDS+DR R+ + K EL ++L E+ L  A LL+FANKQ
Sbjct: 66  GGQKSLRSYWRNYFESTDALIWVVDSSDRARLEDCKRELQKLLVEERLAGATLLIFANKQ 125

Query: 128 DLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWL 172
           DLP A+S  E+ + L L S++   W I    A +G+ L +G+DWL
Sbjct: 126 DLPGALSPEEIREVLELDSIKSHHWRIFGCSAVTGENLLDGIDWL 170

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score =  202 bits (516), Expect = 1e-67
 Identities = 75/159 (47%), Positives = 114/159 (71%), Gaps = 2/159 (1%)

Query: 18  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-KNVSFTVWDVGGQDKIRPL 76
           ++L++GLD+AGK+T+LYKLK  E+VTTIPT+GFNVE ++  K++S TVWDVGGQ+K+R +
Sbjct: 1   QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTV 60

Query: 77  WRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVS 136
           W+ Y +NT GL++VVDS+D  R+ E++ EL  +L  + ++   +++ ANKQDLP A++  
Sbjct: 61  WKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAE 120

Query: 137 EVTDKLGLHSL-RQRRWYIQAACATSGQGLYEGLDWLSS 174
           E+T +  L      R WY+Q   A +G+GL E    L+S
Sbjct: 121 EITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score =  190 bits (483), Expect = 4e-62
 Identities = 86/162 (53%), Positives = 112/162 (69%), Gaps = 6/162 (3%)

Query: 17  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-----KNVSFTVWDVGGQD 71
           + I+M+GLD+AGKTT+LY+LK  E V T+PT GFN E ++      K V+F  WDVGGQ+
Sbjct: 4   LHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNAKGVTFHFWDVGGQE 63

Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131
           K+RPLW+ Y + T G++FVVDS D ER+ EAK ELH++    E +   +LV ANKQDLPN
Sbjct: 64  KLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITKFSENQGVPVLVLANKQDLPN 123

Query: 132 AMSVSEVTDKLGLHSLRQRR-WYIQAACATSGQGLYEGLDWL 172
           A+ VSEV   L LH L     W++Q ACA  G+GL EGL+ L
Sbjct: 124 ALPVSEVEKLLALHELSSSTPWHVQPACAIIGEGLQEGLEKL 165

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score =  172 bits (439), Expect = 8e-56
 Identities = 72/160 (45%), Positives = 111/160 (69%), Gaps = 4/160 (2%)

Query: 19  ILMVGLDAAGKTTILYKLKLGEIVTTI--PTIGFNVETVEYKNVSFTVWDVGGQDKIRPL 76
           IL++GLD +GKTTI+ +LK     +    PT+GFNVE+ +  N+SFT +D+ GQ K R L
Sbjct: 2   ILVLGLDNSGKTTIINQLKPSNAQSQNIVPTVGFNVESFKKGNLSFTAFDMSGQGKYRGL 61

Query: 77  WRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDEL--REAVLLVFANKQDLPNAMS 134
           W HY++N  G+IFV+DS+DR R+  AKDEL  +L+  ++  R   +L +ANK DLP+A++
Sbjct: 62  WEHYYKNIQGIIFVIDSSDRLRMVVAKDELELLLNHPDIKHRRIPILFYANKMDLPDALT 121

Query: 135 VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSS 174
             ++T  L L +++ + W+I A+ A +G+GL EG+DWL +
Sbjct: 122 AVKITQLLCLENIKDKPWHIFASSALTGEGLDEGVDWLQA 161

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score =  155 bits (393), Expect = 2e-48
 Identities = 62/186 (33%), Positives = 97/186 (52%), Gaps = 13/186 (6%)

Query: 1   MGMVISRLKML-FARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 59
                + L  L   +KE +I+ +GLD AGKTT+L+ LK   +   +PT+    E +   N
Sbjct: 3   FDWFYNVLSSLGLYKKEAKIVFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGN 62

Query: 60  VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV 119
           V FT +D+GG ++ R +W+ YF    G++F+VD+ D ER  E+K+EL  +L+++EL    
Sbjct: 63  VKFTTFDLGGHEQARRVWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLNDEELANVP 122

Query: 120 LLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAAC------------ATSGQGLYE 167
           +L+  NK D P A+S  E+ + LGL+     +  +                    QG  E
Sbjct: 123 ILILGNKIDKPGAVSEEELREALGLYGTTTGKGGVSLKVSNIRPVEVFMCSVVKRQGYGE 182

Query: 168 GLDWLS 173
           G  WLS
Sbjct: 183 GFRWLS 188

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score =  144 bits (366), Expect = 1e-44
 Identities = 63/168 (37%), Positives = 99/168 (58%), Gaps = 16/168 (9%)

Query: 19  ILMVGLDAAGKTTILYKLK-----------LGEIVTTIPTIGFNVETVEYKNVSFTVWDV 67
           +L++GLD AGKTT L + K             +I    PT+G N+ T+E        WD+
Sbjct: 2   VLILGLDNAGKTTFLEQTKTKFSKNYKGLNPSKIT---PTVGLNIGTIEVGKARLMFWDL 58

Query: 68  GGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQ 127
           GGQ+++R LW  Y+  +HG+I+V+DS DRER  E+K    ++++ + L    LLV ANKQ
Sbjct: 59  GGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALEGVPLLVLANKQ 118

Query: 128 DLPNAMSVSEVTD--KLGLHSLRQRRWYIQAACATSGQGLYEGLDWLS 173
           DLP+A+SV+E+ +     +  + +R   +Q   A  G+G+ EG++WL 
Sbjct: 119 DLPDALSVAEIKEVFDDCIALIGRRDCLVQPVSALEGEGVEEGIEWLV 166

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score =  133 bits (337), Expect = 2e-40
 Identities = 61/158 (38%), Positives = 93/158 (58%), Gaps = 1/158 (0%)

Query: 19  ILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLW 77
           I +VGL  +GKTT++  +  G+    TIPT+GFN+  V   NV+  VWD+GGQ + R +W
Sbjct: 2   ITLVGLQNSGKTTLVNVIASGQFSEDTIPTVGFNMRKVTKGNVTIKVWDLGGQPRFRSMW 61

Query: 78  RHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSE 137
             Y +  + +++VVD+ DRE++  AK+ELH +L +  L    LLV  NK DLP A+SV E
Sbjct: 62  ERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDE 121

Query: 138 VTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSN 175
           + +++ L S+  R     +  A     +   LDWL  +
Sbjct: 122 LIEQMNLKSITDREVSCYSISAKEKTNIDIVLDWLIKH 159

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase

 Score =  129 bits (325), Expect = 2e-38
 Identities = 58/146 (39%), Positives = 84/146 (57%), Gaps = 6/146 (4%)

Query: 19  ILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPL 76
           IL++GLD AGKT++L+ L   E    + +PT GFN   +  ++    + ++GG   +R  
Sbjct: 2   ILVLGLDGAGKTSLLHSLS-SERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKY 60

Query: 77  WRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVS 136
           W+ Y   + GLIFVVDS D ER+  A+ ELH++L      +  L+V ANKQDLP A SV 
Sbjct: 61  WKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPP--DLPLVVLANKQDLPAARSVQ 118

Query: 137 EVTDKLGLHSL-RQRRWYIQAACATS 161
           E+  +L L  + R RRW +Q      
Sbjct: 119 EIHKELELEPIARGRRWILQGTSLDD 144

Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164

>gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13

 Score =  119 bits (300), Expect = 1e-34
 Identities = 54/163 (33%), Positives = 81/163 (49%), Gaps = 9/163 (5%)

Query: 19  ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWR 78
           +L VGLD AGKTT++  L+        PT+GF    +        ++D+GG    R +W 
Sbjct: 2   LLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWV 61

Query: 79  HYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEV 138
           +Y+   HGL+FVVDS+D +R+ E K+ L  +L    +    +LV ANKQD  NA+  ++V
Sbjct: 62  NYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADV 121

Query: 139 TDKLGLHSL--RQRRWYIQAACAT-------SGQGLYEGLDWL 172
            + L L  L    +       C+            + EGL WL
Sbjct: 122 IEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWL 164

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167

>gnl|CDD|197556 smart00178, SAR, Sar1p-like members of the Ras-family of small GTPases

 Score =  111 bits (279), Expect = 2e-31
 Identities = 60/169 (35%), Positives = 88/169 (52%), Gaps = 7/169 (4%)

Query: 15  KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIR 74
           K  +IL +GLD AGKTT+L+ LK   +    PT     E +   N+ FT +D+GG  + R
Sbjct: 16  KHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQAR 75

Query: 75  PLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS 134
            LW+ YF   +G++++VD+ D+ER  E+K EL  +LS++EL     L+  NK D P A S
Sbjct: 76  RLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAAS 135

Query: 135 VSEVTDKLGLHS-------LRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
             E+   LGL +       +  R   +         G  EG  WLS  +
Sbjct: 136 EDELRYALGLTNTTTGKGKVGVRPVEVFMCSVVRRMGYGEGFKWLSQYI 184

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. Length = 184

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  111 bits (280), Expect = 4e-31
 Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 5/132 (3%)

Query: 12  FARKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEY----KNVSFTVWD 66
              KE +I+++G    GKTT+L +L   E      PTIG            +N+   +WD
Sbjct: 1   LFMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWD 60

Query: 67  VGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANK 126
             GQ++ R L   Y++  +G++ V DS  RE   E  +E    L E    +  +L+  NK
Sbjct: 61  TAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNK 120

Query: 127 QDLPNAMSVSEV 138
            DL +  S SE 
Sbjct: 121 IDLFDEQSSSEE 132

Length = 219

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 79.4 bits (196), Expect = 3e-19
 Identities = 39/162 (24%), Positives = 64/162 (39%), Gaps = 16/162 (9%)

Query: 22  VGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVETVEY--KNVSFTVWDVGGQDKIRP 75
           VG    GK+++L  L  GE+         T   +V   E     V   + D  G D+   
Sbjct: 3   VGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDEFGG 62

Query: 76  LW-----RHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP 130
           L      R   +    ++ VVDS DRE   +AK  + R L ++ +    +++  NK DL 
Sbjct: 63  LGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKEGIP---IILVGNKIDLL 119

Query: 131 NAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWL 172
               V E+         +     +    A +G+G+ E  + L
Sbjct: 120 EEREVEEL--LRLEELAKILGVPVFEVSAKTGEGVDELFEKL 159

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 79.0 bits (195), Expect = 6e-19
 Identities = 28/124 (22%), Positives = 48/124 (38%), Gaps = 7/124 (5%)

Query: 16  EMRILMVGLDAAGKTTILYKLKLGE--IVTTIPTIGFNVET--VEYKNVSFTV--WDVGG 69
           E++I++VG    GK+T+L +L   +  I    P    N  T  +E    ++     D  G
Sbjct: 1   EIKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAG 60

Query: 70  QDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELR-EAVLLVFANKQD 128
           Q+    + R Y++     + V D        E   E               +++  NK D
Sbjct: 61  QEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKID 120

Query: 129 LPNA 132
           L +A
Sbjct: 121 LRDA 124

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta subunit (SR-beta), together with SR-alpha, forms the heterodimeric signal recognition particle (SRP)

 Score = 74.7 bits (184), Expect = 5e-17
 Identities = 40/142 (28%), Positives = 76/142 (53%), Gaps = 9/142 (6%)

Query: 19  ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETV---EYKNVSFTVWDVGGQDKIRP 75
           +L++G   +GKT +  KL  G++ +T+ +I  NV +      K    T+ DV G +K+R 
Sbjct: 3   VLLLGPSDSGKTALFTKLTTGKVRSTVTSIEPNVASFYSNSSKGKKLTLVDVPGHEKLRD 62

Query: 76  -LWRHYFQNTHGLIFVVDSNDRER-IGEAKDELHRMLSEDELREAV--LLVFANKQDLPN 131
            L  +   +   ++FVVDS   ++ I +  + L+ +L++ E  +    +L+  NKQDL  
Sbjct: 63  KLLEYLKASLKAIVFVVDSATFQKNIRDVAEFLYDILTDLEKIKNKIPILIACNKQDLFT 122

Query: 132 AMSVSEVTDKL--GLHSLRQRR 151
           A    ++ + L   +++LR+ R
Sbjct: 123 AKPAKKIKELLEKEINTLRESR 144

Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this type of cancer. Length = 202

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score = 67.1 bits (165), Expect = 2e-14
 Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 14/130 (10%)

Query: 17  MRILMVGLDAA-GKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNVSFTVWDVGGQ 70
            +I+++G D+  GKT++L +    +       TIG  F  +T+E   K V   +WD  GQ
Sbjct: 1   FKIVLIG-DSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQ 59

Query: 71  DKIRPLWRHYFQNTHGLIFVVDSNDR---ERIGEAKDELHRMLSEDELREAVLLVFANKQ 127
           ++ R +   Y++  HG I V D  +R   E + +  +EL      +      +++  NK 
Sbjct: 60  ERFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPPN----IPIILVGNKS 115

Query: 128 DLPNAMSVSE 137
           DL +   VS 
Sbjct: 116 DLEDERQVST 125

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 64.4 bits (157), Expect = 3e-13
 Identities = 40/181 (22%), Positives = 68/181 (37%), Gaps = 23/181 (12%)

Query: 15  KEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-------------TIGFNVETVEYKNVS 61
            E +I+++G   AGKTT +  L    +V T               T+  +  ++E     
Sbjct: 9   IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDE-D 67

Query: 62  FTVWDVG--GQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV 119
             V   G  GQ++ + +W    +   G I +VDS+              +          
Sbjct: 68  TGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSR----PITFHAEEIIDFLTSRNPIP 123

Query: 120 LLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
           ++V  NKQDL +A+   ++ + L L  L      +    AT G+G  + LD L       
Sbjct: 124 VVVAINKQDLFDALPPEKIREALKLELLSVP---VIEIDATEGEGARDQLDVLLLKDLLG 180

Query: 180 G 180
            
Sbjct: 181 S 181

Length = 187

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score = 58.3 bits (142), Expect = 3e-11
 Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 12/129 (9%)

Query: 17  MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNVSFTVWDVGGQD 71
            +I+++G    GK+++L +   G+       TIG  F  +T+E   K V   +WD  GQ+
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDR---ERIGEAKDELHRMLSEDELREAVLLVFANKQD 128
           + R +   Y++   G + V D  +R   E +     EL    S +     V+++  NK D
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASPN----VVIMLVGNKSD 116

Query: 129 LPNAMSVSE 137
           L     VS 
Sbjct: 117 LEEQRQVSR 125

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score = 58.1 bits (141), Expect = 4e-11
 Identities = 42/143 (29%), Positives = 66/143 (46%), Gaps = 17/143 (11%)

Query: 18  RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVE--TVEYKNVSFTVWDVGGQDK 72
           +IL++G    GK+++L +         +  TIG  F V+  TV+ K V   +WD  GQ++
Sbjct: 2   KILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQER 61

Query: 73  IRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDEL----REAVLLVFANKQD 128
            R L   Y++   G+I V D   R+      D L   L+E +      +AV ++  NK D
Sbjct: 62  FRTLTSSYYRGAQGVILVYDVTRRDTF----DNLDTWLNELDTYSTNPDAVKMLVGNKID 117

Query: 129 LPNAMSVSEVTDKLGLHSLRQRR 151
             N     EVT + G    R+  
Sbjct: 118 KEN----REVTREEGQKFARKHN 136

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 57.8 bits (139), Expect = 1e-10
 Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 11/127 (8%)

Query: 18  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE----TVEYKNVSFTVWDVGGQDKI 73
           +IL++G    GK+++L       +    PTIG + +    TV  K +  T+WD  GQ++ 
Sbjct: 16  KILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERF 75

Query: 74  RPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDEL----REAVLLVFANKQDL 129
           R L   Y++N  G+I V D   RE      D   +   E EL    ++ V ++  NK D 
Sbjct: 76  RTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGK---EVELYSTNQDCVKMLVGNKVDR 132

Query: 130 PNAMSVS 136
            +   VS
Sbjct: 133 ESERDVS 139

Length = 211

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score = 56.0 bits (136), Expect = 2e-10
 Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 12/127 (9%)

Query: 18  RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNVSFTVWDVGGQDK 72
           ++++VG    GK+++L +    +     IPTIG  F  +T+E   K V   +WD  GQ++
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 73  IRPLWRHYFQNTHGLIFVVDSNDRERIGEAK---DELHRMLSEDELREAVLLVFANKQDL 129
            R L   Y++   G + V D   R+     K   +E+ R   E+      +++  NK DL
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADEN----VPIVLVGNKCDL 116

Query: 130 PNAMSVS 136
            +   VS
Sbjct: 117 EDQRVVS 123

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|204242 pfam09439, SRPRB, Signal recognition particle receptor beta subunit

 Score = 55.5 bits (134), Expect = 4e-10
 Identities = 37/145 (25%), Positives = 70/145 (48%), Gaps = 12/145 (8%)

Query: 18  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNV---SFTVWDVGGQDKIR 74
            +++ GL  +GKT++   L  G +  T+ +   +    +Y      SFT+ D  G  K+R
Sbjct: 5   AVIIAGLCDSGKTSLFTLLTTGTVKKTVTSQEPSA-AYKYMLHKGFSFTLIDFPGHVKLR 63

Query: 75  P--LWRH-YFQNTHGLIFVVDSN-DRERIGEAKDELHRMLSEDELREAV--LLVFANKQD 128
              L       +  G++FVVDS    + + +  + L+ +LS  EL +    +L+  NKQ+
Sbjct: 64  QKLLETIKDSSSLRGIVFVVDSTAFPKEVTDTAEFLYEILSITELLKNGIDILIACNKQE 123

Query: 129 LPNAMSVSEVTDKL--GLHSLRQRR 151
              A    ++   L   ++++R+RR
Sbjct: 124 SFTARPPKKIKQALEKEINTIRERR 148

The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane. Length = 181

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score = 54.6 bits (132), Expect = 8e-10
 Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 12/132 (9%)

Query: 18  RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNVSFTVWDVGGQDK 72
           ++L++G    GK+ +L +        + I TIG  F + T+E   K V   +WD  GQ++
Sbjct: 4   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQER 63

Query: 73  IRPLWRHYFQNTHGLIFVVDSNDRERIGEAK---DELHRMLSEDELREAVLLVFANKQDL 129
            R +   Y++  HG+I V D  D+E     K    E+ R  SE+  +   LLV  NK DL
Sbjct: 64  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNK---LLV-GNKCDL 119

Query: 130 PNAMSVSEVTDK 141
            +   V     K
Sbjct: 120 TDKKVVDYTEAK 131

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score = 53.4 bits (129), Expect = 2e-09
 Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 12/128 (9%)

Query: 17  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNVSFTVWDVGGQD 71
            ++L++G    GK+ +L +        + I TIG  F + T+E   K +   +WD  GQ+
Sbjct: 4   FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 63

Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD---ELHRMLSEDELREAVLLVFANKQD 128
           + R +   Y++   G+I V D  D +     K+    +    SED       ++  NK D
Sbjct: 64  RFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHASED----VERMLVGNKCD 119

Query: 129 LPNAMSVS 136
           +     VS
Sbjct: 120 MEEKRVVS 127

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|215955 pfam00503, G-alpha, G-protein alpha subunit

 Score = 53.0 bits (128), Expect = 1e-08
 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 10/95 (10%)

Query: 45  IPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV-----DSNDRE-- 97
           + T G      ++K + F ++DVGGQ   R  W H F++   +IFVV     D    E  
Sbjct: 153 VKTTGIIETKFDFKGLKFRLFDVGGQRSERKKWIHCFEDVTAIIFVVSLSEYDQVLYEDD 212

Query: 98  ---RIGEAKDELHRMLSEDELREAVLLVFANKQDL 129
              R+ E+ +    + +    +   +++F NK+DL
Sbjct: 213 STNRLEESLNLFEEICNSPWFKNTPIILFLNKKDL 247

G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like family form a ring of residues centered on the nucleotide binding site. A Ggamma is found fused to an inactive Galpha in the Dictyostelium protein gbqA. Length = 329

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 51.8 bits (124), Expect = 2e-08
 Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 9/119 (7%)

Query: 18  RILMVGLDAAGKTTILYKLK----LGEIVTTIPTIGFNVETVEY--KNVSFTVWDVGGQD 71
           ++L++G    GK+++L +       G  +TTI  + F + TVE   + V   +WD  GQ+
Sbjct: 8   KLLIIGDSGVGKSSLLLRFADNTFSGSYITTI-GVDFKIRTVEINGERVKLQIWDTAGQE 66

Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP 130
           + R +   Y++ THG+I V D  + E     K  L  +    +    VL+   NK D P
Sbjct: 67  RFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLV--GNKNDDP 123

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score = 48.6 bits (116), Expect = 1e-07
 Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 12/120 (10%)

Query: 18  RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEY--KNVSFTVWDVGGQDK 72
           +I+++G    GKT ++ + K G        TIG  F ++T+E   K V   +WD  GQ++
Sbjct: 5   KIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 64

Query: 73  IRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREA---VLLVFANKQDL 129
            R + + Y+++ +G I   D   R       + +   + E E   A   VLL+  NK DL
Sbjct: 65  FRTITQSYYRSANGAIIAYDITRRSSF----ESVPHWIEEVEKYGASNVVLLLIGNKCDL 120

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score = 49.2 bits (117), Expect = 2e-07
 Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 16/130 (12%)

Query: 18  RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNVSFTVWDVGGQDK 72
           +I+++G    GK+ IL +    E  + +  TIG    T    VE K V   +WD  GQ++
Sbjct: 14  KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73

Query: 73  IRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELRE-----AVLLVFANKQ 127
            R +   Y++   G + V D   R+      D + R L   ELR+      V+++  NK 
Sbjct: 74  YRAITSAYYRGAVGALLVYDITKRQTF----DNVQRWLR--ELRDHADSNIVIMMAGNKS 127

Query: 128 DLPNAMSVSE 137
           DL +  SV+E
Sbjct: 128 DLNHLRSVAE 137

Length = 216

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score = 47.2 bits (112), Expect = 4e-07
 Identities = 36/138 (26%), Positives = 66/138 (47%), Gaps = 13/138 (9%)

Query: 18  RILMVGLDAAGKTTILYKLK----LGEIVTTIPTIGFNVETV--EYKNVSFTVWDVGGQD 71
           ++L++G  + GKT+ L++          V+T+  I F V+TV    K +   +WD  GQ+
Sbjct: 3   KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTV-GIDFKVKTVYRNDKRIKLQIWDTAGQE 61

Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131
           + R +   Y++   G I + D  + E     +D   ++ +       V+LV  NK D+ +
Sbjct: 62  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILV-GNKCDMED 120

Query: 132 AMSVS-----EVTDKLGL 144
              VS     ++ D+LG 
Sbjct: 121 ERVVSAERGRQLADQLGF 138

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score = 47.2 bits (113), Expect = 4e-07
 Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 12/129 (9%)

Query: 17  MRILMVGLDAAGKTTILYKLKLG-----EIVTTIPTIGFNVETVEYKNVSFTVWDVGGQD 71
            +++++G    GKT+++ +            TT  +       +  K +   +WD  GQ+
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60

Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAK---DELHRMLSEDELREAVLLVFANKQD 128
           +   L   Y+++  G I V D  D +   + K    EL +M   +      L++  NK D
Sbjct: 61  RYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNN----ISLVIVGNKID 116

Query: 129 LPNAMSVSE 137
           L     VS+
Sbjct: 117 LERQRVVSK 125

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score = 47.0 bits (112), Expect = 4e-07
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 6/81 (7%)

Query: 18 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEY--KNVSFTVWDVGGQDK 72
          +I+++G    GKT + Y+   G     T  TIG  F   TVE   + +   +WD  GQ++
Sbjct: 4  KIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQER 63

Query: 73 IR-PLWRHYFQNTHGLIFVVD 92
           R  + +HY++N H ++FV D
Sbjct: 64 FRKSMVQHYYRNVHAVVFVYD 84

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 8/133 (6%)

Query: 18  RILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFN----VETVEYKNVSFTVWDVGGQD 71
           ++++VG    GKT +L + K G  +  + I T+G      V TV+   V   +WD  GQ+
Sbjct: 2   KVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQE 61

Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131
           + R +   Y+++ H L+ + D  ++      +  L  +L E    + V+++  NK D+  
Sbjct: 62  RFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEIL-EYAQSDVVIMLLGNKADMSG 120

Query: 132 AMSV-SEVTDKLG 143
              V  E  ++L 
Sbjct: 121 ERVVKREDGERLA 133

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 44.9 bits (106), Expect = 3e-06
 Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 14/129 (10%)

Query: 18  RILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIG--FNVETVEYKN--VSFTVWDVG 68
           +I+++G    GKT ++ +   G      P     TIG  F ++TVE K   +   +WD  
Sbjct: 9   KIVLIGNAGVGKTCLVRRFTQG----LFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTA 64

Query: 69  GQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQD 128
           GQ++ R + + Y+++ + LI   D    E      + L R + +    + + ++  NK D
Sbjct: 65  GQERFRSITQSYYRSANALILTYDITCEESFRCLPEWL-REIEQYANNKVITILVGNKID 123

Query: 129 LPNAMSVSE 137
           L     VS+
Sbjct: 124 LAERREVSQ 132

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 44.3 bits (105), Expect = 5e-06
 Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 15/132 (11%)

Query: 18  RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKNVSFTV--WDVGGQDK 72
           +++ +G    GK+ I+ +   G  V+  +PTIG  + V+ V  +N    V  +D+ G  +
Sbjct: 2   KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE 61

Query: 73  IRPLWRHYFQNTHGLIFVVDSNDRER-------IGEAKDELHRMLSEDELREAVLLVFAN 125
              +   ++++T G++ V D  DR+        + E K E         +   V++V AN
Sbjct: 62  YLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQE---GGPHGNMENIVVVVCAN 118

Query: 126 KQDLPNAMSVSE 137
           K DL    +VSE
Sbjct: 119 KIDLTKHRAVSE 130

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 44.4 bits (105), Expect = 5e-06
 Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 12/87 (13%)

Query: 18 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET---VEYKNVSFTVWDVGGQ--- 70
          ++++VG  A GKT++LY   LGE      PT+  N  T   V+ K V   +WD  GQ   
Sbjct: 3  KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEY 62

Query: 71 DKIRPLWRHYFQNTHGLI--FVVDSND 95
          +++RPL    +   H ++  F +D+ D
Sbjct: 63 ERLRPL---SYSKAHVILIGFAIDTPD 86

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score = 44.1 bits (105), Expect = 6e-06
 Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 12/128 (9%)

Query: 18  RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEY--KNVSFTVWDVGGQDK 72
           +++++G  + GK++I+ +    E       TIG  F  +TV      V F +WD  GQ++
Sbjct: 3   KLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQER 62

Query: 73  IRPLWRHYFQNTHGLIFVVDSNDRERIGEAK---DELHRMLSEDELREAVLLVFANKQDL 129
            R L   Y++     I V D    E   +AK    EL      +     V+ +  NK DL
Sbjct: 63  YRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPN----IVIALAGNKADL 118

Query: 130 PNAMSVSE 137
            +   VS 
Sbjct: 119 ESKRQVST 126

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 43.7 bits (103), Expect = 8e-06
 Identities = 28/125 (22%), Positives = 56/125 (44%), Gaps = 5/125 (4%)

Query: 47  TIG--FNVETVEYKNVSFTV--WDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
           TIG  F +E  E   V F++  WD  GQ++ + +   Y++    +I V D  D   +   
Sbjct: 32  TIGVDFEMERFEVLGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHT 91

Query: 103 KDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSG 162
           +  L   L E++    +L +   K+DL +      + ++  +   R+ +    A  A +G
Sbjct: 92  RQWLEDALKENDPSSVLLFLVGTKKDLSSPAQY-ALMEQDAIKLAREMKAEYWAVSALTG 150

Query: 163 QGLYE 167
           + + +
Sbjct: 151 ENVRD 155

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 44.0 bits (104), Expect = 9e-06
 Identities = 31/125 (24%), Positives = 60/125 (48%), Gaps = 6/125 (4%)

Query: 18  RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN-----VETVEYKNVSFTVWDVGGQD 71
           R++++G    GK+++L +   G     + PT+G +     +E      +   +WD  GQ+
Sbjct: 4   RLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE 63

Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131
           + R + R Y++N+ G++ V D  +RE      D L    S  +    V ++  +K DL +
Sbjct: 64  RFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLES 123

Query: 132 AMSVS 136
              V+
Sbjct: 124 QRQVT 128

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|218203 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region

 Score = 44.1 bits (105), Expect = 1e-05
 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 10/90 (11%)

Query: 18 RILMVGLDAAGKTT----ILYKLKLGEIVTTIPTIGFNVETVEY-KNVSFTVWDVGGQDK 72
          ++L++GL  +GK++    I       + +    TI      V +  N++  +WD  GQD 
Sbjct: 1  KVLLMGLRGSGKSSMRSIIFSNYSPRDTLRLGATIDVEQSHVRFLGNLTLNLWDCPGQDD 60

Query: 73 IRPLWRHY-----FQNTHGLIFVVDSNDRE 97
              +        F N   LI+V D   RE
Sbjct: 61 FMENYLTRQKEHIFSNVGVLIYVFDVESRE 90

GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B. Length = 230

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 10/119 (8%)

Query: 18  RILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFN----VETVEYKNVSFTVWDVGGQDK 72
           + L++G    GK+ +L++    +       TIG      V  V  K+V   +WD  GQ++
Sbjct: 2   KFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQER 61

Query: 73  IRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELH--RMLSEDELREAVLLVFANKQDL 129
            R + R Y++   G + V D   RE      + L   R L+  ++   V+++  NK+DL
Sbjct: 62  FRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASPDI---VIILVGNKKDL 117

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 13/95 (13%)

Query: 16 EMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVET-----VEYKNVSFTVWDVG 68
          E ++++VG    GKT++  +L +GE        T G NV+       E K +   VWD G
Sbjct: 1  EAKLMLVGQGGVGKTSLCKQL-IGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFG 59

Query: 69 GQDKIRPLWRHYFQNTHGLIFVV----DSNDRERI 99
          GQ+      +  F  +  L  +V      ++  R+
Sbjct: 60 GQEIYHATHQF-FLTSRSLYLLVFDLRTGDEVSRV 93

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 41/176 (23%), Positives = 77/176 (43%), Gaps = 28/176 (15%)

Query: 17  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKN------------VS 61
           +++L +G    GKTT LY+    +     I T+G  F  + V Y +            V 
Sbjct: 5   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRVH 64

Query: 62  FTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLL 121
             +WD  GQ++ R L   +F++  G + + D    +     ++ + ++ +        ++
Sbjct: 65  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENPDIV 124

Query: 122 VFANKQDLPNAMSVS-----EVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWL 172
           +  NK DLP+   VS     E+ DK G+        Y + + AT GQ + + ++ L
Sbjct: 125 LIGNKADLPDQREVSERQARELADKYGIP-------YFETSAAT-GQNVEKAVETL 172

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score = 41.9 bits (98), Expect = 3e-05
 Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 5/80 (6%)

Query: 18 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYK--NVSFTVWDVGGQDK 72
          R+L++G    GKT +L +    E  ++ I TIG  F ++T+E     V   +WD  GQ++
Sbjct: 2  RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQER 61

Query: 73 IRPLWRHYFQNTHGLIFVVD 92
           + + + Y++   G+  V D
Sbjct: 62 YQTITKQYYRRAQGIFLVYD 81

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 5/85 (5%)

Query: 18 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKN----VSFTVWDVGGQDK 72
          ++++VG    GKTT + +   GE     + T+G  V  +++      + F VWD  GQ+K
Sbjct: 2  KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEK 61

Query: 73 IRPLWRHYFQNTHGLIFVVDSNDRE 97
             L   Y+      I + D   R 
Sbjct: 62 FGGLRDGYYIQGQCAIIMFDVTSRV 86

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score = 40.8 bits (95), Expect = 9e-05
 Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 3/83 (3%)

Query: 48  IGFNVETVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDE 105
           + F ++TVE   K +   +WD  GQ++   +   Y+++  G+I V D   +E   +    
Sbjct: 35  VDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKW 94

Query: 106 LHRMLSEDELREAVLLVFANKQD 128
           + +M+ +    +A LL+  NK D
Sbjct: 95  M-KMIDKYASEDAELLLVGNKLD 116

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 23/117 (19%), Positives = 51/117 (43%), Gaps = 8/117 (6%)

Query: 18  RILMVGLDAAGKTTILYKLKLGEIVTTI-----PTIGFNVETVEYKNVSFTVWDVGGQDK 72
           +++++G   +GK+++L +L  GE           T+  +   V+       +WD GG+++
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 73  IRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSE--DELREAVLLVFANKQ 127
           ++     + +    ++ V D  DRE + E    L   L        +  +++  NK 
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEV-SRLIAWLPNLRKLGGKIPVILVGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 12/125 (9%)

Query: 20  LMVGLDAAGKTTILYKLKLGEIVTTIP-TIG--FNVETVEY--KNVSFTVWDVGGQDKIR 74
           +++G    GK+ +L++    + +   P TIG  F    +E   + +   +WD  GQ++ R
Sbjct: 6   IIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFR 65

Query: 75  PLWRHYFQNTHGLIFVVDSNDRE---RIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131
            + R Y++   G + V D   R     +     +   + + +     V+ +  NK DL  
Sbjct: 66  AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN----TVIFLIGNKADLEA 121

Query: 132 AMSVS 136
              V+
Sbjct: 122 QRDVT 126

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206639 cd00066, G-alpha, Alpha subunit of G proteins (guanine nucleotide binding)

 Score = 41.0 bits (97), Expect = 1e-04
 Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 12/96 (12%)

Query: 45  IPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD 104
           + T G        KN+ F ++DVGGQ   R  W H F++   +IFVV  ++ +++    +
Sbjct: 146 VKTTGIIETDFSIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLVEDE 205

Query: 105 ELHRML-----------SEDELREAVLLVFANKQDL 129
            ++RM            S      +++L F NK+DL
Sbjct: 206 SVNRMQESLKLFDSICNSRWFANTSIIL-FLNKKDL 240

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. Length = 315

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 7/65 (10%)

Query: 19 ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET-VEYKNVSFTV--WDVGGQ---D 71
          I++VG  A GKT +L      +  T  +PT+  N    V        +  WD  GQ   D
Sbjct: 3  IVVVGDGAVGKTCLLISYTTNKFPTEYVPTVFDNYSANVTVDGKQVNLGLWDTAGQEEYD 62

Query: 72 KIRPL 76
          ++RPL
Sbjct: 63 RLRPL 67

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 28/136 (20%), Positives = 58/136 (42%), Gaps = 24/136 (17%)

Query: 17  MRILMVGLDAAGKTTIL-----------YKLKLGEIVTTIPTIGFNVETVEY---KNVSF 62
           ++I+++G  A+GKT+++           YK  +G        + F    +      NV+ 
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIG--------LDFFSRRITLPGSLNVTL 52

Query: 63  TVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD--ELHRMLSEDELREAVL 120
            VWD+GGQ     +   Y      +  V D  + +     +D   + + ++E+   +  +
Sbjct: 53  QVWDIGGQQIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKM 112

Query: 121 LVFANKQDLPNAMSVS 136
           ++  NK DL +   V+
Sbjct: 113 VLVGNKTDLEHNRQVT 128

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|214595 smart00275, G_alpha, G protein alpha subunit

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 30/105 (28%)

Query: 45  IPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD 104
           +PT G        K + F ++DVGGQ   R  W H F N   +IF V  ++        D
Sbjct: 169 VPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEY-------D 221

Query: 105 ELHRMLSEDE----LREAVLL----------------VFANKQDL 129
           ++   L EDE    ++E++ L                +F NK DL
Sbjct: 222 QV---LEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263

Subunit of G proteins that contains the guanine nucleotide binding site. Length = 342

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score = 38.7 bits (91), Expect = 4e-04
 Identities = 31/127 (24%), Positives = 60/127 (47%), Gaps = 10/127 (7%)

Query: 18  RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVE-TVEYKNVSFTVWDVGGQDKI 73
           +++++G    GK+ +  +   GE V    PTI   +  +  V+ +  +  + D  GQ++ 
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIEDSYRKQIVVDGETYTLDILDTAGQEEF 60

Query: 74  RPLWRHYFQNTHGLIFVVDSNDR---ERIGEAKDELHRMLSEDELREAVLLVFANKQDLP 130
             +   Y +N  G I V     R   E I   ++++ R+  ++++   ++LV  NK DL 
Sbjct: 61  SAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKEDV--PIVLV-GNKCDLE 117

Query: 131 NAMSVSE 137
           N   VS 
Sbjct: 118 NERQVST 124

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score = 38.8 bits (90), Expect = 5e-04
 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 9/87 (10%)

Query: 54  TVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSED 113
           T++ K +   +WD  GQ+  R + R Y++   G + V D   RE        L     ED
Sbjct: 49  TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWL-----ED 103

Query: 114 ELREA----VLLVFANKQDLPNAMSVS 136
             + A     +++  NK DL +  +VS
Sbjct: 104 ARQHANANMTIMLIGNKCDLAHRRAVS 130

Length = 210

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 38.2 bits (89), Expect = 8e-04
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 5/84 (5%)

Query: 18 RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVETVEYKN----VSFTVWDVGGQDK 72
          ++++VG    GKTT + +   GE      PTIG  V  +++      + F  WD  GQ+K
Sbjct: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74

Query: 73 IRPLWRHYFQNTHGLIFVVDSNDR 96
             L   Y+ +    I + D   R
Sbjct: 75 FGGLRDGYYIHGQCAIIMFDVTAR 98

Length = 219

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 35/135 (25%)

Query: 18  RILMVGLDAAGKTTIL-----------YKLKLGEIVTTIPTIG--FNVETVE---YKNVS 61
           ++L++G    GKT+I+           YK           TIG  F ++ +E      V 
Sbjct: 2   KVLVIGDLGVGKTSIIKRYVHGVFSQHYK----------ATIGVDFALKVIEWDPNTVVR 51

Query: 62  FTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA---KDELH---RMLSEDEL 115
             +WD+ GQ++   + R Y++   G I V D             K +L     + + + +
Sbjct: 52  LQLWDIAGQERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPI 111

Query: 116 REAVLLVFANKQDLP 130
             A+LL  ANK DL 
Sbjct: 112 P-ALLL--ANKCDLK 123

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 5/86 (5%)

Query: 16 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVE-YKN---VSFTVWDVGGQ 70
          E ++++VG    GKTT + +   GE     IPT+G  V  ++ Y N   + F VWD  GQ
Sbjct: 9  EFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQ 68

Query: 71 DKIRPLWRHYFQNTHGLIFVVDSNDR 96
          +K   L   Y+      I + D   R
Sbjct: 69 EKFGGLRDGYYIKGQCAIIMFDVTSR 94

Length = 215

>gnl|CDD|223610 COG0536, Obg, Predicted GTPase [General function prediction only]

 Score = 37.5 bits (88), Expect = 0.002
 Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 29/135 (21%)

Query: 21  MVGLDAAGKTTILYKL-----KLG--EIVTTIPTIGFNVETVEYKNVSFTVWDVGG---- 69
           +VGL  AGK+T+L  +     K+      T +P +G  V     +  SF V D+ G    
Sbjct: 164 LVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGV-VRVDGGE--SFVVADIPGLIEG 220

Query: 70  --QDK---IRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD------ELHRMLSEDELREA 118
             +     +R L RH  + T  L+ V+D +  +     +D      EL +     +L E 
Sbjct: 221 ASEGVGLGLRFL-RH-IERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKY--SPKLAEK 276

Query: 119 VLLVFANKQDLPNAM 133
             +V  NK DLP   
Sbjct: 277 PRIVVLNKIDLPLDE 291

Length = 369

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 29/124 (23%), Positives = 58/124 (46%), Gaps = 6/124 (4%)

Query: 18  RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEY--KNVSFTVWDVGGQDK 72
           +++ +G  + GKT+I+ +            TIG  F  +T+    K V   +WD  GQ++
Sbjct: 2   KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQER 61

Query: 73  IRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA 132
            R L   Y +++   + V D  +R+      D+    + ++   + ++++  NK DL + 
Sbjct: 62  FRSLIPSYIRDSSVAVVVYDITNRQSFDNT-DKWIDDVRDERGNDVIIVLVGNKTDLSDK 120

Query: 133 MSVS 136
             VS
Sbjct: 121 RQVS 124

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 37.0 bits (85), Expect = 0.002
 Identities = 23/106 (21%), Positives = 48/106 (45%), Gaps = 4/106 (3%)

Query: 60  VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV 119
           V   +WD  GQ++ R L   Y +++   I V D  +R+        +  +L+E   ++ +
Sbjct: 29  VRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG-KDVI 87

Query: 120 LLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGL 165
           + +  NK DL +   + +VT + G+   ++         A +G  +
Sbjct: 88  IALVGNKTDLGD---LRKVTYEEGMQKAQEYNTMFHETSAKAGHNI 130

Length = 176

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score = 36.2 bits (84), Expect = 0.003
 Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 9/96 (9%)

Query: 47  TIGFNVE------TVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIG 100
           TIG  VE      T++ K +   +WD  GQ+  R + R Y++   G + V D   RE   
Sbjct: 36  TIG--VEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFN 93

Query: 101 EAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVS 136
                L            ++L+  NK DL +   VS
Sbjct: 94  HLTSWLEDARQHSNSNMTIMLI-GNKCDLESRREVS 128

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 36.4 bits (84), Expect = 0.003
 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 12/87 (13%)

Query: 18 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFN---VETVEYKNVSFTVWDVGGQ--- 70
          +++++G  A GKT++L     G       PT+  N      V+   V  ++WD  GQ   
Sbjct: 2  KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYIHDIFVDGLAVELSLWDTAGQEEF 61

Query: 71 DKIRPLWRHYFQNTH--GLIFVVDSND 95
          D++R L    + +TH   L F VD+ D
Sbjct: 62 DRLRSL---SYADTHVIMLCFSVDNPD 85

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 36.1 bits (84), Expect = 0.003
 Identities = 33/127 (25%), Positives = 46/127 (36%), Gaps = 26/127 (20%)

Query: 22  VGLDAAGKTTILYKLKLGEIV--------TTIPTIGFNVETVEYKNVSFTVWDVGGQDKI 73
            G    GK+++L  L LG+ V        TT   +    E +    V     D  G D+ 
Sbjct: 3   FGRPNVGKSSLLNAL-LGQNVGIVSPIPGTTRDPVRKEWELLPLGPVVLI--DTPGLDEE 59

Query: 74  RPL--------WRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFAN 125
             L         +   +    ++ VVDS+      EAK     +L E      VLLV  N
Sbjct: 60  GGLGRERVEEARQVADR-ADLVLLVVDSDLTPVEEEAK---LGLLRERGKP--VLLVL-N 112

Query: 126 KQDLPNA 132
           K DL   
Sbjct: 113 KIDLVPE 119

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|206685 cd01898, Obg, Obg GTPase

 Score = 36.2 bits (85), Expect = 0.003
 Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 25/131 (19%)

Query: 21  MVGLDAAGKTTILYKL-----KLG--EIVTTIPTIGFNVETVEYKN-VSFTVWDVGG--- 69
           +VGL  AGK+T+L  +     K+      T +P +G     V   +  SF + D+ G   
Sbjct: 5   LVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLG----VVRVDDGRSFVIADIPGLIE 60

Query: 70  ---QDK---IRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLS--EDELREAVLL 121
              + K    R L RH  + T  L+ V+D +  +   E  + +   L      L E   +
Sbjct: 61  GASEGKGLGHRFL-RH-IERTRVLLHVIDLSGEDDPVEDYETIRNELEAYNPGLAEKPRI 118

Query: 122 VFANKQDLPNA 132
           V  NK DL +A
Sbjct: 119 VVLNKIDLLDA 129

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. Length = 170

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score = 36.0 bits (84), Expect = 0.004
 Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 16/130 (12%)

Query: 17  MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNVSFTVWDVGGQD 71
            +I+++G    GK+ +L +    E  + +  TIG  F   T++   K +   +WD  GQ+
Sbjct: 4   FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTAGQE 63

Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREA-----VLLVFANK 126
           + R +   Y++   G + V D   +       + + R L   ELR+      V+++  NK
Sbjct: 64  RYRAITSAYYRGAVGALLVYDITKK----STFENVERWLK--ELRDHADSNIVIMLVGNK 117

Query: 127 QDLPNAMSVS 136
            DL +  +V 
Sbjct: 118 SDLRHLRAVP 127

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	180
PLN00223	181	ADP-ribosylation factor; Provisional	100.0
PTZ00133	182	ADP-ribosylation factor; Provisional	100.0
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	100.0
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	100.0
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	100.0
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	100.0
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	100.0
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	100.0
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	100.0
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	100.0
smart00178	184	SAR Sar1p-like members of the Ras-family of small	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	100.0
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
PLN03118	211	Rab family protein; Provisional	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	100.0
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.98
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.98
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.98
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.98
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.98
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.98
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	99.98
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	99.98
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.98
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.98
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.98
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.98
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.98
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.97
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.97
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.97
PLN03108	210	Rab family protein; Provisional	99.97
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.97
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.97
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.97
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.97
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.97
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.97
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.97
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.97
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.97
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.97
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.97
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.97
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.97
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.97
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.97
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.97
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.97
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.97
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.97
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.96
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.96
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.96
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.96
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.96
KOG0395	196	consensus Ras-related GTPase [General function pre	99.96
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.95
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.95
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.95
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.95
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.95
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.95
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.95
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.94
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.94
PRK12299	335	obgE GTPase CgtA; Reviewed	99.94
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.94
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.94
PLN00023	334	GTP-binding protein; Provisional	99.94
PRK04213	201	GTP-binding protein; Provisional	99.93
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.93
PRK03003	472	GTP-binding protein Der; Reviewed	99.93
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.93
cd00881	189	GTP_translation_factor GTP translation factor fami	99.93
PRK15494	339	era GTPase Era; Provisional	99.93
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.93
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.93
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.93
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.93
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.93
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.93
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.93
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.93
COG1100	219	GTPase SAR1 and related small G proteins [General	99.93
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.93
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.92
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.92
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.92
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.92
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.92
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.92
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.92
PTZ00099	176	rab6; Provisional	99.92
PRK03003	472	GTP-binding protein Der; Reviewed	99.92
PRK12296	500	obgE GTPase CgtA; Reviewed	99.91
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.91
PRK12297	424	obgE GTPase CgtA; Reviewed	99.91
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.91
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.91
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.91
PRK00093	435	GTP-binding protein Der; Reviewed	99.9
COG2229	187	Predicted GTPase [General function prediction only	99.9
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.9
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.9
PRK11058	426	GTPase HflX; Provisional	99.9
PRK12298	390	obgE GTPase CgtA; Reviewed	99.9
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.9
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.9
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.9
PRK00093	435	GTP-binding protein Der; Reviewed	99.9
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.9
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.9
PRK00089	292	era GTPase Era; Reviewed	99.9
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.9
COG1159	298	Era GTPase [General function prediction only]	99.89
PRK05306	787	infB translation initiation factor IF-2; Validated	99.89
CHL00189	742	infB translation initiation factor 2; Provisional	99.89
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.88
PRK12317	425	elongation factor 1-alpha; Reviewed	99.88
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.88
COG1160	444	Predicted GTPases [General function prediction onl	99.88
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.88
COG1160	444	Predicted GTPases [General function prediction onl	99.88
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.88
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.88
PRK05433	600	GTP-binding protein LepA; Provisional	99.87
COG0486	454	ThdF Predicted GTPase [General function prediction	99.87
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.87
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.87
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.87
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.86
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.86
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.86
COG0218	200	Predicted GTPase [General function prediction only	99.86
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.86
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.86
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.86
PRK10218	607	GTP-binding protein; Provisional	99.85
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.85
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.85
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.84
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.84
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.84
PRK04004	586	translation initiation factor IF-2; Validated	99.84
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.84
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.83
KOG1673	205	consensus Ras GTPases [General function prediction	99.83
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.82
PRK12736	394	elongation factor Tu; Reviewed	99.82
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.82
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.82
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.82
KOG0090	238	consensus Signal recognition particle receptor, be	99.81
PRK12735	396	elongation factor Tu; Reviewed	99.81
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.81
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.8
CHL00071	409	tufA elongation factor Tu	99.8
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.8
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.79
PRK13351	687	elongation factor G; Reviewed	99.79
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.79
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.79
PLN00043	447	elongation factor 1-alpha; Provisional	99.79
PLN03126	478	Elongation factor Tu; Provisional	99.79
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.79
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.78
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.78
PTZ00141	446	elongation factor 1- alpha; Provisional	99.78
PRK00049	396	elongation factor Tu; Reviewed	99.78
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.78
PLN03127	447	Elongation factor Tu; Provisional	99.77
COG1084	346	Predicted GTPase [General function prediction only	99.77
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.77
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.77
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.76
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.76
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.76
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.75
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.75
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.74
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.73
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.73
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.73
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.73
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.73
COG3596	296	Predicted GTPase [General function prediction only	99.72
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.72
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.71
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.71
PRK12739	691	elongation factor G; Reviewed	99.7
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.7
COG1163	365	DRG Predicted GTPase [General function prediction	99.68
PRK12740	668	elongation factor G; Reviewed	99.68
PRK00007	693	elongation factor G; Reviewed	99.68
COG0536	369	Obg Predicted GTPase [General function prediction	99.68
COG2262	411	HflX GTPases [General function prediction only]	99.67
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.65
KOG1145	683	consensus Mitochondrial translation initiation fac	99.65
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.64
PRK13768	253	GTPase; Provisional	99.63
PRK09602	396	translation-associated GTPase; Reviewed	99.63
PRK09866	741	hypothetical protein; Provisional	99.63
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.62
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.6
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.58
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.57
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.57
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.56
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.56
PRK14845	1049	translation initiation factor IF-2; Provisional	99.54
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.54
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.54
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.53
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.53
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.52
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.52
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.51
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.51
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.49
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.49
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.47
PTZ00416	836	elongation factor 2; Provisional	99.47
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.46
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	99.45
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.44
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.43
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.43
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.43
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.41
PRK07560	731	elongation factor EF-2; Reviewed	99.41
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.41
KOG3887	347	consensus Predicted small GTPase involved in nucle	99.4
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.39
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.38
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.38
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.37
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.37
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.36
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.28
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.27
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.27
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.27
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.27
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.26
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.25
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.24
PTZ00258	390	GTP-binding protein; Provisional	99.24
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.24
KOG0099	379	consensus G protein subunit Galphas, small G prote	99.22
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	99.2
PRK09601	364	GTP-binding protein YchF; Reviewed	99.17
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.17
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.16
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	99.13
COG5258	527	GTPBP1 GTPase [General function prediction only]	99.09
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	99.08
KOG2486	320	consensus Predicted GTPase [General function predi	99.07
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	99.07
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	99.07
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.04
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	99.03
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	99.03
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	99.01
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.01
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	99.01
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.0
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	98.99
PRK12289	352	GTPase RsgA; Reviewed	98.97
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.95
COG0012	372	Predicted GTPase, probable translation factor [Tra	98.9
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.9
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.89
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.88
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.87
PRK12288	347	GTPase RsgA; Reviewed	98.87
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.84
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.84
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.82
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.81
KOG0460	449	consensus Mitochondrial translation elongation fac	98.81
KOG0410	410	consensus Predicted GTP binding protein [General f	98.8
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.79
PRK00098	298	GTPase RsgA; Reviewed	98.78
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.78
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.76
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	98.75
COG1161	322	Predicted GTPases [General function prediction onl	98.75
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	98.75
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.73
KOG1143	591	consensus Predicted translation elongation factor	98.72
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.7
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.69
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.65
PRK12289	352	GTPase RsgA; Reviewed	98.64
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.63
PRK12288	347	GTPase RsgA; Reviewed	98.61
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.6
PRK14974	336	cell division protein FtsY; Provisional	98.59
PRK10416	318	signal recognition particle-docking protein FtsY;	98.57
KOG0466	466	consensus Translation initiation factor 2, gamma s	98.56
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.55
cd03112	158	CobW_like The function of this protein family is u	98.55
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	98.55
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.54
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.54
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.54
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.52
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.52
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.49
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.49
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.45
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.44
PRK13796	365	GTPase YqeH; Provisional	98.43
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.38
PRK00098	298	GTPase RsgA; Reviewed	98.37
COG1162	301	Predicted GTPases [General function prediction onl	98.37
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.34
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.31
COG0523	323	Putative GTPases (G3E family) [General function pr	98.29
PRK13796	365	GTPase YqeH; Provisional	98.29
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.28
PRK01889	356	GTPase RsgA; Reviewed	98.27
cd03114	148	ArgK-like The function of this protein family is u	98.27
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.26
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	98.22
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	98.21
KOG1534	273	consensus Putative transcription factor FET5 [Tran	98.19
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	98.16
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.12
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.11
PRK13695	174	putative NTPase; Provisional	98.06
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	98.06
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	98.05
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.05
PRK00771	437	signal recognition particle protein Srp54; Provisi	98.02
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	98.01
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	98.0
PRK11537	318	putative GTP-binding protein YjiA; Provisional	97.97
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.96
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.94
PRK10867	433	signal recognition particle protein; Provisional	97.93
TIGR00959	428	ffh signal recognition particle protein. This mode	97.93
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.92
KOG2484	435	consensus GTPase [General function prediction only	97.92
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.9
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.89
COG3523	1188	IcmF Type VI protein secretion system component Va	97.89
PRK08118	167	topology modulation protein; Reviewed	97.88
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.88
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.87
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.86
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.86
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.86
KOG1533	290	consensus Predicted GTPase [General function predi	97.86
PRK07261	171	topology modulation protein; Provisional	97.85
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.8
cd03111	106	CpaE_like This protein family consists of proteins	97.8
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.78
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.77
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.75
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.75
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.73
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	97.73
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	97.73
KOG2423	572	consensus Nucleolar GTPase [General function predi	97.72
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.72
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.71
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.71
COG1162	301	Predicted GTPases [General function prediction onl	97.69
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.68
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.68
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.66
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.66
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.66
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.66
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.66
PRK01889	356	GTPase RsgA; Reviewed	97.64
PRK14530	215	adenylate kinase; Provisional	97.64
PRK05480	209	uridine/cytidine kinase; Provisional	97.63
cd03116	159	MobB Molybdenum is an essential trace element in t	97.61
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.6
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.59
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.59
PRK06217	183	hypothetical protein; Validated	97.59
PRK03839	180	putative kinase; Provisional	97.57
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.56
PRK08233	182	hypothetical protein; Provisional	97.56
smart00382	148	AAA ATPases associated with a variety of cellular	97.55
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.55
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	97.54
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.54
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	97.54
PF00004	132	AAA: ATPase family associated with various cellula	97.54
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.53
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.52
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.52
PRK14738	206	gmk guanylate kinase; Provisional	97.51
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	97.51
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	97.51
PRK06547	172	hypothetical protein; Provisional	97.5
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.5
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.49
COG3638	258	ABC-type phosphate/phosphonate transport system, A	97.49
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.49
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.48
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	97.47
PRK14737	186	gmk guanylate kinase; Provisional	97.47
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	97.46
PRK13949	169	shikimate kinase; Provisional	97.45
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	97.45
PRK14531	183	adenylate kinase; Provisional	97.45
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.45
PRK14532	188	adenylate kinase; Provisional	97.44
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	97.44
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	97.44
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	97.44
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.44
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	97.43
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	97.43
PRK00300	205	gmk guanylate kinase; Provisional	97.42
COG4559	259	ABC-type hemin transport system, ATPase component	97.42
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	97.42
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	97.42
PTZ00088	229	adenylate kinase 1; Provisional	97.41
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	97.41
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	97.41
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	97.41
KOG4273	418	consensus Uncharacterized conserved protein [Funct	97.41
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	97.41

>PLN00223 ADP-ribosylation factor; Provisional

Probab=100.00  E-value=2.7e-39  Score=220.17  Aligned_cols=179  Identities=84%  Similarity=1.349  Sum_probs=157.7

Q ss_pred             CcchHHHH-hhhcccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHh
Q 030289            1 MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRH   79 (180)
Q Consensus         1 ~~~~~~~~-~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~   79 (180)
                      ||..++.+ ++.+.++.+||+++|++|||||||++++..+.+..+.||++..+..+...++.+.+||+||+++++.++..
T Consensus         1 m~~~~~~~~~~~~~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~   80 (181)
T PLN00223          1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH   80 (181)
T ss_pred             CchHHHHHHHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHH
Confidence            88777766 55667788999999999999999999999887777789999888888888999999999999999999999


Q ss_pred             hccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeec
Q 030289           80 YFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACA  159 (180)
Q Consensus        80 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (180)
                      +++++|++++|||++++++++....++..++.....+++|+++++||+|+......+++...++......+.+.+++|||
T Consensus        81 ~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa  160 (181)
T PLN00223         81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA  160 (181)
T ss_pred             HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccC
Confidence            99999999999999999999999888888876544567999999999999887777787877777665566677889999


Q ss_pred             cCCCChHHHHHHHHHHhhhc
Q 030289          160 TSGQGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       160 ~~~~~i~~~~~~l~~~~~~~  179 (180)
                      ++|+|++++|++|.+.+.++
T Consensus       161 ~~g~gv~e~~~~l~~~~~~~  180 (181)
T PLN00223        161 TSGEGLYEGLDWLSNNIANK  180 (181)
T ss_pred             CCCCCHHHHHHHHHHHHhhc
Confidence            99999999999999998775

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=100.00  E-value=1.2e-38  Score=217.25  Aligned_cols=179  Identities=80%  Similarity=1.300  Sum_probs=155.6

Q ss_pred             CcchHHHH-hhhcccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHh
Q 030289            1 MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRH   79 (180)
Q Consensus         1 ~~~~~~~~-~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~   79 (180)
                      ||.+++.+ +..+.++++||+++|++|||||||++++..+.+..+.||.+..+..+..+++.+.+||+||+++++..+..
T Consensus         1 ~~~~~~~~~~~~~~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~   80 (182)
T PTZ00133          1 MGLWLSSAFKSLFGKKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRH   80 (182)
T ss_pred             CchHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence            88877766 55667788999999999999999999998877667788999888888889999999999999999999999


Q ss_pred             hccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeec
Q 030289           80 YFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACA  159 (180)
Q Consensus        80 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (180)
                      +++++|++++|+|+++++++.....++..++......++|+++|+||+|+.+....+++...++....+...+.++++||
T Consensus        81 ~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa  160 (182)
T PTZ00133         81 YYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCA  160 (182)
T ss_pred             HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeC
Confidence            99999999999999999999999888888866544457899999999999776666677777777666666778889999


Q ss_pred             cCCCChHHHHHHHHHHhhhc
Q 030289          160 TSGQGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       160 ~~~~~i~~~~~~l~~~~~~~  179 (180)
                      ++|.|++++|++|.+.+.++
T Consensus       161 ~tg~gv~e~~~~l~~~i~~~  180 (182)
T PTZ00133        161 TTAQGLYEGLDWLSANIKKS  180 (182)
T ss_pred             CCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999887654

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=100.00  E-value=1.2e-37  Score=211.13  Aligned_cols=174  Identities=80%  Similarity=1.304  Sum_probs=149.8

Q ss_pred             CcchHHHHhhhcccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhh
Q 030289            1 MGMVISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHY   80 (180)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~   80 (180)
                      ||...+   ..+.++.+||+++|++|||||||++++..+.+..+.||++..+..+....+.+.+||+||++.++..+..+
T Consensus         1 ~~~~~~---~~~~~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~   77 (175)
T smart00177        1 MGKLFS---KLFGNKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHY   77 (175)
T ss_pred             Cchhhh---hhcCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHH
Confidence            676544   33556789999999999999999999987776677899998888888888999999999999999999999


Q ss_pred             ccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeecc
Q 030289           81 FQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACAT  160 (180)
Q Consensus        81 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  160 (180)
                      ++++|++++|+|++++++++....|+..+......+++|+++|+||+|+.+....+++...++......+.+.++++||+
T Consensus        78 ~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~  157 (175)
T smart00177       78 YTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCAT  157 (175)
T ss_pred             hCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCC
Confidence            99999999999999999999999999888765444678999999999998766667777777766666667788899999


Q ss_pred             CCCChHHHHHHHHHHhh
Q 030289          161 SGQGLYEGLDWLSSNVS  177 (180)
Q Consensus       161 ~~~~i~~~~~~l~~~~~  177 (180)
                      +|.|++++|++|.+.+.
T Consensus       158 ~g~gv~e~~~~l~~~~~  174 (175)
T smart00177      158 SGDGLYEGLTWLSNNLK  174 (175)
T ss_pred             CCCCHHHHHHHHHHHhc
Confidence            99999999999988753

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04149 Arf6 Arf6 subfamily

Probab=100.00  E-value=1.1e-37  Score=210.03  Aligned_cols=164  Identities=74%  Similarity=1.261  Sum_probs=143.0

Q ss_pred             hcccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289           11 LFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV   90 (180)
Q Consensus        11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (180)
                      ++.++.+||+++|++|||||||++++..+.+..+.||++..+..+...++.+.+|||||+++++..++.+++++|++++|
T Consensus         4 ~~~~~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v   83 (168)
T cd04149           4 LFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV   83 (168)
T ss_pred             ccCCCccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence            35567899999999999999999999987776778899988877878889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHH
Q 030289           91 VDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLD  170 (180)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  170 (180)
                      ||++++.+++....|+..++......++|+++|+||+|+......+++...++........+.++++||++|.|++++|+
T Consensus        84 ~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~  163 (168)
T cd04149          84 VDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLT  163 (168)
T ss_pred             EeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHH
Confidence            99999999999999998887654446789999999999977666677777766655555667899999999999999999


Q ss_pred             HHHH
Q 030289          171 WLSS  174 (180)
Q Consensus       171 ~l~~  174 (180)
                      +|.+
T Consensus       164 ~l~~  167 (168)
T cd04149         164 WLSS  167 (168)
T ss_pred             HHhc
Confidence            9875

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.5e-38  Score=207.68  Aligned_cols=166  Identities=18%  Similarity=0.330  Sum_probs=143.3

Q ss_pred             hcccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEEEEE----cCeEEEEEEcCCCCCChhhHHhhccccC
Q 030289           11 LFARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWRHYFQNTH   85 (180)
Q Consensus        11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~   85 (180)
                      ..+.+.+|++|+|+.+|||||||+||+.+. ..+|.+|+|+++....+    ..+.+++|||+||++|+.+.+.|++++.
T Consensus        17 ~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~   96 (221)
T KOG0094|consen   17 GAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   96 (221)
T ss_pred             CccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCe
Confidence            345677999999999999999999999998 66788999987755444    4678999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCCh
Q 030289           86 GLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGL  165 (180)
Q Consensus        86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  165 (180)
                      ++|+|||+++..+|+...+|+.++.......++-+++|+||.||.+.+..   ..+.+...+++.++.|+++||+.|.||
T Consensus        97 vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqv---s~eEg~~kAkel~a~f~etsak~g~NV  173 (221)
T KOG0094|consen   97 VAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQV---SIEEGERKAKELNAEFIETSAKAGENV  173 (221)
T ss_pred             EEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhh---hHHHHHHHHHHhCcEEEEecccCCCCH
Confidence            99999999999999999999999988776556889999999999986543   334444566777889999999999999


Q ss_pred             HHHHHHHHHHhhhc
Q 030289          166 YEGLDWLSSNVSAK  179 (180)
Q Consensus       166 ~~~~~~l~~~~~~~  179 (180)
                      +++|..|..++...
T Consensus       174 k~lFrrIaa~l~~~  187 (221)
T KOG0094|consen  174 KQLFRRIAAALPGM  187 (221)
T ss_pred             HHHHHHHHHhccCc
Confidence            99999998877643

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.7e-38  Score=207.40  Aligned_cols=162  Identities=23%  Similarity=0.379  Sum_probs=135.8

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEE--EEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVET--VEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLI   88 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   88 (180)
                      ..-|||+++|++|||||+|+.||+.+. ..++..|+|+++..  +.+  +.++++||||+||++++.....||+++|++|
T Consensus         7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii   86 (205)
T KOG0084|consen    7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   86 (205)
T ss_pred             ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence            457999999999999999999999999 55677899977654  333  6789999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceE-EEEeeccCCCChHH
Q 030289           89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWY-IQAACATSGQGLYE  167 (180)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~  167 (180)
                      +|||+++.++|+.+..|+.++..+. ...+|.++|+||||+.+...+..   ..+..++...+++ ++++||+++.||++
T Consensus        87 ~vyDiT~~~SF~~v~~Wi~Ei~~~~-~~~v~~lLVGNK~Dl~~~~~v~~---~~a~~fa~~~~~~~f~ETSAK~~~NVe~  162 (205)
T KOG0084|consen   87 FVYDITKQESFNNVKRWIQEIDRYA-SENVPKLLVGNKCDLTEKRVVST---EEAQEFADELGIPIFLETSAKDSTNVED  162 (205)
T ss_pred             EEEEcccHHHhhhHHHHHHHhhhhc-cCCCCeEEEeeccccHhheecCH---HHHHHHHHhcCCcceeecccCCccCHHH
Confidence            9999999999999999999996654 45689999999999987543221   1112233445566 99999999999999


Q ss_pred             HHHHHHHHhhhc
Q 030289          168 GLDWLSSNVSAK  179 (180)
Q Consensus       168 ~~~~l~~~~~~~  179 (180)
                      +|..+...+.++
T Consensus       163 ~F~~la~~lk~~  174 (205)
T KOG0084|consen  163 AFLTLAKELKQR  174 (205)
T ss_pred             HHHHHHHHHHHh
Confidence            999999988765

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.2e-38  Score=205.32  Aligned_cols=161  Identities=20%  Similarity=0.387  Sum_probs=137.2

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCCcccc-ccccceeEEEEEE--c--CeEEEEEEcCCCCCChhhHHhhccccCEE
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEY--K--NVSFTVWDVGGQDKIRPLWRHYFQNTHGL   87 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~-~~t~~~~~~~~~~--~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   87 (180)
                      ....+|++++|..+||||||+-|+..+.+.++ .||+|..+.+...  .  .+++.||||+|+++|.++.+.||++++++
T Consensus         2 ~~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AA   81 (200)
T KOG0092|consen    2 ATREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAA   81 (200)
T ss_pred             CcceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEE
Confidence            35689999999999999999999999997775 7899977665444  4  48899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCCh
Q 030289           88 IFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGL  165 (180)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  165 (180)
                      |+|||+++.+||..++.|+.++.+... +++.+.+||||+|+.+.+.  .++..     ..+.+.+..||++||+++.||
T Consensus        82 ivvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~-----~yAe~~gll~~ETSAKTg~Nv  155 (200)
T KOG0092|consen   82 IVVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEAQ-----AYAESQGLLFFETSAKTGENV  155 (200)
T ss_pred             EEEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHHH-----HHHHhcCCEEEEEecccccCH
Confidence            999999999999999999999977654 7788889999999988443  32222     233456778999999999999


Q ss_pred             HHHHHHHHHHhhhc
Q 030289          166 YEGLDWLSSNVSAK  179 (180)
Q Consensus       166 ~~~~~~l~~~~~~~  179 (180)
                      +++|..|.+.+...
T Consensus       156 ~~if~~Ia~~lp~~  169 (200)
T KOG0092|consen  156 NEIFQAIAEKLPCS  169 (200)
T ss_pred             HHHHHHHHHhccCc
Confidence            99999999988654

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=100.00  E-value=2e-36  Score=202.27  Aligned_cols=158  Identities=91%  Similarity=1.424  Sum_probs=137.4

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCCh
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDR   96 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~   96 (180)
                      +||+++|.+|||||||++++..+.+..+.||++.....+..+.+.+.+||+||++++...+..+++++|++++|+|++++
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~   80 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR   80 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCH
Confidence            58999999999999999999888766778999988877888899999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHH
Q 030289           97 ERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSS  174 (180)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  174 (180)
                      ++++....++..+.......+.|+++++||+|+.+....+++...++........+.++++||++|.|++++|++|.+
T Consensus        81 ~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~  158 (159)
T cd04150          81 ERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN  158 (159)
T ss_pred             HHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence            999999998888876544457899999999999765555566666666555566778899999999999999999864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.2e-36  Score=196.43  Aligned_cols=179  Identities=78%  Similarity=1.270  Sum_probs=170.5

Q ss_pred             CcchHHHH-hhhcccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHh
Q 030289            1 MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRH   79 (180)
Q Consensus         1 ~~~~~~~~-~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~   79 (180)
                      ||..++++ ...+..++.+|+++|.-+|||||++++|..++..+..||+|++..++.++++.+.+||.+|+++++..|+.
T Consensus         1 MG~~~s~~~~~~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~   80 (181)
T KOG0070|consen    1 MGLIFSKLFSGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKH   80 (181)
T ss_pred             CcchhhhhhhhccCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEEcceEEEEEecCCCcccccchhh
Confidence            89999988 55889999999999999999999999999999888899999999999999999999999999999999999


Q ss_pred             hccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeec
Q 030289           80 YFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACA  159 (180)
Q Consensus        80 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (180)
                      |+++.+++|||+|.+|++.+.+....+..++........|+++++||.|++..-+..++.+.+++.....+.+.+..|||
T Consensus        81 Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a  160 (181)
T KOG0070|consen   81 YFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCA  160 (181)
T ss_pred             hccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccc
Confidence            99999999999999999999999999999988877789999999999999999999999999999999999999999999


Q ss_pred             cCCCChHHHHHHHHHHhhhc
Q 030289          160 TSGQGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       160 ~~~~~i~~~~~~l~~~~~~~  179 (180)
                      .+|+|+.|.++++.+.+..+
T Consensus       161 ~~G~GL~egl~wl~~~~~~~  180 (181)
T KOG0070|consen  161 ISGEGLYEGLDWLSNNLKKR  180 (181)
T ss_pred             cccccHHHHHHHHHHHHhcc
Confidence            99999999999999988765

>cd04154 Arl2 Arl2 subfamily

Probab=100.00  E-value=2.2e-35  Score=199.87  Aligned_cols=166  Identities=49%  Similarity=0.879  Sum_probs=141.9

Q ss_pred             hhhcccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289            9 KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLI   88 (180)
Q Consensus         9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   88 (180)
                      +...++..+||+++|++|||||||++++.+.....+.+|+++....+..++..+.+||+||++.++..+..+++++|+++
T Consensus         7 ~~~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   86 (173)
T cd04154           7 KQKLKEREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALI   86 (173)
T ss_pred             hhhcCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            44556778999999999999999999999887767778988888888888899999999999999889999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289           89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG  168 (180)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (180)
                      +|+|++++++++....|+..++......+.|+++|+||+|+.+....+++...+........+++++++||++|.|++++
T Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l  166 (173)
T cd04154          87 WVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQG  166 (173)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHH
Confidence            99999999999998888888876544568999999999999876666666665554434456789999999999999999


Q ss_pred             HHHHHH
Q 030289          169 LDWLSS  174 (180)
Q Consensus       169 ~~~l~~  174 (180)
                      |+++.+
T Consensus       167 ~~~l~~  172 (173)
T cd04154         167 IDWLVD  172 (173)
T ss_pred             HHHHhc
Confidence            999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=4.8e-35  Score=198.19  Aligned_cols=168  Identities=52%  Similarity=0.977  Sum_probs=154.1

Q ss_pred             hhhcc-cCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEE
Q 030289            9 KMLFA-RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGL   87 (180)
Q Consensus         9 ~~~~~-~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   87 (180)
                      ++... .+++||+++|+.||||||+++++..+......||.+++...+...+..+.+||.+|+..++..|+.+++++|++
T Consensus         6 ~~~~~~~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~i   85 (175)
T PF00025_consen    6 SKLKSKKKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGI   85 (175)
T ss_dssp             HHCTTTTSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred             HHhcccCcEEEEEEECCCccchHHHHHHhhhccccccCcccccccceeeeCcEEEEEEeccccccccccceeecccccee
Confidence            34443 88999999999999999999999988877789999999999999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccC-CcceEEEEeeccCCCChH
Q 030289           88 IFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLR-QRRWYIQAACATSGQGLY  166 (180)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~  166 (180)
                      +||+|+++.+.+.+....+..++......++|+++++||+|+.+....+++...+.+.... .+.+.++.||+.+|+|++
T Consensus        86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~  165 (175)
T PF00025_consen   86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVD  165 (175)
T ss_dssp             EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHH
T ss_pred             EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHH
Confidence            9999999999999999999999887767789999999999999888888888888777765 778899999999999999


Q ss_pred             HHHHHHHHHh
Q 030289          167 EGLDWLSSNV  176 (180)
Q Consensus       167 ~~~~~l~~~~  176 (180)
                      +.++||.+++
T Consensus       166 e~l~WL~~~~  175 (175)
T PF00025_consen  166 EGLEWLIEQI  175 (175)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhcC
Confidence            9999999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd04158 ARD1 ARD1 subfamily

Probab=100.00  E-value=5.9e-35  Score=197.05  Aligned_cols=162  Identities=61%  Similarity=1.069  Sum_probs=138.4

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChh
Q 030289           18 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRE   97 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~   97 (180)
                      ||+++|++|||||||++++.+..+..+.||++..+..+..+++.+.+||+||+.++...+..+++++|++++|+|+++++
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~   80 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRD   80 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHH
Confidence            68999999999999999999888767889999888888889999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCcc-CCcceEEEEeeccCCCChHHHHHHHHHHh
Q 030289           98 RIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSL-RQRRWYIQAACATSGQGLYEGLDWLSSNV  176 (180)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  176 (180)
                      ++.....|+..+.+.....+.|+++|+||+|+.+....+++......... ....+.+++|||++|.||+++|++|.+.+
T Consensus        81 s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~  160 (169)
T cd04158          81 RVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL  160 (169)
T ss_pred             HHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHH
Confidence            99999999999986654567899999999999766666666555433221 22345789999999999999999999887


Q ss_pred             hhc
Q 030289          177 SAK  179 (180)
Q Consensus       177 ~~~  179 (180)
                      .+.
T Consensus       161 ~~~  163 (169)
T cd04158         161 VAA  163 (169)
T ss_pred             hhc
Confidence            653

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=100.00  E-value=5.6e-35  Score=198.03  Aligned_cols=169  Identities=55%  Similarity=0.974  Sum_probs=144.4

Q ss_pred             HHHhhhc-ccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhcccc
Q 030289            6 SRLKMLF-ARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNT   84 (180)
Q Consensus         6 ~~~~~~~-~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   84 (180)
                      ..+-+.+ +++.+||+++|++|+|||||++++..+.+..+.||.+..+..+..++.++.+||+||++.+...+..+++++
T Consensus         4 ~~~~~~~~~~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~   83 (174)
T cd04153           4 SSLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNT   83 (174)
T ss_pred             hHHHHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcC
Confidence            3443344 456899999999999999999999988866778899988888888899999999999999999999999999


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCC
Q 030289           85 HGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQG  164 (180)
Q Consensus        85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  164 (180)
                      |++++|+|+++++++.....++..+.......++|+++++||+|+......+++.+.++........++++++||++|.|
T Consensus        84 d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~g  163 (174)
T cd04153          84 DAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEG  163 (174)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCC
Confidence            99999999999998888888888887654446799999999999977556667777777665556677899999999999


Q ss_pred             hHHHHHHHHH
Q 030289          165 LYEGLDWLSS  174 (180)
Q Consensus       165 i~~~~~~l~~  174 (180)
                      ++++|++|.+
T Consensus       164 i~e~~~~l~~  173 (174)
T cd04153         164 LPEGLDWIAS  173 (174)
T ss_pred             HHHHHHHHhc
Confidence            9999999975

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3e-35  Score=183.35  Aligned_cols=178  Identities=67%  Similarity=1.160  Sum_probs=171.1

Q ss_pred             CcchHHHH-hhhcccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHh
Q 030289            1 MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRH   79 (180)
Q Consensus         1 ~~~~~~~~-~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~   79 (180)
                      ||..|+.+ .+.+..++++|+.+|..++||||++..|+.+......||+|++..++.++++.+.+||.+|+++.+..|++
T Consensus         1 Mgn~~sk~~~k~f~~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrh   80 (180)
T KOG0071|consen    1 MGNYMSKLLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRH   80 (180)
T ss_pred             CcchHHHHHHHHhCcccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHh
Confidence            89889988 88899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeec
Q 030289           80 YFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACA  159 (180)
Q Consensus        80 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (180)
                      |+.+..++|||+|+.+++.+++.+..+..++..++....|+++.+||-|++....+.++.+.+.+..++.+.+.+.++|+
T Consensus        81 Yy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a  160 (180)
T KOG0071|consen   81 YYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCA  160 (180)
T ss_pred             hccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeecccc
Confidence            99999999999999999999999999999999988889999999999999999999999999999999999999999999


Q ss_pred             cCCCChHHHHHHHHHHhhh
Q 030289          160 TSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       160 ~~~~~i~~~~~~l~~~~~~  178 (180)
                      .+|+++.|-+.|+.+.+..
T Consensus       161 ~~gdgL~eglswlsnn~~~  179 (180)
T KOG0071|consen  161 LSGDGLKEGLSWLSNNLKE  179 (180)
T ss_pred             ccchhHHHHHHHHHhhccC
Confidence            9999999999999987764

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.8e-35  Score=197.33  Aligned_cols=164  Identities=21%  Similarity=0.378  Sum_probs=137.5

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE--EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCE
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE--TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHG   86 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   86 (180)
                      .....+||+++|++|||||+++.+|..+.+ ..+..|+++++.  ++..  ..+.+++|||+||++++..+..|+++|++
T Consensus         8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g   87 (207)
T KOG0078|consen    8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG   87 (207)
T ss_pred             CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence            346789999999999999999999999884 455678886654  4544  55789999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChH
Q 030289           87 LIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLY  166 (180)
Q Consensus        87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  166 (180)
                      +++|||++++.+++.+..|+..+-.+. ..++|.++|+||+|+...+.+   ..+.+...+...+++|++|||++|.||+
T Consensus        88 i~LvyDitne~Sfeni~~W~~~I~e~a-~~~v~~~LvGNK~D~~~~R~V---~~e~ge~lA~e~G~~F~EtSAk~~~NI~  163 (207)
T KOG0078|consen   88 ILLVYDITNEKSFENIRNWIKNIDEHA-SDDVVKILVGNKCDLEEKRQV---SKERGEALAREYGIKFFETSAKTNFNIE  163 (207)
T ss_pred             eEEEEEccchHHHHHHHHHHHHHHhhC-CCCCcEEEeeccccccccccc---cHHHHHHHHHHhCCeEEEccccCCCCHH
Confidence            999999999999999999999886654 358999999999999874432   2233334445668899999999999999


Q ss_pred             HHHHHHHHHhhhc
Q 030289          167 EGLDWLSSNVSAK  179 (180)
Q Consensus       167 ~~~~~l~~~~~~~  179 (180)
                      |+|-.+++.+.++
T Consensus       164 eaF~~La~~i~~k  176 (207)
T KOG0078|consen  164 EAFLSLARDILQK  176 (207)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999998754

>cd04151 Arl1 Arl1 subfamily

Probab=100.00  E-value=3.2e-34  Score=191.53  Aligned_cols=157  Identities=64%  Similarity=1.124  Sum_probs=133.7

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChh
Q 030289           18 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRE   97 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~   97 (180)
                      ||+++|++++|||||++++..+....+.||++.....+...+..+++|||||+..++..+..+++++|++++|+|++++.
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~   80 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD   80 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHH
Confidence            68999999999999999998887666778888888778888899999999999999999999999999999999999988


Q ss_pred             hHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHH
Q 030289           98 RIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSS  174 (180)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  174 (180)
                      ++.....++..++......+.|+++|+||+|+.+.....++...++.......+.+++++||++|.|++++|+++.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  157 (158)
T cd04151          81 RLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN  157 (158)
T ss_pred             HHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence            88777777776655444457999999999999866556666666655545555678999999999999999999975

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=1e-34  Score=198.39  Aligned_cols=159  Identities=18%  Similarity=0.263  Sum_probs=128.6

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeE--EEEEEc--CeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV--ETVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLI   88 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   88 (180)
                      ...+||+++|+.|||||||+++|..+.+ .++.+|.+..+  ..+..+  .+.+.+|||+|+++|..+++.+++++|+++
T Consensus         4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il   83 (189)
T cd04121           4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII   83 (189)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence            3569999999999999999999998774 34445665544  344444  478899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC--CHhHHHhHhCCCccCCcceEEEEeeccCCCChH
Q 030289           89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM--SVSEVTDKLGLHSLRQRRWYIQAACATSGQGLY  166 (180)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  166 (180)
                      +|||++++.+++.+..|+..+...  .++.|+++|+||+|+....  ..++..     ..++..++++++|||++|.||+
T Consensus        84 lVfD~t~~~Sf~~~~~w~~~i~~~--~~~~piilVGNK~DL~~~~~v~~~~~~-----~~a~~~~~~~~e~SAk~g~~V~  156 (189)
T cd04121          84 LVYDITNRWSFDGIDRWIKEIDEH--APGVPKILVGNRLHLAFKRQVATEQAQ-----AYAERNGMTFFEVSPLCNFNIT  156 (189)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECccchhccCCCHHHHH-----HHHHHcCCEEEEecCCCCCCHH
Confidence            999999999999999999998654  3689999999999996533  222222     1223456789999999999999


Q ss_pred             HHHHHHHHHhhhc
Q 030289          167 EGLDWLSSNVSAK  179 (180)
Q Consensus       167 ~~~~~l~~~~~~~  179 (180)
                      ++|.++++.+..+
T Consensus       157 ~~F~~l~~~i~~~  169 (189)
T cd04121         157 ESFTELARIVLMR  169 (189)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999887643

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=100.00  E-value=3.9e-34  Score=182.81  Aligned_cols=175  Identities=46%  Similarity=0.832  Sum_probs=158.8

Q ss_pred             HHHH-hhhcccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccc
Q 030289            5 ISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQN   83 (180)
Q Consensus         5 ~~~~-~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   83 (180)
                      ++-+ +.-.++++++|+++|+.||||||++++|.+.......||.++...++..+++++++||.+|+..++..|+.||..
T Consensus         4 lsilrk~k~kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfes   83 (185)
T KOG0073|consen    4 LSILRKQKLKEREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFES   83 (185)
T ss_pred             HHHHHHHHhhhheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhc
Confidence            3444 444467899999999999999999999998888888899999999999999999999999999999999999999


Q ss_pred             cCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCcc-CCcceEEEEeeccCC
Q 030289           84 THGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSL-RQRRWYIQAACATSG  162 (180)
Q Consensus        84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~  162 (180)
                      .|++|+|+|++|+.++++....+...+......+.|+++++||.|+..+...+++...+.+... ++.+++++.||+.+|
T Consensus        84 tdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tg  163 (185)
T KOG0073|consen   84 TDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTG  163 (185)
T ss_pred             cCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEecccc
Confidence            9999999999999999999999888887666678999999999999988888888888887766 888999999999999


Q ss_pred             CChHHHHHHHHHHhhhc
Q 030289          163 QGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       163 ~~i~~~~~~l~~~~~~~  179 (180)
                      +++.+.++|+.+.+.++
T Consensus       164 e~l~~gidWL~~~l~~r  180 (185)
T KOG0073|consen  164 EDLLEGIDWLCDDLMSR  180 (185)
T ss_pred             ccHHHHHHHHHHHHHHH
Confidence            99999999999887653

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=8.3e-35  Score=196.72  Aligned_cols=162  Identities=19%  Similarity=0.245  Sum_probs=128.9

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCCcc-ccccccceeEE-EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV   90 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (180)
                      +.+||+++|.+|||||||++++..+.+. .+.||++..+. .+..  ..+.+.+|||||++++..++..+++.+|++++|
T Consensus         1 ~~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           1 REYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            3589999999999999999999988854 56678875443 3444  347899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHH
Q 030289           91 VDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLD  170 (180)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  170 (180)
                      ||++++.+++.+..|+..+.......++|+++|+||+|+.+.......   .+...++..++++++|||++|.||+++|+
T Consensus        81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~---~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~  157 (172)
T cd04141          81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTE---EGRNLAREFNCPFFETSAALRHYIDDAFH  157 (172)
T ss_pred             EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHH---HHHHHHHHhCCEEEEEecCCCCCHHHHHH
Confidence            999999999999988766654333467999999999998654322211   11122234467899999999999999999


Q ss_pred             HHHHHhhhc
Q 030289          171 WLSSNVSAK  179 (180)
Q Consensus       171 ~l~~~~~~~  179 (180)
                      ++++.+.++
T Consensus       158 ~l~~~~~~~  166 (172)
T cd04141         158 GLVREIRRK  166 (172)
T ss_pred             HHHHHHHHh
Confidence            999887654

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.3e-35  Score=189.11  Aligned_cols=162  Identities=21%  Similarity=0.382  Sum_probs=139.5

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCcccccc-ccceeEE--EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVE--TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLI   88 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~-t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   88 (180)
                      ...+||++||.+|+|||||+-+|..+.+....| |+|+++.  .+.+  ..+++.||||+|+++|+.+++.||+++.++|
T Consensus         9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI   88 (209)
T KOG0080|consen    9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII   88 (209)
T ss_pred             ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence            557999999999999999999999988776666 4776554  3333  6688999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289           89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG  168 (180)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (180)
                      +|||++.+++|..+..|+.++-.+--.+++..++|+||.|..+++.   +..+.++.+++++...|++|||++.+||+.+
T Consensus        89 lVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~---V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~  165 (209)
T KOG0080|consen   89 LVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERV---VDREEGLKFARKHRCLFIECSAKTRENVQCC  165 (209)
T ss_pred             EEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhccc---ccHHHHHHHHHhhCcEEEEcchhhhccHHHH
Confidence            9999999999999999999886665567888899999999775442   3446667778888899999999999999999


Q ss_pred             HHHHHHHhhh
Q 030289          169 LDWLSSNVSA  178 (180)
Q Consensus       169 ~~~l~~~~~~  178 (180)
                      |++++.++.+
T Consensus       166 FeelveKIi~  175 (209)
T KOG0080|consen  166 FEELVEKIIE  175 (209)
T ss_pred             HHHHHHHHhc
Confidence            9999999875

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=100.00  E-value=1e-33  Score=193.32  Aligned_cols=172  Identities=35%  Similarity=0.583  Sum_probs=145.6

Q ss_pred             hHHHHhhhcc--cCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhc
Q 030289            4 VISRLKMLFA--RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYF   81 (180)
Q Consensus         4 ~~~~~~~~~~--~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~   81 (180)
                      +++.+-+.+.  .+.++|+++|++|||||||++++.++.+..+.||.+.....+..++.++.+||+||+..++..+..++
T Consensus         3 ~~~~~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~   82 (184)
T smart00178        3 WFYDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYF   82 (184)
T ss_pred             HHHHHHHHhccccccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHh
Confidence            4455523452  78899999999999999999999988766667888887777888899999999999999999999999


Q ss_pred             cccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccC-------CcceEE
Q 030289           82 QNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLR-------QRRWYI  154 (180)
Q Consensus        82 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~-------~~~~~~  154 (180)
                      .++|++++|+|+++++++.....++..+.......++|+++|+||+|+......+++.+.+++....       .....+
T Consensus        83 ~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i  162 (184)
T smart00178       83 PEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEV  162 (184)
T ss_pred             CCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEE
Confidence            9999999999999999998888888887765445678999999999998777788888887765432       245679


Q ss_pred             EEeeccCCCChHHHHHHHHHH
Q 030289          155 QAACATSGQGLYEGLDWLSSN  175 (180)
Q Consensus       155 ~~~Sa~~~~~i~~~~~~l~~~  175 (180)
                      ++|||+++.|++++++||.+.
T Consensus       163 ~~~Sa~~~~g~~~~~~wl~~~  183 (184)
T smart00178      163 FMCSVVRRMGYGEGFKWLSQY  183 (184)
T ss_pred             EEeecccCCChHHHHHHHHhh
Confidence            999999999999999999865

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=3.5e-35  Score=199.71  Aligned_cols=164  Identities=15%  Similarity=0.214  Sum_probs=129.0

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE-EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE-TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLI   88 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   88 (180)
                      +..++||+++|++|||||||++++..+.+ ..+.||++..+. .+..  ..+.+.+|||+|+++|..+++.+++++|+++
T Consensus         2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i   81 (182)
T cd04172           2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   81 (182)
T ss_pred             CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence            35688999999999999999999998884 556788875543 3333  4578999999999999999999999999999


Q ss_pred             EEEECCChhhHHHH-HHHHHHHhcccccCCCeEEEEEecCCCCCCCCH---------hHHHhHhCCCccCCcce-EEEEe
Q 030289           89 FVVDSNDRERIGEA-KDELHRMLSEDELREAVLLVFANKQDLPNAMSV---------SEVTDKLGLHSLRQRRW-YIQAA  157 (180)
Q Consensus        89 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~  157 (180)
                      +|||++++++++.+ ..|+..+...  .++.|+++|+||+|+.+....         ..+....+...++..++ +|++|
T Consensus        82 lvyDit~~~Sf~~~~~~w~~~i~~~--~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~  159 (182)
T cd04172          82 ICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  159 (182)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence            99999999999997 6888877554  257899999999998642100         01112222333445564 89999


Q ss_pred             eccCCCC-hHHHHHHHHHHhhh
Q 030289          158 CATSGQG-LYEGLDWLSSNVSA  178 (180)
Q Consensus       158 Sa~~~~~-i~~~~~~l~~~~~~  178 (180)
                      ||++|.| |+++|..+++.+..
T Consensus       160 SAk~~~n~v~~~F~~~~~~~~~  181 (182)
T cd04172         160 SALQSENSVRDIFHVATLACVN  181 (182)
T ss_pred             CcCCCCCCHHHHHHHHHHHHhc
Confidence            9999998 99999999997654

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=5.3e-35  Score=200.76  Aligned_cols=162  Identities=19%  Similarity=0.244  Sum_probs=126.4

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE-EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE-TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV   90 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (180)
                      ..+||+++|+.|||||||++++..+.+ ..+.||++..+. .+..  ..+.+.+|||+|+++|+.+++.+++++|++++|
T Consensus         2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv   81 (191)
T cd01875           2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC   81 (191)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence            568999999999999999999998885 566788875543 2223  457899999999999999999999999999999


Q ss_pred             EECCChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCCCC-HhHHHh--------HhCCCccCCcc-eEEEEeec
Q 030289           91 VDSNDRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNAMS-VSEVTD--------KLGLHSLRQRR-WYIQAACA  159 (180)
Q Consensus        91 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~-~~~~~~--------~~~~~~~~~~~-~~~~~~Sa  159 (180)
                      ||++++++++.+. .|+..+...  .+++|+++|+||+|+.+... .+.+..        ..+...++..+ +++++|||
T Consensus        82 ydit~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA  159 (191)
T cd01875          82 FSIASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA  159 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence            9999999999997 577666433  35799999999999975432 111111        11111222334 58999999


Q ss_pred             cCCCChHHHHHHHHHHhhh
Q 030289          160 TSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       160 ~~~~~i~~~~~~l~~~~~~  178 (180)
                      ++|.||+++|.++++.+..
T Consensus       160 k~g~~v~e~f~~l~~~~~~  178 (191)
T cd01875         160 LNQDGVKEVFAEAVRAVLN  178 (191)
T ss_pred             CCCCCHHHHHHHHHHHHhc
Confidence            9999999999999988754

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3e-35  Score=191.80  Aligned_cols=162  Identities=21%  Similarity=0.356  Sum_probs=139.5

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCcccc-ccccceeEE----EEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE----TVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLI   88 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~-~~t~~~~~~----~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   88 (180)
                      ...||++++|+.|||||+|+-+|+.+++.+. ..|+|+.+.    +++.+.+++++|||+|++.+++.+..||+.+.+++
T Consensus         4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal   83 (216)
T KOG0098|consen    4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL   83 (216)
T ss_pred             cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence            5679999999999999999999999995544 458886653    34447789999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289           89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG  168 (180)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (180)
                      +|||++++++|..+..|+.++..+. .++..+++++||||+...+   ++..+.+..++++++..++++||+++.||+|+
T Consensus        84 LVydit~r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~~rR---~Vs~EEGeaFA~ehgLifmETSakt~~~VEEa  159 (216)
T KOG0098|consen   84 LVYDITRRESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLEARR---EVSKEEGEAFAREHGLIFMETSAKTAENVEEA  159 (216)
T ss_pred             EEEEccchhhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhhccc---cccHHHHHHHHHHcCceeehhhhhhhhhHHHH
Confidence            9999999999999999999997653 4688999999999998765   33445566777788889999999999999999


Q ss_pred             HHHHHHHhhhc
Q 030289          169 LDWLSSNVSAK  179 (180)
Q Consensus       169 ~~~l~~~~~~~  179 (180)
                      |......+..+
T Consensus       160 F~nta~~Iy~~  170 (216)
T KOG0098|consen  160 FINTAKEIYRK  170 (216)
T ss_pred             HHHHHHHHHHH
Confidence            99998887654

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=3.2e-34  Score=197.63  Aligned_cols=157  Identities=20%  Similarity=0.357  Sum_probs=124.6

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCCcc-ccccccceeE--EEEEEc--CeEEEEEEcCCCCCChhhHHhhccccCEEEEEEE
Q 030289           18 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVD   92 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   92 (180)
                      .|+++|+.|||||||++++..+.+. .+.+|++..+  ..+..+  .+.+.+|||+|+++|+.++..+++++|++++|||
T Consensus         2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfD   81 (202)
T cd04120           2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYD   81 (202)
T ss_pred             EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEE
Confidence            5899999999999999999988854 4567776544  345554  4788999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCC-cceEEEEeeccCCCChHHHHHH
Q 030289           93 SNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQ-RRWYIQAACATSGQGLYEGLDW  171 (180)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~  171 (180)
                      ++++++++.+..|+..+... ...+.|+++|+||+|+.+........   +...+.. .++.|++|||++|.||+++|.+
T Consensus        82 vtd~~Sf~~l~~w~~~i~~~-~~~~~piilVgNK~DL~~~~~v~~~~---~~~~a~~~~~~~~~etSAktg~gV~e~F~~  157 (202)
T cd04120          82 ITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREISRQQ---GEKFAQQITGMRFCEASAKDNFNVDEIFLK  157 (202)
T ss_pred             CcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHH---HHHHHHhcCCCEEEEecCCCCCCHHHHHHH
Confidence            99999999999998866433 34579999999999996543322111   1111111 2467999999999999999999


Q ss_pred             HHHHhhh
Q 030289          172 LSSNVSA  178 (180)
Q Consensus       172 l~~~~~~  178 (180)
                      +++.+.+
T Consensus       158 l~~~~~~  164 (202)
T cd04120         158 LVDDILK  164 (202)
T ss_pred             HHHHHHH
Confidence            9988754

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04157 Arl6 Arl6 subfamily

Probab=100.00  E-value=9.4e-34  Score=189.84  Aligned_cols=157  Identities=47%  Similarity=0.832  Sum_probs=131.5

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCC--ccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCC
Q 030289           18 RILMVGLDAAGKTTILYKLKLGE--IVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSND   95 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~--~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~   95 (180)
                      +|+++|++|||||||+++|.+..  ...+.||++.....+...+..+.+|||||++++...+..+++++|++++|+|+++
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~   80 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD   80 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc
Confidence            58999999999999999999875  3456788888777777788999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcccc--cCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHH
Q 030289           96 RERIGEAKDELHRMLSEDE--LREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLS  173 (180)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~--~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  173 (180)
                      +.++.....|+..+.....  ..++|+++|+||+|+.+....+++...+.........++++++||++|.|++++|++|.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~  160 (162)
T cd04157          81 RLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQ  160 (162)
T ss_pred             HHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHh
Confidence            9998888888887765432  25799999999999987655555665555443334456799999999999999999987


Q ss_pred             H
Q 030289          174 S  174 (180)
Q Consensus       174 ~  174 (180)
                      +
T Consensus       161 ~  161 (162)
T cd04157         161 A  161 (162)
T ss_pred             c
Confidence            5

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=2.7e-34  Score=200.08  Aligned_cols=161  Identities=17%  Similarity=0.300  Sum_probs=128.9

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCCh
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDR   96 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~   96 (180)
                      +||+++|.+|||||||+++|..+.+..+.+|++..+.......+.+.+|||+|++.+..++..+++++|++++|||++++
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~   80 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNV   80 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCH
Confidence            58999999999999999999999876778898877766666788999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC-------------------C--CHhHHH---hHhCCC------c
Q 030289           97 ERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA-------------------M--SVSEVT---DKLGLH------S  146 (180)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~-------------------~--~~~~~~---~~~~~~------~  146 (180)
                      ++++.+..|+..+... ...+.|+++|+||+|+.++                   .  ..++..   +..+..      .
T Consensus        81 ~Sf~~l~~~~~~l~~~-~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~  159 (220)
T cd04126          81 QSLEELEDRFLGLTDT-ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDL  159 (220)
T ss_pred             HHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccc
Confidence            9999999988887654 2357899999999998651                   1  112111   111100      0


Q ss_pred             cCCcceEEEEeeccCCCChHHHHHHHHHHhhh
Q 030289          147 LRQRRWYIQAACATSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       147 ~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  178 (180)
                      .....++|++|||++|.||+++|..+++.+..
T Consensus       160 ~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~  191 (220)
T cd04126         160 SPAAEKMCFETSAKTGYNVDELFEYLFNLVLP  191 (220)
T ss_pred             cccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence            00112589999999999999999999987653

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=100.00  E-value=2.3e-33  Score=191.51  Aligned_cols=164  Identities=52%  Similarity=0.886  Sum_probs=134.3

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEE-----cCeEEEEEEcCCCCCChhhHHhhccccCEEEE
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-----KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF   89 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~-----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   89 (180)
                      ..+||+++|++|||||||++++..+.+..+.||.+.....+..     .++.+.+|||||++.+...+..+++++|++++
T Consensus         2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~   81 (183)
T cd04152           2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF   81 (183)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence            4689999999999999999999988866667888766554443     46889999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCcc-CCcceEEEEeeccCCCChHHH
Q 030289           90 VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSL-RQRRWYIQAACATSGQGLYEG  168 (180)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~~  168 (180)
                      |+|++++++++....|+..+.......+.|+++|+||+|+......+++......... ....++++++||++|.|++++
T Consensus        82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l  161 (183)
T cd04152          82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEG  161 (183)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHH
Confidence            9999999999888888887766544467999999999999765555555544443322 223467999999999999999


Q ss_pred             HHHHHHHhhh
Q 030289          169 LDWLSSNVSA  178 (180)
Q Consensus       169 ~~~l~~~~~~  178 (180)
                      +.++.+.+.+
T Consensus       162 ~~~l~~~l~~  171 (183)
T cd04152         162 LEKLYEMILK  171 (183)
T ss_pred             HHHHHHHHHH
Confidence            9999988754

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=100.00  E-value=1.7e-33  Score=189.57  Aligned_cols=157  Identities=36%  Similarity=0.615  Sum_probs=136.5

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChh
Q 030289           18 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRE   97 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~   97 (180)
                      +|+++|++|||||||++++.++....+.||++.....+..++..+.+||+||+..++..+..+++++|++++|+|++++.
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~   80 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDD   80 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchh
Confidence            48999999999999999999776566788999888888889999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccC---CcceEEEEeeccCC------CChHHH
Q 030289           98 RIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLR---QRRWYIQAACATSG------QGLYEG  168 (180)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~------~~i~~~  168 (180)
                      +++....|+..+.......++|+++|+||+|+.......++.+.+......   ...+.+++|||++|      .|+++.
T Consensus        81 s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~  160 (167)
T cd04161          81 RVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEG  160 (167)
T ss_pred             HHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHH
Confidence            999999999988766444679999999999998877777777766655442   23568899999998      899999


Q ss_pred             HHHHHH
Q 030289          169 LDWLSS  174 (180)
Q Consensus       169 ~~~l~~  174 (180)
                      |+||..
T Consensus       161 ~~wl~~  166 (167)
T cd04161         161 LRWLLA  166 (167)
T ss_pred             HHHHhc
Confidence            999975

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=1.6e-34  Score=195.37  Aligned_cols=160  Identities=19%  Similarity=0.215  Sum_probs=126.2

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCCcc-ccccccceeEE-EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEE
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVD   92 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   92 (180)
                      +||+++|++|+|||||+.++..+.+. ++.||++..+. .+..  ..+++.+|||+|+++++.++..+++++|++++|||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd   81 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   81 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence            68999999999999999999998854 57788875443 2333  45789999999999999999999999999999999


Q ss_pred             CCChhhHHHH-HHHHHHHhcccccCCCeEEEEEecCCCCCCCC-------HhHHHhHhCCCccCCcce-EEEEeeccCCC
Q 030289           93 SNDRERIGEA-KDELHRMLSEDELREAVLLVFANKQDLPNAMS-------VSEVTDKLGLHSLRQRRW-YIQAACATSGQ  163 (180)
Q Consensus        93 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  163 (180)
                      ++++++++.+ ..|+..+....  ++.|+++|+||+|+.+...       ...+..+.+...++..+. +|++|||++|.
T Consensus        82 ~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~  159 (176)
T cd04133          82 LISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ  159 (176)
T ss_pred             cCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence            9999999998 68988875442  5799999999999965321       001111122222334455 69999999999


Q ss_pred             ChHHHHHHHHHHhhh
Q 030289          164 GLYEGLDWLSSNVSA  178 (180)
Q Consensus       164 ~i~~~~~~l~~~~~~  178 (180)
                      ||+++|..+++.+.+
T Consensus       160 nV~~~F~~~~~~~~~  174 (176)
T cd04133         160 NVKAVFDAAIKVVLQ  174 (176)
T ss_pred             CHHHHHHHHHHHHhc
Confidence            999999999997654

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=100.00  E-value=2.4e-33  Score=187.21  Aligned_cols=157  Identities=74%  Similarity=1.215  Sum_probs=139.2

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChh
Q 030289           18 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRE   97 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~   97 (180)
                      ||+++|++|||||||+++++++....+.+|.+.....+......+.+||+||+..+...+..+++++|++++|||+++++
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~   80 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRE   80 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHH
Confidence            68999999999999999999988777788999888888888999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHH
Q 030289           98 RIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSS  174 (180)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  174 (180)
                      ++.....++..+.......+.|+++++||+|+......+++.+.++........++++++||++|.|++++|.+|.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~  157 (158)
T cd00878          81 RIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ  157 (158)
T ss_pred             HHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence            99999999888877655578999999999999887767777766665544556789999999999999999999875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=5.6e-34  Score=195.53  Aligned_cols=160  Identities=18%  Similarity=0.240  Sum_probs=128.8

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE-EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE-TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF   89 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   89 (180)
                      +..+||+++|++|||||||++++..+.+ ..+.||.+..+. .+..  ..+.+.+|||||++++..++..+++.+|++++
T Consensus         3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil   82 (189)
T PTZ00369          3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC   82 (189)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence            5679999999999999999999998874 455677765443 2333  45678899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHh--HHHhHhCCCccCCcceEEEEeeccCCCChHH
Q 030289           90 VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVS--EVTDKLGLHSLRQRRWYIQAACATSGQGLYE  167 (180)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  167 (180)
                      |||++++++++.+..|+..+.......+.|+++|+||+|+.+.....  +.. ..    ....+++++++||++|.|+++
T Consensus        83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~-~~----~~~~~~~~~e~Sak~~~gi~~  157 (189)
T PTZ00369         83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQ-EL----AKSFGIPFLETSAKQRVNVDE  157 (189)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHH-HH----HHHhCCEEEEeeCCCCCCHHH
Confidence            99999999999999999888765445688999999999986543221  111 11    122346899999999999999


Q ss_pred             HHHHHHHHhhh
Q 030289          168 GLDWLSSNVSA  178 (180)
Q Consensus       168 ~~~~l~~~~~~  178 (180)
                      +|.++++.+.+
T Consensus       158 ~~~~l~~~l~~  168 (189)
T PTZ00369        158 AFYELVREIRK  168 (189)
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=100.00  E-value=2.4e-33  Score=188.26  Aligned_cols=154  Identities=38%  Similarity=0.682  Sum_probs=133.1

Q ss_pred             EEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChh
Q 030289           19 ILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRE   97 (180)
Q Consensus        19 i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~   97 (180)
                      |+++|++|||||||+++|.++. ...+.||.+.....+...+.++.+||+||+++++..+..+++++|++++|+|++++.
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~   81 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSE   81 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHH
Confidence            7899999999999999999876 456678988877777788999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCcc-CCcceEEEEeeccC------CCChHHHHH
Q 030289           98 RIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSL-RQRRWYIQAACATS------GQGLYEGLD  170 (180)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~------~~~i~~~~~  170 (180)
                      ++.....|+..+....  +++|+++|+||+|+......+++...+..... ++.++.+++|||++      ++||+++|+
T Consensus        82 s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~  159 (164)
T cd04162          82 RLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLS  159 (164)
T ss_pred             HHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHH
Confidence            9999999988886542  68999999999999887777766666554444 55688999999998      999999999


Q ss_pred             HHHH
Q 030289          171 WLSS  174 (180)
Q Consensus       171 ~l~~  174 (180)
                      .++.
T Consensus       160 ~~~~  163 (164)
T cd04162         160 QLIN  163 (164)
T ss_pred             HHhc
Confidence            8864

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=1.4e-34  Score=196.37  Aligned_cols=161  Identities=17%  Similarity=0.212  Sum_probs=125.2

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEE-EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE-TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV   91 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (180)
                      ++||+++|++|||||||++++..+. ...+.||++..+. .+..  ..+.+.+|||+|++.+..+++.+++++|++++||
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf   80 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF   80 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence            4799999999999999999999887 4466788765543 2333  4578999999999999999999999999999999


Q ss_pred             ECCChhhHHHH-HHHHHHHhcccccCCCeEEEEEecCCCCCCCC-H--------hHHHhHhCCCccCCcce-EEEEeecc
Q 030289           92 DSNDRERIGEA-KDELHRMLSEDELREAVLLVFANKQDLPNAMS-V--------SEVTDKLGLHSLRQRRW-YIQAACAT  160 (180)
Q Consensus        92 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~-~--------~~~~~~~~~~~~~~~~~-~~~~~Sa~  160 (180)
                      |++++++++.+ ..|+..+...  .++.|+++|+||+|+.++.. .        ..+..+.+...++..++ +|++|||+
T Consensus        81 dit~~~Sf~~~~~~w~~~i~~~--~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~  158 (178)
T cd04131          81 DISRPETLDSVLKKWRGEIQEF--CPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF  158 (178)
T ss_pred             ECCChhhHHHHHHHHHHHHHHH--CCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence            99999999996 7888877554  25789999999999864210 0        00111222233344565 79999999


Q ss_pred             CCCC-hHHHHHHHHHHhhh
Q 030289          161 SGQG-LYEGLDWLSSNVSA  178 (180)
Q Consensus       161 ~~~~-i~~~~~~l~~~~~~  178 (180)
                      +|+| |+++|..+++...+
T Consensus       159 ~~~~~v~~~F~~~~~~~~~  177 (178)
T cd04131         159 TSEKSVRDIFHVATMACLN  177 (178)
T ss_pred             cCCcCHHHHHHHHHHHHhc
Confidence            9995 99999999996553

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd00879 Sar1 Sar1 subfamily

Probab=100.00  E-value=4.2e-33  Score=191.39  Aligned_cols=164  Identities=38%  Similarity=0.653  Sum_probs=139.6

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEE
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVD   92 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   92 (180)
                      ..+.+||+++|++|||||||++++.++....+.||.+.....+...+..+.+||+||+..+...+..+++++|++++|+|
T Consensus        16 ~~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D   95 (190)
T cd00879          16 YNKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVD   95 (190)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEE
Confidence            36689999999999999999999998887677788888888888889999999999999888889999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCcc-----------CCcceEEEEeeccC
Q 030289           93 SNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSL-----------RQRRWYIQAACATS  161 (180)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~Sa~~  161 (180)
                      +++.+++.....++..+.......+.|+++++||+|+......+++.+.++....           ......+++|||++
T Consensus        96 ~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  175 (190)
T cd00879          96 AADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVK  175 (190)
T ss_pred             CCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecC
Confidence            9999999888888888876555567999999999999876666677666554221           12346799999999


Q ss_pred             CCChHHHHHHHHHHh
Q 030289          162 GQGLYEGLDWLSSNV  176 (180)
Q Consensus       162 ~~~i~~~~~~l~~~~  176 (180)
                      |+|++++|+++.+.+
T Consensus       176 ~~gv~e~~~~l~~~~  190 (190)
T cd00879         176 RQGYGEAFRWLSQYL  190 (190)
T ss_pred             CCChHHHHHHHHhhC
Confidence            999999999998753

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=1.5e-33  Score=189.72  Aligned_cols=157  Identities=18%  Similarity=0.345  Sum_probs=126.3

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCCcc-ccccccceeEE--EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV   90 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (180)
                      .+||+++|++|||||||++++..+++. .+.+|.+..+.  .+..  ..+++.+||+||++++...+..+++++|++++|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            479999999999999999999988844 44457765543  3334  456889999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289           91 VDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG  168 (180)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (180)
                      ||++++++++.+..|+..+.... .++.|+++|+||+|+..+..  .++... +    +...++++++|||++|.|++++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iiiv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~e~Sa~~~~~i~e~  155 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLEAQRDVTYEEAKQ-F----ADENGLLFLECSAKTGENVEDA  155 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCcCHHHHHH-H----HHHcCCEEEEEECCCCCCHHHH
Confidence            99999999999999998875432 35789999999999976443  222221 1    2234568999999999999999


Q ss_pred             HHHHHHHhhh
Q 030289          169 LDWLSSNVSA  178 (180)
Q Consensus       169 ~~~l~~~~~~  178 (180)
                      |..+++.+.+
T Consensus       156 f~~l~~~~~~  165 (166)
T cd04122         156 FLETAKKIYQ  165 (166)
T ss_pred             HHHHHHHHhh
Confidence            9999988765

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=1.3e-33  Score=192.31  Aligned_cols=160  Identities=19%  Similarity=0.375  Sum_probs=128.1

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEE--EEE------------cCeEEEEEEcCCCCCChhhHHh
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVET--VEY------------KNVSFTVWDVGGQDKIRPLWRH   79 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~--~~~------------~~~~~~i~D~~G~~~~~~~~~~   79 (180)
                      ..+||+++|++|||||||++++..+. ...+.+|++..+..  +..            ..+.+.+||+||++++...+..
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   82 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA   82 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence            46899999999999999999999887 44556777755432  322            2478999999999999999999


Q ss_pred             hccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEe
Q 030289           80 YFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAA  157 (180)
Q Consensus        80 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  157 (180)
                      +++++|++++|||+++++++..+..|+..+......++.|+++|+||+|+.+...  .++. ..+    +...+++++++
T Consensus        83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~-~~~----~~~~~~~~~e~  157 (180)
T cd04127          83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQA-KAL----ADKYGIPYFET  157 (180)
T ss_pred             HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHH-HHH----HHHcCCeEEEE
Confidence            9999999999999999999999999998886654446789999999999975432  2222 111    12234679999


Q ss_pred             eccCCCChHHHHHHHHHHhhhc
Q 030289          158 CATSGQGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       158 Sa~~~~~i~~~~~~l~~~~~~~  179 (180)
                      ||++|.|++++|+++.+.+.++
T Consensus       158 Sak~~~~v~~l~~~l~~~~~~~  179 (180)
T cd04127         158 SAATGTNVEKAVERLLDLVMKR  179 (180)
T ss_pred             eCCCCCCHHHHHHHHHHHHHhh
Confidence            9999999999999999887653

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=9.9e-35  Score=189.02  Aligned_cols=163  Identities=17%  Similarity=0.285  Sum_probs=133.1

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEEEE--E--cCeEEEEEEcCCCCCChhhHHhhccccCEE
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVE--Y--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGL   87 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~~~--~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   87 (180)
                      ++.-+||++.|++|+|||||+|++.+++ ...+.+|++..+.+..  +  .-+.++||||+|+++|+++.-.+|+++|++
T Consensus         6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC   85 (210)
T KOG0394|consen    6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC   85 (210)
T ss_pred             cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence            4566999999999999999999999988 5566789986665433  3  446789999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhcccc---cCCCeEEEEEecCCCCCCC--CH-hHHHhHhCCCccCCcceEEEEeeccC
Q 030289           88 IFVVDSNDRERIGEAKDELHRMLSEDE---LREAVLLVFANKQDLPNAM--SV-SEVTDKLGLHSLRQRRWYIQAACATS  161 (180)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~iiiv~nK~D~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~  161 (180)
                      ++|||++++++++.+..|..+++....   ....|+|+++||.|+....  .+ ....+.+..   .+.++|||++||++
T Consensus        86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~---s~gnipyfEtSAK~  162 (210)
T KOG0394|consen   86 VLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCK---SKGNIPYFETSAKE  162 (210)
T ss_pred             EEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHH---hcCCceeEEecccc
Confidence            999999999999999999999987653   2457999999999986632  11 111112111   34578999999999


Q ss_pred             CCChHHHHHHHHHHhhh
Q 030289          162 GQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       162 ~~~i~~~~~~l~~~~~~  178 (180)
                      ..||+++|..+.+.+.+
T Consensus       163 ~~NV~~AFe~ia~~aL~  179 (210)
T KOG0394|consen  163 ATNVDEAFEEIARRALA  179 (210)
T ss_pred             cccHHHHHHHHHHHHHh
Confidence            99999999999988764

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=100.00  E-value=4.7e-33  Score=186.15  Aligned_cols=157  Identities=48%  Similarity=0.916  Sum_probs=132.1

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEE-cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCCh
Q 030289           18 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDR   96 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~   96 (180)
                      +|+++|++|||||||++++..+.+....||.+.....+.. ....+.+||+||+..+...+..++.++|++++|+|++++
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~   80 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDE   80 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcH
Confidence            5899999999999999999998876778888877766665 457899999999999998999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCcc-CCcceEEEEeeccCCCChHHHHHHHHH
Q 030289           97 ERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSL-RQRRWYIQAACATSGQGLYEGLDWLSS  174 (180)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~~~~~l~~  174 (180)
                      .++.....|+..++......+.|+++|+||+|+......+++...+..... ...++++++|||++|+|++++|++|.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~  159 (160)
T cd04156          81 ARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS  159 (160)
T ss_pred             HHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence            999999988888876544468999999999999765555666655544333 335678999999999999999999865

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=8.2e-34  Score=192.34  Aligned_cols=158  Identities=18%  Similarity=0.203  Sum_probs=122.8

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE-EEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEEEEEEE
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE-TVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVD   92 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   92 (180)
                      +||+++|++|||||||++++..+.+ ..+.||++..+. .+..++  +.+.+|||+|++++...+..+++++|++++|||
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d   81 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS   81 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence            6999999999999999999998885 567788876554 444444  788999999999999999999999999999999


Q ss_pred             CCChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHH---------hHhCCCccCCcc-eEEEEeeccC
Q 030289           93 SNDRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVT---------DKLGLHSLRQRR-WYIQAACATS  161 (180)
Q Consensus        93 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~Sa~~  161 (180)
                      ++++++++.+. .|+..+...  .+++|+++|+||+|+.+.....+..         .+.+...++..+ +.|++|||++
T Consensus        82 ~~~~~s~~~~~~~w~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t  159 (175)
T cd01874          82 VVSPSSFENVKEKWVPEITHH--CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT  159 (175)
T ss_pred             CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence            99999999997 477666443  2579999999999986542211100         001111122333 6899999999


Q ss_pred             CCChHHHHHHHHHHh
Q 030289          162 GQGLYEGLDWLSSNV  176 (180)
Q Consensus       162 ~~~i~~~~~~l~~~~  176 (180)
                      |.|++++|+.++++.
T Consensus       160 g~~v~~~f~~~~~~~  174 (175)
T cd01874         160 QKGLKNVFDEAILAA  174 (175)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998854

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.9e-34  Score=181.16  Aligned_cols=169  Identities=18%  Similarity=0.371  Sum_probs=140.3

Q ss_pred             HHHhhhcccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEEEEE----cCeEEEEEEcCCCCCChhhHHhh
Q 030289            6 SRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWRHY   80 (180)
Q Consensus         6 ~~~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~   80 (180)
                      ++.++++ ...+|++++|+..+|||||+.+.++.. ...+..|+|+.+....+    +.+++++|||.|+++|+.++-.+
T Consensus        12 ~s~dqnF-DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTay   90 (193)
T KOG0093|consen   12 DSIDQNF-DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAY   90 (193)
T ss_pred             ccccccc-cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHH
Confidence            3445666 456799999999999999999999888 55677898877654433    56899999999999999999999


Q ss_pred             ccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeecc
Q 030289           81 FQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACAT  160 (180)
Q Consensus        81 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  160 (180)
                      +++++++|++||++|.+++..+..|..++... ...+.|+|+|+||||+.+++..   ..+.+...+.+.+..||++||+
T Consensus        91 yRgamgfiLmyDitNeeSf~svqdw~tqIkty-sw~naqvilvgnKCDmd~eRvi---s~e~g~~l~~~LGfefFEtSaK  166 (193)
T KOG0093|consen   91 YRGAMGFILMYDITNEESFNSVQDWITQIKTY-SWDNAQVILVGNKCDMDSERVI---SHERGRQLADQLGFEFFETSAK  166 (193)
T ss_pred             hhccceEEEEEecCCHHHHHHHHHHHHHheee-eccCceEEEEecccCCccceee---eHHHHHHHHHHhChHHhhhccc
Confidence            99999999999999999999999999998654 4568999999999999876532   2233334445566689999999


Q ss_pred             CCCChHHHHHHHHHHhhhc
Q 030289          161 SGQGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       161 ~~~~i~~~~~~l~~~~~~~  179 (180)
                      .+.|++.+|+.++..+.++
T Consensus       167 ~NinVk~~Fe~lv~~Ic~k  185 (193)
T KOG0093|consen  167 ENINVKQVFERLVDIICDK  185 (193)
T ss_pred             ccccHHHHHHHHHHHHHHH
Confidence            9999999999999988654

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=1.9e-33  Score=196.66  Aligned_cols=161  Identities=20%  Similarity=0.326  Sum_probs=132.0

Q ss_pred             hhcccCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEEEEEE----cCeEEEEEEcCCCCCChhhHHhhcccc
Q 030289           10 MLFARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWRHYFQNT   84 (180)
Q Consensus        10 ~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~   84 (180)
                      +...+..+||+++|++|||||||+++++.+.+ ..+.+|++..+....+    ..+.+.+|||+|++.+..++..+++++
T Consensus         7 ~~~~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~   86 (219)
T PLN03071          7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG   86 (219)
T ss_pred             CCcCCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccc
Confidence            33448889999999999999999999988874 4567888876654433    457999999999999999999999999


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC-CHhHHHhHhCCCccCCcceEEEEeeccCCC
Q 030289           85 HGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM-SVSEVTDKLGLHSLRQRRWYIQAACATSGQ  163 (180)
Q Consensus        85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  163 (180)
                      |++|+|||++++++++.+..|+..+...  ..+.|+++|+||+|+.... ..+++      ......+++|++|||++|.
T Consensus        87 ~~~ilvfD~~~~~s~~~i~~w~~~i~~~--~~~~piilvgNK~Dl~~~~v~~~~~------~~~~~~~~~~~e~SAk~~~  158 (219)
T PLN03071         87 QCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV------TFHRKKNLQYYEISAKSNY  158 (219)
T ss_pred             cEEEEEEeCCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEEchhhhhccCCHHHH------HHHHhcCCEEEEcCCCCCC
Confidence            9999999999999999999999888654  3579999999999986432 12222      1123345789999999999


Q ss_pred             ChHHHHHHHHHHhhh
Q 030289          164 GLYEGLDWLSSNVSA  178 (180)
Q Consensus       164 ~i~~~~~~l~~~~~~  178 (180)
                      |++++|.++++.+.+
T Consensus       159 ~i~~~f~~l~~~~~~  173 (219)
T PLN03071        159 NFEKPFLYLARKLAG  173 (219)
T ss_pred             CHHHHHHHHHHHHHc
Confidence            999999999988764

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=5.5e-33  Score=186.87  Aligned_cols=156  Identities=20%  Similarity=0.351  Sum_probs=127.7

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEEEEE----cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV   91 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (180)
                      +||+++|++|||||||++++..+. ...+.+|.+.....+..    ..+.+.+|||+|++.+...+..+++.+|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            699999999999999999999777 44567888776655444    4578999999999999888899999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHH
Q 030289           92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDW  171 (180)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  171 (180)
                      |++++++++.+..|+..+....  .++|+++|+||+|+.......+.. .    ......++++++||++|.|++++|++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~~~~~~~~~~-~----~~~~~~~~~~e~Sa~~~~~v~~~f~~  153 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIKDRKVKAKQI-T----FHRKKNLQYYEISAKSNYNFEKPFLW  153 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhcccccCCHHHH-H----HHHHcCCEEEEEeCCCCCChHHHHHH
Confidence            9999999999999999886653  389999999999997433222211 1    12234568999999999999999999


Q ss_pred             HHHHhhhc
Q 030289          172 LSSNVSAK  179 (180)
Q Consensus       172 l~~~~~~~  179 (180)
                      +++.+.+.
T Consensus       154 l~~~~~~~  161 (166)
T cd00877         154 LARKLLGN  161 (166)
T ss_pred             HHHHHHhc
Confidence            99988754

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=1.8e-33  Score=188.90  Aligned_cols=157  Identities=19%  Similarity=0.311  Sum_probs=125.7

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCCcc-ccccccceeE-EEEEEc--CeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV-ETVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV   91 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (180)
                      ++||+++|++|||||||++++..+.+. .+.+|++..+ ..+...  .+.+.+|||||++++...+..+++++|++++||
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY   80 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence            479999999999999999999977743 4556666333 234443  567789999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCH--hHHHhHhCCCccCCcceEEEEeeccCCCChHHHH
Q 030289           92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSV--SEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGL  169 (180)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  169 (180)
                      |++++.+++.+.+|+..+.......+.|+++|+||+|+.+....  ++. ..+    .+..+++++++||++|.|++++|
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~----~~~~~~~~~~~Sa~~~~~v~~~~  155 (164)
T cd04175          81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQG-QNL----ARQWGCAFLETSAKAKINVNEIF  155 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHH-HHH----HHHhCCEEEEeeCCCCCCHHHHH
Confidence            99999999999999998876555578999999999999764322  211 111    12234689999999999999999


Q ss_pred             HHHHHHhh
Q 030289          170 DWLSSNVS  177 (180)
Q Consensus       170 ~~l~~~~~  177 (180)
                      .++.+.+.
T Consensus       156 ~~l~~~l~  163 (164)
T cd04175         156 YDLVRQIN  163 (164)
T ss_pred             HHHHHHhh
Confidence            99998764

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.1e-34  Score=179.40  Aligned_cols=162  Identities=20%  Similarity=0.343  Sum_probs=135.2

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCcc-ccccccceeEE--EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLI   88 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   88 (180)
                      ..-||++++|+.|+|||+|+++|..+++. ....|+++.+.  .+++  +.++++||||+|++++++..+.||+++.+++
T Consensus         7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAl   86 (214)
T KOG0086|consen    7 DYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL   86 (214)
T ss_pred             hhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceE
Confidence            34589999999999999999999988844 34468886654  3343  6789999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289           89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG  168 (180)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (180)
                      +|||++++++++.+..|+.+.... ..+.+.+++++||.|+.+++++.-.   ....++...++.++++|+++|+|++|+
T Consensus        87 LVYD~TsrdsfnaLtnWL~DaR~l-As~nIvviL~GnKkDL~~~R~Vtfl---EAs~FaqEnel~flETSa~TGeNVEEa  162 (214)
T KOG0086|consen   87 LVYDITSRDSFNALTNWLTDARTL-ASPNIVVILCGNKKDLDPEREVTFL---EASRFAQENELMFLETSALTGENVEEA  162 (214)
T ss_pred             EEEeccchhhHHHHHHHHHHHHhh-CCCcEEEEEeCChhhcChhhhhhHH---HHHhhhcccceeeeeecccccccHHHH
Confidence            999999999999999999998544 3478899999999999987654332   223555667778999999999999999


Q ss_pred             HHHHHHHhhhc
Q 030289          169 LDWLSSNVSAK  179 (180)
Q Consensus       169 ~~~l~~~~~~~  179 (180)
                      |-...+.+..+
T Consensus       163 Fl~c~~tIl~k  173 (214)
T KOG0086|consen  163 FLKCARTILNK  173 (214)
T ss_pred             HHHHHHHHHHH
Confidence            99988887653

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=6.3e-34  Score=199.24  Aligned_cols=162  Identities=18%  Similarity=0.213  Sum_probs=127.2

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEE-EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE-TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV   90 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (180)
                      ..+||+++|++|||||||+++|..+. ..++.||++..+. .+..  ..+.+.+|||+|++.|..+++.+++++|++++|
T Consensus        12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlV   91 (232)
T cd04174          12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC   91 (232)
T ss_pred             eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEE
Confidence            47899999999999999999999887 4466788875553 2333  457899999999999999999999999999999


Q ss_pred             EECCChhhHHHH-HHHHHHHhcccccCCCeEEEEEecCCCCCCCC---------HhHHHhHhCCCccCCcce-EEEEeec
Q 030289           91 VDSNDRERIGEA-KDELHRMLSEDELREAVLLVFANKQDLPNAMS---------VSEVTDKLGLHSLRQRRW-YIQAACA  159 (180)
Q Consensus        91 ~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~Sa  159 (180)
                      ||++++++++.+ ..|+..+...  .++.|+++|+||+|+.+...         ...+....+...++..++ .|++|||
T Consensus        92 yDit~~~Sf~~~~~~w~~~i~~~--~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSA  169 (232)
T cd04174          92 FDISRPETVDSALKKWKAEIMDY--CPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSA  169 (232)
T ss_pred             EECCChHHHHHHHHHHHHHHHHh--CCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccC
Confidence            999999999984 7888887654  25789999999999864210         001111222333445566 6999999


Q ss_pred             cCCC-ChHHHHHHHHHHhhh
Q 030289          160 TSGQ-GLYEGLDWLSSNVSA  178 (180)
Q Consensus       160 ~~~~-~i~~~~~~l~~~~~~  178 (180)
                      ++|. ||+++|..++..+.+
T Consensus       170 ktg~~~V~e~F~~~~~~~~~  189 (232)
T cd04174         170 FTSEKSIHSIFRSASLLCLN  189 (232)
T ss_pred             CcCCcCHHHHHHHHHHHHHH
Confidence            9998 899999999988755

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=2.2e-33  Score=188.26  Aligned_cols=157  Identities=19%  Similarity=0.298  Sum_probs=123.8

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCCc-cccccccc-eeEEEEEEc--CeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIG-FNVETVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV   91 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~-~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (180)
                      .+||+++|++|||||||++++..+.+ ..+.||.+ .....+..+  .+.+.+|||||++++...+..+++++|++++||
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (163)
T cd04136           1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence            47999999999999999999998874 34556665 223344444  467889999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhH-HHhHhCCCccCCcceEEEEeeccCCCChHHHHH
Q 030289           92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSE-VTDKLGLHSLRQRRWYIQAACATSGQGLYEGLD  170 (180)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  170 (180)
                      |++++++++.+..|+..+.......+.|+++|+||+|+.+...... ....+.    +..+.+++++||++|.|++++|+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~l~~  156 (163)
T cd04136          81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALA----RQWGCPFYETSAKSKINVDEVFA  156 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHH----HHcCCeEEEecCCCCCCHHHHHH
Confidence            9999999999999988887654456799999999999865332211 111111    12236899999999999999999


Q ss_pred             HHHHHh
Q 030289          171 WLSSNV  176 (180)
Q Consensus       171 ~l~~~~  176 (180)
                      ++.+.+
T Consensus       157 ~l~~~~  162 (163)
T cd04136         157 DLVRQI  162 (163)
T ss_pred             HHHHhc
Confidence            998765

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=3.4e-33  Score=188.05  Aligned_cols=156  Identities=24%  Similarity=0.401  Sum_probs=125.8

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEE--EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE--TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV   91 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (180)
                      +||+++|++|||||||+++|++++ ...+.+|++..+.  .+..  ..+.+.+|||||++.+...+..+++++|++++||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            589999999999999999999988 4566778876543  3333  4578999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhcccc----cCCCeEEEEEecCCCCCCC--CHhHHHhHhCCCccCCcceEEEEeeccCCCCh
Q 030289           92 DSNDRERIGEAKDELHRMLSEDE----LREAVLLVFANKQDLPNAM--SVSEVTDKLGLHSLRQRRWYIQAACATSGQGL  165 (180)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  165 (180)
                      |++++++++.+..|+..+.....    ....|+++|+||+|+.++.  ..++....     ....+++++++||++|.|+
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi  155 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLW-----AESKGFKYFETSACTGEGV  155 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHH-----HHHcCCeEEEEECCCCCCH
Confidence            99999999999999988865432    2568999999999997422  22222211     1223467999999999999


Q ss_pred             HHHHHHHHHHhh
Q 030289          166 YEGLDWLSSNVS  177 (180)
Q Consensus       166 ~~~~~~l~~~~~  177 (180)
                      +++|+++.+.+.
T Consensus       156 ~~l~~~l~~~l~  167 (168)
T cd04119         156 NEMFQTLFSSIV  167 (168)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998875

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=1.3e-32  Score=190.42  Aligned_cols=157  Identities=23%  Similarity=0.338  Sum_probs=125.6

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeE--EEEEEc---CeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV--ETVEYK---NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV   90 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~--~~~~~~---~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (180)
                      +||+++|++|||||||+++|.++. ...+.+|++..+  ..+...   .+.+.+|||||++.+..++..+++++|++++|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            689999999999999999999887 445678887554  334433   57899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhccc---ccCCCeEEEEEecCCCCC--CCCHhHHHhHhCCCccCCcc-eEEEEeeccCCCC
Q 030289           91 VDSNDRERIGEAKDELHRMLSED---ELREAVLLVFANKQDLPN--AMSVSEVTDKLGLHSLRQRR-WYIQAACATSGQG  164 (180)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~iiiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~  164 (180)
                      ||++++++++.+..|+..+....   ...++|+++|+||+|+.+  ....++..+..     +..+ .+++++||++|.|
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~e~Sak~~~~  155 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFC-----KENGFIGWFETSAKEGIN  155 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHH-----HHcCCceEEEEeCCCCCC
Confidence            99999999999999987765422   235789999999999973  23333332221     1223 4799999999999


Q ss_pred             hHHHHHHHHHHhhh
Q 030289          165 LYEGLDWLSSNVSA  178 (180)
Q Consensus       165 i~~~~~~l~~~~~~  178 (180)
                      ++++|.++.+.+.+
T Consensus       156 v~e~f~~l~~~l~~  169 (201)
T cd04107         156 IEEAMRFLVKNILA  169 (201)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998765

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04155 Arl3 Arl3 subfamily

Probab=100.00  E-value=2.4e-32  Score=184.96  Aligned_cols=161  Identities=50%  Similarity=0.873  Sum_probs=139.5

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEEC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDS   93 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   93 (180)
                      .+.++|+++|++|||||||++++.+.....+.+|.++....+...+..+.+||+||+..+...+..+++++|++++|+|+
T Consensus        12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~   91 (173)
T cd04155          12 SEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDS   91 (173)
T ss_pred             CCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeC
Confidence            44899999999999999999999988766677888888888888899999999999988888888999999999999999


Q ss_pred             CChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHH
Q 030289           94 NDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLS  173 (180)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  173 (180)
                      ++..++.....++..+.......++|+++++||+|+.+....+++.+.++........++++++||++|+|++++|++|.
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  171 (173)
T cd04155          92 ADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVC  171 (173)
T ss_pred             CCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHh
Confidence            99888888888887776654446799999999999987666777777777665556667889999999999999999997


Q ss_pred             H
Q 030289          174 S  174 (180)
Q Consensus       174 ~  174 (180)
                      +
T Consensus       172 ~  172 (173)
T cd04155         172 K  172 (173)
T ss_pred             c
Confidence            6

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=6.8e-33  Score=186.35  Aligned_cols=157  Identities=20%  Similarity=0.374  Sum_probs=125.9

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE--EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE--TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV   91 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (180)
                      +||+++|++|||||||+++|.++++ ..+.+|.+..+.  ++..  ..+.+.+||+||++++...+..+++++|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            7999999999999999999998884 456677775443  3333  3478999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChHHHH
Q 030289           92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGL  169 (180)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  169 (180)
                      |++++++++.+..|+..+... .....|+++|+||+|+.+...  .++..+.     ....+++++++||++|.|++++|
T Consensus        82 d~~~~~s~~~~~~~~~~i~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gv~~l~  155 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKTY-SWDNAQVILVGNKCDMEDERVVSSERGRQL-----ADQLGFEFFEASAKENINVKQVF  155 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh-CCCCCCEEEEEECcccCcccccCHHHHHHH-----HHHcCCEEEEEECCCCCCHHHHH
Confidence            999999999999999887543 234789999999999976432  2222111     12234579999999999999999


Q ss_pred             HHHHHHhhhc
Q 030289          170 DWLSSNVSAK  179 (180)
Q Consensus       170 ~~l~~~~~~~  179 (180)
                      +++.+.+.++
T Consensus       156 ~~l~~~~~~~  165 (165)
T cd01865         156 ERLVDIICDK  165 (165)
T ss_pred             HHHHHHHHhC
Confidence            9999887653

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=7.2e-33  Score=188.66  Aligned_cols=159  Identities=18%  Similarity=0.305  Sum_probs=125.2

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCCcc-ccccccceeE--EEEEEc--CeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV   91 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (180)
                      +||+++|++|||||||++++..+.+. .+.||++..+  ..+..+  .+.+.+||++|++++..++..+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            58999999999999999999988844 5778988665  345554  478999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC---HhHHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289           92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS---VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG  168 (180)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (180)
                      |++++++++.+..|+..+.... ....| ++|+||+|+..+..   ...+. ......++..++++++|||++|.|++++
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~~-~~~~p-ilVgnK~Dl~~~~~~~~~~~~~-~~~~~~a~~~~~~~~e~SAk~g~~v~~l  157 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGFN-KTAIP-ILVGTKYDLFADLPPEEQEEIT-KQARKYAKAMKAPLIFCSTSHSINVQKI  157 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhC-CCCCE-EEEEEchhccccccchhhhhhH-HHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            9999999999999999886542 23567 67899999864211   11111 1111222334578999999999999999


Q ss_pred             HHHHHHHhhh
Q 030289          169 LDWLSSNVSA  178 (180)
Q Consensus       169 ~~~l~~~~~~  178 (180)
                      |.++.+.+.+
T Consensus       158 f~~l~~~l~~  167 (182)
T cd04128         158 FKIVLAKAFD  167 (182)
T ss_pred             HHHHHHHHHh
Confidence            9999988765

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=9.9e-33  Score=192.05  Aligned_cols=159  Identities=23%  Similarity=0.466  Sum_probs=127.8

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE--EEEE---cCeEEEEEEcCCCCCChhhHHhhccccCEEEE
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE--TVEY---KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF   89 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~--~~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   89 (180)
                      .+||+++|++|||||||+++|.++.+ ..+.+|++.++.  .+..   ..+.+.+|||||++.+...+..+++++|++++
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            58999999999999999999998874 345577775543  3433   24689999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChHH
Q 030289           90 VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYE  167 (180)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  167 (180)
                      |||++++++++.+..|+..+.........|+++|+||+|+.+...  .++.. .+    .+..+++++++||++|.|+++
T Consensus        82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~-~~----~~~~~~~~~e~Sak~g~~v~e  156 (211)
T cd04111          82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAE-KL----AKDLGMKYIETSARTGDNVEE  156 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHH-HH----HHHhCCEEEEEeCCCCCCHHH
Confidence            999999999999999999887654445688999999999876332  22221 11    223447899999999999999


Q ss_pred             HHHHHHHHhhhc
Q 030289          168 GLDWLSSNVSAK  179 (180)
Q Consensus       168 ~~~~l~~~~~~~  179 (180)
                      +|+++++.+.++
T Consensus       157 ~f~~l~~~~~~~  168 (211)
T cd04111         157 AFELLTQEIYER  168 (211)
T ss_pred             HHHHHHHHHHHH
Confidence            999999987653

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=1.2e-32  Score=185.56  Aligned_cols=159  Identities=19%  Similarity=0.363  Sum_probs=128.0

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeE--EEEEEc--CeEEEEEEcCCCCCChhhHHhhccccCEEEE
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV--ETVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF   89 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   89 (180)
                      ..+||+++|++|+|||||++++.++. ...+.+|.+..+  ..+...  .+.+.+||+||++.+...+..+++++|++++
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~   81 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence            46899999999999999999999887 444567777544  344443  4688999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC--CHhHHHhHhCCCccCCcceEEEEeeccCCCChHH
Q 030289           90 VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM--SVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYE  167 (180)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  167 (180)
                      |||++++++++.+..|+..+... ...+.|+++|+||+|+.+..  ..++....     +...+.+++++||++|.|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~~  155 (167)
T cd01867          82 VYDITDEKSFENIRNWMRNIEEH-ASEDVERMLVGNKCDMEEKRVVSKEEGEAL-----ADEYGIKFLETSAKANINVEE  155 (167)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHH-----HHHcCCEEEEEeCCCCCCHHH
Confidence            99999999999999999888654 23578999999999997533  22222221     122345899999999999999


Q ss_pred             HHHHHHHHhhhc
Q 030289          168 GLDWLSSNVSAK  179 (180)
Q Consensus       168 ~~~~l~~~~~~~  179 (180)
                      +|+++.+.+..+
T Consensus       156 ~~~~i~~~~~~~  167 (167)
T cd01867         156 AFFTLAKDIKKK  167 (167)
T ss_pred             HHHHHHHHHHhC
Confidence            999999998653

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=100.00  E-value=2.2e-32  Score=184.16  Aligned_cols=157  Identities=40%  Similarity=0.751  Sum_probs=130.9

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCC-------ccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289           18 RILMVGLDAAGKTTILYKLKLGE-------IVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV   90 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~-------~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (180)
                      ||+++|++|+|||||+++|....       ...+.+|++.....+..++..+.+|||||+..+...+..++.++|++++|
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v   80 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV   80 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence            68999999999999999997532       23456788888888888999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCc--cCCcceEEEEeeccCCCChHHH
Q 030289           91 VDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHS--LRQRRWYIQAACATSGQGLYEG  168 (180)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~i~~~  168 (180)
                      +|+++++++.....|+..+.......+.|+++++||+|+.+....++....+....  .....++++++||++|.|++++
T Consensus        81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~  160 (167)
T cd04160          81 IDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREG  160 (167)
T ss_pred             EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHH
Confidence            99999888888888888887765556899999999999987665555554433321  2334678999999999999999


Q ss_pred             HHHHHH
Q 030289          169 LDWLSS  174 (180)
Q Consensus       169 ~~~l~~  174 (180)
                      +++|.+
T Consensus       161 ~~~l~~  166 (167)
T cd04160         161 IEWLVE  166 (167)
T ss_pred             HHHHhc
Confidence            999875

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=6.2e-33  Score=187.24  Aligned_cols=158  Identities=21%  Similarity=0.325  Sum_probs=125.8

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE--EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEE
Q 030289           18 RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE--TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVD   92 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   92 (180)
                      ||+++|++|||||||++++..+.+ .++.||++..+.  .+..  ..+.+.+|||||++++...+..+++++|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            799999999999999999999874 466788876653  3333  34679999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCH---hHHHhHhCCCccCCcceEEEEeeccCCCChHHHH
Q 030289           93 SNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSV---SEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGL  169 (180)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  169 (180)
                      ++++++++....|+..+.......+.|+++|+||+|+.+....   ++....+    ....+.+++++||++|.|++++|
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~e~Sa~~g~~v~~lf  157 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKL----AAEMQAEYWSVSALSGENVREFF  157 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHH----HHHcCCeEEEEECCCCCCHHHHH
Confidence            9999999999999998865543345789999999998653221   1111111    12234579999999999999999


Q ss_pred             HHHHHHhhhc
Q 030289          170 DWLSSNVSAK  179 (180)
Q Consensus       170 ~~l~~~~~~~  179 (180)
                      ..+++.+.+-
T Consensus       158 ~~l~~~~~~~  167 (170)
T cd04108         158 FRVAALTFEL  167 (170)
T ss_pred             HHHHHHHHHc
Confidence            9999887653

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=100.00  E-value=1e-32  Score=185.21  Aligned_cols=157  Identities=19%  Similarity=0.299  Sum_probs=123.6

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCCcc-cccccccee-EEEEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEE
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN-VETVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVD   92 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~-~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   92 (180)
                      +||+++|++|||||||++++.++.+. .+.+|.... ...+..  ..+.+.+|||||++++...+..+++++|++++|||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence            58999999999999999999987743 344555422 223333  44788999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHH
Q 030289           93 SNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLD  170 (180)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  170 (180)
                      ++++++++.+..|+..+.+.....+.|+++|+||+|+.....  .++....     ....+.+++++||++|.|++++|+
T Consensus        81 ~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~l~~  155 (164)
T smart00173       81 ITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKEL-----ARQWGCPFLETSAKERVNVDEAFY  155 (164)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHH-----HHHcCCEEEEeecCCCCCHHHHHH
Confidence            999999999999988876655455789999999999876432  2222111     122346899999999999999999


Q ss_pred             HHHHHhhh
Q 030289          171 WLSSNVSA  178 (180)
Q Consensus       171 ~l~~~~~~  178 (180)
                      ++.+.+..
T Consensus       156 ~l~~~~~~  163 (164)
T smart00173      156 DLVREIRK  163 (164)
T ss_pred             HHHHHHhh
Confidence            99988754

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=1.9e-32  Score=183.40  Aligned_cols=156  Identities=19%  Similarity=0.273  Sum_probs=123.6

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeE-EEEEEc--CeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV-ETVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV   91 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (180)
                      .+||+++|++|||||||+++|+++.+ ..+.+|.+..+ ..+..+  .+.+.+||+||++++..++..+++++|++++||
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~   80 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF   80 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence            47999999999999999999998873 45556666433 233333  456889999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC-CHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHH
Q 030289           92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM-SVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLD  170 (180)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  170 (180)
                      |++++.+++.+..|+..+.......+.|+++|+||+|+.+.. ...+....     ....+.+++++||++|.|++++|+
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~l~~  155 (162)
T cd04138          81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDL-----AKSYGIPYIETSAKTRQGVEEAFY  155 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHH-----HHHhCCeEEEecCCCCCCHHHHHH
Confidence            999999999999888888765445688999999999987532 22222111     122345899999999999999999


Q ss_pred             HHHHHh
Q 030289          171 WLSSNV  176 (180)
Q Consensus       171 ~l~~~~  176 (180)
                      ++++.+
T Consensus       156 ~l~~~~  161 (162)
T cd04138         156 TLVREI  161 (162)
T ss_pred             HHHHHh
Confidence            998765

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=7.9e-33  Score=185.64  Aligned_cols=157  Identities=18%  Similarity=0.279  Sum_probs=123.7

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCCc-cccccccc-eeEEEEEEc--CeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIG-FNVETVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV   91 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~-~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (180)
                      ++||+++|.+|+|||||++++..+.+ ..+.+|.+ .....+...  ...+.+|||||++++..++..+++++|++++||
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~   80 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence            47999999999999999999998884 34456654 333344443  457889999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhH-HHhHhCCCccCCcceEEEEeeccCCCChHHHHH
Q 030289           92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSE-VTDKLGLHSLRQRRWYIQAACATSGQGLYEGLD  170 (180)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  170 (180)
                      |++++++++.+..|+..+.......++|+++|+||+|+.+...... ....+    ....+.+++++||+++.|++++|.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~~v~~l~~  156 (163)
T cd04176          81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRAL----AEEWGCPFMETSAKSKTMVNELFA  156 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHH----HHHhCCEEEEecCCCCCCHHHHHH
Confidence            9999999999999988887654446899999999999865332211 11111    122345899999999999999999


Q ss_pred             HHHHHh
Q 030289          171 WLSSNV  176 (180)
Q Consensus       171 ~l~~~~  176 (180)
                      ++++.+
T Consensus       157 ~l~~~l  162 (163)
T cd04176         157 EIVRQM  162 (163)
T ss_pred             HHHHhc
Confidence            998765

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.7e-33  Score=187.24  Aligned_cols=161  Identities=20%  Similarity=0.375  Sum_probs=136.0

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEEEEE----cCeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLI   88 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   88 (180)
                      ..-|||+++|++++|||-|+.||..++ ..+..+|+++.+.+...    +.++.+||||+||++|+..+..||+++.+++
T Consensus        12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAl   91 (222)
T KOG0087|consen   12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL   91 (222)
T ss_pred             ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeE
Confidence            557899999999999999999999999 55667899977765333    6688999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289           89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG  168 (180)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (180)
                      +|||++...+++.+..|+.++..+.. +++++++|+||+||...+.+   ..+.+..++...+..|+++||.+..|++++
T Consensus        92 lVYDITr~~Tfenv~rWL~ELRdhad-~nivimLvGNK~DL~~lraV---~te~~k~~Ae~~~l~f~EtSAl~~tNVe~a  167 (222)
T KOG0087|consen   92 LVYDITRRQTFENVERWLKELRDHAD-SNIVIMLVGNKSDLNHLRAV---PTEDGKAFAEKEGLFFLETSALDATNVEKA  167 (222)
T ss_pred             EEEechhHHHHHHHHHHHHHHHhcCC-CCeEEEEeecchhhhhcccc---chhhhHhHHHhcCceEEEecccccccHHHH
Confidence            99999999999999999999987753 68999999999999773322   222222334445668999999999999999


Q ss_pred             HHHHHHHhhh
Q 030289          169 LDWLSSNVSA  178 (180)
Q Consensus       169 ~~~l~~~~~~  178 (180)
                      |..++..+.+
T Consensus       168 F~~~l~~I~~  177 (222)
T KOG0087|consen  168 FERVLTEIYK  177 (222)
T ss_pred             HHHHHHHHHH
Confidence            9999988765

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=1.6e-32  Score=183.75  Aligned_cols=154  Identities=21%  Similarity=0.384  Sum_probs=123.5

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE--EEEEc--CeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE--TVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV   91 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (180)
                      +||+++|++|+|||||++++..+.+ ..+.+|++..+.  .+...  .+.+.+||++|++++...+..+++++|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            5899999999999999999998884 445778876543  44444  467899999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHh-HHHhHhCCCccCCcceEEEEeeccCCCChHHHHH
Q 030289           92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVS-EVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLD  170 (180)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  170 (180)
                      |++++++++.+..|+..+.... ..+.|+++|+||+|+....... +....+    ++..+.++++|||++|.|++++|.
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~~~~~~~----~~~~~~~~~e~Sa~~~~~v~~~f~  155 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEYA-PEGVQKILIGNKADEEQKRQVGDEQGNKL----AKEYGMDFFETSACTNSNIKESFT  155 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCCCHHHHHHH----HHHcCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999998876442 3478999999999986544321 111121    122345799999999999999999


Q ss_pred             HHHHH
Q 030289          171 WLSSN  175 (180)
Q Consensus       171 ~l~~~  175 (180)
                      +|.+.
T Consensus       156 ~l~~~  160 (161)
T cd04117         156 RLTEL  160 (161)
T ss_pred             HHHhh
Confidence            99875

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=1.8e-32  Score=184.39  Aligned_cols=157  Identities=22%  Similarity=0.402  Sum_probs=125.6

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeE--EEEEEc--CeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV--ETVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV   90 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (180)
                      .+||+++|++|||||||++++.++.+ ..+.+|.+..+  ..+...  .+.+.+||+||++++...+..+++++|++++|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            47999999999999999999998773 45566766443  344443  46789999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCH--hHHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289           91 VDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSV--SEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG  168 (180)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (180)
                      ||+++++++..+..|+..+.... ..+.|+++|+||+|+......  ++....     ....+++++++||++|.|++++
T Consensus        82 ~d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~~~  155 (166)
T cd01869          82 YDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQEF-----ADELGIPFLETSAKNATNVEQA  155 (166)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHHHH-----HHHcCCeEEEEECCCCcCHHHH
Confidence            99999999999999998875432 357899999999998654322  222211     1223568999999999999999


Q ss_pred             HHHHHHHhhh
Q 030289          169 LDWLSSNVSA  178 (180)
Q Consensus       169 ~~~l~~~~~~  178 (180)
                      |.++.+.+.+
T Consensus       156 ~~~i~~~~~~  165 (166)
T cd01869         156 FMTMAREIKK  165 (166)
T ss_pred             HHHHHHHHHh
Confidence            9999998865

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=100.00  E-value=1e-32  Score=185.15  Aligned_cols=156  Identities=17%  Similarity=0.256  Sum_probs=123.8

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEE-EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE-TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV   91 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (180)
                      .+||+++|++|+|||||+++++++. ...+.+|.+..+. .+..  ..+.+.+|||||++++..++..+++++|++++||
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   81 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF   81 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence            5899999999999999999999877 3344566553322 2333  3467899999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChHHHH
Q 030289           92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGL  169 (180)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  169 (180)
                      |++++.+++.+..|+..+.......+.|+++++||+|+.....  .++.. .    .....+++++++||++|.|++++|
T Consensus        82 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~-~----~~~~~~~~~~~~Sa~~~~~i~~l~  156 (164)
T cd04145          82 SVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQ-E----LARKLKIPYIETSAKDRLNVDKAF  156 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHH-H----HHHHcCCcEEEeeCCCCCCHHHHH
Confidence            9999999999999988887654446789999999999876432  22211 1    112234579999999999999999


Q ss_pred             HHHHHHh
Q 030289          170 DWLSSNV  176 (180)
Q Consensus       170 ~~l~~~~  176 (180)
                      +++++.+
T Consensus       157 ~~l~~~~  163 (164)
T cd04145         157 HDLVRVI  163 (164)
T ss_pred             HHHHHhh
Confidence            9998765

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=2e-32  Score=191.26  Aligned_cols=158  Identities=20%  Similarity=0.302  Sum_probs=125.5

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE--EEEE---cCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE--TVEY---KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV   90 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~--~~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (180)
                      +||+++|++|||||||+++|..+.+ ..+.+|.+.++.  .+..   ..+.+.+|||+|++.+...+..+++++|++++|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999998874 456788876543  3444   257899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhcccc--cCCCeEEEEEecCCCCCCCCHh-HHHhHhCCCccCCcceEEEEeeccCCCChHH
Q 030289           91 VDSNDRERIGEAKDELHRMLSEDE--LREAVLLVFANKQDLPNAMSVS-EVTDKLGLHSLRQRRWYIQAACATSGQGLYE  167 (180)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~iiiv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  167 (180)
                      ||++++++++.+..|+..+.....  ..++|+++|+||+|+.+..... +....    ..+..+++++++||++|+|+++
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~----~~~~~~~~~~~iSAktg~gv~~  156 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHAR----FAQANGMESCLVSAKTGDRVNL  156 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHH----HHHHcCCEEEEEECCCCCCHHH
Confidence            999999999999999888765432  2457899999999997533211 11111    1222346799999999999999


Q ss_pred             HHHHHHHHhhh
Q 030289          168 GLDWLSSNVSA  178 (180)
Q Consensus       168 ~~~~l~~~~~~  178 (180)
                      +|+++++.+..
T Consensus       157 lf~~l~~~l~~  167 (215)
T cd04109         157 LFQQLAAELLG  167 (215)
T ss_pred             HHHHHHHHHHh
Confidence            99999998754

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=4.8e-33  Score=193.88  Aligned_cols=161  Identities=16%  Similarity=0.219  Sum_probs=124.2

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEE-EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE-TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV   91 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (180)
                      ++||+++|++|||||||+++|..+. ...+.||++..+. .+..  ..+.+.+|||+|++.|..+++.+++++|++++||
T Consensus         1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf   80 (222)
T cd04173           1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF   80 (222)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence            4799999999999999999999887 4467788876553 3444  4578899999999999999999999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCCCC-HhH--------HHhHhCCCccCCcce-EEEEeecc
Q 030289           92 DSNDRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNAMS-VSE--------VTDKLGLHSLRQRRW-YIQAACAT  160 (180)
Q Consensus        92 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~-~~~--------~~~~~~~~~~~~~~~-~~~~~Sa~  160 (180)
                      |++++++++.+. .|...+ .. ..++.|+++|+||+|+.++.. ..+        +..+.+...++..++ +|++|||+
T Consensus        81 dis~~~Sf~~i~~~w~~~~-~~-~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk  158 (222)
T cd04173          81 DISRPETLDSVLKKWQGET-QE-FCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR  158 (222)
T ss_pred             ECCCHHHHHHHHHHHHHHH-Hh-hCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCC
Confidence            999999999995 455444 32 236799999999999965321 111        111222223334554 89999999


Q ss_pred             CCCC-hHHHHHHHHHHhhh
Q 030289          161 SGQG-LYEGLDWLSSNVSA  178 (180)
Q Consensus       161 ~~~~-i~~~~~~l~~~~~~  178 (180)
                      ++.+ |+++|..++.+...
T Consensus       159 ~~~~~V~~~F~~~~~~~~~  177 (222)
T cd04173         159 SSERSVRDVFHVATVASLG  177 (222)
T ss_pred             cCCcCHHHHHHHHHHHHHh
Confidence            9985 99999999987654

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=1.4e-32  Score=188.72  Aligned_cols=159  Identities=19%  Similarity=0.251  Sum_probs=123.7

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCCcc-ccccccceeE-EEEEEc--CeEEEEEEcCCCCCChhhHHhhccccCEEEEEEEC
Q 030289           18 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV-ETVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDS   93 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   93 (180)
                      ||+++|.+|||||||+++|..+.+. .+.+|++..+ ..+..+  .+.+.+|||||++++...+..+++++|++++|||+
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~   80 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI   80 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence            6899999999999999999987743 4556766433 233333  45689999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHhcccc--cCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHH
Q 030289           94 NDRERIGEAKDELHRMLSEDE--LREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDW  171 (180)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~--~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  171 (180)
                      +++++++.+..|+..+.....  ..+.|+++|+||+|+..........   ........+++++++||++|.|++++|++
T Consensus        81 ~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~---~~~~~~~~~~~~~e~SAk~~~~v~~l~~~  157 (190)
T cd04144          81 TSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEE---GAALARRLGCEFIEASAKTNVNVERAFYT  157 (190)
T ss_pred             CCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHH---HHHHHHHhCCEEEEecCCCCCCHHHHHHH
Confidence            999999999999887765432  3578999999999996533221111   11112234568999999999999999999


Q ss_pred             HHHHhhhc
Q 030289          172 LSSNVSAK  179 (180)
Q Consensus       172 l~~~~~~~  179 (180)
                      +++.+.++
T Consensus       158 l~~~l~~~  165 (190)
T cd04144         158 LVRALRQQ  165 (190)
T ss_pred             HHHHHHHh
Confidence            99987654

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=4.9e-33  Score=190.79  Aligned_cols=160  Identities=18%  Similarity=0.235  Sum_probs=123.6

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCCcc-ccccccceeEE-EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEE
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVD   92 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   92 (180)
                      .||+++|++|||||||+++|..+.+. .+.||.+..+. .+..  ..+.+.+||++|++.+..++..+++++|++++|||
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d   80 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS   80 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence            38999999999999999999988844 45677765543 2333  34789999999999999999999999999999999


Q ss_pred             CCChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHH---------hHhCCCccCCcc-eEEEEeeccC
Q 030289           93 SNDRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVT---------DKLGLHSLRQRR-WYIQAACATS  161 (180)
Q Consensus        93 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~Sa~~  161 (180)
                      ++++++++.+. .|+..+...  .++.|+++|+||+|+.......+..         ...+...+...+ ++|++|||++
T Consensus        81 v~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~  158 (189)
T cd04134          81 VDSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL  158 (189)
T ss_pred             CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence            99999999886 577777543  3579999999999997643322111         111111122223 6899999999


Q ss_pred             CCChHHHHHHHHHHhhh
Q 030289          162 GQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       162 ~~~i~~~~~~l~~~~~~  178 (180)
                      |.|++++|.++.+.+..
T Consensus       159 ~~~v~e~f~~l~~~~~~  175 (189)
T cd04134         159 NRGVNEAFTEAARVALN  175 (189)
T ss_pred             CCCHHHHHHHHHHHHhc
Confidence            99999999999988764

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=4e-32  Score=187.68  Aligned_cols=157  Identities=24%  Similarity=0.391  Sum_probs=127.0

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeE--EEEEEc--CeEEEEEEcCCCCCChhhHHhhccccCEEEE
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV--ETVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF   89 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   89 (180)
                      ..+||+++|++|||||||+++|.++.+ ..+.+|.+..+  ..+...  .+.+.+||+||++.+...+..++++++++++
T Consensus         5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil   84 (199)
T cd04110           5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV   84 (199)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence            468999999999999999999998874 45667877554  344443  4678999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCH--hHHHhHhCCCccCCcceEEEEeeccCCCChHH
Q 030289           90 VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSV--SEVTDKLGLHSLRQRRWYIQAACATSGQGLYE  167 (180)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  167 (180)
                      |||++++++++.+..|+..+...  ....|+++|+||+|+.+....  ++....     ....+.+++++|+++|.||++
T Consensus        85 v~D~~~~~s~~~~~~~~~~i~~~--~~~~piivVgNK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~~~gi~~  157 (199)
T cd04110          85 VYDVTNGESFVNVKRWLQEIEQN--CDDVCKVLVGNKNDDPERKVVETEDAYKF-----AGQMGISLFETSAKENINVEE  157 (199)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECcccccccccCHHHHHHH-----HHHcCCEEEEEECCCCcCHHH
Confidence            99999999999999999887554  357899999999998764322  222211     122346899999999999999


Q ss_pred             HHHHHHHHhhh
Q 030289          168 GLDWLSSNVSA  178 (180)
Q Consensus       168 ~~~~l~~~~~~  178 (180)
                      +|+++.+.+..
T Consensus       158 lf~~l~~~~~~  168 (199)
T cd04110         158 MFNCITELVLR  168 (199)
T ss_pred             HHHHHHHHHHH
Confidence            99999998765

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04159 Arl10_like Arl10-like subfamily

Probab=100.00  E-value=2e-31  Score=177.58  Aligned_cols=156  Identities=38%  Similarity=0.685  Sum_probs=134.0

Q ss_pred             EEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChh
Q 030289           19 ILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRE   97 (180)
Q Consensus        19 i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~   97 (180)
                      |+++|++|||||||++++.+.+ ..++.||.+.....+...+..+.+||+||+..++..+..+++++|++++|+|+++++
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~   81 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRT   81 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHH
Confidence            7999999999999999999887 556678888888777778899999999999999999999999999999999999998


Q ss_pred             hHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHH
Q 030289           98 RIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSS  174 (180)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  174 (180)
                      ++.....++..+.......++|+++|+||+|+.+....+++.............++++++|+++|.|++++++++.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  158 (159)
T cd04159          82 ALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK  158 (159)
T ss_pred             HHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence            88888888888776544567899999999999876655555556555544455678999999999999999999875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=8.4e-33  Score=187.23  Aligned_cols=158  Identities=19%  Similarity=0.254  Sum_probs=120.3

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE-EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE-TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV   91 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (180)
                      ++||+++|++|||||||+.++..+.+ ..+.||.+..+. .+..  ..+++.+|||+|++.+...+..+++++|++++||
T Consensus         1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            47999999999999999999998874 556777764332 3333  4478899999999999999999999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCCC-CHhHHHhH--------hCCCccCCcc-eEEEEeecc
Q 030289           92 DSNDRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNAM-SVSEVTDK--------LGLHSLRQRR-WYIQAACAT  160 (180)
Q Consensus        92 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~-~~~~~~~~--------~~~~~~~~~~-~~~~~~Sa~  160 (180)
                      |++++++++.+. .|+..+...  .++.|+++|+||+|+.+.. ..+.+...        .+...++..+ .++++|||+
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  158 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  158 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence            999999999996 576666443  3579999999999986432 11111111        1111122233 489999999


Q ss_pred             CCCChHHHHHHHHHH
Q 030289          161 SGQGLYEGLDWLSSN  175 (180)
Q Consensus       161 ~~~~i~~~~~~l~~~  175 (180)
                      +|.|++++|+.+++.
T Consensus       159 ~~~~i~~~f~~l~~~  173 (174)
T cd01871         159 TQKGLKTVFDEAIRA  173 (174)
T ss_pred             ccCCHHHHHHHHHHh
Confidence            999999999999875

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=8.3e-32  Score=181.07  Aligned_cols=156  Identities=16%  Similarity=0.241  Sum_probs=120.4

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEEE-EE--EcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEE
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET-VE--YKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVD   92 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~~-~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   92 (180)
                      +||+++|++|||||||++++.++.+ ..+.||.+..+.. +.  ...+.+.+|||||++++..++..+++.+|++++|||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d   81 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence            7999999999999999999998874 4556666644432 22  245789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHhccc--ccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHH
Q 030289           93 SNDRERIGEAKDELHRMLSED--ELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLD  170 (180)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  170 (180)
                      ++++++++.+..|+..+....  ..+++|+++|+||+|+.+.........   .......+.++++|||++|.|++++|+
T Consensus        82 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~---~~~~~~~~~~~~e~SA~~g~~v~~~f~  158 (165)
T cd04140          82 VTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEG---AACATEWNCAFMETSAKTNHNVQELFQ  158 (165)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHH---HHHHHHhCCcEEEeecCCCCCHHHHHH
Confidence            999999999998877664432  236799999999999976332211110   011122346799999999999999999


Q ss_pred             HHHHH
Q 030289          171 WLSSN  175 (180)
Q Consensus       171 ~l~~~  175 (180)
                      +|++.
T Consensus       159 ~l~~~  163 (165)
T cd04140         159 ELLNL  163 (165)
T ss_pred             HHHhc
Confidence            99753

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=1e-31  Score=184.23  Aligned_cols=158  Identities=23%  Similarity=0.384  Sum_probs=126.0

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCCccc-cccccceeE--EEEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV   91 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (180)
                      +||+++|++|||||||+++|.++.+.. +.+|.+..+  ..+..  ..+.+.+||+||++.+...+..+++++|++++||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            589999999999999999999888554 677777544  33444  3467899999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhH-HHhHhCCCccCCcceEEEEeeccCCCChHHHHH
Q 030289           92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSE-VTDKLGLHSLRQRRWYIQAACATSGQGLYEGLD  170 (180)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  170 (180)
                      |++++++++.+..|+..+.... ..+.|+++|+||+|+.+...... ....+    ....+++++++||++|.|++++|.
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~----~~~~~~~~~evSa~~~~~i~~~f~  155 (188)
T cd04125          81 DVTDQESFENLKFWINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIAKSF----CDSLNIPFFETSAKQSINVEEAFI  155 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHHHHH----HHHcCCeEEEEeCCCCCCHHHHHH
Confidence            9999999999999988876542 24589999999999875432211 11111    122355899999999999999999


Q ss_pred             HHHHHhhhc
Q 030289          171 WLSSNVSAK  179 (180)
Q Consensus       171 ~l~~~~~~~  179 (180)
                      ++.+.+.++
T Consensus       156 ~l~~~~~~~  164 (188)
T cd04125         156 LLVKLIIKR  164 (188)
T ss_pred             HHHHHHHHH
Confidence            999987653

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=1.1e-31  Score=180.91  Aligned_cols=158  Identities=19%  Similarity=0.328  Sum_probs=125.7

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCCcc-ccccccceeE--EEEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV   90 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (180)
                      .+||+++|++|||||||++++.++.+. .+.+|.+...  ..+..  ....+.+||+||++++......+++++|++++|
T Consensus         4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v   83 (168)
T cd01866           4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV   83 (168)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence            489999999999999999999988733 3345655443  33333  346899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC--CHhHHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289           91 VDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM--SVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG  168 (180)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (180)
                      ||++++.+++.+..|+..+.... .++.|+++|+||.|+.+..  ..++....     +...+++++++||+++.|++++
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~~~~i~~~  157 (168)
T cd01866          84 YDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAF-----AKEHGLIFMETSAKTASNVEEA  157 (168)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHH-----HHHcCCEEEEEeCCCCCCHHHH
Confidence            99999999999999998886543 3679999999999987533  23332222     1233568999999999999999


Q ss_pred             HHHHHHHhhhc
Q 030289          169 LDWLSSNVSAK  179 (180)
Q Consensus       169 ~~~l~~~~~~~  179 (180)
                      |.++.+.+.++
T Consensus       158 ~~~~~~~~~~~  168 (168)
T cd01866         158 FINTAKEIYEK  168 (168)
T ss_pred             HHHHHHHHHhC
Confidence            99999988653

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=1.6e-31  Score=178.93  Aligned_cols=155  Identities=16%  Similarity=0.293  Sum_probs=121.6

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCCcc-ccccccceeEE--EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV   91 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (180)
                      +||+++|++|||||||++++..+.+. .+.+|.+....  .+..  ..+.+.+|||||++.+...+..+++++|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999988743 33445543332  2222  4568899999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHH
Q 030289           92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDW  171 (180)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  171 (180)
                      |++++.+++.+..|+..+...  .++.|+++|+||+|+.... ..+.. .+    ....+++++++||++|.|++++|+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~~~-~~~~~-~~----~~~~~~~~~~~Sa~~~~gv~~l~~~  152 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDPSV-TQKKF-NF----AEKHNLPLYYVSAADGTNVVKLFQD  152 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCchhH-HHHHH-HH----HHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            999999999999998887543  3578999999999985421 11111 11    1223468999999999999999999


Q ss_pred             HHHHhhhc
Q 030289          172 LSSNVSAK  179 (180)
Q Consensus       172 l~~~~~~~  179 (180)
                      +.+.+.++
T Consensus       153 l~~~~~~~  160 (161)
T cd04124         153 AIKLAVSY  160 (161)
T ss_pred             HHHHHHhc
Confidence            99987764

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=1.6e-31  Score=179.68  Aligned_cols=155  Identities=19%  Similarity=0.381  Sum_probs=124.2

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEE--EEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE--TVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV   90 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (180)
                      .+||+++|++|||||||++++.++. ...+.||.+..+.  .+...+  ..+.+||+||++++...+..++++++++++|
T Consensus         3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   82 (165)
T cd01868           3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   82 (165)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence            4799999999999999999999887 4455677775443  344433  6789999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289           91 VDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG  168 (180)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (180)
                      ||++++.+++.+..|+..+.... ..+.|+++|+||+|+.....  .++.....     ...+++++++||++|.|++++
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~l  156 (165)
T cd01868          83 YDITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFA-----EKNGLSFIETSALDGTNVEEA  156 (165)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHH
Confidence            99999999999999998876543 24689999999999875332  22222221     123468999999999999999


Q ss_pred             HHHHHHHh
Q 030289          169 LDWLSSNV  176 (180)
Q Consensus       169 ~~~l~~~~  176 (180)
                      |+++.+.+
T Consensus       157 ~~~l~~~i  164 (165)
T cd01868         157 FKQLLTEI  164 (165)
T ss_pred             HHHHHHHh
Confidence            99998765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=100.00  E-value=9e-32  Score=181.72  Aligned_cols=158  Identities=22%  Similarity=0.400  Sum_probs=124.5

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE--EEEEc--CeEEEEEEcCCCCCCh-hhHHhhccccCEEEE
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE--TVEYK--NVSFTVWDVGGQDKIR-PLWRHYFQNTHGLIF   89 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~-~~~~~~~~~~~~~i~   89 (180)
                      .+||+++|++|||||||+++++.+.+ ..+.+|.+..+.  .+...  .+.+.+||+||++.+. ..+..+++++|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            58999999999999999999998874 345677765443  34443  4789999999999886 568889999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHh-HHHhHhCCCccCCcceEEEEeeccC---CCCh
Q 030289           90 VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVS-EVTDKLGLHSLRQRRWYIQAACATS---GQGL  165 (180)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i  165 (180)
                      |||++++++++.+..|+..+.......++|+++|+||+|+....... +....+.    ...+++|++|||++   +.++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~~~~i  157 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFA----DAHSMPLFETSAKDPSENDHV  157 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHH----HHcCCcEEEEeccCCcCCCCH
Confidence            99999999999999999887665444679999999999987543321 1122221    22346899999999   8999


Q ss_pred             HHHHHHHHHHhh
Q 030289          166 YEGLDWLSSNVS  177 (180)
Q Consensus       166 ~~~~~~l~~~~~  177 (180)
                      +++|..+++.+.
T Consensus       158 ~~~f~~l~~~~~  169 (170)
T cd04115         158 EAIFMTLAHKLK  169 (170)
T ss_pred             HHHHHHHHHHhh
Confidence            999999998763

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=2.2e-31  Score=179.75  Aligned_cols=158  Identities=16%  Similarity=0.331  Sum_probs=124.3

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCcc-ccccccceeEE--EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLI   88 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   88 (180)
                      +..+||+++|++|||||||++++..+.+. .+.+|.+....  .+..  ..+.+.+||+||++++...+..+++++|+++
T Consensus         3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   82 (170)
T cd04116           3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL   82 (170)
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence            45689999999999999999999987743 45667775543  3333  4567899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcccc---cCCCeEEEEEecCCCCCC-CCHhHHHhHhCCCccCCcc-eEEEEeeccCCC
Q 030289           89 FVVDSNDRERIGEAKDELHRMLSEDE---LREAVLLVFANKQDLPNA-MSVSEVTDKLGLHSLRQRR-WYIQAACATSGQ  163 (180)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~iiiv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~  163 (180)
                      +|||++++++++.+..|+..+.....   ..++|+++|+||+|+... ...++..+..     +..+ .+++++||++|.
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~~~  157 (170)
T cd04116          83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWC-----RENGDYPYFETSAKDAT  157 (170)
T ss_pred             EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHH-----HHCCCCeEEEEECCCCC
Confidence            99999999999999999887765432   356899999999998642 2333332221     1122 379999999999


Q ss_pred             ChHHHHHHHHHHh
Q 030289          164 GLYEGLDWLSSNV  176 (180)
Q Consensus       164 ~i~~~~~~l~~~~  176 (180)
                      |++++|+++++.+
T Consensus       158 ~v~~~~~~~~~~~  170 (170)
T cd04116         158 NVAAAFEEAVRRV  170 (170)
T ss_pred             CHHHHHHHHHhhC
Confidence            9999999998753

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=1.5e-31  Score=186.84  Aligned_cols=160  Identities=21%  Similarity=0.366  Sum_probs=129.3

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE--EEEEc--CeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE--TVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLI   88 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   88 (180)
                      ...+||+++|++|||||||+++|.++.+ ..+.+|++..+.  .+..+  .+.+.+||++|++++...+..+++++++++
T Consensus        10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i   89 (216)
T PLN03110         10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL   89 (216)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence            4568999999999999999999998884 456688876553  44443  468999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHh-HHHhHhCCCccCCcceEEEEeeccCCCChHH
Q 030289           89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVS-EVTDKLGLHSLRQRRWYIQAACATSGQGLYE  167 (180)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  167 (180)
                      +|||++++.+++.+..|+..+.... ..++|+++|+||+|+....... +....+.    ...+++++++||++|.|+++
T Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~----~~~~~~~~e~SA~~g~~v~~  164 (216)
T PLN03110         90 LVYDITKRQTFDNVQRWLRELRDHA-DSNIVIMMAGNKSDLNHLRSVAEEDGQALA----EKEGLSFLETSALEATNVEK  164 (216)
T ss_pred             EEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEEChhcccccCCCHHHHHHHH----HHcCCEEEEEeCCCCCCHHH
Confidence            9999999999999999988875542 3579999999999986544322 1222222    23457899999999999999


Q ss_pred             HHHHHHHHhhh
Q 030289          168 GLDWLSSNVSA  178 (180)
Q Consensus       168 ~~~~l~~~~~~  178 (180)
                      +|+++++.+.+
T Consensus       165 lf~~l~~~i~~  175 (216)
T PLN03110        165 AFQTILLEIYH  175 (216)
T ss_pred             HHHHHHHHHHH
Confidence            99999988754

>cd04103 Centaurin_gamma Centaurin gamma

Probab=100.00  E-value=5.4e-32  Score=180.45  Aligned_cols=152  Identities=16%  Similarity=0.247  Sum_probs=114.7

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCCcccc-ccccceeEEEEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEEEEEEEC
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDS   93 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~~~~~-~~t~~~~~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   93 (180)
                      +||+++|++|||||||++++..+.+... .|+.+.....+..++  +.+.+||++|++.     ..+++++|++++|||+
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~   75 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSL   75 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEEC
Confidence            5899999999999999999988774443 344443344555555  6799999999974     3466889999999999


Q ss_pred             CChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC--CCCHhHHHhHhCCCccCC-cceEEEEeeccCCCChHHHHH
Q 030289           94 NDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN--AMSVSEVTDKLGLHSLRQ-RRWYIQAACATSGQGLYEGLD  170 (180)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~  170 (180)
                      +++++++.+..|+..+.......+.|+++|+||+|+..  .....   ...+...++. ..+.|++|||++|.||+++|.
T Consensus        76 ~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~---~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~  152 (158)
T cd04103          76 ENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVID---DARARQLCADMKRCSYYETCATYGLNVERVFQ  152 (158)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccC---HHHHHHHHHHhCCCcEEEEecCCCCCHHHHHH
Confidence            99999999999999887654446789999999999843  12111   1111111222 246899999999999999999


Q ss_pred             HHHHHh
Q 030289          171 WLSSNV  176 (180)
Q Consensus       171 ~l~~~~  176 (180)
                      .+++.+
T Consensus       153 ~~~~~~  158 (158)
T cd04103         153 EAAQKI  158 (158)
T ss_pred             HHHhhC
Confidence            998653

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=1e-31  Score=180.01  Aligned_cols=152  Identities=17%  Similarity=0.345  Sum_probs=121.8

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEEE--EEE----cCeEEEEEEcCCCCCChhhHHhhccccCEEEE
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET--VEY----KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF   89 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~~--~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   89 (180)
                      +||+++|++|+|||||++++..+.+ ..+.+|.+..+..  +..    ..+++.+||+||++.+...+..+++++|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            5899999999999999999998874 3456777765533  333    35789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChHH
Q 030289           90 VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYE  167 (180)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  167 (180)
                      |||++++++++.+..|+..+...  ..++|+++|+||+|+..+..  .++....     ....+++++++|+++|.|+++
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~~  153 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAE--CGDIPMVLVQTKIDLLDQAVITNEEAEAL-----AKRLQLPLFRTSVKDDFNVTE  153 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhcccccCCCHHHHHHH-----HHHcCCeEEEEECCCCCCHHH
Confidence            99999999999999998887543  35799999999999876433  2222211     122345899999999999999


Q ss_pred             HHHHHHHH
Q 030289          168 GLDWLSSN  175 (180)
Q Consensus       168 ~~~~l~~~  175 (180)
                      +|+++.+.
T Consensus       154 l~~~l~~~  161 (162)
T cd04106         154 LFEYLAEK  161 (162)
T ss_pred             HHHHHHHh
Confidence            99999865

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>PLN03118 Rab family protein; Provisional

Probab=100.00  E-value=2.3e-31  Score=185.53  Aligned_cols=161  Identities=21%  Similarity=0.386  Sum_probs=125.8

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEE--EEEEc--CeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLI   88 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   88 (180)
                      ....+||+|+|++|||||||+++|.++.+..+.+|.+..+.  .+..+  .+.+.+|||||++++...+..+++++|+++
T Consensus        11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~v   90 (211)
T PLN03118         11 YDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGII   90 (211)
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            35579999999999999999999998887677778776543  34443  468899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhc-ccccCCCeEEEEEecCCCCCCCCH--hHHHhHhCCCccCCcceEEEEeeccCCCCh
Q 030289           89 FVVDSNDRERIGEAKDELHRMLS-EDELREAVLLVFANKQDLPNAMSV--SEVTDKLGLHSLRQRRWYIQAACATSGQGL  165 (180)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~iiiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  165 (180)
                      +|||++++++++.+..++...+. .....+.|+++|+||+|+......  ++...     .....+++|+++||+++.|+
T Consensus        91 lv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~-----~~~~~~~~~~e~SAk~~~~v  165 (211)
T PLN03118         91 LVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMA-----LAKEHGCLFLECSAKTRENV  165 (211)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHH-----HHHHcCCEEEEEeCCCCCCH
Confidence            99999999999999764433332 222346799999999998754332  22111     11233567999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 030289          166 YEGLDWLSSNVSA  178 (180)
Q Consensus       166 ~~~~~~l~~~~~~  178 (180)
                      +++|+++.+.+.+
T Consensus       166 ~~l~~~l~~~~~~  178 (211)
T PLN03118        166 EQCFEELALKIME  178 (211)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988754

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=1.8e-31  Score=183.36  Aligned_cols=157  Identities=18%  Similarity=0.427  Sum_probs=125.2

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCCcc--ccccccceeEE--EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVE--TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV   90 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~~~--~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (180)
                      +||+++|++|||||||++++..+.+.  .+.+|.+..+.  .+..  ..+.+.+|||||++++...+..+++++|++++|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            58999999999999999999988743  45677765443  2444  347899999999999998899999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC--CHhHHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289           91 VDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM--SVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG  168 (180)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (180)
                      ||++++++++.+..|+..+... ...++|+++|+||+|+..+.  ..++.. .+.    ...+.+++++||++|.|++++
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~~~~~~~~-~l~----~~~~~~~~e~Sa~~~~~v~~l  154 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEY-AQEDVVIMLLGNKADMSGERVVKREDGE-RLA----KEYGVPFMETSAKTGLNVELA  154 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEcccchhccccCHHHHH-HHH----HHcCCeEEEEeCCCCCCHHHH
Confidence            9999999999999998887654 23478999999999996432  222222 211    223468999999999999999


Q ss_pred             HHHHHHHhhhc
Q 030289          169 LDWLSSNVSAK  179 (180)
Q Consensus       169 ~~~l~~~~~~~  179 (180)
                      |.++.+.+.++
T Consensus       155 ~~~l~~~~~~~  165 (191)
T cd04112         155 FTAVAKELKHR  165 (191)
T ss_pred             HHHHHHHHHHh
Confidence            99999988654

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=2.9e-32  Score=182.66  Aligned_cols=154  Identities=27%  Similarity=0.433  Sum_probs=126.8

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEEE--EE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEE
Q 030289           18 RILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETV--EY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVD   92 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~~--~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   92 (180)
                      ||+++|++|||||||+++|.++. ...+.+|.+......  ..  ..+.+.+||++|++.+......+++++|++++|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999888 455667876655443  33  45779999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC--CCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHH
Q 030289           93 SNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA--MSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLD  170 (180)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  170 (180)
                      ++++++++.+..|+..+..... .+.|+++++||+|+.+.  ...++...     .++..+.+|++||++++.||+++|.
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~-----~~~~~~~~~~e~Sa~~~~~v~~~f~  154 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQE-----FAKELGVPYFEVSAKNGENVKEIFQ  154 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHH-----HHHHTTSEEEEEBTTTTTTHHHHHH
T ss_pred             cccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHH-----HHHHhCCEEEEEECCCCCCHHHHHH
Confidence            9999999999999998876543 46899999999998763  23333221     1223346899999999999999999


Q ss_pred             HHHHHhh
Q 030289          171 WLSSNVS  177 (180)
Q Consensus       171 ~l~~~~~  177 (180)
                      .+++.+.
T Consensus       155 ~~i~~i~  161 (162)
T PF00071_consen  155 ELIRKIL  161 (162)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=1.8e-31  Score=183.64  Aligned_cols=149  Identities=21%  Similarity=0.345  Sum_probs=122.8

Q ss_pred             EcCCCCChHHHHHHhhcCCcc-ccccccceeEEEEEE----cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCCh
Q 030289           22 VGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDR   96 (180)
Q Consensus        22 ~G~~~~GKStli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~   96 (180)
                      +|++|||||||+++++.+.+. .+.+|++..+....+    ..+.+.+|||+|++++..++..+++++|++++|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            699999999999999988754 567888876654433    468999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC-CHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHH
Q 030289           97 ERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM-SVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSN  175 (180)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  175 (180)
                      .+++.+..|+..+....  .++|+++|+||+|+.... ..+..      ......++.|++|||++|.||+++|.++++.
T Consensus        81 ~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~------~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~  152 (200)
T smart00176       81 VTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKDRKVKAKSI------TFHRKKNLQYYDISAKSNYNFEKPFLWLARK  152 (200)
T ss_pred             HHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCHHHH------HHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999886542  579999999999986422 11111      1223446789999999999999999999988


Q ss_pred             hhh
Q 030289          176 VSA  178 (180)
Q Consensus       176 ~~~  178 (180)
                      +.+
T Consensus       153 i~~  155 (200)
T smart00176      153 LIG  155 (200)
T ss_pred             HHh
Confidence            764

Ran is involved in the active transport of proteins through nuclear pores.

>cd04113 Rab4 Rab4 subfamily

Probab=100.00  E-value=2.4e-31  Score=178.11  Aligned_cols=154  Identities=19%  Similarity=0.373  Sum_probs=121.6

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE--EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE--TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV   91 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (180)
                      +||+++|++|||||||++++.++.+ ..+.+|.+..+.  .+..  ..+.+.+||+||++.+...+..+++++|++++||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            6899999999999999999998873 444556654443  3333  3467899999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChHHHH
Q 030289           92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGL  169 (180)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  169 (180)
                      |++++++++.+..|+..+... ..++.|+++|+||+|+.....  .++.....     ...+..++++||+++.|++++|
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~  154 (161)
T cd04113          81 DITNRTSFEALPTWLSDARAL-ASPNIVVILVGNKSDLADQREVTFLEASRFA-----QENGLLFLETSALTGENVEEAF  154 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEEchhcchhccCCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHHH
Confidence            999999999999998876433 246899999999999875332  22222211     1234689999999999999999


Q ss_pred             HHHHHHh
Q 030289          170 DWLSSNV  176 (180)
Q Consensus       170 ~~l~~~~  176 (180)
                      +++++.+
T Consensus       155 ~~~~~~~  161 (161)
T cd04113         155 LKCARSI  161 (161)
T ss_pred             HHHHHhC
Confidence            9998753

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.98  E-value=1.5e-31  Score=168.06  Aligned_cols=171  Identities=32%  Similarity=0.628  Sum_probs=159.1

Q ss_pred             HhhhcccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCE
Q 030289            8 LKMLFARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHG   86 (180)
Q Consensus         8 ~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   86 (180)
                      +.+.+-..++.+.++|..++|||||+|....+. .....||+|++...++-.+..+.+||.||++.++..|+.|++.+++
T Consensus        12 i~~~f~k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~a   91 (186)
T KOG0075|consen   12 ICNSFWKEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSA   91 (186)
T ss_pred             HHHHHHHheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcE
Confidence            356666779999999999999999999999877 5556799999999999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChH
Q 030289           87 LIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLY  166 (180)
Q Consensus        87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  166 (180)
                      ++||+|+.+++.++.....+++++..+...++|+++.+||.|++.+.+..++....++....++.+.+|.+|+++..||+
T Consensus        92 ivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid  171 (186)
T KOG0075|consen   92 IVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNID  171 (186)
T ss_pred             EEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHH
Confidence            99999999999999999999999998888899999999999999998888899999999999999999999999999999


Q ss_pred             HHHHHHHHHhhh
Q 030289          167 EGLDWLSSNVSA  178 (180)
Q Consensus       167 ~~~~~l~~~~~~  178 (180)
                      -+.+|+++....
T Consensus       172 ~~~~Wli~hsk~  183 (186)
T KOG0075|consen  172 ITLDWLIEHSKS  183 (186)
T ss_pred             HHHHHHHHHhhh
Confidence            999999987643

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.98  E-value=3.7e-31  Score=177.56  Aligned_cols=157  Identities=22%  Similarity=0.437  Sum_probs=125.8

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEE--EEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE--TVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV   91 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (180)
                      +||+++|++|||||||++++.+.. ...+.++.+..+.  .+...+  ..+.+||+||++.+...+..+++.+|++++||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            689999999999999999999877 3444566665443  344433  68899999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC--CHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHH
Q 030289           92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM--SVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGL  169 (180)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  169 (180)
                      |++++.+++.+..|+..+..... +++|+++|+||+|+....  ..+.... +    .+..+++++++|+.+|.|+++++
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~~~~~~~~~~~~~-~----~~~~~~~~~e~Sa~~~~~i~~l~  154 (164)
T smart00175       81 DITNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLEDQRQVSREEAEA-F----AEEHGLPFFETSAKTNTNVEEAF  154 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhcccccCCCHHHHHH-H----HHHcCCeEEEEeCCCCCCHHHHH
Confidence            99999999999999888765432 579999999999987632  2222222 1    12345679999999999999999


Q ss_pred             HHHHHHhhhc
Q 030289          170 DWLSSNVSAK  179 (180)
Q Consensus       170 ~~l~~~~~~~  179 (180)
                      +++.+.+.++
T Consensus       155 ~~i~~~~~~~  164 (164)
T smart00175      155 EELAREILKR  164 (164)
T ss_pred             HHHHHHHhhC
Confidence            9999988764

Rab GTPases are implicated in vesicle trafficking.

>cd04118 Rab24 Rab24 subfamily

Probab=99.98  E-value=2e-31  Score=183.54  Aligned_cols=160  Identities=16%  Similarity=0.239  Sum_probs=123.5

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCCcc--ccccccceeEE--EEEEc--CeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVE--TVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV   90 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~~~--~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (180)
                      +||+|+|++|+|||||+++|..+.+.  .+.+|++..+.  .+...  .+.+.+||++|++++..++..+++++|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            48999999999999999999988854  46778775442  34443  46778999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC-HhHHHhHhCCCccCCcceEEEEeeccCCCChHHHH
Q 030289           91 VDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS-VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGL  169 (180)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  169 (180)
                      ||++++.+++.+..|+..+...  ..+.|+++|+||+|+.+... ..++............+++++++||+++.|++++|
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  158 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNL--EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELF  158 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            9999999999998898887553  34789999999999864221 10110000011122335679999999999999999


Q ss_pred             HHHHHHhhh
Q 030289          170 DWLSSNVSA  178 (180)
Q Consensus       170 ~~l~~~~~~  178 (180)
                      +++.+.+.+
T Consensus       159 ~~i~~~~~~  167 (193)
T cd04118         159 QKVAEDFVS  167 (193)
T ss_pred             HHHHHHHHH
Confidence            999988755

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.98  E-value=4.3e-31  Score=177.15  Aligned_cols=155  Identities=21%  Similarity=0.402  Sum_probs=125.0

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCCccc-cccccceeE--EEEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV   90 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (180)
                      ++||+++|++|||||||+|++.++.+.. +.+|.+..+  ..+..  ..+.+.+||+||++++...+..+++++|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            4799999999999999999999988554 667776433  34444  457899999999999998999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC--CHhHHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289           91 VDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM--SVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG  168 (180)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (180)
                      +|++++++++....|+..+..... +..|+++++||+|+.+..  ..++....     ....+.+++++||++|.|++++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~~l  154 (163)
T cd01860          81 YDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKRQVSTEEAQEY-----ADENGLLFFETSAKTGENVNEL  154 (163)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccCcCCHHHHHHH-----HHHcCCEEEEEECCCCCCHHHH
Confidence            999999999999999998866533 679999999999987432  23222221     1122367999999999999999


Q ss_pred             HHHHHHHh
Q 030289          169 LDWLSSNV  176 (180)
Q Consensus       169 ~~~l~~~~  176 (180)
                      ++++++.+
T Consensus       155 ~~~l~~~l  162 (163)
T cd01860         155 FTEIAKKL  162 (163)
T ss_pred             HHHHHHHh
Confidence            99999876

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd01864 Rab19 Rab19 subfamily

Probab=99.98  E-value=3.1e-31  Score=178.23  Aligned_cols=156  Identities=22%  Similarity=0.394  Sum_probs=122.6

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCCcc-cccccccee--EEEEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEEEE
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGLIF   89 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   89 (180)
                      ..+||+++|++|+|||||++++..+.+. ++.+|.+..  ...+...+  +.+.+||+||++.+...+..+++++|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            4589999999999999999999987743 445666543  34555544  688999999999999899999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcc-eEEEEeeccCCCChH
Q 030289           90 VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRR-WYIQAACATSGQGLY  166 (180)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~  166 (180)
                      |||++++.+++.+..|+..+.... ..++|+++|+||+|+.....  ..+....     .+..+ ..++++||++|.|++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~e~Sa~~~~~v~  155 (165)
T cd01864          82 AYDITRRSSFESVPHWIEEVEKYG-ASNVVLLLIGNKCDLEEQREVLFEEACTL-----AEKNGMLAVLETSAKESQNVE  155 (165)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHH-----HHHcCCcEEEEEECCCCCCHH
Confidence            999999999999999998886532 35789999999999875432  2222111     11122 368999999999999


Q ss_pred             HHHHHHHHHh
Q 030289          167 EGLDWLSSNV  176 (180)
Q Consensus       167 ~~~~~l~~~~  176 (180)
                      ++|+++.+.+
T Consensus       156 ~~~~~l~~~l  165 (165)
T cd01864         156 EAFLLMATEL  165 (165)
T ss_pred             HHHHHHHHhC
Confidence            9999998753

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04177 RSR1 RSR1 subgroup

Probab=99.98  E-value=2.9e-31  Score=178.90  Aligned_cols=157  Identities=16%  Similarity=0.255  Sum_probs=124.3

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeE-EEEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV-ETVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV   91 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~-~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (180)
                      .+||+++|++|||||||++++.++.+ .++.+|.+..+ ..+..  ..+.+.+|||||++.+..+++.+++.++++++||
T Consensus         1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~   80 (168)
T cd04177           1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY   80 (168)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence            47999999999999999999998884 44566666333 33333  3468899999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcc-eEEEEeeccCCCChHHH
Q 030289           92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRR-WYIQAACATSGQGLYEG  168 (180)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~  168 (180)
                      |++++++++....|...+.......+.|+++++||+|+.+...  .++... +    .+..+ ++++++||+++.|++++
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~-~----~~~~~~~~~~~~SA~~~~~i~~~  155 (168)
T cd04177          81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVS-L----SQQWGNVPFYETSARKRTNVDEV  155 (168)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHH-H----HHHcCCceEEEeeCCCCCCHHHH
Confidence            9999999999999888876544446899999999999865432  222111 1    11222 68999999999999999


Q ss_pred             HHHHHHHhh
Q 030289          169 LDWLSSNVS  177 (180)
Q Consensus       169 ~~~l~~~~~  177 (180)
                      |++++..+.
T Consensus       156 f~~i~~~~~  164 (168)
T cd04177         156 FIDLVRQII  164 (168)
T ss_pred             HHHHHHHHh
Confidence            999998653

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=99.98  E-value=3.9e-32  Score=171.02  Aligned_cols=158  Identities=22%  Similarity=0.358  Sum_probs=130.5

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeE--EEEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV--ETVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV   90 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (180)
                      -++.+|+|++|+|||+|+.+|..+. ..+|..|+|.++  .++.+  +.++++|||++|+++++.++..|+++.+++++|
T Consensus         8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vV   87 (198)
T KOG0079|consen    8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVV   87 (198)
T ss_pred             HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEE
Confidence            3678899999999999999999887 445666777554  45554  678999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHH
Q 030289           91 VDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLD  170 (180)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  170 (180)
                      ||+++.++|.....|++.+.+.  -.++|-++|+||+|+++..-++..   ....++.+.++.+|++|+++++|++..|.
T Consensus        88 YDVTn~ESF~Nv~rWLeei~~n--cdsv~~vLVGNK~d~~~RrvV~t~---dAr~~A~~mgie~FETSaKe~~NvE~mF~  162 (198)
T KOG0079|consen   88 YDVTNGESFNNVKRWLEEIRNN--CDSVPKVLVGNKNDDPERRVVDTE---DARAFALQMGIELFETSAKENENVEAMFH  162 (198)
T ss_pred             EECcchhhhHhHHHHHHHHHhc--CccccceecccCCCCccceeeehH---HHHHHHHhcCchheehhhhhcccchHHHH
Confidence            9999999999999999999654  358899999999999875433221   11233455678899999999999999999


Q ss_pred             HHHHHhhh
Q 030289          171 WLSSNVSA  178 (180)
Q Consensus       171 ~l~~~~~~  178 (180)
                      .|.++..+
T Consensus       163 cit~qvl~  170 (198)
T KOG0079|consen  163 CITKQVLQ  170 (198)
T ss_pred             HHHHHHHH
Confidence            99887654

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=99.98  E-value=1.8e-32  Score=175.29  Aligned_cols=162  Identities=20%  Similarity=0.409  Sum_probs=133.5

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCccc-cccccceeEE--EEEE---cCeEEEEEEcCCCCCChhhHHhhccccCEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY---KNVSFTVWDVGGQDKIRPLWRHYFQNTHGL   87 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~-~~~t~~~~~~--~~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   87 (180)
                      ..+|+.++||++-+|||+|++.|..+++.+ ..||+|+++.  -+..   ..+++++|||+|++++++.++.||+++-++
T Consensus         6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv   85 (213)
T KOG0091|consen    6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV   85 (213)
T ss_pred             EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence            457999999999999999999999988443 4688887653  2333   457899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhcccccC-CCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChH
Q 030289           88 IFVVDSNDRERIGEAKDELHRMLSEDELR-EAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLY  166 (180)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  166 (180)
                      ++|||++|.++++-...|+++.......+ ++.+.+|++|+|+...+.+.   .+.+...+..++..|+++|+++|.||+
T Consensus        86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt---~EEaEklAa~hgM~FVETSak~g~NVe  162 (213)
T KOG0091|consen   86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVT---AEEAEKLAASHGMAFVETSAKNGCNVE  162 (213)
T ss_pred             EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhcccc---HHHHHHHHHhcCceEEEecccCCCcHH
Confidence            99999999999999999999987765534 45568999999998765432   222233445678889999999999999


Q ss_pred             HHHHHHHHHhhh
Q 030289          167 EGLDWLSSNVSA  178 (180)
Q Consensus       167 ~~~~~l~~~~~~  178 (180)
                      |.|..+.+.+..
T Consensus       163 EAF~mlaqeIf~  174 (213)
T KOG0091|consen  163 EAFDMLAQEIFQ  174 (213)
T ss_pred             HHHHHHHHHHHH
Confidence            999999988754

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.98  E-value=6.3e-31  Score=176.52  Aligned_cols=154  Identities=18%  Similarity=0.294  Sum_probs=122.0

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcC--C-ccccccccceeEE--EEEE---cCeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289           17 MRILMVGLDAAGKTTILYKLKLG--E-IVTTIPTIGFNVE--TVEY---KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLI   88 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~--~-~~~~~~t~~~~~~--~~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   88 (180)
                      +||+++|++|||||||++++..+  . ..++.+|.+..+.  .+..   ..+++.+|||||++.+..++..+++++|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            48999999999999999999864  3 4566678775543  2322   4589999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHH-HhHhCCCccCCcceEEEEeeccCCCChHH
Q 030289           89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEV-TDKLGLHSLRQRRWYIQAACATSGQGLYE  167 (180)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  167 (180)
                      +|||++++++++.+..|+..+....  .+.|+++|+||+|+.+....... ...+.    ...+.+++++||+++.|+++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~  154 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFA----QANQLKFFKTSALRGVGYEE  154 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHH----HHcCCeEEEEeCCCCCChHH
Confidence            9999999999999999988876542  56899999999999664332221 11111    12345799999999999999


Q ss_pred             HHHHHHHHh
Q 030289          168 GLDWLSSNV  176 (180)
Q Consensus       168 ~~~~l~~~~  176 (180)
                      +|+.+.+.+
T Consensus       155 l~~~l~~~~  163 (164)
T cd04101         155 PFESLARAF  163 (164)
T ss_pred             HHHHHHHHh
Confidence            999999875

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.98  E-value=2.8e-31  Score=181.92  Aligned_cols=160  Identities=16%  Similarity=0.216  Sum_probs=121.1

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE-EEEE---cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE-TVEY---KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV   91 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~-~~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (180)
                      +||+++|++|+|||||+++|.++.+ ..+.+|++..+. .+..   ..+.+.+|||||++++...+..+++++|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   80 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY   80 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence            4899999999999999999998884 455667665443 2333   3568999999999999999999999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCCCCHh-HHHhHhCCCccCCcce-EEEEeeccCCCChHHH
Q 030289           92 DSNDRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNAMSVS-EVTDKLGLHSLRQRRW-YIQAACATSGQGLYEG  168 (180)
Q Consensus        92 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~  168 (180)
                      |++++++++.+. .|+..+...  .++.|+++|+||+|+....... .+........+...++ ++++|||++|.|++++
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~  158 (187)
T cd04132          81 AVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV  158 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence            999999999986 476665432  3578999999999986532100 0000111111222334 7999999999999999


Q ss_pred             HHHHHHHhhh
Q 030289          169 LDWLSSNVSA  178 (180)
Q Consensus       169 ~~~l~~~~~~  178 (180)
                      |..+.+.+..
T Consensus       159 f~~l~~~~~~  168 (187)
T cd04132         159 FDTAIEEALK  168 (187)
T ss_pred             HHHHHHHHHh
Confidence            9999988765

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01861 Rab6 Rab6 subfamily

Probab=99.98  E-value=7.9e-31  Score=175.53  Aligned_cols=154  Identities=20%  Similarity=0.385  Sum_probs=121.6

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeE--EEEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV--ETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV   91 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (180)
                      +||+++|++|||||||+++|.+..+ ..+.++.+..+  ..+..++  +.+.+||+||+..+...+..+++.+|++++||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            5899999999999999999998873 34456665443  3444433  67999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChHHHH
Q 030289           92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGL  169 (180)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  169 (180)
                      |++++++++.+..|+..+.... ..+.|+++++||+|+.+...  .++....     ....+++++++|++++.|+++++
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~~l~  154 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDER-GNDVIIVLVGNKTDLSDKRQVSTEEGEKK-----AKELNAMFIETSAKAGHNVKELF  154 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEEChhccccCccCHHHHHHH-----HHHhCCEEEEEeCCCCCCHHHHH
Confidence            9999999999999999876543 23699999999999954322  2222211     12234689999999999999999


Q ss_pred             HHHHHHh
Q 030289          170 DWLSSNV  176 (180)
Q Consensus       170 ~~l~~~~  176 (180)
                      +++.+.+
T Consensus       155 ~~i~~~l  161 (161)
T cd01861         155 RKIASAL  161 (161)
T ss_pred             HHHHHhC
Confidence            9998753

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.98  E-value=2.2e-30  Score=183.62  Aligned_cols=156  Identities=21%  Similarity=0.247  Sum_probs=124.8

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCCcc-ccccccc-eeEEEEEEc--CeEEEEEEcCCCCCChhhHHhhccccCEEEEEEE
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG-FNVETVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVD   92 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~-~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   92 (180)
                      +||+++|++|||||||+++|+.+.+. .+.+|++ .....+.+.  .+.+.+|||+|++.+...+..++.++|++++|||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd   80 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS   80 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence            58999999999999999999988754 5567775 333444544  4788999999999998888888999999999999


Q ss_pred             CCChhhHHHHHHHHHHHhccc--------ccCCCeEEEEEecCCCCC--CCCHhHHHhHhCCCccCCcceEEEEeeccCC
Q 030289           93 SNDRERIGEAKDELHRMLSED--------ELREAVLLVFANKQDLPN--AMSVSEVTDKLGLHSLRQRRWYIQAACATSG  162 (180)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~iiiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  162 (180)
                      ++++++++.+..|+..+....        ...+.|+++|+||+|+..  +...+++.+..+.    ...+.++++||++|
T Consensus        81 v~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~----~~~~~~~evSAktg  156 (247)
T cd04143          81 LDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGG----DENCAYFEVSAKKN  156 (247)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHh----cCCCEEEEEeCCCC
Confidence            999999999999988886431        235789999999999974  3344444443332    12457999999999


Q ss_pred             CChHHHHHHHHHHh
Q 030289          163 QGLYEGLDWLSSNV  176 (180)
Q Consensus       163 ~~i~~~~~~l~~~~  176 (180)
                      .|++++|+++.+..
T Consensus       157 ~gI~elf~~L~~~~  170 (247)
T cd04143         157 SNLDEMFRALFSLA  170 (247)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999999865

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd01892 Miro2 Miro2 subfamily

Probab=99.98  E-value=1.4e-30  Score=175.58  Aligned_cols=156  Identities=21%  Similarity=0.193  Sum_probs=124.5

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCc--cccccccceeE--EEEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIPTIGFNV--ETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGL   87 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~--~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~   87 (180)
                      ++.+||+++|++|||||||++++.++.+  .++.||++..+  ..+...+  ..+.+||++|++.+...+..+++++|++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            6789999999999999999999998885  46778887544  3444444  6789999999999988899999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC-----HhHHHhHhCCCccCCcceEEEEeeccCC
Q 030289           88 IFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS-----VSEVTDKLGLHSLRQRRWYIQAACATSG  162 (180)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  162 (180)
                      ++|+|++++.+++.+..|+..+..   ..++|+++|+||+|+.+...     .+++...++..       .++++||+++
T Consensus        82 llv~d~~~~~s~~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-------~~~~~Sa~~~  151 (169)
T cd01892          82 CLVYDSSDPKSFSYCAEVYKKYFM---LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLP-------PPLHFSSKLG  151 (169)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHhcc---CCCCeEEEEEEcccccccccccccCHHHHHHHcCCC-------CCEEEEeccC
Confidence            999999999999988888876532   24789999999999865321     22333222211       3589999999


Q ss_pred             CChHHHHHHHHHHhhhc
Q 030289          163 QGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       163 ~~i~~~~~~l~~~~~~~  179 (180)
                      .|++++|+.+.+.+...
T Consensus       152 ~~v~~lf~~l~~~~~~~  168 (169)
T cd01892         152 DSSNELFTKLATAAQYP  168 (169)
T ss_pred             ccHHHHHHHHHHHhhCC
Confidence            99999999999987653

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.97  E-value=1.1e-30  Score=175.20  Aligned_cols=157  Identities=20%  Similarity=0.307  Sum_probs=124.6

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCCcc-ccccccceeEEE-EEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEE
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET-VEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVD   92 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   92 (180)
                      +||+++|++|||||||++++....+. .+.++.+..+.. ...  ..+.+.+||+||+..+...+..+++.++++++|+|
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence            69999999999999999999987743 444555433322 222  45789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC--CCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHH
Q 030289           93 SNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA--MSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLD  170 (180)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  170 (180)
                      +++++++.....|+..+.......+.|+++|+||+|+...  ...++....     ....+.+++++||++|.|++++|+
T Consensus        81 ~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~l~~  155 (164)
T cd04139          81 ITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANL-----ARQWGVPYVETSAKTRQNVEKAFY  155 (164)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHH-----HHHhCCeEEEeeCCCCCCHHHHHH
Confidence            9999999999999998887654568999999999999762  222221111     112345899999999999999999


Q ss_pred             HHHHHhhh
Q 030289          171 WLSSNVSA  178 (180)
Q Consensus       171 ~l~~~~~~  178 (180)
                      ++.+.+.+
T Consensus       156 ~l~~~~~~  163 (164)
T cd04139         156 DLVREIRQ  163 (164)
T ss_pred             HHHHHHHh
Confidence            99988765

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04142 RRP22 RRP22 subfamily

Probab=99.97  E-value=6.8e-31  Score=181.02  Aligned_cols=160  Identities=18%  Similarity=0.164  Sum_probs=119.4

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeE--EEEEEcC--eEEEEEEcCCCCCChh--------hHHhhccc
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV--ETVEYKN--VSFTVWDVGGQDKIRP--------LWRHYFQN   83 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~--------~~~~~~~~   83 (180)
                      +||+++|.+|||||||++++.++.+ ..+.||++...  ..+..++  +.+.+|||||...+..        ....++++
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            5899999999999999999998874 44667776432  3344444  6788999999765421        13345789


Q ss_pred             cCEEEEEEECCChhhHHHHHHHHHHHhccc--ccCCCeEEEEEecCCCCCCCCHh-HHHhHhCCCccCCcceEEEEeecc
Q 030289           84 THGLIFVVDSNDRERIGEAKDELHRMLSED--ELREAVLLVFANKQDLPNAMSVS-EVTDKLGLHSLRQRRWYIQAACAT  160 (180)
Q Consensus        84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~iiiv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~  160 (180)
                      +|++++|||++++++++.+..|+..+....  ...++|+++|+||+|+....... +....+.   .+..+++|++|||+
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~e~Sak  157 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLV---RKSWKCGYLECSAK  157 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHH---HHhcCCcEEEecCC
Confidence            999999999999999999999988876543  24679999999999996532211 1111111   11235689999999


Q ss_pred             CCCChHHHHHHHHHHhhhc
Q 030289          161 SGQGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       161 ~~~~i~~~~~~l~~~~~~~  179 (180)
                      +|.||+++|+.+++.+..+
T Consensus       158 ~g~~v~~lf~~i~~~~~~~  176 (198)
T cd04142         158 YNWHILLLFKELLISATTR  176 (198)
T ss_pred             CCCCHHHHHHHHHHHhhcc
Confidence            9999999999999887654

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.97  E-value=2.2e-31  Score=180.42  Aligned_cols=158  Identities=19%  Similarity=0.235  Sum_probs=119.6

Q ss_pred             EEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE-EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECC
Q 030289           19 ILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE-TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSN   94 (180)
Q Consensus        19 i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~   94 (180)
                      |+|+|++|||||||++++..+.+ ..+.+|....+. .+..  ..+.+.+|||||++.+...+..+++++|++++|||++
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~   80 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD   80 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence            58999999999999999998884 445566554332 3333  3467999999999999999999999999999999999


Q ss_pred             ChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCCCC-HhHHH--------hHhCCCccCCcce-EEEEeeccCCC
Q 030289           95 DRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNAMS-VSEVT--------DKLGLHSLRQRRW-YIQAACATSGQ  163 (180)
Q Consensus        95 ~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~-~~~~~--------~~~~~~~~~~~~~-~~~~~Sa~~~~  163 (180)
                      ++++++.+. .|+..+...  .++.|+++|+||+|+.++.. ..++.        .......++..+. ++++|||++|.
T Consensus        81 ~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  158 (174)
T smart00174       81 SPASFENVKEKWYPEVKHF--CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE  158 (174)
T ss_pred             CHHHHHHHHHHHHHHHHhh--CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            999999986 577776543  35899999999999875321 11111        0111112223343 79999999999


Q ss_pred             ChHHHHHHHHHHhhh
Q 030289          164 GLYEGLDWLSSNVSA  178 (180)
Q Consensus       164 ~i~~~~~~l~~~~~~  178 (180)
                      |++++|+.+++.+.+
T Consensus       159 ~v~~lf~~l~~~~~~  173 (174)
T smart00174      159 GVREVFEEAIRAALN  173 (174)
T ss_pred             CHHHHHHHHHHHhcC
Confidence            999999999988754

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>PLN03108 Rab family protein; Provisional

Probab=99.97  E-value=1.5e-30  Score=181.17  Aligned_cols=159  Identities=19%  Similarity=0.321  Sum_probs=126.6

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE--EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE--TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLI   88 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   88 (180)
                      ...+||+++|++|+|||||+++|....+ ..+.+|++..+.  .+..  ..+.+.+|||+|++.+...+..+++++|+++
T Consensus         4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v   83 (210)
T PLN03108          4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            3569999999999999999999998873 345567775543  3444  3467899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC--CHhHHHhHhCCCccCCcceEEEEeeccCCCChH
Q 030289           89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM--SVSEVTDKLGLHSLRQRRWYIQAACATSGQGLY  166 (180)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  166 (180)
                      +|||++++++++.+..|+..+.... .++.|+++|+||+|+.+..  ..++....     ++..+++++++||+++.|++
T Consensus        84 lv~D~~~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~~~~v~  157 (210)
T PLN03108         84 LVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQF-----AKEHGLIFMEASAKTAQNVE  157 (210)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccCCCHHHHHHH-----HHHcCCEEEEEeCCCCCCHH
Confidence            9999999999999999988765432 3578999999999987633  22222222     22345689999999999999


Q ss_pred             HHHHHHHHHhhh
Q 030289          167 EGLDWLSSNVSA  178 (180)
Q Consensus       167 ~~~~~l~~~~~~  178 (180)
                      ++|.++++.+.+
T Consensus       158 e~f~~l~~~~~~  169 (210)
T PLN03108        158 EAFIKTAAKIYK  169 (210)
T ss_pred             HHHHHHHHHHHH
Confidence            999999988765

>cd01863 Rab18 Rab18 subfamily

Probab=99.97  E-value=4.3e-30  Score=171.98  Aligned_cols=155  Identities=23%  Similarity=0.420  Sum_probs=123.9

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE--EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE--TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV   91 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (180)
                      +||+++|++|||||||++++.+..+ ..+.+|.+..+.  .+..  ..+.+.+||+||++.+...+..+++++|++++|+
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            6899999999999999999998874 345666665443  3333  3478999999999999888899999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC-CHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHH
Q 030289           92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM-SVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLD  170 (180)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  170 (180)
                      |++++.+++.+..|+..+.......+.|+++|+||+|+.... ..++....     ....+++++++|+++|.|++++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~~~~  155 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKF-----ARKHNMLFIETSAKTRDGVQQAFE  155 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHH-----HHHcCCEEEEEecCCCCCHHHHHH
Confidence            999999999999998877665555689999999999997432 23222221     122456899999999999999999


Q ss_pred             HHHHHh
Q 030289          171 WLSSNV  176 (180)
Q Consensus       171 ~l~~~~  176 (180)
                      ++.+.+
T Consensus       156 ~~~~~~  161 (161)
T cd01863         156 ELVEKI  161 (161)
T ss_pred             HHHHhC
Confidence            998753

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd01862 Rab7 Rab7 subfamily

Probab=99.97  E-value=5.1e-30  Score=173.28  Aligned_cols=158  Identities=16%  Similarity=0.271  Sum_probs=122.3

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeE--EEEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV--ETVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV   91 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (180)
                      +||+++|++|||||||++++.+.. ...+.+|.+..+  ..+..  ..+.+.+||+||++.+...+..+++++|+++++|
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            589999999999999999999887 334445665443  23334  3467889999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhcccc---cCCCeEEEEEecCCCCCCC--CHhHHHhHhCCCccCCc-ceEEEEeeccCCCCh
Q 030289           92 DSNDRERIGEAKDELHRMLSEDE---LREAVLLVFANKQDLPNAM--SVSEVTDKLGLHSLRQR-RWYIQAACATSGQGL  165 (180)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~---~~~~~iiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i  165 (180)
                      |++++++++....|...+.....   ..++|+++|+||+|+..+.  ..++......     .. ..+++++|+++|.|+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv  155 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQ-----SNGNIPYFETSAKEAINV  155 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHH-----HcCCceEEEEECCCCCCH
Confidence            99999999888888776654322   3479999999999997422  2333222211     12 258999999999999


Q ss_pred             HHHHHHHHHHhhhc
Q 030289          166 YEGLDWLSSNVSAK  179 (180)
Q Consensus       166 ~~~~~~l~~~~~~~  179 (180)
                      +++++++.+.+.++
T Consensus       156 ~~l~~~i~~~~~~~  169 (172)
T cd01862         156 EQAFETIARKALEQ  169 (172)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999887654

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.97  E-value=2.9e-31  Score=182.27  Aligned_cols=156  Identities=15%  Similarity=0.179  Sum_probs=115.2

Q ss_pred             ccEEEEEcCCCCChHHHHH-HhhcCC------ccccccccce-e-EE-----------EEEEcCeEEEEEEcCCCCCChh
Q 030289           16 EMRILMVGLDAAGKTTILY-KLKLGE------IVTTIPTIGF-N-VE-----------TVEYKNVSFTVWDVGGQDKIRP   75 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~-~l~~~~------~~~~~~t~~~-~-~~-----------~~~~~~~~~~i~D~~G~~~~~~   75 (180)
                      .+||+++|+.|||||||+. ++.++.      ...+.||++. . +.           .+....+.+.+|||+|++.  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            5799999999999999996 555432      2345678752 1 11           2233568899999999875  3


Q ss_pred             hHHhhccccCEEEEEEECCChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCCCC----------------HhHH
Q 030289           76 LWRHYFQNTHGLIFVVDSNDRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNAMS----------------VSEV  138 (180)
Q Consensus        76 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~----------------~~~~  138 (180)
                      ....+++++|++++|||++++.+++.+. .|+..+...  .++.|+++|+||+|+.....                ...+
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V  157 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHF--CPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL  157 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence            4567899999999999999999999997 587776443  25789999999999864210                0112


Q ss_pred             HhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHH
Q 030289          139 TDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSN  175 (180)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  175 (180)
                      ....+...++..+++|++|||++|.||+++|+.++++
T Consensus       158 ~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         158 PPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             CHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            2222333445567799999999999999999999875

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.8e-31  Score=168.41  Aligned_cols=158  Identities=22%  Similarity=0.362  Sum_probs=130.1

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeE--EEEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV--ETVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV   90 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (180)
                      -|||+++|..|+|||+|+.+|..+- ++...+|+++.+  .++.+  ++++++||||+|++++++.+..|++.+|+++++
T Consensus         7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv   86 (213)
T KOG0095|consen    7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (213)
T ss_pred             eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence            4899999999999999999999887 444557877554  44444  778999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHH
Q 030289           91 VDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLD  170 (180)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  170 (180)
                      ||++-..+|+.+..|+.++-... ..++--++|+||.|+.+.+++   ....+..+...+...|.++||++-+|++.+|.
T Consensus        87 ydiscqpsfdclpewlreie~ya-n~kvlkilvgnk~d~~drrev---p~qigeefs~~qdmyfletsakea~nve~lf~  162 (213)
T KOG0095|consen   87 YDISCQPSFDCLPEWLREIEQYA-NNKVLKILVGNKIDLADRREV---PQQIGEEFSEAQDMYFLETSAKEADNVEKLFL  162 (213)
T ss_pred             EecccCcchhhhHHHHHHHHHHh-hcceEEEeeccccchhhhhhh---hHHHHHHHHHhhhhhhhhhcccchhhHHHHHH
Confidence            99999999999999999886543 356778999999999876432   33334444444566899999999999999999


Q ss_pred             HHHHHhh
Q 030289          171 WLSSNVS  177 (180)
Q Consensus       171 ~l~~~~~  177 (180)
                      .+.-.+.
T Consensus       163 ~~a~rli  169 (213)
T KOG0095|consen  163 DLACRLI  169 (213)
T ss_pred             HHHHHHH
Confidence            9877654

>cd04123 Rab21 Rab21 subfamily

Probab=99.97  E-value=4.5e-30  Score=171.82  Aligned_cols=154  Identities=21%  Similarity=0.343  Sum_probs=120.4

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCCcc-cccccccee--EEEEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV   91 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~--~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (180)
                      +||+++|++|+|||||+++|+.+... .+.++....  ...+..  ....+.+||+||++.+...++.+++++|++++|+
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            68999999999999999999988743 333444332  233433  3467999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChHHHH
Q 030289           92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGL  169 (180)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  169 (180)
                      |++++++++.+..|+..+..... .++|+++++||+|+.....  .+++...     ....+.+++++|++++.|+++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~gi~~~~  154 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEY-----AKSVGAKHFETSAKTGKGIEELF  154 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHH-----HHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999887765433 3789999999999875332  2222221     12235678999999999999999


Q ss_pred             HHHHHHh
Q 030289          170 DWLSSNV  176 (180)
Q Consensus       170 ~~l~~~~  176 (180)
                      +++.+.+
T Consensus       155 ~~l~~~~  161 (162)
T cd04123         155 LSLAKRM  161 (162)
T ss_pred             HHHHHHh
Confidence            9998875

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.97  E-value=1.6e-30  Score=174.82  Aligned_cols=155  Identities=19%  Similarity=0.242  Sum_probs=116.6

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCCc-ccccccccee-EEEEEE--cCeEEEEEEcCCCCCC-hhhHHhhccccCEEEEEEE
Q 030289           18 RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFN-VETVEY--KNVSFTVWDVGGQDKI-RPLWRHYFQNTHGLIFVVD   92 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~-~~~~~~--~~~~~~i~D~~G~~~~-~~~~~~~~~~~~~~i~v~d   92 (180)
                      ||+++|++|||||||+++++.+.+ ..+.+|.... ...+..  ..+.+.+||+||+..+ ......+++.+|++++|||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d   80 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS   80 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence            689999999999999999998764 3445555422 223333  4567899999998853 4457778999999999999


Q ss_pred             CCChhhHHHHHHHHHHHhcccc-cCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCC-CChHHH
Q 030289           93 SNDRERIGEAKDELHRMLSEDE-LREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSG-QGLYEG  168 (180)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~~i~~~  168 (180)
                      ++++++++.+..|+..+..... ..+.|+++|+||+|+.+...  .++.. .+    .+..+.+|+++||+++ .|++++
T Consensus        81 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~-~~----~~~~~~~~~e~Sa~~~~~~v~~~  155 (165)
T cd04146          81 ITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGE-KL----ASELGCLFFEVSAAEDYDGVHSV  155 (165)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHH-HH----HHHcCCEEEEeCCCCCchhHHHH
Confidence            9999999999988877765432 45799999999999865332  22211 11    1223468999999999 499999


Q ss_pred             HHHHHHHhh
Q 030289          169 LDWLSSNVS  177 (180)
Q Consensus       169 ~~~l~~~~~  177 (180)
                      |..+++.+.
T Consensus       156 f~~l~~~~~  164 (165)
T cd04146         156 FHELCREVR  164 (165)
T ss_pred             HHHHHHHHh
Confidence            999998765

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04148 RGK RGK subfamily

Probab=99.97  E-value=4.7e-30  Score=179.76  Aligned_cols=155  Identities=17%  Similarity=0.170  Sum_probs=119.7

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCCc--cccccccc--eeEEEEEE--cCeEEEEEEcCCCCCChhhHHhhcc-ccCEEEE
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGEI--VTTIPTIG--FNVETVEY--KNVSFTVWDVGGQDKIRPLWRHYFQ-NTHGLIF   89 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~~--~~~~~t~~--~~~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~-~~~~~i~   89 (180)
                      +||+++|++|||||||+++|..+.+  ..+.++.+  ....++.+  ....+.+||+||++  ......++. ++|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence            6899999999999999999987775  45556653  44444554  55789999999998  334455666 8999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCH--hHHHhHhCCCccCCcceEEEEeeccCCCChHH
Q 030289           90 VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSV--SEVTDKLGLHSLRQRRWYIQAACATSGQGLYE  167 (180)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  167 (180)
                      |||++++.+++....|+..+.......++|+++|+||+|+.+....  ++.. .+    +...+++++++||+++.||++
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~-~~----a~~~~~~~~e~SA~~~~gv~~  153 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGR-AC----AVVFDCKFIETSAGLQHNVDE  153 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHH-HH----HHHcCCeEEEecCCCCCCHHH
Confidence            9999999999999999888766543467999999999998664322  2111 11    223356799999999999999


Q ss_pred             HHHHHHHHhhh
Q 030289          168 GLDWLSSNVSA  178 (180)
Q Consensus       168 ~~~~l~~~~~~  178 (180)
                      +|+++++.+..
T Consensus       154 l~~~l~~~~~~  164 (221)
T cd04148         154 LLEGIVRQIRL  164 (221)
T ss_pred             HHHHHHHHHHh
Confidence            99999998753

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04135 Tc10 TC10 subfamily

Probab=99.97  E-value=1.6e-30  Score=176.14  Aligned_cols=158  Identities=15%  Similarity=0.157  Sum_probs=117.6

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCCcc-ccccccceeE-EEEEEc--CeEEEEEEcCCCCCChhhHHhhccccCEEEEEEE
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV-ETVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVD   92 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   92 (180)
                      +||+++|++|+|||||++++..+.+. .+.+|....+ ..+...  .+.+.+|||||++.+...+..+++++|++++|||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~   80 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS   80 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence            58999999999999999999988844 4456654222 234443  4568899999999999999999999999999999


Q ss_pred             CCChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHH---------hHhCCCccCCcc-eEEEEeeccC
Q 030289           93 SNDRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVT---------DKLGLHSLRQRR-WYIQAACATS  161 (180)
Q Consensus        93 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~Sa~~  161 (180)
                      ++++++++.+. .|+..+...  .++.|+++|+||+|+.+........         ...+...++..+ .++++|||++
T Consensus        81 ~~~~~s~~~~~~~~~~~l~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  158 (174)
T cd04135          81 VVNPASFQNVKEEWVPELKEY--APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT  158 (174)
T ss_pred             CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence            99999999886 465555433  4689999999999986532211100         001111112233 3799999999


Q ss_pred             CCChHHHHHHHHHHh
Q 030289          162 GQGLYEGLDWLSSNV  176 (180)
Q Consensus       162 ~~~i~~~~~~l~~~~  176 (180)
                      |.|++++|+.+++.+
T Consensus       159 ~~gi~~~f~~~~~~~  173 (174)
T cd04135         159 QKGLKTVFDEAILAI  173 (174)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999999875

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.97  E-value=1.9e-30  Score=175.67  Aligned_cols=156  Identities=17%  Similarity=0.174  Sum_probs=115.1

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCCc-cccccccce-eEEEEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEE
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGF-NVETVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVD   92 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~-~~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   92 (180)
                      +||+++|++|+|||||++++..+.+ .++.+|..- ....+..  ..+.+.+||+||++++...+..+++++|++++|||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d   80 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS   80 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence            5899999999999999999988774 345555431 1123333  34688999999999999999999999999999999


Q ss_pred             CCChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCCCCH---------hHHHhHhCCCccCCcce-EEEEeeccC
Q 030289           93 SNDRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNAMSV---------SEVTDKLGLHSLRQRRW-YIQAACATS  161 (180)
Q Consensus        93 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  161 (180)
                      ++++++++.+. .|+..+...  .++.|+++++||+|+.+....         ..+........++..+. .|++|||++
T Consensus        81 ~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~  158 (173)
T cd04130          81 VVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT  158 (173)
T ss_pred             CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence            99999999885 577666533  357899999999998643210         00000111111223344 899999999


Q ss_pred             CCChHHHHHHHHH
Q 030289          162 GQGLYEGLDWLSS  174 (180)
Q Consensus       162 ~~~i~~~~~~l~~  174 (180)
                      |.|++++|+.++-
T Consensus       159 ~~~v~~lf~~~~~  171 (173)
T cd04130         159 QKNLKEVFDTAIL  171 (173)
T ss_pred             CCCHHHHHHHHHh
Confidence            9999999998764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd01893 Miro1 Miro1 subfamily

Probab=99.97  E-value=5.2e-30  Score=172.45  Aligned_cols=158  Identities=16%  Similarity=0.178  Sum_probs=116.1

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCCccccccccceeE-E--EEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEEC
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV-E--TVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDS   93 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~-~--~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   93 (180)
                      .||+++|++|||||||+++|..+.+....++..... .  .+....+++.+|||||++.+...+..+++.+|++++|||+
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~   80 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence            489999999999999999999888544444332221 1  2223567899999999998888888888999999999999


Q ss_pred             CChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCCCCHh---HHHhHhCCCccCCcceEEEEeeccCCCChHHHH
Q 030289           94 NDRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNAMSVS---EVTDKLGLHSLRQRRWYIQAACATSGQGLYEGL  169 (180)
Q Consensus        94 ~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  169 (180)
                      +++++++.+. .|+..+... . .+.|+++|+||+|+.+.....   +...... .... ...++++|||++|.|++++|
T Consensus        81 ~~~~s~~~~~~~~~~~i~~~-~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~-~~~~~~e~Sa~~~~~v~~lf  156 (166)
T cd01893          81 DRPSTLERIRTKWLPLIRRL-G-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIM-NEFR-EIETCVECSAKTLINVSEVF  156 (166)
T ss_pred             CCHHHHHHHHHHHHHHHHHh-C-CCCCEEEEEEchhcccccchhHHHHHHHHHH-HHHh-cccEEEEeccccccCHHHHH
Confidence            9999999986 455555332 2 478999999999997654321   1111100 0000 01279999999999999999


Q ss_pred             HHHHHHhhh
Q 030289          170 DWLSSNVSA  178 (180)
Q Consensus       170 ~~l~~~~~~  178 (180)
                      +.+.+.+..
T Consensus       157 ~~~~~~~~~  165 (166)
T cd01893         157 YYAQKAVLH  165 (166)
T ss_pred             HHHHHHhcC
Confidence            999988754

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.97  E-value=2.8e-29  Score=173.36  Aligned_cols=156  Identities=15%  Similarity=0.221  Sum_probs=122.5

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCCccc-cccccc-eeEEEEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEEEEEEEC
Q 030289           18 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG-FNVETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDS   93 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   93 (180)
                      ||+++|++|||||||+++|+.+.+.. +.+|.. .....+...+  +.+.+||+||+..+..++..++.++|++++|||+
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~   80 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV   80 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence            68999999999999999999887443 445543 3334455544  6889999999999998889999999999999999


Q ss_pred             CChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC-CC--HhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHH
Q 030289           94 NDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA-MS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLD  170 (180)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  170 (180)
                      +++++++.+..|+..+.......++|+++|+||+|+.+. ..  .++..+...    ...+.+++++||++|.|++++|+
T Consensus        81 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~g~gv~~l~~  156 (198)
T cd04147          81 DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVE----LDWNCGFVETSAKDNENVLEVFK  156 (198)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHH----hhcCCcEEEecCCCCCCHHHHHH
Confidence            999999999999888876654467999999999998652 21  112111111    12235789999999999999999


Q ss_pred             HHHHHhh
Q 030289          171 WLSSNVS  177 (180)
Q Consensus       171 ~l~~~~~  177 (180)
                      ++.+.+.
T Consensus       157 ~l~~~~~  163 (198)
T cd04147         157 ELLRQAN  163 (198)
T ss_pred             HHHHHhh
Confidence            9998764

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.5e-31  Score=170.40  Aligned_cols=160  Identities=20%  Similarity=0.380  Sum_probs=132.3

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCCcc-ccccccceeEEEEEE-------------cCeEEEEEEcCCCCCChhhHHhhcc
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY-------------KNVSFTVWDVGGQDKIRPLWRHYFQ   82 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~~~~~~~-------------~~~~~~i~D~~G~~~~~~~~~~~~~   82 (180)
                      +|.+.+|++|+||||++.+...+++. ....|+++++....+             ..+.+++|||+|++++++++-.+++
T Consensus        10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfR   89 (219)
T KOG0081|consen   10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFR   89 (219)
T ss_pred             HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHH
Confidence            56788999999999999999988844 445688876654333             2368999999999999999999999


Q ss_pred             ccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCC
Q 030289           83 NTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSG  162 (180)
Q Consensus        83 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  162 (180)
                      ++=+++++||++++.+|-....|+.++..+.--.+..+++++||+|+.+.+.+.+   ......+.++++|||++||-+|
T Consensus        90 DAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~---~qa~~La~kyglPYfETSA~tg  166 (219)
T KOG0081|consen   90 DAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSE---DQAAALADKYGLPYFETSACTG  166 (219)
T ss_pred             hhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhH---HHHHHHHHHhCCCeeeeccccC
Confidence            9999999999999999999999999998777666788999999999987654332   2222344667889999999999


Q ss_pred             CChHHHHHHHHHHhhhc
Q 030289          163 QGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       163 ~~i~~~~~~l~~~~~~~  179 (180)
                      .||++..+.+.+.+.++
T Consensus       167 ~Nv~kave~LldlvM~R  183 (219)
T KOG0081|consen  167 TNVEKAVELLLDLVMKR  183 (219)
T ss_pred             cCHHHHHHHHHHHHHHH
Confidence            99999999888876543

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=5.6e-30  Score=160.49  Aligned_cols=173  Identities=55%  Similarity=0.926  Sum_probs=159.4

Q ss_pred             Hhhhccc-CccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCE
Q 030289            8 LKMLFAR-KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHG   86 (180)
Q Consensus         8 ~~~~~~~-~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   86 (180)
                      ++..+.. +..+|.++|.-|+||+|+..++.-++..+..||++++..++.+++.++++||..|+...+..|+.|+.+.|+
T Consensus         9 f~~L~g~e~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~a   88 (182)
T KOG0072|consen    9 FKALQGPEREMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDA   88 (182)
T ss_pred             HHHhcCCccceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCccccccccccceeeEccCcccccHHHHHHhcccce
Confidence            3444443 899999999999999999999998898899999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChH
Q 030289           87 LIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLY  166 (180)
Q Consensus        87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  166 (180)
                      +|||+|.+|.+.+......+..++...+.++..+++++||.|........+....++++.++++-+.+|++||.+|+|++
T Consensus        89 vIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld  168 (182)
T KOG0072|consen   89 VIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLD  168 (182)
T ss_pred             EEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCc
Confidence            99999999999998888888888887777888899999999998888888899999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcC
Q 030289          167 EGLDWLSSNVSAKG  180 (180)
Q Consensus       167 ~~~~~l~~~~~~~~  180 (180)
                      +.++|+.+.+.+++
T Consensus       169 ~~~DWL~~~l~~~~  182 (182)
T KOG0072|consen  169 PAMDWLQRPLKSRQ  182 (182)
T ss_pred             HHHHHHHHHHhccC
Confidence            99999999998764

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.97  E-value=4.2e-29  Score=169.37  Aligned_cols=159  Identities=18%  Similarity=0.285  Sum_probs=117.9

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCCcc-ccccccceeE-EEEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV-ETVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV   91 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~~-~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (180)
                      +.||+++|++|||||||++++..+.+. .+.||.+..+ ..+..  ..+.+.+|||||++.+...+..++.++|++++||
T Consensus         1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            468999999999999999999988744 4567766443 33444  4467899999999999888888899999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCCCCHh-HHHhH--------hCCCccCCcc-eEEEEeecc
Q 030289           92 DSNDRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNAMSVS-EVTDK--------LGLHSLRQRR-WYIQAACAT  160 (180)
Q Consensus        92 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~-~~~~~--------~~~~~~~~~~-~~~~~~Sa~  160 (180)
                      |++++++++.+. .|+..+...  ..+.|+++|+||+|+.+..... ++...        .+.......+ .++++|||+
T Consensus        81 ~~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  158 (175)
T cd01870          81 SIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAK  158 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccc
Confidence            999999998886 466655432  3578999999999986532211 11100        0000111122 379999999


Q ss_pred             CCCChHHHHHHHHHHh
Q 030289          161 SGQGLYEGLDWLSSNV  176 (180)
Q Consensus       161 ~~~~i~~~~~~l~~~~  176 (180)
                      +|.|++++|.++.+.+
T Consensus       159 ~~~~v~~lf~~l~~~~  174 (175)
T cd01870         159 TKEGVREVFEMATRAA  174 (175)
T ss_pred             cCcCHHHHHHHHHHHh
Confidence            9999999999998764

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd00154 Rab Rab family

Probab=99.97  E-value=7.4e-29  Score=165.10  Aligned_cols=152  Identities=24%  Similarity=0.423  Sum_probs=122.0

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCCccc-cccccceeEEEEEE----cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV   91 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (180)
                      +||+++|++|||||||++++.+..... +.+|.+..+.....    ....+.+||+||+..+...+..+++++|++++|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            589999999999999999999888444 46777766554433    3578999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCC--CCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHH
Q 030289           92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP--NAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGL  169 (180)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  169 (180)
                      |++++++++.+..|+..+.... ....|+++++||+|+.  .....++..+...     ..+.+++++|++++.|+++++
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~  154 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYA-PENIPIILVGNKIDLEDQRQVSTEEAQQFAK-----ENGLLFFETSAKTGENVEELF  154 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccccccccccHHHHHHHHH-----HcCCeEEEEecCCCCCHHHHH
Confidence            9999999999999988876553 2578999999999996  2223333332211     245689999999999999999


Q ss_pred             HHHHH
Q 030289          170 DWLSS  174 (180)
Q Consensus       170 ~~l~~  174 (180)
                      +++.+
T Consensus       155 ~~i~~  159 (159)
T cd00154         155 QSLAE  159 (159)
T ss_pred             HHHhC
Confidence            99863

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.97  E-value=5e-29  Score=169.75  Aligned_cols=157  Identities=20%  Similarity=0.297  Sum_probs=124.8

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCCcc-cccccccee-EEEEEEc--CeEEEEEEcCCCCCChhhHHhhccccCEEEEEEE
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN-VETVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVD   92 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~-~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   92 (180)
                      .||+++|++|||||||++++....+. .+.||.... ...+...  ++.+.+||+||+.++...+..++..++++++|||
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   81 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS   81 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence            68999999999999999999988743 355665532 3344444  4567999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHH
Q 030289           93 SNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLD  170 (180)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  170 (180)
                      +++..+++.+..|+..+.+.....+.|+++|+||+|+.....  .++....     ....+.+++++|++++.|+++++.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gv~~l~~  156 (180)
T cd04137          82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKEL-----AESWGAAFLESSARENENVEEAFE  156 (180)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHH-----HHHcCCeEEEEeCCCCCCHHHHHH
Confidence            999999999999988888765556789999999999875322  2222111     112336899999999999999999


Q ss_pred             HHHHHhhh
Q 030289          171 WLSSNVSA  178 (180)
Q Consensus       171 ~l~~~~~~  178 (180)
                      ++.+.+..
T Consensus       157 ~l~~~~~~  164 (180)
T cd04137         157 LLIEEIEK  164 (180)
T ss_pred             HHHHHHHH
Confidence            99988764

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04114 Rab30 Rab30 subfamily

Probab=99.97  E-value=7.6e-29  Score=167.19  Aligned_cols=157  Identities=21%  Similarity=0.361  Sum_probs=121.4

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCCc-cccccccce--eEEEEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEEEE
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGF--NVETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGLIF   89 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~--~~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   89 (180)
                      ..+||+++|++|||||||++++..+.. ..+.+|++.  ....+...+  +.+.+||+||++.+...+..+++.+|++++
T Consensus         6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   85 (169)
T cd04114           6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL   85 (169)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence            458999999999999999999987663 344566653  333445544  678999999999999888999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHh-HHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289           90 VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVS-EVTDKLGLHSLRQRRWYIQAACATSGQGLYEG  168 (180)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (180)
                      |+|++++++++.+..|+..+... ...+.|+++|+||+|+.+..... +....+.    +....+++++|+++|.|++++
T Consensus        86 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~~l  160 (169)
T cd04114          86 TYDITCEESFRCLPEWLREIEQY-ANNKVITILVGNKIDLAERREVSQQRAEEFS----DAQDMYYLETSAKESDNVEKL  160 (169)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHHHH----HHcCCeEEEeeCCCCCCHHHH
Confidence            99999999999888888766433 23468999999999987543322 2222211    112357999999999999999


Q ss_pred             HHHHHHHh
Q 030289          169 LDWLSSNV  176 (180)
Q Consensus       169 ~~~l~~~~  176 (180)
                      |+++.+.+
T Consensus       161 ~~~i~~~~  168 (169)
T cd04114         161 FLDLACRL  168 (169)
T ss_pred             HHHHHHHh
Confidence            99999865

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd00157 Rho Rho (Ras homology) family

Probab=99.97  E-value=2.1e-29  Score=170.18  Aligned_cols=156  Identities=21%  Similarity=0.276  Sum_probs=115.1

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE-EEE--EcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEE
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE-TVE--YKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVD   92 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~-~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   92 (180)
                      +||+++|++|||||||+++|.++.. ..+.+|...... .+.  ...+.+.+||+||++.+......+++.+|++++|||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   80 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS   80 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence            6899999999999999999998884 444555442222 222  245689999999999988888888899999999999


Q ss_pred             CCChhhHHHHHH-HHHHHhcccccCCCeEEEEEecCCCCCCCCHhH--------HHhHhCCCccCCcce-EEEEeeccCC
Q 030289           93 SNDRERIGEAKD-ELHRMLSEDELREAVLLVFANKQDLPNAMSVSE--------VTDKLGLHSLRQRRW-YIQAACATSG  162 (180)
Q Consensus        93 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~--------~~~~~~~~~~~~~~~-~~~~~Sa~~~  162 (180)
                      ++++.++..... |+..+...  ..+.|+++|+||+|+........        +............+. +++++||++|
T Consensus        81 ~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~  158 (171)
T cd00157          81 VDSPSSFENVKTKWIPEIRHY--CPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ  158 (171)
T ss_pred             CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence            999988877764 55544433  24799999999999876543211        111111112222333 8999999999


Q ss_pred             CChHHHHHHHHH
Q 030289          163 QGLYEGLDWLSS  174 (180)
Q Consensus       163 ~~i~~~~~~l~~  174 (180)
                      .|+++++.++++
T Consensus       159 ~gi~~l~~~i~~  170 (171)
T cd00157         159 EGVKEVFEEAIR  170 (171)
T ss_pred             CCHHHHHHHHhh
Confidence            999999999876

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd00876 Ras Ras family

Probab=99.97  E-value=3.1e-29  Score=167.41  Aligned_cols=154  Identities=20%  Similarity=0.301  Sum_probs=120.9

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCC-ccccccccce-eEEEEEEc--CeEEEEEEcCCCCCChhhHHhhccccCEEEEEEEC
Q 030289           18 RILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGF-NVETVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDS   93 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~-~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   93 (180)
                      ||+++|++|||||||++++++.. ...+.++.+. ....+...  .+.+.+||+||+..+...+..+++++|++++|||+
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   80 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI   80 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence            68999999999999999999776 3444555552 22334444  57889999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHH
Q 030289           94 NDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDW  171 (180)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  171 (180)
                      ++++++.....|+..+.........|+++|+||+|+.....  .++....     ....+.+++++|++++.|+++++++
T Consensus        81 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~S~~~~~~i~~l~~~  155 (160)
T cd00876          81 TDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKAL-----AKEWGCPFIETSAKDNINIDEVFKL  155 (160)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHH-----HHHcCCcEEEeccCCCCCHHHHHHH
Confidence            99999999999988887664445799999999999876322  2222211     1222368999999999999999999


Q ss_pred             HHHHh
Q 030289          172 LSSNV  176 (180)
Q Consensus       172 l~~~~  176 (180)
                      |.+.+
T Consensus       156 l~~~i  160 (160)
T cd00876         156 LVREI  160 (160)
T ss_pred             HHhhC
Confidence            98753

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.96  E-value=3e-28  Score=170.31  Aligned_cols=161  Identities=21%  Similarity=0.348  Sum_probs=130.2

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEEEEE----cCeEEEEEEcCCCCCChhhHHhhccccCE
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWRHYFQNTHG   86 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   86 (180)
                      .+...+||+++|++|||||||++++..+. ...+.+|.+..+.....    +.+.+.+||++|++.+...+..++.++++
T Consensus         5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~   84 (215)
T PTZ00132          5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC   84 (215)
T ss_pred             cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence            35678999999999999999999888777 45677888877665443    56899999999999999899999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChH
Q 030289           87 LIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLY  166 (180)
Q Consensus        87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  166 (180)
                      +++|||++++.++..+..|+..+....  .++|+++++||+|+.+.....+...     .....++.++++|+++|.|++
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~e~Sa~~~~~v~  157 (215)
T PTZ00132         85 AIIMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKDRQVKARQIT-----FHRKKNLQYYDISAKSNYNFE  157 (215)
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCccccCCHHHHH-----HHHHcCCEEEEEeCCCCCCHH
Confidence            999999999999999999988876542  5689999999999865322111111     122345689999999999999


Q ss_pred             HHHHHHHHHhhhc
Q 030289          167 EGLDWLSSNVSAK  179 (180)
Q Consensus       167 ~~~~~l~~~~~~~  179 (180)
                      +.|.++++.+..+
T Consensus       158 ~~f~~ia~~l~~~  170 (215)
T PTZ00132        158 KPFLWLARRLTND  170 (215)
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999988654

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.96  E-value=6.4e-30  Score=162.85  Aligned_cols=164  Identities=20%  Similarity=0.305  Sum_probs=128.9

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhhcCCccccc-cccc--eeEEEEEE--cCeEEEEEEcCCCCCChhhHHhhccccCE
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHG   86 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~-~t~~--~~~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   86 (180)
                      -+.-+||++++|..-+|||||+-|++.+++.... .|.-  +....+++  ....+.||||+|+++|..+-+.||+++++
T Consensus         9 g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnG   88 (218)
T KOG0088|consen    9 GKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNG   88 (218)
T ss_pred             CCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCc
Confidence            3456899999999999999999999887744332 3333  22233333  44679999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChH
Q 030289           87 LIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLY  166 (180)
Q Consensus        87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  166 (180)
                      +++|||++|+++|+..+.|...+.... ...+.+++|+||+|+.+++.+.   .......++.-++.++++||+++.||.
T Consensus        89 alLVyDITDrdSFqKVKnWV~Elr~ml-Gnei~l~IVGNKiDLEeeR~Vt---~qeAe~YAesvGA~y~eTSAk~N~Gi~  164 (218)
T KOG0088|consen   89 ALLVYDITDRDSFQKVKNWVLELRTML-GNEIELLIVGNKIDLEEERQVT---RQEAEAYAESVGALYMETSAKDNVGIS  164 (218)
T ss_pred             eEEEEeccchHHHHHHHHHHHHHHHHh-CCeeEEEEecCcccHHHhhhhh---HHHHHHHHHhhchhheecccccccCHH
Confidence            999999999999999999999886543 3568899999999997754322   111223334556789999999999999


Q ss_pred             HHHHHHHHHhhhc
Q 030289          167 EGLDWLSSNVSAK  179 (180)
Q Consensus       167 ~~~~~l~~~~~~~  179 (180)
                      ++|..+...+.++
T Consensus       165 elFe~Lt~~MiE~  177 (218)
T KOG0088|consen  165 ELFESLTAKMIEH  177 (218)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998887654

>cd04129 Rho2 Rho2 subfamily

Probab=99.96  E-value=2.9e-28  Score=166.93  Aligned_cols=160  Identities=19%  Similarity=0.273  Sum_probs=116.1

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEE-EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE-TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV   91 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (180)
                      +.||+++|++|+|||||++++..+. ...+.+|....+. .+..  ....+.+||++|++.+......++.++|+++++|
T Consensus         1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~   80 (187)
T cd04129           1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF   80 (187)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence            4699999999999999999998666 3344455543322 3333  3467899999999988877777889999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCCCCHh-H------HHhHhCCCccCCcc-eEEEEeeccCC
Q 030289           92 DSNDRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNAMSVS-E------VTDKLGLHSLRQRR-WYIQAACATSG  162 (180)
Q Consensus        92 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~-~------~~~~~~~~~~~~~~-~~~~~~Sa~~~  162 (180)
                      |++++++++.+. .|+..+...  .++.|+++|+||+|+.+..... +      .........++..+ .++|+|||++|
T Consensus        81 ~i~~~~s~~~~~~~~~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~  158 (187)
T cd04129          81 AVDTPDSLENVRTKWIEEVRRY--CPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTG  158 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCC
Confidence            999999999987 577766543  2579999999999985421100 0      00000111112233 37999999999


Q ss_pred             CChHHHHHHHHHHhh
Q 030289          163 QGLYEGLDWLSSNVS  177 (180)
Q Consensus       163 ~~i~~~~~~l~~~~~  177 (180)
                      .|++++|+++.+.+.
T Consensus       159 ~~v~~~f~~l~~~~~  173 (187)
T cd04129         159 EGVDDVFEAATRAAL  173 (187)
T ss_pred             CCHHHHHHHHHHHHh
Confidence            999999999997764

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.96  E-value=1e-27  Score=165.00  Aligned_cols=147  Identities=22%  Similarity=0.286  Sum_probs=110.0

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEE--EEEE-------cCeEEEEEEcCCCCCChhhHHhhccccCE
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE--TVEY-------KNVSFTVWDVGGQDKIRPLWRHYFQNTHG   86 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~--~~~~-------~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   86 (180)
                      +||+++|++|||||||++++..+. ...+.+|++..+.  .+.+       ..+.+.+|||+|++.+..++..+++++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            589999999999999999999888 4456678885442  3333       34689999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhccc------------------ccCCCeEEEEEecCCCCCCCCHhHHHhHh-CCCcc
Q 030289           87 LIFVVDSNDRERIGEAKDELHRMLSED------------------ELREAVLLVFANKQDLPNAMSVSEVTDKL-GLHSL  147 (180)
Q Consensus        87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~iiiv~nK~D~~~~~~~~~~~~~~-~~~~~  147 (180)
                      +++|||++++++++.+..|+..+....                  ...++|+++|+||+|+.++.......... ....+
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia  160 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA  160 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence            999999999999999999999886531                  12468999999999997643221111110 11112


Q ss_pred             CCcceEEEEeeccCCC
Q 030289          148 RQRRWYIQAACATSGQ  163 (180)
Q Consensus       148 ~~~~~~~~~~Sa~~~~  163 (180)
                      .+.+++.++.++.++.
T Consensus       161 ~~~~~~~i~~~c~~~~  176 (202)
T cd04102         161 EQGNAEEINLNCTNGR  176 (202)
T ss_pred             HhcCCceEEEecCCcc
Confidence            4455666666766543

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.96  E-value=2.1e-30  Score=160.65  Aligned_cols=156  Identities=19%  Similarity=0.355  Sum_probs=126.5

Q ss_pred             EEEcCCCCChHHHHHHhhcCCcc--ccccccceeEEEEEE----cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEEC
Q 030289           20 LMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDS   93 (180)
Q Consensus        20 ~i~G~~~~GKStli~~l~~~~~~--~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   93 (180)
                      +++|++++|||+|+-++..+.+.  ...+|+++++....+    .++++++|||.||+++++.+..|++++|+.+++||+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            36899999999999888777633  345788877754333    578999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHH
Q 030289           94 NDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLS  173 (180)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  173 (180)
                      .+..+++....|+.++.... ...+.+.+++||||+..++.+   ....+...++.+++||.++||++|.|++..|-.+.
T Consensus        81 ankasfdn~~~wlsei~ey~-k~~v~l~llgnk~d~a~er~v---~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia  156 (192)
T KOG0083|consen   81 ANKASFDNCQAWLSEIHEYA-KEAVALMLLGNKCDLAHERAV---KRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIA  156 (192)
T ss_pred             ccchhHHHHHHHHHHHHHHH-HhhHhHhhhccccccchhhcc---ccchHHHHHHHHCCCceeccccccccHhHHHHHHH
Confidence            99999999999999997654 356788999999999664321   11222233345678899999999999999999999


Q ss_pred             HHhhhc
Q 030289          174 SNVSAK  179 (180)
Q Consensus       174 ~~~~~~  179 (180)
                      +.+.+.
T Consensus       157 ~~l~k~  162 (192)
T KOG0083|consen  157 EELKKL  162 (192)
T ss_pred             HHHHHh
Confidence            988764

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.96  E-value=6.4e-28  Score=164.94  Aligned_cols=161  Identities=20%  Similarity=0.290  Sum_probs=132.9

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeE-EEEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV-ETVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV   90 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~-~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (180)
                      +.+||+++|.+|+|||+|+.+|..+. ...|.||++-.+ ..+.+  +...+.|+||+|++++..+...+++..|++++|
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV   81 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV   81 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence            57899999999999999999999988 556678887433 33333  557889999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHH
Q 030289           91 VDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLD  170 (180)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  170 (180)
                      |+++++.||+.+..+...+........+|+++|+||+|+...+.+..-   .+...+...+++|+++||+.+.+++++|.
T Consensus        82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~e---eg~~la~~~~~~f~E~Sak~~~~v~~~F~  158 (196)
T KOG0395|consen   82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEE---EGKALARSWGCAFIETSAKLNYNVDEVFY  158 (196)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHH---HHHHHHHhcCCcEEEeeccCCcCHHHHHH
Confidence            999999999999999999966666667899999999999874432221   11122445567899999999999999999


Q ss_pred             HHHHHhhh
Q 030289          171 WLSSNVSA  178 (180)
Q Consensus       171 ~l~~~~~~  178 (180)
                      .+.+.+..
T Consensus       159 ~L~r~~~~  166 (196)
T KOG0395|consen  159 ELVREIRL  166 (196)
T ss_pred             HHHHHHHh
Confidence            99998765

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.95  E-value=8.6e-27  Score=157.00  Aligned_cols=152  Identities=16%  Similarity=0.212  Sum_probs=108.6

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCCcc-c--cccccceeEEEEEEcCeEEEEEEcCCCCCC----h-----hhHHhhccccC
Q 030289           18 RILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKNVSFTVWDVGGQDKI----R-----PLWRHYFQNTH   85 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~~~-~--~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~----~-----~~~~~~~~~~~   85 (180)
                      +|+++|++|+|||||+|+|++.... .  ...|.+.....+..++..+.+|||||....    +     .........+|
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d   81 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRA   81 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccC
Confidence            7999999999999999999987742 1  123566666666667889999999997421    0     11111122368


Q ss_pred             EEEEEEECCChhh--HHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCC
Q 030289           86 GLIFVVDSNDRER--IGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQ  163 (180)
Q Consensus        86 ~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  163 (180)
                      ++++|+|+++..+  ++....|+..+...  ..+.|+++|+||+|+.+.....+....     ......++++|||++|.
T Consensus        82 ~~l~v~d~~~~~~~~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~  154 (168)
T cd01897          82 AVLFLFDPSETCGYSLEEQLSLFEEIKPL--FKNKPVIVVLNKIDLLTFEDLSEIEEE-----EELEGEEVLKISTLTEE  154 (168)
T ss_pred             cEEEEEeCCcccccchHHHHHHHHHHHhh--cCcCCeEEEEEccccCchhhHHHHHHh-----hhhccCceEEEEecccC
Confidence            9999999987654  35555676666433  247899999999999765443331111     12235689999999999


Q ss_pred             ChHHHHHHHHHHh
Q 030289          164 GLYEGLDWLSSNV  176 (180)
Q Consensus       164 ~i~~~~~~l~~~~  176 (180)
                      |++++++++.+.+
T Consensus       155 gi~~l~~~l~~~~  167 (168)
T cd01897         155 GVDEVKNKACELL  167 (168)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999999876

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01898 Obg Obg subfamily

Probab=99.95  E-value=4e-27  Score=158.88  Aligned_cols=156  Identities=25%  Similarity=0.233  Sum_probs=110.9

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCCcc-c--cccccceeEEEEEEcCe-EEEEEEcCCCCC----ChhhHHh---hccccCE
Q 030289           18 RILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKNV-SFTVWDVGGQDK----IRPLWRH---YFQNTHG   86 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~~~-~--~~~t~~~~~~~~~~~~~-~~~i~D~~G~~~----~~~~~~~---~~~~~~~   86 (180)
                      +|+++|++|||||||+|+|.+.... .  ...|.......+...+. .+.+|||||...    .......   .+..+|+
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~   81 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL   81 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence            6899999999999999999876521 1  12355555555666665 999999999632    1122223   3446999


Q ss_pred             EEEEEECCCh-hhHHHHHHHHHHHhccc-ccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCC
Q 030289           87 LIFVVDSNDR-ERIGEAKDELHRMLSED-ELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQG  164 (180)
Q Consensus        87 ~i~v~d~~~~-~~~~~~~~~~~~~~~~~-~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  164 (180)
                      +++|+|++++ ++++.+..|...+.... ...++|+++|+||+|+.+.....+........   ....+++++|++++.|
T Consensus        82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~g  158 (170)
T cd01898          82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKE---LWGKPVFPISALTGEG  158 (170)
T ss_pred             EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhh---CCCCCEEEEecCCCCC
Confidence            9999999998 78888888877775432 12468999999999987654433322221111   0245799999999999


Q ss_pred             hHHHHHHHHHHh
Q 030289          165 LYEGLDWLSSNV  176 (180)
Q Consensus       165 i~~~~~~l~~~~  176 (180)
                      ++++++++.+.+
T Consensus       159 i~~l~~~i~~~~  170 (170)
T cd01898         159 LDELLRKLAELL  170 (170)
T ss_pred             HHHHHHHHHhhC
Confidence            999999998753

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.7e-27  Score=149.30  Aligned_cols=160  Identities=19%  Similarity=0.314  Sum_probs=130.9

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCCccccc-cccceeE----EEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEE
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNV----ETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF   89 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~-~t~~~~~----~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   89 (180)
                      ..||-+++|+-|+|||+|++.|...++...- .|+++.+    ..+..+++++++|||.|+++++..++.|++++.+++.
T Consensus        10 yifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalm   89 (215)
T KOG0097|consen   10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   89 (215)
T ss_pred             heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeE
Confidence            4689999999999999999999987744433 3666544    3455588999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHH
Q 030289           90 VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGL  169 (180)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  169 (180)
                      |+|++.+.+...+..|+.+..+.. .++..+++++||.|+...+++.-..   ..+++...+..|.++|+++|.|+++.|
T Consensus        90 vyditrrstynhlsswl~dar~lt-npnt~i~lignkadle~qrdv~yee---ak~faeengl~fle~saktg~nvedaf  165 (215)
T KOG0097|consen   90 VYDITRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLESQRDVTYEE---AKEFAEENGLMFLEASAKTGQNVEDAF  165 (215)
T ss_pred             EEEehhhhhhhhHHHHHhhhhccC-CCceEEEEecchhhhhhcccCcHHH---HHHHHhhcCeEEEEecccccCcHHHHH
Confidence            999999999999999999886543 4788899999999997765432111   123345567789999999999999999


Q ss_pred             HHHHHHhhh
Q 030289          170 DWLSSNVSA  178 (180)
Q Consensus       170 ~~l~~~~~~  178 (180)
                      -+..+++.+
T Consensus       166 le~akkiyq  174 (215)
T KOG0097|consen  166 LETAKKIYQ  174 (215)
T ss_pred             HHHHHHHHH
Confidence            998888765

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=4e-28  Score=156.79  Aligned_cols=179  Identities=39%  Similarity=0.717  Sum_probs=153.9

Q ss_pred             CcchHHHH-hhhcccCccEEEEEcCCCCChHHHHHHhhcCC--------ccccccccceeEEEEEEcCeEEEEEEcCCCC
Q 030289            1 MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGE--------IVTTIPTIGFNVETVEYKNVSFTVWDVGGQD   71 (180)
Q Consensus         1 ~~~~~~~~-~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~--------~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~   71 (180)
                      |=.+|+.+ +..+....+.|+|+|+-++|||||+.++....        ..+-.+|++.+..++.+.+..+.+||.+|++
T Consensus         1 m~tl~~gl~~~~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe   80 (197)
T KOG0076|consen    1 MFTLMSGLYKYMFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQE   80 (197)
T ss_pred             ChhHHHHHHHHHhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChH
Confidence            44567777 78888999999999999999999998775322        2334579999999999999999999999999


Q ss_pred             CChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCC-CccCCc
Q 030289           72 KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGL-HSLRQR  150 (180)
Q Consensus        72 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~-~~~~~~  150 (180)
                      ..+++|..||..+|++++++|+++++.++.....+..+.......+.|+++.+||.|+.+.....++...++. .....+
T Consensus        81 ~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~r  160 (197)
T KOG0076|consen   81 SLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRR  160 (197)
T ss_pred             HHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCc
Confidence            9999999999999999999999999999999998888888777889999999999999998777777666653 222345


Q ss_pred             ceEEEEeeccCCCChHHHHHHHHHHhhhc
Q 030289          151 RWYIQAACATSGQGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       151 ~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  179 (180)
                      ..++.++||.+|+||++...|++..+.+.
T Consensus       161 d~~~~pvSal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  161 DNPFQPVSALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             cCccccchhhhcccHHHHHHHHHHHHhhc
Confidence            66899999999999999999999988764

>cd04171 SelB SelB subfamily

Probab=99.95  E-value=1.8e-26  Score=154.68  Aligned_cols=149  Identities=21%  Similarity=0.152  Sum_probs=103.5

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCC---cc-cc--ccccceeEEEEEEc-CeEEEEEEcCCCCCChhhHHhhccccCEEEE
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGE---IV-TT--IPTIGFNVETVEYK-NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF   89 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~---~~-~~--~~t~~~~~~~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   89 (180)
                      +.|+++|++|||||||+++|.+..   .. +.  ..|.+..+..+... +..+.+|||||++++......++.++|++++
T Consensus         1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~   80 (164)
T cd04171           1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL   80 (164)
T ss_pred             CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence            468999999999999999998643   21 11  23555555556555 7899999999999887777778889999999


Q ss_pred             EEECCC---hhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCH----hHHHhHhCCCccCCcceEEEEeeccCC
Q 030289           90 VVDSND---RERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSV----SEVTDKLGLHSLRQRRWYIQAACATSG  162 (180)
Q Consensus        90 v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~  162 (180)
                      |+|+++   +.+.+.+.    .. ..  ....|+++++||+|+.+....    +++.+.+....  ..+.+++++|++++
T Consensus        81 V~d~~~~~~~~~~~~~~----~~-~~--~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~  151 (164)
T cd04171          81 VVAADEGIMPQTREHLE----IL-EL--LGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTF--LADAPIFPVSAVTG  151 (164)
T ss_pred             EEECCCCccHhHHHHHH----HH-HH--hCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcC--cCCCcEEEEeCCCC
Confidence            999976   22222221    11 11  122489999999999764211    22222222110  13468999999999


Q ss_pred             CChHHHHHHHHH
Q 030289          163 QGLYEGLDWLSS  174 (180)
Q Consensus       163 ~~i~~~~~~l~~  174 (180)
                      .|+++++..+.+
T Consensus       152 ~~v~~l~~~l~~  163 (164)
T cd04171         152 EGIEELKEYLDE  163 (164)
T ss_pred             cCHHHHHHHHhh
Confidence            999999998764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd01890 LepA LepA subfamily

Probab=99.95  E-value=3.3e-26  Score=155.71  Aligned_cols=150  Identities=16%  Similarity=0.201  Sum_probs=106.9

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCC--c------ccccc------ccceeE----EEE-----EEcCeEEEEEEcCCCCCCh
Q 030289           18 RILMVGLDAAGKTTILYKLKLGE--I------VTTIP------TIGFNV----ETV-----EYKNVSFTVWDVGGQDKIR   74 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~--~------~~~~~------t~~~~~----~~~-----~~~~~~~~i~D~~G~~~~~   74 (180)
                      ||+++|++++|||||+++|++..  .      ..+.+      +.+...    ..+     ...++.+.+|||||++.+.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            79999999999999999998632  1      11111      112221    112     2256789999999999999


Q ss_pred             hhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC---HhHHHhHhCCCccCCcc
Q 030289           75 PLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS---VSEVTDKLGLHSLRQRR  151 (180)
Q Consensus        75 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~  151 (180)
                      ..+..+++++|++++|+|+++..+.+....|....     ..++|+++|+||+|+.+...   .+++.+.++..     .
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-----~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~-----~  151 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-----ENNLEIIPVINKIDLPSADPERVKQQIEDVLGLD-----P  151 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-----HcCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCC-----c
Confidence            99999999999999999998866555555443322     24678999999999865321   12233332221     1


Q ss_pred             eEEEEeeccCCCChHHHHHHHHHHhh
Q 030289          152 WYIQAACATSGQGLYEGLDWLSSNVS  177 (180)
Q Consensus       152 ~~~~~~Sa~~~~~i~~~~~~l~~~~~  177 (180)
                      ..++++||++|.|++++++++.+.+.
T Consensus       152 ~~~~~~Sa~~g~gi~~l~~~l~~~~~  177 (179)
T cd01890         152 SEAILVSAKTGLGVEDLLEAIVERIP  177 (179)
T ss_pred             ccEEEeeccCCCCHHHHHHHHHhhCC
Confidence            25899999999999999999998764

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.95  E-value=1.4e-26  Score=144.86  Aligned_cols=164  Identities=48%  Similarity=0.818  Sum_probs=152.1

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcC-eEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN-VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV   91 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (180)
                      +++.+||+++|..++|||||+..|.+..+....||.|++...+..++ ..+.+||.+|+...+..|..||.+.|++|||+
T Consensus        14 t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVI   93 (185)
T KOG0074|consen   14 TRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVI   93 (185)
T ss_pred             CcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEEE
Confidence            37899999999999999999999998888888999999999999965 99999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHH
Q 030289           92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDW  171 (180)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  171 (180)
                      |++|+..++++...+.+++.......+|+.+..||.|+......+++...+.+...+.+-+.+-+||+.+++|+..-.+|
T Consensus        94 DS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg~~w  173 (185)
T KOG0074|consen   94 DSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGSDW  173 (185)
T ss_pred             eCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCcchh
Confidence            99999999999999999888877888999999999999988888899989888888889999999999999999998888


Q ss_pred             HHHHh
Q 030289          172 LSSNV  176 (180)
Q Consensus       172 l~~~~  176 (180)
                      +....
T Consensus       174 v~sn~  178 (185)
T KOG0074|consen  174 VQSNP  178 (185)
T ss_pred             hhcCC
Confidence            87654

>cd01878 HflX HflX subfamily

Probab=99.94  E-value=4.6e-26  Score=158.09  Aligned_cols=154  Identities=18%  Similarity=0.174  Sum_probs=109.8

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCc-c--ccccccceeEEEEEEcCe-EEEEEEcCCCCCC--hhh------HHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEI-V--TTIPTIGFNVETVEYKNV-SFTVWDVGGQDKI--RPL------WRHYF   81 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~-~--~~~~t~~~~~~~~~~~~~-~~~i~D~~G~~~~--~~~------~~~~~   81 (180)
                      ...++|+++|++|||||||+|++++... .  ...+|.+.....+...+. .+.+|||||....  ...      ....+
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~  118 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTLEEV  118 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHHHHH
Confidence            4468999999999999999999998762 2  234566666666666444 8999999997321  111      11235


Q ss_pred             cccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccC
Q 030289           82 QNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATS  161 (180)
Q Consensus        82 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  161 (180)
                      .++|++++|+|++++.+......|...+.. ....++|+++|+||+|+.+.....        ........+++++||++
T Consensus       119 ~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~-~~~~~~~viiV~NK~Dl~~~~~~~--------~~~~~~~~~~~~~Sa~~  189 (204)
T cd01878         119 AEADLLLHVVDASDPDYEEQIETVEKVLKE-LGAEDIPMILVLNKIDLLDDEELE--------ERLEAGRPDAVFISAKT  189 (204)
T ss_pred             hcCCeEEEEEECCCCChhhHHHHHHHHHHH-cCcCCCCEEEEEEccccCChHHHH--------HHhhcCCCceEEEEcCC
Confidence            689999999999988776665555443322 223468999999999997643322        11223345799999999


Q ss_pred             CCChHHHHHHHHHHh
Q 030289          162 GQGLYEGLDWLSSNV  176 (180)
Q Consensus       162 ~~~i~~~~~~l~~~~  176 (180)
                      +.|+++++++|.+.+
T Consensus       190 ~~gi~~l~~~L~~~~  204 (204)
T cd01878         190 GEGLDELLEAIEELL  204 (204)
T ss_pred             CCCHHHHHHHHHhhC
Confidence            999999999998764

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.94  E-value=2.3e-27  Score=159.16  Aligned_cols=163  Identities=19%  Similarity=0.246  Sum_probs=125.7

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeE-EEEE---EcCeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV-ETVE---YKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLI   88 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~-~~~~---~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   88 (180)
                      ...+|++++|+..+|||+|+-.+..+. +..+.||+--++ ..+.   ...+.+.+|||+|++.|+.+++..|.++|+++
T Consensus         2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl   81 (198)
T KOG0393|consen    2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL   81 (198)
T ss_pred             ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence            356899999999999999998888777 667778776333 2333   35678999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCCCCH-hHHHh--------HhCCCccCCcc-eEEEEe
Q 030289           89 FVVDSNDRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNAMSV-SEVTD--------KLGLHSLRQRR-WYIQAA  157 (180)
Q Consensus        89 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~-~~~~~--------~~~~~~~~~~~-~~~~~~  157 (180)
                      +||++.++.+++... +|+.++..+  .++.|+++|++|.|+.++... +.+..        ..+...++..+ ..|++|
T Consensus        82 ~cfsv~~p~S~~nv~~kW~pEi~~~--cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec  159 (198)
T KOG0393|consen   82 LCFSVVSPESFENVKSKWIPEIKHH--CPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC  159 (198)
T ss_pred             EEEEcCChhhHHHHHhhhhHHHHhh--CCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence            999999999999875 787777544  389999999999999854321 11110        11111112233 479999


Q ss_pred             eccCCCChHHHHHHHHHHhhh
Q 030289          158 CATSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       158 Sa~~~~~i~~~~~~l~~~~~~  178 (180)
                      ||+++.|++++|+..++....
T Consensus       160 Sa~tq~~v~~vF~~a~~~~l~  180 (198)
T KOG0393|consen  160 SALTQKGVKEVFDEAIRAALR  180 (198)
T ss_pred             hhhhhCCcHHHHHHHHHHHhc
Confidence            999999999999999988754

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.94  E-value=2e-25  Score=164.02  Aligned_cols=159  Identities=22%  Similarity=0.212  Sum_probs=117.0

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC--cccc-ccccceeEEEEEE-cCeEEEEEEcCCCCC-------ChhhHHhhcccc
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE--IVTT-IPTIGFNVETVEY-KNVSFTVWDVGGQDK-------IRPLWRHYFQNT   84 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~--~~~~-~~t~~~~~~~~~~-~~~~~~i~D~~G~~~-------~~~~~~~~~~~~   84 (180)
                      -..|+++|.|+||||||+|+|+..+  ...+ ..|..+....+.+ +..++.+||+||..+       +...+...++++
T Consensus       158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a  237 (335)
T PRK12299        158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT  237 (335)
T ss_pred             cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence            3568999999999999999999765  2222 3467777777777 567899999999642       122233455689


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHhccc-ccCCCeEEEEEecCCCCCCCCHhH-HHhHhCCCccCCcceEEEEeeccCC
Q 030289           85 HGLIFVVDSNDRERIGEAKDELHRMLSED-ELREAVLLVFANKQDLPNAMSVSE-VTDKLGLHSLRQRRWYIQAACATSG  162 (180)
Q Consensus        85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiiv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~  162 (180)
                      +++++|+|+++.++++....|...+.... ...++|+++|+||+|+.+.....+ .....    ....+.+++++||+++
T Consensus       238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~----~~~~~~~i~~iSAktg  313 (335)
T PRK12299        238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALE----LAALGGPVFLISAVTG  313 (335)
T ss_pred             CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHH----HHhcCCCEEEEEcCCC
Confidence            99999999998778888888877775442 234789999999999976443221 11111    1223467999999999


Q ss_pred             CChHHHHHHHHHHhhh
Q 030289          163 QGLYEGLDWLSSNVSA  178 (180)
Q Consensus       163 ~~i~~~~~~l~~~~~~  178 (180)
                      +|++++++++.+.+.+
T Consensus       314 ~GI~eL~~~L~~~l~~  329 (335)
T PRK12299        314 EGLDELLRALWELLEE  329 (335)
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999988765

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.94  E-value=2.6e-25  Score=149.72  Aligned_cols=154  Identities=21%  Similarity=0.194  Sum_probs=108.1

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCCcccc---ccccceeEEEEEEc---CeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289           18 RILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEYK---NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV   91 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~~~~~---~~t~~~~~~~~~~~---~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (180)
                      .|+++|++|+|||||+|+|..++....   ..|.......+..+   +..+.+|||||+..+...+..++..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            589999999999999999998774332   23444444444443   679999999999998888888999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHh---HhCCCc--cCCcceEEEEeeccCCCChH
Q 030289           92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTD---KLGLHS--LRQRRWYIQAACATSGQGLY  166 (180)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~Sa~~~~~i~  166 (180)
                      |+++....+. ...+..+ .   ..+.|+++|+||+|+.... .+.+..   ......  ......+++++|+++|.|++
T Consensus        82 d~~~~~~~~~-~~~~~~~-~---~~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  155 (168)
T cd01887          82 AADDGVMPQT-IEAIKLA-K---AANVPFIVALNKIDKPNAN-PERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGID  155 (168)
T ss_pred             ECCCCccHHH-HHHHHHH-H---HcCCCEEEEEEceeccccc-HHHHHHHHHHhhccccccccCcCcEEEeecccCCCHH
Confidence            9987432111 1112212 1   1468999999999987532 222211   111111  11234689999999999999


Q ss_pred             HHHHHHHHHhh
Q 030289          167 EGLDWLSSNVS  177 (180)
Q Consensus       167 ~~~~~l~~~~~  177 (180)
                      ++++++.+...
T Consensus       156 ~l~~~l~~~~~  166 (168)
T cd01887         156 DLLEAILLLAE  166 (168)
T ss_pred             HHHHHHHHhhh
Confidence            99999988654

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.94  E-value=4.6e-25  Score=146.59  Aligned_cols=153  Identities=22%  Similarity=0.294  Sum_probs=113.8

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEE--EEEcC--eEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVET--VEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV   90 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~--~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (180)
                      .+||+++|++|+|||||++++.... ...+.++++.....  +...+  +.+.+||+||+..+...+..++++++.++.+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            3799999999999999999999888 44445555544443  55566  7899999999999999999899999999999


Q ss_pred             EECCCh-hhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289           91 VDSNDR-ERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG  168 (180)
Q Consensus        91 ~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (180)
                      +|.... .++.... .|...+..... .+.|+++++||+|+.......+....+..    ....+++++||.++.|++++
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~----~~~~~~~~~sa~~~~gv~~~  155 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAKLKTHVAFLFAK----LNGEPIIPLSAETGKNIDSA  155 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcchhhHHHHHHHhh----ccCCceEEeecCCCCCHHHH
Confidence            998765 5555544 55555544332 27899999999999764423232222221    12236999999999999999


Q ss_pred             HHHHH
Q 030289          169 LDWLS  173 (180)
Q Consensus       169 ~~~l~  173 (180)
                      ++++-
T Consensus       156 ~~~l~  160 (161)
T TIGR00231       156 FKIVE  160 (161)
T ss_pred             HHHhh
Confidence            99863

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>PLN00023 GTP-binding protein; Provisional

Probab=99.94  E-value=2.2e-25  Score=160.69  Aligned_cols=123  Identities=21%  Similarity=0.368  Sum_probs=103.1

Q ss_pred             hhcccCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeE--EEEEE---------------cCeEEEEEEcCCCC
Q 030289           10 MLFARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV--ETVEY---------------KNVSFTVWDVGGQD   71 (180)
Q Consensus        10 ~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~--~~~~~---------------~~~~~~i~D~~G~~   71 (180)
                      .+.+...+||+++|+.|||||||+++|..+.+ ..+.+|++..+  ..+.+               ..+.+.||||+|++
T Consensus        15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE   94 (334)
T PLN00023         15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE   94 (334)
T ss_pred             cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh
Confidence            45678889999999999999999999998874 45568888654  33333               24679999999999


Q ss_pred             CChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccc-----------cCCCeEEEEEecCCCCCC
Q 030289           72 KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDE-----------LREAVLLVFANKQDLPNA  132 (180)
Q Consensus        72 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~iiiv~nK~D~~~~  132 (180)
                      +|+.++..++++++++|+|||++++++++.+..|+..+.....           ..++|+++|+||+|+...
T Consensus        95 rfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~  166 (334)
T PLN00023         95 RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK  166 (334)
T ss_pred             hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence            9999999999999999999999999999999999998875421           125899999999998653

>PRK04213 GTP-binding protein; Provisional

Probab=99.93  E-value=5e-26  Score=157.58  Aligned_cols=160  Identities=23%  Similarity=0.303  Sum_probs=103.7

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCCcc-ccccccceeEEEEEEcCeEEEEEEcCC-----------CCCChhhHHhh
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNVSFTVWDVGG-----------QDKIRPLWRHY   80 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~~   80 (180)
                      +.+.++|+++|++|||||||+|+|.+.... ...|++......+...  .+.+|||||           ++.++..+..+
T Consensus         6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   83 (201)
T PRK04213          6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRY   83 (201)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHHHH
Confidence            346789999999999999999999987632 2344444333333333  689999999           34455555555


Q ss_pred             cc----ccCEEEEEEECCChhhH-H--------HHHHHHHHHhcccccCCCeEEEEEecCCCCCCC--CHhHHHhHhCCC
Q 030289           81 FQ----NTHGLIFVVDSNDRERI-G--------EAKDELHRMLSEDELREAVLLVFANKQDLPNAM--SVSEVTDKLGLH  145 (180)
Q Consensus        81 ~~----~~~~~i~v~d~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~--~~~~~~~~~~~~  145 (180)
                      +.    .++++++|+|.++...+ +        .....+...+.   ..++|+++|+||+|+.+..  ..+++...++..
T Consensus        84 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~  160 (201)
T PRK04213         84 IEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNRDEVLDEIAERLGLY  160 (201)
T ss_pred             HHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcHHHHHHHHHHHhcCC
Confidence            54    35788888887643211 0        01111122222   2478999999999986543  233444444431


Q ss_pred             -ccCCcceEEEEeeccCCCChHHHHHHHHHHhhh
Q 030289          146 -SLRQRRWYIQAACATSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       146 -~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  178 (180)
                       .....+.+++++||++| |+++++++|.+.+.+
T Consensus       161 ~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~  193 (201)
T PRK04213        161 PPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE  193 (201)
T ss_pred             ccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence             11111236899999999 999999999998765

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.93  E-value=1.3e-25  Score=147.33  Aligned_cols=134  Identities=21%  Similarity=0.187  Sum_probs=92.7

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCC-----CChhhHHhhccccCEEEEEE
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQD-----KIRPLWRHYFQNTHGLIFVV   91 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~~~~~~~~~~~~i~v~   91 (180)
                      +||+++|++|||||||+|+|.+... .+.+|.+..+     ..   .+|||||+.     .+..... .++++|++++|+
T Consensus         1 ~kv~liG~~~vGKSsL~~~l~~~~~-~~~~t~~~~~-----~~---~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~   70 (142)
T TIGR02528         1 KRIMFIGSVGCGKTTLTQALQGEEI-LYKKTQAVEY-----ND---GAIDTPGEYVENRRLYSALIV-TAADADVIALVQ   70 (142)
T ss_pred             CeEEEECCCCCCHHHHHHHHcCCcc-ccccceeEEE-----cC---eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEe
Confidence            3899999999999999999997764 2344543332     22   689999973     2333333 578999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC-CCHhHHHhHhCCCccCCcc-eEEEEeeccCCCChHHHH
Q 030289           92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA-MSVSEVTDKLGLHSLRQRR-WYIQAACATSGQGLYEGL  169 (180)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~  169 (180)
                      |++++.++.. ..|....       ..|+++|+||+|+.+. ...++..+...     ..+ .+++++||++|.|++++|
T Consensus        71 d~~~~~s~~~-~~~~~~~-------~~p~ilv~NK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~  137 (142)
T TIGR02528        71 SATDPESRFP-PGFASIF-------VKPVIGLVTKIDLAEADVDIERAKELLE-----TAGAEPIFEISSVDEQGLEALV  137 (142)
T ss_pred             cCCCCCcCCC-hhHHHhc-------cCCeEEEEEeeccCCcccCHHHHHHHHH-----HcCCCcEEEEecCCCCCHHHHH
Confidence            9998887644 2333221       2389999999998652 22222221111     112 278999999999999999


Q ss_pred             HHHH
Q 030289          170 DWLS  173 (180)
Q Consensus       170 ~~l~  173 (180)
                      +++.
T Consensus       138 ~~l~  141 (142)
T TIGR02528       138 DYLN  141 (142)
T ss_pred             HHHh
Confidence            9874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.93  E-value=8.8e-25  Score=168.30  Aligned_cols=159  Identities=16%  Similarity=0.158  Sum_probs=111.8

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCCc--ccccc--ccceeEEEEEEcCeEEEEEEcCCCCC----------Chhh-HHh
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNVSFTVWDVGGQDK----------IRPL-WRH   79 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~-~~~   79 (180)
                      ..++|+++|.+|||||||+|+|++...  ....+  |.+.....+...+..+.+|||||..+          +... ...
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~  289 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA  289 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence            468999999999999999999998762  33333  44444556667888899999999532          2222 234


Q ss_pred             hccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeec
Q 030289           80 YFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACA  159 (180)
Q Consensus        80 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (180)
                      +++++|++++|+|+++..+.+... ++..+.    ..++|+++|+||+|+.+.....................+++++||
T Consensus       290 ~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~----~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SA  364 (472)
T PRK03003        290 AIEAAEVAVVLIDASEPISEQDQR-VLSMVI----EAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISA  364 (472)
T ss_pred             HHhcCCEEEEEEeCCCCCCHHHHH-HHHHHH----HcCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEEC
Confidence            678999999999999877665553 333332    247899999999999753322222222221111223357899999


Q ss_pred             cCCCChHHHHHHHHHHhhh
Q 030289          160 TSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       160 ~~~~~i~~~~~~l~~~~~~  178 (180)
                      ++|.|++++|..+.+.+.+
T Consensus       365 k~g~gv~~lf~~i~~~~~~  383 (472)
T PRK03003        365 KTGRAVDKLVPALETALES  383 (472)
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            9999999999999987653

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.93  E-value=2.8e-24  Score=142.96  Aligned_cols=143  Identities=20%  Similarity=0.213  Sum_probs=106.2

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCCc--ccccc--ccceeEEEEEEcCeEEEEEEcCCCCCChh--------hHHhhcccc
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNVSFTVWDVGGQDKIRP--------LWRHYFQNT   84 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~   84 (180)
                      ++|+++|++|+|||||++++++...  ....+  |..+....+...+.++.+|||||...+..        .....+.++
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~   81 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA   81 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence            6899999999999999999998762  22222  33344455666788999999999765532        133466789


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCC
Q 030289           85 HGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQG  164 (180)
Q Consensus        85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  164 (180)
                      |++++|+|++++.+......+..       ....|+++|+||+|+.+....          .......+++++||+++.|
T Consensus        82 ~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~----------~~~~~~~~~~~~Sa~~~~~  144 (157)
T cd04164          82 DLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL----------LSLLAGKPIIAISAKTGEG  144 (157)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc----------ccccCCCceEEEECCCCCC
Confidence            99999999998766555443322       257899999999999764432          1223356899999999999


Q ss_pred             hHHHHHHHHHHh
Q 030289          165 LYEGLDWLSSNV  176 (180)
Q Consensus       165 i~~~~~~l~~~~  176 (180)
                      ++++++++.+.+
T Consensus       145 v~~l~~~l~~~~  156 (157)
T cd04164         145 LDELKEALLELA  156 (157)
T ss_pred             HHHHHHHHHHhh
Confidence            999999998764

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.93  E-value=2.6e-24  Score=147.33  Aligned_cols=155  Identities=22%  Similarity=0.210  Sum_probs=112.5

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCCccccc-------------------cccceeEEEEEEcCeEEEEEEcCCCCCChhhHH
Q 030289           18 RILMVGLDAAGKTTILYKLKLGEIVTTI-------------------PTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWR   78 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~~~~~~-------------------~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~   78 (180)
                      +|+++|.+|+|||||+|+|++.......                   .|.......+...+..+.+|||||...+...+.
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~   80 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI   80 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence            5899999999999999999876632211                   233334445555788999999999998888899


Q ss_pred             hhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHh----HHHhHhCCCcc-------
Q 030289           79 HYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVS----EVTDKLGLHSL-------  147 (180)
Q Consensus        79 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~----~~~~~~~~~~~-------  147 (180)
                      .+++.+|++++|+|+.++.... ...++....    ..+.|+++|+||+|+..+....    ++.+.+.....       
T Consensus        81 ~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~----~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (189)
T cd00881          81 RGLSVSDGAILVVDANEGVQPQ-TREHLRIAR----EGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEG  155 (189)
T ss_pred             HHHHhcCEEEEEEECCCCCcHH-HHHHHHHHH----HCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhh
Confidence            9999999999999998754322 223333322    1478999999999998644322    22223322111       


Q ss_pred             --CCcceEEEEeeccCCCChHHHHHHHHHHhh
Q 030289          148 --RQRRWYIQAACATSGQGLYEGLDWLSSNVS  177 (180)
Q Consensus       148 --~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  177 (180)
                        .....+++++||++|.|+++++.++.+.+.
T Consensus       156 ~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~  187 (189)
T cd00881         156 TRNGLLVPIVPGSALTGIGVEELLEAIVEHLP  187 (189)
T ss_pred             cccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence              234678999999999999999999998875

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>PRK15494 era GTPase Era; Provisional

Probab=99.93  E-value=1.6e-24  Score=160.25  Aligned_cols=156  Identities=15%  Similarity=0.241  Sum_probs=108.8

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCcc----ccccccceeEEEEEEcCeEEEEEEcCCCCC-Chhh-------HHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVETVEYKNVSFTVWDVGGQDK-IRPL-------WRHYF   81 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~----~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~-------~~~~~   81 (180)
                      .+..+|+++|++|||||||+|+|.+....    ....|.+.....+..++.++.+|||||... +..+       ....+
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l  129 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL  129 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence            45679999999999999999999987743    223455555566777888999999999743 2222       12346


Q ss_pred             cccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccC
Q 030289           82 QNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATS  161 (180)
Q Consensus        82 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  161 (180)
                      .++|++++|+|..+  ++.....++...+..   .+.|.++|+||+|+.+. ...+..+.+...   .....++++||++
T Consensus       130 ~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~-~~~~~~~~l~~~---~~~~~i~~iSAkt  200 (339)
T PRK15494        130 HSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK-YLNDIKAFLTEN---HPDSLLFPISALS  200 (339)
T ss_pred             hhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc-cHHHHHHHHHhc---CCCcEEEEEeccC
Confidence            78999999999764  333443333333222   24567889999998653 333444333211   1124799999999


Q ss_pred             CCChHHHHHHHHHHhhh
Q 030289          162 GQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       162 ~~~i~~~~~~l~~~~~~  178 (180)
                      |.|++++++++.+.+.+
T Consensus       201 g~gv~eL~~~L~~~l~~  217 (339)
T PRK15494        201 GKNIDGLLEYITSKAKI  217 (339)
T ss_pred             ccCHHHHHHHHHHhCCC
Confidence            99999999999988764

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.93  E-value=1.3e-24  Score=159.64  Aligned_cols=157  Identities=24%  Similarity=0.251  Sum_probs=114.3

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC--cccc-ccccceeEEEEEEcC-eEEEEEEcCCCCCC----hhh---HHhhcccc
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE--IVTT-IPTIGFNVETVEYKN-VSFTVWDVGGQDKI----RPL---WRHYFQNT   84 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~--~~~~-~~t~~~~~~~~~~~~-~~~~i~D~~G~~~~----~~~---~~~~~~~~   84 (180)
                      ...|+++|.++||||||+|+|+..+  ...+ ..|..+....+.+.+ .++.+||+||..+.    ..+   ....+.++
T Consensus       157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhiera  236 (329)
T TIGR02729       157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERT  236 (329)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence            4679999999999999999999765  2222 346666777777766 89999999996432    122   33344579


Q ss_pred             CEEEEEEECCCh---hhHHHHHHHHHHHhccc-ccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeecc
Q 030289           85 HGLIFVVDSNDR---ERIGEAKDELHRMLSED-ELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACAT  160 (180)
Q Consensus        85 ~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~-~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  160 (180)
                      +++++|+|+++.   ++++....|..++.... ...+.|+++|+||+|+.++...+++.+.+.    ...+.+++++||+
T Consensus       237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~----~~~~~~vi~iSAk  312 (329)
T TIGR02729       237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELK----KALGKPVFPISAL  312 (329)
T ss_pred             CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHH----HHcCCcEEEEEcc
Confidence            999999999876   67777777766654432 235789999999999976543333333322    1223579999999


Q ss_pred             CCCChHHHHHHHHHHh
Q 030289          161 SGQGLYEGLDWLSSNV  176 (180)
Q Consensus       161 ~~~~i~~~~~~l~~~~  176 (180)
                      +++|++++++++.+.+
T Consensus       313 tg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       313 TGEGLDELLYALAELL  328 (329)
T ss_pred             CCcCHHHHHHHHHHHh
Confidence            9999999999998865

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.93  E-value=4.6e-25  Score=149.51  Aligned_cols=152  Identities=20%  Similarity=0.191  Sum_probs=109.0

Q ss_pred             EEcCCCCChHHHHHHhhcCCc--ccc-ccccceeEEEEEEc-CeEEEEEEcCCCCC----Chh---hHHhhccccCEEEE
Q 030289           21 MVGLDAAGKTTILYKLKLGEI--VTT-IPTIGFNVETVEYK-NVSFTVWDVGGQDK----IRP---LWRHYFQNTHGLIF   89 (180)
Q Consensus        21 i~G~~~~GKStli~~l~~~~~--~~~-~~t~~~~~~~~~~~-~~~~~i~D~~G~~~----~~~---~~~~~~~~~~~~i~   89 (180)
                      ++|++|||||||+|+|.+...  ..+ ..|.......+... +..+.+|||||...    .+.   .....++++|++++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~   80 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH   80 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence            589999999999999998762  222 23555666666666 88999999999632    111   22345678999999


Q ss_pred             EEECCCh------hhHHHHHHHHHHHhcccc------cCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEe
Q 030289           90 VVDSNDR------ERIGEAKDELHRMLSEDE------LREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAA  157 (180)
Q Consensus        90 v~d~~~~------~~~~~~~~~~~~~~~~~~------~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (180)
                      |+|+.+.      .+++....|...+.....      ..+.|+++|+||+|+.......+..   ..........+++++
T Consensus        81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~  157 (176)
T cd01881          81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL---VRELALEEGAEVVPI  157 (176)
T ss_pred             EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH---HHHHhcCCCCCEEEE
Confidence            9999887      567777777776654322      1478999999999997654433321   111122234579999


Q ss_pred             eccCCCChHHHHHHHHHH
Q 030289          158 CATSGQGLYEGLDWLSSN  175 (180)
Q Consensus       158 Sa~~~~~i~~~~~~l~~~  175 (180)
                      |++++.|++++++++.+.
T Consensus       158 Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         158 SAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             ehhhhcCHHHHHHHHHhh
Confidence            999999999999998765

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>TIGR00436 era GTP-binding protein Era

Probab=99.93  E-value=2.4e-24  Score=155.18  Aligned_cols=152  Identities=17%  Similarity=0.136  Sum_probs=102.6

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCCcc--ccc-cccc-eeEEEEEEcCeEEEEEEcCCCCCCh--------hhHHhhccccC
Q 030289           18 RILMVGLDAAGKTTILYKLKLGEIV--TTI-PTIG-FNVETVEYKNVSFTVWDVGGQDKIR--------PLWRHYFQNTH   85 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~~~--~~~-~t~~-~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~~~~~   85 (180)
                      +|+++|.+|||||||+|+|++....  +.. .|+. .........+.++.+|||||.....        .....++.++|
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD   81 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD   81 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence            6899999999999999999987732  222 2333 2223334466789999999965431        12345678999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCCh
Q 030289           86 GLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGL  165 (180)
Q Consensus        86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  165 (180)
                      ++++|+|+++..+.+  ..++..+ ..   .+.|+++|+||+|+.+.....+....+...   ....+++++||++|.|+
T Consensus        82 vvl~VvD~~~~~~~~--~~i~~~l-~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~v~~iSA~~g~gi  152 (270)
T TIGR00436        82 LILFVVDSDQWNGDG--EFVLTKL-QN---LKRPVVLTRNKLDNKFKDKLLPLIDKYAIL---EDFKDIVPISALTGDNT  152 (270)
T ss_pred             EEEEEEECCCCCchH--HHHHHHH-Hh---cCCCEEEEEECeeCCCHHHHHHHHHHHHhh---cCCCceEEEecCCCCCH
Confidence            999999998765543  2222222 22   468999999999997532222211111111   01127999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 030289          166 YEGLDWLSSNVSA  178 (180)
Q Consensus       166 ~~~~~~l~~~~~~  178 (180)
                      +++++++.+.+.+
T Consensus       153 ~~L~~~l~~~l~~  165 (270)
T TIGR00436       153 SFLAAFIEVHLPE  165 (270)
T ss_pred             HHHHHHHHHhCCC
Confidence            9999999988754

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.93  E-value=2e-24  Score=159.93  Aligned_cols=150  Identities=19%  Similarity=0.193  Sum_probs=109.4

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCC-ccc--cccccceeEEEEEE-cCeEEEEEEcCCCCC---------ChhhHHhhc
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGE-IVT--TIPTIGFNVETVEY-KNVSFTVWDVGGQDK---------IRPLWRHYF   81 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~-~~~--~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~---------~~~~~~~~~   81 (180)
                      ..++|+++|.+|||||||+|+|++.. ...  ..+|.++....+.. .+..+.+|||||..+         +... ...+
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~t-le~~  266 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRAT-LEEV  266 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHH-HHHH
Confidence            44999999999999999999999876 222  34677777777777 578999999999722         2222 2247


Q ss_pred             cccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccC
Q 030289           82 QNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATS  161 (180)
Q Consensus        82 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  161 (180)
                      .++|++++|+|++++.+.+....|...+ ......+.|+++|+||+|+.+........   .      ...+++++||++
T Consensus       267 ~~ADlil~VvD~s~~~~~~~~~~~~~~L-~~l~~~~~piIlV~NK~Dl~~~~~v~~~~---~------~~~~~i~iSAkt  336 (351)
T TIGR03156       267 READLLLHVVDASDPDREEQIEAVEKVL-EELGAEDIPQLLVYNKIDLLDEPRIERLE---E------GYPEAVFVSAKT  336 (351)
T ss_pred             HhCCEEEEEEECCCCchHHHHHHHHHHH-HHhccCCCCEEEEEEeecCCChHhHHHHH---h------CCCCEEEEEccC
Confidence            7899999999999887766655443333 22222468999999999997543222111   1      113589999999


Q ss_pred             CCChHHHHHHHHHH
Q 030289          162 GQGLYEGLDWLSSN  175 (180)
Q Consensus       162 ~~~i~~~~~~l~~~  175 (180)
                      |.|++++++++.+.
T Consensus       337 g~GI~eL~~~I~~~  350 (351)
T TIGR03156       337 GEGLDLLLEAIAER  350 (351)
T ss_pred             CCCHHHHHHHHHhh
Confidence            99999999998765

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.93  E-value=2.1e-24  Score=143.79  Aligned_cols=146  Identities=21%  Similarity=0.212  Sum_probs=104.4

Q ss_pred             EEcCCCCChHHHHHHhhcCC-cccccc--ccceeEEEEEEcCeEEEEEEcCCCCCChh------hHHhhcc--ccCEEEE
Q 030289           21 MVGLDAAGKTTILYKLKLGE-IVTTIP--TIGFNVETVEYKNVSFTVWDVGGQDKIRP------LWRHYFQ--NTHGLIF   89 (180)
Q Consensus        21 i~G~~~~GKStli~~l~~~~-~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~~--~~~~~i~   89 (180)
                      ++|.+|+|||||+|++.+.. .....+  |.......+..++..+.+|||||+..+..      .+..++.  ++|++++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~   80 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN   80 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence            58999999999999999876 332233  55566667777788999999999876543      3555664  8999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHH
Q 030289           90 VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGL  169 (180)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  169 (180)
                      |+|+++.+..   ..++..+..    .++|+++|+||+|+.+..........+    ....+.+++++|+.++.|+++++
T Consensus        81 v~d~~~~~~~---~~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~----~~~~~~~~~~iSa~~~~~~~~l~  149 (158)
T cd01879          81 VVDATNLERN---LYLTLQLLE----LGLPVVVALNMIDEAEKRGIKIDLDKL----SELLGVPVVPTSARKGEGIDELK  149 (158)
T ss_pred             EeeCCcchhH---HHHHHHHHH----cCCCEEEEEehhhhcccccchhhHHHH----HHhhCCCeEEEEccCCCCHHHHH
Confidence            9999875432   233333322    368999999999997643222111111    11224579999999999999999


Q ss_pred             HHHHHHhh
Q 030289          170 DWLSSNVS  177 (180)
Q Consensus       170 ~~l~~~~~  177 (180)
                      +++.+.+.
T Consensus       150 ~~l~~~~~  157 (158)
T cd01879         150 DAIAELAE  157 (158)
T ss_pred             HHHHHHhc
Confidence            99988754

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.93  E-value=2.7e-24  Score=164.24  Aligned_cols=146  Identities=19%  Similarity=0.275  Sum_probs=111.4

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC--cccccc--ccceeEEEEEEcCeEEEEEEcCCCCCChhh--------HHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIP--TIGFNVETVEYKNVSFTVWDVGGQDKIRPL--------WRHYF   81 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~--~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~   81 (180)
                      +..++|+++|.+|||||||+|+|++..  .....+  |.++....+..++..+.+|||||...+...        ...++
T Consensus       213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~  292 (449)
T PRK05291        213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI  292 (449)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence            567999999999999999999999876  233333  555666677778899999999998655322        33467


Q ss_pred             cccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccC
Q 030289           82 QNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATS  161 (180)
Q Consensus        82 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  161 (180)
                      +++|++++|+|++++.+.+....|..       ..+.|+++|+||+|+.+.....           .....+++++|+++
T Consensus       293 ~~aD~il~VvD~s~~~s~~~~~~l~~-------~~~~piiiV~NK~DL~~~~~~~-----------~~~~~~~i~iSAkt  354 (449)
T PRK05291        293 EEADLVLLVLDASEPLTEEDDEILEE-------LKDKPVIVVLNKADLTGEIDLE-----------EENGKPVIRISAKT  354 (449)
T ss_pred             HhCCEEEEEecCCCCCChhHHHHHHh-------cCCCCcEEEEEhhhccccchhh-----------hccCCceEEEEeeC
Confidence            88999999999998876654433322       2468999999999997643221           11234689999999


Q ss_pred             CCChHHHHHHHHHHhh
Q 030289          162 GQGLYEGLDWLSSNVS  177 (180)
Q Consensus       162 ~~~i~~~~~~l~~~~~  177 (180)
                      |.|++++++++.+.+.
T Consensus       355 g~GI~~L~~~L~~~l~  370 (449)
T PRK05291        355 GEGIDELREAIKELAF  370 (449)
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            9999999999998764

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.93  E-value=9.7e-25  Score=143.88  Aligned_cols=151  Identities=28%  Similarity=0.416  Sum_probs=113.9

Q ss_pred             EEcCCCCChHHHHHHhhcCCc--cccccccceeEEEEEEc----CeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECC
Q 030289           21 MVGLDAAGKTTILYKLKLGEI--VTTIPTIGFNVETVEYK----NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSN   94 (180)
Q Consensus        21 i~G~~~~GKStli~~l~~~~~--~~~~~t~~~~~~~~~~~----~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~   94 (180)
                      ++|++|+|||||++++++...  ....+|. .........    +..+.+||+||+..+...+..+++.+|++++|+|++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            589999999999999998775  2333444 555554443    788999999999888888888999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHH
Q 030289           95 DRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSS  174 (180)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  174 (180)
                      ++.+......|+..........+.|+++++||+|+...........  ..........+++++|+.++.|++++++++.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~--~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  157 (157)
T cd00882          80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEEL--AEQLAKELGVPYFETSAKTGENVEELFEELAE  157 (157)
T ss_pred             CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHH--HHHHHhhcCCcEEEEecCCCCChHHHHHHHhC
Confidence            9988888888743333334456899999999999876544333210  00111234568999999999999999999863

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.93  E-value=6.5e-24  Score=161.36  Aligned_cols=152  Identities=16%  Similarity=0.183  Sum_probs=112.5

Q ss_pred             hcccCccEEEEEcCCCCChHHHHHHhhcCC--cccccc--ccceeEEEEEEcCeEEEEEEcCCCCCChhh--------HH
Q 030289           11 LFARKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIP--TIGFNVETVEYKNVSFTVWDVGGQDKIRPL--------WR   78 (180)
Q Consensus        11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~--~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~   78 (180)
                      ..-+..++|+++|++|||||||+|+|++..  .....|  |.++....+..++..+.+|||||...+...        ..
T Consensus       198 ~~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~  277 (442)
T TIGR00450       198 EKLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSF  277 (442)
T ss_pred             HHhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHH
Confidence            344678999999999999999999999875  333334  344555667778899999999998655432        34


Q ss_pred             hhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEee
Q 030289           79 HYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAAC  158 (180)
Q Consensus        79 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  158 (180)
                      .+++++|++++|+|++++.+.+..  |+....    ..+.|+++|+||+|+... +.+++.        ...+.+++++|
T Consensus       278 ~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~----~~~~piIlV~NK~Dl~~~-~~~~~~--------~~~~~~~~~vS  342 (442)
T TIGR00450       278 KAIKQADLVIYVLDASQPLTKDDF--LIIDLN----KSKKPFILVLNKIDLKIN-SLEFFV--------SSKVLNSSNLS  342 (442)
T ss_pred             HHHhhCCEEEEEEECCCCCChhHH--HHHHHh----hCCCCEEEEEECccCCCc-chhhhh--------hhcCCceEEEE
Confidence            577899999999999987766554  555442    246899999999999653 222221        12234689999


Q ss_pred             ccCCCChHHHHHHHHHHhhh
Q 030289          159 ATSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       159 a~~~~~i~~~~~~l~~~~~~  178 (180)
                      +++ .||+++++.+.+.+.+
T Consensus       343 ak~-~gI~~~~~~L~~~i~~  361 (442)
T TIGR00450       343 AKQ-LKIKALVDLLTQKINA  361 (442)
T ss_pred             Eec-CCHHHHHHHHHHHHHH
Confidence            998 6999999999887754

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.93  E-value=1.6e-24  Score=151.90  Aligned_cols=164  Identities=26%  Similarity=0.335  Sum_probs=120.6

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCcc-ccccccceeEEEEEE--c--CeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY--K--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLI   88 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~~~~~~~--~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   88 (180)
                      +..+||+++|+.|||||||+++|..+.+. .+.+|++..+.....  .  .+++.+|||+|+++++..+..++.++++++
T Consensus         3 ~~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l   82 (219)
T COG1100           3 MKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGIL   82 (219)
T ss_pred             cceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEE
Confidence            34599999999999999999999998844 455676654443333  2  577999999999999999999999999999


Q ss_pred             EEEECCCh-hhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhH-HHhH----------hCCCccC-CcceEEE
Q 030289           89 FVVDSNDR-ERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSE-VTDK----------LGLHSLR-QRRWYIQ  155 (180)
Q Consensus        89 ~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~-~~~~----------~~~~~~~-~~~~~~~  155 (180)
                      +|+|..+. ...+....|...+... .....|+++|+||+|+........ +...          ....... .....++
T Consensus        83 ~~~d~~~~~~~~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (219)
T COG1100          83 IVYDSTLRESSDELTEEWLEELREL-APDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALL  161 (219)
T ss_pred             EEEecccchhhhHHHHHHHHHHHHh-CCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhccccee
Confidence            99999984 4445556676666443 224689999999999987543211 1100          0000000 1123489


Q ss_pred             Eeecc--CCCChHHHHHHHHHHhhh
Q 030289          156 AACAT--SGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       156 ~~Sa~--~~~~i~~~~~~l~~~~~~  178 (180)
                      ++|++  ++.+++++|..+.+.+.+
T Consensus       162 ~~s~~~~~~~~v~~~~~~~~~~~~~  186 (219)
T COG1100         162 ETSAKSLTGPNVNELFKELLRKLLE  186 (219)
T ss_pred             EeecccCCCcCHHHHHHHHHHHHHH
Confidence            99999  999999999999988754

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.93  E-value=3.4e-24  Score=148.26  Aligned_cols=157  Identities=25%  Similarity=0.400  Sum_probs=115.9

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEE----cCeEEEEEEcCCCCCChhhHHhhcccc-CEEEEEEE
Q 030289           18 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWRHYFQNT-HGLIFVVD   92 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~-~~~i~v~d   92 (180)
                      +|+++|++|||||||+++|..+.+....+++......+..    .+..+.+||+||+.+++..+..+++.+ +++|+|+|
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD   81 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD   81 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence            6899999999999999999988755555555544444443    367899999999999998889999999 99999999


Q ss_pred             CCCh-hhHHHHHHHHHHHhccc--ccCCCeEEEEEecCCCCCCCCHhHHHhHhC-------------C------------
Q 030289           93 SNDR-ERIGEAKDELHRMLSED--ELREAVLLVFANKQDLPNAMSVSEVTDKLG-------------L------------  144 (180)
Q Consensus        93 ~~~~-~~~~~~~~~~~~~~~~~--~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~-------------~------------  144 (180)
                      +.+. .++.....++..++...  ..+++|+++++||+|+......+.+.+.+.             +            
T Consensus        82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~~  161 (203)
T cd04105          82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKES  161 (203)
T ss_pred             CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence            9987 67777777777665432  125899999999999876433222111100             0            


Q ss_pred             -------C-ccC--CcceEEEEeeccCCC-ChHHHHHHHHH
Q 030289          145 -------H-SLR--QRRWYIQAACATSGQ-GLYEGLDWLSS  174 (180)
Q Consensus       145 -------~-~~~--~~~~~~~~~Sa~~~~-~i~~~~~~l~~  174 (180)
                             . .+.  ...+.+.++|+..+. |++.+.+|+.+
T Consensus       162 ~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~  202 (203)
T cd04105         162 LGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE  202 (203)
T ss_pred             cccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence                   0 011  235678999998876 69999999864

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>cd01889 SelB_euk SelB subfamily

Probab=99.92  E-value=1.2e-24  Score=149.61  Aligned_cols=157  Identities=19%  Similarity=0.091  Sum_probs=104.2

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCC--------cc--ccccccceeEEEEEEc--------------CeEEEEEEcCCCCC
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGE--------IV--TTIPTIGFNVETVEYK--------------NVSFTVWDVGGQDK   72 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~--------~~--~~~~t~~~~~~~~~~~--------------~~~~~i~D~~G~~~   72 (180)
                      +||+++|++++|||||+++|+...        ..  ....|.+.....+...              +..+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            589999999999999999998631        11  1124555555444443              77999999999865


Q ss_pred             ChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCH----hHHHhHhCCCc--
Q 030289           73 IRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSV----SEVTDKLGLHS--  146 (180)
Q Consensus        73 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~----~~~~~~~~~~~--  146 (180)
                      +..........+|++++|+|+.+.........+.  +...   .+.|+++++||+|+......    +++.+.+....  
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~  155 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEK  155 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHh
Confidence            5444434456789999999998643332222221  1111   25689999999998753322    22222211110  


Q ss_pred             cCCcceEEEEeeccCCCChHHHHHHHHHHhhh
Q 030289          147 LRQRRWYIQAACATSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       147 ~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  178 (180)
                      ....+++++++||++|.|++++++++.+++..
T Consensus       156 ~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~  187 (192)
T cd01889         156 TRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL  187 (192)
T ss_pred             cCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence            11235689999999999999999999988753

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.92  E-value=3.8e-24  Score=147.34  Aligned_cols=146  Identities=23%  Similarity=0.259  Sum_probs=100.4

Q ss_pred             cEEEEEcCCCCChHHHHHHhhc--CCccccc-----------------cccceeEEEEEEcCeEEEEEEcCCCCCChhhH
Q 030289           17 MRILMVGLDAAGKTTILYKLKL--GEIVTTI-----------------PTIGFNVETVEYKNVSFTVWDVGGQDKIRPLW   77 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~--~~~~~~~-----------------~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~   77 (180)
                      -+|+++|++++|||||+++|+.  +.+....                 .|.......+..++..+.+|||||++.+...+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            4899999999999999999986  3322211                 12223334566688999999999999999999


Q ss_pred             HhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC---HhHHHhHhC-C-CccCCcce
Q 030289           78 RHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS---VSEVTDKLG-L-HSLRQRRW  152 (180)
Q Consensus        78 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~---~~~~~~~~~-~-~~~~~~~~  152 (180)
                      ..+++++|++++|+|+++.. ......++.....    .++|+++|+||+|+.....   .+++...+. . ....+.++
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDF  157 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCcc
Confidence            99999999999999998632 2222333333321    3688999999999975322   122222211 0 11233467


Q ss_pred             EEEEeeccCCCChHH
Q 030289          153 YIQAACATSGQGLYE  167 (180)
Q Consensus       153 ~~~~~Sa~~~~~i~~  167 (180)
                      +++++||++|.|+.+
T Consensus       158 ~iv~~Sa~~g~~~~~  172 (194)
T cd01891         158 PVLYASAKNGWASLN  172 (194)
T ss_pred             CEEEeehhccccccc
Confidence            899999999977643

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.92  E-value=6.2e-24  Score=162.51  Aligned_cols=159  Identities=19%  Similarity=0.170  Sum_probs=111.0

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC--cccccc--ccceeEEEEEEcCeEEEEEEcCCCCCChhh-----------HH
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIP--TIGFNVETVEYKNVSFTVWDVGGQDKIRPL-----------WR   78 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~--~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------~~   78 (180)
                      ...++|+++|.+|+|||||+|+|++..  .....+  |.+.....+..++..+.+|||||..+....           ..
T Consensus       170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~  249 (429)
T TIGR03594       170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTL  249 (429)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHH
Confidence            345899999999999999999999876  222222  444444556667789999999997544321           23


Q ss_pred             hhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCC-CCCCHhHHHhHhCCCccCCcceEEEEe
Q 030289           79 HYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP-NAMSVSEVTDKLGLHSLRQRRWYIQAA  157 (180)
Q Consensus        79 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (180)
                      .+++.+|++++|+|++++.+.+.. .++....    ..+.|+++|+||+|+. +....+++...+.........++++++
T Consensus       250 ~~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~----~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~  324 (429)
T TIGR03594       250 KAIERADVVLLVLDATEGITEQDL-RIAGLIL----EAGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFI  324 (429)
T ss_pred             HHHHhCCEEEEEEECCCCccHHHH-HHHHHHH----HcCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEE
Confidence            467899999999999876554433 2222222    2468999999999997 322233444333322222234689999


Q ss_pred             eccCCCChHHHHHHHHHHhh
Q 030289          158 CATSGQGLYEGLDWLSSNVS  177 (180)
Q Consensus       158 Sa~~~~~i~~~~~~l~~~~~  177 (180)
                      ||++|.|++++|+++.+...
T Consensus       325 SA~~g~~v~~l~~~i~~~~~  344 (429)
T TIGR03594       325 SALTGQGVDKLLDAIDEVYE  344 (429)
T ss_pred             eCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999988654

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.92  E-value=2e-24  Score=141.54  Aligned_cols=141  Identities=21%  Similarity=0.265  Sum_probs=100.7

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCC-cccc--ccccceeEEEEEEcCeEEEEEEcCCCCCC------hhhHHhhc--cccC
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGE-IVTT--IPTIGFNVETVEYKNVSFTVWDVGGQDKI------RPLWRHYF--QNTH   85 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~-~~~~--~~t~~~~~~~~~~~~~~~~i~D~~G~~~~------~~~~~~~~--~~~~   85 (180)
                      ++|+++|.|+||||||+|+|++.. ....  ..|++.....+...+..+.++|+||--.+      ......++  .+.|
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D   80 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD   80 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence            589999999999999999999988 2222  33777778888989999999999993222      23344454  4789


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC----CHhHHHhHhCCCccCCcceEEEEeeccC
Q 030289           86 GLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM----SVSEVTDKLGLHSLRQRRWYIQAACATS  161 (180)
Q Consensus        86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  161 (180)
                      ++++|+|+++.+   .......++..    .++|+++++||+|.....    +.+.+.+.+        ++|++++||++
T Consensus        81 ~ii~VvDa~~l~---r~l~l~~ql~e----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~L--------g~pvi~~sa~~  145 (156)
T PF02421_consen   81 LIIVVVDATNLE---RNLYLTLQLLE----LGIPVVVVLNKMDEAERKGIEIDAEKLSERL--------GVPVIPVSART  145 (156)
T ss_dssp             EEEEEEEGGGHH---HHHHHHHHHHH----TTSSEEEEEETHHHHHHTTEEE-HHHHHHHH--------TS-EEEEBTTT
T ss_pred             EEEEECCCCCHH---HHHHHHHHHHH----cCCCEEEEEeCHHHHHHcCCEECHHHHHHHh--------CCCEEEEEeCC
Confidence            999999998643   33333444432    379999999999976532    244455454        45799999999


Q ss_pred             CCChHHHHHHH
Q 030289          162 GQGLYEGLDWL  172 (180)
Q Consensus       162 ~~~i~~~~~~l  172 (180)
                      ++|++++++.|
T Consensus       146 ~~g~~~L~~~I  156 (156)
T PF02421_consen  146 GEGIDELKDAI  156 (156)
T ss_dssp             TBTHHHHHHHH
T ss_pred             CcCHHHHHhhC
Confidence            99999999875

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd01895 EngA2 EngA2 subfamily

Probab=99.92  E-value=2.3e-23  Score=140.60  Aligned_cols=155  Identities=19%  Similarity=0.190  Sum_probs=105.2

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCCc--ccccc--ccceeEEEEEEcCeEEEEEEcCCCCCCh-----------hhHHhh
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNVSFTVWDVGGQDKIR-----------PLWRHY   80 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~-----------~~~~~~   80 (180)
                      .++|+++|++|+|||||+|+|++...  ....+  +.......+...+..+.+|||||.....           ......
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~   81 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA   81 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence            57999999999999999999987652  12222  3333334555677789999999965431           112335


Q ss_pred             ccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC--CCHhHHHhHhCCCccCCcceEEEEee
Q 030289           81 FQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA--MSVSEVTDKLGLHSLRQRRWYIQAAC  158 (180)
Q Consensus        81 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S  158 (180)
                      +.++|++++|+|++++.+.... .+.....    ..+.|+++++||+|+.+.  ...+++.+............+++++|
T Consensus        82 ~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~----~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  156 (174)
T cd01895          82 IERADVVLLVIDATEGITEQDL-RIAGLIL----EEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFIS  156 (174)
T ss_pred             HhhcCeEEEEEeCCCCcchhHH-HHHHHHH----hcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEe
Confidence            6789999999999887654332 2222221    136899999999999765  33333333332221111235899999


Q ss_pred             ccCCCChHHHHHHHHHH
Q 030289          159 ATSGQGLYEGLDWLSSN  175 (180)
Q Consensus       159 a~~~~~i~~~~~~l~~~  175 (180)
                      ++++.|++++++++.+.
T Consensus       157 a~~~~~i~~~~~~l~~~  173 (174)
T cd01895         157 ALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             ccCCCCHHHHHHHHHHh
Confidence            99999999999998764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd01894 EngA1 EngA1 subfamily

Probab=99.92  E-value=9.6e-24  Score=140.42  Aligned_cols=144  Identities=20%  Similarity=0.243  Sum_probs=101.3

Q ss_pred             EEEcCCCCChHHHHHHhhcCC--cccccc--ccceeEEEEEEcCeEEEEEEcCCCCCChh--------hHHhhccccCEE
Q 030289           20 LMVGLDAAGKTTILYKLKLGE--IVTTIP--TIGFNVETVEYKNVSFTVWDVGGQDKIRP--------LWRHYFQNTHGL   87 (180)
Q Consensus        20 ~i~G~~~~GKStli~~l~~~~--~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~~~~   87 (180)
                      +++|.+|+|||||+|+|++..  .....+  |.+.........+..+.+|||||...+..        .+...++++|++
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i   80 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI   80 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence            479999999999999999875  222222  44455566667788999999999887544        344567889999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcce-EEEEeeccCCCChH
Q 030289           88 IFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRW-YIQAACATSGQGLY  166 (180)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~  166 (180)
                      ++|+|+.+..+...  .++...+..   .+.|+++|+||+|+.+.....+....        .+. +++++|++++.|++
T Consensus        81 i~v~d~~~~~~~~~--~~~~~~~~~---~~~piiiv~nK~D~~~~~~~~~~~~~--------~~~~~~~~~Sa~~~~gv~  147 (157)
T cd01894          81 LFVVDGREGLTPAD--EEIAKYLRK---SKKPVILVVNKVDNIKEEDEAAEFYS--------LGFGEPIPISAEHGRGIG  147 (157)
T ss_pred             EEEEeccccCCccH--HHHHHHHHh---cCCCEEEEEECcccCChHHHHHHHHh--------cCCCCeEEEecccCCCHH
Confidence            99999976433222  222222222   35899999999999764322111111        122 58999999999999


Q ss_pred             HHHHHHHHHh
Q 030289          167 EGLDWLSSNV  176 (180)
Q Consensus       167 ~~~~~l~~~~  176 (180)
                      ++++++.+.+
T Consensus       148 ~l~~~l~~~~  157 (157)
T cd01894         148 DLLDAILELL  157 (157)
T ss_pred             HHHHHHHhhC
Confidence            9999998764

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.92  E-value=1.2e-26  Score=150.89  Aligned_cols=161  Identities=15%  Similarity=0.276  Sum_probs=130.9

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEE----EEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE----TVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLI   88 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~----~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   88 (180)
                      +.-+|++|+|..++||||+|+++|.+- ...+..|+++++.    .+..+++...+||++|+++++..+..|++++.+.+
T Consensus        18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v   97 (246)
T KOG4252|consen   18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV   97 (246)
T ss_pred             hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence            457899999999999999999999888 4455667776543    33446778899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289           89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG  168 (180)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (180)
                      +||+.+|+.+|+....|...+...  ...+|.++|-||+|+.++...+.   .+....++..+..++.+|+++..|+.++
T Consensus        98 LVFSTTDr~SFea~~~w~~kv~~e--~~~IPtV~vqNKIDlveds~~~~---~evE~lak~l~~RlyRtSvked~NV~~v  172 (246)
T KOG4252|consen   98 LVFSTTDRYSFEATLEWYNKVQKE--TERIPTVFVQNKIDLVEDSQMDK---GEVEGLAKKLHKRLYRTSVKEDFNVMHV  172 (246)
T ss_pred             EEEecccHHHHHHHHHHHHHHHHH--hccCCeEEeeccchhhHhhhcch---HHHHHHHHHhhhhhhhhhhhhhhhhHHH
Confidence            999999999999999999998665  46799999999999987532211   1111122334556899999999999999


Q ss_pred             HHHHHHHhhhc
Q 030289          169 LDWLSSNVSAK  179 (180)
Q Consensus       169 ~~~l~~~~~~~  179 (180)
                      |.++++.+.++
T Consensus       173 F~YLaeK~~q~  183 (246)
T KOG4252|consen  173 FAYLAEKLTQQ  183 (246)
T ss_pred             HHHHHHHHHHH
Confidence            99999987653

>PTZ00099 rab6; Provisional

Probab=99.92  E-value=5.1e-24  Score=144.16  Aligned_cols=131  Identities=18%  Similarity=0.342  Sum_probs=104.4

Q ss_pred             cccccccceeEEE--EEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCC
Q 030289           42 VTTIPTIGFNVET--VEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELRE  117 (180)
Q Consensus        42 ~~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  117 (180)
                      ..+.||++..+..  +..  +.+++.+|||||++++...+..+++++|++++|||++++++++.+..|+..+.... ...
T Consensus         7 ~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~-~~~   85 (176)
T PTZ00099          7 NNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER-GKD   85 (176)
T ss_pred             CCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCC
Confidence            4567888876643  333  45889999999999999999999999999999999999999999999999887553 257


Q ss_pred             CeEEEEEecCCCCCCC--CHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHHhhh
Q 030289          118 AVLLVFANKQDLPNAM--SVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       118 ~~iiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  178 (180)
                      .|+++|+||+|+.+..  ..++...     .....+..+++|||++|.||+++|+++++.+.+
T Consensus        86 ~piilVgNK~DL~~~~~v~~~e~~~-----~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~  143 (176)
T PTZ00099         86 VIIALVGNKTDLGDLRKVTYEEGMQ-----KAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN  143 (176)
T ss_pred             CeEEEEEECcccccccCCCHHHHHH-----HHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            8999999999996532  2222221     122335578999999999999999999998865

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.92  E-value=1.6e-23  Score=161.34  Aligned_cols=152  Identities=20%  Similarity=0.238  Sum_probs=105.9

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCCc--ccccc--ccceeEEEEEEcCeEEEEEEcCCCCC--------ChhhHHhhcc
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNVSFTVWDVGGQDK--------IRPLWRHYFQ   82 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~   82 (180)
                      ...+|+|+|.+|||||||+|+|++...  ....+  |.+.....+...+..+.+|||||.+.        +...+..+++
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~  116 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR  116 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence            347999999999999999999998762  23333  33344555566788899999999763        2334566788


Q ss_pred             ccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCC
Q 030289           83 NTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSG  162 (180)
Q Consensus        83 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  162 (180)
                      .+|++++|+|+++..+... ..+. ..+..   .++|+++|+||+|+.....  +........    .+ ..+++||++|
T Consensus       117 ~aD~il~VvD~~~~~s~~~-~~i~-~~l~~---~~~piilV~NK~Dl~~~~~--~~~~~~~~g----~~-~~~~iSA~~g  184 (472)
T PRK03003        117 TADAVLFVVDATVGATATD-EAVA-RVLRR---SGKPVILAANKVDDERGEA--DAAALWSLG----LG-EPHPVSALHG  184 (472)
T ss_pred             hCCEEEEEEECCCCCCHHH-HHHH-HHHHH---cCCCEEEEEECccCCccch--hhHHHHhcC----CC-CeEEEEcCCC
Confidence            9999999999987654322 2222 22222   4789999999999864321  111111111    11 2469999999


Q ss_pred             CChHHHHHHHHHHhhh
Q 030289          163 QGLYEGLDWLSSNVSA  178 (180)
Q Consensus       163 ~~i~~~~~~l~~~~~~  178 (180)
                      .|++++++++.+.+.+
T Consensus       185 ~gi~eL~~~i~~~l~~  200 (472)
T PRK03003        185 RGVGDLLDAVLAALPE  200 (472)
T ss_pred             CCcHHHHHHHHhhccc
Confidence            9999999999988754

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.91  E-value=1.9e-23  Score=159.17  Aligned_cols=159  Identities=26%  Similarity=0.325  Sum_probs=111.8

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC--ccc-cccccceeEEEEEEcCeEEEEEEcCCCCC----Chhh---HHhhccccC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE--IVT-TIPTIGFNVETVEYKNVSFTVWDVGGQDK----IRPL---WRHYFQNTH   85 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~--~~~-~~~t~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~---~~~~~~~~~   85 (180)
                      -..|+++|.|+||||||+|+|++.+  ... ...|..+....+...+.++.+||+||...    ...+   ....+.++|
T Consensus       159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhierad  238 (500)
T PRK12296        159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCA  238 (500)
T ss_pred             cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcC
Confidence            4579999999999999999999766  222 23577788888888889999999999532    1111   233457899


Q ss_pred             EEEEEEECCC----hhhHHHHHHHHHHHhccc----------ccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcc
Q 030289           86 GLIFVVDSND----RERIGEAKDELHRMLSED----------ELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRR  151 (180)
Q Consensus        86 ~~i~v~d~~~----~~~~~~~~~~~~~~~~~~----------~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                      ++++|+|+++    ++.++....+...+....          .....|.++|+||+|+.+.....+....    .+...+
T Consensus       239 vLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~----~l~~~g  314 (500)
T PRK12296        239 VLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRP----ELEARG  314 (500)
T ss_pred             EEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHH----HHHHcC
Confidence            9999999975    234444444333332221          2346899999999999764333222211    112235


Q ss_pred             eEEEEeeccCCCChHHHHHHHHHHhhh
Q 030289          152 WYIQAACATSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       152 ~~~~~~Sa~~~~~i~~~~~~l~~~~~~  178 (180)
                      ++++++||+++.|+++++.++.+.+.+
T Consensus       315 ~~Vf~ISA~tgeGLdEL~~~L~ell~~  341 (500)
T PRK12296        315 WPVFEVSAASREGLRELSFALAELVEE  341 (500)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            689999999999999999999988754

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.91  E-value=5.9e-24  Score=141.66  Aligned_cols=142  Identities=22%  Similarity=0.173  Sum_probs=95.1

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCCh----hhHHhhccccCEEEEEEEC
Q 030289           18 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIR----PLWRHYFQNTHGLIFVVDS   93 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~----~~~~~~~~~~~~~i~v~d~   93 (180)
                      +|+++|++|+|||||+|++.+.... ..+|.++.+     ...  .+|||||.....    ......++++|++++|+|+
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~-~~~~~~v~~-----~~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~   74 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTL-ARKTQAVEF-----NDK--GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGA   74 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCcc-CccceEEEE-----CCC--CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeC
Confidence            7999999999999999998865421 122322222     111  279999963222    2223347899999999999


Q ss_pred             CChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHH
Q 030289           94 NDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLS  173 (180)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  173 (180)
                      ++.++.  ...|+..+     ..+.|+++++||+|+.+ ...+++.+......   ...+++++||+++.|++++|+++.
T Consensus        75 ~~~~s~--~~~~~~~~-----~~~~~ii~v~nK~Dl~~-~~~~~~~~~~~~~~---~~~p~~~~Sa~~g~gi~~l~~~l~  143 (158)
T PRK15467         75 NDPESR--LPAGLLDI-----GVSKRQIAVISKTDMPD-ADVAATRKLLLETG---FEEPIFELNSHDPQSVQQLVDYLA  143 (158)
T ss_pred             CCcccc--cCHHHHhc-----cCCCCeEEEEEccccCc-ccHHHHHHHHHHcC---CCCCEEEEECCCccCHHHHHHHHH
Confidence            877654  33444443     13578999999999865 33333332211111   124899999999999999999998


Q ss_pred             HHhhh
Q 030289          174 SNVSA  178 (180)
Q Consensus       174 ~~~~~  178 (180)
                      +.+.+
T Consensus       144 ~~~~~  148 (158)
T PRK15467        144 SLTKQ  148 (158)
T ss_pred             Hhchh
Confidence            87753

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.91  E-value=8.4e-23  Score=153.78  Aligned_cols=153  Identities=26%  Similarity=0.284  Sum_probs=109.8

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCCc--ccc-ccccceeEEEEEEc-CeEEEEEEcCCCCC----ChhhHHh---hccccCE
Q 030289           18 RILMVGLDAAGKTTILYKLKLGEI--VTT-IPTIGFNVETVEYK-NVSFTVWDVGGQDK----IRPLWRH---YFQNTHG   86 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~~--~~~-~~t~~~~~~~~~~~-~~~~~i~D~~G~~~----~~~~~~~---~~~~~~~   86 (180)
                      .|+++|.|+||||||+|+|++.+.  ..+ ..|..+....+... +..+.+||+||...    ...+...   .+.++++
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~l  239 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRV  239 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCE
Confidence            799999999999999999998762  222 34666777777775 78999999999642    2223333   3456999


Q ss_pred             EEEEEECCCh---hhHHHHHHHHHHHhccc-ccCCCeEEEEEecCCCCCCCC-HhHHHhHhCCCccCCcceEEEEeeccC
Q 030289           87 LIFVVDSNDR---ERIGEAKDELHRMLSED-ELREAVLLVFANKQDLPNAMS-VSEVTDKLGLHSLRQRRWYIQAACATS  161 (180)
Q Consensus        87 ~i~v~d~~~~---~~~~~~~~~~~~~~~~~-~~~~~~iiiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~  161 (180)
                      +++|+|+++.   ++++....|...+.... ...++|+++|+||+|+..... .+++.+.+.        .+++++||++
T Consensus       240 lI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~--------~~i~~iSA~t  311 (424)
T PRK12297        240 IVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEKLG--------PKVFPISALT  311 (424)
T ss_pred             EEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHHHhC--------CcEEEEeCCC
Confidence            9999999754   56666666655554332 234789999999999853211 222222222        4799999999


Q ss_pred             CCChHHHHHHHHHHhhh
Q 030289          162 GQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       162 ~~~i~~~~~~l~~~~~~  178 (180)
                      +.|++++++++.+.+.+
T Consensus       312 geGI~eL~~~L~~~l~~  328 (424)
T PRK12297        312 GQGLDELLYAVAELLEE  328 (424)
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999987754

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.91  E-value=1.8e-23  Score=144.19  Aligned_cols=165  Identities=18%  Similarity=0.162  Sum_probs=107.1

Q ss_pred             HhhhcccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEE-EEEcCeEEEEEEcCCCC----------CChh
Q 030289            8 LKMLFARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVET-VEYKNVSFTVWDVGGQD----------KIRP   75 (180)
Q Consensus         8 ~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~-~~~~~~~~~i~D~~G~~----------~~~~   75 (180)
                      +++.++....+|+++|++|||||||+|+|++.+ ...+.++.+..... +...+.++.+|||||..          .+..
T Consensus        16 ~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~   95 (196)
T PRK00454         16 LEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQK   95 (196)
T ss_pred             HhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcCCCchHHHHHHH
Confidence            356677889999999999999999999999875 33434444322211 11124789999999953          2233


Q ss_pred             hHHhhcccc---CEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcce
Q 030289           76 LWRHYFQNT---HGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRW  152 (180)
Q Consensus        76 ~~~~~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  152 (180)
                      ....+++.+   +++++++|..++....  ..++...+..   .+.|+++++||+|+.+....+....... ..+.....
T Consensus        96 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~--~~~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~-~~l~~~~~  169 (196)
T PRK00454         96 LIEEYLRTRENLKGVVLLIDSRHPLKEL--DLQMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVR-KALKFGDD  169 (196)
T ss_pred             HHHHHHHhCccceEEEEEEecCCCCCHH--HHHHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHH-HHHHhcCC
Confidence            444555544   6788889887643322  1222222222   3678999999999976433332222111 11111145


Q ss_pred             EEEEeeccCCCChHHHHHHHHHHhhh
Q 030289          153 YIQAACATSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       153 ~~~~~Sa~~~~~i~~~~~~l~~~~~~  178 (180)
                      +++++|++++.|++++++.+.+.+.+
T Consensus       170 ~~~~~Sa~~~~gi~~l~~~i~~~~~~  195 (196)
T PRK00454        170 EVILFSSLKKQGIDELRAAIAKWLAE  195 (196)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            79999999999999999999988765

>cd04163 Era Era subfamily

Probab=99.91  E-value=8.5e-23  Score=136.89  Aligned_cols=154  Identities=20%  Similarity=0.180  Sum_probs=103.6

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCCccc--c-cc-ccceeEEEEEEcCeEEEEEEcCCCCCChh--------hHHhhcc
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGEIVT--T-IP-TIGFNVETVEYKNVSFTVWDVGGQDKIRP--------LWRHYFQ   82 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~--~-~~-t~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~   82 (180)
                      +..+|+++|++|+|||||+|+|++.+...  . .. +.......+...+..+.+|||||......        .....+.
T Consensus         2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   81 (168)
T cd04163           2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK   81 (168)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999876221  1 11 22222233444668899999999765432        2344577


Q ss_pred             ccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC-CCCHhHHHhHhCCCccCCcceEEEEeeccC
Q 030289           83 NTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN-AMSVSEVTDKLGLHSLRQRRWYIQAACATS  161 (180)
Q Consensus        83 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  161 (180)
                      ++|++++|+|++++.  .....++...+..   .+.|+++|+||+|+.. .....+........   ....+++++|+++
T Consensus        82 ~~d~i~~v~d~~~~~--~~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~  153 (168)
T cd04163          82 DVDLVLFVVDASEPI--GEGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKEL---GPFAEIFPISALK  153 (168)
T ss_pred             hCCEEEEEEECCCcc--CchHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhc---cCCCceEEEEecc
Confidence            899999999998762  2222333332222   2578999999999974 33333333333221   1134789999999


Q ss_pred             CCChHHHHHHHHHHh
Q 030289          162 GQGLYEGLDWLSSNV  176 (180)
Q Consensus       162 ~~~i~~~~~~l~~~~  176 (180)
                      +.+++++++.+.+.+
T Consensus       154 ~~~~~~l~~~l~~~~  168 (168)
T cd04163         154 GENVDELLEEIVKYL  168 (168)
T ss_pred             CCChHHHHHHHHhhC
Confidence            999999999998753

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.91  E-value=1.3e-23  Score=145.47  Aligned_cols=159  Identities=14%  Similarity=0.094  Sum_probs=101.7

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCC----cc--ccccccceeEEEEEEc---------------------------C----
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGE----IV--TTIPTIGFNVETVEYK---------------------------N----   59 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~----~~--~~~~t~~~~~~~~~~~---------------------------~----   59 (180)
                      ++|+++|+.|+|||||+..+.+..    ..  ....|....+..+...                           +    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            489999999999999999997542    11  1111222222211111                           2    


Q ss_pred             --eEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhH
Q 030289           60 --VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSE  137 (180)
Q Consensus        60 --~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~  137 (180)
                        ..+.+|||||++.+...+...+..+|++++|+|++++.........+..+...   ...|+++|+||+|+.+.....+
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~---~~~~iiivvNK~Dl~~~~~~~~  157 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM---GLKHIIIVQNKIDLVKEEQALE  157 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc---CCCcEEEEEEchhccCHHHHHH
Confidence              67999999999988877888888899999999998632111112222222111   2357999999999976332222


Q ss_pred             HHhHhCC--CccCCcceEEEEeeccCCCChHHHHHHHHHHhhh
Q 030289          138 VTDKLGL--HSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       138 ~~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  178 (180)
                      ..+....  ........+++++||++|+|++++++++.+.+.+
T Consensus       158 ~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~  200 (203)
T cd01888         158 NYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT  200 (203)
T ss_pred             HHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence            1111110  0001124679999999999999999999987754

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.90  E-value=1.5e-22  Score=155.09  Aligned_cols=159  Identities=19%  Similarity=0.185  Sum_probs=110.2

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC--cccccc--ccceeEEEEEEcCeEEEEEEcCCCCCChh-----------hHH
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIP--TIGFNVETVEYKNVSFTVWDVGGQDKIRP-----------LWR   78 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~--~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----------~~~   78 (180)
                      ...++|+++|.+|+|||||+|+|++..  .....+  |.......+...+..+.+|||||..+...           ...
T Consensus       171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~  250 (435)
T PRK00093        171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL  250 (435)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence            357999999999999999999999766  223233  33333344556788899999999643211           123


Q ss_pred             hhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEee
Q 030289           79 HYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAAC  158 (180)
Q Consensus        79 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  158 (180)
                      .+++.+|++++|+|++++.+.+.. ..+....    ..+.|+++++||+|+.++....++...+.........++++++|
T Consensus       251 ~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~----~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~S  325 (435)
T PRK00093        251 KAIERADVVLLVIDATEGITEQDL-RIAGLAL----EAGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFIS  325 (435)
T ss_pred             HHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHH----HcCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEe
Confidence            467889999999999876554333 2222222    24689999999999985433444444433222223456899999


Q ss_pred             ccCCCChHHHHHHHHHHhh
Q 030289          159 ATSGQGLYEGLDWLSSNVS  177 (180)
Q Consensus       159 a~~~~~i~~~~~~l~~~~~  177 (180)
                      |++|.|++++++.+.+...
T Consensus       326 A~~~~gv~~l~~~i~~~~~  344 (435)
T PRK00093        326 ALTGQGVDKLLEAIDEAYE  344 (435)
T ss_pred             CCCCCCHHHHHHHHHHHHH
Confidence            9999999999999887654

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.90  E-value=1.6e-22  Score=132.66  Aligned_cols=159  Identities=24%  Similarity=0.333  Sum_probs=128.9

Q ss_pred             hhcccCccEEEEEcCCCCChHHHHHHhhcCCccc---------c----ccccceeEEEEEEcC-eEEEEEEcCCCCCChh
Q 030289           10 MLFARKEMRILMVGLDAAGKTTILYKLKLGEIVT---------T----IPTIGFNVETVEYKN-VSFTVWDVGGQDKIRP   75 (180)
Q Consensus        10 ~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~---------~----~~t~~~~~~~~~~~~-~~~~i~D~~G~~~~~~   75 (180)
                      .+.+....||+|+|+.++||||++.+++......         +    ..|+..++......+ ..+.+++||||++++.
T Consensus         4 ~~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~f   83 (187)
T COG2229           4 AANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKF   83 (187)
T ss_pred             ccccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHH
Confidence            4567889999999999999999999998766211         1    125556777777754 8999999999999999


Q ss_pred             hHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEE
Q 030289           76 LWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQ  155 (180)
Q Consensus        76 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (180)
                      +|..+.+++.++++++|.+.+..+  -...+..+..+..  .+|+++.+||.|+.+....+++.+.+....   .+.+++
T Consensus        84 m~~~l~~ga~gaivlVDss~~~~~--~a~~ii~f~~~~~--~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~---~~~~vi  156 (187)
T COG2229          84 MWEILSRGAVGAIVLVDSSRPITF--HAEEIIDFLTSRN--PIPVVVAINKQDLFDALPPEKIREALKLEL---LSVPVI  156 (187)
T ss_pred             HHHHHhCCcceEEEEEecCCCcch--HHHHHHHHHhhcc--CCCEEEEeeccccCCCCCHHHHHHHHHhcc---CCCcee
Confidence            999999999999999999988776  3333444444422  299999999999999988988888776553   457899


Q ss_pred             EeeccCCCChHHHHHHHHHH
Q 030289          156 AACATSGQGLYEGLDWLSSN  175 (180)
Q Consensus       156 ~~Sa~~~~~i~~~~~~l~~~  175 (180)
                      +.++.++++..+.++.+...
T Consensus       157 ~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         157 EIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             eeecccchhHHHHHHHHHhh
Confidence            99999999999998888765

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.90  E-value=1.5e-23  Score=143.63  Aligned_cols=157  Identities=24%  Similarity=0.220  Sum_probs=112.4

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCC--cc-------------------ccccccceeEEEEE--EcCeEEEEEEcCCCC
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGE--IV-------------------TTIPTIGFNVETVE--YKNVSFTVWDVGGQD   71 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~--~~-------------------~~~~t~~~~~~~~~--~~~~~~~i~D~~G~~   71 (180)
                      +..+|+++|+.++|||||+++|+...  ..                   ....|.......+.  .....+.++|+||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            46799999999999999999997433  10                   11236667777777  789999999999999


Q ss_pred             CChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhH----HHhHh-CCCc
Q 030289           72 KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSE----VTDKL-GLHS  146 (180)
Q Consensus        72 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~----~~~~~-~~~~  146 (180)
                      .|.......+..+|++++|+|+.+.-. ......+... .   ..++|+++|+||+|+.. ....+    +...+ ....
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~-~~~~~~l~~~-~---~~~~p~ivvlNK~D~~~-~~~~~~~~~~~~~l~~~~~  155 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQ-PQTEEHLKIL-R---ELGIPIIVVLNKMDLIE-KELEEIIEEIKEKLLKEYG  155 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBST-HHHHHHHHHH-H---HTT-SEEEEEETCTSSH-HHHHHHHHHHHHHHHHHTT
T ss_pred             ceeecccceecccccceeeeecccccc-cccccccccc-c---ccccceEEeeeeccchh-hhHHHHHHHHHHHhccccc
Confidence            988888888999999999999985532 1222223322 2   24788999999999983 22222    22122 1111


Q ss_pred             cCC-cceEEEEeeccCCCChHHHHHHHHHHhh
Q 030289          147 LRQ-RRWYIQAACATSGQGLYEGLDWLSSNVS  177 (180)
Q Consensus       147 ~~~-~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  177 (180)
                      ... ..++++++||.+|.|++++++.+.+.+.
T Consensus       156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  156 ENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             cCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            121 3579999999999999999999998764

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.90  E-value=1.2e-23  Score=133.97  Aligned_cols=109  Identities=26%  Similarity=0.456  Sum_probs=80.7

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCCcc---cccc----ccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289           18 RILMVGLDAAGKTTILYKLKLGEIV---TTIP----TIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV   90 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~~~---~~~~----t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (180)
                      ||+|+|++|||||||+++|++....   ...+    +.......+......+.+||++|++.+...+..++.++|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999988744   1112    22222223333445699999999998888777779999999999


Q ss_pred             EECCChhhHHHHHHH---HHHHhcccccCCCeEEEEEecCC
Q 030289           91 VDSNDRERIGEAKDE---LHRMLSEDELREAVLLVFANKQD  128 (180)
Q Consensus        91 ~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~iiiv~nK~D  128 (180)
                      ||++++++++.+..+   +..+...  ..++|+++|+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence            999999999887554   4444322  35699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK11058 GTPase HflX; Provisional

Probab=99.90  E-value=3.6e-22  Score=151.11  Aligned_cols=153  Identities=18%  Similarity=0.182  Sum_probs=106.1

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCC-cc--ccccccceeEEEEEEcCe-EEEEEEcCCCCCC--hhhH------Hhhcccc
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGE-IV--TTIPTIGFNVETVEYKNV-SFTVWDVGGQDKI--RPLW------RHYFQNT   84 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~-~~--~~~~t~~~~~~~~~~~~~-~~~i~D~~G~~~~--~~~~------~~~~~~~   84 (180)
                      .+|+++|.+|||||||+|+|++.. ..  ....|.+.....+...+. .+.+|||+|..+.  ...+      ...++++
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~A  277 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQA  277 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcC
Confidence            689999999999999999999866 22  224567766666666554 8899999997332  2222      2345789


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceE-EEEeeccCCC
Q 030289           85 HGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWY-IQAACATSGQ  163 (180)
Q Consensus        85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~  163 (180)
                      |++++|+|++++.+.+....|...+ ......++|+++|+||+|+.+.... .....       ..+.+ ++++||++|.
T Consensus       278 DlIL~VvDaS~~~~~e~l~~v~~iL-~el~~~~~pvIiV~NKiDL~~~~~~-~~~~~-------~~~~~~~v~ISAktG~  348 (426)
T PRK11058        278 TLLLHVVDAADVRVQENIEAVNTVL-EEIDAHEIPTLLVMNKIDMLDDFEP-RIDRD-------EENKPIRVWLSAQTGA  348 (426)
T ss_pred             CEEEEEEeCCCccHHHHHHHHHHHH-HHhccCCCCEEEEEEcccCCCchhH-HHHHH-------hcCCCceEEEeCCCCC
Confidence            9999999999887666554332222 1112246899999999998653211 11111       01222 5889999999


Q ss_pred             ChHHHHHHHHHHhhh
Q 030289          164 GLYEGLDWLSSNVSA  178 (180)
Q Consensus       164 ~i~~~~~~l~~~~~~  178 (180)
                      |++++++++.+.+..
T Consensus       349 GIdeL~e~I~~~l~~  363 (426)
T PRK11058        349 GIPLLFQALTERLSG  363 (426)
T ss_pred             CHHHHHHHHHHHhhh
Confidence            999999999988753

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.90  E-value=2e-22  Score=150.97  Aligned_cols=159  Identities=19%  Similarity=0.168  Sum_probs=111.8

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCC-cccc--ccccceeEEEEEEcC-eEEEEEEcCCCCCC-------hhhHHhhccccCE
Q 030289           18 RILMVGLDAAGKTTILYKLKLGE-IVTT--IPTIGFNVETVEYKN-VSFTVWDVGGQDKI-------RPLWRHYFQNTHG   86 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~-~~~~--~~t~~~~~~~~~~~~-~~~~i~D~~G~~~~-------~~~~~~~~~~~~~   86 (180)
                      .|+|+|.||||||||+|+|++.+ ....  ..|.......+...+ ..+.++||||..+-       .......+.++|+
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radv  240 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRV  240 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCE
Confidence            69999999999999999999766 2222  246667777777764 56999999996532       1122345778999


Q ss_pred             EEEEEECC---ChhhHHHHHHHHHHHhccc-ccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCC
Q 030289           87 LIFVVDSN---DRERIGEAKDELHRMLSED-ELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSG  162 (180)
Q Consensus        87 ~i~v~d~~---~~~~~~~~~~~~~~~~~~~-~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  162 (180)
                      +++|+|++   +.+.++....|+..+.... ...+.|+++|+||+|+.......+....+....  ....+++++||+++
T Consensus       241 lL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~--~~~~~Vi~ISA~tg  318 (390)
T PRK12298        241 LLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEAL--GWEGPVYLISAASG  318 (390)
T ss_pred             EEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHh--CCCCCEEEEECCCC
Confidence            99999987   4556666666666654431 224689999999999976443333222221110  11125899999999


Q ss_pred             CChHHHHHHHHHHhhh
Q 030289          163 QGLYEGLDWLSSNVSA  178 (180)
Q Consensus       163 ~~i~~~~~~l~~~~~~  178 (180)
                      .|++++++.+.+.+.+
T Consensus       319 ~GIdeLl~~I~~~L~~  334 (390)
T PRK12298        319 LGVKELCWDLMTFIEE  334 (390)
T ss_pred             cCHHHHHHHHHHHhhh
Confidence            9999999999988764

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.90  E-value=3.5e-23  Score=140.82  Aligned_cols=151  Identities=20%  Similarity=0.264  Sum_probs=96.7

Q ss_pred             HHhhhcccCccEEEEEcCCCCChHHHHHHhhcCC-cccccccccee--EEEEEEcCeEEEEEEcCCCCC----------C
Q 030289            7 RLKMLFARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFN--VETVEYKNVSFTVWDVGGQDK----------I   73 (180)
Q Consensus         7 ~~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~--~~~~~~~~~~~~i~D~~G~~~----------~   73 (180)
                      ++++..+.+.++|+++|++|+|||||+|++++.. ...+.++.+..  ...+... ..+.+|||||...          +
T Consensus         9 ~~~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~   87 (179)
T TIGR03598         9 KLKQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEKEKW   87 (179)
T ss_pred             cHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHHHHH
Confidence            4566777999999999999999999999999875 33333333322  1122222 3799999999532          2


Q ss_pred             hhhHHhhcc---ccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCH----hHHHhHhCCCc
Q 030289           74 RPLWRHYFQ---NTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSV----SEVTDKLGLHS  146 (180)
Q Consensus        74 ~~~~~~~~~---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~----~~~~~~~~~~~  146 (180)
                      ......+++   .++++++|+|++++-+....  .+...+..   .+.|+++++||+|+..+...    +++.+.+... 
T Consensus        88 ~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~-  161 (179)
T TIGR03598        88 QKLIEEYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKD-  161 (179)
T ss_pred             HHHHHHHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc-
Confidence            233344554   35899999999864332222  22222222   46899999999999754322    2233332221 


Q ss_pred             cCCcceEEEEeeccCCCChH
Q 030289          147 LRQRRWYIQAACATSGQGLY  166 (180)
Q Consensus       147 ~~~~~~~~~~~Sa~~~~~i~  166 (180)
                        .....++++||++|+|++
T Consensus       162 --~~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       162 --ADDPSVQLFSSLKKTGID  179 (179)
T ss_pred             --cCCCceEEEECCCCCCCC
Confidence              123479999999999984

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.90  E-value=1.7e-22  Score=162.17  Aligned_cols=160  Identities=17%  Similarity=0.150  Sum_probs=112.1

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC--cccccc--ccceeEEEEEEcCeEEEEEEcCCCCC----------Chhh-HH
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIP--TIGFNVETVEYKNVSFTVWDVGGQDK----------IRPL-WR   78 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~--~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~-~~   78 (180)
                      ....||+++|.+|||||||+|+|++.+  .....+  |.+.....+..++..+.+|||||..+          +... ..
T Consensus       448 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~  527 (712)
T PRK09518        448 SGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQ  527 (712)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHH
Confidence            346899999999999999999999876  233333  44444555667888899999999532          1111 23


Q ss_pred             hhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEee
Q 030289           79 HYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAAC  158 (180)
Q Consensus        79 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  158 (180)
                      .+++.+|++++|+|+++..+.+... ++..+..    .++|+++|+||+|+.+....+.+..............+++++|
T Consensus       528 ~~i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iS  602 (712)
T PRK09518        528 AAIERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLS  602 (712)
T ss_pred             HHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEE
Confidence            4568899999999999876665543 3333322    4689999999999976433333333222211112235789999


Q ss_pred             ccCCCChHHHHHHHHHHhhh
Q 030289          159 ATSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       159 a~~~~~i~~~~~~l~~~~~~  178 (180)
                      |++|.|++++++.+.+.+.+
T Consensus       603 Aktg~gv~~L~~~i~~~~~~  622 (712)
T PRK09518        603 AKTGWHTNRLAPAMQEALES  622 (712)
T ss_pred             CCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999988764

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.90  E-value=3.3e-22  Score=156.30  Aligned_cols=157  Identities=19%  Similarity=0.221  Sum_probs=110.7

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhhcCCcccc-c--cccceeEEEEEEcCe-EEEEEEcCCCCCChhhHHhhccccCEE
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLKLGEIVTT-I--PTIGFNVETVEYKNV-SFTVWDVGGQDKIRPLWRHYFQNTHGL   87 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~-~--~t~~~~~~~~~~~~~-~~~i~D~~G~~~~~~~~~~~~~~~~~~   87 (180)
                      +..+..+|+++|++++|||||+++|.+...... .  .|.......+...+. .+.+|||||++.|..++...+..+|++
T Consensus        83 ~~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDia  162 (587)
T TIGR00487        83 LVERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIV  162 (587)
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEE
Confidence            456778999999999999999999988763332 2  244444455555444 899999999999999999899999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCcc----CCcceEEEEeeccCCC
Q 030289           88 IFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSL----RQRRWYIQAACATSGQ  163 (180)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~  163 (180)
                      ++|+|+++...-+.. ..+...    ...++|+++++||+|+... ..+++...+.....    .....+++++||++|.
T Consensus       163 ILVVda~dgv~~qT~-e~i~~~----~~~~vPiIVviNKiDl~~~-~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGe  236 (587)
T TIGR00487       163 VLVVAADDGVMPQTI-EAISHA----KAANVPIIVAINKIDKPEA-NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGD  236 (587)
T ss_pred             EEEEECCCCCCHhHH-HHHHHH----HHcCCCEEEEEECcccccC-CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCC
Confidence            999999864221222 222221    1247899999999999652 33333333211111    1123579999999999


Q ss_pred             ChHHHHHHHHH
Q 030289          164 GLYEGLDWLSS  174 (180)
Q Consensus       164 ~i~~~~~~l~~  174 (180)
                      |++++++++..
T Consensus       237 GI~eLl~~I~~  247 (587)
T TIGR00487       237 GIDELLDMILL  247 (587)
T ss_pred             ChHHHHHhhhh
Confidence            99999999864

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.90  E-value=2.1e-22  Score=154.30  Aligned_cols=146  Identities=22%  Similarity=0.284  Sum_probs=103.9

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCCc--ccccc--ccceeEEEEEEcCeEEEEEEcCCCCC--------ChhhHHhhcccc
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNVSFTVWDVGGQDK--------IRPLWRHYFQNT   84 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~~~   84 (180)
                      ++|+++|.+|||||||+|+|.+.+.  ....+  |.+..+..+...+..+.+|||||...        +......++.++
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a   81 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA   81 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence            5899999999999999999998762  23233  45566667777889999999999876        233355677899


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcce-EEEEeeccCCC
Q 030289           85 HGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRW-YIQAACATSGQ  163 (180)
Q Consensus        85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  163 (180)
                      |++++|+|+.+..+.  ...++..++..   .+.|+++|+||+|..+..  ....+...      .+. .++++||++|.
T Consensus        82 d~il~vvd~~~~~~~--~~~~~~~~l~~---~~~piilv~NK~D~~~~~--~~~~~~~~------lg~~~~~~iSa~~g~  148 (435)
T PRK00093         82 DVILFVVDGRAGLTP--ADEEIAKILRK---SNKPVILVVNKVDGPDEE--ADAYEFYS------LGLGEPYPISAEHGR  148 (435)
T ss_pred             CEEEEEEECCCCCCH--HHHHHHHHHHH---cCCcEEEEEECccCccch--hhHHHHHh------cCCCCCEEEEeeCCC
Confidence            999999999864332  22222233322   368999999999975421  11111111      122 37999999999


Q ss_pred             ChHHHHHHHHHH
Q 030289          164 GLYEGLDWLSSN  175 (180)
Q Consensus       164 ~i~~~~~~l~~~  175 (180)
                      |++++++.+.+.
T Consensus       149 gv~~l~~~I~~~  160 (435)
T PRK00093        149 GIGDLLDAILEE  160 (435)
T ss_pred             CHHHHHHHHHhh
Confidence            999999999873

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.90  E-value=2.7e-22  Score=157.44  Aligned_cols=153  Identities=19%  Similarity=0.202  Sum_probs=108.9

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC--cc------cc----------ccccceeEEEEEE-----cCeEEEEEEcCCCCC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE--IV------TT----------IPTIGFNVETVEY-----KNVSFTVWDVGGQDK   72 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~--~~------~~----------~~t~~~~~~~~~~-----~~~~~~i~D~~G~~~   72 (180)
                      .-|++++|+.++|||||+++|+...  ..      .+          ..|+......+.+     ..+.+.+|||||+..
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            3489999999999999999998642  10      11          1122222222322     237899999999999


Q ss_pred             ChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC---HhHHHhHhCCCccCC
Q 030289           73 IRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS---VSEVTDKLGLHSLRQ  149 (180)
Q Consensus        73 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~---~~~~~~~~~~~~~~~  149 (180)
                      |...+..++..+|++++|+|+++..+.+....|.... .    .++|+++|+||+|+.....   .+++.+.++..    
T Consensus        83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~----  153 (595)
T TIGR01393        83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----NDLEIIPVINKIDLPSADPERVKKEIEEVIGLD----  153 (595)
T ss_pred             HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cCCCEEEEEECcCCCccCHHHHHHHHHHHhCCC----
Confidence            9999999999999999999999866655555554433 1    3678999999999865321   12333332221    


Q ss_pred             cceEEEEeeccCCCChHHHHHHHHHHhhh
Q 030289          150 RRWYIQAACATSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       150 ~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  178 (180)
                       ...++++||++|.|++++++++.+.+..
T Consensus       154 -~~~vi~vSAktG~GI~~Lle~I~~~lp~  181 (595)
T TIGR01393       154 -ASEAILASAKTGIGIEEILEAIVKRVPP  181 (595)
T ss_pred             -cceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence             1258999999999999999999987653

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.90  E-value=2.1e-22  Score=154.15  Aligned_cols=148  Identities=22%  Similarity=0.293  Sum_probs=105.9

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCC--cccccc--ccceeEEEEEEcCeEEEEEEcCCCCC--------ChhhHHhhccccC
Q 030289           18 RILMVGLDAAGKTTILYKLKLGE--IVTTIP--TIGFNVETVEYKNVSFTVWDVGGQDK--------IRPLWRHYFQNTH   85 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~--~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~~~~   85 (180)
                      +|+++|.+|||||||+|+|.+.+  .....+  |.+..+..+...+..+.+|||||...        +......+++.+|
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad   80 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD   80 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence            58999999999999999999876  222223  45566677777888999999999632        3344666788999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcce-EEEEeeccCCCC
Q 030289           86 GLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRW-YIQAACATSGQG  164 (180)
Q Consensus        86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~  164 (180)
                      ++++|+|+.+..+  .....+..++..   .+.|+++|+||+|+............        .+. +++++||.+|.|
T Consensus        81 ~vl~vvD~~~~~~--~~d~~i~~~l~~---~~~piilVvNK~D~~~~~~~~~~~~~--------lg~~~~~~vSa~~g~g  147 (429)
T TIGR03594        81 VILFVVDGREGLT--PEDEEIAKWLRK---SGKPVILVANKIDGKKEDAVAAEFYS--------LGFGEPIPISAEHGRG  147 (429)
T ss_pred             EEEEEEeCCCCCC--HHHHHHHHHHHH---hCCCEEEEEECccCCcccccHHHHHh--------cCCCCeEEEeCCcCCC
Confidence            9999999976432  222222333322   36899999999998754321111111        222 589999999999


Q ss_pred             hHHHHHHHHHHhhh
Q 030289          165 LYEGLDWLSSNVSA  178 (180)
Q Consensus       165 i~~~~~~l~~~~~~  178 (180)
                      ++++++++.+.+.+
T Consensus       148 v~~ll~~i~~~l~~  161 (429)
T TIGR03594       148 IGDLLDAILELLPE  161 (429)
T ss_pred             hHHHHHHHHHhcCc
Confidence            99999999988743

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK00089 era GTPase Era; Reviewed

Probab=99.90  E-value=4.2e-22  Score=145.28  Aligned_cols=156  Identities=21%  Similarity=0.253  Sum_probs=104.5

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCCcc--cccc-ccceeEEE-EEEcCeEEEEEEcCCCCCCh--------hhHHhhcc
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP-TIGFNVET-VEYKNVSFTVWDVGGQDKIR--------PLWRHYFQ   82 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~~~--~~~~-t~~~~~~~-~~~~~~~~~i~D~~G~~~~~--------~~~~~~~~   82 (180)
                      +.-.|+++|++|||||||+|+|++.+..  ...+ |+...... ...++.++.+|||||.....        ......+.
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~   83 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK   83 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence            4456999999999999999999987732  2222 33322222 33356899999999965432        22344667


Q ss_pred             ccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC-CCHhHHHhHhCCCccCCcceEEEEeeccC
Q 030289           83 NTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA-MSVSEVTDKLGLHSLRQRRWYIQAACATS  161 (180)
Q Consensus        83 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  161 (180)
                      ++|++++|+|+++.  +.....++...+..   .+.|+++|+||+|+... ....+....+...   ....+++++||++
T Consensus        84 ~~D~il~vvd~~~~--~~~~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~---~~~~~i~~iSA~~  155 (292)
T PRK00089         84 DVDLVLFVVDADEK--IGPGDEFILEKLKK---VKTPVILVLNKIDLVKDKEELLPLLEELSEL---MDFAEIVPISALK  155 (292)
T ss_pred             cCCEEEEEEeCCCC--CChhHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHHHHHHHHHhh---CCCCeEEEecCCC
Confidence            89999999999872  22233333333332   36899999999999742 2233333332211   1134799999999


Q ss_pred             CCChHHHHHHHHHHhhh
Q 030289          162 GQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       162 ~~~i~~~~~~l~~~~~~  178 (180)
                      +.|++++++++.+.+.+
T Consensus       156 ~~gv~~L~~~L~~~l~~  172 (292)
T PRK00089        156 GDNVDELLDVIAKYLPE  172 (292)
T ss_pred             CCCHHHHHHHHHHhCCC
Confidence            99999999999988754

>cd00880 Era_like Era (E

Probab=99.90  E-value=2.3e-22  Score=133.72  Aligned_cols=151  Identities=25%  Similarity=0.230  Sum_probs=105.9

Q ss_pred             EEcCCCCChHHHHHHhhcCCcc--cccc--ccceeEEEEEEc-CeEEEEEEcCCCCCCh-------hhHHhhccccCEEE
Q 030289           21 MVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYK-NVSFTVWDVGGQDKIR-------PLWRHYFQNTHGLI   88 (180)
Q Consensus        21 i~G~~~~GKStli~~l~~~~~~--~~~~--t~~~~~~~~~~~-~~~~~i~D~~G~~~~~-------~~~~~~~~~~~~~i   88 (180)
                      ++|++|+|||||++++.+....  ...+  |........... ...+.+||+||.....       .....+++.+|+++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il   80 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL   80 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence            5899999999999999976522  1111  333333344433 7799999999976653       34455788999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289           89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG  168 (180)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (180)
                      +|+|+.+........ +....    ...+.|+++|+||+|+..+....................+++++|++++.|++++
T Consensus        81 ~v~~~~~~~~~~~~~-~~~~~----~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l  155 (163)
T cd00880          81 FVVDADLRADEEEEK-LLELL----RERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL  155 (163)
T ss_pred             EEEeCCCCCCHHHHH-HHHHH----HhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence            999999876655544 22222    1257899999999999876554443221222223344678999999999999999


Q ss_pred             HHHHHHHh
Q 030289          169 LDWLSSNV  176 (180)
Q Consensus       169 ~~~l~~~~  176 (180)
                      ++++.+.+
T Consensus       156 ~~~l~~~~  163 (163)
T cd00880         156 REALIEAL  163 (163)
T ss_pred             HHHHHhhC
Confidence            99998753

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>COG1159 Era GTPase [General function prediction only]

Probab=99.89  E-value=2.2e-22  Score=141.77  Aligned_cols=157  Identities=20%  Similarity=0.186  Sum_probs=110.9

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC--cccccc-ccc-eeEEEEEEcCeEEEEEEcCCCCCC--------hhhHHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIP-TIG-FNVETVEYKNVSFTVWDVGGQDKI--------RPLWRHYF   81 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~--~~~~~~-t~~-~~~~~~~~~~~~~~i~D~~G~~~~--------~~~~~~~~   81 (180)
                      .+.--|+++|.|+||||||+|++.+.+  ..+..| |+. .-...+..++.++.++||||-.+-        .......+
T Consensus         4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl   83 (298)
T COG1159           4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL   83 (298)
T ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence            344568999999999999999999988  334333 333 444455558899999999994432        22344556


Q ss_pred             cccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC-HhHHHhHhCCCccCCcceEEEEeecc
Q 030289           82 QNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS-VSEVTDKLGLHSLRQRRWYIQAACAT  160 (180)
Q Consensus        82 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~  160 (180)
                      ..+|+++||+|+++.-  ..-..++...+..   .+.|+++++||.|...+.. +.++.+.......   ...++++||+
T Consensus        84 ~dvDlilfvvd~~~~~--~~~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~---f~~ivpiSA~  155 (298)
T COG1159          84 KDVDLILFVVDADEGW--GPGDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLP---FKEIVPISAL  155 (298)
T ss_pred             ccCcEEEEEEeccccC--CccHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCC---cceEEEeecc
Confidence            7899999999998532  2344444444332   4679999999999887655 3344433332211   1279999999


Q ss_pred             CCCChHHHHHHHHHHhhh
Q 030289          161 SGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       161 ~~~~i~~~~~~l~~~~~~  178 (180)
                      +|.|++.+.+.+...+.+
T Consensus       156 ~g~n~~~L~~~i~~~Lpe  173 (298)
T COG1159         156 KGDNVDTLLEIIKEYLPE  173 (298)
T ss_pred             ccCCHHHHHHHHHHhCCC
Confidence            999999999999988765

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.89  E-value=1.3e-21  Score=156.44  Aligned_cols=158  Identities=18%  Similarity=0.193  Sum_probs=112.3

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhhcCCcccc-c--cccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLKLGEIVTT-I--PTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLI   88 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~-~--~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   88 (180)
                      +..+..+|+|+|+.++|||||+++|........ .  .|.......+...+..+.+|||||+..|..++...+..+|+++
T Consensus       286 ~~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaI  365 (787)
T PRK05306        286 LVPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVV  365 (787)
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence            456789999999999999999999987663321 1  2333444556667789999999999999999998999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCC-c-cC--CcceEEEEeeccCCCC
Q 030289           89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLH-S-LR--QRRWYIQAACATSGQG  164 (180)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~-~-~~--~~~~~~~~~Sa~~~~~  164 (180)
                      +|+|+++...-+.... +...    ...++|+++++||+|+... +.+.+...+... . ..  ...++++++||++|.|
T Consensus       366 LVVdAddGv~~qT~e~-i~~a----~~~~vPiIVviNKiDl~~a-~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~G  439 (787)
T PRK05306        366 LVVAADDGVMPQTIEA-INHA----KAAGVPIIVAINKIDKPGA-NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEG  439 (787)
T ss_pred             EEEECCCCCCHhHHHH-HHHH----HhcCCcEEEEEECcccccc-CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCC
Confidence            9999986422122221 2221    1246899999999999653 233333222111 1 11  1236899999999999


Q ss_pred             hHHHHHHHHHH
Q 030289          165 LYEGLDWLSSN  175 (180)
Q Consensus       165 i~~~~~~l~~~  175 (180)
                      ++++++++...
T Consensus       440 I~eLle~I~~~  450 (787)
T PRK05306        440 IDELLEAILLQ  450 (787)
T ss_pred             chHHHHhhhhh
Confidence            99999998753

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.89  E-value=1.3e-21  Score=155.34  Aligned_cols=159  Identities=17%  Similarity=0.185  Sum_probs=111.2

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhhcCCcccc---ccccceeEE--EEEE--cCeEEEEEEcCCCCCChhhHHhhcccc
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVE--TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNT   84 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~---~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~   84 (180)
                      +..+..+|+++|+.++|||||+++|........   ..|..+...  .+..  .+..+.+|||||+..|..++..++..+
T Consensus       240 l~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~a  319 (742)
T CHL00189        240 SINRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVT  319 (742)
T ss_pred             hcccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHC
Confidence            456788999999999999999999987663321   123332222  2332  358999999999999999999999999


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCc--cC--CcceEEEEeecc
Q 030289           85 HGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHS--LR--QRRWYIQAACAT  160 (180)
Q Consensus        85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~Sa~  160 (180)
                      |++++|+|+++....+.... +..+    ...++|+++++||+|+... ..+++...+....  ..  ...++++++||+
T Consensus       320 DiaILVVDA~dGv~~QT~E~-I~~~----k~~~iPiIVViNKiDl~~~-~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAk  393 (742)
T CHL00189        320 DIAILIIAADDGVKPQTIEA-INYI----QAANVPIIVAINKIDKANA-NTERIKQQLAKYNLIPEKWGGDTPMIPISAS  393 (742)
T ss_pred             CEEEEEEECcCCCChhhHHH-HHHH----HhcCceEEEEEECCCcccc-CHHHHHHHHHHhccchHhhCCCceEEEEECC
Confidence            99999999986432222221 2222    1247899999999999763 2333333322110  11  123689999999


Q ss_pred             CCCChHHHHHHHHHHh
Q 030289          161 SGQGLYEGLDWLSSNV  176 (180)
Q Consensus       161 ~~~~i~~~~~~l~~~~  176 (180)
                      +|.|++++++++....
T Consensus       394 tG~GIdeLle~I~~l~  409 (742)
T CHL00189        394 QGTNIDKLLETILLLA  409 (742)
T ss_pred             CCCCHHHHHHhhhhhh
Confidence            9999999999987653

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.88  E-value=3.8e-22  Score=156.50  Aligned_cols=156  Identities=20%  Similarity=0.124  Sum_probs=109.0

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCC---c-ccc--ccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGE---I-VTT--IPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV   90 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~---~-~~~--~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (180)
                      +.|+++|++++|||||+++|++..   . .++  ..|+++.+..+...+..+.+||+||++.|.......+.++|++++|
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV   80 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV   80 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence            479999999999999999998633   1 222  2355566666777779999999999999988888889999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhcccccCCCe-EEEEEecCCCCCCCCHhHHHhHhC---CCccCCcceEEEEeeccCCCChH
Q 030289           91 VDSNDRERIGEAKDELHRMLSEDELREAV-LLVFANKQDLPNAMSVSEVTDKLG---LHSLRQRRWYIQAACATSGQGLY  166 (180)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iiiv~nK~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~Sa~~~~~i~  166 (180)
                      +|+++... ......+. ++..   .++| +++|+||+|+.++...+.......   .......+.+++++|+++|.|++
T Consensus        81 VDa~~G~~-~qT~ehl~-il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~  155 (581)
T TIGR00475        81 VDADEGVM-TQTGEHLA-VLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIG  155 (581)
T ss_pred             EECCCCCc-HHHHHHHH-HHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCch
Confidence            99986311 11112221 2221   3566 999999999976432222111111   00001124689999999999999


Q ss_pred             HHHHHHHHHhh
Q 030289          167 EGLDWLSSNVS  177 (180)
Q Consensus       167 ~~~~~l~~~~~  177 (180)
                      +++..+.+.+.
T Consensus       156 eL~~~L~~l~~  166 (581)
T TIGR00475       156 ELKKELKNLLE  166 (581)
T ss_pred             hHHHHHHHHHH
Confidence            99999877654

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.88  E-value=5.8e-22  Score=151.22  Aligned_cols=154  Identities=19%  Similarity=0.180  Sum_probs=104.7

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCC--cc--------------------------------ccccccceeEEEEEEc
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGE--IV--------------------------------TTIPTIGFNVETVEYK   58 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~--~~--------------------------------~~~~t~~~~~~~~~~~   58 (180)
                      ..++++|+++|++++|||||+++|+...  ..                                ....|++.....+..+
T Consensus         3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~   82 (425)
T PRK12317          3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD   82 (425)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence            4678999999999999999999998432  10                                1223666667777778


Q ss_pred             CeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--H-
Q 030289           59 NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--V-  135 (180)
Q Consensus        59 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~-  135 (180)
                      +..+.+|||||++.|.......+..+|++++|+|++++..+.....++..+...  ....++++++||+|+.+...  . 
T Consensus        83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~--~~~~~iivviNK~Dl~~~~~~~~~  160 (425)
T PRK12317         83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART--LGINQLIVAINKMDAVNYDEKRYE  160 (425)
T ss_pred             CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH--cCCCeEEEEEEccccccccHHHHH
Confidence            999999999999988766666678999999999998632232222232223222  12346999999999975211  1 


Q ss_pred             ---hHHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289          136 ---SEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG  168 (180)
Q Consensus       136 ---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (180)
                         +++.+.+.........++++++||++|+|+++.
T Consensus       161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~  196 (425)
T PRK12317        161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK  196 (425)
T ss_pred             HHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccc
Confidence               122222221222222468999999999999874

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.88  E-value=1.7e-21  Score=156.48  Aligned_cols=153  Identities=20%  Similarity=0.219  Sum_probs=104.2

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCc--ccccc--ccceeEEEEEEcCeEEEEEEcCCCCC--------ChhhHHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNVSFTVWDVGGQDK--------IRPLWRHYF   81 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~   81 (180)
                      ....+|+|+|.+|||||||+|+|++...  ....+  |.+.........+..+.+|||||...        +......++
T Consensus       273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~  352 (712)
T PRK09518        273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV  352 (712)
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence            4457899999999999999999998763  23333  22333334455678999999999663        233455678


Q ss_pred             cccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccC
Q 030289           82 QNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATS  161 (180)
Q Consensus        82 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  161 (180)
                      +.+|++++|+|+++.  +......+...+..   .+.|+++|+||+|+.....  .........    .+ ..+++||++
T Consensus       353 ~~aD~iL~VvDa~~~--~~~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~~--~~~~~~~lg----~~-~~~~iSA~~  420 (712)
T PRK09518        353 SLADAVVFVVDGQVG--LTSTDERIVRMLRR---AGKPVVLAVNKIDDQASEY--DAAEFWKLG----LG-EPYPISAMH  420 (712)
T ss_pred             HhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECcccccchh--hHHHHHHcC----CC-CeEEEECCC
Confidence            899999999999753  22233222333322   4789999999999865321  111111111    11 247899999


Q ss_pred             CCChHHHHHHHHHHhhh
Q 030289          162 GQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       162 ~~~i~~~~~~l~~~~~~  178 (180)
                      |.||+++++++.+.+.+
T Consensus       421 g~GI~eLl~~i~~~l~~  437 (712)
T PRK09518        421 GRGVGDLLDEALDSLKV  437 (712)
T ss_pred             CCCchHHHHHHHHhccc
Confidence            99999999999988754

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.88  E-value=5.7e-22  Score=146.88  Aligned_cols=148  Identities=24%  Similarity=0.297  Sum_probs=111.6

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCC--cccccc--ccceeEEEEEEcCeEEEEEEcCCCCCC---------hhhHHhhccc
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGE--IVTTIP--TIGFNVETVEYKNVSFTVWDVGGQDKI---------RPLWRHYFQN   83 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~--~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~~~   83 (180)
                      ..|+++|.||||||||+|||++.+  .++..|  |.+..+......+..|.++||+|-+..         .......+..
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e   83 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE   83 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence            679999999999999999999988  455444  778888888888899999999995532         2335667778


Q ss_pred             cCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCC
Q 030289           84 THGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQ  163 (180)
Q Consensus        84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  163 (180)
                      ||+++||+|...  .+...++.+..++..   .++|+++|+||+|.........-.-.++..       .++.+||..|.
T Consensus        84 ADvilfvVD~~~--Git~~D~~ia~~Lr~---~~kpviLvvNK~D~~~~e~~~~efyslG~g-------~~~~ISA~Hg~  151 (444)
T COG1160          84 ADVILFVVDGRE--GITPADEEIAKILRR---SKKPVILVVNKIDNLKAEELAYEFYSLGFG-------EPVPISAEHGR  151 (444)
T ss_pred             CCEEEEEEeCCC--CCCHHHHHHHHHHHh---cCCCEEEEEEcccCchhhhhHHHHHhcCCC-------CceEeehhhcc
Confidence            999999999863  233444444445442   468999999999987432211111223322       57999999999


Q ss_pred             ChHHHHHHHHHHh
Q 030289          164 GLYEGLDWLSSNV  176 (180)
Q Consensus       164 ~i~~~~~~l~~~~  176 (180)
                      |+.++.+++...+
T Consensus       152 Gi~dLld~v~~~l  164 (444)
T COG1160         152 GIGDLLDAVLELL  164 (444)
T ss_pred             CHHHHHHHHHhhc
Confidence            9999999999886

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.88  E-value=4.5e-21  Score=121.86  Aligned_cols=161  Identities=24%  Similarity=0.344  Sum_probs=125.6

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCC---ccccccccc-eeEEEEEE---cCeEEEEEEcCCCCCC-hhhHHhhccccCE
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGE---IVTTIPTIG-FNVETVEY---KNVSFTVWDVGGQDKI-RPLWRHYFQNTHG   86 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~---~~~~~~t~~-~~~~~~~~---~~~~~~i~D~~G~~~~-~~~~~~~~~~~~~   86 (180)
                      +..||++.|..++|||++++.|..+.   ..++.||++ +....+..   ....++++||.|-..+ ..+-+.|+.-+|+
T Consensus         8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa   87 (198)
T KOG3883|consen    8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA   87 (198)
T ss_pred             cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence            47899999999999999999998776   345567776 44445544   3457999999997777 6678889999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChH
Q 030289           87 LIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLY  166 (180)
Q Consensus        87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  166 (180)
                      +++||+..|++||+.....-..+-.+.....+|+++.+||+|+.++...+.-   ....++....+..+++++++..++-
T Consensus        88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d---~A~~Wa~rEkvkl~eVta~dR~sL~  164 (198)
T KOG3883|consen   88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMD---VAQIWAKREKVKLWEVTAMDRPSLY  164 (198)
T ss_pred             EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHH---HHHHHHhhhheeEEEEEeccchhhh
Confidence            9999999999999887765555545555567999999999999876544321   1223334456789999999999999


Q ss_pred             HHHHHHHHHhhh
Q 030289          167 EGLDWLSSNVSA  178 (180)
Q Consensus       167 ~~~~~l~~~~~~  178 (180)
                      |.|-++...+.+
T Consensus       165 epf~~l~~rl~~  176 (198)
T KOG3883|consen  165 EPFTYLASRLHQ  176 (198)
T ss_pred             hHHHHHHHhccC
Confidence            999999887654

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.88  E-value=2.4e-21  Score=143.63  Aligned_cols=158  Identities=18%  Similarity=0.201  Sum_probs=118.8

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCC--cccc--ccccceeEEEEEEcCeEEEEEEcCCCCC----------Ch-hhHHh
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGE--IVTT--IPTIGFNVETVEYKNVSFTVWDVGGQDK----------IR-PLWRH   79 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~--~~~~--~~t~~~~~~~~~~~~~~~~i~D~~G~~~----------~~-~~~~~   79 (180)
                      ..+||+|+|.|++|||||+|++++.+  ....  ..|.+.-...+..++.++.++||+|-.+          |. .....
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~  256 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK  256 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence            46999999999999999999999888  3333  3466677777888999999999999332          22 22556


Q ss_pred             hccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC--CCHhHHHhHhCCCccCCcceEEEEe
Q 030289           80 YFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA--MSVSEVTDKLGLHSLRQRRWYIQAA  157 (180)
Q Consensus        80 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  157 (180)
                      .+..+|.+++|+|++.+  +...+..+..++..   .+.++++++||+|+.++  ...++....+......-..++++++
T Consensus       257 aI~~a~vvllviDa~~~--~~~qD~~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~i  331 (444)
T COG1160         257 AIERADVVLLVIDATEG--ISEQDLRIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI  331 (444)
T ss_pred             HHhhcCEEEEEEECCCC--chHHHHHHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEE
Confidence            67789999999999844  33444444444333   57889999999999875  4455665555554334445699999


Q ss_pred             eccCCCChHHHHHHHHHHhh
Q 030289          158 CATSGQGLYEGLDWLSSNVS  177 (180)
Q Consensus       158 Sa~~~~~i~~~~~~l~~~~~  177 (180)
                      ||.++.++.++|+.+.+...
T Consensus       332 SA~~~~~i~~l~~~i~~~~~  351 (444)
T COG1160         332 SALTGQGLDKLFEAIKEIYE  351 (444)
T ss_pred             EecCCCChHHHHHHHHHHHH
Confidence            99999999999999887644

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.88  E-value=6.3e-22  Score=150.99  Aligned_cols=153  Identities=18%  Similarity=0.109  Sum_probs=102.7

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCC--cc--------------------------------ccccccceeEEEEEEc
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGE--IV--------------------------------TTIPTIGFNVETVEYK   58 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~--~~--------------------------------~~~~t~~~~~~~~~~~   58 (180)
                      ...+++|+++|+.++|||||+++|+...  ..                                +...|++.....+..+
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~   83 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD   83 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence            5678999999999999999999997521  11                                1122555556667778


Q ss_pred             CeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHH-HHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--H
Q 030289           59 NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIG-EAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--V  135 (180)
Q Consensus        59 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~  135 (180)
                      +..+.+|||||++.|.......+..+|++++|+|+++.+... ....+...+...  ....++++++||+|+.+...  .
T Consensus        84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~--~~~~~iIVviNK~Dl~~~~~~~~  161 (426)
T TIGR00483        84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLART--LGINQLIVAINKMDSVNYDEEEF  161 (426)
T ss_pred             CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHH--cCCCeEEEEEEChhccCccHHHH
Confidence            899999999999988777777788999999999998764321 111111122222  12357999999999974211  1


Q ss_pred             h----HHHhHhCCCccCCcceEEEEeeccCCCChHH
Q 030289          136 S----EVTDKLGLHSLRQRRWYIQAACATSGQGLYE  167 (180)
Q Consensus       136 ~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  167 (180)
                      +    ++...+.........++++++||++|.|+++
T Consensus       162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~  197 (426)
T TIGR00483       162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK  197 (426)
T ss_pred             HHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence            1    2222221111222346899999999999986

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.88  E-value=9.7e-21  Score=133.48  Aligned_cols=149  Identities=23%  Similarity=0.217  Sum_probs=102.8

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCCc-cc--cccccceeEEEEEEcCeEEEEEEcCCCCCCh-------hhHHhhccccCEE
Q 030289           18 RILMVGLDAAGKTTILYKLKLGEI-VT--TIPTIGFNVETVEYKNVSFTVWDVGGQDKIR-------PLWRHYFQNTHGL   87 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~~-~~--~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~~~~   87 (180)
                      +|+++|++|+|||||+|+|.+... ..  ...|.+.....+...+..+++||+||.....       ......++++|++
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i   81 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI   81 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence            689999999999999999997662 21  1235566677777889999999999975432       1234578899999


Q ss_pred             EEEEECCChh-hHHHHHHHHH----------------------------------------HHhccc-------------
Q 030289           88 IFVVDSNDRE-RIGEAKDELH----------------------------------------RMLSED-------------  113 (180)
Q Consensus        88 i~v~d~~~~~-~~~~~~~~~~----------------------------------------~~~~~~-------------  113 (180)
                      ++|+|+++++ ....+...+.                                        .++...             
T Consensus        82 l~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~  161 (233)
T cd01896          82 LMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDI  161 (233)
T ss_pred             EEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCC
Confidence            9999997654 2222222221                                        111000             


Q ss_pred             -----------ccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHHh
Q 030289          114 -----------ELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV  176 (180)
Q Consensus       114 -----------~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  176 (180)
                                 ...-+|+++|+||+|+.+....+    .+.    .  ...++++||+++.|++++|+.+.+.+
T Consensus       162 ~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~----~~~----~--~~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         162 TVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELD----LLA----R--QPNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             CHHHHHHHHhCCceEeeEEEEEECccCCCHHHHH----HHh----c--CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                       01125899999999987543222    111    1  12489999999999999999998875

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.87  E-value=7.5e-21  Score=149.48  Aligned_cols=155  Identities=17%  Similarity=0.199  Sum_probs=109.3

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC--cc---------c-------cccccceeEEEEEE-----cCeEEEEEEcCCC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE--IV---------T-------TIPTIGFNVETVEY-----KNVSFTVWDVGGQ   70 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~--~~---------~-------~~~t~~~~~~~~~~-----~~~~~~i~D~~G~   70 (180)
                      ++.-|++++|+.++|||||+.+|+...  ..         .       ...|+......+.+     +++.+.+|||||+
T Consensus         5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh   84 (600)
T PRK05433          5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH   84 (600)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence            345699999999999999999997532  10         0       01122222223332     3688999999999


Q ss_pred             CCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC---HhHHHhHhCCCcc
Q 030289           71 DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS---VSEVTDKLGLHSL  147 (180)
Q Consensus        71 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~---~~~~~~~~~~~~~  147 (180)
                      ..+...+..++..+|++++|+|+++....+....|....     ..++|+++|+||+|+.....   .+++.+.++..  
T Consensus        85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~-----~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~--  157 (600)
T PRK05433         85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-----ENDLEIIPVLNKIDLPAADPERVKQEIEDVIGID--  157 (600)
T ss_pred             HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-----HCCCCEEEEEECCCCCcccHHHHHHHHHHHhCCC--
Confidence            999988999999999999999998765444444443322     13678999999999865321   12233322221  


Q ss_pred             CCcceEEEEeeccCCCChHHHHHHHHHHhhh
Q 030289          148 RQRRWYIQAACATSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       148 ~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  178 (180)
                         ...++++||++|.|++++++++.+.+..
T Consensus       158 ---~~~vi~iSAktG~GI~~Ll~~I~~~lp~  185 (600)
T PRK05433        158 ---ASDAVLVSAKTGIGIEEVLEAIVERIPP  185 (600)
T ss_pred             ---cceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence               1258999999999999999999987653

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.87  E-value=9.7e-21  Score=140.74  Aligned_cols=155  Identities=19%  Similarity=0.270  Sum_probs=116.2

Q ss_pred             hhcccCccEEEEEcCCCCChHHHHHHhhcCC--cccccc--ccceeEEEEEEcCeEEEEEEcCCCCCChhh--------H
Q 030289           10 MLFARKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIP--TIGFNVETVEYKNVSFTVWDVGGQDKIRPL--------W   77 (180)
Q Consensus        10 ~~~~~~~~~i~i~G~~~~GKStli~~l~~~~--~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~   77 (180)
                      ...-+..+|++++|.||||||||+|.|++.+  .++..|  |.++-...+.+.++.+++.||+|-.+-...        .
T Consensus       211 g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs  290 (454)
T COG0486         211 GKILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERA  290 (454)
T ss_pred             hhhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHH
Confidence            3445889999999999999999999999887  666555  777888899999999999999995543222        4


Q ss_pred             HhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEe
Q 030289           78 RHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAA  157 (180)
Q Consensus        78 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (180)
                      ...+.++|.+++|+|.+.+.+  .....+...    ...+.|+++|.||+|+..+......  ..      ..+.+++.+
T Consensus       291 ~~~i~~ADlvL~v~D~~~~~~--~~d~~~~~~----~~~~~~~i~v~NK~DL~~~~~~~~~--~~------~~~~~~i~i  356 (454)
T COG0486         291 KKAIEEADLVLFVLDASQPLD--KEDLALIEL----LPKKKPIIVVLNKADLVSKIELESE--KL------ANGDAIISI  356 (454)
T ss_pred             HHHHHhCCEEEEEEeCCCCCc--hhhHHHHHh----cccCCCEEEEEechhcccccccchh--hc------cCCCceEEE
Confidence            456678999999999987522  111111111    1356899999999999886553332  11      112368999


Q ss_pred             eccCCCChHHHHHHHHHHhhh
Q 030289          158 CATSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       158 Sa~~~~~i~~~~~~l~~~~~~  178 (180)
                      |+++++|++.+.+.+.+.+..
T Consensus       357 Sa~t~~Gl~~L~~~i~~~~~~  377 (454)
T COG0486         357 SAKTGEGLDALREAIKQLFGK  377 (454)
T ss_pred             EecCccCHHHHHHHHHHHHhh
Confidence            999999999999999887654

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=1.2e-21  Score=128.68  Aligned_cols=157  Identities=20%  Similarity=0.323  Sum_probs=134.5

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCcc-ccccccceeEEEEEE----cCeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLI   88 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   88 (180)
                      ...++++++|+.|.||||++++...+++. ++.+|++........    ..+++..|||.|++.+..+...++-+..+++
T Consensus         8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi   87 (216)
T KOG0096|consen    8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI   87 (216)
T ss_pred             cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence            34899999999999999999999999854 577899977765544    3489999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289           89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG  168 (180)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (180)
                      ++||+..+-.+.....|..++.+..  .++||++++||.|.....     .+.......+..++++++.|++++.|.+.-
T Consensus        88 imFdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~r~-----~k~k~v~~~rkknl~y~~iSaksn~NfekP  160 (216)
T KOG0096|consen   88 IMFDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKARK-----VKAKPVSFHRKKNLQYYEISAKSNYNFERP  160 (216)
T ss_pred             EEeeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceeccccc-----cccccceeeecccceeEEeecccccccccc
Confidence            9999999999999999999998764  469999999999987642     234445556677889999999999999999


Q ss_pred             HHHHHHHhh
Q 030289          169 LDWLSSNVS  177 (180)
Q Consensus       169 ~~~l~~~~~  177 (180)
                      |-|+.+.+.
T Consensus       161 Fl~LarKl~  169 (216)
T KOG0096|consen  161 FLWLARKLT  169 (216)
T ss_pred             hHHHhhhhc
Confidence            999998864

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.87  E-value=8.2e-21  Score=152.45  Aligned_cols=151  Identities=21%  Similarity=0.189  Sum_probs=106.5

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCCc-ccc--ccccceeEEEEEEcCeEEEEEEcCCCCCChh----------hHHhhc
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGEI-VTT--IPTIGFNVETVEYKNVSFTVWDVGGQDKIRP----------LWRHYF   81 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~~-~~~--~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~~   81 (180)
                      +.++|+++|++|||||||+|+|.+... ...  ..|++.....+...+.++.+||+||...+..          ....++
T Consensus         2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l   81 (772)
T PRK09554          2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI   81 (772)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence            568999999999999999999987652 222  2355555556677888999999999765532          122333


Q ss_pred             --cccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeec
Q 030289           82 --QNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACA  159 (180)
Q Consensus        82 --~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (180)
                        ..+|++++|+|+++.+..   ..+..++.+    .++|+++++||+|+.+........+.+.    +..+++++++|+
T Consensus        82 ~~~~aD~vI~VvDat~ler~---l~l~~ql~e----~giPvIvVlNK~Dl~~~~~i~id~~~L~----~~LG~pVvpiSA  150 (772)
T PRK09554         82 LSGDADLLINVVDASNLERN---LYLTLQLLE----LGIPCIVALNMLDIAEKQNIRIDIDALS----ARLGCPVIPLVS  150 (772)
T ss_pred             hccCCCEEEEEecCCcchhh---HHHHHHHHH----cCCCEEEEEEchhhhhccCcHHHHHHHH----HHhCCCEEEEEe
Confidence              378999999999875432   233344432    3689999999999875433222122211    223568999999


Q ss_pred             cCCCChHHHHHHHHHHh
Q 030289          160 TSGQGLYEGLDWLSSNV  176 (180)
Q Consensus       160 ~~~~~i~~~~~~l~~~~  176 (180)
                      .+++|++++++.+.+..
T Consensus       151 ~~g~GIdeL~~~I~~~~  167 (772)
T PRK09554        151 TRGRGIEALKLAIDRHQ  167 (772)
T ss_pred             ecCCCHHHHHHHHHHhh
Confidence            99999999999987754

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.87  E-value=1.8e-20  Score=132.28  Aligned_cols=155  Identities=19%  Similarity=0.195  Sum_probs=109.9

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCC--cc------------c-------cccccceeEEEEEEcCeEEEEEEcCCCCCChhh
Q 030289           18 RILMVGLDAAGKTTILYKLKLGE--IV------------T-------TIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPL   76 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~--~~------------~-------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   76 (180)
                      ||+++|+.|+|||||+++|+...  ..            +       ...|+......+...+.++.+|||||+..+...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            68999999999999999997532  00            0       111334455667778999999999999999888


Q ss_pred             HHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC---CHhHHHhHhCC---------
Q 030289           77 WRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM---SVSEVTDKLGL---------  144 (180)
Q Consensus        77 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~---~~~~~~~~~~~---------  144 (180)
                      +..+++.+|++++|+|+.+... .....++.....    .++|+++++||+|+....   ..+++.+.++.         
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~-~~~~~~~~~~~~----~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~  155 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQ-AQTRILWRLLRK----LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG  155 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCC-HHHHHHHHHHHH----cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCc
Confidence            9999999999999999986533 233344443322    368999999999987521   11122221111         


Q ss_pred             -----------------------------------------------CccCCcceEEEEeeccCCCChHHHHHHHHHHhh
Q 030289          145 -----------------------------------------------HSLRQRRWYIQAACATSGQGLYEGLDWLSSNVS  177 (180)
Q Consensus       145 -----------------------------------------------~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  177 (180)
                                                                     ......-+|++..||.++.|++.+++.+.+.+.
T Consensus       156 ~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p  235 (237)
T cd04168         156 LAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFP  235 (237)
T ss_pred             EeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcC
Confidence                                                           000123468999999999999999999988764

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.86  E-value=9.7e-21  Score=131.65  Aligned_cols=146  Identities=19%  Similarity=0.164  Sum_probs=93.6

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCC--ccc--------------------------------cccccceeEEEEEEcCeEEE
Q 030289           18 RILMVGLDAAGKTTILYKLKLGE--IVT--------------------------------TIPTIGFNVETVEYKNVSFT   63 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~--~~~--------------------------------~~~t~~~~~~~~~~~~~~~~   63 (180)
                      ||+++|++|+|||||+++|+...  ...                                ...|.+.....+...+.++.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~   80 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI   80 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence            68999999999999999997543  110                                11244444555666788999


Q ss_pred             EEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhH
Q 030289           64 VWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDK  141 (180)
Q Consensus        64 i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~  141 (180)
                      +|||||+..+.......++.+|++++|+|+++... ..... ...+...  ....++++|+||+|+.+...  .+.+...
T Consensus        81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~-~~~~~-~~~~~~~--~~~~~iIvviNK~D~~~~~~~~~~~i~~~  156 (208)
T cd04166          81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVL-EQTRR-HSYILSL--LGIRHVVVAVNKMDLVDYSEEVFEEIVAD  156 (208)
T ss_pred             EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCcc-HhHHH-HHHHHHH--cCCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence            99999998876666777899999999999986421 11111 1112221  12245788999999875321  1112211


Q ss_pred             hCC--CccCCcceEEEEeeccCCCChHH
Q 030289          142 LGL--HSLRQRRWYIQAACATSGQGLYE  167 (180)
Q Consensus       142 ~~~--~~~~~~~~~~~~~Sa~~~~~i~~  167 (180)
                      +..  ........+++++||++|.|+++
T Consensus       157 ~~~~~~~~~~~~~~ii~iSA~~g~ni~~  184 (208)
T cd04166         157 YLAFAAKLGIEDITFIPISALDGDNVVS  184 (208)
T ss_pred             HHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence            110  00111124699999999999975

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.86  E-value=5.3e-21  Score=150.21  Aligned_cols=143  Identities=19%  Similarity=0.235  Sum_probs=99.5

Q ss_pred             cCCCCChHHHHHHhhcCCc-ccccc--ccceeEEEEEEcCeEEEEEEcCCCCCChhh------HHhhc--cccCEEEEEE
Q 030289           23 GLDAAGKTTILYKLKLGEI-VTTIP--TIGFNVETVEYKNVSFTVWDVGGQDKIRPL------WRHYF--QNTHGLIFVV   91 (180)
Q Consensus        23 G~~~~GKStli~~l~~~~~-~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~~~~i~v~   91 (180)
                      |++|||||||+|++.+... ....|  |++.....+..++.++.+|||||+..+...      .+.++  .++|++++|+
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv   80 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV   80 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence            8999999999999998762 33334  444455566778889999999998776432      34443  3689999999


Q ss_pred             ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHH
Q 030289           92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDW  171 (180)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  171 (180)
                      |+++.+.   ...+..+..+    .++|+++|+||+|+.+........+.+.    +..+.+++++||++|+|+++++++
T Consensus        81 Dat~ler---~l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~----~~lg~pvv~tSA~tg~Gi~eL~~~  149 (591)
T TIGR00437        81 DASNLER---NLYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKLE----ERLGVPVVPTSATEGRGIERLKDA  149 (591)
T ss_pred             cCCcchh---hHHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHHH----HHcCCCEEEEECCCCCCHHHHHHH
Confidence            9986432   2333333322    3689999999999865332211111111    123467999999999999999999


Q ss_pred             HHHHh
Q 030289          172 LSSNV  176 (180)
Q Consensus       172 l~~~~  176 (180)
                      +.+..
T Consensus       150 i~~~~  154 (591)
T TIGR00437       150 IRKAI  154 (591)
T ss_pred             HHHHh
Confidence            98753

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.86  E-value=4.8e-21  Score=145.08  Aligned_cols=159  Identities=17%  Similarity=0.111  Sum_probs=104.6

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCcc------ccccccceeEEEEE--------------E------------cCeE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEIV------TTIPTIGFNVETVE--------------Y------------KNVS   61 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~------~~~~t~~~~~~~~~--------------~------------~~~~   61 (180)
                      +.+++|+++|+.++|||||+++|.+....      +...|+...+..+.              .            .+..
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            56899999999999999999999753211      11112222211110              1            1467


Q ss_pred             EEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCH----hH
Q 030289           62 FTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSV----SE  137 (180)
Q Consensus        62 ~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~----~~  137 (180)
                      +.+||+||++.|...+......+|++++|+|+++..........+..+ ..  ....|+++++||+|+.+....    ++
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~--~gi~~iIVvvNK~Dl~~~~~~~~~~~~  158 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EI--IGIKNIVIVQNKIDLVSKEKALENYEE  158 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HH--cCCCeEEEEEEccccCCHHHHHHHHHH
Confidence            999999999999888888888899999999998642112222222222 21  123468999999999764322    12


Q ss_pred             HHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHHhh
Q 030289          138 VTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVS  177 (180)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  177 (180)
                      +.+.+...  ...+++++++||++|+|+++++++|...+.
T Consensus       159 i~~~l~~~--~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       159 IKEFVKGT--VAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             HHhhhhhc--ccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence            22211111  123568999999999999999999988654

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.86  E-value=1.3e-20  Score=126.31  Aligned_cols=163  Identities=17%  Similarity=0.229  Sum_probs=111.3

Q ss_pred             HHhhhcccCccEEEEEcCCCCChHHHHHHhhcCC-cccccc----ccceeEEEEEEcCeEEEEEEcCC----------CC
Q 030289            7 RLKMLFARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIP----TIGFNVETVEYKNVSFTVWDVGG----------QD   71 (180)
Q Consensus         7 ~~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~----t~~~~~~~~~~~~~~~~i~D~~G----------~~   71 (180)
                      .+++.++.....|+++|.++||||||||+|++++ ......    |.-+++..+..   .+.++|.||          .+
T Consensus        15 ~~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~---~~~lVDlPGYGyAkv~k~~~e   91 (200)
T COG0218          15 DIKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD---ELRLVDLPGYGYAKVPKEVKE   91 (200)
T ss_pred             CHhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC---cEEEEeCCCcccccCCHHHHH
Confidence            3466777788899999999999999999999976 333333    44445544433   399999999          23


Q ss_pred             CChhhHHhhccc---cCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCH----hHHHhHhCC
Q 030289           72 KIRPLWRHYFQN---THGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSV----SEVTDKLGL  144 (180)
Q Consensus        72 ~~~~~~~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~----~~~~~~~~~  144 (180)
                      .+......|++.   ..++++++|+..+-  ...+..+.+++..   .++|+++++||+|.......    ..+...+..
T Consensus        92 ~w~~~i~~YL~~R~~L~~vvlliD~r~~~--~~~D~em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~  166 (200)
T COG0218          92 KWKKLIEEYLEKRANLKGVVLLIDARHPP--KDLDREMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKK  166 (200)
T ss_pred             HHHHHHHHHHhhchhheEEEEEEECCCCC--cHHHHHHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcC
Confidence            344556666653   46788889986532  3333344444333   58999999999998875433    334434443


Q ss_pred             CccCCcceEEEEeeccCCCChHHHHHHHHHHhhhc
Q 030289          145 HSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       145 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  179 (180)
                      ......  .++..|+.++.|++++...|.+.+.+.
T Consensus       167 ~~~~~~--~~~~~ss~~k~Gi~~l~~~i~~~~~~~  199 (200)
T COG0218         167 PPPDDQ--WVVLFSSLKKKGIDELKAKILEWLKEA  199 (200)
T ss_pred             CCCccc--eEEEEecccccCHHHHHHHHHHHhhcc
Confidence            322111  188899999999999999999887653

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.86  E-value=9.1e-21  Score=130.05  Aligned_cols=146  Identities=18%  Similarity=0.118  Sum_probs=97.2

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC-----c--------------cccccccceeEEEEEEcCeEEEEEEcCCCCCChhh
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE-----I--------------VTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPL   76 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~-----~--------------~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   76 (180)
                      +++|+++|+.++|||||+++|+...     .              .....|+......+..++.++.++||||+..+...
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~   81 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN   81 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence            6899999999999999999997531     0              01122444444455557789999999999888777


Q ss_pred             HHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCe-EEEEEecCCCCCCCC-Hh----HHHhHhCCCccCCc
Q 030289           77 WRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV-LLVFANKQDLPNAMS-VS----EVTDKLGLHSLRQR  150 (180)
Q Consensus        77 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iiiv~nK~D~~~~~~-~~----~~~~~~~~~~~~~~  150 (180)
                      ....+..+|++++|+|+...-. ......+..+ ..   .++| +++++||+|+..... .+    ++...+....+...
T Consensus        82 ~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~-~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~  156 (195)
T cd01884          82 MITGAAQMDGAILVVSATDGPM-PQTREHLLLA-RQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGD  156 (195)
T ss_pred             HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHH-HH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhccccc
Confidence            7788889999999999975321 1222223322 22   3455 789999999864322 11    22222222222234


Q ss_pred             ceEEEEeeccCCCChH
Q 030289          151 RWYIQAACATSGQGLY  166 (180)
Q Consensus       151 ~~~~~~~Sa~~~~~i~  166 (180)
                      +++++++||++|.|+.
T Consensus       157 ~v~iipiSa~~g~n~~  172 (195)
T cd01884         157 NTPIVRGSALKALEGD  172 (195)
T ss_pred             CCeEEEeeCccccCCC
Confidence            6799999999999853

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.86  E-value=1.1e-20  Score=148.21  Aligned_cols=156  Identities=21%  Similarity=0.224  Sum_probs=113.9

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCC--ccc-----------------cccccceeEEEEEEcCeEEEEEEcCCCCCChhhHH
Q 030289           18 RILMVGLDAAGKTTILYKLKLGE--IVT-----------------TIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWR   78 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~--~~~-----------------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~   78 (180)
                      ||+|+|+.++|||||+++|+...  +..                 ...|+......+...+.++.+|||||+..|.....
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~   82 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE   82 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence            79999999999999999998532  111                 12244455567778899999999999999988899


Q ss_pred             hhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC---HhHHHhHhCCCcc--CCcceE
Q 030289           79 HYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS---VSEVTDKLGLHSL--RQRRWY  153 (180)
Q Consensus        79 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~---~~~~~~~~~~~~~--~~~~~~  153 (180)
                      .+++.+|++++|+|+.+. .......|+.....    .++|.++|+||+|+.+...   .+++.+.+.....  ....++
T Consensus        83 ~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~p  157 (594)
T TIGR01394        83 RVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFP  157 (594)
T ss_pred             HHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCc
Confidence            999999999999999753 23444555555433    4688999999999865321   2222222211111  234578


Q ss_pred             EEEeeccCCC----------ChHHHHHHHHHHhhh
Q 030289          154 IQAACATSGQ----------GLYEGLDWLSSNVSA  178 (180)
Q Consensus       154 ~~~~Sa~~~~----------~i~~~~~~l~~~~~~  178 (180)
                      ++++||++|.          |++.+++.+.+.+..
T Consensus       158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~  192 (594)
T TIGR01394       158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA  192 (594)
T ss_pred             EEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence            9999999996          799999999987653

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.86  E-value=3.2e-20  Score=145.11  Aligned_cols=153  Identities=22%  Similarity=0.205  Sum_probs=102.4

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCCccccc-----cccceeEEEEEE----------------cCeEEEEEEcCCCCCC
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-----PTIGFNVETVEY----------------KNVSFTVWDVGGQDKI   73 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~-----~t~~~~~~~~~~----------------~~~~~~i~D~~G~~~~   73 (180)
                      +..-|+++|++++|||||+|+|.+.......     .+++..+.....                ....+.+|||||++.|
T Consensus         3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f   82 (590)
T TIGR00491         3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF   82 (590)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence            3456999999999999999999977643222     233333322211                1124889999999999


Q ss_pred             hhhHHhhccccCEEEEEEECCCh---hhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--------------Hh
Q 030289           74 RPLWRHYFQNTHGLIFVVDSNDR---ERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--------------VS  136 (180)
Q Consensus        74 ~~~~~~~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--------------~~  136 (180)
                      ..++..+++.+|++++|+|+++.   .+++.+.     .+.   ..++|+++++||+|+.+...              .+
T Consensus        83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~-----~l~---~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~  154 (590)
T TIGR00491        83 TNLRKRGGALADLAILIVDINEGFKPQTQEALN-----ILR---MYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEI  154 (590)
T ss_pred             HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH-----HHH---HcCCCEEEEEECCCccchhhhccCchHHHHHHhhhH
Confidence            99999999999999999999863   3332221     111   23689999999999864210              00


Q ss_pred             HHH-----------hHhCCCcc----------CCcceEEEEeeccCCCChHHHHHHHHHH
Q 030289          137 EVT-----------DKLGLHSL----------RQRRWYIQAACATSGQGLYEGLDWLSSN  175 (180)
Q Consensus       137 ~~~-----------~~~~~~~~----------~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  175 (180)
                      .+.           ..+....+          .....+++++||++|+|++++..++...
T Consensus       155 ~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l  214 (590)
T TIGR00491       155 QVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL  214 (590)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence            000           01111100          1224689999999999999999988653

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PRK10218 GTP-binding protein; Provisional

Probab=99.85  E-value=5.4e-20  Score=144.24  Aligned_cols=159  Identities=19%  Similarity=0.163  Sum_probs=112.5

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC--cccc-----------------ccccceeEEEEEEcCeEEEEEEcCCCCCCh
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE--IVTT-----------------IPTIGFNVETVEYKNVSFTVWDVGGQDKIR   74 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~--~~~~-----------------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~   74 (180)
                      ++..||+++|+.++|||||+++|+...  +...                 ..|+......+..++.++.+|||||+..|.
T Consensus         3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~   82 (607)
T PRK10218          3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG   82 (607)
T ss_pred             CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH
Confidence            456799999999999999999998632  2111                 113333344566688999999999999999


Q ss_pred             hhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC---HhHHHhHhCCCcc--CC
Q 030289           75 PLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS---VSEVTDKLGLHSL--RQ  149 (180)
Q Consensus        75 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~---~~~~~~~~~~~~~--~~  149 (180)
                      ..+..+++.+|++++|+|+.+... .....++.....    .++|.++++||+|+.....   .+++...+.....  ..
T Consensus        83 ~~v~~~l~~aDg~ILVVDa~~G~~-~qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~  157 (607)
T PRK10218         83 GEVERVMSMVDSVLLVVDAFDGPM-PQTRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQ  157 (607)
T ss_pred             HHHHHHHHhCCEEEEEEecccCcc-HHHHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccc
Confidence            999999999999999999976422 223333333322    4678899999999875332   2333333321111  23


Q ss_pred             cceEEEEeeccCCC----------ChHHHHHHHHHHhh
Q 030289          150 RRWYIQAACATSGQ----------GLYEGLDWLSSNVS  177 (180)
Q Consensus       150 ~~~~~~~~Sa~~~~----------~i~~~~~~l~~~~~  177 (180)
                      ..++++.+||++|.          ++..+++.+.+.+.
T Consensus       158 ~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP  195 (607)
T PRK10218        158 LDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP  195 (607)
T ss_pred             cCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence            45789999999998          58889998888765

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.85  E-value=8.5e-21  Score=132.88  Aligned_cols=147  Identities=20%  Similarity=0.221  Sum_probs=97.0

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCC--cc--------------------------------ccccccceeEEEEEEcCeEEE
Q 030289           18 RILMVGLDAAGKTTILYKLKLGE--IV--------------------------------TTIPTIGFNVETVEYKNVSFT   63 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~--~~--------------------------------~~~~t~~~~~~~~~~~~~~~~   63 (180)
                      +|+++|+.++|||||+.+|+...  ..                                +...|.+.....+...+..+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            68999999999999999996321  00                                011144455566777899999


Q ss_pred             EEEcCCCCCChhhHHhhccccCEEEEEEECCChh-----hH-HHHHHHHHHHhcccccCCCeEEEEEecCCCCCC----C
Q 030289           64 VWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRE-----RI-GEAKDELHRMLSEDELREAVLLVFANKQDLPNA----M  133 (180)
Q Consensus        64 i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~----~  133 (180)
                      +|||||+..+...+...+..+|++++|+|+++..     .. ......+. ....  ....|+++++||+|+...    .
T Consensus        81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~iiivvNK~Dl~~~~~~~~  157 (219)
T cd01883          81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LART--LGVKQLIVAVNKMDDVTVNWSEE  157 (219)
T ss_pred             EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHH-HHHH--cCCCeEEEEEEccccccccccHH
Confidence            9999998877766777778899999999998742     11 11222222 2111  123689999999999742    1


Q ss_pred             CHhHHHhHh----CCCccCCcceEEEEeeccCCCChHH
Q 030289          134 SVSEVTDKL----GLHSLRQRRWYIQAACATSGQGLYE  167 (180)
Q Consensus       134 ~~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~i~~  167 (180)
                      ..+++.+.+    .........++++++||++|.|+++
T Consensus       158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~  195 (219)
T cd01883         158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIE  195 (219)
T ss_pred             HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCc
Confidence            122333222    2222233457899999999999873

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.85  E-value=1.7e-20  Score=142.07  Aligned_cols=160  Identities=16%  Similarity=0.115  Sum_probs=102.1

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCC----cc--ccccccceeEEEEEE--------------c------------Ce
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGE----IV--TTIPTIGFNVETVEY--------------K------------NV   60 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~----~~--~~~~t~~~~~~~~~~--------------~------------~~   60 (180)
                      ..++++|+++|+.++|||||+.+|.+..    ..  +...|+...+..+..              .            ..
T Consensus         6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (411)
T PRK04000          6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR   85 (411)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence            4678999999999999999999996531    11  112243332211110              0            25


Q ss_pred             EEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHh----
Q 030289           61 SFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVS----  136 (180)
Q Consensus        61 ~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~----  136 (180)
                      .+.+|||||++.+..........+|++++|+|++++.........+..+ ..  ....|+++|+||+|+.++....    
T Consensus        86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l-~~--~~i~~iiVVlNK~Dl~~~~~~~~~~~  162 (411)
T PRK04000         86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMAL-DI--IGIKNIVIVQNKIDLVSKERALENYE  162 (411)
T ss_pred             EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHH-HH--cCCCcEEEEEEeeccccchhHHHHHH
Confidence            7999999999887666666666789999999998542111111111111 11  1224689999999997643322    


Q ss_pred             HHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHHhh
Q 030289          137 EVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVS  177 (180)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  177 (180)
                      ++...+...  ...+.+++++||++|.|++++++.|.+.+.
T Consensus       163 ~i~~~l~~~--~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~  201 (411)
T PRK04000        163 QIKEFVKGT--VAENAPIIPVSALHKVNIDALIEAIEEEIP  201 (411)
T ss_pred             HHHHHhccc--cCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence            222211110  123568999999999999999999988654

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.84  E-value=3.5e-20  Score=119.00  Aligned_cols=135  Identities=20%  Similarity=0.251  Sum_probs=92.9

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCC----CCCChhhHHhhccccCEEEEEEEC
Q 030289           18 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGG----QDKIRPLWRHYFQNTHGLIFVVDS   93 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G----~~~~~~~~~~~~~~~~~~i~v~d~   93 (180)
                      ||+++|+.|+|||||+++|.+.+. .+..|..+.+.        =.++||||    ...+.........++|.++++.|+
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~-~~~KTq~i~~~--------~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~da   73 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEI-RYKKTQAIEYY--------DNTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDA   73 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCC-CcCccceeEec--------ccEEECChhheeCHHHHHHHHHHHhhCCEEEEEecC
Confidence            799999999999999999987663 33334333331        13479999    333444455555689999999999


Q ss_pred             CChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCC-CCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHH
Q 030289           94 NDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP-NAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWL  172 (180)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  172 (180)
                      +++.+.-  .-.+.      .....|+|-|+||+|+. ++.+.+...+.+....+.    .+|++|+.+|+||+++.++|
T Consensus        74 t~~~~~~--pP~fa------~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~----~if~vS~~~~eGi~eL~~~L  141 (143)
T PF10662_consen   74 TEPRSVF--PPGFA------SMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVK----EIFEVSAVTGEGIEELKDYL  141 (143)
T ss_pred             CCCCccC--Cchhh------cccCCCEEEEEECccCccchhhHHHHHHHHHHcCCC----CeEEEECCCCcCHHHHHHHH
Confidence            8754311  01111      11357899999999998 444555554454444332    46999999999999999987


Q ss_pred             H
Q 030289          173 S  173 (180)
Q Consensus       173 ~  173 (180)
                      -
T Consensus       142 ~  142 (143)
T PF10662_consen  142 E  142 (143)
T ss_pred             h
Confidence            4

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=1.4e-20  Score=121.20  Aligned_cols=162  Identities=34%  Similarity=0.593  Sum_probs=137.9

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEEC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDS   93 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   93 (180)
                      .+.=|++++|.-|+|||||++.|...+.....||.-+....+.+.+.+++-+|.+|+...+..|..|+..+|++++.+|+
T Consensus        18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda   97 (193)
T KOG0077|consen   18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDA   97 (193)
T ss_pred             ccCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeeh
Confidence            56789999999999999999999988877788888888888888999999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCcc------------CCcceEEEEeeccC
Q 030289           94 NDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSL------------RQRRWYIQAACATS  161 (180)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~Sa~~  161 (180)
                      .|.+.+.+....+...+........|+++.+||+|.+.+...++....+++...            ..+...+|.||...
T Consensus        98 ~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~  177 (193)
T KOG0077|consen   98 YDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVR  177 (193)
T ss_pred             hhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEc
Confidence            999999999988888877666678999999999999987766665554433211            23456789999999


Q ss_pred             CCChHHHHHHHHHH
Q 030289          162 GQGLYEGLDWLSSN  175 (180)
Q Consensus       162 ~~~i~~~~~~l~~~  175 (180)
                      +.+--+.|.|+.+.
T Consensus       178 ~~gy~e~fkwl~qy  191 (193)
T KOG0077|consen  178 KMGYGEGFKWLSQY  191 (193)
T ss_pred             cCccceeeeehhhh
Confidence            88888888877654

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.84  E-value=5.8e-20  Score=123.37  Aligned_cols=151  Identities=19%  Similarity=0.186  Sum_probs=94.7

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEE--EEEEcCeEEEEEEcCCCCCC----------hhhHHhhcc--
Q 030289           18 RILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE--TVEYKNVSFTVWDVGGQDKI----------RPLWRHYFQ--   82 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~--~~~~~~~~~~i~D~~G~~~~----------~~~~~~~~~--   82 (180)
                      .|+++|++|+|||||+|.+.++. .....++.+....  .+... ..+.+|||||....          ......++.  
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~   79 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENR   79 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEcc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHhC
Confidence            38999999999999999999544 3333344333222  22223 38999999995432          233334443  


Q ss_pred             -ccCEEEEEEECCChhhH--HHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCcc-CCcceEEEEee
Q 030289           83 -NTHGLIFVVDSNDRERI--GEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSL-RQRRWYIQAAC  158 (180)
Q Consensus        83 -~~~~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S  158 (180)
                       +.+++++++|..+....  ..+.+|+..       .+.|+++++||+|+.................. .....+++++|
T Consensus        80 ~~~~~~~~v~d~~~~~~~~~~~~~~~l~~-------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~S  152 (170)
T cd01876          80 ENLKGVVLLIDSRHGPTEIDLEMLDWLEE-------LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFS  152 (170)
T ss_pred             hhhhEEEEEEEcCcCCCHhHHHHHHHHHH-------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEe
Confidence             45788999998754221  223333332       24789999999998654332222222110000 12345799999


Q ss_pred             ccCCCChHHHHHHHHHHh
Q 030289          159 ATSGQGLYEGLDWLSSNV  176 (180)
Q Consensus       159 a~~~~~i~~~~~~l~~~~  176 (180)
                      ++++.+++++++++.+.+
T Consensus       153 a~~~~~~~~l~~~l~~~~  170 (170)
T cd01876         153 SLKGQGIDELRALIEKWL  170 (170)
T ss_pred             cCCCCCHHHHHHHHHHhC
Confidence            999999999999998753

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.84  E-value=1.8e-19  Score=141.35  Aligned_cols=155  Identities=21%  Similarity=0.221  Sum_probs=102.6

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCCcccccc-----ccceeEEEEEE---------c-------CeEEEEEEcCCCC
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIGFNVETVEY---------K-------NVSFTVWDVGGQD   71 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~-----t~~~~~~~~~~---------~-------~~~~~i~D~~G~~   71 (180)
                      +.+...|+++|++++|||||+++|.+.......+     +++..+.....         .       -..+.+|||||++
T Consensus         3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e   82 (586)
T PRK04004          3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE   82 (586)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence            3466789999999999999999998655332222     34433322211         0       0127899999999


Q ss_pred             CChhhHHhhccccCEEEEEEECCC---hhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--------------
Q 030289           72 KIRPLWRHYFQNTHGLIFVVDSND---RERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--------------  134 (180)
Q Consensus        72 ~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--------------  134 (180)
                      .|...+...+..+|++++|+|+++   +.+++.+.    .+ .   ..++|+++++||+|+.....              
T Consensus        83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~-~---~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~  154 (586)
T PRK04004         83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAIN----IL-K---RRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQ  154 (586)
T ss_pred             HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HH-H---HcCCCEEEEEECcCCchhhhhhcCchHHHHHhhh
Confidence            999888888899999999999986   33333322    11 1   14689999999999852110              


Q ss_pred             Hh-----------HHHhHhCCCcc----------CCcceEEEEeeccCCCChHHHHHHHHHH
Q 030289          135 VS-----------EVTDKLGLHSL----------RQRRWYIQAACATSGQGLYEGLDWLSSN  175 (180)
Q Consensus       135 ~~-----------~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  175 (180)
                      ..           ++...+....+          ....++++++||++|+|++++++.+...
T Consensus       155 ~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~  216 (586)
T PRK04004        155 SQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGL  216 (586)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHH
Confidence            00           01111111111          1135789999999999999999887643

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.84  E-value=8.7e-20  Score=127.75  Aligned_cols=152  Identities=23%  Similarity=0.235  Sum_probs=98.3

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCCccc-----------------cccc-------cceeE-----------------EEEE
Q 030289           18 RILMVGLDAAGKTTILYKLKLGEIVT-----------------TIPT-------IGFNV-----------------ETVE   56 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~~~~-----------------~~~t-------~~~~~-----------------~~~~   56 (180)
                      ||+++|+.++|||||+++|..+.+..                 ...|       .++..                 ..+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            68999999999999999998643211                 0011       11110                 2233


Q ss_pred             EcCeEEEEEEcCCCCCChhhHHhhcc--ccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC
Q 030289           57 YKNVSFTVWDVGGQDKIRPLWRHYFQ--NTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS  134 (180)
Q Consensus        57 ~~~~~~~i~D~~G~~~~~~~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~  134 (180)
                      ..+..+.++||||+.+|.......+.  .+|++++|+|+.....  .....+..++..   .++|+++|+||+|+.+...
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~--~~d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~  155 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII--GMTKEHLGLALA---LNIPVFVVVTKIDLAPANI  155 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc--HHHHHHHHHHHH---cCCCEEEEEECccccCHHH
Confidence            35678999999999988666555554  6899999999875432  222222222222   4678999999999876433


Q ss_pred             Hh----HHHhHhCCCcc---------------------CCcceEEEEeeccCCCChHHHHHHHHH
Q 030289          135 VS----EVTDKLGLHSL---------------------RQRRWYIQAACATSGQGLYEGLDWLSS  174 (180)
Q Consensus       135 ~~----~~~~~~~~~~~---------------------~~~~~~~~~~Sa~~~~~i~~~~~~l~~  174 (180)
                      ..    ++.+.+.....                     .....|+|.+|+.+|+|+++++..|..
T Consensus       156 ~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         156 LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence            22    23333331111                     122448999999999999999988754

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.83  E-value=7.9e-20  Score=143.98  Aligned_cols=155  Identities=19%  Similarity=0.131  Sum_probs=104.5

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCC---c-cc--cccccceeEEEEEE-cCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289           18 RILMVGLDAAGKTTILYKLKLGE---I-VT--TIPTIGFNVETVEY-KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV   90 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~---~-~~--~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (180)
                      -|+++|+.++|||||+++|.+..   . .+  ...|++..+..+.. ++..+.+|||||++.|.......+.++|++++|
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLV   81 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLV   81 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEE
Confidence            58899999999999999998632   1 12  24566665555544 456789999999999877777888999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhcccccCCCe-EEEEEecCCCCCCCCHhHHHhHhCCCc--cCCcceEEEEeeccCCCChHH
Q 030289           91 VDSNDRERIGEAKDELHRMLSEDELREAV-LLVFANKQDLPNAMSVSEVTDKLGLHS--LRQRRWYIQAACATSGQGLYE  167 (180)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iiiv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~i~~  167 (180)
                      +|+++.-. ......+ .++..   .++| +++|+||+|+.++...+....+.....  ..-...+++++||++|.|+++
T Consensus        82 Vda~eg~~-~qT~ehl-~il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~  156 (614)
T PRK10512         82 VACDDGVM-AQTREHL-AILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA  156 (614)
T ss_pred             EECCCCCc-HHHHHHH-HHHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence            99975311 1112222 22222   2344 689999999976433332222211100  001135899999999999999


Q ss_pred             HHHHHHHHhh
Q 030289          168 GLDWLSSNVS  177 (180)
Q Consensus       168 ~~~~l~~~~~  177 (180)
                      +++.|.+...
T Consensus       157 L~~~L~~~~~  166 (614)
T PRK10512        157 LREHLLQLPE  166 (614)
T ss_pred             HHHHHHHhhc
Confidence            9999987543

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.83  E-value=1.7e-20  Score=119.54  Aligned_cols=162  Identities=16%  Similarity=0.261  Sum_probs=124.4

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeE--EEEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV--ETVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLI   88 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   88 (180)
                      .-..||.++|++..|||||+-+..+++. .++..+.|++.  .++.+  ..+.+++||.+|++++..+.+....++-+++
T Consensus        18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIl   97 (205)
T KOG1673|consen   18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAIL   97 (205)
T ss_pred             ceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEE
Confidence            3468999999999999999999988874 45556777654  34444  5678999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChH
Q 030289           89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLY  166 (180)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  166 (180)
                      ++||.+.++++..+..|+.+..... ..-+| ++|++|.|..-+..  .++--.......++-.+++.|+||+-.+.|++
T Consensus        98 FmFDLt~r~TLnSi~~WY~QAr~~N-ktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~  175 (205)
T KOG1673|consen   98 FMFDLTRRSTLNSIKEWYRQARGLN-KTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQ  175 (205)
T ss_pred             EEEecCchHHHHHHHHHHHHHhccC-Cccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHH
Confidence            9999999999999999999986543 23455 56799999643222  22211122222334457789999999999999


Q ss_pred             HHHHHHHHHhh
Q 030289          167 EGLDWLSSNVS  177 (180)
Q Consensus       167 ~~~~~l~~~~~  177 (180)
                      .+|..+.-++-
T Consensus       176 KIFK~vlAklF  186 (205)
T KOG1673|consen  176 KIFKIVLAKLF  186 (205)
T ss_pred             HHHHHHHHHHh
Confidence            99998877654

>cd04169 RF3 RF3 subfamily

Probab=99.82  E-value=8.6e-19  Score=125.75  Aligned_cols=110  Identities=20%  Similarity=0.247  Sum_probs=80.1

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCC--ccc-----------------------cccccceeEEEEEEcCeEEEEEEcCCCC
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGE--IVT-----------------------TIPTIGFNVETVEYKNVSFTVWDVGGQD   71 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~--~~~-----------------------~~~t~~~~~~~~~~~~~~~~i~D~~G~~   71 (180)
                      -+|+++|++|+|||||+++|+...  ...                       ...++......+...+.++.+|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            479999999999999999997421  110                       0112334445677789999999999999


Q ss_pred             CChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289           72 KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN  131 (180)
Q Consensus        72 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~  131 (180)
                      .|......+++.+|++++|+|+++... .....++... .   ..++|+++++||+|+..
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~-~~~~~i~~~~-~---~~~~P~iivvNK~D~~~  137 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVE-PQTRKLFEVC-R---LRGIPIITFINKLDREG  137 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCcc-HHHHHHHHHH-H---hcCCCEEEEEECCccCC
Confidence            888777788899999999999976432 2222333322 2   24689999999999765

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PRK12736 elongation factor Tu; Reviewed

Probab=99.82  E-value=1.7e-19  Score=136.19  Aligned_cols=160  Identities=18%  Similarity=0.143  Sum_probs=105.9

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCCc-------c------------ccccccceeEEEEEEcCeEEEEEEcCCCCCC
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGEI-------V------------TTIPTIGFNVETVEYKNVSFTVWDVGGQDKI   73 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~-------~------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~   73 (180)
                      ..++++|+++|+.++|||||+++|++...       .            +...|++.....+..++..+.++||||+++|
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence            56789999999999999999999985310       0            1122444444445556778999999999988


Q ss_pred             hhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCe-EEEEEecCCCCCCCCHh-----HHHhHhCCCcc
Q 030289           74 RPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV-LLVFANKQDLPNAMSVS-----EVTDKLGLHSL  147 (180)
Q Consensus        74 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iiiv~nK~D~~~~~~~~-----~~~~~~~~~~~  147 (180)
                      .......+..+|++++|+|+.+.-. ......+... ..   .++| +++++||+|+.+.....     ++...+....+
T Consensus        89 ~~~~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~-~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~  163 (394)
T PRK12736         89 VKNMITGAAQMDGAILVVAATDGPM-PQTREHILLA-RQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDF  163 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHH-HH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCC
Confidence            7777777788999999999975321 1222222222 22   3566 78899999987533221     22222222222


Q ss_pred             CCcceEEEEeeccCCC--------ChHHHHHHHHHHhh
Q 030289          148 RQRRWYIQAACATSGQ--------GLYEGLDWLSSNVS  177 (180)
Q Consensus       148 ~~~~~~~~~~Sa~~~~--------~i~~~~~~l~~~~~  177 (180)
                      ....++++++||++|.        +++++++.+.+.+.
T Consensus       164 ~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp  201 (394)
T PRK12736        164 PGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP  201 (394)
T ss_pred             CcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence            2234689999999983        57788888776653

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.82  E-value=1.9e-19  Score=125.52  Aligned_cols=157  Identities=21%  Similarity=0.309  Sum_probs=104.2

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCC----ccccccccceeEEEEEE-cCeEEEEEEcCCCCCChh-----hHHhhccccCEE
Q 030289           18 RILMVGLDAAGKTTILYKLKLGE----IVTTIPTIGFNVETVEY-KNVSFTVWDVGGQDKIRP-----LWRHYFQNTHGL   87 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~----~~~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~-----~~~~~~~~~~~~   87 (180)
                      ||+++|+.|+||||+.+.++.+-    .....+|..+....+.. ....+.+||+||+..+..     .....+++++++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L   80 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL   80 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence            79999999999999999998765    22335788888888875 678999999999876533     367788999999


Q ss_pred             EEEEECCChh---hHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHH----HhHhCCCccCCc---ceEEEEe
Q 030289           88 IFVVDSNDRE---RIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEV----TDKLGLHSLRQR---RWYIQAA  157 (180)
Q Consensus        88 i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~----~~~~~~~~~~~~---~~~~~~~  157 (180)
                      |||+|+.+.+   .+..+...+..+...  .++..+.++++|+|+..+....+.    .+.+.. .+.+.   .+.++.|
T Consensus        81 IyV~D~qs~~~~~~l~~~~~~i~~l~~~--sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~-~~~~~~~~~~~~~~T  157 (232)
T PF04670_consen   81 IYVFDAQSDDYDEDLAYLSDCIEALRQY--SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRD-ELEDLGIEDITFFLT  157 (232)
T ss_dssp             EEEEETT-STCHHHHHHHHHHHHHHHHH--STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHH-HHHHTT-TSEEEEEE
T ss_pred             EEEEEcccccHHHHHHHHHHHHHHHHHh--CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHH-HhhhccccceEEEec
Confidence            9999998443   334444444444333  478899999999998764322211    111111 11111   4889999


Q ss_pred             eccCCCChHHHHHHHHHHhhh
Q 030289          158 CATSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       158 Sa~~~~~i~~~~~~l~~~~~~  178 (180)
                      |..+ ..+-++|..+++.+..
T Consensus       158 SI~D-~Sly~A~S~Ivq~LiP  177 (232)
T PF04670_consen  158 SIWD-ESLYEAWSKIVQKLIP  177 (232)
T ss_dssp             -TTS-THHHHHHHHHHHTTST
T ss_pred             cCcC-cHHHHHHHHHHHHHcc
Confidence            9999 4899999999998764

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.82  E-value=9.8e-20  Score=121.95  Aligned_cols=123  Identities=28%  Similarity=0.487  Sum_probs=80.7

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEE---cCeEEEEEEcCCCCCChhhHHh---hccccCEEE
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY---KNVSFTVWDVGGQDKIRPLWRH---YFQNTHGLI   88 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~---~~~~~~i~D~~G~~~~~~~~~~---~~~~~~~~i   88 (180)
                      +.-.|+++|++|+|||+|+.+|..+........+..+. .+..   .+..+.++|+|||++.+.....   +..++.++|
T Consensus         2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II   80 (181)
T PF09439_consen    2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII   80 (181)
T ss_dssp             ---EEEEE-STTSSHHHHHHHHHHSS---B---SSEEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred             CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence            34579999999999999999999987555554443333 2333   4568999999999999765444   478899999


Q ss_pred             EEEECCC-hhhHHHHHHHHHHHhccc--ccCCCeEEEEEecCCCCCCCCHhHH
Q 030289           89 FVVDSND-RERIGEAKDELHRMLSED--ELREAVLLVFANKQDLPNAMSVSEV  138 (180)
Q Consensus        89 ~v~d~~~-~~~~~~~~~~~~~~~~~~--~~~~~~iiiv~nK~D~~~~~~~~~~  138 (180)
                      ||+|++. ...+....+++.+++...  ....+|++|++||.|+........+
T Consensus        81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~I  133 (181)
T PF09439_consen   81 FVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKI  133 (181)
T ss_dssp             EEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHH
T ss_pred             EEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHH
Confidence            9999974 556666677766666543  2467999999999999876554433

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.82  E-value=1e-18  Score=125.99  Aligned_cols=109  Identities=22%  Similarity=0.246  Sum_probs=80.4

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCC--cc-------------------ccccccceeEEEEEEcCeEEEEEEcCCCCCChhh
Q 030289           18 RILMVGLDAAGKTTILYKLKLGE--IV-------------------TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPL   76 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~--~~-------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   76 (180)
                      +|+++|++|+|||||+++|+...  ..                   ....++......+...+.++.+|||||+..+...
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~   80 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE   80 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence            68999999999999999997432  10                   0122344455667778899999999999888777


Q ss_pred             HHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289           77 WRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN  131 (180)
Q Consensus        77 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~  131 (180)
                      +..+++.+|++++|+|+++......... +... .   ..++|.++++||+|...
T Consensus        81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~-~~~~-~---~~~~p~iivvNK~D~~~  130 (268)
T cd04170          81 TRAALRAADAALVVVSAQSGVEVGTEKL-WEFA-D---EAGIPRIIFINKMDRER  130 (268)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHHHH-HHHH-H---HcCCCEEEEEECCccCC
Confidence            8889999999999999987544332222 2222 1   24689999999999775

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=6.3e-19  Score=118.29  Aligned_cols=162  Identities=25%  Similarity=0.401  Sum_probs=122.4

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhcc---ccCEEEEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQ---NTHGLIFV   90 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---~~~~~i~v   90 (180)
                      ..+-.|+++|+.++|||+|+-+|..+......+.+..+..++.......+++|.||+.+.+.-...+++   ++.+++||
T Consensus        36 s~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFV  115 (238)
T KOG0090|consen   36 SKQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFV  115 (238)
T ss_pred             ccCCcEEEEecCCCCceeeeeehhcCCccCeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEEE
Confidence            344679999999999999999999888777777888888899888888999999999999877777777   78999999


Q ss_pred             EECC-ChhhHHHHHHHHHHHhccc--ccCCCeEEEEEecCCCCCCCCHhHHHhHh-------------------------
Q 030289           91 VDSN-DRERIGEAKDELHRMLSED--ELREAVLLVFANKQDLPNAMSVSEVTDKL-------------------------  142 (180)
Q Consensus        91 ~d~~-~~~~~~~~~~~~~~~~~~~--~~~~~~iiiv~nK~D~~~~~~~~~~~~~~-------------------------  142 (180)
                      +|+. ..........++.+++...  ...++|+++++||.|+......+.+.+.+                         
T Consensus       116 VDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~  195 (238)
T KOG0090|consen  116 VDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKD  195 (238)
T ss_pred             EeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Confidence            9975 2344455555555555433  45689999999999998754433222111                         


Q ss_pred             ------CCC----ccCCcceEEEEeeccCCCChHHHHHHHHHHh
Q 030289          143 ------GLH----SLRQRRWYIQAACATSGQGLYEGLDWLSSNV  176 (180)
Q Consensus       143 ------~~~----~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  176 (180)
                            +..    ......+.|.++|++++ +++++-+|+.+.+
T Consensus       196 ~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l  238 (238)
T KOG0090|consen  196 FTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL  238 (238)
T ss_pred             ccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence                  001    11235678999999998 8999999987753

>PRK12735 elongation factor Tu; Reviewed

Probab=99.81  E-value=3.9e-19  Score=134.31  Aligned_cols=158  Identities=18%  Similarity=0.146  Sum_probs=102.7

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcC-----C--cc------------ccccccceeEEEEEEcCeEEEEEEcCCCCCCh
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLG-----E--IV------------TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIR   74 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~-----~--~~------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~   74 (180)
                      +++++|+++|++++|||||+++|++.     .  ..            ....|++.....+..++.++.++||||+..|.
T Consensus        10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~   89 (396)
T PRK12735         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV   89 (396)
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence            56789999999999999999999852     1  00            11124444444455567789999999998887


Q ss_pred             hhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEE-EEEecCCCCCCCCH-h----HHHhHhCCCccC
Q 030289           75 PLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLL-VFANKQDLPNAMSV-S----EVTDKLGLHSLR  148 (180)
Q Consensus        75 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii-iv~nK~D~~~~~~~-~----~~~~~~~~~~~~  148 (180)
                      ......+..+|++++|+|+.+... ......+... ..   .++|.+ +++||+|+.+.... +    ++...+....+.
T Consensus        90 ~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~-~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~  164 (396)
T PRK12735         90 KNMITGAAQMDGAILVVSAADGPM-PQTREHILLA-RQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP  164 (396)
T ss_pred             HHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHH-HH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCC
Confidence            777777889999999999975321 1222333222 21   356654 67999999753221 1    222222111111


Q ss_pred             CcceEEEEeeccCCC----------ChHHHHHHHHHHh
Q 030289          149 QRRWYIQAACATSGQ----------GLYEGLDWLSSNV  176 (180)
Q Consensus       149 ~~~~~~~~~Sa~~~~----------~i~~~~~~l~~~~  176 (180)
                      ...++++++|+.++.          ++.++++.+.+.+
T Consensus       165 ~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~  202 (396)
T PRK12735        165 GDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI  202 (396)
T ss_pred             cCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence            224789999999984          5777777777654

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.81  E-value=2.3e-18  Score=123.63  Aligned_cols=109  Identities=18%  Similarity=0.114  Sum_probs=80.8

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCC--cc-------------------ccccccceeEEEEEEcCeEEEEEEcCCCCCChhh
Q 030289           18 RILMVGLDAAGKTTILYKLKLGE--IV-------------------TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPL   76 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~--~~-------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   76 (180)
                      ||+++|++|+|||||+++|+...  ..                   ....|+......+...+.++.+|||||+..+...
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~   80 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE   80 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence            68999999999999999996321  10                   1122445556677778999999999999988888


Q ss_pred             HHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289           77 WRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN  131 (180)
Q Consensus        77 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~  131 (180)
                      +..+++.+|++++|+|+.+...- .....+....    ..++|+++++||+|+.+
T Consensus        81 ~~~~l~~aD~ailVVDa~~g~~~-~t~~~~~~~~----~~~~p~ivviNK~D~~~  130 (270)
T cd01886          81 VERSLRVLDGAVAVFDAVAGVEP-QTETVWRQAD----RYNVPRIAFVNKMDRTG  130 (270)
T ss_pred             HHHHHHHcCEEEEEEECCCCCCH-HHHHHHHHHH----HcCCCEEEEEECCCCCC
Confidence            89999999999999999764321 1222233222    24688999999999864

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.80  E-value=4.3e-19  Score=122.39  Aligned_cols=157  Identities=15%  Similarity=0.110  Sum_probs=94.3

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCCcc-cccccccee-----EEEEEE-cCeEEEEEEcCCCCCChhhH-----Hhhccc
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN-----VETVEY-KNVSFTVWDVGGQDKIRPLW-----RHYFQN   83 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~-----~~~~~~-~~~~~~i~D~~G~~~~~~~~-----~~~~~~   83 (180)
                      ++||+++|++|+|||||+|+|++.... ...++.+..     ...+.. ....+.+||+||........     ...+.+
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~   80 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE   80 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence            478999999999999999999985522 222222211     111111 13478999999975432222     223567


Q ss_pred             cCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC---------HhHHHhHhCCCcc---C---
Q 030289           84 THGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS---------VSEVTDKLGLHSL---R---  148 (180)
Q Consensus        84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~---------~~~~~~~~~~~~~---~---  148 (180)
                      +|+++++.+.    ++......+...+..   .+.|+++|+||+|+.....         .+++.+.+.....   .   
T Consensus        81 ~d~~l~v~~~----~~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~  153 (197)
T cd04104          81 YDFFIIISST----RFSSNDVKLAKAIQC---MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG  153 (197)
T ss_pred             cCEEEEEeCC----CCCHHHHHHHHHHHH---hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence            8988887432    233444333333332   2578999999999843111         2222222211111   1   


Q ss_pred             CcceEEEEeecc--CCCChHHHHHHHHHHhhhc
Q 030289          149 QRRWYIQAACAT--SGQGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       149 ~~~~~~~~~Sa~--~~~~i~~~~~~l~~~~~~~  179 (180)
                      ....++|.+|+.  .+.++..+.+.+...+.++
T Consensus       154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~  186 (197)
T cd04104         154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH  186 (197)
T ss_pred             CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence            122379999998  5789999999999988754

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>CHL00071 tufA elongation factor Tu

Probab=99.80  E-value=9.8e-19  Score=132.68  Aligned_cols=148  Identities=19%  Similarity=0.147  Sum_probs=98.0

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCCc-----------------c--ccccccceeEEEEEEcCeEEEEEEcCCCCCC
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGEI-----------------V--TTIPTIGFNVETVEYKNVSFTVWDVGGQDKI   73 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~-----------------~--~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~   73 (180)
                      +.++++|+++|++++|||||+++|++...                 .  +...|++.....+..++.++.++||||+..|
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~   88 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY   88 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence            57789999999999999999999986410                 0  0112333444445557788999999999888


Q ss_pred             hhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCe-EEEEEecCCCCCCCCH-h----HHHhHhCCCcc
Q 030289           74 RPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV-LLVFANKQDLPNAMSV-S----EVTDKLGLHSL  147 (180)
Q Consensus        74 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iiiv~nK~D~~~~~~~-~----~~~~~~~~~~~  147 (180)
                      .......+..+|++++|+|+...-. ......+.. +..   .++| +++++||+|+.+.... +    ++...+....+
T Consensus        89 ~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~-~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~  163 (409)
T CHL00071         89 VKNMITGAAQMDGAILVVSAADGPM-PQTKEHILL-AKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDF  163 (409)
T ss_pred             HHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHH-HHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            7777778889999999999975321 222222322 222   3567 7789999999753221 1    22222222222


Q ss_pred             CCcceEEEEeeccCCCCh
Q 030289          148 RQRRWYIQAACATSGQGL  165 (180)
Q Consensus       148 ~~~~~~~~~~Sa~~~~~i  165 (180)
                      ....++++++|+.+|.|+
T Consensus       164 ~~~~~~ii~~Sa~~g~n~  181 (409)
T CHL00071        164 PGDDIPIVSGSALLALEA  181 (409)
T ss_pred             CCCcceEEEcchhhcccc
Confidence            223579999999998743

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.80  E-value=4.1e-18  Score=131.88  Aligned_cols=149  Identities=20%  Similarity=0.245  Sum_probs=111.3

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCC-cccccc--ccceeEEEEEEcCeEEEEEEcCCCCC------ChhhHHhhcc--c
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGE-IVTTIP--TIGFNVETVEYKNVSFTVWDVGGQDK------IRPLWRHYFQ--N   83 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~------~~~~~~~~~~--~   83 (180)
                      +..+|+++|+||+|||||+|+|++.. ....-|  |++.....+..++.+++++|.||--.      -+...+.++.  +
T Consensus         2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~   81 (653)
T COG0370           2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK   81 (653)
T ss_pred             CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence            45679999999999999999999877 444444  77777888888999999999999322      1344555554  4


Q ss_pred             cCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC----CCHhHHHhHhCCCccCCcceEEEEeec
Q 030289           84 THGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA----MSVSEVTDKLGLHSLRQRRWYIQAACA  159 (180)
Q Consensus        84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (180)
                      .|+++-|+|+++.+.--.+.   .++.+    -+.|++++.|++|..+.    .+.+.+.+.+        ++|++++||
T Consensus        82 ~D~ivnVvDAtnLeRnLylt---lQLlE----~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~L--------GvPVv~tvA  146 (653)
T COG0370          82 PDLIVNVVDATNLERNLYLT---LQLLE----LGIPMILALNMIDEAKKRGIRIDIEKLSKLL--------GVPVVPTVA  146 (653)
T ss_pred             CCEEEEEcccchHHHHHHHH---HHHHH----cCCCeEEEeccHhhHHhcCCcccHHHHHHHh--------CCCEEEEEe
Confidence            69999999998765433333   33332    37889999999997653    3444555444        467999999


Q ss_pred             cCCCChHHHHHHHHHHhhh
Q 030289          160 TSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       160 ~~~~~i~~~~~~l~~~~~~  178 (180)
                      ++|.|++++...+.+...+
T Consensus       147 ~~g~G~~~l~~~i~~~~~~  165 (653)
T COG0370         147 KRGEGLEELKRAIIELAES  165 (653)
T ss_pred             ecCCCHHHHHHHHHHhccc
Confidence            9999999999999875443

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.79  E-value=6e-19  Score=133.37  Aligned_cols=146  Identities=18%  Similarity=0.131  Sum_probs=95.0

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcC-----C--c------------cccccccceeEEEEEEcCeEEEEEEcCCCCCC
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLG-----E--I------------VTTIPTIGFNVETVEYKNVSFTVWDVGGQDKI   73 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~-----~--~------------~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~   73 (180)
                      .+++++|+++|+.++|||||+++|++.     +  .            .+...|++.....+..++..+.+|||||+++|
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f   88 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY   88 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence            577899999999999999999999732     0  0            01123555555555556788999999999988


Q ss_pred             hhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeE-EEEEecCCCCCCCCHh-----HHHhHhCCCcc
Q 030289           74 RPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVL-LVFANKQDLPNAMSVS-----EVTDKLGLHSL  147 (180)
Q Consensus        74 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i-iiv~nK~D~~~~~~~~-----~~~~~~~~~~~  147 (180)
                      ..........+|++++|+|+.+.-. ......+... ..   .++|. ++++||+|+.+.....     ++...+.....
T Consensus        89 ~~~~~~~~~~~D~~ilVvda~~g~~-~qt~e~l~~~-~~---~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~  163 (394)
T TIGR00485        89 VKNMITGAAQMDGAILVVSATDGPM-PQTREHILLA-RQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDF  163 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHH-HH---cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCC
Confidence            7776667778999999999986321 1122222222 22   24554 5789999987532211     22222222222


Q ss_pred             CCcceEEEEeeccCCC
Q 030289          148 RQRRWYIQAACATSGQ  163 (180)
Q Consensus       148 ~~~~~~~~~~Sa~~~~  163 (180)
                      ....++++++|+.++.
T Consensus       164 ~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       164 PGDDTPIIRGSALKAL  179 (394)
T ss_pred             CccCccEEECcccccc
Confidence            2224789999999875

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK13351 elongation factor G; Reviewed

Probab=99.79  E-value=3.7e-18  Score=137.20  Aligned_cols=114  Identities=17%  Similarity=0.099  Sum_probs=88.9

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCC--------------cc-------ccccccceeEEEEEEcCeEEEEEEcCCCC
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGE--------------IV-------TTIPTIGFNVETVEYKNVSFTVWDVGGQD   71 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~--------------~~-------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~   71 (180)
                      .++..||+|+|+.|+|||||+++|+...              ..       ++..|+......+...+..+.+|||||+.
T Consensus         5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~   84 (687)
T PRK13351          5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHI   84 (687)
T ss_pred             cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcH
Confidence            3567899999999999999999997421              00       13346666677788889999999999999


Q ss_pred             CChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289           72 KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN  131 (180)
Q Consensus        72 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~  131 (180)
                      ++...+..+++.+|++++|+|+++....+....| ....    ..++|+++++||+|+..
T Consensus        85 df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~----~~~~p~iiviNK~D~~~  139 (687)
T PRK13351         85 DFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQAD----RYGIPRLIFINKMDRVG  139 (687)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHH----hcCCCEEEEEECCCCCC
Confidence            9988899999999999999999876554443333 2221    23689999999999876

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.79  E-value=5.2e-18  Score=131.62  Aligned_cols=113  Identities=19%  Similarity=0.239  Sum_probs=82.2

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC--cc----------------cc-------ccccceeEEEEEEcCeEEEEEEcC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE--IV----------------TT-------IPTIGFNVETVEYKNVSFTVWDVG   68 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~--~~----------------~~-------~~t~~~~~~~~~~~~~~~~i~D~~   68 (180)
                      .+..+|+|+|+.++|||||+++|+...  ..                ++       ..++......+..++..+.+||||
T Consensus         8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP   87 (526)
T PRK00741          8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP   87 (526)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence            457799999999999999999997311  00                00       112223345577789999999999


Q ss_pred             CCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289           69 GQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN  131 (180)
Q Consensus        69 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~  131 (180)
                      |+..|......+++.+|++++|+|+++.-. .....++... .   ..++|+++++||+|+..
T Consensus        88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~-~---~~~iPiiv~iNK~D~~~  145 (526)
T PRK00741         88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVE-PQTRKLMEVC-R---LRDTPIFTFINKLDRDG  145 (526)
T ss_pred             CchhhHHHHHHHHHHCCEEEEEEecCCCCC-HHHHHHHHHH-H---hcCCCEEEEEECCcccc
Confidence            999988877888999999999999986422 1223333322 2   25789999999999865

>cd04167 Snu114p Snu114p subfamily

Probab=99.79  E-value=1.9e-18  Score=120.68  Aligned_cols=108  Identities=17%  Similarity=0.135  Sum_probs=76.4

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCCccc------------c----------ccccceeEEEEEE-----cCeEEEEEEcCCC
Q 030289           18 RILMVGLDAAGKTTILYKLKLGEIVT------------T----------IPTIGFNVETVEY-----KNVSFTVWDVGGQ   70 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~~~~------------~----------~~t~~~~~~~~~~-----~~~~~~i~D~~G~   70 (180)
                      +|+++|+.|+|||||+++|+......            +          ..++......+..     ..+.+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            68999999999999999998643110            0          0111122222222     3478999999999


Q ss_pred             CCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCC
Q 030289           71 DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP  130 (180)
Q Consensus        71 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~  130 (180)
                      ..+......++..+|++++|+|+.+..+.. ...++.....    .+.|+++|+||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~-~~~~~~~~~~----~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSN-TERLIRHAIL----EGLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHH----cCCCEEEEEECcccC
Confidence            999888888999999999999998665432 2333333322    358999999999975

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.79  E-value=1.3e-18  Score=132.85  Aligned_cols=150  Identities=17%  Similarity=0.159  Sum_probs=102.0

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCC--c--------------------------------cccccccceeEEEEEEc
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGE--I--------------------------------VTTIPTIGFNVETVEYK   58 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~--~--------------------------------~~~~~t~~~~~~~~~~~   58 (180)
                      ...+++|+++|+.++|||||+.+|+...  .                                .+...|++.....+..+
T Consensus         4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~   83 (447)
T PLN00043          4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT   83 (447)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence            5678999999999999999999886311  0                                00112444555556668


Q ss_pred             CeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHH-------HHHHHHHHHhcccccCCC-eEEEEEecCCCC
Q 030289           59 NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIG-------EAKDELHRMLSEDELREA-VLLVFANKQDLP  130 (180)
Q Consensus        59 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~-------~~~~~~~~~~~~~~~~~~-~iiiv~nK~D~~  130 (180)
                      +..+.++|+||+++|.......+..+|++++|+|+++. .++       .....+. +...   .++ ++++++||+|+.
T Consensus        84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~-~~~~---~gi~~iIV~vNKmD~~  158 (447)
T PLN00043         84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHAL-LAFT---LGVKQMICCCNKMDAT  158 (447)
T ss_pred             CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHH-HHHH---cCCCcEEEEEEcccCC
Confidence            88999999999999998889999999999999999852 221       2222222 2222   345 578899999976


Q ss_pred             CC----CC----HhHHHhHhCCCccCCcceEEEEeeccCCCChHH
Q 030289          131 NA----MS----VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYE  167 (180)
Q Consensus       131 ~~----~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  167 (180)
                      +.    ..    .+++...+....+....++|+++|+++|+|+.+
T Consensus       159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            21    11    222332222222233357899999999999854

>PLN03126 Elongation factor Tu; Provisional

Probab=99.79  E-value=1.7e-18  Score=132.76  Aligned_cols=148  Identities=20%  Similarity=0.149  Sum_probs=99.7

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhhcCC-------------------ccccccccceeEEEEEEcCeEEEEEEcCCCCC
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLKLGE-------------------IVTTIPTIGFNVETVEYKNVSFTVWDVGGQDK   72 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~-------------------~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~   72 (180)
                      ..+.+++|+++|+.++|||||+++|+...                   ......|++.....+..++..+.++|+||+.+
T Consensus        77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~  156 (478)
T PLN03126         77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD  156 (478)
T ss_pred             ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence            35678999999999999999999998521                   00111244444455666788999999999999


Q ss_pred             ChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCe-EEEEEecCCCCCCCC-Hh----HHHhHhCCCc
Q 030289           73 IRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV-LLVFANKQDLPNAMS-VS----EVTDKLGLHS  146 (180)
Q Consensus        73 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iiiv~nK~D~~~~~~-~~----~~~~~~~~~~  146 (180)
                      |.......+..+|++++|+|+.+... ....+++... ..   .++| +++++||+|+.+... .+    ++...+....
T Consensus       157 f~~~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~-~~---~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g  231 (478)
T PLN03126        157 YVKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLA-KQ---VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYE  231 (478)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHH-HH---cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcC
Confidence            87777778889999999999875422 2223333332 22   3566 788999999976322 12    2222222222


Q ss_pred             cCCcceEEEEeeccCCCC
Q 030289          147 LRQRRWYIQAACATSGQG  164 (180)
Q Consensus       147 ~~~~~~~~~~~Sa~~~~~  164 (180)
                      +....++++++|+.++.+
T Consensus       232 ~~~~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        232 FPGDDIPIISGSALLALE  249 (478)
T ss_pred             CCcCcceEEEEEcccccc
Confidence            233468999999998854

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.79  E-value=4.4e-18  Score=120.69  Aligned_cols=152  Identities=27%  Similarity=0.346  Sum_probs=107.1

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC--ccccc-cccceeEEEEEEcCe-EEEEEEcCCCCCC----h---hhHHhhcccc
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE--IVTTI-PTIGFNVETVEYKNV-SFTVWDVGGQDKI----R---PLWRHYFQNT   84 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~--~~~~~-~t~~~~~~~~~~~~~-~~~i~D~~G~~~~----~---~~~~~~~~~~   84 (180)
                      ...|.++|.|++|||||+|+++..+  ..+|. .|..+...++.+++. ++++-|.||--+-    +   .....-+.+|
T Consensus       196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~  275 (366)
T KOG1489|consen  196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERC  275 (366)
T ss_pred             ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhh
Confidence            3467899999999999999999766  22332 355566667777554 4999999993321    1   1233445689


Q ss_pred             CEEEEEEECCCh---hhHHHHHHHHHHHhcc-cccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEee
Q 030289           85 HGLIFVVDSNDR---ERIGEAKDELHRMLSE-DELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAAC  158 (180)
Q Consensus        85 ~~~i~v~d~~~~---~~~~~~~~~~~~~~~~-~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S  158 (180)
                      +.++||+|.+..   ..++.+...+.++-.+ ....+.|.++|+||+|+++.+.  ++++...+...       .++++|
T Consensus       276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~~-------~V~pvs  348 (366)
T KOG1489|consen  276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQNP-------HVVPVS  348 (366)
T ss_pred             ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcCCC-------cEEEee
Confidence            999999999887   6666666554444322 2457889999999999975322  14444443322       589999


Q ss_pred             ccCCCChHHHHHHHHH
Q 030289          159 ATSGQGLYEGLDWLSS  174 (180)
Q Consensus       159 a~~~~~i~~~~~~l~~  174 (180)
                      |+++++++++...+-+
T Consensus       349 A~~~egl~~ll~~lr~  364 (366)
T KOG1489|consen  349 AKSGEGLEELLNGLRE  364 (366)
T ss_pred             eccccchHHHHHHHhh
Confidence            9999999999987754

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.78  E-value=1.8e-18  Score=122.16  Aligned_cols=160  Identities=18%  Similarity=0.216  Sum_probs=104.0

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCCcccc---ccccc-eeEEEEEEcCeEEEEEEcCCCCC------------Chhh
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG-FNVETVEYKNVSFTVWDVGGQDK------------IRPL   76 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~---~~t~~-~~~~~~~~~~~~~~i~D~~G~~~------------~~~~   76 (180)
                      ..+..+|+++|.||+|||||.|.+.+.+....   ..|+. -....+..+..++.++||||--.            +...
T Consensus        69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~  148 (379)
T KOG1423|consen   69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQN  148 (379)
T ss_pred             cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence            36788999999999999999999999882222   22333 33344555889999999999211            0112


Q ss_pred             HHhhccccCEEEEEEECCChhhH--HHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC-------------Hh----H
Q 030289           77 WRHYFQNTHGLIFVVDSNDRERI--GEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS-------------VS----E  137 (180)
Q Consensus        77 ~~~~~~~~~~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~-------------~~----~  137 (180)
                      ....+.++|++++++|+++....  ......+..+      ..+|-++|.||.|......             +.    +
T Consensus       149 ~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y------s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~  222 (379)
T KOG1423|consen  149 PRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY------SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLE  222 (379)
T ss_pred             HHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH------hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhh
Confidence            44566789999999999863221  1222222322      5678899999999754211             11    1


Q ss_pred             HHhHhCCCc----c-CCcce----EEEEeeccCCCChHHHHHHHHHHhhh
Q 030289          138 VTDKLGLHS----L-RQRRW----YIQAACATSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       138 ~~~~~~~~~----~-~~~~~----~~~~~Sa~~~~~i~~~~~~l~~~~~~  178 (180)
                      +.+++....    + ...++    .+|.+||.+|.||+++.+++..++..
T Consensus       223 v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~  272 (379)
T KOG1423|consen  223 VQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP  272 (379)
T ss_pred             HHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC
Confidence            111111111    1 01122    48999999999999999999987654

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.78  E-value=1.4e-18  Score=133.59  Aligned_cols=152  Identities=16%  Similarity=0.127  Sum_probs=98.9

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCC--ccc----------------------------------cccccceeEEEEE
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGE--IVT----------------------------------TIPTIGFNVETVE   56 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~--~~~----------------------------------~~~t~~~~~~~~~   56 (180)
                      .+..+||+++|+.++|||||+++|+...  ...                                  ...|++..+..+.
T Consensus        24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~  103 (474)
T PRK05124         24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS  103 (474)
T ss_pred             ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence            4678999999999999999999997542  110                                  0113444455566


Q ss_pred             EcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--
Q 030289           57 YKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--  134 (180)
Q Consensus        57 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--  134 (180)
                      .++.++.+|||||++.|.......+..+|++++|+|+...-.  ........+....  ...++++++||+|+.+...  
T Consensus       104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~--~qt~~~~~l~~~l--g~~~iIvvvNKiD~~~~~~~~  179 (474)
T PRK05124        104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVL--DQTRRHSFIATLL--GIKHLVVAVNKMDLVDYSEEV  179 (474)
T ss_pred             cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcc--ccchHHHHHHHHh--CCCceEEEEEeeccccchhHH
Confidence            678899999999999886666666789999999999975321  1111111122211  1247899999999874221  


Q ss_pred             HhHHHhHhCC--CccC-CcceEEEEeeccCCCChHHH
Q 030289          135 VSEVTDKLGL--HSLR-QRRWYIQAACATSGQGLYEG  168 (180)
Q Consensus       135 ~~~~~~~~~~--~~~~-~~~~~~~~~Sa~~~~~i~~~  168 (180)
                      .+++.+.+..  .... ....+++++||++|+|+++.
T Consensus       180 ~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        180 FERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             HHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            2233322211  0000 22468999999999999864

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.78  E-value=3.2e-18  Score=130.73  Aligned_cols=151  Identities=19%  Similarity=0.160  Sum_probs=102.5

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCC--c--------------------------------cccccccceeEEEEEEc
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGE--I--------------------------------VTTIPTIGFNVETVEYK   58 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~--~--------------------------------~~~~~t~~~~~~~~~~~   58 (180)
                      ..++++|+++|+.++|||||+.+|+...  .                                .+...|++.....+...
T Consensus         4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~   83 (446)
T PTZ00141          4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP   83 (446)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence            5678999999999999999999997511  0                                01112455555666668


Q ss_pred             CeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChh---hH---HHHHHHHHHHhcccccCCCe-EEEEEecCCCCC
Q 030289           59 NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRE---RI---GEAKDELHRMLSEDELREAV-LLVFANKQDLPN  131 (180)
Q Consensus        59 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~~-iiiv~nK~D~~~  131 (180)
                      +..+.++|+||+.+|.......+..+|++++|+|+....   .+   ......+.. +..   .++| +++++||+|...
T Consensus        84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~-~~~---~gi~~iiv~vNKmD~~~  159 (446)
T PTZ00141         84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALL-AFT---LGVKQMIVCINKMDDKT  159 (446)
T ss_pred             CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHH-HHH---cCCCeEEEEEEcccccc
Confidence            889999999999999888888889999999999997532   11   122222222 222   2444 789999999532


Q ss_pred             ----CCCHhH----HHhHhCCCccCCcceEEEEeeccCCCChHH
Q 030289          132 ----AMSVSE----VTDKLGLHSLRQRRWYIQAACATSGQGLYE  167 (180)
Q Consensus       132 ----~~~~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  167 (180)
                          +...++    +...+....+....++++++|+.+|+|+.+
T Consensus       160 ~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        160 VNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             chhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence                122223    333333333333468999999999999864

>PRK00049 elongation factor Tu; Reviewed

Probab=99.78  E-value=4.7e-18  Score=128.42  Aligned_cols=158  Identities=18%  Similarity=0.136  Sum_probs=104.0

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCc-------c------------ccccccceeEEEEEEcCeEEEEEEcCCCCCCh
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEI-------V------------TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIR   74 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~-------~------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~   74 (180)
                      +.+++|+++|+.++|||||+++|++...       .            +...|++.....+..++.++.++||||+.+|.
T Consensus        10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~   89 (396)
T PRK00049         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV   89 (396)
T ss_pred             CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence            6789999999999999999999986210       0            11224444444455577889999999998887


Q ss_pred             hhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEE-EEEecCCCCCCCC-Hh----HHHhHhCCCccC
Q 030289           75 PLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLL-VFANKQDLPNAMS-VS----EVTDKLGLHSLR  148 (180)
Q Consensus        75 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii-iv~nK~D~~~~~~-~~----~~~~~~~~~~~~  148 (180)
                      ......+..+|++++|+|+...-. ......+... ..   .++|.+ +++||+|+.+... .+    ++...+....+.
T Consensus        90 ~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~-~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~  164 (396)
T PRK00049         90 KNMITGAAQMDGAILVVSAADGPM-PQTREHILLA-RQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP  164 (396)
T ss_pred             HHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHH-HH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCC
Confidence            777777889999999999975321 2222233222 22   356765 6899999975322 11    222222222222


Q ss_pred             CcceEEEEeeccCCC----------ChHHHHHHHHHHh
Q 030289          149 QRRWYIQAACATSGQ----------GLYEGLDWLSSNV  176 (180)
Q Consensus       149 ~~~~~~~~~Sa~~~~----------~i~~~~~~l~~~~  176 (180)
                      ...++++++|++++.          ++.++++.|.+.+
T Consensus       165 ~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~  202 (396)
T PRK00049        165 GDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI  202 (396)
T ss_pred             ccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence            345789999999875          4567777776543

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.78  E-value=5.5e-19  Score=133.77  Aligned_cols=159  Identities=16%  Similarity=0.187  Sum_probs=119.6

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeE---EEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEE
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV---ETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF   89 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~---~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   89 (180)
                      .++.+||+++|+.|+||||||-.|...++++..|..-..+   ..+.-+.+...++|++..+.-+.....-++++|++.+
T Consensus         6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l   85 (625)
T KOG1707|consen    6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL   85 (625)
T ss_pred             CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence            3678999999999999999999999888666655332111   2333366679999999887777777788899999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhcccc--cCCCeEEEEEecCCCCCCCCH--hH----HHhHhCCCccCCcceEEEEeeccC
Q 030289           90 VVDSNDRERIGEAKDELHRMLSEDE--LREAVLLVFANKQDLPNAMSV--SE----VTDKLGLHSLRQRRWYIQAACATS  161 (180)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~iiiv~nK~D~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~Sa~~  161 (180)
                      +|+++++++++.+...|..+++...  ...+|+|+|+||+|.......  +.    ++.++...      -.+++|||++
T Consensus        86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~Ei------EtciecSA~~  159 (625)
T KOG1707|consen   86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEI------ETCIECSALT  159 (625)
T ss_pred             EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHH------HHHHhhhhhh
Confidence            9999999999999865555555432  257899999999998764332  22    22222211      1479999999


Q ss_pred             CCChHHHHHHHHHHhh
Q 030289          162 GQGLYEGLDWLSSNVS  177 (180)
Q Consensus       162 ~~~i~~~~~~l~~~~~  177 (180)
                      -.++.++|.+..+++.
T Consensus       160 ~~n~~e~fYyaqKaVi  175 (625)
T KOG1707|consen  160 LANVSELFYYAQKAVI  175 (625)
T ss_pred             hhhhHhhhhhhhheee
Confidence            9999999998877653

>PLN03127 Elongation factor Tu; Provisional

Probab=99.77  E-value=1.3e-17  Score=127.23  Aligned_cols=161  Identities=17%  Similarity=0.128  Sum_probs=104.5

Q ss_pred             hcccCccEEEEEcCCCCChHHHHHHhhcC------C--c---------c--ccccccceeEEEEEEcCeEEEEEEcCCCC
Q 030289           11 LFARKEMRILMVGLDAAGKTTILYKLKLG------E--I---------V--TTIPTIGFNVETVEYKNVSFTVWDVGGQD   71 (180)
Q Consensus        11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~------~--~---------~--~~~~t~~~~~~~~~~~~~~~~i~D~~G~~   71 (180)
                      .-...+++|+++|+.++|||||+++|.+.      .  .         .  +...|++.....+..++.++.++||||+.
T Consensus        56 ~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~  135 (447)
T PLN03127         56 TRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHA  135 (447)
T ss_pred             hcCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCcc
Confidence            33577899999999999999999999622      1  0         0  11235555555666677899999999999


Q ss_pred             CChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCe-EEEEEecCCCCCCCCH-hHHH----hHhCCC
Q 030289           72 KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV-LLVFANKQDLPNAMSV-SEVT----DKLGLH  145 (180)
Q Consensus        72 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iiiv~nK~D~~~~~~~-~~~~----~~~~~~  145 (180)
                      .|..........+|++++|+|+.+.-  ......+..++..   .++| +++++||+|+.+.... +.+.    +.+...
T Consensus       136 ~f~~~~~~g~~~aD~allVVda~~g~--~~qt~e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~  210 (447)
T PLN03127        136 DYVKNMITGAAQMDGGILVVSAPDGP--MPQTKEHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFY  210 (447)
T ss_pred             chHHHHHHHHhhCCEEEEEEECCCCC--chhHHHHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHh
Confidence            88776666777899999999987542  1222222222222   3577 5788999999753221 1121    111111


Q ss_pred             ccCCcceEEEEeecc---CCCC-------hHHHHHHHHHHh
Q 030289          146 SLRQRRWYIQAACAT---SGQG-------LYEGLDWLSSNV  176 (180)
Q Consensus       146 ~~~~~~~~~~~~Sa~---~~~~-------i~~~~~~l~~~~  176 (180)
                      .+....++++++|+.   ++.|       +.++++.+.+.+
T Consensus       211 ~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l  251 (447)
T PLN03127        211 KFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI  251 (447)
T ss_pred             CCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence            122235788888876   4555       677787777654

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.77  E-value=1.5e-17  Score=118.62  Aligned_cols=155  Identities=18%  Similarity=0.174  Sum_probs=112.5

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCC--cccc-ccccceeEEEEEEcCeEEEEEEcCCCCC------C--hhhHHhhcc-
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGE--IVTT-IPTIGFNVETVEYKNVSFTVWDVGGQDK------I--RPLWRHYFQ-   82 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~--~~~~-~~t~~~~~~~~~~~~~~~~i~D~~G~~~------~--~~~~~~~~~-   82 (180)
                      .-+.|+|.|.||||||||++.+++.+  ..+| ..|.++....+..+...++++||||--.      .  ......+++ 
T Consensus       167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~h  246 (346)
T COG1084         167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRH  246 (346)
T ss_pred             CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHH
Confidence            57899999999999999999999877  3333 2377799999999999999999999221      1  111222222 


Q ss_pred             ccCEEEEEEECCC--hhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeecc
Q 030289           83 NTHGLIFVVDSND--RERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACAT  160 (180)
Q Consensus        83 ~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  160 (180)
                      -.++++|+||.+.  ..+++.....+..+...   .+.|+++|+||.|..+....+++........    +.....+++.
T Consensus       247 l~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~----~~~~~~~~~~  319 (346)
T COG1084         247 LAGVILFLFDPSETCGYSLEEQISLLEEIKEL---FKAPIVVVINKIDIADEEKLEEIEASVLEEG----GEEPLKISAT  319 (346)
T ss_pred             hcCeEEEEEcCccccCCCHHHHHHHHHHHHHh---cCCCeEEEEecccccchhHHHHHHHHHHhhc----cccccceeee
Confidence            3688999999975  46788888888888655   3489999999999987666655554422221    1124677777


Q ss_pred             CCCChHHHHHHHHHHh
Q 030289          161 SGQGLYEGLDWLSSNV  176 (180)
Q Consensus       161 ~~~~i~~~~~~l~~~~  176 (180)
                      .+.+++.+-..+....
T Consensus       320 ~~~~~d~~~~~v~~~a  335 (346)
T COG1084         320 KGCGLDKLREEVRKTA  335 (346)
T ss_pred             ehhhHHHHHHHHHHHh
Confidence            8888887777776653

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.77  E-value=7.1e-18  Score=127.84  Aligned_cols=147  Identities=18%  Similarity=0.131  Sum_probs=95.4

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCC--ccc----------------------------------cccccceeEEEEEEcCe
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGE--IVT----------------------------------TIPTIGFNVETVEYKNV   60 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~--~~~----------------------------------~~~t~~~~~~~~~~~~~   60 (180)
                      +||+++|+.++|||||+++|+...  ...                                  ...|++..+..+..++.
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            589999999999999999996432  100                                  01134455556666788


Q ss_pred             EEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHH
Q 030289           61 SFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEV  138 (180)
Q Consensus        61 ~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~  138 (180)
                      ++.++||||++.|.......+..+|++++|+|+...-.  .....+..+....  ...++++++||+|+.+...  .+++
T Consensus        81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~--~qt~~~~~~~~~~--~~~~iivviNK~D~~~~~~~~~~~i  156 (406)
T TIGR02034        81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVL--EQTRRHSYIASLL--GIRHVVLAVNKMDLVDYDEEVFENI  156 (406)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc--cccHHHHHHHHHc--CCCcEEEEEEecccccchHHHHHHH
Confidence            99999999999887666777889999999999875321  1111111222221  2346899999999875221  1222


Q ss_pred             HhHhCC--CccCCcceEEEEeeccCCCChHH
Q 030289          139 TDKLGL--HSLRQRRWYIQAACATSGQGLYE  167 (180)
Q Consensus       139 ~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~  167 (180)
                      .+.+..  .......++++++||++|+|+++
T Consensus       157 ~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       157 KKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence            222110  00111246799999999999985

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.77  E-value=1e-20  Score=124.00  Aligned_cols=158  Identities=18%  Similarity=0.270  Sum_probs=125.2

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEE--EEEEc---CeEEEEEEcCCCCCChhhHHhhccccCEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE--TVEYK---NVSFTVWDVGGQDKIRPLWRHYFQNTHGL   87 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~--~~~~~---~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   87 (180)
                      ..-+|+.|+|.-|+|||+++.+...+. ...|.+|++..+.  ..+.+   -+++.+||+.|++++..+..-|++.+++.
T Consensus        23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~  102 (229)
T KOG4423|consen   23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGA  102 (229)
T ss_pred             hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcce
Confidence            456899999999999999999998777 5566778885543  33333   35678999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhccc---ccCCCeEEEEEecCCCCCCCC------HhHHHhHhCCCccCCcceEEEEee
Q 030289           88 IFVVDSNDRERIGEAKDELHRMLSED---ELREAVLLVFANKQDLPNAMS------VSEVTDKLGLHSLRQRRWYIQAAC  158 (180)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~iiiv~nK~D~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~S  158 (180)
                      .+|||+++.-+++....|..+..+..   ...-+|+++..||||......      .++..++.+.       ...+++|
T Consensus       103 ~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf-------~gwtets  175 (229)
T KOG4423|consen  103 FIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGF-------EGWTETS  175 (229)
T ss_pred             EEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCc-------cceeeec
Confidence            99999999999999999999887654   334478899999999754221      2223333222       2579999


Q ss_pred             ccCCCChHHHHHHHHHHhhh
Q 030289          159 ATSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       159 a~~~~~i~~~~~~l~~~~~~  178 (180)
                      ++.+.|++|+...+++.+..
T Consensus       176 ~Kenkni~Ea~r~lVe~~lv  195 (229)
T KOG4423|consen  176 AKENKNIPEAQRELVEKILV  195 (229)
T ss_pred             cccccChhHHHHHHHHHHHh
Confidence            99999999999999988754

>TIGR00503 prfC peptide chain release factor 3

Probab=99.76  E-value=6.7e-17  Score=125.52  Aligned_cols=113  Identities=20%  Similarity=0.238  Sum_probs=81.1

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC--cccc-----------------------ccccceeEEEEEEcCeEEEEEEcC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE--IVTT-----------------------IPTIGFNVETVEYKNVSFTVWDVG   68 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~--~~~~-----------------------~~t~~~~~~~~~~~~~~~~i~D~~   68 (180)
                      .+..+|+|+|++++|||||+++|+...  ....                       ..++......+...+..+.+||||
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP   88 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP   88 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence            567899999999999999999986321  1000                       012223345566789999999999


Q ss_pred             CCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289           69 GQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN  131 (180)
Q Consensus        69 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~  131 (180)
                      |+..+......+++.+|++++|+|+.+.-. .....++. ....   .++|+++++||+|+..
T Consensus        89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~-~~~~---~~~PiivviNKiD~~~  146 (527)
T TIGR00503        89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLME-VTRL---RDTPIFTFMNKLDRDI  146 (527)
T ss_pred             ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHH-HHHh---cCCCEEEEEECccccC
Confidence            998888777778899999999999976311 12233333 3222   4689999999999854

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.76  E-value=7.9e-17  Score=129.46  Aligned_cols=114  Identities=19%  Similarity=0.118  Sum_probs=85.1

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCC--c------c-------------ccccccceeEEEEEEcCeEEEEEEcCCCC
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGE--I------V-------------TTIPTIGFNVETVEYKNVSFTVWDVGGQD   71 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~--~------~-------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~   71 (180)
                      .++.-||+|+|++++|||||+++|+...  .      .             ....|+......+...+.++.+|||||+.
T Consensus         7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~   86 (689)
T TIGR00484         7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHV   86 (689)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCc
Confidence            3556799999999999999999997422  1      0             01224455667777789999999999999


Q ss_pred             CChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289           72 KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN  131 (180)
Q Consensus        72 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~  131 (180)
                      .+......+++.+|++++|+|+.+....+.. ..+... .   ..++|+++++||+|+..
T Consensus        87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~-~---~~~~p~ivviNK~D~~~  141 (689)
T TIGR00484        87 DFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQA-N---RYEVPRIAFVNKMDKTG  141 (689)
T ss_pred             chhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHH-H---HcCCCEEEEEECCCCCC
Confidence            8888888999999999999999865333322 222222 2   23688999999999875

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.76  E-value=1e-16  Score=101.49  Aligned_cols=103  Identities=21%  Similarity=0.330  Sum_probs=71.2

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCCc--cc--cccccceeEEEEEEcCeEEEEEEcCCCCCCh---------hhHHhhcccc
Q 030289           18 RILMVGLDAAGKTTILYKLKLGEI--VT--TIPTIGFNVETVEYKNVSFTVWDVGGQDKIR---------PLWRHYFQNT   84 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~~--~~--~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~~~~   84 (180)
                      +|+|+|.+|+|||||+|+|++...  ..  ...|....+..+...+..+.++||||-..-.         ......+..+
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~   80 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS   80 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence            689999999999999999998541  21  2235556566677789999999999954321         1122333789


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEec
Q 030289           85 HGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANK  126 (180)
Q Consensus        85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK  126 (180)
                      |++++|+|.+++.. +...+.+..+    . .+.|+++|+||
T Consensus        81 d~ii~vv~~~~~~~-~~~~~~~~~l----~-~~~~~i~v~NK  116 (116)
T PF01926_consen   81 DLIIYVVDASNPIT-EDDKNILREL----K-NKKPIILVLNK  116 (116)
T ss_dssp             SEEEEEEETTSHSH-HHHHHHHHHH----H-TTSEEEEEEES
T ss_pred             CEEEEEEECCCCCC-HHHHHHHHHH----h-cCCCEEEEEcC
Confidence            99999999876311 2222333333    1 57899999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.75  E-value=6.7e-18  Score=123.77  Aligned_cols=153  Identities=19%  Similarity=0.209  Sum_probs=107.4

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCC----------------------------------ccccccccceeEEEEEEc
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGE----------------------------------IVTTIPTIGFNVETVEYK   58 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~----------------------------------~~~~~~t~~~~~~~~~~~   58 (180)
                      ...+.+++|+|+..+|||||+-+|+..-                                  -++..-|++.....+..+
T Consensus         4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~   83 (428)
T COG5256           4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD   83 (428)
T ss_pred             CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence            4678999999999999999999987421                                  111223666777778888


Q ss_pred             CeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChh---h--HHHHHHHHHHHhcccccCCCeEEEEEecCCCCC--
Q 030289           59 NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRE---R--IGEAKDELHRMLSEDELREAVLLVFANKQDLPN--  131 (180)
Q Consensus        59 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~--~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~--  131 (180)
                      ++.+.|+|+||+..|-........++|++++|+|+.+.+   .  .+.+...+.-+.+..  .-..++++.||+|..+  
T Consensus        84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl--Gi~~lIVavNKMD~v~wd  161 (428)
T COG5256          84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL--GIKQLIVAVNKMDLVSWD  161 (428)
T ss_pred             CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc--CCceEEEEEEcccccccC
Confidence            999999999999888888888889999999999998653   1  233333333333322  2345899999999876  


Q ss_pred             CCCHhHHHhHhC----CCccCCcceEEEEeeccCCCChHH
Q 030289          132 AMSVSEVTDKLG----LHSLRQRRWYIQAACATSGQGLYE  167 (180)
Q Consensus       132 ~~~~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~i~~  167 (180)
                      +...+++..+..    ...+...+++|+++|+..|+|+.+
T Consensus       162 e~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~  201 (428)
T COG5256         162 EERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK  201 (428)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence            222333333222    222333467899999999999864

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.75  E-value=1.6e-17  Score=132.35  Aligned_cols=154  Identities=16%  Similarity=0.115  Sum_probs=98.3

Q ss_pred             hhcccCccEEEEEcCCCCChHHHHHHhhcCC--ccc----------------------------------cccccceeEE
Q 030289           10 MLFARKEMRILMVGLDAAGKTTILYKLKLGE--IVT----------------------------------TIPTIGFNVE   53 (180)
Q Consensus        10 ~~~~~~~~~i~i~G~~~~GKStli~~l~~~~--~~~----------------------------------~~~t~~~~~~   53 (180)
                      +...+..++|+++|++++|||||+++|+...  ...                                  ...|++..+.
T Consensus        18 ~~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~   97 (632)
T PRK05506         18 QHERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYR   97 (632)
T ss_pred             hccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeee
Confidence            3445678999999999999999999998643  110                                  0113334445


Q ss_pred             EEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC-
Q 030289           54 TVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA-  132 (180)
Q Consensus        54 ~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~-  132 (180)
                      .+...+.++.++||||++.|.......+..+|++++|+|+...-. ......+. ++...  ...++++++||+|+.+. 
T Consensus        98 ~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~-~~t~e~~~-~~~~~--~~~~iivvvNK~D~~~~~  173 (632)
T PRK05506         98 YFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVL-TQTRRHSF-IASLL--GIRHVVLAVNKMDLVDYD  173 (632)
T ss_pred             EEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcc-ccCHHHHH-HHHHh--CCCeEEEEEEecccccch
Confidence            556677899999999998876666667889999999999975321 11111111 11111  23578999999998742 


Q ss_pred             -CCHhHHHhHhCC--CccCCcceEEEEeeccCCCChHH
Q 030289          133 -MSVSEVTDKLGL--HSLRQRRWYIQAACATSGQGLYE  167 (180)
Q Consensus       133 -~~~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~  167 (180)
                       ...+++..++..  ....-...+++++||++|.|+++
T Consensus       174 ~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        174 QEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             hHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence             112222222210  00011235799999999999874

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.74  E-value=4.2e-17  Score=113.84  Aligned_cols=108  Identities=18%  Similarity=0.159  Sum_probs=77.4

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCC--ccc-----------------cccccceeEEEEEEc----------CeEEEEEEcC
Q 030289           18 RILMVGLDAAGKTTILYKLKLGE--IVT-----------------TIPTIGFNVETVEYK----------NVSFTVWDVG   68 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~--~~~-----------------~~~t~~~~~~~~~~~----------~~~~~i~D~~   68 (180)
                      +|+++|+.++|||||+.+|+...  ...                 ...|+......+.+.          +..+.+||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            79999999999999999997432  100                 011332222223332          7889999999


Q ss_pred             CCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCC
Q 030289           69 GQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP  130 (180)
Q Consensus        69 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~  130 (180)
                      |+..|......+++.+|++++|+|+.+....+. ...+.....    .++|+++|+||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~----~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK----ERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCcc
Confidence            999999999999999999999999987544332 223333322    357899999999975

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd00066 G-alpha G protein alpha subunit

Probab=99.73  E-value=9.9e-17  Score=117.88  Aligned_cols=135  Identities=24%  Similarity=0.405  Sum_probs=105.4

Q ss_pred             ccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCCh----------hhHHHHHHHHHHHhcccc
Q 030289           45 IPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDR----------ERIGEAKDELHRMLSEDE  114 (180)
Q Consensus        45 ~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~  114 (180)
                      .||+|+....+..++..+.+||++|+...+..|..++.+++++++|+|+++.          ..+.+....+..++....
T Consensus       146 ~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~  225 (317)
T cd00066         146 VKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRW  225 (317)
T ss_pred             cccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcc
Confidence            3577788888888999999999999999999999999999999999999864          567777888888888877


Q ss_pred             cCCCeEEEEEecCCCCCC------------------CCHhHHHhHh-----CCCccCCcceEEEEeeccCCCChHHHHHH
Q 030289          115 LREAVLLVFANKQDLPNA------------------MSVSEVTDKL-----GLHSLRQRRWYIQAACATSGQGLYEGLDW  171 (180)
Q Consensus       115 ~~~~~iiiv~nK~D~~~~------------------~~~~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  171 (180)
                      ..+.|+++++||.|+..+                  .+.+.....+     .......+.+..+.++|.+-.+++.+|+.
T Consensus       226 ~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~  305 (317)
T cd00066         226 FANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDA  305 (317)
T ss_pred             ccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHH
Confidence            788999999999996431                  1122211111     11111245678899999999999999999


Q ss_pred             HHHHhhhc
Q 030289          172 LSSNVSAK  179 (180)
Q Consensus       172 l~~~~~~~  179 (180)
                      +.+.+..+
T Consensus       306 v~~~i~~~  313 (317)
T cd00066         306 VKDIILQN  313 (317)
T ss_pred             HHHHHHHH
Confidence            98887653

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.73  E-value=1.8e-16  Score=109.35  Aligned_cols=160  Identities=18%  Similarity=0.110  Sum_probs=100.1

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCC-cccc----ccccceeEEEEEEcCeEEEEEEcCCCCCCh-------hh----HHhh
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGE-IVTT----IPTIGFNVETVEYKNVSFTVWDVGGQDKIR-------PL----WRHY   80 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~-~~~~----~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~----~~~~   80 (180)
                      .+|+++|.+|+|||||+|++++.. ....    ..|..+........+..+.++||||-....       ..    ....
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~   80 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS   80 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence            479999999999999999999876 2221    235556666666788999999999944321       11    1222


Q ss_pred             ccccCEEEEEEECCCh-hhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCC---CccCCcceEEEE
Q 030289           81 FQNTHGLIFVVDSNDR-ERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGL---HSLRQRRWYIQA  156 (180)
Q Consensus        81 ~~~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  156 (180)
                      ..+.|++++|+++.+. .......+++......  ..-.++++++|++|...+...++.......   ......+-.++.
T Consensus        81 ~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~--~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~  158 (196)
T cd01852          81 APGPHAFLLVVPLGRFTEEEEQAVETLQELFGE--KVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA  158 (196)
T ss_pred             CCCCEEEEEEEECCCcCHHHHHHHHHHHHHhCh--HhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence            3568999999998752 1122333444444322  112468999999998765554443322110   001122223333


Q ss_pred             ee-----ccCCCChHHHHHHHHHHhhh
Q 030289          157 AC-----ATSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       157 ~S-----a~~~~~i~~~~~~l~~~~~~  178 (180)
                      .+     +..+.+++++++.+.+.+.+
T Consensus       159 f~~~~~~~~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         159 FNNKAKGEEQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             EeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence            33     45677899999999988876

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.73  E-value=5.5e-17  Score=123.81  Aligned_cols=163  Identities=13%  Similarity=0.123  Sum_probs=105.8

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhhcCCcc------ccccccceeEEEE-----------------EE-----------
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLKLGEIV------TTIPTIGFNVETV-----------------EY-----------   57 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~------~~~~t~~~~~~~~-----------------~~-----------   57 (180)
                      ....+++|+++|+...|||||+.+|++....      ...-|+...+...                 ..           
T Consensus        30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (460)
T PTZ00327         30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC  109 (460)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence            4567899999999999999999999864411      1112333222211                 00           


Q ss_pred             -----cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC
Q 030289           58 -----KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA  132 (180)
Q Consensus        58 -----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~  132 (180)
                           ....+.++|+||++.|.......+..+|++++|+|+.+...-......+. ++...  .-.++++|+||+|+.+.
T Consensus       110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~~l--gi~~iIVvlNKiDlv~~  186 (460)
T PTZ00327        110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLA-AVEIM--KLKHIIILQNKIDLVKE  186 (460)
T ss_pred             cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH-HHHHc--CCCcEEEEEecccccCH
Confidence                 02478999999999887777777889999999999985321122222222 22221  23468999999999763


Q ss_pred             CCHhHHHhHhCCC--ccCCcceEEEEeeccCCCChHHHHHHHHHHhh
Q 030289          133 MSVSEVTDKLGLH--SLRQRRWYIQAACATSGQGLYEGLDWLSSNVS  177 (180)
Q Consensus       133 ~~~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  177 (180)
                      ...++..++....  .......+++++||++|.|++++++.|.+.+.
T Consensus       187 ~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp  233 (460)
T PTZ00327        187 AQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP  233 (460)
T ss_pred             HHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence            3322222221110  00123568999999999999999999987654

>smart00275 G_alpha G protein alpha subunit

Probab=99.73  E-value=1.3e-16  Score=118.05  Aligned_cols=134  Identities=24%  Similarity=0.399  Sum_probs=104.1

Q ss_pred             ccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCCh----------hhHHHHHHHHHHHhcccc
Q 030289           45 IPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDR----------ERIGEAKDELHRMLSEDE  114 (180)
Q Consensus        45 ~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~  114 (180)
                      .||+|+....+...+..+.+||++|+...+..|..++.++++++||+|+++.          ..+......+..+++...
T Consensus       169 ~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~  248 (342)
T smart00275      169 VPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRW  248 (342)
T ss_pred             CCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcc
Confidence            3477788888888999999999999999999999999999999999999863          467788888889888877


Q ss_pred             cCCCeEEEEEecCCCCCC-----------------CCHhHHHh----HhC-CCcc-CCcceEEEEeeccCCCChHHHHHH
Q 030289          115 LREAVLLVFANKQDLPNA-----------------MSVSEVTD----KLG-LHSL-RQRRWYIQAACATSGQGLYEGLDW  171 (180)
Q Consensus       115 ~~~~~iiiv~nK~D~~~~-----------------~~~~~~~~----~~~-~~~~-~~~~~~~~~~Sa~~~~~i~~~~~~  171 (180)
                      ..+.|+++++||.|+..+                 .+.+....    .+. .... ..+.+..+.++|.+-.++..+|+.
T Consensus       249 ~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~  328 (342)
T smart00275      249 FANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDA  328 (342)
T ss_pred             ccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHH
Confidence            788999999999996531                 11112111    111 1111 235678899999999999999998


Q ss_pred             HHHHhhh
Q 030289          172 LSSNVSA  178 (180)
Q Consensus       172 l~~~~~~  178 (180)
                      +.+.+.+
T Consensus       329 v~~~I~~  335 (342)
T smart00275      329 VKDIILQ  335 (342)
T ss_pred             HHHHHHH
Confidence            8877764

Subunit of G proteins that contains the guanine nucleotide binding site

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.73  E-value=4.3e-16  Score=114.00  Aligned_cols=76  Identities=29%  Similarity=0.425  Sum_probs=53.1

Q ss_pred             EEEEcCCCCChHHHHHHhhcCCc-------cccccccceeEEEE-------------------E-EcCeEEEEEEcCCC-
Q 030289           19 ILMVGLDAAGKTTILYKLKLGEI-------VTTIPTIGFNVETV-------------------E-YKNVSFTVWDVGGQ-   70 (180)
Q Consensus        19 i~i~G~~~~GKStli~~l~~~~~-------~~~~~t~~~~~~~~-------------------~-~~~~~~~i~D~~G~-   70 (180)
                      |+++|.++||||||+|+|++...       .+..|+.+..+...                   . ...+.+++||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            57999999999999999998762       22233443332211                   0 13368999999997 


Q ss_pred             ---CCChhhHHh---hccccCEEEEEEECC
Q 030289           71 ---DKIRPLWRH---YFQNTHGLIFVVDSN   94 (180)
Q Consensus        71 ---~~~~~~~~~---~~~~~~~~i~v~d~~   94 (180)
                         +++..+...   .++++|++++|+|+.
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~  110 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS  110 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence               444444344   488999999999986

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.72  E-value=7.8e-17  Score=112.59  Aligned_cols=163  Identities=21%  Similarity=0.336  Sum_probs=111.5

Q ss_pred             hhcccCccEEEEEcCCCCChHHHHHHhhcCC--ccc-cccccc-eeEEEEEEcCeEEEEEEcCCCCC-------ChhhHH
Q 030289           10 MLFARKEMRILMVGLDAAGKTTILYKLKLGE--IVT-TIPTIG-FNVETVEYKNVSFTVWDVGGQDK-------IRPLWR   78 (180)
Q Consensus        10 ~~~~~~~~~i~i~G~~~~GKStli~~l~~~~--~~~-~~~t~~-~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~   78 (180)
                      +.....+.+|+++|..|+|||||||+|+.+.  ..+ ...+.+ ..+....++...+.+||+||-.+       ++....
T Consensus        33 ~l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~  112 (296)
T COG3596          33 QLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYR  112 (296)
T ss_pred             hhcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHH
Confidence            4556789999999999999999999999765  222 222333 23334444667899999999554       667788


Q ss_pred             hhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC----------C--HhHHHh----Hh
Q 030289           79 HYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM----------S--VSEVTD----KL  142 (180)
Q Consensus        79 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~----------~--~~~~~~----~~  142 (180)
                      .++...|.++++.+..|+. +..-..++.+++..  .-+.+++++.|.+|...+.          +  ..+...    .+
T Consensus       113 d~l~~~DLvL~l~~~~dra-L~~d~~f~~dVi~~--~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~  189 (296)
T COG3596         113 DYLPKLDLVLWLIKADDRA-LGTDEDFLRDVIIL--GLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEAL  189 (296)
T ss_pred             HHhhhccEEEEeccCCCcc-ccCCHHHHHHHHHh--ccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHH
Confidence            8889999999999998764 23334445555433  2347899999999965431          1  111111    11


Q ss_pred             CCCccCCcceEEEEeeccCCCChHHHHHHHHHHhh
Q 030289          143 GLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVS  177 (180)
Q Consensus       143 ~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  177 (180)
                      . ..+ +.-.|++.+|.+.+.|++++...+++.+.
T Consensus       190 ~-~~~-q~V~pV~~~~~r~~wgl~~l~~ali~~lp  222 (296)
T COG3596         190 G-RLF-QEVKPVVAVSGRLPWGLKELVRALITALP  222 (296)
T ss_pred             H-HHH-hhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence            1 011 11237889999999999999999998865

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.72  E-value=2.5e-16  Score=118.85  Aligned_cols=158  Identities=17%  Similarity=0.131  Sum_probs=114.9

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC------------------ccccccccceeEEEEEEcC---eEEEEEEcCCCCC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE------------------IVTTIPTIGFNVETVEYKN---VSFTVWDVGGQDK   72 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~------------------~~~~~~t~~~~~~~~~~~~---~~~~i~D~~G~~~   72 (180)
                      ++--|+.|+-+...|||||..+|+...                  ..+...|+......+.+.+   +.+.++|||||..
T Consensus        58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD  137 (650)
T KOG0462|consen   58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD  137 (650)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence            667789999999999999999996321                  0112234444444555554   8999999999999


Q ss_pred             ChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcce
Q 030289           73 IRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRW  152 (180)
Q Consensus        73 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  152 (180)
                      |..-..+.+.-|+++++|+|+...---+....++..+     ..+..+|.|+||+|++.+ +++++...+... +.....
T Consensus       138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAf-----e~~L~iIpVlNKIDlp~a-dpe~V~~q~~~l-F~~~~~  210 (650)
T KOG0462|consen  138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAF-----EAGLAIIPVLNKIDLPSA-DPERVENQLFEL-FDIPPA  210 (650)
T ss_pred             ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHH-----HcCCeEEEeeeccCCCCC-CHHHHHHHHHHH-hcCCcc
Confidence            9988888889999999999998654444555555554     246779999999999874 344433322211 112233


Q ss_pred             EEEEeeccCCCChHHHHHHHHHHhhh
Q 030289          153 YIQAACATSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       153 ~~~~~Sa~~~~~i~~~~~~l~~~~~~  178 (180)
                      +++.+||++|.|++++++++++.+..
T Consensus       211 ~~i~vSAK~G~~v~~lL~AII~rVPp  236 (650)
T KOG0462|consen  211 EVIYVSAKTGLNVEELLEAIIRRVPP  236 (650)
T ss_pred             ceEEEEeccCccHHHHHHHHHhhCCC
Confidence            79999999999999999999998753

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.71  E-value=2.8e-16  Score=118.73  Aligned_cols=157  Identities=19%  Similarity=0.185  Sum_probs=112.1

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCcccccc---ccceeEEEEEEc---CeEEEEEEcCCCCCChhhHHhhccccCEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP---TIGFNVETVEYK---NVSFTVWDVGGQDKIRPLWRHYFQNTHGL   87 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~---t~~~~~~~~~~~---~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   87 (180)
                      .+.+=|+++|+...|||||+-.+-........+   |.-+.-..+...   .-.+.++|||||+-|..++.+-..-+|++
T Consensus         3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa   82 (509)
T COG0532           3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA   82 (509)
T ss_pred             CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence            356779999999999999999987766333222   444444444443   45899999999999999999888899999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCcc----CCcceEEEEeeccCCC
Q 030289           88 IFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSL----RQRRWYIQAACATSGQ  163 (180)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~  163 (180)
                      ++|+++++.---+... -+    ++....+.|+++..||+|+++ ..++.+..++....+    ......++++||++|+
T Consensus        83 ILVVa~dDGv~pQTiE-AI----~hak~a~vP~iVAiNKiDk~~-~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~  156 (509)
T COG0532          83 ILVVAADDGVMPQTIE-AI----NHAKAAGVPIVVAINKIDKPE-ANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGE  156 (509)
T ss_pred             EEEEEccCCcchhHHH-HH----HHHHHCCCCEEEEEecccCCC-CCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCC
Confidence            9999998642211111 11    222246899999999999985 344444444332222    2334789999999999


Q ss_pred             ChHHHHHHHHHHh
Q 030289          164 GLYEGLDWLSSNV  176 (180)
Q Consensus       164 ~i~~~~~~l~~~~  176 (180)
                      |+++++..+.-..
T Consensus       157 Gi~eLL~~ill~a  169 (509)
T COG0532         157 GIDELLELILLLA  169 (509)
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999887543

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.71  E-value=5.7e-16  Score=115.72  Aligned_cols=164  Identities=20%  Similarity=0.180  Sum_probs=108.4

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC--cccccc--ccceeEEEEEEcCeEEEEEEcCCCCC-C--------hhhHHhh
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIP--TIGFNVETVEYKNVSFTVWDVGGQDK-I--------RPLWRHY   80 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~--~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~-~--------~~~~~~~   80 (180)
                      +...+|+|+|+||+|||||+|.|...+  .+...|  |.+.-...++..++++.+.||+|-.+ -        -......
T Consensus       266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~  345 (531)
T KOG1191|consen  266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR  345 (531)
T ss_pred             hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence            567999999999999999999999887  444444  66677778889999999999999443 1        1124455


Q ss_pred             ccccCEEEEEEECC--ChhhHHHHHHHHHHHhcc-----cccCCCeEEEEEecCCCCCCCCHhH--HHhHhCCCccCCcc
Q 030289           81 FQNTHGLIFVVDSN--DRERIGEAKDELHRMLSE-----DELREAVLLVFANKQDLPNAMSVSE--VTDKLGLHSLRQRR  151 (180)
Q Consensus        81 ~~~~~~~i~v~d~~--~~~~~~~~~~~~~~~~~~-----~~~~~~~iiiv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~  151 (180)
                      +.++|++++|+|+.  +-++-..+...+...-..     ....+.+++++.||+|+..+.....  ....... ......
T Consensus       346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~-~~~~~~  424 (531)
T KOG1191|consen  346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA-EGRSVF  424 (531)
T ss_pred             HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc-ccCccc
Confidence            67899999999993  222212222222222111     1224678999999999987521111  1111111 111111


Q ss_pred             eEEEEeeccCCCChHHHHHHHHHHhhh
Q 030289          152 WYIQAACATSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       152 ~~~~~~Sa~~~~~i~~~~~~l~~~~~~  178 (180)
                      -...++|+.++++++.+...+.+.+..
T Consensus       425 ~i~~~vs~~tkeg~~~L~~all~~~~~  451 (531)
T KOG1191|consen  425 PIVVEVSCTTKEGCERLSTALLNIVER  451 (531)
T ss_pred             ceEEEeeechhhhHHHHHHHHHHHHHH
Confidence            234569999999999999999887654

>PRK12739 elongation factor G; Reviewed

Probab=99.70  E-value=7.3e-16  Score=123.91  Aligned_cols=114  Identities=19%  Similarity=0.106  Sum_probs=85.1

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCC-----c----------------cccccccceeEEEEEEcCeEEEEEEcCCCC
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGE-----I----------------VTTIPTIGFNVETVEYKNVSFTVWDVGGQD   71 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~-----~----------------~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~   71 (180)
                      .++..||+|+|+.++|||||+++|+...     .                .....|+.....++..++.++.++||||+.
T Consensus         5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~   84 (691)
T PRK12739          5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV   84 (691)
T ss_pred             ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence            3556789999999999999999997421     0                012236666677788899999999999998


Q ss_pred             CChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289           72 KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN  131 (180)
Q Consensus        72 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~  131 (180)
                      .+...+...++.+|++++|+|+.+.-.-+. ...+... .   ..++|.++++||+|+..
T Consensus        85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~-~---~~~~p~iv~iNK~D~~~  139 (691)
T PRK12739         85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQA-D---KYGVPRIVFVNKMDRIG  139 (691)
T ss_pred             HHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHH-H---HcCCCEEEEEECCCCCC
Confidence            887788889999999999999976432211 2222222 2   24678999999999875

>cd01850 CDC_Septin CDC/Septin

Probab=99.70  E-value=1e-16  Score=115.54  Aligned_cols=113  Identities=15%  Similarity=0.224  Sum_probs=70.6

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCCccc-----------cccccceeEEEE--EEcC--eEEEEEEcCCCCCChh---h
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGEIVT-----------TIPTIGFNVETV--EYKN--VSFTVWDVGGQDKIRP---L   76 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~-----------~~~t~~~~~~~~--~~~~--~~~~i~D~~G~~~~~~---~   76 (180)
                      -.|+|+++|++|+|||||+|+|++.....           ..+|+.......  ..++  .++.+|||||-.....   .
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~   82 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC   82 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence            36899999999999999999999877322           223444433332  2233  6799999999332100   0


Q ss_pred             -----------------------HHhhcc--ccCEEEEEEECCChhhHHHH-HHHHHHHhcccccCCCeEEEEEecCCCC
Q 030289           77 -----------------------WRHYFQ--NTHGLIFVVDSNDRERIGEA-KDELHRMLSEDELREAVLLVFANKQDLP  130 (180)
Q Consensus        77 -----------------------~~~~~~--~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiiv~nK~D~~  130 (180)
                                             +...+.  ++|+++|+++.+. ..+... ...+..+.     ..+|+++|+||+|+.
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~-~~l~~~D~~~lk~l~-----~~v~vi~VinK~D~l  156 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTG-HGLKPLDIEFMKRLS-----KRVNIIPVIAKADTL  156 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCC-CCCCHHHHHHHHHHh-----ccCCEEEEEECCCcC
Confidence                                   101222  4688888888764 222222 23333332     258899999999997


Q ss_pred             CCC
Q 030289          131 NAM  133 (180)
Q Consensus       131 ~~~  133 (180)
                      +..
T Consensus       157 ~~~  159 (276)
T cd01850         157 TPE  159 (276)
T ss_pred             CHH
Confidence            643

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.68  E-value=2e-15  Score=107.70  Aligned_cols=152  Identities=22%  Similarity=0.218  Sum_probs=106.0

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC--ccccc-cccceeEEEEEEcCeEEEEEEcCCCCCC-------hhhHHhhccccC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE--IVTTI-PTIGFNVETVEYKNVSFTVWDVGGQDKI-------RPLWRHYFQNTH   85 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~--~~~~~-~t~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~~~   85 (180)
                      --.++++|.|.+|||||+++|++.+  ..+|. .|..+....+.+++.++++.|+||--.-       ........++||
T Consensus        63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~AD  142 (365)
T COG1163          63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNAD  142 (365)
T ss_pred             CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCC
Confidence            3578999999999999999999877  33332 4666777888999999999999983221       123456678999


Q ss_pred             EEEEEEECCChhh-HHHHHHHHHH----------------------------------------Hhccccc---------
Q 030289           86 GLIFVVDSNDRER-IGEAKDELHR----------------------------------------MLSEDEL---------  115 (180)
Q Consensus        86 ~~i~v~d~~~~~~-~~~~~~~~~~----------------------------------------~~~~~~~---------  115 (180)
                      .+++|+|+..... .+.+...+..                                        +++....         
T Consensus       143 lIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~  222 (365)
T COG1163         143 LIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIRE  222 (365)
T ss_pred             EEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEec
Confidence            9999999974432 3333322211                                        1111000         


Q ss_pred             ---------------CCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHHhh
Q 030289          116 ---------------REAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVS  177 (180)
Q Consensus       116 ---------------~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  177 (180)
                                     .=+|.+.|.||.|+......+.+.+..          ..+.+||..+.|++++.+.+.+.+.
T Consensus       223 dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~~----------~~v~isa~~~~nld~L~e~i~~~L~  289 (365)
T COG1163         223 DVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARKP----------NSVPISAKKGINLDELKERIWDVLG  289 (365)
T ss_pred             CCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHhcc----------ceEEEecccCCCHHHHHHHHHHhhC
Confidence                           124678899999988744444443332          5799999999999999999998763

>PRK12740 elongation factor G; Reviewed

Probab=99.68  E-value=1.9e-15  Score=121.40  Aligned_cols=105  Identities=20%  Similarity=0.157  Sum_probs=78.7

Q ss_pred             EcCCCCChHHHHHHhhcCC--cc-------------------ccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhh
Q 030289           22 VGLDAAGKTTILYKLKLGE--IV-------------------TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHY   80 (180)
Q Consensus        22 ~G~~~~GKStli~~l~~~~--~~-------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~   80 (180)
                      +|+.++|||||+++|+...  ..                   +...|++.....+...+..+.+|||||+..+...+..+
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~   80 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA   80 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence            6999999999999995322  00                   12235666667788899999999999998887788889


Q ss_pred             ccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289           81 FQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN  131 (180)
Q Consensus        81 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~  131 (180)
                      +..+|++++|+|+++....... ..+....    ..++|+++|+||+|...
T Consensus        81 l~~aD~vllvvd~~~~~~~~~~-~~~~~~~----~~~~p~iiv~NK~D~~~  126 (668)
T PRK12740         81 LRVLDGAVVVVCAVGGVEPQTE-TVWRQAE----KYGVPRIIFVNKMDRAG  126 (668)
T ss_pred             HHHhCeEEEEEeCCCCcCHHHH-HHHHHHH----HcCCCEEEEEECCCCCC
Confidence            9999999999999875443332 2222222    23688999999999875

>PRK00007 elongation factor G; Reviewed

Probab=99.68  E-value=1.9e-15  Score=121.45  Aligned_cols=114  Identities=17%  Similarity=0.091  Sum_probs=82.5

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCC--c-------------------cccccccceeEEEEEEcCeEEEEEEcCCCC
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGE--I-------------------VTTIPTIGFNVETVEYKNVSFTVWDVGGQD   71 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~--~-------------------~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~   71 (180)
                      .++..||+|+|++++|||||+++|+...  .                   .....|+......+...+..+.++||||+.
T Consensus         7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~   86 (693)
T PRK00007          7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV   86 (693)
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence            4556799999999999999999997311  0                   011235555566777789999999999998


Q ss_pred             CChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289           72 KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN  131 (180)
Q Consensus        72 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~  131 (180)
                      .+.......+..+|++++|+|+...-.-+. ...+... .   ..++|.++++||+|+..
T Consensus        87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~-~---~~~~p~iv~vNK~D~~~  141 (693)
T PRK00007         87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQA-D---KYKVPRIAFVNKMDRTG  141 (693)
T ss_pred             HHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHH-H---HcCCCEEEEEECCCCCC
Confidence            877667778889999999999875422222 2222222 2   24678899999999875

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.68  E-value=1.5e-15  Score=109.05  Aligned_cols=158  Identities=24%  Similarity=0.222  Sum_probs=102.6

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCC--ccccc-cccceeEEEEEE-cCeEEEEEEcCCCCCC-------hhhHHhhccccCE
Q 030289           18 RILMVGLDAAGKTTILYKLKLGE--IVTTI-PTIGFNVETVEY-KNVSFTVWDVGGQDKI-------RPLWRHYFQNTHG   86 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~--~~~~~-~t~~~~~~~~~~-~~~~~~i~D~~G~~~~-------~~~~~~~~~~~~~   86 (180)
                      -|.++|.|++|||||++.++.-+  ...|. .|.-++...+.. ....|.+-|.||--+-       -.....-+.+|.+
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~v  240 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRV  240 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhhe
Confidence            46799999999999999998766  33332 244556666665 5567999999993322       1113344567999


Q ss_pred             EEEEEECCChh---hHHHHHHHHHHHhcc-cccCCCeEEEEEecCCCCCC-CCHhHHHhHhCCCccCCcceEEEEeeccC
Q 030289           87 LIFVVDSNDRE---RIGEAKDELHRMLSE-DELREAVLLVFANKQDLPNA-MSVSEVTDKLGLHSLRQRRWYIQAACATS  161 (180)
Q Consensus        87 ~i~v~d~~~~~---~~~~~~~~~~~~~~~-~~~~~~~iiiv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  161 (180)
                      ++.|+|++..+   ..+.......++..+ ....+.|.++|+||+|+..+ ...+.+.+.+.....  ....++ +|+.+
T Consensus       241 L~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~--~~~~~~-ISa~t  317 (369)
T COG0536         241 LLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALG--WEVFYL-ISALT  317 (369)
T ss_pred             eEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcC--CCccee-eehhc
Confidence            99999997543   233333333332222 23467899999999996553 334444444432211  111222 99999


Q ss_pred             CCChHHHHHHHHHHhhh
Q 030289          162 GQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       162 ~~~i~~~~~~l~~~~~~  178 (180)
                      ++|++++...+.+.+.+
T Consensus       318 ~~g~~~L~~~~~~~l~~  334 (369)
T COG0536         318 REGLDELLRALAELLEE  334 (369)
T ss_pred             ccCHHHHHHHHHHHHHH
Confidence            99999999999887765

>COG2262 HflX GTPases [General function prediction only]

Probab=99.67  E-value=7.7e-15  Score=107.91  Aligned_cols=155  Identities=19%  Similarity=0.135  Sum_probs=112.0

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC-c--cccccccceeEEEEEEc-CeEEEEEEcCCCCCC--------hhhHHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE-I--VTTIPTIGFNVETVEYK-NVSFTVWDVGGQDKI--------RPLWRHYF   81 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~--~~~~~t~~~~~~~~~~~-~~~~~i~D~~G~~~~--------~~~~~~~~   81 (180)
                      ..-+.|.++|=.++|||||+|+|.+.. .  ....+|.++....+... +..+.+-||.|--.-        ...+..-.
T Consensus       190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~  269 (411)
T COG2262         190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEV  269 (411)
T ss_pred             cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHh
Confidence            456789999999999999999999766 2  23356888888888875 689999999993321        11122233


Q ss_pred             cccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC-HhHHHhHhCCCccCCcceEEEEeecc
Q 030289           82 QNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS-VSEVTDKLGLHSLRQRRWYIQAACAT  160 (180)
Q Consensus        82 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~  160 (180)
                      ..+|.++.|+|+++++..+.+.....-+. ......+|+++|.||.|+..+.. ...+....        . ..+.+||+
T Consensus       270 ~~aDlllhVVDaSdp~~~~~~~~v~~vL~-el~~~~~p~i~v~NKiD~~~~~~~~~~~~~~~--------~-~~v~iSA~  339 (411)
T COG2262         270 KEADLLLHVVDASDPEILEKLEAVEDVLA-EIGADEIPIILVLNKIDLLEDEEILAELERGS--------P-NPVFISAK  339 (411)
T ss_pred             hcCCEEEEEeecCChhHHHHHHHHHHHHH-HcCCCCCCEEEEEecccccCchhhhhhhhhcC--------C-CeEEEEec
Confidence            57999999999999976666655544443 32335699999999999876543 11111110        1 47999999


Q ss_pred             CCCChHHHHHHHHHHhhh
Q 030289          161 SGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       161 ~~~~i~~~~~~l~~~~~~  178 (180)
                      +++|++++.+.|.+.+..
T Consensus       340 ~~~gl~~L~~~i~~~l~~  357 (411)
T COG2262         340 TGEGLDLLRERIIELLSG  357 (411)
T ss_pred             cCcCHHHHHHHHHHHhhh
Confidence            999999999999988763

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.65  E-value=2e-15  Score=112.51  Aligned_cols=155  Identities=17%  Similarity=0.185  Sum_probs=115.1

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC------------------ccccccccceeEEEEEE-----cCeEEEEEEcCCC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE------------------IVTTIPTIGFNVETVEY-----KNVSFTVWDVGGQ   70 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~------------------~~~~~~t~~~~~~~~~~-----~~~~~~i~D~~G~   70 (180)
                      .+.-|..|+-+-..|||||..|++...                  -.+...|+......+.+     +.+.+.++|||||
T Consensus         7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH   86 (603)
T COG0481           7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH   86 (603)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence            445578899999999999999996421                  01112233333333333     4588999999999


Q ss_pred             CCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC---CHhHHHhHhCCCcc
Q 030289           71 DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM---SVSEVTDKLGLHSL  147 (180)
Q Consensus        71 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~---~~~~~~~~~~~~~~  147 (180)
                      -.|..-..+.+.-|.++++++|++..-.-+.+.+.+..+-     .+.-++-|+||+|++...   -..++.+.+++...
T Consensus        87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle-----~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~  161 (603)
T COG0481          87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDAS  161 (603)
T ss_pred             cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH-----cCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcc
Confidence            9987777777788999999999997666677777777662     456799999999998742   23455666666543


Q ss_pred             CCcceEEEEeeccCCCChHHHHHHHHHHhhh
Q 030289          148 RQRRWYIQAACATSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       148 ~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  178 (180)
                           ..+.+||++|.||+++++.+++.+..
T Consensus       162 -----dav~~SAKtG~gI~~iLe~Iv~~iP~  187 (603)
T COG0481         162 -----DAVLVSAKTGIGIEDVLEAIVEKIPP  187 (603)
T ss_pred             -----hheeEecccCCCHHHHHHHHHhhCCC
Confidence                 57999999999999999999998764

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.65  E-value=7.4e-15  Score=111.14  Aligned_cols=161  Identities=18%  Similarity=0.149  Sum_probs=116.2

Q ss_pred             hhcccCccEEEEEcCCCCChHHHHHHhhcCCcccc---ccccceeEEEEEE-cCeEEEEEEcCCCCCChhhHHhhccccC
Q 030289           10 MLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEY-KNVSFTVWDVGGQDKIRPLWRHYFQNTH   85 (180)
Q Consensus        10 ~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~---~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~   85 (180)
                      ..+..+..=|.|+|+...|||||+..|-+......   ..|..+.-.++.. .+..+.+.|||||.-|..++.+-..-.|
T Consensus       147 ~~l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtD  226 (683)
T KOG1145|consen  147 KLLEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMRARGANVTD  226 (683)
T ss_pred             hhcCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHHHHhccCcccc
Confidence            34446778899999999999999999987663322   2344444444444 6789999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCcc--C--CcceEEEEeeccC
Q 030289           86 GLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSL--R--QRRWYIQAACATS  161 (180)
Q Consensus        86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~Sa~~  161 (180)
                      .+++|+.++|.-.-+ ..+-+.    +....++|+++.+||||.+. ..++.+..++.....  .  .-..+++++||++
T Consensus       227 IvVLVVAadDGVmpQ-T~EaIk----hAk~A~VpiVvAinKiDkp~-a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~  300 (683)
T KOG1145|consen  227 IVVLVVAADDGVMPQ-TLEAIK----HAKSANVPIVVAINKIDKPG-ANPEKVKRELLSQGIVVEDLGGDVQVIPISALT  300 (683)
T ss_pred             EEEEEEEccCCccHh-HHHHHH----HHHhcCCCEEEEEeccCCCC-CCHHHHHHHHHHcCccHHHcCCceeEEEeeccc
Confidence            999999998642211 122222    22346899999999999875 455555555443332  1  2356899999999


Q ss_pred             CCChHHHHHHHHHHh
Q 030289          162 GQGLYEGLDWLSSNV  176 (180)
Q Consensus       162 ~~~i~~~~~~l~~~~  176 (180)
                      |+|++.+-+.+.-..
T Consensus       301 g~nl~~L~eaill~A  315 (683)
T KOG1145|consen  301 GENLDLLEEAILLLA  315 (683)
T ss_pred             CCChHHHHHHHHHHH
Confidence            999999988876543

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.64  E-value=3.2e-15  Score=109.12  Aligned_cols=134  Identities=24%  Similarity=0.446  Sum_probs=105.4

Q ss_pred             ccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCCh----------hhHHHHHHHHHHHhcccc
Q 030289           45 IPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDR----------ERIGEAKDELHRMLSEDE  114 (180)
Q Consensus        45 ~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~  114 (180)
                      .+|.|+....+.+++..++++|++||..-+.-|.+++.++++++||+++++.          ..+.+....+..++++.+
T Consensus       180 ~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~  259 (354)
T KOG0082|consen  180 VPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKW  259 (354)
T ss_pred             cCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcc
Confidence            5689999999999999999999999988888899999999999999998753          355666778899999988


Q ss_pred             cCCCeEEEEEecCCCCCC-----------------CCHhHHHhH----hC-CCccCCcceEEEEeeccCCCChHHHHHHH
Q 030289          115 LREAVLLVFANKQDLPNA-----------------MSVSEVTDK----LG-LHSLRQRRWYIQAACATSGQGLYEGLDWL  172 (180)
Q Consensus       115 ~~~~~iiiv~nK~D~~~~-----------------~~~~~~~~~----~~-~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  172 (180)
                      ..+.++++++||.|+..+                 ...++....    +. +.....+.+.++.++|.+-.+|+.+|+.+
T Consensus       260 F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av  339 (354)
T KOG0082|consen  260 FANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAV  339 (354)
T ss_pred             cccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHH
Confidence            899999999999998652                 111111111    11 11112256778899999999999999999


Q ss_pred             HHHhhh
Q 030289          173 SSNVSA  178 (180)
Q Consensus       173 ~~~~~~  178 (180)
                      .+.+.+
T Consensus       340 ~d~Ii~  345 (354)
T KOG0082|consen  340 TDTIIQ  345 (354)
T ss_pred             HHHHHH
Confidence            988765

>PRK13768 GTPase; Provisional

Probab=99.63  E-value=2.9e-15  Score=106.88  Aligned_cols=118  Identities=15%  Similarity=0.132  Sum_probs=73.6

Q ss_pred             eEEEEEEcCCCCCC---hhhHHhhccc-----cCEEEEEEECCChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCC
Q 030289           60 VSFTVWDVGGQDKI---RPLWRHYFQN-----THGLIFVVDSNDRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLP  130 (180)
Q Consensus        60 ~~~~i~D~~G~~~~---~~~~~~~~~~-----~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~  130 (180)
                      ..+.+||+||+.+.   +..+..+++.     .+++++++|+.......... .++..... ....+.|+++|+||+|+.
T Consensus        97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~-~~~~~~~~i~v~nK~D~~  175 (253)
T PRK13768         97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSV-QLRLGLPQIPVLNKADLL  175 (253)
T ss_pred             CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHH-HHHcCCCEEEEEEhHhhc
Confidence            37999999997653   3333333332     78999999996533222221 22111111 012478999999999998


Q ss_pred             CCCCHhHHHhHhCC----------C-------------ccCC--cceEEEEeeccCCCChHHHHHHHHHHhhh
Q 030289          131 NAMSVSEVTDKLGL----------H-------------SLRQ--RRWYIQAACATSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       131 ~~~~~~~~~~~~~~----------~-------------~~~~--~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  178 (180)
                      +..+.+.....+..          .             ..++  ...+++++|+.++.|++++++++.+.+..
T Consensus       176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~  248 (253)
T PRK13768        176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCG  248 (253)
T ss_pred             CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCC
Confidence            76554443332221          0             0111  22478999999999999999999887753

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.63  E-value=1.4e-14  Score=109.03  Aligned_cols=78  Identities=27%  Similarity=0.382  Sum_probs=54.5

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCCcc--cc-ccccceeEEEEE------------------------EcCeEEEEEEcCC
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGEIV--TT-IPTIGFNVETVE------------------------YKNVSFTVWDVGG   69 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~~~--~~-~~t~~~~~~~~~------------------------~~~~~~~i~D~~G   69 (180)
                      ++|+++|.|+||||||+|+|++....  .+ ..|+......+.                        .....+++||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            68999999999999999999977622  22 123333333222                        1236789999999


Q ss_pred             C----CCChhhHHhh---ccccCEEEEEEECC
Q 030289           70 Q----DKIRPLWRHY---FQNTHGLIFVVDSN   94 (180)
Q Consensus        70 ~----~~~~~~~~~~---~~~~~~~i~v~d~~   94 (180)
                      .    .+...+...+   ++++|++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            4    3333444444   78999999999986

>PRK09866 hypothetical protein; Provisional

Probab=99.63  E-value=2e-14  Score=111.65  Aligned_cols=112  Identities=15%  Similarity=0.126  Sum_probs=70.5

Q ss_pred             eEEEEEEcCCCCCC-----hhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC
Q 030289           60 VSFTVWDVGGQDKI-----RPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS  134 (180)
Q Consensus        60 ~~~~i~D~~G~~~~-----~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~  134 (180)
                      .++.++||||-...     .......+..+|+++||+|..+.-+..  ...+...+... ....|+++|+||+|+.+...
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~--DeeIlk~Lkk~-~K~~PVILVVNKIDl~dree  306 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSIS--DEEVREAILAV-GQSVPLYVLVNKFDQQDRNS  306 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChh--HHHHHHHHHhc-CCCCCEEEEEEcccCCCccc
Confidence            46889999996542     233455788999999999997642221  12222222221 11259999999999864222


Q ss_pred             --HhHHHhHhCCC--ccCCcceEEEEeeccCCCChHHHHHHHHH
Q 030289          135 --VSEVTDKLGLH--SLRQRRWYIQAACATSGQGLYEGLDWLSS  174 (180)
Q Consensus       135 --~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  174 (180)
                        .+.+.......  ........+|++||+.|.|++++.+.+..
T Consensus       307 ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        307 DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence              33333322111  11112346999999999999999999876

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.62  E-value=1.4e-15  Score=93.81  Aligned_cols=138  Identities=23%  Similarity=0.194  Sum_probs=92.7

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCC----CCCChhhHHhhccccCEEEEEEEC
Q 030289           18 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGG----QDKIRPLWRHYFQNTHGLIFVVDS   93 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G----~~~~~~~~~~~~~~~~~~i~v~d~   93 (180)
                      |++++|+.|+|||||.+.|-+... .+..|..+.+..       --.+||||    +.++-........++|++++|-.+
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~-lykKTQAve~~d-------~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~a   74 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDT-LYKKTQAVEFND-------KGDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAA   74 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchh-hhcccceeeccC-------ccccCCchhhhhhhHHHHHHHHHhhccceeeeeecc
Confidence            789999999999999999987662 122232222211       12468999    333333344556789999999999


Q ss_pred             CChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHH
Q 030289           94 NDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLS  173 (180)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  173 (180)
                      +++++.  +.--+..      ....|+|-|.+|.|+.++.+.+.....+....+    -++|++|+.++.|++++++++.
T Consensus        75 nd~~s~--f~p~f~~------~~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa----~~IF~~s~~d~~gv~~l~~~L~  142 (148)
T COG4917          75 NDPESR--FPPGFLD------IGVKKVIGVVTKADLAEDADISLVKRWLREAGA----EPIFETSAVDNQGVEELVDYLA  142 (148)
T ss_pred             cCcccc--CCccccc------ccccceEEEEecccccchHhHHHHHHHHHHcCC----cceEEEeccCcccHHHHHHHHH
Confidence            887642  1111111      133569999999999986666555544443332    2699999999999999999987


Q ss_pred             HH
Q 030289          174 SN  175 (180)
Q Consensus       174 ~~  175 (180)
                      ..
T Consensus       143 ~~  144 (148)
T COG4917         143 SL  144 (148)
T ss_pred             hh
Confidence            53

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.60  E-value=1.7e-14  Score=116.41  Aligned_cols=113  Identities=20%  Similarity=0.094  Sum_probs=79.4

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC---------------cc----ccccccceeEEE----EEEcCeEEEEEEcCCC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE---------------IV----TTIPTIGFNVET----VEYKNVSFTVWDVGGQ   70 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~---------------~~----~~~~t~~~~~~~----~~~~~~~~~i~D~~G~   70 (180)
                      .+..||+++|+.++|||||+++|+...               +.    +...|+......    +...+..+.+|||||+
T Consensus        17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~   96 (720)
T TIGR00490        17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH   96 (720)
T ss_pred             ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence            456799999999999999999997421               11    122244433222    4446789999999999


Q ss_pred             CCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289           71 DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN  131 (180)
Q Consensus        71 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~  131 (180)
                      ..+.......++.+|++++|+|+.+.-..+. ...+....    ..+.|.++++||+|...
T Consensus        97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t-~~~~~~~~----~~~~p~ivviNKiD~~~  152 (720)
T TIGR00490        97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQT-ETVLRQAL----KENVKPVLFINKVDRLI  152 (720)
T ss_pred             cccHHHHHHHHHhcCEEEEEEecCCCCCccH-HHHHHHHH----HcCCCEEEEEEChhccc
Confidence            9998888899999999999999875322111 12222221    23567889999999864

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.58  E-value=6.1e-15  Score=104.06  Aligned_cols=115  Identities=14%  Similarity=0.025  Sum_probs=57.7

Q ss_pred             EEEEEEcCCCCCChhhHHhhc--------cccCEEEEEEECCChhhH-HHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289           61 SFTVWDVGGQDKIRPLWRHYF--------QNTHGLIFVVDSNDRERI-GEAKDELHRMLSEDELREAVLLVFANKQDLPN  131 (180)
Q Consensus        61 ~~~i~D~~G~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~  131 (180)
                      .+.++|||||.++...+....        ...-++++++|+....+- .-+..++..... ....+.|.+.|+||+|+.+
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~-~~~~~lP~vnvlsK~Dl~~  170 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSI-MLRLELPHVNVLSKIDLLS  170 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHH-HHHHTSEEEEEE--GGGS-
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHH-HhhCCCCEEEeeeccCccc
Confidence            799999999987644433322        234578999997633221 122222222211 1124789999999999987


Q ss_pred             CCC---------H-----------hHHHhHhCCCccCCcce-EEEEeeccCCCChHHHHHHHHHHh
Q 030289          132 AMS---------V-----------SEVTDKLGLHSLRQRRW-YIQAACATSGQGLYEGLDWLSSNV  176 (180)
Q Consensus       132 ~~~---------~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~  176 (180)
                      +..         .           ..+...+......-... .++++|+.+++++++++..+-+++
T Consensus       171 ~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  171 KYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             chhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            210         0           11111111111111223 799999999999999999987765

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.57  E-value=2.4e-13  Score=98.15  Aligned_cols=117  Identities=13%  Similarity=0.198  Sum_probs=72.6

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCCc--ccccc--ccceeEEEEEEcCeEEEEEEcCCCCCChhh-------HHhhc
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNVSFTVWDVGGQDKIRPL-------WRHYF   81 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~~~   81 (180)
                      ..+.++|+++|.+|+||||++|++++.+.  .....  +..........++.++.+|||||.......       ...++
T Consensus        35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l  114 (313)
T TIGR00991        35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFL  114 (313)
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHh
Confidence            36789999999999999999999998762  22222  222222333457889999999996654222       12222


Q ss_pred             --cccCEEEEEEECCC--hhhH-HHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289           82 --QNTHGLIFVVDSND--RERI-GEAKDELHRMLSEDELREAVLLVFANKQDLPN  131 (180)
Q Consensus        82 --~~~~~~i~v~d~~~--~~~~-~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~  131 (180)
                        ...|+++||.+++.  .... ..+.+.+...+...  .-.+.++++|++|..+
T Consensus       115 ~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~--iw~~~IVVfTh~d~~~  167 (313)
T TIGR00991       115 LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKD--IWRKSLVVLTHAQFSP  167 (313)
T ss_pred             hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhh--hhccEEEEEECCccCC
Confidence              15899999965542  2211 22233344333221  1245899999999663

>cd01882 BMS1 Bms1

Probab=99.57  E-value=5.3e-14  Score=98.90  Aligned_cols=142  Identities=12%  Similarity=0.042  Sum_probs=85.1

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVD   92 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   92 (180)
                      .....|+++|++|+|||||++.+.... ........+. +......+.++.++||||..  . ......+.+|++++++|
T Consensus        37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~i~~~~~~~i~~vDtPg~~--~-~~l~~ak~aDvVllviD  112 (225)
T cd01882          37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-ITVVTGKKRRLTFIECPNDI--N-AMIDIAKVADLVLLLID  112 (225)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EEEEecCCceEEEEeCCchH--H-HHHHHHHhcCEEEEEEe
Confidence            556789999999999999999998653 1111111221 11233367889999999854  2 23345678999999999


Q ss_pred             CCChhhHHHHHHHHHHHhcccccCCCe-EEEEEecCCCCCCCC-HhHHHhHhCCCcc--CCcceEEEEeeccCCCC
Q 030289           93 SNDRERIGEAKDELHRMLSEDELREAV-LLVFANKQDLPNAMS-VSEVTDKLGLHSL--RQRRWYIQAACATSGQG  164 (180)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-iiiv~nK~D~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~  164 (180)
                      ++.....  ....+...+..   .+.| +++|+||+|+.++.. .++....+.....  .-.+.+++.+||+++-.
T Consensus       113 a~~~~~~--~~~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~  183 (225)
T cd01882         113 ASFGFEM--ETFEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGR  183 (225)
T ss_pred             cCcCCCH--HHHHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence            8753321  12222222222   3456 455999999874322 2333322221111  11245899999998743

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>TIGR00101 ureG urease accessory protein UreG

Probab=99.56  E-value=1.3e-13  Score=95.00  Aligned_cols=104  Identities=15%  Similarity=0.175  Sum_probs=65.5

Q ss_pred             eEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC--CCHhH
Q 030289           60 VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA--MSVSE  137 (180)
Q Consensus        60 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~--~~~~~  137 (180)
                      .++.++++.|..-.....+   .-+|.++.|+|+.+.+....  ....++       ...-++++||+|+.+.  ...+.
T Consensus        92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~--~~~~qi-------~~ad~~~~~k~d~~~~~~~~~~~  159 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR--KGGPGI-------TRSDLLVINKIDLAPMVGADLGV  159 (199)
T ss_pred             CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh--hhHhHh-------hhccEEEEEhhhccccccccHHH
Confidence            4677888888432222221   12688999999986554321  111111       1223899999999863  33433


Q ss_pred             HHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHHhhh
Q 030289          138 VTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  178 (180)
                      +.+.....   +.+.++++||+++|+|++++++++.+.+.-
T Consensus       160 ~~~~~~~~---~~~~~i~~~Sa~~g~gi~el~~~i~~~~~~  197 (199)
T TIGR00101       160 MERDAKKM---RGEKPFIFTNLKTKEGLDTVIDWIEHYALL  197 (199)
T ss_pred             HHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence            33332221   235789999999999999999999987653

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.56  E-value=3.7e-14  Score=98.84  Aligned_cols=161  Identities=17%  Similarity=0.126  Sum_probs=93.9

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCC-cccc----ccccceeEEEEEEcCeEEEEEEcCCCCC--C--hhh---H----Hhh
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGE-IVTT----IPTIGFNVETVEYKNVSFTVWDVGGQDK--I--RPL---W----RHY   80 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~-~~~~----~~t~~~~~~~~~~~~~~~~i~D~~G~~~--~--~~~---~----~~~   80 (180)
                      .+|+++|.+|+||||++|.+++.. +...    ..|..+........+..+.++||||-..  .  ...   .    ...
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~   80 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC   80 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence            489999999999999999999887 3322    2255666666678999999999999321  1  111   1    123


Q ss_pred             ccccCEEEEEEECCCh-hhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhC---CC-ccCCcceEEE
Q 030289           81 FQNTHGLIFVVDSNDR-ERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLG---LH-SLRQRRWYIQ  155 (180)
Q Consensus        81 ~~~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~---~~-~~~~~~~~~~  155 (180)
                      ..+.|++++|+..... +.-.....++..++.....  .-++|+.|..|...+...++..+...   +. ..+..+-.++
T Consensus        81 ~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~~--k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~  158 (212)
T PF04548_consen   81 SPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEIW--KHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYH  158 (212)
T ss_dssp             TT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGGG--GGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred             cCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHHH--hHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEEE
Confidence            3568999999998732 1123334455555543222  23788889998776665544433111   01 1122333455


Q ss_pred             Eeecc------CCCChHHHHHHHHHHhhhc
Q 030289          156 AACAT------SGQGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       156 ~~Sa~------~~~~i~~~~~~l~~~~~~~  179 (180)
                      ..+..      ....+.+++..+-+.+.+.
T Consensus       159 ~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n  188 (212)
T PF04548_consen  159 VFNNKTKDKEKDESQVSELLEKIEEMVQEN  188 (212)
T ss_dssp             ECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence            55443      2245778888777766554

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.54  E-value=1.5e-13  Score=113.13  Aligned_cols=141  Identities=21%  Similarity=0.226  Sum_probs=90.2

Q ss_pred             CChHHHHHHhhcCCcccccc---ccceeEEEEEEc------------------CeEEEEEEcCCCCCChhhHHhhccccC
Q 030289           27 AGKTTILYKLKLGEIVTTIP---TIGFNVETVEYK------------------NVSFTVWDVGGQDKIRPLWRHYFQNTH   85 (180)
Q Consensus        27 ~GKStli~~l~~~~~~~~~~---t~~~~~~~~~~~------------------~~~~~i~D~~G~~~~~~~~~~~~~~~~   85 (180)
                      ++||||+.++.+.......+   |..+....+...                  .-.+.+|||||++.+..+....+..+|
T Consensus       472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD  551 (1049)
T PRK14845        472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD  551 (1049)
T ss_pred             cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence            35999999998766433222   333332222221                  113899999999999888888888999


Q ss_pred             EEEEEEECCCh---hhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC------------------HhHHH-----
Q 030289           86 GLIFVVDSNDR---ERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS------------------VSEVT-----  139 (180)
Q Consensus        86 ~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~------------------~~~~~-----  139 (180)
                      ++++|+|+++.   .+++.+    ..+ ..   .++|+++++||+|+.....                  .+++.     
T Consensus       552 ivlLVVDa~~Gi~~qT~e~I----~~l-k~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~  623 (1049)
T PRK14845        552 LAVLVVDINEGFKPQTIEAI----NIL-RQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYE  623 (1049)
T ss_pred             EEEEEEECcccCCHhHHHHH----HHH-HH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHH
Confidence            99999999862   322222    222 22   3679999999999864211                  01111     


Q ss_pred             -----hHhCCCc-------cCCcceEEEEeeccCCCChHHHHHHHHHH
Q 030289          140 -----DKLGLHS-------LRQRRWYIQAACATSGQGLYEGLDWLSSN  175 (180)
Q Consensus       140 -----~~~~~~~-------~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  175 (180)
                           ...+...       -....++++++||++|+||+++..++...
T Consensus       624 v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l  671 (1049)
T PRK14845        624 LIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL  671 (1049)
T ss_pred             HhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence                 0111110       01235689999999999999999888644

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.54  E-value=3.4e-13  Score=95.77  Aligned_cols=119  Identities=9%  Similarity=0.056  Sum_probs=75.3

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhhcCCccc---c-ccccceeEEEEEEcCeEEEEEEcCCCCCChh---h-------H
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLKLGEIVT---T-IPTIGFNVETVEYKNVSFTVWDVGGQDKIRP---L-------W   77 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~---~-~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~-------~   77 (180)
                      .....++|+++|.+|||||||+|+|++.....   . ..|...........+.++.+|||||-.....   .       .
T Consensus        27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I  106 (249)
T cd01853          27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSI  106 (249)
T ss_pred             hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence            44678999999999999999999999876221   1 1244444444455788999999999654411   1       2


Q ss_pred             Hhhcc--ccCEEEEEEECCChh-hH--HHHHHHHHHHhcccccCCCeEEEEEecCCCCCC
Q 030289           78 RHYFQ--NTHGLIFVVDSNDRE-RI--GEAKDELHRMLSEDELREAVLLVFANKQDLPNA  132 (180)
Q Consensus        78 ~~~~~--~~~~~i~v~d~~~~~-~~--~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~  132 (180)
                      ..++.  ..|++++|..++... ..  ..+.+.+.......  .-.++++|.||+|...+
T Consensus       107 ~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~--i~~~~ivV~T~~d~~~p  164 (249)
T cd01853         107 KRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPS--IWRNAIVVLTHAASSPP  164 (249)
T ss_pred             HHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChh--hHhCEEEEEeCCccCCC
Confidence            22333  468888887665321 11  13334444443321  11458999999997643

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.54  E-value=4.8e-14  Score=103.48  Aligned_cols=107  Identities=13%  Similarity=0.112  Sum_probs=70.9

Q ss_pred             CeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCH---
Q 030289           59 NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSV---  135 (180)
Q Consensus        59 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~---  135 (180)
                      +..+.++||+|.......   ....+|.++++.+....+.++....-...+         .-++|+||+|+......   
T Consensus       148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~gi~E~---------aDIiVVNKaDl~~~~~a~~~  215 (332)
T PRK09435        148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKKGIMEL---------ADLIVINKADGDNKTAARRA  215 (332)
T ss_pred             CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHhhhhhh---------hheEEeehhcccchhHHHHH
Confidence            578999999996633322   456799999998765556555544322222         13899999998764332   


Q ss_pred             -hHHHhHhCCCccC--CcceEEEEeeccCCCChHHHHHHHHHHhh
Q 030289          136 -SEVTDKLGLHSLR--QRRWYIQAACATSGQGLYEGLDWLSSNVS  177 (180)
Q Consensus       136 -~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  177 (180)
                       .++...+......  ....+++.+|+.++.|++++++.+.+.+.
T Consensus       216 ~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~  260 (332)
T PRK09435        216 AAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA  260 (332)
T ss_pred             HHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence             2333343332111  12247999999999999999999988653

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.53  E-value=1.9e-13  Score=101.94  Aligned_cols=159  Identities=21%  Similarity=0.212  Sum_probs=112.1

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCC--ccccc-----------------cccceeEEEEEEcCeEEEEEEcCCCCCChh
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGE--IVTTI-----------------PTIGFNVETVEYKNVSFTVWDVGGQDKIRP   75 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~--~~~~~-----------------~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~   75 (180)
                      +--||+||-+...|||||+..|+.+.  +.+..                 .|+-..-..+.+.++.+.|+|||||-.|..
T Consensus         4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG   83 (603)
T COG1217           4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG   83 (603)
T ss_pred             ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence            44589999999999999999998654  32221                 122233345677889999999999999998


Q ss_pred             hHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC---HhHHHhHhCCCc--cCCc
Q 030289           76 LWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS---VSEVTDKLGLHS--LRQR  150 (180)
Q Consensus        76 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~---~~~~~~~~~~~~--~~~~  150 (180)
                      -.++.+.-.|++++++|+... ........+...+.    .+.+-|+|+||+|.+..+.   +++..+.+....  -.++
T Consensus        84 EVERvl~MVDgvlLlVDA~EG-pMPQTrFVlkKAl~----~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQL  158 (603)
T COG1217          84 EVERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALA----LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQL  158 (603)
T ss_pred             hhhhhhhhcceEEEEEEcccC-CCCchhhhHHHHHH----cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhC
Confidence            899999999999999999742 22334444444443    3455688899999887543   222222222111  2456


Q ss_pred             ceEEEEeeccCCC----------ChHHHHHHHHHHhhh
Q 030289          151 RWYIQAACATSGQ----------GLYEGLDWLSSNVSA  178 (180)
Q Consensus       151 ~~~~~~~Sa~~~~----------~i~~~~~~l~~~~~~  178 (180)
                      .+|++..|+++|.          ++.-+|+.|++.+..
T Consensus       159 dFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~  196 (603)
T COG1217         159 DFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPA  196 (603)
T ss_pred             CCcEEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence            7899999998764          688899988887654

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.53  E-value=2.1e-14  Score=107.74  Aligned_cols=163  Identities=13%  Similarity=0.167  Sum_probs=117.1

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC--ccccc-cccceeEEEEEEcCeEEEEEEcCCCCCC----hhh----H-Hhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE--IVTTI-PTIGFNVETVEYKNVSFTVWDVGGQDKI----RPL----W-RHYF   81 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~--~~~~~-~t~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~----~-~~~~   81 (180)
                      .+.-..++.|-|++|||||+|.+....  ...|. .|.++....+.+.-..++++||||--..    +..    . -...
T Consensus       166 p~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALA  245 (620)
T KOG1490|consen  166 PNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALA  245 (620)
T ss_pred             CCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHH
Confidence            446688999999999999999998766  33332 4556666777777788999999992211    111    1 1111


Q ss_pred             cccCEEEEEEECCCh--hhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeec
Q 030289           82 QNTHGLIFVVDSNDR--ERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACA  159 (180)
Q Consensus        82 ~~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (180)
                      .--.+|+|+.|++..  .+++...+.++.+...  ..+.|.|+|+||+|+....++++-.+++-.......+++++.+|.
T Consensus       246 HLraaVLYfmDLSe~CGySva~QvkLfhsIKpL--FaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~  323 (620)
T KOG1490|consen  246 HLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPL--FANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSC  323 (620)
T ss_pred             HhhhhheeeeechhhhCCCHHHHHHHHHHhHHH--hcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecc
Confidence            223578999999864  5777777777777543  467899999999999887777665544443333445689999999


Q ss_pred             cCCCChHHHHHHHHHHhhh
Q 030289          160 TSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       160 ~~~~~i~~~~~~l~~~~~~  178 (180)
                      .+.+|+-++....++.+..
T Consensus       324 ~~eegVm~Vrt~ACe~LLa  342 (620)
T KOG1490|consen  324 VQEEGVMDVRTTACEALLA  342 (620)
T ss_pred             cchhceeeHHHHHHHHHHH
Confidence            9999999888877777654

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.52  E-value=2.6e-13  Score=97.15  Aligned_cols=162  Identities=13%  Similarity=0.095  Sum_probs=110.8

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEE----cCeEEEEEEcCCCCCChhhHHhhcccc----CE
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWRHYFQNT----HG   86 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~----~~   86 (180)
                      ..-+|+++|+.|+||||||.+|-+.+........++.+-.+.-    +..++.+|-..|+.....+....+.-.    -.
T Consensus        51 sgk~VlvlGdn~sGKtsLi~klqg~e~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetl  130 (473)
T KOG3905|consen   51 SGKNVLVLGDNGSGKTSLISKLQGSETVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETL  130 (473)
T ss_pred             CCCeEEEEccCCCchhHHHHHhhcccccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceE
Confidence            3678999999999999999999988855544555555544433    335789999999877766666666533    35


Q ss_pred             EEEEEECCChh-hHHHHHHHHHHHhccccc--------------------------------------------------
Q 030289           87 LIFVVDSNDRE-RIGEAKDELHRMLSEDEL--------------------------------------------------  115 (180)
Q Consensus        87 ~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~--------------------------------------------------  115 (180)
                      +|++.|.+++. -++.+..|...+..+...                                                  
T Consensus       131 viltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ll  210 (473)
T KOG3905|consen  131 VILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLL  210 (473)
T ss_pred             EEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccccc
Confidence            78889999883 345555554433221100                                                  


Q ss_pred             ----------CCCeEEEEEecCCCCCC----C-----CHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHHh
Q 030289          116 ----------REAVLLVFANKQDLPNA----M-----SVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV  176 (180)
Q Consensus       116 ----------~~~~iiiv~nK~D~~~~----~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  176 (180)
                                -++|+++|++|||....    -     ..+-+...+ ..++-.++...+.+|+++..|++-+..+|.+.+
T Consensus       211 PL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~l-RkFCLr~GaaLiyTSvKE~KNidllyKYivhr~  289 (473)
T KOG3905|consen  211 PLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHL-RKFCLRYGAALIYTSVKETKNIDLLYKYIVHRS  289 (473)
T ss_pred             ccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHH-HHHHHHcCceeEEeecccccchHHHHHHHHHHh
Confidence                      35689999999998431    1     111122222 233345788899999999999999999999876


Q ss_pred             h
Q 030289          177 S  177 (180)
Q Consensus       177 ~  177 (180)
                      .
T Consensus       290 y  290 (473)
T KOG3905|consen  290 Y  290 (473)
T ss_pred             c
Confidence            4

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.52  E-value=9.1e-14  Score=100.34  Aligned_cols=149  Identities=16%  Similarity=0.114  Sum_probs=102.5

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC------------------------------------ccccccccceeEEEEEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE------------------------------------IVTTIPTIGFNVETVEY   57 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~------------------------------------~~~~~~t~~~~~~~~~~   57 (180)
                      +...+.+..|...-||||||-||+...                                    ..+...|+++.|.-|..
T Consensus         4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT   83 (431)
T COG2895           4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST   83 (431)
T ss_pred             ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence            446789999999999999999997521                                    01112377777888888


Q ss_pred             cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC--CH
Q 030289           58 KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM--SV  135 (180)
Q Consensus        58 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~--~~  135 (180)
                      .+.+|.+-|||||++|-.....-..-||++|+++|+.  ..+.+...-+..+.+..  .-.-+++..||+|+.+-.  ..
T Consensus        84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR--~Gvl~QTrRHs~I~sLL--GIrhvvvAVNKmDLvdy~e~~F  159 (431)
T COG2895          84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDAR--KGVLEQTRRHSFIASLL--GIRHVVVAVNKMDLVDYSEEVF  159 (431)
T ss_pred             ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecc--hhhHHHhHHHHHHHHHh--CCcEEEEEEeeecccccCHHHH
Confidence            9999999999999998777666677799999999994  44444444444443332  224588999999998632  23


Q ss_pred             hHHHhHhCCC--ccCCcceEEEEeeccCCCChH
Q 030289          136 SEVTDKLGLH--SLRQRRWYIQAACATSGQGLY  166 (180)
Q Consensus       136 ~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~i~  166 (180)
                      +++...+...  .+.-....+++.||..|+||-
T Consensus       160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         160 EAIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             HHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence            3333322110  011122379999999999975

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.51  E-value=1.7e-13  Score=101.58  Aligned_cols=154  Identities=17%  Similarity=0.065  Sum_probs=111.8

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCC------ccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289           18 RILMVGLDAAGKTTILYKLKLGE------IVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV   91 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~------~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (180)
                      .|+..|+--.|||||+..+.+..      ......|++..+......+..+.++|.||++++-......+...|.+++|+
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV   81 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV   81 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence            57888999999999999998765      112234777777777777789999999999998888888888999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHH
Q 030289           92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDW  171 (180)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  171 (180)
                      +.++.  +......+..++...  ...-.++|+||+|..++...++..+.+..... -...++|.+|+.+|+||+++.++
T Consensus        82 ~~deG--l~~qtgEhL~iLdll--gi~~giivltk~D~~d~~r~e~~i~~Il~~l~-l~~~~i~~~s~~~g~GI~~Lk~~  156 (447)
T COG3276          82 AADEG--LMAQTGEHLLILDLL--GIKNGIIVLTKADRVDEARIEQKIKQILADLS-LANAKIFKTSAKTGRGIEELKNE  156 (447)
T ss_pred             eCccC--cchhhHHHHHHHHhc--CCCceEEEEeccccccHHHHHHHHHHHHhhcc-cccccccccccccCCCHHHHHHH
Confidence            99632  222222222233322  22347999999999886554444333222211 34557899999999999999999


Q ss_pred             HHHHh
Q 030289          172 LSSNV  176 (180)
Q Consensus       172 l~~~~  176 (180)
                      |.+..
T Consensus       157 l~~L~  161 (447)
T COG3276         157 LIDLL  161 (447)
T ss_pred             HHHhh
Confidence            99887

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.51  E-value=7.4e-14  Score=106.37  Aligned_cols=158  Identities=20%  Similarity=0.198  Sum_probs=110.5

Q ss_pred             hhhcccCccEEEEEcCCCCChHHHHHHhhcC--------------------C--------------ccccccccceeEEE
Q 030289            9 KMLFARKEMRILMVGLDAAGKTTILYKLKLG--------------------E--------------IVTTIPTIGFNVET   54 (180)
Q Consensus         9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~~--------------------~--------------~~~~~~t~~~~~~~   54 (180)
                      ++..+..+.+.+++|+..+|||||+-+++..                    +              -++..-|+++....
T Consensus       170 ~q~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~  249 (603)
T KOG0458|consen  170 EQSDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTW  249 (603)
T ss_pred             cccCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEE
Confidence            4556678999999999999999999888641                    0              11112245555556


Q ss_pred             EEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCCh---hhH--HHHHHHHHHHhcccccCCCeEEEEEecCCC
Q 030289           55 VEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDR---ERI--GEAKDELHRMLSEDELREAVLLVFANKQDL  129 (180)
Q Consensus        55 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~---~~~--~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~  129 (180)
                      |......+.+.|.||+..|-.....-..++|++++|+|++..   ..|  .+....+..+++...  -..+++++||.|+
T Consensus       250 fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNKmD~  327 (603)
T KOG0458|consen  250 FESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG--ISQLIVAINKMDL  327 (603)
T ss_pred             EecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC--cceEEEEeecccc
Confidence            666778899999999998887777788899999999999742   122  222334444444432  4568999999998


Q ss_pred             CC--CCCHhHHHhHhC-----CCccCCcceEEEEeeccCCCChHHH
Q 030289          130 PN--AMSVSEVTDKLG-----LHSLRQRRWYIQAACATSGQGLYEG  168 (180)
Q Consensus       130 ~~--~~~~~~~~~~~~-----~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (180)
                      .+  +...+++...+.     ...+....+.|++||+.+|+|+...
T Consensus       328 V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  328 VSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             cCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence            65  333555554432     3344566778999999999997644

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.49  E-value=1.7e-13  Score=95.96  Aligned_cols=166  Identities=17%  Similarity=0.178  Sum_probs=98.5

Q ss_pred             hhcccCccEEEEEcCCCCChHHHHHHhhcC----Cccccccccc------------------------------eeEEEE
Q 030289           10 MLFARKEMRILMVGLDAAGKTTILYKLKLG----EIVTTIPTIG------------------------------FNVETV   55 (180)
Q Consensus        10 ~~~~~~~~~i~i~G~~~~GKStli~~l~~~----~~~~~~~t~~------------------------------~~~~~~   55 (180)
                      +...+++.-|+++|..|+||||+++||...    ..+.|....+                              ++-..+
T Consensus        13 ~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~   92 (366)
T KOG1532|consen   13 SGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIV   92 (366)
T ss_pred             cccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchh
Confidence            346678889999999999999999999631    1222211111                              110000


Q ss_pred             E-------------------EcCeEEEEEEcCCCCCC------hhh-HHhhc-cccCEEEEEEECCC---hhhHHHHHHH
Q 030289           56 E-------------------YKNVSFTVWDVGGQDKI------RPL-WRHYF-QNTHGLIFVVDSND---RERIGEAKDE  105 (180)
Q Consensus        56 ~-------------------~~~~~~~i~D~~G~~~~------~~~-~~~~~-~~~~~~i~v~d~~~---~~~~~~~~~~  105 (180)
                      .                   ....++.++|||||.+.      ... +..+. ...-+++|++|...   +-+|-.---+
T Consensus        93 TsLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlY  172 (366)
T KOG1532|consen   93 TSLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLY  172 (366)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHH
Confidence            0                   02246899999997653      111 22221 12356788888653   3333332333


Q ss_pred             HHHHhcccccCCCeEEEEEecCCCCCCCCHhHH-------HhHhCCC---cc-------------CCcceEEEEeeccCC
Q 030289          106 LHRMLSEDELREAVLLVFANKQDLPNAMSVSEV-------TDKLGLH---SL-------------RQRRWYIQAACATSG  162 (180)
Q Consensus       106 ~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~-------~~~~~~~---~~-------------~~~~~~~~~~Sa~~~  162 (180)
                      .-.++.   ..+.|++++.||+|+....-..++       .+.+...   ..             .-.++..+-||+.+|
T Consensus       173 AcSily---ktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG  249 (366)
T KOG1532|consen  173 ACSILY---KTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTG  249 (366)
T ss_pred             HHHHHH---hccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccC
Confidence            333333   368899999999999874322222       2222210   00             013567899999999


Q ss_pred             CChHHHHHHHHHHhhh
Q 030289          163 QGLYEGLDWLSSNVSA  178 (180)
Q Consensus       163 ~~i~~~~~~l~~~~~~  178 (180)
                      .|.+++|..+-+.+.+
T Consensus       250 ~G~ddf~~av~~~vdE  265 (366)
T KOG1532|consen  250 EGFDDFFTAVDESVDE  265 (366)
T ss_pred             CcHHHHHHHHHHHHHH
Confidence            9999999998877654

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.49  E-value=3.9e-13  Score=110.18  Aligned_cols=120  Identities=18%  Similarity=0.132  Sum_probs=82.8

Q ss_pred             HHHHhhhcccCccEEEEEcCCCCChHHHHHHhhcCC-c-c----------cc-------ccccceeEEEEEE--------
Q 030289            5 ISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGE-I-V----------TT-------IPTIGFNVETVEY--------   57 (180)
Q Consensus         5 ~~~~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~-~-~----------~~-------~~t~~~~~~~~~~--------   57 (180)
                      |.++.+. +++..||+|+|+.++|||||+++|+... . .          .+       ..|+......+.+        
T Consensus         9 ~~~~~~~-~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~   87 (843)
T PLN00116          9 LRRIMDK-KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLK   87 (843)
T ss_pred             HHHHhhC-ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeeccccccc
Confidence            4445444 5678899999999999999999997533 0 0          00       1122222222222        


Q ss_pred             --------cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCC
Q 030289           58 --------KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDL  129 (180)
Q Consensus        58 --------~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~  129 (180)
                              .+..+.++||||+..|.......++.+|++++|+|+...-..+. ...+....    ..++|.++++||+|.
T Consensus        88 ~~~~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t-~~~~~~~~----~~~~p~i~~iNK~D~  162 (843)
T PLN00116         88 DFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQAL----GERIRPVLTVNKMDR  162 (843)
T ss_pred             ccccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccH-HHHHHHHH----HCCCCEEEEEECCcc
Confidence                    25778999999999998888888999999999999985432222 22333332    247899999999998


Q ss_pred             C
Q 030289          130 P  130 (180)
Q Consensus       130 ~  130 (180)
                      .
T Consensus       163 ~  163 (843)
T PLN00116        163 C  163 (843)
T ss_pred             c
Confidence            7

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.47  E-value=1.1e-13  Score=96.70  Aligned_cols=149  Identities=18%  Similarity=0.222  Sum_probs=93.1

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcC------C--cccccc---------------------ccceeEEEEEE--------
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLG------E--IVTTIP---------------------TIGFNVETVEY--------   57 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~------~--~~~~~~---------------------t~~~~~~~~~~--------   57 (180)
                      +.+.|.|.|+||+|||||+++|...      +  .....|                     .-++.+...-.        
T Consensus        28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls  107 (266)
T PF03308_consen   28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS  107 (266)
T ss_dssp             -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred             CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence            6789999999999999999998531      1  000001                     11133333322        


Q ss_pred             ------------cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEe
Q 030289           58 ------------KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFAN  125 (180)
Q Consensus        58 ------------~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~n  125 (180)
                                  -++++.+++|.|--+..-.   ...-+|.+++|..+.-.+.++.++.-+.++.         -++|+|
T Consensus       108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~---I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEia---------Di~vVN  175 (266)
T PF03308_consen  108 RATRDAVRLLDAAGFDVIIIETVGVGQSEVD---IADMADTVVLVLVPGLGDEIQAIKAGIMEIA---------DIFVVN  175 (266)
T ss_dssp             HHHHHHHHHHHHTT-SEEEEEEESSSTHHHH---HHTTSSEEEEEEESSTCCCCCTB-TTHHHH----------SEEEEE
T ss_pred             HhHHHHHHHHHHcCCCEEEEeCCCCCccHHH---HHHhcCeEEEEecCCCccHHHHHhhhhhhhc---------cEEEEe
Confidence                        2478999999985543322   3355999999999887788888887777762         289999


Q ss_pred             cCCCCCCC-CHhHHHhHhCCCccCCc--ceEEEEeeccCCCChHHHHHHHHHH
Q 030289          126 KQDLPNAM-SVSEVTDKLGLHSLRQR--RWYIQAACATSGQGLYEGLDWLSSN  175 (180)
Q Consensus       126 K~D~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~  175 (180)
                      |+|..... ...++...+.+..-...  ..+++.|||.++.|++++++.+.+.
T Consensus       176 KaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~  228 (266)
T PF03308_consen  176 KADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEH  228 (266)
T ss_dssp             --SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            99955422 23344444433222222  3489999999999999999998875

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PTZ00416 elongation factor 2; Provisional

Probab=99.47  E-value=4.6e-13  Score=109.63  Aligned_cols=119  Identities=18%  Similarity=0.152  Sum_probs=81.0

Q ss_pred             HHHhhhcccCccEEEEEcCCCCChHHHHHHhhcCC--cc----------cc-------ccccceeEEEEEEc--------
Q 030289            6 SRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGE--IV----------TT-------IPTIGFNVETVEYK--------   58 (180)
Q Consensus         6 ~~~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~--~~----------~~-------~~t~~~~~~~~~~~--------   58 (180)
                      .++.+. +++.-||+|+|+.++|||||+++|+...  ..          ++       ..|+......+.+.        
T Consensus        10 ~~~~~~-~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~   88 (836)
T PTZ00416         10 REIMDN-PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDD   88 (836)
T ss_pred             HHHhhC-ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccC
Confidence            334344 3556699999999999999999998532  10          00       11222222222332        


Q ss_pred             --CeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCC
Q 030289           59 --NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP  130 (180)
Q Consensus        59 --~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~  130 (180)
                        +..+.++||||+..+.......++.+|++++|+|+.+.-..+ ....+.....    .++|+++++||+|+.
T Consensus        89 ~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~-t~~~~~~~~~----~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         89 KQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQ-TETVLRQALQ----ERIRPVLFINKVDRA  157 (836)
T ss_pred             CCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCcc-HHHHHHHHHH----cCCCEEEEEEChhhh
Confidence              567999999999999888888999999999999987642222 2233333322    357999999999986

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.46  E-value=1.5e-12  Score=99.54  Aligned_cols=161  Identities=14%  Similarity=0.146  Sum_probs=106.9

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEE------cCeEEEEEEcCCCCCChhhHHhhcccc----
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY------KNVSFTVWDVGGQDKIRPLWRHYFQNT----   84 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~------~~~~~~i~D~~G~~~~~~~~~~~~~~~----   84 (180)
                      ..-+|+|+|..++|||||+.+|.+.+.  ..++.+..|.-+++      +...+.+|-..|...+..+....+...    
T Consensus        24 ~~k~vlvlG~~~~GKttli~~L~~~e~--~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~  101 (472)
T PF05783_consen   24 SEKSVLVLGDKGSGKTTLIARLQGIED--PKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPN  101 (472)
T ss_pred             CCceEEEEeCCCCchHHHHHHhhccCC--CCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccc
Confidence            457899999999999999999976553  34555555544444      224689999999877777777666643    


Q ss_pred             CEEEEEEECCChhhH-HHHHHHHH----------------------------HHhccc--c-------------------
Q 030289           85 HGLIFVVDSNDRERI-GEAKDELH----------------------------RMLSED--E-------------------  114 (180)
Q Consensus        85 ~~~i~v~d~~~~~~~-~~~~~~~~----------------------------~~~~~~--~-------------------  114 (180)
                      -.+++|+|.+.|..+ +.+..|+.                            .+....  .                   
T Consensus       102 t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~  181 (472)
T PF05783_consen  102 TLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDES  181 (472)
T ss_pred             eEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccccc
Confidence            358999999876433 22222211                            110000  0                   


Q ss_pred             ------------cCCCeEEEEEecCCCCCC---------CCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHH
Q 030289          115 ------------LREAVLLVFANKQDLPNA---------MSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLS  173 (180)
Q Consensus       115 ------------~~~~~iiiv~nK~D~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  173 (180)
                                  .-++|++||++|+|....         ...+-+.+.+ ..++-.+++.+|.||++...|++.++.+|.
T Consensus       182 ~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~L-R~~cL~yGAsL~yts~~~~~n~~~L~~yi~  260 (472)
T PF05783_consen  182 VLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYL-RTFCLKYGASLIYTSVKEEKNLDLLYKYIL  260 (472)
T ss_pred             ccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHH-HHHHHhcCCeEEEeeccccccHHHHHHHHH
Confidence                        014799999999996431         1122222222 233446788999999999999999999998


Q ss_pred             HHhhh
Q 030289          174 SNVSA  178 (180)
Q Consensus       174 ~~~~~  178 (180)
                      +.+..
T Consensus       261 h~l~~  265 (472)
T PF05783_consen  261 HRLYG  265 (472)
T ss_pred             HHhcc
Confidence            88764

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=99.45  E-value=4.2e-13  Score=101.67  Aligned_cols=130  Identities=25%  Similarity=0.432  Sum_probs=98.3

Q ss_pred             ccceeEEEEEE-cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCCh----------hhHHHHHHHHHHHhccccc
Q 030289           47 TIGFNVETVEY-KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDR----------ERIGEAKDELHRMLSEDEL  115 (180)
Q Consensus        47 t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~  115 (180)
                      |.|+....+.+ .+..++++|++|+..-+.-|..++.++++++||+++++.          ..+.+....+..+++....
T Consensus       222 T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~  301 (389)
T PF00503_consen  222 TTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWF  301 (389)
T ss_dssp             -SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGG
T ss_pred             CCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCccc
Confidence            67777888888 999999999999988889999999999999999997632          4577888889999998888


Q ss_pred             CCCeEEEEEecCCCCC-----C---------------CCHhHHHhH-----hCCCccCC--cceEEEEeeccCCCChHHH
Q 030289          116 REAVLLVFANKQDLPN-----A---------------MSVSEVTDK-----LGLHSLRQ--RRWYIQAACATSGQGLYEG  168 (180)
Q Consensus       116 ~~~~iiiv~nK~D~~~-----~---------------~~~~~~~~~-----~~~~~~~~--~~~~~~~~Sa~~~~~i~~~  168 (180)
                      .+.|+++++||.|+..     .               .+.+...+.     ........  +.+.++.|+|.+..++..+
T Consensus       302 ~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v  381 (389)
T PF00503_consen  302 KNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKV  381 (389)
T ss_dssp             TTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHH
T ss_pred             ccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHH
Confidence            8999999999999532     1               112222111     11111112  6678899999999999999


Q ss_pred             HHHHHHHh
Q 030289          169 LDWLSSNV  176 (180)
Q Consensus       169 ~~~l~~~~  176 (180)
                      |..+.+.+
T Consensus       382 ~~~v~~~i  389 (389)
T PF00503_consen  382 FNAVKDII  389 (389)
T ss_dssp             HHHHHHHH
T ss_pred             HHHhcCcC
Confidence            99887653

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.44  E-value=2.8e-13  Score=86.47  Aligned_cols=113  Identities=14%  Similarity=0.119  Sum_probs=78.2

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCCccc-cc-cccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECC
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGEIVT-TI-PTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSN   94 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~~~~-~~-~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~   94 (180)
                      +|++++|..|+|||+|+.++....+.. +. +|.+                       +......+.+.++.++.|++.+
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~-----------------------~~~~~~~~~~s~~~~~~v~~~~   57 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG-----------------------IDVYDPTSYESFDVVLQCWRVD   57 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh-----------------------hhhccccccCCCCEEEEEEEcc
Confidence            589999999999999999997666432 22 3333                       3333455677889999999999


Q ss_pred             ChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChH
Q 030289           95 DRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLY  166 (180)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  166 (180)
                      +.++++..  |...+... ...+.|.++++||.|+.++...   ...        ....++++|++++.|+.
T Consensus        58 ~~~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~~~~~---~~~--------~~~~~~~~s~~~~~~~~  115 (124)
T smart00010       58 DRDSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEEERQV---ATE--------EGLEFAETSAKTPEEGE  115 (124)
T ss_pred             CHHHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHhhCcC---CHH--------HHHHHHHHhCCCcchhh
Confidence            88887655  65555433 2357889999999998542211   111        11246788999999874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.43  E-value=3.3e-13  Score=92.19  Aligned_cols=157  Identities=20%  Similarity=0.265  Sum_probs=105.0

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC----ccccccccceeEEEEEE-cCeEEEEEEcCCCCCC-----hhhHHhhccccC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE----IVTTIPTIGFNVETVEY-KNVSFTVWDVGGQDKI-----RPLWRHYFQNTH   85 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~----~~~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~-----~~~~~~~~~~~~   85 (180)
                      .-||+++|.+|+||||+=..++.+-    .....+|+++....+++ ++..+.+||++|++.+     .......+++.+
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~   83 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQ   83 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheehe
Confidence            5689999999999999876665433    45556788999988888 5589999999998843     223456677899


Q ss_pred             EEEEEEECCChh---hHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHh---HhCCCccCCcceEEEEeec
Q 030289           86 GLIFVVDSNDRE---RIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTD---KLGLHSLRQRRWYIQAACA  159 (180)
Q Consensus        86 ~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~Sa  159 (180)
                      ++++|||++..+   .+....+.++.++.+  .+...+.+..+|.|+......+++.+   ..-.......+..+|++|.
T Consensus        84 vli~vFDves~e~~~D~~~yqk~Le~ll~~--SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi  161 (295)
T KOG3886|consen   84 VLIYVFDVESREMEKDFHYYQKCLEALLQN--SPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI  161 (295)
T ss_pred             eeeeeeeccchhhhhhHHHHHHHHHHHHhc--CCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence            999999998653   333344455555544  35667889999999987544333221   1111112234567888887


Q ss_pred             cCCCChHHHHHHHHHH
Q 030289          160 TSGQGLYEGLDWLSSN  175 (180)
Q Consensus       160 ~~~~~i~~~~~~l~~~  175 (180)
                      .+. .+-.+|..+...
T Consensus       162 wDe-tl~KAWS~iv~~  176 (295)
T KOG3886|consen  162 WDE-TLYKAWSSIVYN  176 (295)
T ss_pred             hhH-HHHHHHHHHHHh
Confidence            763 344445544433

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.43  E-value=4.8e-12  Score=93.88  Aligned_cols=113  Identities=19%  Similarity=0.239  Sum_probs=84.5

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC--cccc-----------------------ccccceeEEEEEEcCeEEEEEEcC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE--IVTT-----------------------IPTIGFNVETVEYKNVSFTVWDVG   68 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~--~~~~-----------------------~~t~~~~~~~~~~~~~~~~i~D~~   68 (180)
                      .++-..+||.+|.+|||||.++|+...  +...                       ...+.....++.+.+..+.+.|||
T Consensus        10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP   89 (528)
T COG4108          10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP   89 (528)
T ss_pred             hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence            345567899999999999999986311  1110                       112223456677799999999999


Q ss_pred             CCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289           69 GQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN  131 (180)
Q Consensus        69 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~  131 (180)
                      ||+.+..-+-+-+.-+|.++.|+|+.  ..++.....+..+++.   +++||+-++||.|-..
T Consensus        90 GHeDFSEDTYRtLtAvDsAvMVIDaA--KGiE~qT~KLfeVcrl---R~iPI~TFiNKlDR~~  147 (528)
T COG4108          90 GHEDFSEDTYRTLTAVDSAVMVIDAA--KGIEPQTLKLFEVCRL---RDIPIFTFINKLDREG  147 (528)
T ss_pred             CccccchhHHHHHHhhheeeEEEecc--cCccHHHHHHHHHHhh---cCCceEEEeecccccc
Confidence            99999877777788899999999986  4455555555566654   7899999999999654

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.43  E-value=3.7e-13  Score=99.66  Aligned_cols=160  Identities=14%  Similarity=0.145  Sum_probs=78.5

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhhcCCcc-ccccccce-----eEEEEEE-cCeEEEEEEcCCCCCChhhHHhhc---
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGF-----NVETVEY-KNVSFTVWDVGGQDKIRPLWRHYF---   81 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~-----~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~---   81 (180)
                      ....+++|+|+|.+|+|||||||+|.+-... +..+.+|+     ....+.. ..-.+.+||.||..........|+   
T Consensus        31 ~~~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~  110 (376)
T PF05049_consen   31 IDNAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEV  110 (376)
T ss_dssp             HHH--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHT
T ss_pred             hhcCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHc
Confidence            4567899999999999999999999763311 11122211     1122222 223699999999543333333443   


Q ss_pred             --cccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCC--C-----CCC--CHhHHHhHhC---CCcc
Q 030289           82 --QNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDL--P-----NAM--SVSEVTDKLG---LHSL  147 (180)
Q Consensus        82 --~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~--~-----~~~--~~~~~~~~~~---~~~~  147 (180)
                        ...|.+|++.+-    .+....-++..-+..   .+.|+.+|-+|+|.  .     .+.  ..++..+..+   ...+
T Consensus       111 ~~~~yD~fiii~s~----rf~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L  183 (376)
T PF05049_consen  111 KFYRYDFFIIISSE----RFTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENL  183 (376)
T ss_dssp             TGGG-SEEEEEESS----S--HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHH
T ss_pred             cccccCEEEEEeCC----CCchhhHHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHH
Confidence              467887777653    243444333333333   47889999999994  1     111  1112211111   1111


Q ss_pred             CC---cceEEEEeeccCCC--ChHHHHHHHHHHhhh
Q 030289          148 RQ---RRWYIQAACATSGQ--GLYEGLDWLSSNVSA  178 (180)
Q Consensus       148 ~~---~~~~~~~~Sa~~~~--~i~~~~~~l~~~~~~  178 (180)
                      +.   ...++|.+|+.+-.  +...+.+.+.+.+..
T Consensus       184 ~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~  219 (376)
T PF05049_consen  184 QKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPA  219 (376)
T ss_dssp             HCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-G
T ss_pred             HHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHH
Confidence            11   23479999988754  466777777766554

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.41  E-value=9.8e-12  Score=91.04  Aligned_cols=106  Identities=15%  Similarity=0.080  Sum_probs=64.8

Q ss_pred             CeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHH
Q 030289           59 NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEV  138 (180)
Q Consensus        59 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~  138 (180)
                      ++++.++||+|.-..   .......+|.++++......+.+....   ..+      .++|.++++||+|+.........
T Consensus       126 g~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~~~~~el~~~~---~~l------~~~~~ivv~NK~Dl~~~~~~~~~  193 (300)
T TIGR00750       126 GYDVIIVETVGVGQS---EVDIANMADTFVVVTIPGTGDDLQGIK---AGL------MEIADIYVVNKADGEGATNVTIA  193 (300)
T ss_pred             CCCEEEEeCCCCchh---hhHHHHhhceEEEEecCCccHHHHHHH---HHH------hhhccEEEEEcccccchhHHHHH
Confidence            578999999995422   223456678888886544333333322   222      24567999999998764332211


Q ss_pred             HhH----hCC--CccCCcceEEEEeeccCCCChHHHHHHHHHHh
Q 030289          139 TDK----LGL--HSLRQRRWYIQAACATSGQGLYEGLDWLSSNV  176 (180)
Q Consensus       139 ~~~----~~~--~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  176 (180)
                      ...    +..  ........+++++|++++.|++++++++.+.+
T Consensus       194 ~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~  237 (300)
T TIGR00750       194 RLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK  237 (300)
T ss_pred             HHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence            111    111  10011123699999999999999999998864

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.41  E-value=1.4e-12  Score=105.73  Aligned_cols=112  Identities=21%  Similarity=0.156  Sum_probs=77.5

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC--cc----------cc-------ccccceeEEEEEE----cCeEEEEEEcCCC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE--IV----------TT-------IPTIGFNVETVEY----KNVSFTVWDVGGQ   70 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~--~~----------~~-------~~t~~~~~~~~~~----~~~~~~i~D~~G~   70 (180)
                      .+.-+|+++|+.++|||||+++|+...  ..          ++       ..|+......+.+    ++..+.++||||+
T Consensus        18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~   97 (731)
T PRK07560         18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH   97 (731)
T ss_pred             hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence            556789999999999999999997532  11          00       1133333223322    4788999999999


Q ss_pred             CCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCC
Q 030289           71 DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP  130 (180)
Q Consensus        71 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~  130 (180)
                      ..+.......++.+|++++|+|+...-.. .....+.....    .+.|.++++||+|..
T Consensus        98 ~df~~~~~~~l~~~D~avlVvda~~g~~~-~t~~~~~~~~~----~~~~~iv~iNK~D~~  152 (731)
T PRK07560         98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMP-QTETVLRQALR----ERVKPVLFINKVDRL  152 (731)
T ss_pred             cChHHHHHHHHHhcCEEEEEEECCCCCCc-cHHHHHHHHHH----cCCCeEEEEECchhh
Confidence            99988888899999999999998754221 22222332222    245779999999975

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.41  E-value=3.5e-12  Score=90.62  Aligned_cols=107  Identities=15%  Similarity=0.155  Sum_probs=76.0

Q ss_pred             CeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC-CHhH
Q 030289           59 NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM-SVSE  137 (180)
Q Consensus        59 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~-~~~~  137 (180)
                      ++.+.|++|.|--+..-.   ...-+|.++++.-+.-.+.++.++.-+.++.         -++|+||.|..... ...+
T Consensus       143 G~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~GD~~Q~iK~GimEia---------Di~vINKaD~~~A~~a~r~  210 (323)
T COG1703         143 GYDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAGDDLQGIKAGIMEIA---------DIIVINKADRKGAEKAARE  210 (323)
T ss_pred             CCCEEEEEecCCCcchhH---HhhhcceEEEEecCCCCcHHHHHHhhhhhhh---------heeeEeccChhhHHHHHHH
Confidence            468999999986544433   2244899999988877888888888877773         28999999965432 1223


Q ss_pred             HHhHhCCCc--cCCcc--eEEEEeeccCCCChHHHHHHHHHHhh
Q 030289          138 VTDKLGLHS--LRQRR--WYIQAACATSGQGLYEGLDWLSSNVS  177 (180)
Q Consensus       138 ~~~~~~~~~--~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~~  177 (180)
                      +...+.+..  +...+  .+++.|||.+|+|++++|+.+.+...
T Consensus       211 l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~  254 (323)
T COG1703         211 LRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK  254 (323)
T ss_pred             HHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence            344444332  33333  38999999999999999999987653

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.40  E-value=7.3e-12  Score=86.39  Aligned_cols=162  Identities=19%  Similarity=0.217  Sum_probs=108.8

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCCccc----cccccceeEEEEEEcCeEEEEEEcCCCCCChh---hHHhhccccCEEE
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVEYKNVSFTVWDVGGQDKIRP---LWRHYFQNTHGLI   88 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~~~~i   88 (180)
                      +.+|+++|...+||||+..-.+.+..+.    ..+|..+....+...-+.+.+||.|||-.+-.   -....++++.+.+
T Consensus        27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi  106 (347)
T KOG3887|consen   27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI  106 (347)
T ss_pred             CceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence            3669999999999999987777655221    12344444444444557899999999876522   2667889999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhc-ccccCCCeEEEEEecCCCCCCCC-------Hh-HHHhHhCCCccCCcceEEEEeec
Q 030289           89 FVVDSNDRERIGEAKDELHRMLS-EDELREAVLLVFANKQDLPNAMS-------VS-EVTDKLGLHSLRQRRWYIQAACA  159 (180)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~iiiv~nK~D~~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~Sa  159 (180)
                      +|+|+.+.. .+.+.....-+.+ ..-.+++.+-+.++|.|...+.-       .. ...+.+......+.++.|+.+|-
T Consensus       107 fvIDaQddy-~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSI  185 (347)
T KOG3887|consen  107 FVIDAQDDY-MEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSI  185 (347)
T ss_pred             EEEechHHH-HHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeee
Confidence            999997542 2333333333322 23468899999999999766321       11 11223333344566788999999


Q ss_pred             cCCCChHHHHHHHHHHhhhc
Q 030289          160 TSGQGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       160 ~~~~~i~~~~~~l~~~~~~~  179 (180)
                      ++. +|-|+|..+++.+..+
T Consensus       186 yDH-SIfEAFSkvVQkLipq  204 (347)
T KOG3887|consen  186 YDH-SIFEAFSKVVQKLIPQ  204 (347)
T ss_pred             cch-HHHHHHHHHHHHHhhh
Confidence            986 6999999999887643

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.39  E-value=2.3e-12  Score=93.11  Aligned_cols=117  Identities=19%  Similarity=0.326  Sum_probs=68.0

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCCccccc-----------cccceeEEEEEE----cCeEEEEEEcCCCCCC---hhh-
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGEIVTTI-----------PTIGFNVETVEY----KNVSFTVWDVGGQDKI---RPL-   76 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~~~~~~-----------~t~~~~~~~~~~----~~~~~~i~D~~G~~~~---~~~-   76 (180)
                      +|+|+|+|.+|+|||||||.|++.......           .+..+....+..    ..+.+.++||||-...   ... 
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~   83 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW   83 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence            689999999999999999999986622111           122333333333    3467899999992211   000 


Q ss_pred             ----------HHhhc-------------cccCEEEEEEECCChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCC
Q 030289           77 ----------WRHYF-------------QNTHGLIFVVDSNDRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNA  132 (180)
Q Consensus        77 ----------~~~~~-------------~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~  132 (180)
                                ...++             .+.|+++|+++++. ..+..++ ..+..+ .    ..+++|.|+.|+|...+
T Consensus        84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~-~~L~~~Di~~mk~L-s----~~vNvIPvIaKaD~lt~  157 (281)
T PF00735_consen   84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTG-HGLKPLDIEFMKRL-S----KRVNVIPVIAKADTLTP  157 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTS-SSS-HHHHHHHHHH-T----TTSEEEEEESTGGGS-H
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCC-ccchHHHHHHHHHh-c----ccccEEeEEecccccCH
Confidence                      01111             14689999999864 2233333 344444 2    35779999999998875


Q ss_pred             CCHhHH
Q 030289          133 MSVSEV  138 (180)
Q Consensus       133 ~~~~~~  138 (180)
                      .++..+
T Consensus       158 ~el~~~  163 (281)
T PF00735_consen  158 EELQAF  163 (281)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            544443

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.38  E-value=1e-11  Score=83.57  Aligned_cols=63  Identities=19%  Similarity=0.263  Sum_probs=42.7

Q ss_pred             EEEEEEcCCCC----CChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecC
Q 030289           61 SFTVWDVGGQD----KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQ  127 (180)
Q Consensus        61 ~~~i~D~~G~~----~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~  127 (180)
                      .+.++||||-.    .....+..++..+|++++|.++++..+-.....+.... ..   .....++|.||.
T Consensus       102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~-~~---~~~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQML-DP---DKSRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHH-TT---TCSSEEEEEE-G
T ss_pred             ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHh-cC---CCCeEEEEEcCC
Confidence            58999999942    23466888889999999999998755444444443333 32   233389999984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.38  E-value=3.3e-12  Score=88.85  Aligned_cols=147  Identities=16%  Similarity=0.152  Sum_probs=83.2

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC-c-cc-----ccc----------ccceeEEEEE--------------------
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE-I-VT-----TIP----------TIGFNVETVE--------------------   56 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~-~~-----~~~----------t~~~~~~~~~--------------------   56 (180)
                      .....|+|+|+.|+|||||++++.... . ..     ...          ..+.....+.                    
T Consensus        20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~   99 (207)
T TIGR00073        20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLP   99 (207)
T ss_pred             cCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhc
Confidence            446778899999999999999997431 0 00     000          0000100000                    


Q ss_pred             EcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--
Q 030289           57 YKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--  134 (180)
Q Consensus        57 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--  134 (180)
                      ..+..+.++++.|.-....   .+....+..+.|+|+.+.+...  ... .      .....|.++++||+|+.+...  
T Consensus       100 ~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~--~~~-~------~~~~~a~iiv~NK~Dl~~~~~~~  167 (207)
T TIGR00073       100 LDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKP--LKY-P------GMFKEADLIVINKADLAEAVGFD  167 (207)
T ss_pred             cCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchh--hhh-H------hHHhhCCEEEEEHHHccccchhh
Confidence            0134677888877211111   1112345556777776543211  111 0      112456799999999975322  


Q ss_pred             HhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHH
Q 030289          135 VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSN  175 (180)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  175 (180)
                      ..+....+...   ....+++++|++++.|++++++++.+.
T Consensus       168 ~~~~~~~l~~~---~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       168 VEKMKADAKKI---NPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             HHHHHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            33333322211   134689999999999999999999875

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.37  E-value=3.1e-12  Score=90.94  Aligned_cols=96  Identities=18%  Similarity=0.195  Sum_probs=74.4

Q ss_pred             CCCChhhHHhhccccCEEEEEEECCChh-hHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHh-HHHhHhCCCcc
Q 030289           70 QDKIRPLWRHYFQNTHGLIFVVDSNDRE-RIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVS-EVTDKLGLHSL  147 (180)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~-~~~~~~~~~~~  147 (180)
                      .+++..+.+.++.++|++++|+|+.++. ++..+..|+.....    .++|+++|+||+|+.++.... +....+     
T Consensus        23 ~eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~-----   93 (245)
T TIGR00157        23 AERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIY-----   93 (245)
T ss_pred             ecccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHH-----
Confidence            3677777888999999999999999877 88899998875532    578999999999997543322 222222     


Q ss_pred             CCcceEEEEeeccCCCChHHHHHHHHH
Q 030289          148 RQRRWYIQAACATSGQGLYEGLDWLSS  174 (180)
Q Consensus       148 ~~~~~~~~~~Sa~~~~~i~~~~~~l~~  174 (180)
                      ...+.+++++||++|.|++++|+.+.+
T Consensus        94 ~~~g~~v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157        94 RNIGYQVLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             HHCCCeEEEEecCCchhHHHHHhhhcC
Confidence            234568999999999999999998764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.37  E-value=2.4e-12  Score=92.06  Aligned_cols=160  Identities=15%  Similarity=0.083  Sum_probs=103.8

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCccc------cccccceeEEE--------------EEE------------cCeE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEIVT------TIPTIGFNVET--------------VEY------------KNVS   61 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~------~~~t~~~~~~~--------------~~~------------~~~~   61 (180)
                      +...||.++|+...|||||..+|++--...      ..-|+...|..              +..            --..
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~   87 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR   87 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence            568999999999999999999998632110      01111111110              000            0146


Q ss_pred             EEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC----HhH
Q 030289           62 FTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS----VSE  137 (180)
Q Consensus        62 ~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~----~~~  137 (180)
                      ++++|.|||+-+-.....-..-.|++++|++++.+.......+.+..+ ...  .-..++++-||.|+.+...    .++
T Consensus        88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Al-eIi--gik~iiIvQNKIDlV~~E~AlE~y~q  164 (415)
T COG5257          88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMAL-EII--GIKNIIIVQNKIDLVSRERALENYEQ  164 (415)
T ss_pred             EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHH-hhh--ccceEEEEecccceecHHHHHHHHHH
Confidence            899999999755544444444469999999999876655555554443 221  2245899999999987432    223


Q ss_pred             HHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHHhhh
Q 030289          138 VTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  178 (180)
                      +.+...-.  -..+.|++++||..+.||+-++++|.+.+..
T Consensus       165 Ik~FvkGt--~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt  203 (415)
T COG5257         165 IKEFVKGT--VAENAPIIPISAQHKANIDALIEAIEKYIPT  203 (415)
T ss_pred             HHHHhccc--ccCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence            33322211  1345699999999999999999999987753

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.36  E-value=2.1e-11  Score=88.23  Aligned_cols=158  Identities=20%  Similarity=0.174  Sum_probs=96.3

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC----------ccccccccceeEEEEEE---------cCeEEEEEEcCCCCCCh
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE----------IVTTIPTIGFNVETVEY---------KNVSFTVWDVGGQDKIR   74 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~----------~~~~~~t~~~~~~~~~~---------~~~~~~i~D~~G~~~~~   74 (180)
                      ...+|+.++|+..+|||||..+|..-.          ..+...|.+..+..+..         +..++.++|+||+...-
T Consensus         5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI   84 (522)
T KOG0461|consen    5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI   84 (522)
T ss_pred             CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence            446999999999999999999996422          22223355555555544         45688999999986443


Q ss_pred             hhHHhhccccCEEEEEEECCChhhHHHHHH-HHHHHhcccccCCCeEEEEEecCCCCCCCC----HhHHHhHhC--CCcc
Q 030289           75 PLWRHYFQNTHGLIFVVDSNDRERIGEAKD-ELHRMLSEDELREAVLLVFANKQDLPNAMS----VSEVTDKLG--LHSL  147 (180)
Q Consensus        75 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~----~~~~~~~~~--~~~~  147 (180)
                      .......+-.|..++|+|+.....-+...- .+-+++      -...++|+||.|...+..    .++......  +...
T Consensus        85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~------c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t  158 (522)
T KOG0461|consen   85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL------CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLEST  158 (522)
T ss_pred             HHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh------ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhc
Confidence            333333344588999999974321111111 111221      123688889998765422    222222211  1111


Q ss_pred             -CCcceEEEEeeccCC----CChHHHHHHHHHHhh
Q 030289          148 -RQRRWYIQAACATSG----QGLYEGLDWLSSNVS  177 (180)
Q Consensus       148 -~~~~~~~~~~Sa~~~----~~i~~~~~~l~~~~~  177 (180)
                       ...+.|++++|+..|    +.|.|+.+.+.+++-
T Consensus       159 ~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if  193 (522)
T KOG0461|consen  159 GFDGNSPIVEVSAADGYFKEEMIQELKEALESRIF  193 (522)
T ss_pred             CcCCCCceeEEecCCCccchhHHHHHHHHHHHhhc
Confidence             233579999999999    667777776666553

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.28  E-value=2e-11  Score=81.83  Aligned_cols=144  Identities=19%  Similarity=0.101  Sum_probs=82.5

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCCcccccc---c---------------cceeEEEEEE---------------------
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGEIVTTIP---T---------------IGFNVETVEY---------------------   57 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~---t---------------~~~~~~~~~~---------------------   57 (180)
                      +.|.|.|++|||||+|+.+++..-..++..   +               .+.....+..                     
T Consensus        14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~~   93 (202)
T COG0378          14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVLD   93 (202)
T ss_pred             EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhhc
Confidence            789999999999999999886422111100   0               1111111111                     


Q ss_pred             -cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhc-ccccCCCeEEEEEecCCCCCCCC-
Q 030289           58 -KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLS-EDELREAVLLVFANKQDLPNAMS-  134 (180)
Q Consensus        58 -~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~iiiv~nK~D~~~~~~-  134 (180)
                       .+..+.+++..|.   ....-.+.-..+.-++|+|++..+.  .       ... .+.... .-++|+||.|+.+... 
T Consensus        94 ~~~~Dll~iEs~GN---L~~~~sp~L~d~~~v~VidvteGe~--~-------P~K~gP~i~~-aDllVInK~DLa~~v~~  160 (202)
T COG0378          94 FPDLDLLFIESVGN---LVCPFSPDLGDHLRVVVIDVTEGED--I-------PRKGGPGIFK-ADLLVINKTDLAPYVGA  160 (202)
T ss_pred             CCcCCEEEEecCcc---eecccCcchhhceEEEEEECCCCCC--C-------cccCCCceeE-eeEEEEehHHhHHHhCc
Confidence             1135666676661   1111122223347889999875432  0       011 111112 4589999999987443 


Q ss_pred             -HhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHHh
Q 030289          135 -VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV  176 (180)
Q Consensus       135 -~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  176 (180)
                       ++.....-...   ..+.+|+++|.++|+|++++++++....
T Consensus       161 dlevm~~da~~~---np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         161 DLEVMARDAKEV---NPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             cHHHHHHHHHHh---CCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence             33332221111   2356899999999999999999987654

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.27  E-value=3e-10  Score=87.10  Aligned_cols=155  Identities=17%  Similarity=0.153  Sum_probs=104.4

Q ss_pred             hhhcccCccEEEEEcCCCCChHHHHHHhhcCCccc-cccccc----eeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccc
Q 030289            9 KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG----FNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQN   83 (180)
Q Consensus         9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~-~~~t~~----~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   83 (180)
                      ++...++-|.+.++|+.++|||.+++.|.++.... +..+..    ++...+..+...+.+-|.+-. ....+...- ..
T Consensus       418 ~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~  495 (625)
T KOG1707|consen  418 KKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AA  495 (625)
T ss_pred             cccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ce
Confidence            55667889999999999999999999999876333 222332    222222234445566666543 222222212 66


Q ss_pred             cCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC-----CCHhHHHhHhCCCccCCcceEEEEee
Q 030289           84 THGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA-----MSVSEVTDKLGLHSLRQRRWYIQAAC  158 (180)
Q Consensus        84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~S  158 (180)
                      ||++.++||++++.+++.....+......   .+.|+++|++|+|+.+.     ...++++.++++...       +..|
T Consensus       496 cDv~~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P-------~~~S  565 (625)
T KOG1707|consen  496 CDVACLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPP-------IHIS  565 (625)
T ss_pred             eeeEEEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCC-------eeec
Confidence            99999999999999999988877765433   68999999999998663     235667777666532       4455


Q ss_pred             ccCCCChHHHHHHHHHHh
Q 030289          159 ATSGQGLYEGLDWLSSNV  176 (180)
Q Consensus       159 a~~~~~i~~~~~~l~~~~  176 (180)
                      ..+..+ .++|..|..+.
T Consensus       566 ~~~~~s-~~lf~kL~~~A  582 (625)
T KOG1707|consen  566 SKTLSS-NELFIKLATMA  582 (625)
T ss_pred             cCCCCC-chHHHHHHHhh
Confidence            553333 78888877654

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.27  E-value=3.7e-11  Score=94.25  Aligned_cols=156  Identities=21%  Similarity=0.213  Sum_probs=101.2

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCccc--cc---cccceeEEEEE----------------EcCeEEEEEEcCCCCC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEIVT--TI---PTIGFNVETVE----------------YKNVSFTVWDVGGQDK   72 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~--~~---~t~~~~~~~~~----------------~~~~~~~i~D~~G~~~   72 (180)
                      -+..-|||+|+..+|||-|+..+.+.....  ..   ..+|..+....                ++---+.++||||++.
T Consensus       473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs  552 (1064)
T KOG1144|consen  473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES  552 (1064)
T ss_pred             cCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence            355679999999999999998887543111  11   12222222211                1223578999999999


Q ss_pred             ChhhHHhhccccCEEEEEEECCCh---hhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC-----C-CCH--------
Q 030289           73 IRPLWRHYFQNTHGLIFVVDSNDR---ERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN-----A-MSV--------  135 (180)
Q Consensus        73 ~~~~~~~~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~-----~-~~~--------  135 (180)
                      |..++.+....||.+|+|+|+.+.   .+++.+.     +++   .++.|+|+.+||.|-.-     + ...        
T Consensus       553 FtnlRsrgsslC~~aIlvvdImhGlepqtiESi~-----lLR---~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~  624 (1064)
T KOG1144|consen  553 FTNLRSRGSSLCDLAILVVDIMHGLEPQTIESIN-----LLR---MRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQK  624 (1064)
T ss_pred             hhhhhhccccccceEEEEeehhccCCcchhHHHH-----HHH---hcCCCeEEeehhhhhhcccccCCCchHHHHHHHhh
Confidence            999999999999999999999642   2222221     122   25789999999999431     1 010        


Q ss_pred             -----------hHHHhHhCCCcc------CC----cceEEEEeeccCCCChHHHHHHHHHHhh
Q 030289          136 -----------SEVTDKLGLHSL------RQ----RRWYIQAACATSGQGLYEGLDWLSSNVS  177 (180)
Q Consensus       136 -----------~~~~~~~~~~~~------~~----~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  177 (180)
                                 ..+...+..+.+      .+    .-+.++++||.+|+||-+++.+|++...
T Consensus       625 k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ  687 (1064)
T KOG1144|consen  625 KDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ  687 (1064)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence                       111111111111      11    1347899999999999999999988754

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.27  E-value=1.3e-11  Score=87.47  Aligned_cols=159  Identities=19%  Similarity=0.145  Sum_probs=100.4

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcC-------C----------ccc--cccccceeEEEEEEcCeEEEEEEcCCCCCC
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLG-------E----------IVT--TIPTIGFNVETVEYKNVSFTVWDVGGQDKI   73 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~-------~----------~~~--~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~   73 (180)
                      ...+.||..+|+...|||||..+++..       .          +.+  ...|+......+...+..+.-+|+||+-.|
T Consensus         9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY   88 (394)
T COG0050           9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence            457899999999999999999877521       0          111  122566666677778899999999999988


Q ss_pred             hhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCC-eEEEEEecCCCCCCCCHhHHHh-----HhCCCcc
Q 030289           74 RPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREA-VLLVFANKQDLPNAMSVSEVTD-----KLGLHSL  147 (180)
Q Consensus        74 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiiv~nK~D~~~~~~~~~~~~-----~~~~~~~  147 (180)
                      -+....-.-+.|++|+|+++.+..-- +...   .++-.. .-++ .+++++||+|+.++.++-++..     .+..-.+
T Consensus        89 vKNMItgAaqmDgAILVVsA~dGpmP-qTrE---HiLlar-qvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f  163 (394)
T COG0050          89 VKNMITGAAQMDGAILVVAATDGPMP-QTRE---HILLAR-QVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGF  163 (394)
T ss_pred             HHHHhhhHHhcCccEEEEEcCCCCCC-cchh---hhhhhh-hcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCC
Confidence            77766677789999999999863211 1111   111111 1234 5778889999998655433322     2222223


Q ss_pred             CCcceEEEEeeccCCC--------ChHHHHHHHHHHh
Q 030289          148 RQRRWYIQAACATSGQ--------GLYEGLDWLSSNV  176 (180)
Q Consensus       148 ~~~~~~~~~~Sa~~~~--------~i~~~~~~l~~~~  176 (180)
                      ..-..|++.-|+..--        .|.++++.+-+.+
T Consensus       164 ~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yi  200 (394)
T COG0050         164 PGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYI  200 (394)
T ss_pred             CCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcC
Confidence            3345578777765321        2455555554443

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.27  E-value=1.1e-10  Score=91.47  Aligned_cols=115  Identities=13%  Similarity=0.113  Sum_probs=71.1

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCC-cccc---ccccceeEEEEEEcCeEEEEEEcCCCCCCh-------hh---HHhh
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGE-IVTT---IPTIGFNVETVEYKNVSFTVWDVGGQDKIR-------PL---WRHY   80 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~-~~~~---~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~---~~~~   80 (180)
                      -.++|+++|.+|+||||++|++++.. +...   ..|...........+..+.++||||-....       ..   ...+
T Consensus       117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~  196 (763)
T TIGR00993       117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKF  196 (763)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHH
Confidence            35689999999999999999999876 2211   123333222333467899999999954321       11   2223


Q ss_pred             cc--ccCEEEEEEECCChhhH-H--HHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289           81 FQ--NTHGLIFVVDSNDRERI-G--EAKDELHRMLSEDELREAVLLVFANKQDLPN  131 (180)
Q Consensus        81 ~~--~~~~~i~v~d~~~~~~~-~--~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~  131 (180)
                      +.  ..|++++|..+.....- +  ...+.+..++....  -.-.|||+|+.|..+
T Consensus       197 Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~I--wk~tIVVFThgD~lp  250 (763)
T TIGR00993       197 IKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSI--WFNAIVTLTHAASAP  250 (763)
T ss_pred             HhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHh--HcCEEEEEeCCccCC
Confidence            33  47999999876532211 1  23344444443321  124799999999765

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.26  E-value=4e-11  Score=87.43  Aligned_cols=136  Identities=20%  Similarity=0.323  Sum_probs=83.2

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCccc-----------cccccceeEEEEEE----cCeEEEEEEcCCCCCC-----
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEIVT-----------TIPTIGFNVETVEY----KNVSFTVWDVGGQDKI-----   73 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~-----------~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~-----   73 (180)
                      -..|+|+++|++|+|||||+|.|++.....           ..+|+.+......+    ....+.++||||--.+     
T Consensus        21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~  100 (373)
T COG5019          21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK  100 (373)
T ss_pred             CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence            568999999999999999999999764111           12344444444444    3467899999992111     


Q ss_pred             ---------hhhHHhhc--------------cccCEEEEEEECCChhhHHHHHH-HHHHHhcccccCCCeEEEEEecCCC
Q 030289           74 ---------RPLWRHYF--------------QNTHGLIFVVDSNDRERIGEAKD-ELHRMLSEDELREAVLLVFANKQDL  129 (180)
Q Consensus        74 ---------~~~~~~~~--------------~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~iiiv~nK~D~  129 (180)
                               ......|+              .+.|+++|.+.++ ...+..++- .+..+ +    ..+-+|-|+.|+|.
T Consensus       101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Pt-gh~l~~~DIe~Mk~l-s----~~vNlIPVI~KaD~  174 (373)
T COG5019         101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPT-GHGLKPLDIEAMKRL-S----KRVNLIPVIAKADT  174 (373)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCC-CCCCCHHHHHHHHHH-h----cccCeeeeeecccc
Confidence                     11112222              1468999999876 444555543 33333 3    23558999999999


Q ss_pred             CCCCCHhHHHhHhCCCccCCcceEEEE
Q 030289          130 PNAMSVSEVTDKLGLHSLRQRRWYIQA  156 (180)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (180)
                      .+..++.++.+... +.....++++|.
T Consensus       175 lT~~El~~~K~~I~-~~i~~~nI~vf~  200 (373)
T COG5019         175 LTDDELAEFKERIR-EDLEQYNIPVFD  200 (373)
T ss_pred             CCHHHHHHHHHHHH-HHHHHhCCceeC
Confidence            88666555443322 222344555553

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.25  E-value=2.3e-10  Score=85.33  Aligned_cols=151  Identities=16%  Similarity=0.117  Sum_probs=88.6

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcC----Ccc-------------cc--c---cccceeE---EEEEE-----cCeEEEE
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLG----EIV-------------TT--I---PTIGFNV---ETVEY-----KNVSFTV   64 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~----~~~-------------~~--~---~t~~~~~---~~~~~-----~~~~~~i   64 (180)
                      -.+.|+|+|+.++|||||+|+|.+.    ...             ..  .   .|+++.+   ..+.+     -..++++
T Consensus        16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl   95 (492)
T TIGR02836        16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL   95 (492)
T ss_pred             CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence            3678999999999999999999876    211             11  1   2455444   33333     2368999


Q ss_pred             EEcCCCC--------CChh---------------------hHHhhcc-ccCEEEEEE-ECC----ChhhH-HHHHHHHHH
Q 030289           65 WDVGGQD--------KIRP---------------------LWRHYFQ-NTHGLIFVV-DSN----DRERI-GEAKDELHR  108 (180)
Q Consensus        65 ~D~~G~~--------~~~~---------------------~~~~~~~-~~~~~i~v~-d~~----~~~~~-~~~~~~~~~  108 (180)
                      +||+|-.        +...                     -++..+. .++..++|. |.+    .++.+ +.-..++..
T Consensus        96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e  175 (492)
T TIGR02836        96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE  175 (492)
T ss_pred             EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence            9999911        1111                     0444555 789988888 653    12223 233345555


Q ss_pred             HhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeecc--CCCChHHHHHHHHH
Q 030289          109 MLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACAT--SGQGLYEGLDWLSS  174 (180)
Q Consensus       109 ~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~--~~~~i~~~~~~l~~  174 (180)
                      +..    .++|+++++||+|-..+.. .++...+.    .+++.+++.+|+.  +..+|..+++.+..
T Consensus       176 Lk~----~~kPfiivlN~~dp~~~et-~~l~~~l~----eky~vpvl~v~c~~l~~~DI~~il~~vL~  234 (492)
T TIGR02836       176 LKE----LNKPFIILLNSTHPYHPET-EALRQELE----EKYDVPVLAMDVESMRESDILSVLEEVLY  234 (492)
T ss_pred             HHh----cCCCEEEEEECcCCCCchh-HHHHHHHH----HHhCCceEEEEHHHcCHHHHHHHHHHHHh
Confidence            432    4899999999999443222 22222221    2234556666654  44566666666554

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.24  E-value=1.6e-10  Score=92.26  Aligned_cols=114  Identities=19%  Similarity=0.144  Sum_probs=84.8

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCC--cccc-------------------ccccceeEEEEEEcC-eEEEEEEcCCC
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGE--IVTT-------------------IPTIGFNVETVEYKN-VSFTVWDVGGQ   70 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~--~~~~-------------------~~t~~~~~~~~~~~~-~~~~i~D~~G~   70 (180)
                      .++.-||.|+|+..+|||||..+++...  ....                   .-|+.....++...+ ..+.++|||||
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH   86 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH   86 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence            5677899999999999999999997533  1110                   113334445666674 99999999999


Q ss_pred             CCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289           71 DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN  131 (180)
Q Consensus        71 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~  131 (180)
                      -.|-....+.++-+|++++|+|+...-.. .....+.+...    .++|.++++||+|...
T Consensus        87 VDFt~EV~rslrvlDgavvVvdaveGV~~-QTEtv~rqa~~----~~vp~i~fiNKmDR~~  142 (697)
T COG0480          87 VDFTIEVERSLRVLDGAVVVVDAVEGVEP-QTETVWRQADK----YGVPRILFVNKMDRLG  142 (697)
T ss_pred             cccHHHHHHHHHhhcceEEEEECCCCeee-cHHHHHHHHhh----cCCCeEEEEECccccc
Confidence            99999999999999999999999754222 22333343332    4789999999999765

>PTZ00258 GTP-binding protein; Provisional

Probab=99.24  E-value=1.1e-10  Score=87.43  Aligned_cols=80  Identities=21%  Similarity=0.266  Sum_probs=57.5

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC-ccccc--cccceeEEEEEEc-----------------CeEEEEEEcCCCCCC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE-IVTTI--PTIGFNVETVEYK-----------------NVSFTVWDVGGQDKI   73 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~--~t~~~~~~~~~~~-----------------~~~~~i~D~~G~~~~   73 (180)
                      ...++|+++|.||||||||+|+|.+.. .....  .|+......+...                 +.++.++|+||-..-
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g   98 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG   98 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence            567899999999999999999998766 22222  3556666666553                 345999999994321


Q ss_pred             ----hh---hHHhhccccCEEEEEEEC
Q 030289           74 ----RP---LWRHYFQNTHGLIFVVDS   93 (180)
Q Consensus        74 ----~~---~~~~~~~~~~~~i~v~d~   93 (180)
                          ..   .....++++|++++|+|.
T Consensus        99 a~~g~gLg~~fL~~Ir~aD~il~VVd~  125 (390)
T PTZ00258         99 ASEGEGLGNAFLSHIRAVDGIYHVVRA  125 (390)
T ss_pred             CcchhHHHHHHHHHHHHCCEEEEEEeC
Confidence                11   233455789999999997

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.24  E-value=3.9e-11  Score=86.22  Aligned_cols=57  Identities=28%  Similarity=0.314  Sum_probs=40.7

Q ss_pred             CCeEEEEEecCCCCCCC--CHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHHh
Q 030289          117 EAVLLVFANKQDLPNAM--SVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV  176 (180)
Q Consensus       117 ~~~iiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  176 (180)
                      ..+-++|+||+|+.+..  +++++...+...   ....+++++|+++|+|++++.+||.++.
T Consensus       230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~l---np~a~I~~vSA~tGeGld~L~~~L~~~~  288 (290)
T PRK10463        230 AAASLMLLNKVDLLPYLNFDVEKCIACAREV---NPEIEIILISATSGEGMDQWLNWLETQR  288 (290)
T ss_pred             hcCcEEEEEhHHcCcccHHHHHHHHHHHHhh---CCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            34569999999997632  344443333221   2346899999999999999999998753

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=99.22  E-value=1.2e-10  Score=81.35  Aligned_cols=132  Identities=24%  Similarity=0.418  Sum_probs=98.0

Q ss_pred             ccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCC----------hhhHHHHHHHHHHHhcccccC
Q 030289           47 TIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSND----------RERIGEAKDELHRMLSEDELR  116 (180)
Q Consensus        47 t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~  116 (180)
                      |.|+....+++++++|+.+|.+|+..-+.-|...+.+..++++|+..+.          ...+.+....+..+-..++..
T Consensus       189 TsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~  268 (379)
T KOG0099|consen  189 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLR  268 (379)
T ss_pred             ccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHh
Confidence            6778888899999999999999999888899999999999999998763          246666677777777777788


Q ss_pred             CCeEEEEEecCCCCCCC------CHhH------------------------HHhH-------hCCCcc---CCcceEEEE
Q 030289          117 EAVLLVFANKQDLPNAM------SVSE------------------------VTDK-------LGLHSL---RQRRWYIQA  156 (180)
Q Consensus       117 ~~~iiiv~nK~D~~~~~------~~~~------------------------~~~~-------~~~~~~---~~~~~~~~~  156 (180)
                      .+.+|+++||.|+..+.      ..++                        ..++       +....+   -.+.+..++
T Consensus       269 tisvIlFLNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHF  348 (379)
T KOG0099|consen  269 TISVILFLNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHF  348 (379)
T ss_pred             hhheeEEecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccce
Confidence            89999999999975420      0000                        0110       111111   123456789


Q ss_pred             eeccCCCChHHHHHHHHHHhhh
Q 030289          157 ACATSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       157 ~Sa~~~~~i~~~~~~l~~~~~~  178 (180)
                      ++|.+-++|..+|....+.+..
T Consensus       349 TcAvDTenIrrVFnDcrdiIqr  370 (379)
T KOG0099|consen  349 TCAVDTENIRRVFNDCRDIIQR  370 (379)
T ss_pred             eEeechHHHHHHHHHHHHHHHH
Confidence            9999999999999988776654

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.20  E-value=1.6e-10  Score=84.80  Aligned_cols=120  Identities=18%  Similarity=0.308  Sum_probs=75.9

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCCcccc----------ccccceeEEEEEE----cCeEEEEEEcCCCCC-------C
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGEIVTT----------IPTIGFNVETVEY----KNVSFTVWDVGGQDK-------I   73 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~----------~~t~~~~~~~~~~----~~~~~~i~D~~G~~~-------~   73 (180)
                      -.|+++++|++|.|||||||.|+.......          ..|+.+....+..    -.+.+.++||||-..       +
T Consensus        20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w   99 (366)
T KOG2655|consen   20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW   99 (366)
T ss_pred             CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence            359999999999999999999987642211          1244555555544    236789999999111       1


Q ss_pred             -------hhhHHhhc-----------c--ccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC
Q 030289           74 -------RPLWRHYF-----------Q--NTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM  133 (180)
Q Consensus        74 -------~~~~~~~~-----------~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~  133 (180)
                             ......|+           .  +.|+++|.+.++ ...+..++-..+.-+.    ..+.+|-|+.|+|.....
T Consensus       100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~-ghgL~p~Di~~Mk~l~----~~vNiIPVI~KaD~lT~~  174 (366)
T KOG2655|consen  100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPT-GHGLKPLDIEFMKKLS----KKVNLIPVIAKADTLTKD  174 (366)
T ss_pred             hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCC-CCCCcHhhHHHHHHHh----ccccccceeeccccCCHH
Confidence                   11122222           2  579999999876 3334455433333222    356689999999998865


Q ss_pred             CHhHHH
Q 030289          134 SVSEVT  139 (180)
Q Consensus       134 ~~~~~~  139 (180)
                      .+..+.
T Consensus       175 El~~~K  180 (366)
T KOG2655|consen  175 ELNQFK  180 (366)
T ss_pred             HHHHHH
Confidence            554433

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.17  E-value=1.5e-10  Score=85.93  Aligned_cols=78  Identities=22%  Similarity=0.264  Sum_probs=55.6

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCC-cccc--ccccceeEEEEEEcC-----------------eEEEEEEcCCCCCC---
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGE-IVTT--IPTIGFNVETVEYKN-----------------VSFTVWDVGGQDKI---   73 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~-~~~~--~~t~~~~~~~~~~~~-----------------~~~~i~D~~G~~~~---   73 (180)
                      ++|+++|.|+||||||+|+|++.. ....  ..|++.....+.+.+                 .++.++|+||-..-   
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            689999999999999999999877 2222  235566665555533                 35999999994321   


Q ss_pred             -hh---hHHhhccccCEEEEEEECC
Q 030289           74 -RP---LWRHYFQNTHGLIFVVDSN   94 (180)
Q Consensus        74 -~~---~~~~~~~~~~~~i~v~d~~   94 (180)
                       ..   .....++++|++++|+|+.
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence             12   2333457899999999973

>smart00053 DYNc Dynamin, GTPase

Probab=99.17  E-value=1.2e-09  Score=77.11  Aligned_cols=69  Identities=16%  Similarity=0.201  Sum_probs=42.5

Q ss_pred             eEEEEEEcCCCCC-------------ChhhHHhhccc-cCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEe
Q 030289           60 VSFTVWDVGGQDK-------------IRPLWRHYFQN-THGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFAN  125 (180)
Q Consensus        60 ~~~~i~D~~G~~~-------------~~~~~~~~~~~-~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~n  125 (180)
                      ..+.++|+||-..             ...+...|+++ .+.+++|+|+...-.-+........+ .   ....+.++|+|
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~l-d---~~~~rti~ViT  200 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEV-D---PQGERTIGVIT  200 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHH-H---HcCCcEEEEEE
Confidence            5789999999542             12346667774 45889999875321111111222222 1   24678999999


Q ss_pred             cCCCCCC
Q 030289          126 KQDLPNA  132 (180)
Q Consensus       126 K~D~~~~  132 (180)
                      |+|..++
T Consensus       201 K~D~~~~  207 (240)
T smart00053      201 KLDLMDE  207 (240)
T ss_pred             CCCCCCc
Confidence            9998764

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>cd01900 YchF YchF subfamily

Probab=99.16  E-value=1.1e-10  Score=83.77  Aligned_cols=75  Identities=25%  Similarity=0.298  Sum_probs=53.0

Q ss_pred             EEEEcCCCCChHHHHHHhhcCCc-ccc--ccccceeEEEEEEcC-----------------eEEEEEEcCCCCCC----h
Q 030289           19 ILMVGLDAAGKTTILYKLKLGEI-VTT--IPTIGFNVETVEYKN-----------------VSFTVWDVGGQDKI----R   74 (180)
Q Consensus        19 i~i~G~~~~GKStli~~l~~~~~-~~~--~~t~~~~~~~~~~~~-----------------~~~~i~D~~G~~~~----~   74 (180)
                      |+++|.|+||||||+|+|++... ...  ..|++.....+.+.+                 ..+.++|+||-..-    .
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            57999999999999999998772 222  236666666665533                 25999999994321    1


Q ss_pred             hh---HHhhccccCEEEEEEEC
Q 030289           75 PL---WRHYFQNTHGLIFVVDS   93 (180)
Q Consensus        75 ~~---~~~~~~~~~~~i~v~d~   93 (180)
                      .+   ....++++|++++|+|+
T Consensus        81 glg~~fL~~i~~~D~li~VV~~  102 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRC  102 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeC
Confidence            22   23345679999999986

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=99.13  E-value=1e-10  Score=80.47  Aligned_cols=134  Identities=22%  Similarity=0.378  Sum_probs=97.0

Q ss_pred             ccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEEC----------CChhhHHHHHHHHHHHhcccc
Q 030289           45 IPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDS----------NDRERIGEAKDELHRMLSEDE  114 (180)
Q Consensus        45 ~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~~~~~~~~~~~~~~~~~~  114 (180)
                      .||+|+....++..++-+++.|.+|+..-+.-|.+++.+.-.+++++..          +++...++....+.-++..++
T Consensus       184 vPTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPW  263 (359)
T KOG0085|consen  184 VPTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW  263 (359)
T ss_pred             cCcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhcccc
Confidence            4577777777777888999999999988888888888887777666644          345667778888888989999


Q ss_pred             cCCCeEEEEEecCCCCCCCC------------------HhH----HHhHhCCCcc-CCcceEEEEeeccCCCChHHHHHH
Q 030289          115 LREAVLLVFANKQDLPNAMS------------------VSE----VTDKLGLHSL-RQRRWYIQAACATSGQGLYEGLDW  171 (180)
Q Consensus       115 ~~~~~iiiv~nK~D~~~~~~------------------~~~----~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~~~~~  171 (180)
                      ..+.++|+++||.|+.++.-                  ...    +.+.+..... ...-+.-++++|.+-+||.-+|..
T Consensus       264 F~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaa  343 (359)
T KOG0085|consen  264 FQNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAA  343 (359)
T ss_pred             ccCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHH
Confidence            99999999999999876321                  111    1111111111 122234468888889999999999


Q ss_pred             HHHHhhh
Q 030289          172 LSSNVSA  178 (180)
Q Consensus       172 l~~~~~~  178 (180)
                      +-+.+.+
T Consensus       344 VkDtiLq  350 (359)
T KOG0085|consen  344 VKDTILQ  350 (359)
T ss_pred             HHHHHHH
Confidence            8887765

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=99.09  E-value=2.8e-09  Score=78.42  Aligned_cols=156  Identities=15%  Similarity=0.118  Sum_probs=99.9

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCCccc-----------------cccccceeEEEEEEc-----------------
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGEIVT-----------------TIPTIGFNVETVEYK-----------------   58 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~-----------------~~~t~~~~~~~~~~~-----------------   58 (180)
                      +..++.+++.|+..+|||||+-.|..++...                 ..-+.++.+..+.++                 
T Consensus       114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~  193 (527)
T COG5258         114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA  193 (527)
T ss_pred             CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence            4668999999999999999998886544111                 011333333333331                 


Q ss_pred             ------CeEEEEEEcCCCCCChhhHHhhc--cccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCC
Q 030289           59 ------NVSFTVWDVGGQDKIRPLWRHYF--QNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP  130 (180)
Q Consensus        59 ------~~~~~i~D~~G~~~~~~~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~  130 (180)
                            +.-++++||.|++.|...+..-+  ++.|..++++.+++.-  ....+.+..+...   ...|++++.||+|+.
T Consensus       194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~--~~~tkEHLgi~~a---~~lPviVvvTK~D~~  268 (527)
T COG5258         194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGV--TKMTKEHLGIALA---MELPVIVVVTKIDMV  268 (527)
T ss_pred             HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCc--chhhhHhhhhhhh---hcCCEEEEEEecccC
Confidence                  13489999999999876644433  4689999999987543  3444444444332   478999999999998


Q ss_pred             CCCCHhH----HHhHh---CC-----------------CccCCcceEEEEeeccCCCChHHHHHHHH
Q 030289          131 NAMSVSE----VTDKL---GL-----------------HSLRQRRWYIQAACATSGQGLYEGLDWLS  173 (180)
Q Consensus       131 ~~~~~~~----~~~~~---~~-----------------~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  173 (180)
                      ++.....    +...+   +.                 ..+...-.|+|.+|+.+|+|++-+.+.+.
T Consensus       269 ~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~  335 (527)
T COG5258         269 PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL  335 (527)
T ss_pred             cHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHH
Confidence            7533222    11111   10                 01112246999999999999886655544

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=99.08  E-value=4.3e-10  Score=77.72  Aligned_cols=139  Identities=16%  Similarity=0.217  Sum_probs=76.8

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCCccc----------cccccceeEEEEEE--c--CeEEEEEEcCCCCC---Chhh--
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGEIVT----------TIPTIGFNVETVEY--K--NVSFTVWDVGGQDK---IRPL--   76 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~~~~----------~~~t~~~~~~~~~~--~--~~~~~i~D~~G~~~---~~~~--   76 (180)
                      .|||+++|.+|.|||||+|.|+......          ...|+.+...+..+  +  ..++.++||||--.   ...+  
T Consensus        46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe  125 (336)
T KOG1547|consen   46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE  125 (336)
T ss_pred             ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence            7999999999999999999997543111          11144433333222  3  35788999999111   1111  


Q ss_pred             ---------HHhhcc--------------ccCEEEEEEECCChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCC
Q 030289           77 ---------WRHYFQ--------------NTHGLIFVVDSNDRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNA  132 (180)
Q Consensus        77 ---------~~~~~~--------------~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~  132 (180)
                               ...|++              +.|+++|.+..+ ..++..++ .++..+..     -+.++-|+.|+|...-
T Consensus       126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~pt-GhsLrplDieflkrLt~-----vvNvvPVIakaDtlTl  199 (336)
T KOG1547|consen  126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPT-GHSLRPLDIEFLKRLTE-----VVNVVPVIAKADTLTL  199 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCC-CCccCcccHHHHHHHhh-----hheeeeeEeecccccH
Confidence                     222222              468899988775 33333333 22232221     2347889999997764


Q ss_pred             CCHhHHHhHhCCCccCCcceEEEEeeccC
Q 030289          133 MSVSEVTDKLGLHSLRQRRWYIQAACATS  161 (180)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  161 (180)
                      .+..++.+.... .+...++.+++--+.+
T Consensus       200 eEr~~FkqrI~~-el~~~~i~vYPq~~fd  227 (336)
T KOG1547|consen  200 EERSAFKQRIRK-ELEKHGIDVYPQDSFD  227 (336)
T ss_pred             HHHHHHHHHHHH-HHHhcCcccccccccc
Confidence            333333332221 1234455555554444

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=99.07  E-value=2.3e-10  Score=80.59  Aligned_cols=162  Identities=14%  Similarity=0.058  Sum_probs=96.5

Q ss_pred             hhhcccCccEEEEEcCCCCChHHHHHHhhcCCc-cccc-ccccee-EEEEEEcCeEEEEEEcCC----------CCCChh
Q 030289            9 KMLFARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTI-PTIGFN-VETVEYKNVSFTVWDVGG----------QDKIRP   75 (180)
Q Consensus         9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~-~t~~~~-~~~~~~~~~~~~i~D~~G----------~~~~~~   75 (180)
                      ..+++.+..++++.|.+++|||+|+|-+..... .... ++.+.. ......-+..+.++|.||          ...+..
T Consensus       129 ~D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~  208 (320)
T KOG2486|consen  129 EDCPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDK  208 (320)
T ss_pred             ccCCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhH
Confidence            345578889999999999999999999987662 2111 122211 111222455789999999          223455


Q ss_pred             hHHhhccccC---EEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC------HhHHHh-HhCC-
Q 030289           76 LWRHYFQNTH---GLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS------VSEVTD-KLGL-  144 (180)
Q Consensus        76 ~~~~~~~~~~---~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~------~~~~~~-~~~~-  144 (180)
                      ....|+.+-+   .+.+.+|++-  +++..+.-..+++..   .++|..+|+||||......      ...+.. ...+ 
T Consensus       209 ~t~~Y~leR~nLv~~FLLvd~sv--~i~~~D~~~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~  283 (320)
T KOG2486|consen  209 FTKSYLLERENLVRVFLLVDASV--PIQPTDNPEIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLI  283 (320)
T ss_pred             hHHHHHHhhhhhheeeeeeeccC--CCCCCChHHHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhcc
Confidence            6677776543   3455556542  223333333333332   5799999999999765321      011111 1011 


Q ss_pred             CccCCcceEEEEeeccCCCChHHHHHHHHHH
Q 030289          145 HSLRQRRWYIQAACATSGQGLYEGLDWLSSN  175 (180)
Q Consensus       145 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  175 (180)
                      +.......|++.+|+.++.|++++...+.+.
T Consensus       284 ~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~  314 (320)
T KOG2486|consen  284 RGVFLVDLPWIYVSSVTSLGRDLLLLHIAQL  314 (320)
T ss_pred             ccceeccCCceeeecccccCceeeeeehhhh
Confidence            1112234467889999999999988776654

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=99.07  E-value=4.8e-10  Score=73.30  Aligned_cols=52  Identities=23%  Similarity=0.288  Sum_probs=37.4

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCCccccc--cccceeEEEEEEcCeEEEEEEcCCC
Q 030289           18 RILMVGLDAAGKTTILYKLKLGEIVTTI--PTIGFNVETVEYKNVSFTVWDVGGQ   70 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~~~~~~--~t~~~~~~~~~~~~~~~~i~D~~G~   70 (180)
                      +++++|.+|+|||||+|++.+.......  +..+.....+..++ .+.+|||||-
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP-TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC-CEEEEECCCc
Confidence            8999999999999999999987733222  22223333444443 6899999994

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd01858 NGP_1 NGP-1

Probab=99.07  E-value=5.3e-10  Score=74.44  Aligned_cols=55  Identities=18%  Similarity=0.244  Sum_probs=37.4

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEE-cCeEEEEEEcCC
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-KNVSFTVWDVGG   69 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~D~~G   69 (180)
                      .+++|+++|.+|+|||||+|+|.+.......++.+.......+ .+..+.++||||
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~liDtPG  156 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMKRIYLIDCPG  156 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCCCEEEEECcC
Confidence            5788999999999999999999986633333322322211111 234588999999

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.04  E-value=3.4e-10  Score=86.30  Aligned_cols=156  Identities=17%  Similarity=0.273  Sum_probs=112.0

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCCcccccccccee---EEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN---VETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV   91 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~---~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (180)
                      ..+|+.|+|..++|||+|+++++.+.+.....+.+-.   ...+..+...+.+.|.+|..     ...|....|++|+||
T Consensus        29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavIfvf  103 (749)
T KOG0705|consen   29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVFVF  103 (749)
T ss_pred             chhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeeccceEeeeecccCCc-----hhhhhhhccceEEEE
Confidence            4689999999999999999999988855444433322   23344467788888988854     334556799999999


Q ss_pred             ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC---CCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289           92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA---MSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG  168 (180)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (180)
                      ...+..+++.+......+........+|+++++++.-....   ...+.....+.   .......+|++++..|.+++..
T Consensus       104 ~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~---~~~krcsy~et~atyGlnv~rv  180 (749)
T KOG0705|consen  104 SVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLS---AQMKRCSYYETCATYGLNVERV  180 (749)
T ss_pred             EeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHH---HhcCccceeecchhhhhhHHHH
Confidence            99999999999988888876666667888888887643221   11111111111   1223357999999999999999


Q ss_pred             HHHHHHHhhh
Q 030289          169 LDWLSSNVSA  178 (180)
Q Consensus       169 ~~~l~~~~~~  178 (180)
                      |..+...+..
T Consensus       181 f~~~~~k~i~  190 (749)
T KOG0705|consen  181 FQEVAQKIVQ  190 (749)
T ss_pred             HHHHHHHHHH
Confidence            9999887654

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=7.2e-09  Score=81.07  Aligned_cols=152  Identities=15%  Similarity=0.249  Sum_probs=89.5

Q ss_pred             HHHHhhhcccCccEEEEEcCCCCChHHHHHHhhcCC--ccccccccceeE------------------------------
Q 030289            5 ISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIPTIGFNV------------------------------   52 (180)
Q Consensus         5 ~~~~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~--~~~~~~t~~~~~------------------------------   52 (180)
                      +..+...+.+.+.||+|.|...+||||++|+++..+  +....+|+.+..                              
T Consensus        98 l~~i~~~l~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~  177 (749)
T KOG0448|consen   98 LDAIDEVLARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLA  177 (749)
T ss_pred             HHHHHHHHhhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHH
Confidence            344577888999999999999999999999998654  111112111000                              


Q ss_pred             --------------EEEEE-c------CeEEEEEEcCCCC---CChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHH
Q 030289           53 --------------ETVEY-K------NVSFTVWDVGGQD---KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHR  108 (180)
Q Consensus        53 --------------~~~~~-~------~~~~~i~D~~G~~---~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~  108 (180)
                                    ..+-. +      ...+.++|.||-.   ....-...+..++|++|+|.++.+.-+..+. +++..
T Consensus       178 haL~~~~~~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek-~Ff~~  256 (749)
T KOG0448|consen  178 HALKPDKDLGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK-QFFHK  256 (749)
T ss_pred             HhcCcccccCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH-HHHHH
Confidence                          00000 1      1268899999944   3344566677789999999998755443222 33333


Q ss_pred             HhcccccCCCeEEEEEecCCCCCCCC--HhHHHhH---hCCCccCCcceEEEEeeccC
Q 030289          109 MLSEDELREAVLLVFANKQDLPNAMS--VSEVTDK---LGLHSLRQRRWYIQAACATS  161 (180)
Q Consensus       109 ~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~Sa~~  161 (180)
                      ...    .+.-+.|+-||.|......  .+.+...   +.....+.-.-.+|++|+++
T Consensus       257 vs~----~KpniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e  310 (749)
T KOG0448|consen  257 VSE----EKPNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE  310 (749)
T ss_pred             hhc----cCCcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence            322    2445777778889765321  2222222   22222223344689999553

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=99.03  E-value=1e-09  Score=85.51  Aligned_cols=112  Identities=17%  Similarity=0.168  Sum_probs=77.7

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCCcccccc----------------ccceeE----EEEEE-----cCeEEEEEEc
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP----------------TIGFNV----ETVEY-----KNVSFTVWDV   67 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~----------------t~~~~~----~~~~~-----~~~~~~i~D~   67 (180)
                      +....+++++|+-++|||+|+.-|..+.-+...+                ..++.+    .++-.     +.+-+.+.||
T Consensus       125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT  204 (971)
T KOG0468|consen  125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT  204 (971)
T ss_pred             cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence            4668899999999999999998886544111100                111111    12111     4467899999


Q ss_pred             CCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCC
Q 030289           68 GGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDL  129 (180)
Q Consensus        68 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~  129 (180)
                      |||-.+..-....++.+|++++++|+...-.+..- ..+.+.    -....|+++|+||.|.
T Consensus       205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE-r~ikha----iq~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE-RIIKHA----IQNRLPIVVVINKVDR  261 (971)
T ss_pred             CCcccchHHHHHHhhhcceEEEEEEcccCceeeHH-HHHHHH----HhccCcEEEEEehhHH
Confidence            99999998888999999999999999754433222 222222    2357899999999994

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=99.01  E-value=1e-09  Score=73.99  Aligned_cols=55  Identities=20%  Similarity=0.346  Sum_probs=38.3

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCccccccccc--eeEEEEEEcCeEEEEEEcCC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEYKNVSFTVWDVGG   69 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~--~~~~~~~~~~~~~~i~D~~G   69 (180)
                      ...++++++|.+|+|||||+|+|.+.......+..+  .....+.. +..+.++||||
T Consensus       115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~-~~~~~l~DtPG  171 (172)
T cd04178         115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL-DKKVKLLDSPG  171 (172)
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe-CCCEEEEECcC
Confidence            335899999999999999999999877333333222  22223333 34689999999

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd01855 YqeH YqeH

Probab=99.01  E-value=9e-10  Score=75.63  Aligned_cols=98  Identities=17%  Similarity=0.099  Sum_probs=62.7

Q ss_pred             ChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC-HhHHHhHh---CCCccC
Q 030289           73 IRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS-VSEVTDKL---GLHSLR  148 (180)
Q Consensus        73 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~-~~~~~~~~---~~~~~~  148 (180)
                      ++..+..+++++|++++|+|+.++..  .   |...+...  ..+.|+++|+||+|+.+... ........   ......
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~--~---~~~~l~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~   96 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPG--S---LIPRLRLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLG   96 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCC--c---cchhHHHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcC
Confidence            46778889999999999999986531  1   11111111  24679999999999875332 22111111   000000


Q ss_pred             CcceEEEEeeccCCCChHHHHHHHHHHhh
Q 030289          149 QRRWYIQAACATSGQGLYEGLDWLSSNVS  177 (180)
Q Consensus       149 ~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  177 (180)
                      .....++++||+++.|++++++.+.+.+.
T Consensus        97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          97 LKPKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence            01125899999999999999999988653

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.01  E-value=5.5e-09  Score=76.56  Aligned_cols=116  Identities=21%  Similarity=0.211  Sum_probs=80.8

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCccc----cccccceeEEEEEE-------------c------------------
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVEY-------------K------------------   58 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~----~~~t~~~~~~~~~~-------------~------------------   58 (180)
                      ..+.=|+++|+-.+||||+|+.|+.++++.    ..||++........             +                  
T Consensus        56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR  135 (532)
T KOG1954|consen   56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR  135 (532)
T ss_pred             ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence            345669999999999999999999877332    23444432222211             0                  


Q ss_pred             ----------CeEEEEEEcCCCC-----------CChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCC
Q 030289           59 ----------NVSFTVWDVGGQD-----------KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELRE  117 (180)
Q Consensus        59 ----------~~~~~i~D~~G~~-----------~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  117 (180)
                                -.+++++||||--           .|...+.=+..++|.++++||+...+.-.+....+..+..+    .
T Consensus       136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~----E  211 (532)
T KOG1954|consen  136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH----E  211 (532)
T ss_pred             HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC----c
Confidence                      0368999999922           13445677778999999999997666556777777777554    2


Q ss_pred             CeEEEEEecCCCCCCC
Q 030289          118 AVLLVFANKQDLPNAM  133 (180)
Q Consensus       118 ~~iiiv~nK~D~~~~~  133 (180)
                      -.+-+|+||.|..+.+
T Consensus       212 dkiRVVLNKADqVdtq  227 (532)
T KOG1954|consen  212 DKIRVVLNKADQVDTQ  227 (532)
T ss_pred             ceeEEEeccccccCHH
Confidence            3478999999987744

>cd01859 MJ1464 MJ1464

Probab=99.00  E-value=2.4e-09  Score=71.17  Aligned_cols=95  Identities=17%  Similarity=0.113  Sum_probs=62.8

Q ss_pred             ChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcce
Q 030289           73 IRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRW  152 (180)
Q Consensus        73 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  152 (180)
                      ++.+.+...+++|++++|+|++++.....  ..+.....   ..+.|+++|+||+|+.+......+. ..    ....+.
T Consensus         2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~-~~----~~~~~~   71 (156)
T cd01859           2 WKRLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVL---ELGKKLLIVLNKADLVPKEVLEKWK-SI----KESEGI   71 (156)
T ss_pred             HHHHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHH---hCCCcEEEEEEhHHhCCHHHHHHHH-HH----HHhCCC
Confidence            35667888889999999999976532111  11222221   2368999999999986432222211 11    111235


Q ss_pred             EEEEeeccCCCChHHHHHHHHHHhh
Q 030289          153 YIQAACATSGQGLYEGLDWLSSNVS  177 (180)
Q Consensus       153 ~~~~~Sa~~~~~i~~~~~~l~~~~~  177 (180)
                      +++++||+++.|++++++.+.+.+.
T Consensus        72 ~~~~iSa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          72 PVVYVSAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             cEEEEEccccccHHHHHHHHHHHHh
Confidence            7899999999999999999987764

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.99  E-value=5.3e-08  Score=68.06  Aligned_cols=84  Identities=17%  Similarity=0.262  Sum_probs=60.3

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC--ccccc-cccceeEEEEEEcCeEEEEEEcCCCCCCh-------hhHHhhccc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE--IVTTI-PTIGFNVETVEYKNVSFTVWDVGGQDKIR-------PLWRHYFQN   83 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~--~~~~~-~t~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~   83 (180)
                      .-.-+|+++|-|.+|||||+..+....  ...|. .|...-...+.+.+..+++.|.||--+-.       .......+-
T Consensus        60 sGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArt  139 (364)
T KOG1486|consen   60 SGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVART  139 (364)
T ss_pred             cCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeec
Confidence            445689999999999999999887654  22222 35556667778899999999999933221       112234466


Q ss_pred             cCEEEEEEECCChh
Q 030289           84 THGLIFVVDSNDRE   97 (180)
Q Consensus        84 ~~~~i~v~d~~~~~   97 (180)
                      +|.++.|.|++..+
T Consensus       140 aDlilMvLDatk~e  153 (364)
T KOG1486|consen  140 ADLILMVLDATKSE  153 (364)
T ss_pred             ccEEEEEecCCcch
Confidence            89999999998654

>PRK12289 GTPase RsgA; Reviewed

Probab=98.97  E-value=3.2e-09  Score=79.07  Aligned_cols=92  Identities=18%  Similarity=0.161  Sum_probs=64.8

Q ss_pred             hhHHhhccccCEEEEEEECCChh-hHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceE
Q 030289           75 PLWRHYFQNTHGLIFVVDSNDRE-RIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWY  153 (180)
Q Consensus        75 ~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  153 (180)
                      .+.+..+.++|.+++|+|+.++. ....+..|+... .   ..++|+++|+||+|+.++.....+...+     ...+..
T Consensus        81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a-~---~~~ip~ILVlNK~DLv~~~~~~~~~~~~-----~~~g~~  151 (352)
T PRK12289         81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKA-E---STGLEIVLCLNKADLVSPTEQQQWQDRL-----QQWGYQ  151 (352)
T ss_pred             ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHH-H---HCCCCEEEEEEchhcCChHHHHHHHHHH-----HhcCCe
Confidence            33445678999999999998765 334556666544 1   2578999999999997543333333222     233457


Q ss_pred             EEEeeccCCCChHHHHHHHHHH
Q 030289          154 IQAACATSGQGLYEGLDWLSSN  175 (180)
Q Consensus       154 ~~~~Sa~~~~~i~~~~~~l~~~  175 (180)
                      ++++||.++.|++++++.+...
T Consensus       152 v~~iSA~tg~GI~eL~~~L~~k  173 (352)
T PRK12289        152 PLFISVETGIGLEALLEQLRNK  173 (352)
T ss_pred             EEEEEcCCCCCHHHHhhhhccc
Confidence            8999999999999999888643

>cd01859 MJ1464 MJ1464

Probab=98.95  E-value=5e-09  Score=69.63  Aligned_cols=55  Identities=25%  Similarity=0.348  Sum_probs=40.4

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEE-EEEcCeEEEEEEcCC
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET-VEYKNVSFTVWDVGG   69 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~-~~~~~~~~~i~D~~G   69 (180)
                      ...+++++|.+|+|||||+|++.+.......++.+..... +...+..+.+|||||
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpG  155 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITSKIYLLDTPG  155 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCCCEEEEECcC
Confidence            5679999999999999999999976655555555543321 111334799999999

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=98.90  E-value=1.1e-08  Score=75.27  Aligned_cols=79  Identities=24%  Similarity=0.333  Sum_probs=56.6

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC-cccccc--ccceeEEEEEE------------------cCeEEEEEEcCCCC---
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE-IVTTIP--TIGFNVETVEY------------------KNVSFTVWDVGGQD---   71 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~--t~~~~~~~~~~------------------~~~~~~i~D~~G~~---   71 (180)
                      .+++.|+|.|+||||||+|+++... .....|  |++++...+.+                  ....+.++|++|--   
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            4789999999999999999999776 223333  66666555444                  23578999998822   


Q ss_pred             ----CChhhHHhhccccCEEEEEEECC
Q 030289           72 ----KIRPLWRHYFQNTHGLIFVVDSN   94 (180)
Q Consensus        72 ----~~~~~~~~~~~~~~~~i~v~d~~   94 (180)
                          .+......-++.+|+++.|+++.
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence                22333445567899999999865

>cd01855 YqeH YqeH

Probab=98.90  E-value=5e-09  Score=71.92  Aligned_cols=54  Identities=22%  Similarity=0.372  Sum_probs=36.0

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCCc----------cccccccceeEEEEEEcCeEEEEEEcCC
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGEI----------VTTIPTIGFNVETVEYKNVSFTVWDVGG   69 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~~----------~~~~~t~~~~~~~~~~~~~~~~i~D~~G   69 (180)
                      +..+++++|.+|+|||||+|+|.+...          ....|.+......+.... .+.++||||
T Consensus       126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~DtPG  189 (190)
T cd01855         126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN-GKKLYDTPG  189 (190)
T ss_pred             cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC-CCEEEeCcC
Confidence            457899999999999999999997542          112222222222333332 689999999

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd01856 YlqF YlqF

Probab=98.89  E-value=6.1e-09  Score=70.29  Aligned_cols=56  Identities=16%  Similarity=0.332  Sum_probs=38.7

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCccccccc--cceeEEEEEEcCeEEEEEEcCCC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPT--IGFNVETVEYKNVSFTVWDVGGQ   70 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t--~~~~~~~~~~~~~~~~i~D~~G~   70 (180)
                      ...++++++|.+|+|||||+|++.+.......+.  .......+..+ ..+.+|||||-
T Consensus       113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-~~~~~iDtpG~  170 (171)
T cd01856         113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-PGIYLLDTPGI  170 (171)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-CCEEEEECCCC
Confidence            4557999999999999999999998764332222  22222223333 56899999993

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.88  E-value=7.4e-09  Score=75.51  Aligned_cols=56  Identities=20%  Similarity=0.344  Sum_probs=39.2

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCccccccccc--eeEEEEEEcCeEEEEEEcCCC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEYKNVSFTVWDVGGQ   70 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~--~~~~~~~~~~~~~~i~D~~G~   70 (180)
                      ...++++++|.+|||||||+|+|.+.......+..+  .....+.. +..+.++||||-
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtPGi  176 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKL-GKGLELLDTPGI  176 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEe-CCcEEEEECCCc
Confidence            456899999999999999999999876333333222  22223333 346899999994

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.87  E-value=6.9e-09  Score=75.27  Aligned_cols=56  Identities=18%  Similarity=0.325  Sum_probs=38.3

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCccccccccc--eeEEEEEEcCeEEEEEEcCCC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEYKNVSFTVWDVGGQ   70 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~--~~~~~~~~~~~~~~i~D~~G~   70 (180)
                      .+.++++++|.+|+|||||+|+|.+.......+..+  .....+... ..+.++||||-
T Consensus       116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtPG~  173 (276)
T TIGR03596       116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLS-DGLELLDTPGI  173 (276)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeC-CCEEEEECCCc
Confidence            356899999999999999999999766322222222  222233332 36899999995

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.87  E-value=1.5e-08  Score=75.49  Aligned_cols=89  Identities=18%  Similarity=0.127  Sum_probs=64.3

Q ss_pred             ccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeecc
Q 030289           81 FQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACAT  160 (180)
Q Consensus        81 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  160 (180)
                      ..++|.+++|++.....++..+..|+....    ..++|.++|+||+|+.++...........  .....+.+++++||+
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~----~~~i~~VIVlNK~DL~~~~~~~~~~~~~~--~y~~~g~~v~~vSA~  191 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACE----TLGIEPLIVLNKIDLLDDEGRAFVNEQLD--IYRNIGYRVLMVSSH  191 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCcHHHHHHHHHHH--HHHhCCCeEEEEeCC
Confidence            356899999999988888888888876442    25688999999999976432211111111  112345689999999


Q ss_pred             CCCChHHHHHHHHHH
Q 030289          161 SGQGLYEGLDWLSSN  175 (180)
Q Consensus       161 ~~~~i~~~~~~l~~~  175 (180)
                      ++.|++++++.+...
T Consensus       192 tg~GideL~~~L~~k  206 (347)
T PRK12288        192 TGEGLEELEAALTGR  206 (347)
T ss_pred             CCcCHHHHHHHHhhC
Confidence            999999999988754

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.84  E-value=1.8e-08  Score=73.51  Aligned_cols=88  Identities=18%  Similarity=0.110  Sum_probs=63.9

Q ss_pred             HhhccccCEEEEEEECCChh-hHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEE
Q 030289           78 RHYFQNTHGLIFVVDSNDRE-RIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQA  156 (180)
Q Consensus        78 ~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (180)
                      ...+.++|.+++|+|+.++. ++..+..|+..+..    .++|+++|+||+|+.++.........     ....+.++++
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~~-----~~~~g~~v~~  143 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEEEELELVE-----ALALGYPVLA  143 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHHHHHHHHH-----HHhCCCeEEE
Confidence            34578899999999999887 77777887765532    46889999999999764211111111     1123568999


Q ss_pred             eeccCCCChHHHHHHHHH
Q 030289          157 ACATSGQGLYEGLDWLSS  174 (180)
Q Consensus       157 ~Sa~~~~~i~~~~~~l~~  174 (180)
                      +|++++.|+++++..+..
T Consensus       144 vSA~~g~gi~~L~~~L~~  161 (287)
T cd01854         144 VSAKTGEGLDELREYLKG  161 (287)
T ss_pred             EECCCCccHHHHHhhhcc
Confidence            999999999999887754

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.84  E-value=2e-08  Score=72.87  Aligned_cols=80  Identities=26%  Similarity=0.375  Sum_probs=58.2

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC-cccccc--ccceeEEEEEE-----------------cCeEEEEEEcCCCCC-
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIP--TIGFNVETVEY-----------------KNVSFTVWDVGGQDK-   72 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~--t~~~~~~~~~~-----------------~~~~~~i~D~~G~~~-   72 (180)
                      .++.++.|+|.|++|||||+|.|.... .....|  |++++...+.+                 .+..++++|++|-.+ 
T Consensus        18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG   97 (391)
T KOG1491|consen   18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG   97 (391)
T ss_pred             CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence            357899999999999999999999777 333344  78877766655                 235799999998332 


Q ss_pred             ------ChhhHHhhccccCEEEEEEEC
Q 030289           73 ------IRPLWRHYFQNTHGLIFVVDS   93 (180)
Q Consensus        73 ------~~~~~~~~~~~~~~~i~v~d~   93 (180)
                            .......-++.+|+++-|+++
T Consensus        98 As~G~GLGN~FLs~iR~vDaifhVVr~  124 (391)
T KOG1491|consen   98 ASAGEGLGNKFLSHIRHVDAIFHVVRA  124 (391)
T ss_pred             cccCcCchHHHHHhhhhccceeEEEEe
Confidence                  222344455678998888865

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.82  E-value=3.1e-08  Score=76.52  Aligned_cols=140  Identities=14%  Similarity=0.109  Sum_probs=85.9

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECC
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSN   94 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~   94 (180)
                      ..|-++++||||+||||||..|...........+.=.+..+..+...+.+.++|.+  .. ......+-+|.+++++|.+
T Consensus        68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTflEcp~D--l~-~miDvaKIaDLVlLlIdgn  144 (1077)
T COG5192          68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFLECPSD--LH-QMIDVAKIADLVLLLIDGN  144 (1077)
T ss_pred             CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEEEEeChHH--HH-HHHhHHHhhheeEEEeccc
Confidence            46788899999999999998887543211111111123345557789999999942  22 2334556789999999987


Q ss_pred             ChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC-CHhHHHhHhCCCccCC--cceEEEEeeccC
Q 030289           95 DRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM-SVSEVTDKLGLHSLRQ--RRWYIQAACATS  161 (180)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~  161 (180)
                      -.-..+.+ .+ ..++.++..  ..++-|+|+.|+.... .+....+.+.-.+|..  .++.+|..|...
T Consensus       145 fGfEMETm-EF-Lnil~~HGm--PrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~  210 (1077)
T COG5192         145 FGFEMETM-EF-LNILISHGM--PRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE  210 (1077)
T ss_pred             cCceehHH-HH-HHHHhhcCC--CceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence            33222222 22 223223222  3378889999997643 4555555555555533  467888888654

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.81  E-value=2.2e-08  Score=66.46  Aligned_cols=53  Identities=21%  Similarity=0.353  Sum_probs=37.9

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCc--ccccc--ccceeEEEEEEcCeEEEEEEcCC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNVSFTVWDVGG   69 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~G   69 (180)
                      ....+++++|.+|+|||||+|.+.+...  ....+  |.....  +.. +..+.++||||
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~--~~~-~~~~~liDtPG  154 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE--VKL-DNKIKLLDTPG  154 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEE--EEe-cCCEEEEECCC
Confidence            4678899999999999999999998662  22222  333333  222 24699999999

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.81  E-value=4.6e-09  Score=76.13  Aligned_cols=144  Identities=17%  Similarity=0.149  Sum_probs=89.6

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhc---C----Ccccc----------c--cccceeEEEEEEcCeEEEEEEcCCCCCC
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKL---G----EIVTT----------I--PTIGFNVETVEYKNVSFTVWDVGGQDKI   73 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~---~----~~~~~----------~--~t~~~~~~~~~~~~~~~~i~D~~G~~~~   73 (180)
                      +..++||.-||+...|||||..++..   .    ++..|          .  .|+......+...+..+.=.|+||+..|
T Consensus        51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADY  130 (449)
T KOG0460|consen   51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADY  130 (449)
T ss_pred             CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHH
Confidence            36789999999999999999877752   0    01111          1  1343444444556778889999999988


Q ss_pred             hhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHH-----hHhCCCccC
Q 030289           74 RPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVT-----DKLGLHSLR  148 (180)
Q Consensus        74 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~-----~~~~~~~~~  148 (180)
                      -+....-..+.|++|+|+.++|..- ...++.+. +.+..  .-..+++++||.|+.++.+.-++.     +.+..-.+.
T Consensus       131 IKNMItGaaqMDGaILVVaatDG~M-PQTrEHlL-LArQV--GV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~  206 (449)
T KOG0460|consen  131 IKNMITGAAQMDGAILVVAATDGPM-PQTREHLL-LARQV--GVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFD  206 (449)
T ss_pred             HHHhhcCccccCceEEEEEcCCCCC-cchHHHHH-HHHHc--CCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCC
Confidence            8777777778899999999987432 11222111 11111  123488899999998654432222     222222333


Q ss_pred             CcceEEEEeecc
Q 030289          149 QRRWYIQAACAT  160 (180)
Q Consensus       149 ~~~~~~~~~Sa~  160 (180)
                      .-..|++.=||.
T Consensus       207 Gd~~PvI~GSAL  218 (449)
T KOG0460|consen  207 GDNTPVIRGSAL  218 (449)
T ss_pred             CCCCCeeecchh
Confidence            445677766643

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=98.80  E-value=1.5e-08  Score=73.11  Aligned_cols=149  Identities=19%  Similarity=0.163  Sum_probs=92.8

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC-cc--ccccccceeEEEEEE-cCeEEEEEEcCCCCC---------ChhhHHhh
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE-IV--TTIPTIGFNVETVEY-KNVSFTVWDVGGQDK---------IRPLWRHY   80 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~~--~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~---------~~~~~~~~   80 (180)
                      ....-|.++|=.++|||||+++|..-. ..  ...+|.++....... .+..+-+-||-|--.         |+. +..-
T Consensus       176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~A-TLee  254 (410)
T KOG0410|consen  176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQA-TLEE  254 (410)
T ss_pred             CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHH-HHHH
Confidence            344568899999999999999998544 11  224566655554444 456778889988221         111 2223


Q ss_pred             ccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCe----EEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEE
Q 030289           81 FQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV----LLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQA  156 (180)
Q Consensus        81 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~----iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (180)
                      ...+|.++-|.|+++|+.-+.-...+..+ +.-.-++.|    ++=|=||.|..+....++    ..         .-+.
T Consensus       255 VaeadlllHvvDiShP~ae~q~e~Vl~vL-~~igv~~~pkl~~mieVdnkiD~e~~~~e~E----~n---------~~v~  320 (410)
T KOG0410|consen  255 VAEADLLLHVVDISHPNAEEQRETVLHVL-NQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE----KN---------LDVG  320 (410)
T ss_pred             HhhcceEEEEeecCCccHHHHHHHHHHHH-HhcCCCcHHHHhHHHhhccccccccccCccc----cC---------Cccc
Confidence            34689999999999986533333333333 222222222    355667887665322111    00         1478


Q ss_pred             eeccCCCChHHHHHHHHHHhh
Q 030289          157 ACATSGQGLYEGLDWLSSNVS  177 (180)
Q Consensus       157 ~Sa~~~~~i~~~~~~l~~~~~  177 (180)
                      +|+.+|+|++++...+-.++.
T Consensus       321 isaltgdgl~el~~a~~~kv~  341 (410)
T KOG0410|consen  321 ISALTGDGLEELLKAEETKVA  341 (410)
T ss_pred             cccccCccHHHHHHHHHHHhh
Confidence            899999999999998876653

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.79  E-value=8.6e-09  Score=68.12  Aligned_cols=35  Identities=23%  Similarity=0.340  Sum_probs=28.5

Q ss_pred             hHHHHhhhcccCccEEEEEcCCCCChHHHHHHhhcCC
Q 030289            4 VISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus         4 ~~~~~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      -++.++..++.  -.++++|++|||||||+|+|....
T Consensus        25 g~~~l~~~l~~--k~~vl~G~SGvGKSSLiN~L~~~~   59 (161)
T PF03193_consen   25 GIEELKELLKG--KTSVLLGQSGVGKSSLINALLPEA   59 (161)
T ss_dssp             THHHHHHHHTT--SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CHHHHHHHhcC--CEEEEECCCCCCHHHHHHHHHhhc
Confidence            45666666654  678999999999999999999864

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.78  E-value=2e-08  Score=73.55  Aligned_cols=86  Identities=17%  Similarity=0.159  Sum_probs=59.4

Q ss_pred             hccccCEEEEEEECCChhhHHH-HHHHHHHHhcccccCCCeEEEEEecCCCCCCCC-HhHHHhHhCCCccCCcceEEEEe
Q 030289           80 YFQNTHGLIFVVDSNDRERIGE-AKDELHRMLSEDELREAVLLVFANKQDLPNAMS-VSEVTDKLGLHSLRQRRWYIQAA  157 (180)
Q Consensus        80 ~~~~~~~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  157 (180)
                      ...++|.+++|+|+.++..... +..|+....    ..++|+++|+||+|+.+... ..++...     ....+.+++++
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~----~~~ip~iIVlNK~DL~~~~~~~~~~~~~-----~~~~g~~v~~v  147 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAE----ANGIKPIIVLNKIDLLDDLEEARELLAL-----YRAIGYDVLEL  147 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEhHHcCCCHHHHHHHHHH-----HHHCCCeEEEE
Confidence            3588999999999987765444 355655442    24789999999999963221 1112111     12234689999


Q ss_pred             eccCCCChHHHHHHHHH
Q 030289          158 CATSGQGLYEGLDWLSS  174 (180)
Q Consensus       158 Sa~~~~~i~~~~~~l~~  174 (180)
                      ||+++.|++++++.+..
T Consensus       148 SA~~g~gi~~L~~~l~g  164 (298)
T PRK00098        148 SAKEGEGLDELKPLLAG  164 (298)
T ss_pred             eCCCCccHHHHHhhccC
Confidence            99999999999988753

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.78  E-value=6.2e-09  Score=78.15  Aligned_cols=98  Identities=20%  Similarity=0.220  Sum_probs=63.3

Q ss_pred             CCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC-CHhHHHhHhCCCccC
Q 030289           70 QDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM-SVSEVTDKLGLHSLR  148 (180)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~-~~~~~~~~~~~~~~~  148 (180)
                      ++.|......+.+.++++++|+|+.+...     .|...+...  ..+.|+++|+||+|+.+.. ..+.+.+... ..++
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~-----s~~~~l~~~--~~~~piilV~NK~DLl~k~~~~~~~~~~l~-~~~k  121 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG-----SLIPELKRF--VGGNPVLLVGNKIDLLPKSVNLSKIKEWMK-KRAK  121 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCCC-----CccHHHHHH--hCCCCEEEEEEchhhCCCCCCHHHHHHHHH-HHHH
Confidence            45677788888899999999999975431     122222211  1257899999999986532 2222221110 1111


Q ss_pred             Ccce---EEEEeeccCCCChHHHHHHHHHH
Q 030289          149 QRRW---YIQAACATSGQGLYEGLDWLSSN  175 (180)
Q Consensus       149 ~~~~---~~~~~Sa~~~~~i~~~~~~l~~~  175 (180)
                      ..++   .++.+||+++.|++++++.+.+.
T Consensus       122 ~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       122 ELGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             HcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            2222   48999999999999999998754

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>TIGR00092 GTP-binding protein YchF

Probab=98.76  E-value=7.9e-08  Score=71.64  Aligned_cols=78  Identities=18%  Similarity=0.112  Sum_probs=56.8

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCCc-c--cc-ccccceeEEEEEEcC-----------------eEEEEEEcCCCCC---
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGEI-V--TT-IPTIGFNVETVEYKN-----------------VSFTVWDVGGQDK---   72 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~~-~--~~-~~t~~~~~~~~~~~~-----------------~~~~i~D~~G~~~---   72 (180)
                      ++++++|.|++|||||+|.|++... .  .+ ..|+.+....+.+.+                 ..+.+.|+||-..   
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7899999999999999999987763 2  22 235666666665522                 4689999999433   


Q ss_pred             ----ChhhHHhhccccCEEEEEEECC
Q 030289           73 ----IRPLWRHYFQNTHGLIFVVDSN   94 (180)
Q Consensus        73 ----~~~~~~~~~~~~~~~i~v~d~~   94 (180)
                          ........++++|+++.|++..
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCC
Confidence                2223445678899999999873

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=98.75  E-value=1.2e-08  Score=75.45  Aligned_cols=157  Identities=17%  Similarity=0.164  Sum_probs=99.9

Q ss_pred             hcccCccEEEEEcCCCCChHHHHHHhhcC----------------------------------CccccccccceeEEEEE
Q 030289           11 LFARKEMRILMVGLDAAGKTTILYKLKLG----------------------------------EIVTTIPTIGFNVETVE   56 (180)
Q Consensus        11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~----------------------------------~~~~~~~t~~~~~~~~~   56 (180)
                      ..+..+.|++|+|+..+||||+-..+...                                  +......|++....-+.
T Consensus        74 ~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FE  153 (501)
T KOG0459|consen   74 EYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFE  153 (501)
T ss_pred             CCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEE
Confidence            34688999999999999999997666421                                  01111235556666677


Q ss_pred             EcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCCh---hhHHHH--HHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289           57 YKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDR---ERIGEA--KDELHRMLSEDELREAVLLVFANKQDLPN  131 (180)
Q Consensus        57 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~---~~~~~~--~~~~~~~~~~~~~~~~~iiiv~nK~D~~~  131 (180)
                      .....+.+.|.||+..|-.....-..++|..++|+.+...   ..|+.-  ......+..-  ..-.-+|+++||+|.+.
T Consensus       154 te~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt--~gv~~lVv~vNKMddPt  231 (501)
T KOG0459|consen  154 TENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT--AGVKHLIVLINKMDDPT  231 (501)
T ss_pred             ecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHh--hccceEEEEEEeccCCc
Confidence            7888999999999999877777777889999999987421   122111  1111222111  23345899999999876


Q ss_pred             CC----CHhHHHh----HhCCCcc-CCcceEEEEeeccCCCChHHHH
Q 030289          132 AM----SVSEVTD----KLGLHSL-RQRRWYIQAACATSGQGLYEGL  169 (180)
Q Consensus       132 ~~----~~~~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~~i~~~~  169 (180)
                      ..    ..++...    .+..... ......|+++|..+|.++++..
T Consensus       232 vnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~  278 (501)
T KOG0459|consen  232 VNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT  278 (501)
T ss_pred             cCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence            32    1222221    1111111 1234579999999999988754

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.75  E-value=2.2e-08  Score=74.00  Aligned_cols=55  Identities=20%  Similarity=0.366  Sum_probs=39.4

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCcccccccccee--EEEEEEcCeEEEEEEcCC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKNVSFTVWDVGG   69 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~--~~~~~~~~~~~~i~D~~G   69 (180)
                      ....+++|+|-|+||||||||+|.+.......+.-|..  ...+..+ ..+.++||||
T Consensus       130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~-~~i~LlDtPG  186 (322)
T COG1161         130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLD-DGIYLLDTPG  186 (322)
T ss_pred             ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcC-CCeEEecCCC
Confidence            44688999999999999999999988843333322333  3333332 3489999999

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=98.75  E-value=6.5e-08  Score=71.34  Aligned_cols=153  Identities=20%  Similarity=0.170  Sum_probs=92.7

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCCcc-----------------ccc--cccceeEEEEEE-------------------
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGEIV-----------------TTI--PTIGFNVETVEY-------------------   57 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~~~-----------------~~~--~t~~~~~~~~~~-------------------   57 (180)
                      ..+|+++|...+|||||+--|.+++..                 +..  +.++.++.-|+.                   
T Consensus       133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk  212 (641)
T KOG0463|consen  133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK  212 (641)
T ss_pred             eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence            578999999999999998666543211                 111  122222222221                   


Q ss_pred             ---c-CeEEEEEEcCCCCCChhhHHhhccc--cCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289           58 ---K-NVSFTVWDVGGQDKIRPLWRHYFQN--THGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN  131 (180)
Q Consensus        58 ---~-~~~~~i~D~~G~~~~~~~~~~~~~~--~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~  131 (180)
                         + ---+.++|.+|+++|.+.+-.-..+  .|..++++-++-  .+-...+.+..+.   ..-.+|+.+|.+|+|.++
T Consensus       213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNa--GIiGmTKEHLgLA---LaL~VPVfvVVTKIDMCP  287 (641)
T KOG0463|consen  213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANA--GIIGMTKEHLGLA---LALHVPVFVVVTKIDMCP  287 (641)
T ss_pred             eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccc--cceeccHHhhhhh---hhhcCcEEEEEEeeccCc
Confidence               0 1247899999999998775544443  577777776541  2222222222221   124689999999999988


Q ss_pred             CCCHhHHHh----HhCC---------------------CccCCcceEEEEeeccCCCChHHHHHHHH
Q 030289          132 AMSVSEVTD----KLGL---------------------HSLRQRRWYIQAACATSGQGLYEGLDWLS  173 (180)
Q Consensus       132 ~~~~~~~~~----~~~~---------------------~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  173 (180)
                      ..-+++-.+    .+..                     .+..++-+|+|.+|-.+|+|++.+...+.
T Consensus       288 ANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFLN  354 (641)
T KOG0463|consen  288 ANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFLN  354 (641)
T ss_pred             HHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHHh
Confidence            654443222    1111                     12234567999999999999987765543

>cd01858 NGP_1 NGP-1

Probab=98.73  E-value=8.7e-08  Score=63.75  Aligned_cols=89  Identities=16%  Similarity=0.087  Sum_probs=58.9

Q ss_pred             hhccccCEEEEEEECCChhh--HHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEE
Q 030289           79 HYFQNTHGLIFVVDSNDRER--IGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQA  156 (180)
Q Consensus        79 ~~~~~~~~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (180)
                      ..+.++|++++|+|+.++..  ...+...+..    . ..+.|+++|+||+|+.++....++...+...    ....++.
T Consensus         4 ~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~----~-~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~----~~~~~~~   74 (157)
T cd01858           4 KVIDSSDVVIQVLDARDPMGTRCKHVEEYLKK----E-KPHKHLIFVLNKCDLVPTWVTARWVKILSKE----YPTIAFH   74 (157)
T ss_pred             HhhhhCCEEEEEEECCCCccccCHHHHHHHHh----c-cCCCCEEEEEEchhcCCHHHHHHHHHHHhcC----CcEEEEE
Confidence            35678999999999987532  2222333322    1 2358999999999997543333334343321    1233688


Q ss_pred             eeccCCCChHHHHHHHHHHh
Q 030289          157 ACATSGQGLYEGLDWLSSNV  176 (180)
Q Consensus       157 ~Sa~~~~~i~~~~~~l~~~~  176 (180)
                      +||+++.|++++.+.+.+.+
T Consensus        75 iSa~~~~~~~~L~~~l~~~~   94 (157)
T cd01858          75 ASINNPFGKGSLIQLLRQFS   94 (157)
T ss_pred             eeccccccHHHHHHHHHHHH
Confidence            99999999999999987654

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.72  E-value=5.5e-08  Score=71.60  Aligned_cols=153  Identities=22%  Similarity=0.245  Sum_probs=93.5

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCccc-----------------ccc-------ccceeE--EEEEE----------
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEIVT-----------------TIP-------TIGFNV--ETVEY----------   57 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~-----------------~~~-------t~~~~~--~~~~~----------   57 (180)
                      -...+++++|...+|||||+--|..++...                 ...       +.+++.  ..+++          
T Consensus       165 fievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~  244 (591)
T KOG1143|consen  165 FIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIV  244 (591)
T ss_pred             ceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHH
Confidence            446899999999999999986665322110                 011       122211  11111          


Q ss_pred             --cCeEEEEEEcCCCCCChhhHHhhccc--cCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC
Q 030289           58 --KNVSFTVWDVGGQDKIRPLWRHYFQN--THGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM  133 (180)
Q Consensus        58 --~~~~~~i~D~~G~~~~~~~~~~~~~~--~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~  133 (180)
                        ..--+.++|.+|+.+|...+...+.+  .|.+++++++...-  .+....+..++..   -++|+.++.+|+|+....
T Consensus       245 e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi--~~tTrEHLgl~~A---L~iPfFvlvtK~Dl~~~~  319 (591)
T KOG1143|consen  245 EKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGI--TWTTREHLGLIAA---LNIPFFVLVTKMDLVDRQ  319 (591)
T ss_pred             hhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCC--ccccHHHHHHHHH---hCCCeEEEEEeeccccch
Confidence              11247899999999998887766664  58899999886432  2222222223222   478999999999998764


Q ss_pred             CHhHH----HhHhCCC---------------------ccCCcceEEEEeeccCCCChHHHHHH
Q 030289          134 SVSEV----TDKLGLH---------------------SLRQRRWYIQAACATSGQGLYEGLDW  171 (180)
Q Consensus       134 ~~~~~----~~~~~~~---------------------~~~~~~~~~~~~Sa~~~~~i~~~~~~  171 (180)
                      .++..    ...+...                     .....-.|+|.+|+.+|++++-+...
T Consensus       320 ~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~f  382 (591)
T KOG1143|consen  320 GLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTF  382 (591)
T ss_pred             hHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHH
Confidence            43322    2211111                     11123359999999999998765443

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.70  E-value=7.5e-07  Score=62.72  Aligned_cols=81  Identities=17%  Similarity=0.127  Sum_probs=52.0

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcC--Cccc----cccccceeEEEEEE---cCeEEEEEEcCCCCCC------hhhHHh
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLG--EIVT----TIPTIGFNVETVEY---KNVSFTVWDVGGQDKI------RPLWRH   79 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~--~~~~----~~~t~~~~~~~~~~---~~~~~~i~D~~G~~~~------~~~~~~   79 (180)
                      +-.-|.|+|++++|||+|+|+|.+.  .+..    ...|.|+-......   .+..+.++||+|-...      ......
T Consensus         6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~   85 (224)
T cd01851           6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLF   85 (224)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHH
Confidence            3445779999999999999999988  4221    12355544443333   3578999999995432      111222


Q ss_pred             hccc--cCEEEEEEECCC
Q 030289           80 YFQN--THGLIFVVDSND   95 (180)
Q Consensus        80 ~~~~--~~~~i~v~d~~~   95 (180)
                      .+.-  ++++++..+...
T Consensus        86 ~l~~llss~~i~n~~~~~  103 (224)
T cd01851          86 ALATLLSSVLIYNSWETI  103 (224)
T ss_pred             HHHHHHhCEEEEeccCcc
Confidence            3333  788888777653

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.69  E-value=8e-08  Score=63.79  Aligned_cols=83  Identities=17%  Similarity=0.148  Sum_probs=54.1

Q ss_pred             CEEEEEEECCChhhHHHHHHHHH-HHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCC
Q 030289           85 HGLIFVVDSNDRERIGEAKDELH-RMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQ  163 (180)
Q Consensus        85 ~~~i~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  163 (180)
                      |++++|+|+.++.+..  ..++. ....   ..++|+++|+||+|+.++....++...+..    .....++.+||.++.
T Consensus         1 Dvvl~VvD~~~p~~~~--~~~i~~~~~~---~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~----~~~~~ii~vSa~~~~   71 (155)
T cd01849           1 DVILEVLDARDPLGTR--SPDIERVLIK---EKGKKLILVLNKADLVPKEVLRKWLAYLRH----SYPTIPFKISATNGQ   71 (155)
T ss_pred             CEEEEEEeccCCcccc--CHHHHHHHHh---cCCCCEEEEEechhcCCHHHHHHHHHHHHh----hCCceEEEEeccCCc
Confidence            6899999998764332  22332 2222   246899999999999654322232222211    113468999999999


Q ss_pred             ChHHHHHHHHHHh
Q 030289          164 GLYEGLDWLSSNV  176 (180)
Q Consensus       164 ~i~~~~~~l~~~~  176 (180)
                      |++++.+.+.+..
T Consensus        72 gi~~L~~~i~~~~   84 (155)
T cd01849          72 GIEKKESAFTKQT   84 (155)
T ss_pred             ChhhHHHHHHHHh
Confidence            9999999887653

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.65  E-value=4.6e-09  Score=78.19  Aligned_cols=128  Identities=20%  Similarity=0.133  Sum_probs=91.2

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhhcCC--cc-----c--------------cccccceeEEEEEEcCeEEEEEEcCCC
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLKLGE--IV-----T--------------TIPTIGFNVETVEYKNVSFTVWDVGGQ   70 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~--~~-----~--------------~~~t~~~~~~~~~~~~~~~~i~D~~G~   70 (180)
                      ...+--+|.++.+-.+||||...|++...  ..     .              ...|+--.-.+++.++.++.++||||+
T Consensus        33 ~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpgh  112 (753)
T KOG0464|consen   33 AIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGH  112 (753)
T ss_pred             chhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCc
Confidence            34566789999999999999999997522  10     0              111222334566679999999999999


Q ss_pred             CCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC---CCHhHHHhHhCC
Q 030289           71 DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA---MSVSEVTDKLGL  144 (180)
Q Consensus        71 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~---~~~~~~~~~~~~  144 (180)
                      -.|+-..+++++--|+++.|||.+-.-.-+.+.-|-..     ...++|-+.++||+|....   ..++.+.++++.
T Consensus       113 vdf~leverclrvldgavav~dasagve~qtltvwrqa-----dk~~ip~~~finkmdk~~anfe~avdsi~ekl~a  184 (753)
T KOG0464|consen  113 VDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQA-----DKFKIPAHCFINKMDKLAANFENAVDSIEEKLGA  184 (753)
T ss_pred             ceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhc-----cccCCchhhhhhhhhhhhhhhhhHHHHHHHHhCC
Confidence            99998889999999999999999754333444444322     2357899999999998653   335556655553

>PRK12289 GTPase RsgA; Reviewed

Probab=98.64  E-value=9.3e-08  Score=71.35  Aligned_cols=34  Identities=18%  Similarity=0.286  Sum_probs=25.1

Q ss_pred             HHHHhhhcccCccEEEEEcCCCCChHHHHHHhhcCC
Q 030289            5 ISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus         5 ~~~~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      +..+...+..+  .++|+|++|||||||+|+|.+..
T Consensus       163 I~eL~~~L~~k--i~v~iG~SgVGKSSLIN~L~~~~  196 (352)
T PRK12289        163 LEALLEQLRNK--ITVVAGPSGVGKSSLINRLIPDV  196 (352)
T ss_pred             HHHHhhhhccc--eEEEEeCCCCCHHHHHHHHcCcc
Confidence            34444444332  38999999999999999999765

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.63  E-value=6.5e-08  Score=76.64  Aligned_cols=111  Identities=16%  Similarity=0.173  Sum_probs=76.6

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCC------------cc---ccccccceeEE--EEEE--cCeEEEEEEcCCCCCC
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGE------------IV---TTIPTIGFNVE--TVEY--KNVSFTVWDVGGQDKI   73 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~------------~~---~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~   73 (180)
                      .++.-+++++-+...|||||+..|....            +.   +...|.++...  .+..  +++.+.++|+|||-.|
T Consensus         6 ~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf   85 (887)
T KOG0467|consen    6 SEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDF   85 (887)
T ss_pred             CCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccch
Confidence            4567789999999999999998886432            11   11123343322  2323  7899999999999999


Q ss_pred             hhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCC
Q 030289           74 RPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQD  128 (180)
Q Consensus        74 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D  128 (180)
                      .+......+-+|++++++|+...     .......+++..+..+...++|+||+|
T Consensus        86 ~sevssas~l~d~alvlvdvveg-----v~~qt~~vlrq~~~~~~~~~lvinkid  135 (887)
T KOG0467|consen   86 SSEVSSASRLSDGALVLVDVVEG-----VCSQTYAVLRQAWIEGLKPILVINKID  135 (887)
T ss_pred             hhhhhhhhhhcCCcEEEEeeccc-----cchhHHHHHHHHHHccCceEEEEehhh
Confidence            99999999999999999998632     111111112212223555799999999

>PRK12288 GTPase RsgA; Reviewed

Probab=98.61  E-value=1.3e-07  Score=70.46  Aligned_cols=34  Identities=18%  Similarity=0.355  Sum_probs=25.7

Q ss_pred             HHHHhhhcccCccEEEEEcCCCCChHHHHHHhhcCC
Q 030289            5 ISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus         5 ~~~~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      +..+...+..+  -++|+|.+|||||||+|+|.+..
T Consensus       196 ideL~~~L~~k--i~~~vG~sgVGKSTLiN~Ll~~~  229 (347)
T PRK12288        196 LEELEAALTGR--ISIFVGQSGVGKSSLINALLPEA  229 (347)
T ss_pred             HHHHHHHHhhC--CEEEECCCCCCHHHHHHHhcccc
Confidence            34454444432  37899999999999999999765

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.60  E-value=1.8e-07  Score=72.69  Aligned_cols=113  Identities=17%  Similarity=0.143  Sum_probs=78.3

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC-ccc-------ccc-------------ccceeEEEEEEcCeEEEEEEcCCCCC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE-IVT-------TIP-------------TIGFNVETVEYKNVSFTVWDVGGQDK   72 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~~~-------~~~-------------t~~~~~~~~~~~~~~~~i~D~~G~~~   72 (180)
                      .+.-+|.++-+-.+||||+.++.+.+. ...       ...             |+--....+..++..+.++|||||-.
T Consensus        37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD  116 (721)
T KOG0465|consen   37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD  116 (721)
T ss_pred             hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence            456678899999999999999998643 111       011             11111223344688999999999999


Q ss_pred             ChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289           73 IRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN  131 (180)
Q Consensus        73 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~  131 (180)
                      |-.-.++.++-.|+++++++....-. ......+.+..++    ++|-+.+.||.|...
T Consensus       117 FT~EVeRALrVlDGaVlvl~aV~GVq-sQt~tV~rQ~~ry----~vP~i~FiNKmDRmG  170 (721)
T KOG0465|consen  117 FTFEVERALRVLDGAVLVLDAVAGVE-SQTETVWRQMKRY----NVPRICFINKMDRMG  170 (721)
T ss_pred             EEEEehhhhhhccCeEEEEEccccee-hhhHHHHHHHHhc----CCCeEEEEehhhhcC
Confidence            87778888899999999998764321 2333444454433    788999999999543

>PRK14974 cell division protein FtsY; Provisional

Probab=98.59  E-value=7.4e-07  Score=66.10  Aligned_cols=94  Identities=16%  Similarity=0.129  Sum_probs=52.8

Q ss_pred             CeEEEEEEcCCCCCChhh----HHhhc--cccCEEEEEEECCChh-hHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289           59 NVSFTVWDVGGQDKIRPL----WRHYF--QNTHGLIFVVDSNDRE-RIGEAKDELHRMLSEDELREAVLLVFANKQDLPN  131 (180)
Q Consensus        59 ~~~~~i~D~~G~~~~~~~----~~~~~--~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~  131 (180)
                      +..+.++||+|.......    .....  .+.|.+++|+|+.... .++.. ..+....       .+--+++||.|...
T Consensus       222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a-~~f~~~~-------~~~giIlTKlD~~~  293 (336)
T PRK14974        222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQA-REFNEAV-------GIDGVILTKVDADA  293 (336)
T ss_pred             CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHH-HHHHhcC-------CCCEEEEeeecCCC
Confidence            467999999997653221    11221  2578899999986533 22222 2222111       12478899999865


Q ss_pred             CCCH-hHHHhHhCCCccCCcceEEEEeeccCCCChHHHHH
Q 030289          132 AMSV-SEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLD  170 (180)
Q Consensus       132 ~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  170 (180)
                      .-.. -.+...        .+.|+.+++  +|++++++..
T Consensus       294 ~~G~~ls~~~~--------~~~Pi~~i~--~Gq~v~Dl~~  323 (336)
T PRK14974        294 KGGAALSIAYV--------IGKPILFLG--VGQGYDDLIP  323 (336)
T ss_pred             CccHHHHHHHH--------HCcCEEEEe--CCCChhhccc
Confidence            3221 112222        234677776  7888877653

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.57  E-value=2.4e-06  Score=63.12  Aligned_cols=138  Identities=18%  Similarity=0.232  Sum_probs=74.6

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcC------C--ccc---cc-----------cccceeEEEE-----------------
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLG------E--IVT---TI-----------PTIGFNVETV-----------------   55 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~------~--~~~---~~-----------~t~~~~~~~~-----------------   55 (180)
                      ...-++++|++|+||||++..|...      +  ...   +.           .-.++.+...                 
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~  192 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA  192 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence            4567889999999999999888531      1  000   00           0111111111                 


Q ss_pred             EEcCeEEEEEEcCCCCCChhh----HHhh--------ccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEE
Q 030289           56 EYKNVSFTVWDVGGQDKIRPL----WRHY--------FQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVF  123 (180)
Q Consensus        56 ~~~~~~~~i~D~~G~~~~~~~----~~~~--------~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv  123 (180)
                      ...++.+.++||||.......    ...+        -...+..++|+|++...  +.+.+ .......    -.+--+|
T Consensus       193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~~----~~~~giI  265 (318)
T PRK10416        193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHEA----VGLTGII  265 (318)
T ss_pred             HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHhh----CCCCEEE
Confidence            014568999999996543221    1111        12467889999997432  22222 2222111    1234788


Q ss_pred             EecCCCCCCCC-HhHHHhHhCCCccCCcceEEEEeeccCCCChHHHH
Q 030289          124 ANKQDLPNAMS-VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGL  169 (180)
Q Consensus       124 ~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  169 (180)
                      +||.|....-. .-.+...        .+.|+..++  +|++++++-
T Consensus       266 lTKlD~t~~~G~~l~~~~~--------~~~Pi~~v~--~Gq~~~Dl~  302 (318)
T PRK10416        266 LTKLDGTAKGGVVFAIADE--------LGIPIKFIG--VGEGIDDLQ  302 (318)
T ss_pred             EECCCCCCCccHHHHHHHH--------HCCCEEEEe--CCCChhhCc
Confidence            99999654221 1122222        245677777  778776653

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.56  E-value=2.5e-08  Score=71.52  Aligned_cols=159  Identities=13%  Similarity=0.110  Sum_probs=93.4

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCcccc------ccccceeEE-------------------EEEE-----------
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEIVTT------IPTIGFNVE-------------------TVEY-----------   57 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~------~~t~~~~~~-------------------~~~~-----------   57 (180)
                      +-.+||.-+|+.-.||||++.++++-.....      -.|+...|.                   .+..           
T Consensus        36 QATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~  115 (466)
T KOG0466|consen   36 QATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRP  115 (466)
T ss_pred             eeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccC
Confidence            4578999999999999999988876321110      001111110                   0000           


Q ss_pred             -------cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCC
Q 030289           58 -------KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP  130 (180)
Q Consensus        58 -------~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~  130 (180)
                             --..++++|+||++-.-.....-..-.|++++++..+.........+.+..+ ...  .-..++++-||.|+.
T Consensus       116 g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaav-eiM--~LkhiiilQNKiDli  192 (466)
T KOG0466|consen  116 GCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAV-EIM--KLKHIIILQNKIDLI  192 (466)
T ss_pred             CCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHH-HHh--hhceEEEEechhhhh
Confidence                   0135889999998744333222222348888888876543322222222111 111  113388999999997


Q ss_pred             CCCC-Hh---HHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHHhh
Q 030289          131 NAMS-VS---EVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVS  177 (180)
Q Consensus       131 ~~~~-~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  177 (180)
                      .+.. .+   ++....  ......+.|++++||.-+.||+-+.++++..+.
T Consensus       193 ~e~~A~eq~e~I~kFi--~~t~ae~aPiiPisAQlkyNId~v~eyivkkIP  241 (466)
T KOG0466|consen  193 KESQALEQHEQIQKFI--QGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP  241 (466)
T ss_pred             hHHHHHHHHHHHHHHH--hccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence            7533 22   222221  112234679999999999999999999998764

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.55  E-value=1.7e-07  Score=66.88  Aligned_cols=52  Identities=13%  Similarity=0.124  Sum_probs=34.2

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCCcccc-----------ccccceeEEEEEEcCeEEEEEEcCCCCC
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGEIVTT-----------IPTIGFNVETVEYKNVSFTVWDVGGQDK   72 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~~~~~-----------~~t~~~~~~~~~~~~~~~~i~D~~G~~~   72 (180)
                      -.++++|++|||||||+|+|.+......           +.|.......+  .  ...++||||-..
T Consensus       121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l--~--~~~liDtPG~~~  183 (245)
T TIGR00157       121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF--H--GGLIADTPGFNE  183 (245)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--C--CcEEEeCCCccc
Confidence            4789999999999999999997541111           11233333222  2  237999999543

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.55  E-value=4.9e-07  Score=60.20  Aligned_cols=64  Identities=17%  Similarity=0.247  Sum_probs=37.4

Q ss_pred             CeEEEEEEcCCCCCChhhHHhh--------ccccCEEEEEEECCChhh-HHHHHHHHHHHhcccccCCCeEEEEEecCCC
Q 030289           59 NVSFTVWDVGGQDKIRPLWRHY--------FQNTHGLIFVVDSNDRER-IGEAKDELHRMLSEDELREAVLLVFANKQDL  129 (180)
Q Consensus        59 ~~~~~i~D~~G~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~  129 (180)
                      +.++.++|+||-.+-.......        .-..+.++.++|+.+... +.....+..++..    .   =++++||+|+
T Consensus        86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~----a---d~ivlnk~dl  158 (158)
T cd03112          86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF----A---DRILLNKTDL  158 (158)
T ss_pred             CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH----C---CEEEEecccC
Confidence            3567899999976544333322        224788999999864322 1122223333322    1   2779999996

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.55  E-value=1.3e-07  Score=67.04  Aligned_cols=122  Identities=18%  Similarity=0.264  Sum_probs=76.6

Q ss_pred             hhhcccCccEEEEEcCCCCChHHHHHHhhcCCcccc-----ccccceeEEEEEE----cCeEEEEEEcCC-------CCC
Q 030289            9 KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY----KNVSFTVWDVGG-------QDK   72 (180)
Q Consensus         9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~-----~~t~~~~~~~~~~----~~~~~~i~D~~G-------~~~   72 (180)
                      ++...-=.|||+-+|..|.|||||+..|++..+...     .|++.....++..    -..+++++||.|       .+.
T Consensus        35 ksv~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~S  114 (406)
T KOG3859|consen   35 KSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDS  114 (406)
T ss_pred             HHHhcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccc
Confidence            334444579999999999999999999998763322     3455555544444    235789999999       111


Q ss_pred             C-------hhhHHhhcc---------------ccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCC
Q 030289           73 I-------RPLWRHYFQ---------------NTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP  130 (180)
Q Consensus        73 ~-------~~~~~~~~~---------------~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~  130 (180)
                      |       .+..+.|++               +.|+++|.+.++ ..++..++.....-+.    .++.||-++.|.|..
T Consensus       115 yk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PT-GH~LKslDLvtmk~Ld----skVNIIPvIAKaDti  189 (406)
T KOG3859|consen  115 YKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPT-GHSLKSLDLVTMKKLD----SKVNIIPVIAKADTI  189 (406)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCC-CcchhHHHHHHHHHHh----hhhhhHHHHHHhhhh
Confidence            1       111222221               457888888776 4556666654443333    345678888899976


Q ss_pred             CCCCH
Q 030289          131 NAMSV  135 (180)
Q Consensus       131 ~~~~~  135 (180)
                      ....+
T Consensus       190 sK~eL  194 (406)
T KOG3859|consen  190 SKEEL  194 (406)
T ss_pred             hHHHH
Confidence            64433

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.54  E-value=3.1e-06  Score=55.44  Aligned_cols=147  Identities=18%  Similarity=0.243  Sum_probs=73.1

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEE--cCeEEEEEEcC-C-----------CC---CC----
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY--KNVSFTVWDVG-G-----------QD---KI----   73 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~D~~-G-----------~~---~~----   73 (180)
                      ..+||.+.|+||+||||++.++...-......--|+....++-  .-.-|.+.|+. |           ..   +|    
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v   83 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNV   83 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeH
Confidence            4689999999999999999887632111111111222222222  12334555544 2           00   11    


Q ss_pred             ---h----hhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCc
Q 030289           74 ---R----PLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHS  146 (180)
Q Consensus        74 ---~----~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~  146 (180)
                         .    ...+.+++.+|++  ++|=.-+  .+.....+...+......+.|++.++++.+-.+  -++++... +   
T Consensus        84 ~~le~i~~~al~rA~~~aDvI--IIDEIGp--MElks~~f~~~ve~vl~~~kpliatlHrrsr~P--~v~~ik~~-~---  153 (179)
T COG1618          84 EGLEEIAIPALRRALEEADVI--IIDEIGP--MELKSKKFREAVEEVLKSGKPLIATLHRRSRHP--LVQRIKKL-G---  153 (179)
T ss_pred             HHHHHHhHHHHHHHhhcCCEE--EEecccc--hhhccHHHHHHHHHHhcCCCcEEEEEecccCCh--HHHHhhhc-C---
Confidence               1    1233444455644  4554322  222222222222322335788899888775422  22222221 1   


Q ss_pred             cCCcceEEEEeeccCCCChHHHHHHHHHHhhhc
Q 030289          147 LRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       147 ~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  179 (180)
                          .+.+|    .+.+|=+.++..+.+.|...
T Consensus       154 ----~v~v~----lt~~NR~~i~~~Il~~L~~~  178 (179)
T COG1618         154 ----GVYVF----LTPENRNRILNEILSVLKGE  178 (179)
T ss_pred             ----CEEEE----EccchhhHHHHHHHHHhccC
Confidence                12233    46666678888888877643

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.54  E-value=3.5e-07  Score=59.75  Aligned_cols=78  Identities=9%  Similarity=0.062  Sum_probs=50.0

Q ss_pred             HHhhccccCEEEEEEECCChhhHH--HHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEE
Q 030289           77 WRHYFQNTHGLIFVVDSNDRERIG--EAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYI  154 (180)
Q Consensus        77 ~~~~~~~~~~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (180)
                      ....+.++|++++|+|+.++.+..  .+..++...     ..+.|+++|+||+|+.++....++.+.+.     ..+..+
T Consensus         5 ~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~-----~~~k~~iivlNK~DL~~~~~~~~~~~~~~-----~~~~~i   74 (141)
T cd01857           5 LWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV-----DPRKKNILLLNKADLLTEEQRKAWAEYFK-----KEGIVV   74 (141)
T ss_pred             HHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc-----cCCCcEEEEEechhcCCHHHHHHHHHHHH-----hcCCeE
Confidence            345678899999999998764322  333433322     14689999999999965433333333222     223578


Q ss_pred             EEeeccCCCC
Q 030289          155 QAACATSGQG  164 (180)
Q Consensus       155 ~~~Sa~~~~~  164 (180)
                      +++||.++.+
T Consensus        75 i~iSa~~~~~   84 (141)
T cd01857          75 VFFSALKENA   84 (141)
T ss_pred             EEEEecCCCc
Confidence            9999998764

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd01856 YlqF YlqF

Probab=98.54  E-value=1.9e-07  Score=63.06  Aligned_cols=89  Identities=16%  Similarity=0.091  Sum_probs=57.9

Q ss_pred             hHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEE
Q 030289           76 LWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQ  155 (180)
Q Consensus        76 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (180)
                      .....+.++|.+++|+|+.++..-..  ..+....     .+.|.++|+||+|+.++....++.+.+..     ....++
T Consensus        12 ~~~~~i~~aD~il~v~D~~~~~~~~~--~~i~~~~-----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~-----~~~~vi   79 (171)
T cd01856          12 QIKEKLKLVDLVIEVRDARIPLSSRN--PLLEKIL-----GNKPRIIVLNKADLADPKKTKKWLKYFES-----KGEKVL   79 (171)
T ss_pred             HHHHHHhhCCEEEEEeeccCccCcCC--hhhHhHh-----cCCCEEEEEehhhcCChHHHHHHHHHHHh-----cCCeEE
Confidence            35667788999999999976532111  1111111     34689999999999653222222222111     123689


Q ss_pred             EeeccCCCChHHHHHHHHHHh
Q 030289          156 AACATSGQGLYEGLDWLSSNV  176 (180)
Q Consensus       156 ~~Sa~~~~~i~~~~~~l~~~~  176 (180)
                      .+|++++.|++++.+.+...+
T Consensus        80 ~iSa~~~~gi~~L~~~l~~~l  100 (171)
T cd01856          80 FVNAKSGKGVKKLLKAAKKLL  100 (171)
T ss_pred             EEECCCcccHHHHHHHHHHHH
Confidence            999999999999999988764

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.52  E-value=1.4e-06  Score=74.61  Aligned_cols=111  Identities=17%  Similarity=0.203  Sum_probs=64.4

Q ss_pred             EEEEcCCCCChHHHHHHhhcCCccc----cccccc---eeEEEEEEcCeEEEEEEcCCCC--------CChhhHHhhcc-
Q 030289           19 ILMVGLDAAGKTTILYKLKLGEIVT----TIPTIG---FNVETVEYKNVSFTVWDVGGQD--------KIRPLWRHYFQ-   82 (180)
Q Consensus        19 i~i~G~~~~GKStli~~l~~~~~~~----~~~t~~---~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~-   82 (180)
                      -+|+|++|+||||++++--...+..    ...+.+   .......+ ..+-.++||+|.-        .....|..++. 
T Consensus       114 YlviG~~gsGKtt~l~~sgl~~pl~~~~~~~~~~~~~~t~~c~wwf-~~~avliDtaG~y~~~~~~~~~~~~~W~~fL~~  192 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNSGLKFPLAERLGAAALRGVGGTRNCDWWF-TDEAVLIDTAGRYTTQDSDPEEDAAAWLGFLGL  192 (1169)
T ss_pred             EEEECCCCCchhHHHHhCCCCCcCchhhccccccCCCCCcccceEe-cCCEEEEcCCCccccCCCcccccHHHHHHHHHH
Confidence            5899999999999998762222111    011111   11111111 2345699999921        22334555553 


Q ss_pred             --------ccCEEEEEEECCC-----hhhH----HHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289           83 --------NTHGLIFVVDSND-----RERI----GEAKDELHRMLSEDELREAVLLVFANKQDLPN  131 (180)
Q Consensus        83 --------~~~~~i~v~d~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~  131 (180)
                              ..+++|+++|+.+     ++..    ..+...+.++... .....|+.+++||||+..
T Consensus       193 L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~-lg~~~PVYvv~Tk~Dll~  257 (1169)
T TIGR03348       193 LRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQ-LGARFPVYLVLTKADLLA  257 (1169)
T ss_pred             HHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHH-hCCCCCEEEEEecchhhc
Confidence                    3699999999753     2222    2333344444332 345799999999999875

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.52  E-value=8.9e-07  Score=62.32  Aligned_cols=81  Identities=20%  Similarity=0.163  Sum_probs=55.9

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCC--cccccc-ccceeEEEEEEcCeEEEEEEcCCCCCC-------hhhHHhhccccCE
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGE--IVTTIP-TIGFNVETVEYKNVSFTVWDVGGQDKI-------RPLWRHYFQNTHG   86 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~--~~~~~~-t~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~~~~   86 (180)
                      -+|.++|-|.+||||++..+.+..  ...+.- |.-.-...+++++.++++-|.||--+-       ........+-|+.
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnl  139 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNL  139 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccE
Confidence            389999999999999999998766  223322 333334455678889999999993321       1123334466899


Q ss_pred             EEEEEECCChh
Q 030289           87 LIFVVDSNDRE   97 (180)
Q Consensus        87 ~i~v~d~~~~~   97 (180)
                      +++|.|+..+-
T Consensus       140 i~~vld~~kp~  150 (358)
T KOG1487|consen  140 IFIVLDVLKPL  150 (358)
T ss_pred             EEEEeeccCcc
Confidence            99999986553

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.49  E-value=7.7e-07  Score=64.67  Aligned_cols=91  Identities=13%  Similarity=0.065  Sum_probs=60.5

Q ss_pred             hhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEE
Q 030289           75 PLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYI  154 (180)
Q Consensus        75 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (180)
                      ......+.++|++++|+|+..+.+-.  ...+...+     .+.|+++|+||+|+.+......+.+.+..     .+.++
T Consensus        13 ~~~~~~l~~aDvVl~V~Dar~p~~~~--~~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~-----~~~~v   80 (276)
T TIGR03596        13 REIKEKLKLVDVVIEVLDARIPLSSR--NPMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFEE-----KGIKA   80 (276)
T ss_pred             HHHHHHHhhCCEEEEEEeCCCCCCCC--ChhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHHH-----cCCeE
Confidence            34566778899999999997653211  12222222     25789999999999653222333222211     23468


Q ss_pred             EEeeccCCCChHHHHHHHHHHhh
Q 030289          155 QAACATSGQGLYEGLDWLSSNVS  177 (180)
Q Consensus       155 ~~~Sa~~~~~i~~~~~~l~~~~~  177 (180)
                      +.+|++++.|++++.+.+.+.+.
T Consensus        81 i~iSa~~~~gi~~L~~~i~~~~~  103 (276)
T TIGR03596        81 LAINAKKGKGVKKIIKAAKKLLK  103 (276)
T ss_pred             EEEECCCcccHHHHHHHHHHHHH
Confidence            99999999999999998887654

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.49  E-value=2.6e-06  Score=61.69  Aligned_cols=94  Identities=12%  Similarity=0.146  Sum_probs=53.4

Q ss_pred             cCeEEEEEEcCCCCCChhhHH-------hhc-----cccCEEEEEEECCCh-hhHHHHHHHHHHHhcccccCCCeEEEEE
Q 030289           58 KNVSFTVWDVGGQDKIRPLWR-------HYF-----QNTHGLIFVVDSNDR-ERIGEAKDELHRMLSEDELREAVLLVFA  124 (180)
Q Consensus        58 ~~~~~~i~D~~G~~~~~~~~~-------~~~-----~~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiiv~  124 (180)
                      .++.+.++||||.........       ...     ..+|.+++|+|++.. +.+...    ..+....    -+.-+|+
T Consensus       153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~----~~f~~~~----~~~g~Il  224 (272)
T TIGR00064       153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA----KVFNEAV----GLTGIIL  224 (272)
T ss_pred             CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH----HHHHhhC----CCCEEEE
Confidence            457899999999765433211       111     137899999999743 222222    2222111    1357889


Q ss_pred             ecCCCCCCCC-HhHHHhHhCCCccCCcceEEEEeeccCCCChHHHH
Q 030289          125 NKQDLPNAMS-VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGL  169 (180)
Q Consensus       125 nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  169 (180)
                      ||.|...... .-.+....        +.|+.+++  +|++++++-
T Consensus       225 TKlDe~~~~G~~l~~~~~~--------~~Pi~~~~--~Gq~~~dl~  260 (272)
T TIGR00064       225 TKLDGTAKGGIILSIAYEL--------KLPIKFIG--VGEKIDDLA  260 (272)
T ss_pred             EccCCCCCccHHHHHHHHH--------CcCEEEEe--CCCChHhCc
Confidence            9999865332 11222222        34677776  777776654

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.45  E-value=3.8e-06  Score=64.13  Aligned_cols=109  Identities=21%  Similarity=0.185  Sum_probs=61.3

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhc------CC--ccc---ccc-----------ccceeEEEEEE----------------
Q 030289           16 EMRILMVGLDAAGKTTILYKLKL------GE--IVT---TIP-----------TIGFNVETVEY----------------   57 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~------~~--~~~---~~~-----------t~~~~~~~~~~----------------   57 (180)
                      ..-|+++|++||||||++.+|..      .+  ...   +.+           -.++.+.....                
T Consensus       100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~  179 (429)
T TIGR01425       100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK  179 (429)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence            45688999999999999988852      12  111   100           11111111110                


Q ss_pred             -cCeEEEEEEcCCCCCChhhH----Hhh--ccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCC
Q 030289           58 -KNVSFTVWDVGGQDKIRPLW----RHY--FQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP  130 (180)
Q Consensus        58 -~~~~~~i~D~~G~~~~~~~~----~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~  130 (180)
                       .++.+.++||||........    ..+  ..+.+.+++|+|+.....-......+...       -.+--+|+||.|..
T Consensus       180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~-------~~~~g~IlTKlD~~  252 (429)
T TIGR01425       180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDS-------VDVGSVIITKLDGH  252 (429)
T ss_pred             hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhc-------cCCcEEEEECccCC
Confidence             25789999999966543221    111  12467899999986432222222222211       12457889999975


Q ss_pred             C
Q 030289          131 N  131 (180)
Q Consensus       131 ~  131 (180)
                      .
T Consensus       253 a  253 (429)
T TIGR01425       253 A  253 (429)
T ss_pred             C
Confidence            4

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.44  E-value=4.2e-07  Score=68.40  Aligned_cols=55  Identities=16%  Similarity=0.347  Sum_probs=35.6

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCCc-------cccccccceeEEEEEEcCeEEEEEEcCCCC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGEI-------VTTIPTIGFNVETVEYKNVSFTVWDVGGQD   71 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~~-------~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~   71 (180)
                      ..++.++|.+|||||||+|+|+....       ....|.+......+.. +..+.++||||-.
T Consensus       154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~-~~~~~l~DtPG~~  215 (360)
T TIGR03597       154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL-DDGHSLYDTPGII  215 (360)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe-CCCCEEEECCCCC
Confidence            46999999999999999999987431       1112211122222332 2346799999954

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK13796 GTPase YqeH; Provisional

Probab=98.43  E-value=7.5e-07  Score=67.14  Aligned_cols=55  Identities=15%  Similarity=0.311  Sum_probs=35.3

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCC-------ccccccccceeEEEEEEcCeEEEEEEcCCC
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGE-------IVTTIPTIGFNVETVEYKNVSFTVWDVGGQ   70 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~-------~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~   70 (180)
                      ...++.++|.+|||||||+|+|....       .....|.+......+...+ ...++||||-
T Consensus       159 ~~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~-~~~l~DTPGi  220 (365)
T PRK13796        159 EGRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDD-GSFLYDTPGI  220 (365)
T ss_pred             CCCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCC-CcEEEECCCc
Confidence            35689999999999999999998542       1122232222223333322 2479999995

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.38  E-value=1.4e-06  Score=63.69  Aligned_cols=33  Identities=21%  Similarity=0.321  Sum_probs=25.6

Q ss_pred             HHHhhhcccCccEEEEEcCCCCChHHHHHHhhcCC
Q 030289            6 SRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus         6 ~~~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      ..+...+.  .-.++++|++|+|||||+|.|.+..
T Consensus       153 ~~L~~~L~--~k~~~~~G~sg~GKSTlin~l~~~~  185 (287)
T cd01854         153 DELREYLK--GKTSVLVGQSGVGKSTLINALLPDL  185 (287)
T ss_pred             HHHHhhhc--cceEEEECCCCCCHHHHHHHHhchh
Confidence            34444443  2579999999999999999998765

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.37  E-value=1.4e-06  Score=63.98  Aligned_cols=34  Identities=29%  Similarity=0.396  Sum_probs=25.9

Q ss_pred             HHHHhhhcccCccEEEEEcCCCCChHHHHHHhhcCC
Q 030289            5 ISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus         5 ~~~~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      +..+...++  ...++++|++|||||||+|.|.+..
T Consensus       155 i~~L~~~l~--gk~~~~~G~sgvGKStlin~l~~~~  188 (298)
T PRK00098        155 LDELKPLLA--GKVTVLAGQSGVGKSTLLNALAPDL  188 (298)
T ss_pred             HHHHHhhcc--CceEEEECCCCCCHHHHHHHHhCCc
Confidence            344444443  4578999999999999999998755

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.37  E-value=1.3e-06  Score=63.20  Aligned_cols=34  Identities=26%  Similarity=0.381  Sum_probs=26.9

Q ss_pred             HHHHhhhcccCccEEEEEcCCCCChHHHHHHhhcCC
Q 030289            5 ISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus         5 ~~~~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      +..+...++.+  -.+++|++|||||||+|+|....
T Consensus       155 ~~~l~~~l~~~--~svl~GqSGVGKSSLiN~L~p~~  188 (301)
T COG1162         155 LEELAELLAGK--ITVLLGQSGVGKSTLINALLPEL  188 (301)
T ss_pred             HHHHHHHhcCC--eEEEECCCCCcHHHHHHhhCchh
Confidence            45566666554  78899999999999999998643

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.34  E-value=2.4e-06  Score=62.45  Aligned_cols=90  Identities=16%  Similarity=0.124  Sum_probs=59.9

Q ss_pred             hHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEE
Q 030289           76 LWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQ  155 (180)
Q Consensus        76 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (180)
                      .....+..+|++++|+|+.++.+..  ..++....     .+.|.++|+||+|+.+......+...+.     ..+.+++
T Consensus        17 ~l~~~l~~aDvIL~VvDar~p~~~~--~~~l~~~~-----~~kp~iiVlNK~DL~~~~~~~~~~~~~~-----~~~~~vi   84 (287)
T PRK09563         17 EIKENLKLVDVVIEVLDARIPLSSE--NPMIDKII-----GNKPRLLILNKSDLADPEVTKKWIEYFE-----EQGIKAL   84 (287)
T ss_pred             HHHHHhhhCCEEEEEEECCCCCCCC--ChhHHHHh-----CCCCEEEEEEchhcCCHHHHHHHHHHHH-----HcCCeEE
Confidence            3566778899999999997653311  12233332     2578999999999965322223322221     1134689


Q ss_pred             EeeccCCCChHHHHHHHHHHhh
Q 030289          156 AACATSGQGLYEGLDWLSSNVS  177 (180)
Q Consensus       156 ~~Sa~~~~~i~~~~~~l~~~~~  177 (180)
                      .+|++++.|++++.+.+.+.+.
T Consensus        85 ~vSa~~~~gi~~L~~~l~~~l~  106 (287)
T PRK09563         85 AINAKKGQGVKKILKAAKKLLK  106 (287)
T ss_pred             EEECCCcccHHHHHHHHHHHHH
Confidence            9999999999999998877654

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.31  E-value=1.9e-06  Score=59.33  Aligned_cols=108  Identities=19%  Similarity=0.206  Sum_probs=59.5

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCC--------cc---cc-----------ccccceeEEEEE-----------------E
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGE--------IV---TT-----------IPTIGFNVETVE-----------------Y   57 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~--------~~---~~-----------~~t~~~~~~~~~-----------------~   57 (180)
                      .-|+++|++||||||.+-+|...-        ..   .+           ....++......                 .
T Consensus         2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~   81 (196)
T PF00448_consen    2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK   81 (196)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence            357899999999999997775321        00   00           001222221111                 1


Q ss_pred             cCeEEEEEEcCCCCCChhh----HHhhcc--ccCEEEEEEECCCh-hhHHHHHHHHHHHhcccccCCCeEEEEEecCCCC
Q 030289           58 KNVSFTVWDVGGQDKIRPL----WRHYFQ--NTHGLIFVVDSNDR-ERIGEAKDELHRMLSEDELREAVLLVFANKQDLP  130 (180)
Q Consensus        58 ~~~~~~i~D~~G~~~~~~~----~~~~~~--~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~  130 (180)
                      ++.++.++||+|.......    ...++.  ..+-+++|.+++.. +.+.........+       + +--+++||.|..
T Consensus        82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~-------~-~~~lIlTKlDet  153 (196)
T PF00448_consen   82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF-------G-IDGLILTKLDET  153 (196)
T ss_dssp             TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS-------S-TCEEEEESTTSS
T ss_pred             cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc-------c-CceEEEEeecCC
Confidence            3467999999997765432    222222  46789999998743 3333222322221       1 125669999976


Q ss_pred             CC
Q 030289          131 NA  132 (180)
Q Consensus       131 ~~  132 (180)
                      ..
T Consensus       154 ~~  155 (196)
T PF00448_consen  154 AR  155 (196)
T ss_dssp             ST
T ss_pred             CC
Confidence            53

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=98.29  E-value=1.6e-05  Score=58.77  Aligned_cols=131  Identities=20%  Similarity=0.238  Sum_probs=72.1

Q ss_pred             EEEEcCCCCChHHHHHHhhcCCcccccc-------cc--------------------ceeEEEEEE-------------c
Q 030289           19 ILMVGLDAAGKTTILYKLKLGEIVTTIP-------TI--------------------GFNVETVEY-------------K   58 (180)
Q Consensus        19 i~i~G~~~~GKStli~~l~~~~~~~~~~-------t~--------------------~~~~~~~~~-------------~   58 (180)
                      .++-|--|||||||+|+++.+......+       .+                    |+--.+++.             +
T Consensus         4 tvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~~   83 (323)
T COG0523           4 TVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRRD   83 (323)
T ss_pred             EEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhccC
Confidence            4678899999999999998654211111       11                    111112111             2


Q ss_pred             CeEEEEEEcCCCCCChhhHHhhcc--------ccCEEEEEEECCChhh-HHHHHH-HHHHHhcccccCCCeEEEEEecCC
Q 030289           59 NVSFTVWDVGGQDKIRPLWRHYFQ--------NTHGLIFVVDSNDRER-IGEAKD-ELHRMLSEDELREAVLLVFANKQD  128 (180)
Q Consensus        59 ~~~~~i~D~~G~~~~~~~~~~~~~--------~~~~~i~v~d~~~~~~-~~~~~~-~~~~~~~~~~~~~~~iiiv~nK~D  128 (180)
                      .....++++.|--.-......+..        ..|+++-|+|+.+-.. +..... ...++ ..      .=++++||+|
T Consensus        84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qi-a~------AD~ivlNK~D  156 (323)
T COG0523          84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQL-AF------ADVIVLNKTD  156 (323)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHH-Hh------CcEEEEeccc
Confidence            346778888884443333332222        2478999999875322 221222 22232 11      1389999999


Q ss_pred             CCCCCCHhHHHhHhCCCccCCcceEEEEeec
Q 030289          129 LPNAMSVSEVTDKLGLHSLRQRRWYIQAACA  159 (180)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (180)
                      +.++...+.+...+...   +..++++.++.
T Consensus       157 lv~~~~l~~l~~~l~~l---np~A~i~~~~~  184 (323)
T COG0523         157 LVDAEELEALEARLRKL---NPRARIIETSY  184 (323)
T ss_pred             CCCHHHHHHHHHHHHHh---CCCCeEEEccc
Confidence            99876555444443322   23456777776

>PRK13796 GTPase YqeH; Provisional

Probab=98.29  E-value=3.4e-06  Score=63.67  Aligned_cols=95  Identities=21%  Similarity=0.195  Sum_probs=55.3

Q ss_pred             ChhhHHhhccccC-EEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC-HhHHHhHhCCCccCCc
Q 030289           73 IRPLWRHYFQNTH-GLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS-VSEVTDKLGLHSLRQR  150 (180)
Q Consensus        73 ~~~~~~~~~~~~~-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~  150 (180)
                      +....... ...+ .+++|+|+.+..  ......+..+.     .+.|+++|+||+|+.+... .+.+... .....+..
T Consensus        59 ~~~~l~~i-~~~~~lIv~VVD~~D~~--~s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~-l~~~~k~~  129 (365)
T PRK13796         59 FLKLLNGI-GDSDALVVNVVDIFDFN--GSWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNW-LRQEAKEL  129 (365)
T ss_pred             HHHHHHhh-cccCcEEEEEEECccCC--CchhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHH-HHHHHHhc
Confidence            33433333 3444 899999987632  11222222221     2578999999999965321 2222111 00111112


Q ss_pred             ce---EEEEeeccCCCChHHHHHHHHHHh
Q 030289          151 RW---YIQAACATSGQGLYEGLDWLSSNV  176 (180)
Q Consensus       151 ~~---~~~~~Sa~~~~~i~~~~~~l~~~~  176 (180)
                      ++   .++.+||+++.|++++++.+.+..
T Consensus       130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~~  158 (365)
T PRK13796        130 GLRPVDVVLISAQKGHGIDELLEAIEKYR  158 (365)
T ss_pred             CCCcCcEEEEECCCCCCHHHHHHHHHHhc
Confidence            22   589999999999999999997653

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.28  E-value=3.5e-05  Score=59.95  Aligned_cols=81  Identities=16%  Similarity=0.298  Sum_probs=51.6

Q ss_pred             eEEEEEEcCCC-------------CCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEec
Q 030289           60 VSFTVWDVGGQ-------------DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANK  126 (180)
Q Consensus        60 ~~~~i~D~~G~-------------~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK  126 (180)
                      -.+.++|.||-             +....+...+..+.+++|+|+---   +.+.-..-..++.......+..-|+|++|
T Consensus       412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG---SVDAERSnVTDLVsq~DP~GrRTIfVLTK  488 (980)
T KOG0447|consen  412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG---SVDAERSIVTDLVSQMDPHGRRTIFVLTK  488 (980)
T ss_pred             ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC---CcchhhhhHHHHHHhcCCCCCeeEEEEee
Confidence            36889999991             112456788889999999999321   12222223333434334456778999999


Q ss_pred             CCCCCC--CCHhHHHhHhC
Q 030289          127 QDLPNA--MSVSEVTDKLG  143 (180)
Q Consensus       127 ~D~~~~--~~~~~~~~~~~  143 (180)
                      .|+.+.  .+++.+.+.+.
T Consensus       489 VDlAEknlA~PdRI~kIle  507 (980)
T KOG0447|consen  489 VDLAEKNVASPSRIQQIIE  507 (980)
T ss_pred             cchhhhccCCHHHHHHHHh
Confidence            999764  35666665543

>PRK01889 GTPase RsgA; Reviewed

Probab=98.27  E-value=8.2e-06  Score=61.38  Aligned_cols=84  Identities=20%  Similarity=0.160  Sum_probs=55.7

Q ss_pred             ccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeecc
Q 030289           81 FQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACAT  160 (180)
Q Consensus        81 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  160 (180)
                      ..++|.+++|+++..+-....+..++....    ..+++.++|+||+|+.++.  ++..+.+...   ..+.+++.+|++
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~----~~~i~piIVLNK~DL~~~~--~~~~~~~~~~---~~g~~Vi~vSa~  180 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALAW----ESGAEPVIVLTKADLCEDA--EEKIAEVEAL---APGVPVLAVSAL  180 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHHH----HcCCCEEEEEEChhcCCCH--HHHHHHHHHh---CCCCcEEEEECC
Confidence            468899999999964333334444444432    2466778999999997642  1111111111   335689999999


Q ss_pred             CCCChHHHHHHHH
Q 030289          161 SGQGLYEGLDWLS  173 (180)
Q Consensus       161 ~~~~i~~~~~~l~  173 (180)
                      ++.|++++..++.
T Consensus       181 ~g~gl~~L~~~L~  193 (356)
T PRK01889        181 DGEGLDVLAAWLS  193 (356)
T ss_pred             CCccHHHHHHHhh
Confidence            9999999988874

>cd03114 ArgK-like The function of this protein family is unkown

Probab=98.27  E-value=1.6e-05  Score=52.33  Aligned_cols=58  Identities=16%  Similarity=0.111  Sum_probs=35.4

Q ss_pred             CeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCC
Q 030289           59 NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQD  128 (180)
Q Consensus        59 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D  128 (180)
                      ++.+.++||+|...   ....++..+|-++++..++--+...-.+-  ..       ....-++++||.|
T Consensus        91 ~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~D~y~~~k~--~~-------~~~~~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAGDDIQAIKA--GI-------MEIADIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCchhHHHHhhh--hH-------hhhcCEEEEeCCC
Confidence            56899999988542   22347788999999987752222111111  11       1223488899987

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.26  E-value=1.4e-05  Score=60.19  Aligned_cols=118  Identities=14%  Similarity=0.184  Sum_probs=64.3

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCc-c---ccc--cc------------------cceeEEEEE-----------Ec
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEI-V---TTI--PT------------------IGFNVETVE-----------YK   58 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~-~---~~~--~t------------------~~~~~~~~~-----------~~   58 (180)
                      .+.-.++++|++|+||||++.+|...-. .   ...  -+                  .++....+.           ..
T Consensus       135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~  214 (374)
T PRK14722        135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR  214 (374)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc
Confidence            4466889999999999999988864210 0   000  01                  111121111           13


Q ss_pred             CeEEEEEEcCCCCCChhhHHh---hcc---ccCEEEEEEECCC-hhhHHHHHHHHHHHhcccccCC-CeEEEEEecCCCC
Q 030289           59 NVSFTVWDVGGQDKIRPLWRH---YFQ---NTHGLIFVVDSND-RERIGEAKDELHRMLSEDELRE-AVLLVFANKQDLP  130 (180)
Q Consensus        59 ~~~~~i~D~~G~~~~~~~~~~---~~~---~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~-~~iiiv~nK~D~~  130 (180)
                      +..+.++||+|....+.....   .+.   ...-.++|++++. .+.+....+.+..........- .+--+|+||.|-.
T Consensus       215 ~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt  294 (374)
T PRK14722        215 NKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEA  294 (374)
T ss_pred             CCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccC
Confidence            568999999997755433211   122   2345688998875 4444444444443321110000 1235777999976


Q ss_pred             C
Q 030289          131 N  131 (180)
Q Consensus       131 ~  131 (180)
                      .
T Consensus       295 ~  295 (374)
T PRK14722        295 S  295 (374)
T ss_pred             C
Confidence            5

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=98.22  E-value=1.7e-06  Score=66.16  Aligned_cols=53  Identities=23%  Similarity=0.254  Sum_probs=41.7

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCCccccccccc--eeEEEEEEcCeEEEEEEcCC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEYKNVSFTVWDVGG   69 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~--~~~~~~~~~~~~~~i~D~~G   69 (180)
                      ...|+++|=|||||||+||.|.+.+.+....|-|  -.+.++.+. -.+.+.|+||
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls-~~v~LCDCPG  368 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS-PSVCLCDCPG  368 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC-CCceecCCCC
Confidence            5889999999999999999999999665555555  344555443 3688999999

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=98.21  E-value=1.7e-05  Score=59.66  Aligned_cols=109  Identities=17%  Similarity=0.211  Sum_probs=62.7

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCCc-ccccc-----ccc------------------eeEEEEE-----------EcCe
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGEI-VTTIP-----TIG------------------FNVETVE-----------YKNV   60 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~-----t~~------------------~~~~~~~-----------~~~~   60 (180)
                      +-.|+++||.||||||.+-.|...-. .....     |++                  +....+.           ..++
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~  282 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC  282 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence            77889999999999999877753221 11111     111                  1111111           1456


Q ss_pred             EEEEEEcCCCCCChhh----HHhhcccc--CEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289           61 SFTVWDVGGQDKIRPL----WRHYFQNT--HGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN  131 (180)
Q Consensus        61 ~~~i~D~~G~~~~~~~----~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~  131 (180)
                      ++.++||.|...++..    ...++.-+  .-+.+|++++..  .+.+...+..+....     .--+++||.|-..
T Consensus       283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~~-----i~~~I~TKlDET~  352 (407)
T COG1419         283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLFP-----IDGLIFTKLDETT  352 (407)
T ss_pred             CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccCC-----cceeEEEcccccC
Confidence            8999999998876543    33343332  345677777633  234455555542211     1246789999765

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=98.19  E-value=1.2e-05  Score=55.05  Aligned_cols=113  Identities=15%  Similarity=0.203  Sum_probs=59.7

Q ss_pred             eEEEEEEcCCCCCChh---hHHhhc---cc---cCEEEEEEECC---Ch-hhHHHHHHHHHHHhcccccCCCeEEEEEec
Q 030289           60 VSFTVWDVGGQDKIRP---LWRHYF---QN---THGLIFVVDSN---DR-ERIGEAKDELHRMLSEDELREAVLLVFANK  126 (180)
Q Consensus        60 ~~~~i~D~~G~~~~~~---~~~~~~---~~---~~~~i~v~d~~---~~-~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK  126 (180)
                      -.+-++|+|||-+.-.   ..+...   ++   --++++++|+.   +. .=+.+...-+...+.    -.+|-|=|++|
T Consensus        98 ddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~----lE~P~INvlsK  173 (273)
T KOG1534|consen   98 DDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMIS----LEVPHINVLSK  173 (273)
T ss_pred             CCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHH----hcCcchhhhhH
Confidence            4689999999876421   122221   11   23567777764   11 111222222222222    35788999999


Q ss_pred             CCCCCCCCHhHHHhHhCCC--------------------------ccCCc-ceEEEEeeccCCCChHHHHHHHHHHh
Q 030289          127 QDLPNAMSVSEVTDKLGLH--------------------------SLRQR-RWYIQAACATSGQGLYEGLDWLSSNV  176 (180)
Q Consensus       127 ~D~~~~~~~~~~~~~~~~~--------------------------~~~~~-~~~~~~~Sa~~~~~i~~~~~~l~~~~  176 (180)
                      .|+.......++...+...                          ..... -..|++....+.++|+.++..|-.++
T Consensus       174 MDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~ai  250 (273)
T KOG1534|consen  174 MDLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAI  250 (273)
T ss_pred             HHHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHH
Confidence            9987653333322221100                          00111 23677777777777887777765544

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.16  E-value=1.8e-05  Score=59.74  Aligned_cols=112  Identities=19%  Similarity=0.252  Sum_probs=61.6

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcC------C--cccc--------------ccccceeEEEEEE--------------
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLG------E--IVTT--------------IPTIGFNVETVEY--------------   57 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~------~--~~~~--------------~~t~~~~~~~~~~--------------   57 (180)
                      .+...|+++|++|+||||++..|...      +  ....              ....++.......              
T Consensus       239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~  318 (436)
T PRK11889        239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE  318 (436)
T ss_pred             cCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhc
Confidence            34568999999999999999888531      0  0000              0011111111110              


Q ss_pred             cCeEEEEEEcCCCCCChhh----HHhhcc--ccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289           58 KNVSFTVWDVGGQDKIRPL----WRHYFQ--NTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN  131 (180)
Q Consensus        58 ~~~~~~i~D~~G~~~~~~~----~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~  131 (180)
                      .+..+.++||+|.......    ...++.  ..+.+++|+|++...  ..+...+..+...     ..--+++||.|-..
T Consensus       319 ~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~~-----~idglI~TKLDET~  391 (436)
T PRK11889        319 ARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKDI-----HIDGIVFTKFDETA  391 (436)
T ss_pred             cCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcCC-----CCCEEEEEcccCCC
Confidence            1358999999996553221    222222  346788999875321  2333333333211     12367899999766


Q ss_pred             C
Q 030289          132 A  132 (180)
Q Consensus       132 ~  132 (180)
                      .
T Consensus       392 k  392 (436)
T PRK11889        392 S  392 (436)
T ss_pred             C
Confidence            3

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.12  E-value=0.00011  Score=55.75  Aligned_cols=23  Identities=26%  Similarity=0.369  Sum_probs=20.1

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhc
Q 030289           16 EMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      .+=|.++||..+||||||.||..
T Consensus        17 dIYiGVVGPVRTGKSTFIKRFMe   39 (492)
T PF09547_consen   17 DIYIGVVGPVRTGKSTFIKRFME   39 (492)
T ss_pred             ceEEEeecCcccCchhHHHHHHH
Confidence            45689999999999999999953

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.11  E-value=4.5e-05  Score=51.52  Aligned_cols=66  Identities=17%  Similarity=0.156  Sum_probs=38.1

Q ss_pred             CeEEEEEEcCCCCCChhh----HHhhc--cccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289           59 NVSFTVWDVGGQDKIRPL----WRHYF--QNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN  131 (180)
Q Consensus        59 ~~~~~i~D~~G~~~~~~~----~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~  131 (180)
                      +..+.++|+||.......    ...+.  ...+.+++|+|+.....   ..+....+....   + ..-+|.||.|...
T Consensus        82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~---~-~~~viltk~D~~~  153 (173)
T cd03115          82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL---G-ITGVILTKLDGDA  153 (173)
T ss_pred             CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC---C-CCEEEEECCcCCC
Confidence            456899999997543221    11111  24899999999864432   223333332221   1 2567779999765

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK13695 putative NTPase; Provisional

Probab=98.06  E-value=0.00017  Score=48.82  Aligned_cols=21  Identities=38%  Similarity=0.608  Sum_probs=19.0

Q ss_pred             cEEEEEcCCCCChHHHHHHhh
Q 030289           17 MRILMVGLDAAGKTTILYKLK   37 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~   37 (180)
                      +||++.|++|+|||||+..+.
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~   21 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIA   21 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            589999999999999998864

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.06  E-value=3.2e-05  Score=60.41  Aligned_cols=111  Identities=21%  Similarity=0.296  Sum_probs=60.5

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcC--------C--cccc---c-----------cccceeEEEEE-----------Ec
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLG--------E--IVTT---I-----------PTIGFNVETVE-----------YK   58 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~--------~--~~~~---~-----------~t~~~~~~~~~-----------~~   58 (180)
                      ...-.++|+|++|+||||++..|...        +  ....   .           ...++......           ..
T Consensus       348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~  427 (559)
T PRK12727        348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR  427 (559)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc
Confidence            44678899999999999999888641        1  1110   0           00111111111           13


Q ss_pred             CeEEEEEEcCCCCCChhhHHh---hcc--ccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289           59 NVSFTVWDVGGQDKIRPLWRH---YFQ--NTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN  131 (180)
Q Consensus        59 ~~~~~i~D~~G~~~~~~~~~~---~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~  131 (180)
                      +.++.++||+|..........   .+.  .....++|++...  +...+...+..+..     ..+.-+|+||.|...
T Consensus       428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~-----~~~~gvILTKlDEt~  498 (559)
T PRK12727        428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH-----AKPQGVVLTKLDETG  498 (559)
T ss_pred             cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh-----hCCeEEEEecCcCcc
Confidence            568999999996544322111   111  1234677777753  22333333333321     134679999999754

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=98.05  E-value=5.4e-05  Score=45.62  Aligned_cols=68  Identities=19%  Similarity=0.167  Sum_probs=44.4

Q ss_pred             EEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhh-HHhhccccCEEEEEEECCC
Q 030289           19 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPL-WRHYFQNTHGLIFVVDSND   95 (180)
Q Consensus        19 i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-~~~~~~~~~~~i~v~d~~~   95 (180)
                      +++.|..|+||||+...+...-..     .+.....+  +  ++.++|+++....... .......+|.++++++...
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~~v~~~--~--d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~   70 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAK-----RGKRVLLI--D--DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEA   70 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEE--C--CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCch
Confidence            678899999999999887643211     11111111  1  8999999986543321 2456667899999998763

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.05  E-value=1.4e-05  Score=61.05  Aligned_cols=110  Identities=14%  Similarity=0.176  Sum_probs=60.0

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCC-------ccccc--c---------------ccceeEEEE-----------EEcC
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGE-------IVTTI--P---------------TIGFNVETV-----------EYKN   59 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~-------~~~~~--~---------------t~~~~~~~~-----------~~~~   59 (180)
                      ..-.++++|++|+||||++..|.+..       .....  .               -.++.....           ...+
T Consensus       190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~  269 (420)
T PRK14721        190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG  269 (420)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence            45589999999999999998775421       00000  0               011111111           1134


Q ss_pred             eEEEEEEcCCCCCChhh----HHhhc--cccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289           60 VSFTVWDVGGQDKIRPL----WRHYF--QNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN  131 (180)
Q Consensus        60 ~~~~i~D~~G~~~~~~~----~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~  131 (180)
                      ..+.++||+|.......    ...+.  ...+-.++|++++...  +.+.+.+..+...     -+--+++||.|-..
T Consensus       270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~--~~~~~~~~~f~~~-----~~~~~I~TKlDEt~  340 (420)
T PRK14721        270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSG--DTLDEVISAYQGH-----GIHGCIITKVDEAA  340 (420)
T ss_pred             CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCH--HHHHHHHHHhcCC-----CCCEEEEEeeeCCC
Confidence            67899999996654222    22221  1234578899987321  2333333333111     12367889999765

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=98.02  E-value=9.4e-05  Score=57.02  Aligned_cols=111  Identities=23%  Similarity=0.283  Sum_probs=60.8

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcC------C--cc---cccc-----------ccceeEEEE----E-----------
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLG------E--IV---TTIP-----------TIGFNVETV----E-----------   56 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~------~--~~---~~~~-----------t~~~~~~~~----~-----------   56 (180)
                      .+...|+++|++|+||||++..|...      +  ..   .+.+           ..++.....    +           
T Consensus        93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~  172 (437)
T PRK00771         93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK  172 (437)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence            34678899999999999999777421      1  00   0001           011111100    0           


Q ss_pred             EcCeEEEEEEcCCCCCChhhH------HhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCC
Q 030289           57 YKNVSFTVWDVGGQDKIRPLW------RHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP  130 (180)
Q Consensus        57 ~~~~~~~i~D~~G~~~~~~~~------~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~  130 (180)
                      .....+.++||+|........      ......+|.+++|+|++...   ........+...    -...-+|+||.|..
T Consensus       173 ~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~----l~i~gvIlTKlD~~  245 (437)
T PRK00771        173 FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEA----VGIGGIIITKLDGT  245 (437)
T ss_pred             hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhc----CCCCEEEEecccCC
Confidence            023479999999976543221      11233578999999986532   222222222111    01236778999975


Q ss_pred             C
Q 030289          131 N  131 (180)
Q Consensus       131 ~  131 (180)
                      .
T Consensus       246 a  246 (437)
T PRK00771        246 A  246 (437)
T ss_pred             C
Confidence            4

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=98.01  E-value=2.2e-05  Score=53.32  Aligned_cols=109  Identities=22%  Similarity=0.253  Sum_probs=59.5

Q ss_pred             EEEEcCCCCChHHHHHHhhc-C---C----cccccc----------ccceeEEEEEE---------------------c-
Q 030289           19 ILMVGLDAAGKTTILYKLKL-G---E----IVTTIP----------TIGFNVETVEY---------------------K-   58 (180)
Q Consensus        19 i~i~G~~~~GKStli~~l~~-~---~----~~~~~~----------t~~~~~~~~~~---------------------~-   58 (180)
                      ++|.|.-|||||||++++.. .   .    ......          ..+.....+..                     . 
T Consensus         3 ~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~~~   82 (178)
T PF02492_consen    3 IIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLREYE   82 (178)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCCCH
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHhcC
Confidence            57899999999999999983 1   1    000000          11122222211                     1 


Q ss_pred             -CeEEEEEEcCCCCCChhh--HHhh---ccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC
Q 030289           59 -NVSFTVWDVGGQDKIRPL--WRHY---FQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA  132 (180)
Q Consensus        59 -~~~~~i~D~~G~~~~~~~--~~~~---~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~  132 (180)
                       ..++.++++.|...-...  ....   .-..+.++.|+|+.+-.........+..-+..   .   =++++||+|+.++
T Consensus        83 ~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~---A---DvIvlnK~D~~~~  156 (178)
T PF02492_consen   83 ERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAF---A---DVIVLNKIDLVSD  156 (178)
T ss_dssp             GC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-------SEEEEE-GGGHHH
T ss_pred             CCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchh---c---CEEEEeccccCCh
Confidence             346788899995444333  1111   12358899999997643333333333333232   1   3899999998775


Q ss_pred             C
Q 030289          133 M  133 (180)
Q Consensus       133 ~  133 (180)
                      .
T Consensus       157 ~  157 (178)
T PF02492_consen  157 E  157 (178)
T ss_dssp             H
T ss_pred             h
Confidence            4

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=98.00  E-value=6.4e-06  Score=59.49  Aligned_cols=56  Identities=18%  Similarity=0.341  Sum_probs=36.9

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCcc-----cc--ccccceeEEE-EEE-cCeEEEEEEcCC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEIV-----TT--IPTIGFNVET-VEY-KNVSFTVWDVGG   69 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~-----~~--~~t~~~~~~~-~~~-~~~~~~i~D~~G   69 (180)
                      .-++++.|+|.||+|||||+|++......     ..  .|.+...... +.+ ..-.+.+.||||
T Consensus       141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPG  205 (335)
T KOG2485|consen  141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPG  205 (335)
T ss_pred             CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCC
Confidence            46899999999999999999988654311     11  1222222222 333 445688999999

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=97.97  E-value=4.4e-05  Score=56.55  Aligned_cols=66  Identities=15%  Similarity=0.197  Sum_probs=38.5

Q ss_pred             eEEEEEEcCCCCCChhhHHhhcc--------ccCEEEEEEECCChhhH-HHHHHHHHHHhcccccCCCeEEEEEecCCCC
Q 030289           60 VSFTVWDVGGQDKIRPLWRHYFQ--------NTHGLIFVVDSNDRERI-GEAKDELHRMLSEDELREAVLLVFANKQDLP  130 (180)
Q Consensus        60 ~~~~i~D~~G~~~~~~~~~~~~~--------~~~~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~  130 (180)
                      ....++++.|...-......++.        ..++++.|+|+.+.... ........++..    .   =++++||+|+.
T Consensus        91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~----A---D~IvlnK~Dl~  163 (318)
T PRK11537         91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY----A---DRILLTKTDVA  163 (318)
T ss_pred             CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh----C---CEEEEeccccC
Confidence            45788999997655554444322        24789999998643211 111111223321    1   38899999987


Q ss_pred             CC
Q 030289          131 NA  132 (180)
Q Consensus       131 ~~  132 (180)
                      ++
T Consensus       164 ~~  165 (318)
T PRK11537        164 GE  165 (318)
T ss_pred             CH
Confidence            63

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.96  E-value=6.9e-05  Score=57.68  Aligned_cols=66  Identities=11%  Similarity=0.146  Sum_probs=37.4

Q ss_pred             CeEEEEEEcCCCCCChh----hHHhhcc---ccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289           59 NVSFTVWDVGGQDKIRP----LWRHYFQ---NTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN  131 (180)
Q Consensus        59 ~~~~~i~D~~G~~~~~~----~~~~~~~---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~  131 (180)
                      +..+.++||+|......    ....++.   ...-+.+|++++..  ...+.+.+..+...    . +--+++||.|-..
T Consensus       299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~----~-~~~vI~TKlDet~  371 (424)
T PRK05703        299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSRL----P-LDGLIFTKLDETS  371 (424)
T ss_pred             CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCCC----C-CCEEEEecccccc
Confidence            56899999999765531    2333333   23466788887532  12333333333111    1 2368899999754

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.94  E-value=4.4e-05  Score=41.13  Aligned_cols=44  Identities=18%  Similarity=0.337  Sum_probs=29.1

Q ss_pred             ccCEEEEEEECCCh--hhHHHHHHHHHHHhcccccCCCeEEEEEecCC
Q 030289           83 NTHGLIFVVDSNDR--ERIGEAKDELHRMLSEDELREAVLLVFANKQD  128 (180)
Q Consensus        83 ~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D  128 (180)
                      -.++++|++|++..  .+++.....+..+...  ..+.|+++|+||+|
T Consensus        13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~--F~~~P~i~V~nK~D   58 (58)
T PF06858_consen   13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPL--FPNKPVIVVLNKID   58 (58)
T ss_dssp             T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH--TTTS-EEEEE--TT
T ss_pred             hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHH--cCCCCEEEEEeccC
Confidence            46899999999864  5677777777777554  35899999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>PRK10867 signal recognition particle protein; Provisional

Probab=97.93  E-value=8.8e-05  Score=57.07  Aligned_cols=66  Identities=17%  Similarity=0.145  Sum_probs=36.5

Q ss_pred             CeEEEEEEcCCCCCChhh-H---Hhh--ccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289           59 NVSFTVWDVGGQDKIRPL-W---RHY--FQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN  131 (180)
Q Consensus        59 ~~~~~i~D~~G~~~~~~~-~---~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~  131 (180)
                      ++.+.++||+|....... .   ..+  .-..+.+++|+|+....   ........+....   + ..-+|+||.|...
T Consensus       183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~---~-i~giIlTKlD~~~  254 (433)
T PRK10867        183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL---G-LTGVILTKLDGDA  254 (433)
T ss_pred             CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC---C-CCEEEEeCccCcc
Confidence            467999999996543221 1   111  12467889999986432   2323333332111   1 1356779999644

>TIGR00959 ffh signal recognition particle protein

Probab=97.93  E-value=6.5e-05  Score=57.73  Aligned_cols=66  Identities=17%  Similarity=0.157  Sum_probs=37.6

Q ss_pred             CeEEEEEEcCCCCCChhhHHh----h--ccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289           59 NVSFTVWDVGGQDKIRPLWRH----Y--FQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN  131 (180)
Q Consensus        59 ~~~~~i~D~~G~~~~~~~~~~----~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~  131 (180)
                      ++.+.++||||..........    +  .-+.+.+++|+|+....   ........+....   + ..-+|.||.|...
T Consensus       182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v---~-i~giIlTKlD~~~  253 (428)
T TIGR00959       182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL---G-LTGVVLTKLDGDA  253 (428)
T ss_pred             CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC---C-CCEEEEeCccCcc
Confidence            467999999996544222111    1  22478899999987432   3333333332211   1 2356789999644

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.92  E-value=7.5e-05  Score=55.89  Aligned_cols=21  Identities=33%  Similarity=0.496  Sum_probs=18.5

Q ss_pred             EEEEcCCCCChHHHHHHhhcC
Q 030289           19 ILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        19 i~i~G~~~~GKStli~~l~~~   39 (180)
                      .++.|--|||||||+|+++..
T Consensus         7 ~iltGFLGaGKTTll~~ll~~   27 (341)
T TIGR02475         7 TIVTGFLGAGKTTLIRHLLQN   27 (341)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            568899999999999999753

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>KOG2484 consensus GTPase [General function prediction only]

Probab=97.92  E-value=7.8e-06  Score=60.84  Aligned_cols=55  Identities=16%  Similarity=0.333  Sum_probs=40.4

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCcccccc--ccceeEEEEEEcCeEEEEEEcCC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP--TIGFNVETVEYKNVSFTVWDVGG   69 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G   69 (180)
                      .+.++++|+|-|++||||+||+|.........+  ++.-....+.. +-.+.+.|.||
T Consensus       250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~L-dk~i~llDsPg  306 (435)
T KOG2484|consen  250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKL-DKKIRLLDSPG  306 (435)
T ss_pred             CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheec-cCCceeccCCc
Confidence            678999999999999999999999877433333  33333333333 34789999999

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.90  E-value=1.1e-05  Score=51.11  Aligned_cols=21  Identities=29%  Similarity=0.427  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHhhc
Q 030289           18 RILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~   38 (180)
                      .|+|.|++||||||+.+.|..
T Consensus         1 vI~I~G~~gsGKST~a~~La~   21 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAE   21 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999999974

...

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.89  E-value=1.1e-05  Score=54.71  Aligned_cols=23  Identities=48%  Similarity=0.648  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcC
Q 030289           17 MRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      .||+|+|+|||||||+..+|...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999999999865

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.89  E-value=0.00014  Score=61.89  Aligned_cols=111  Identities=17%  Similarity=0.213  Sum_probs=62.1

Q ss_pred             EEEEcCCCCChHHHHHHhhcCC-ccccc-----cccceeEEEEEEcCeEEEEEEcCCCC--------CChhhHHhhc---
Q 030289           19 ILMVGLDAAGKTTILYKLKLGE-IVTTI-----PTIGFNVETVEYKNVSFTVWDVGGQD--------KIRPLWRHYF---   81 (180)
Q Consensus        19 i~i~G~~~~GKStli~~l~~~~-~~~~~-----~t~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~---   81 (180)
                      -+|||++|+||||++..--.+. +....     ...+......- -..+-.++||.|.-        .....|..++   
T Consensus       128 y~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cdww-f~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lL  206 (1188)
T COG3523         128 YMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCDWW-FTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLL  206 (1188)
T ss_pred             eEEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccCcc-cccceEEEcCCcceecccCcchhhHHHHHHHHHHH
Confidence            4799999999999985443222 11110     11111111111 23356788999821        1233354442   


Q ss_pred             ------cccCEEEEEEECCC-----hhh----HHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289           82 ------QNTHGLIFVVDSND-----RER----IGEAKDELHRMLSEDELREAVLLVFANKQDLPN  131 (180)
Q Consensus        82 ------~~~~~~i~v~d~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~  131 (180)
                            +-.+++|+++|+.+     +..    ...+..-+.++... .....|+++++||.|+..
T Consensus       207 kk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~t-L~~~~PVYl~lTk~Dll~  270 (1188)
T COG3523         207 KKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRET-LHARLPVYLVLTKADLLP  270 (1188)
T ss_pred             HHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHh-hccCCceEEEEecccccc
Confidence                  24699999999754     111    12233334444322 345789999999999876

>PRK08118 topology modulation protein; Reviewed

Probab=97.88  E-value=1.2e-05  Score=54.11  Aligned_cols=23  Identities=26%  Similarity=0.498  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcC
Q 030289           17 MRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      .+|+|+|++|||||||...|...
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999988754

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.88  E-value=6.9e-05  Score=56.37  Aligned_cols=25  Identities=36%  Similarity=0.438  Sum_probs=20.6

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ...-.++++|++|+||||++.++..
T Consensus       204 ~~~~ii~lvGptGvGKTTt~akLA~  228 (407)
T PRK12726        204 SNHRIISLIGQTGVGKTTTLVKLGW  228 (407)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3455678999999999999988863

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.87  E-value=5.9e-05  Score=61.47  Aligned_cols=110  Identities=16%  Similarity=0.119  Sum_probs=59.4

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCC-ccc------------ccc-----------ccceeEEEE-----------EEcCeE
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGE-IVT------------TIP-----------TIGFNVETV-----------EYKNVS   61 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~-~~~------------~~~-----------t~~~~~~~~-----------~~~~~~   61 (180)
                      --++|+|++|+||||++..|...- ...            +..           -.++.....           ...+..
T Consensus       186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D  265 (767)
T PRK14723        186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH  265 (767)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence            357899999999999998887422 000            000           011111110           113457


Q ss_pred             EEEEEcCCCCCChhh----HHhh--ccccCEEEEEEECCC-hhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289           62 FTVWDVGGQDKIRPL----WRHY--FQNTHGLIFVVDSND-RERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN  131 (180)
Q Consensus        62 ~~i~D~~G~~~~~~~----~~~~--~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~  131 (180)
                      +.++||+|.......    ....  ....+-.++|+|++. .+.+..+...+......     -+-=+|+||.|...
T Consensus       266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~-----~i~glIlTKLDEt~  337 (767)
T PRK14723        266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGE-----DVDGCIITKLDEAT  337 (767)
T ss_pred             EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccC-----CCCEEEEeccCCCC
Confidence            999999995543221    1111  123456889999874 34444443333322100     12357799999765

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.86  E-value=4.2e-05  Score=59.43  Aligned_cols=23  Identities=30%  Similarity=0.278  Sum_probs=19.8

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhc
Q 030289           16 EMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      .--++++|++||||||++..|..
T Consensus       256 g~Vi~LvGpnGvGKTTTiaKLA~  278 (484)
T PRK06995        256 GGVFALMGPTGVGKTTTTAKLAA  278 (484)
T ss_pred             CcEEEEECCCCccHHHHHHHHHH
Confidence            34688999999999999988864

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.86  E-value=1.6e-05  Score=43.88  Aligned_cols=20  Identities=30%  Similarity=0.562  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCChHHHHHHhh
Q 030289           18 RILMVGLDAAGKTTILYKLK   37 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~   37 (180)
                      ..+|.|++|+|||||+.++.
T Consensus        25 ~tli~G~nGsGKSTllDAi~   44 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQ   44 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58899999999999998875

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.86  E-value=5.3e-05  Score=57.70  Aligned_cols=109  Identities=19%  Similarity=0.234  Sum_probs=59.0

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC-c-----c---cc--------------ccccceeEEEE----------EEcCeEE
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE-I-----V---TT--------------IPTIGFNVETV----------EYKNVSF   62 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~-~-----~---~~--------------~~t~~~~~~~~----------~~~~~~~   62 (180)
                      ..-++++|++||||||++.+|.... .     .   ..              ....++.....          ...+.++
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~  302 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL  302 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence            4568899999999999998886311 0     0   00              00111211111          0136688


Q ss_pred             EEEEcCCCCCChh-h---HHhhcc-----ccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289           63 TVWDVGGQDKIRP-L---WRHYFQ-----NTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN  131 (180)
Q Consensus        63 ~i~D~~G~~~~~~-~---~~~~~~-----~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~  131 (180)
                      .++||+|...... .   +..++.     ..+-.++|+|++...  +.+......+ +..    -+--+|+||.|-..
T Consensus       303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f-~~~----~~~glIlTKLDEt~  373 (432)
T PRK12724        303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAY-ESL----NYRRILLTKLDEAD  373 (432)
T ss_pred             EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHh-cCC----CCCEEEEEcccCCC
Confidence            9999999653321 1   222222     234678899987432  2333333322 111    12367889999765

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=97.86  E-value=1.8e-05  Score=55.03  Aligned_cols=20  Identities=20%  Similarity=0.373  Sum_probs=16.9

Q ss_pred             cEEEEEcCCCCChHHHHHHh
Q 030289           17 MRILMVGLDAAGKTTILYKL   36 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l   36 (180)
                      |-.+||||||+||||.++-.
T Consensus         3 fgqvVIGPPgSGKsTYc~g~   22 (290)
T KOG1533|consen    3 FGQVVIGPPGSGKSTYCNGM   22 (290)
T ss_pred             cceEEEcCCCCCccchhhhH
Confidence            45689999999999998654

>PRK07261 topology modulation protein; Provisional

Probab=97.85  E-value=1.4e-05  Score=53.88  Aligned_cols=23  Identities=35%  Similarity=0.609  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcC
Q 030289           17 MRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      .+|+|+|++|+|||||...|...
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            37999999999999999988643

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.80  E-value=0.0002  Score=51.82  Aligned_cols=111  Identities=18%  Similarity=0.237  Sum_probs=62.2

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcC-----C---ccc--------------cccccceeEEEEE--------------Ec
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLG-----E---IVT--------------TIPTIGFNVETVE--------------YK   58 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~-----~---~~~--------------~~~t~~~~~~~~~--------------~~   58 (180)
                      +.-+++++|++|+||||++..+...     .   ...              +....++......              ..
T Consensus        74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~  153 (270)
T PRK06731         74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA  153 (270)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence            4479999999999999998777432     1   000              0011222211110              02


Q ss_pred             CeEEEEEEcCCCCCChhh----HHhhcc--ccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC
Q 030289           59 NVSFTVWDVGGQDKIRPL----WRHYFQ--NTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA  132 (180)
Q Consensus        59 ~~~~~i~D~~G~~~~~~~----~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~  132 (180)
                      +..+.++||+|.......    +..++.  +.+-+++|++++...  +....++..+..     -.+--+++||.|....
T Consensus       154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f~~-----~~~~~~I~TKlDet~~  226 (270)
T PRK06731        154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD-----IHIDGIVFTKFDETAS  226 (270)
T ss_pred             CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHhCC-----CCCCEEEEEeecCCCC
Confidence            568999999997643221    222222  346789999986321  233334444321     1224678999997663

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.80  E-value=0.00024  Score=43.99  Aligned_cols=101  Identities=20%  Similarity=0.197  Sum_probs=55.8

Q ss_pred             EEEEc-CCCCChHHHHHHhhcCCccccccccceeEEEEEE---cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECC
Q 030289           19 ILMVG-LDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY---KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSN   94 (180)
Q Consensus        19 i~i~G-~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~   94 (180)
                      |+++| ..|+||||+.-.|...-....    +....-++.   ....+.++|+|+...  ......+..+|.++++.+.+
T Consensus         2 i~~~~~kgg~gkt~~~~~la~~~~~~~----~~~~~l~d~d~~~~~D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~~   75 (106)
T cd03111           2 IAFIGAKGGVGATTLAANLAVALAKEA----GRRVLLVDLDLQFGDDYVVVDLGRSLD--EVSLAALDQADRVFLVTQQD   75 (106)
T ss_pred             EEEECCCCCCcHHHHHHHHHHHHHhcC----CCcEEEEECCCCCCCCEEEEeCCCCcC--HHHHHHHHHcCeEEEEecCC
Confidence            34544 678999998766642211000    101111111   122899999998653  33455778899999999875


Q ss_pred             ChhhHHHHHHHHHHHhcccccCCCeEEEEEec
Q 030289           95 DRERIGEAKDELHRMLSEDELREAVLLVFANK  126 (180)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK  126 (180)
                       ..++......+..+..........+.+|+|+
T Consensus        76 -~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          76 -LPSIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             -hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence             4445555555544433221113456677775

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.78  E-value=0.00022  Score=43.82  Aligned_cols=81  Identities=16%  Similarity=0.161  Sum_probs=49.0

Q ss_pred             EEEEc-CCCCChHHHHHHhhcCCccccccccceeEEEEEE-cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCCh
Q 030289           19 ILMVG-LDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDR   96 (180)
Q Consensus        19 i~i~G-~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~   96 (180)
                      |+|.| ..|+||||+...+...--..     +....-++. ..+.+.++|+|+....  .....+..+|.++++.+.+ .
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~~-----~~~vl~~d~d~~~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~~~-~   73 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALARR-----GKRVLLIDLDPQYDYIIIDTPPSLGL--LTRNALAAADLVLIPVQPS-P   73 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHhC-----CCcEEEEeCCCCCCEEEEeCcCCCCH--HHHHHHHHCCEEEEeccCC-H
Confidence            56777 56899999987665322111     111111111 1167999999996533  3446778899999999875 4


Q ss_pred             hhHHHHHHHHH
Q 030289           97 ERIGEAKDELH  107 (180)
Q Consensus        97 ~~~~~~~~~~~  107 (180)
                      .++......+.
T Consensus        74 ~s~~~~~~~~~   84 (104)
T cd02042          74 LDLDGLEKLLE   84 (104)
T ss_pred             HHHHHHHHHHH
Confidence            44555555443

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.77  E-value=6.5e-05  Score=56.03  Aligned_cols=96  Identities=21%  Similarity=0.240  Sum_probs=54.5

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC--------------cccc--------ccccc-eeEEE----------------
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE--------------IVTT--------IPTIG-FNVET----------------   54 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~--------------~~~~--------~~t~~-~~~~~----------------   54 (180)
                      .+.--|+++|..|+||||.+-.+..+-              +...        ....+ +.|..                
T Consensus        99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~  178 (483)
T KOG0780|consen   99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDR  178 (483)
T ss_pred             CCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHH
Confidence            445567899999999999987775310              0000        00001 11111                


Q ss_pred             EEEcCeEEEEEEcCCCCCCh-hhHHhhc-----cccCEEEEEEECCChhhHHHHHHHHHHH
Q 030289           55 VEYKNVSFTVWDVGGQDKIR-PLWRHYF-----QNTHGLIFVVDSNDRERIGEAKDELHRM  109 (180)
Q Consensus        55 ~~~~~~~~~i~D~~G~~~~~-~~~~~~~-----~~~~~~i~v~d~~~~~~~~~~~~~~~~~  109 (180)
                      +.-+++++.|+||.|...-. ++.....     -+.|-+|+|.|++-...-+....-+.+-
T Consensus       179 fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~  239 (483)
T KOG0780|consen  179 FKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKET  239 (483)
T ss_pred             HHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHh
Confidence            11256789999999955432 2222211     2468999999997554444444444443

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.75  E-value=0.00039  Score=52.84  Aligned_cols=109  Identities=20%  Similarity=0.234  Sum_probs=61.3

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcC---------Ccc---c---ccc-----------ccceeEEEEEE-----------c
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLG---------EIV---T---TIP-----------TIGFNVETVEY-----------K   58 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~---------~~~---~---~~~-----------t~~~~~~~~~~-----------~   58 (180)
                      ...|+++|++|+||||.+..|...         ..+   .   +..           -.++.+.....           .
T Consensus       174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~  253 (388)
T PRK12723        174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK  253 (388)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence            457889999999999999877531         100   0   000           11121111111           4


Q ss_pred             CeEEEEEEcCCCCCChh----hHHhhcccc--C-EEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289           59 NVSFTVWDVGGQDKIRP----LWRHYFQNT--H-GLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN  131 (180)
Q Consensus        59 ~~~~~i~D~~G~~~~~~----~~~~~~~~~--~-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~  131 (180)
                      +..+.++||+|......    ....++..+  + -.++|+|++..  ...+...+..+...     -+--+++||.|-..
T Consensus       254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~~-----~~~~~I~TKlDet~  326 (388)
T PRK12723        254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSPF-----SYKTVIFTKLDETT  326 (388)
T ss_pred             CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcCC-----CCCEEEEEeccCCC
Confidence            57899999999654332    122233322  3 58899998754  23444444444211     12467899999765

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.75  E-value=2.3e-05  Score=51.04  Aligned_cols=20  Identities=30%  Similarity=0.539  Sum_probs=18.3

Q ss_pred             EEEEcCCCCChHHHHHHhhc
Q 030289           19 ILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        19 i~i~G~~~~GKStli~~l~~   38 (180)
                      |+++|++||||||+++++..
T Consensus         2 ii~~G~pgsGKSt~a~~l~~   21 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAK   21 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            68999999999999999873

...

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.73  E-value=0.00026  Score=46.09  Aligned_cols=105  Identities=17%  Similarity=0.219  Sum_probs=58.7

Q ss_pred             EEcCCCCChHHHHHHhhcCCccccccccceeEE-EEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhH
Q 030289           21 MVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE-TVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERI   99 (180)
Q Consensus        21 i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~-~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~   99 (180)
                      .-|.+|+|||++.-.+...-......+.-++.. ....-.+++.++|+|+..  .......+..+|.++++.+.+ ..++
T Consensus         5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~-~~s~   81 (139)
T cd02038           5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE-PTSI   81 (139)
T ss_pred             EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-hhHH
Confidence            456889999999766542110000000000000 000011789999999853  334456788999999999876 3334


Q ss_pred             HHHHHHHHHHhcccccCCCeEEEEEecCCCC
Q 030289          100 GEAKDELHRMLSEDELREAVLLVFANKQDLP  130 (180)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~  130 (180)
                      ......+..+....  ...++.+|.|+++..
T Consensus        82 ~~~~~~l~~l~~~~--~~~~~~lVvN~~~~~  110 (139)
T cd02038          82 TDAYALIKKLAKQL--RVLNFRVVVNRAESP  110 (139)
T ss_pred             HHHHHHHHHHHHhc--CCCCEEEEEeCCCCH
Confidence            44333333332221  345678999999743

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.73  E-value=0.00012  Score=53.75  Aligned_cols=110  Identities=20%  Similarity=0.241  Sum_probs=61.5

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC--------------ccc--------cccccceeEEEEE-E-------------
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE--------------IVT--------TIPTIGFNVETVE-Y-------------   57 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~--------------~~~--------~~~t~~~~~~~~~-~-------------   57 (180)
                      .+.+-|+|+|-+|+||||-|-.|...-              ++.        .....++....-. .             
T Consensus       137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~  216 (340)
T COG0552         137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA  216 (340)
T ss_pred             CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence            347888999999999999998775310              000        0001111111100 0             


Q ss_pred             ---cCeEEEEEEcCCCCCChhh-------HHhhcccc-----CEEEEEEECCCh-hhHHHHHHHHHHHhcccccCCCeEE
Q 030289           58 ---KNVSFTVWDVGGQDKIRPL-------WRHYFQNT-----HGLIFVVDSNDR-ERIGEAKDELHRMLSEDELREAVLL  121 (180)
Q Consensus        58 ---~~~~~~i~D~~G~~~~~~~-------~~~~~~~~-----~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~ii  121 (180)
                         .++.+.++||+|.-.....       ..+..+..     |-+++++|++-. +.++.... +......       -=
T Consensus       217 Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~-F~eav~l-------~G  288 (340)
T COG0552         217 AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKI-FNEAVGL-------DG  288 (340)
T ss_pred             HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHH-HHHhcCC-------ce
Confidence               4678999999995433221       22222333     348888899754 44444443 3333222       25


Q ss_pred             EEEecCCCCC
Q 030289          122 VFANKQDLPN  131 (180)
Q Consensus       122 iv~nK~D~~~  131 (180)
                      +++||.|...
T Consensus       289 iIlTKlDgtA  298 (340)
T COG0552         289 IILTKLDGTA  298 (340)
T ss_pred             EEEEecccCC
Confidence            7789999543

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.73  E-value=0.00018  Score=54.53  Aligned_cols=112  Identities=23%  Similarity=0.184  Sum_probs=63.8

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcC------C-----cccccc-----------ccceeEEEEEE-------------
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLG------E-----IVTTIP-----------TIGFNVETVEY-------------   57 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~------~-----~~~~~~-----------t~~~~~~~~~~-------------   57 (180)
                      +.++..|+++|..|+||||.+-.|...      +     ...|.|           .+++.+.....             
T Consensus        97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~  176 (451)
T COG0541          97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALE  176 (451)
T ss_pred             CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHH
Confidence            456788999999999999998776431      1     111111           11111111110             


Q ss_pred             ----cCeEEEEEEcCCCCCChhhHHh------hccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecC
Q 030289           58 ----KNVSFTVWDVGGQDKIRPLWRH------YFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQ  127 (180)
Q Consensus        58 ----~~~~~~i~D~~G~~~~~~~~~~------~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~  127 (180)
                          ..+.+.|+||+|....+...-.      -.-+.|-+++|+|+.-...-....+-+.+.+..       -=+|+||.
T Consensus       177 ~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~i-------tGvIlTKl  249 (451)
T COG0541         177 KAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGI-------TGVILTKL  249 (451)
T ss_pred             HHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCC-------ceEEEEcc
Confidence                2358999999997665433211      123578899999987544333333333333222       24667888


Q ss_pred             CCCC
Q 030289          128 DLPN  131 (180)
Q Consensus       128 D~~~  131 (180)
                      |...
T Consensus       250 DGda  253 (451)
T COG0541         250 DGDA  253 (451)
T ss_pred             cCCC
Confidence            8654

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=97.72  E-value=1.9e-05  Score=58.93  Aligned_cols=82  Identities=16%  Similarity=0.171  Sum_probs=49.6

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEE-EEEcCeEEEEEEcCCCCCC--hhhHHhhccccCEEEE
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET-VEYKNVSFTVWDVGGQDKI--RPLWRHYFQNTHGLIF   89 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~-~~~~~~~~~i~D~~G~~~~--~~~~~~~~~~~~~~i~   89 (180)
                      .++++.|.|||=|++||||+||.|-..+.....|--|..... +-.--..+-++|+||--.-  ..-....+   .+++-
T Consensus       304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLmkrIfLIDcPGvVyps~dset~ivL---kGvVR  380 (572)
T KOG2423|consen  304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLMKRIFLIDCPGVVYPSSDSETDIVL---KGVVR  380 (572)
T ss_pred             CccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHHhceeEecCCCccCCCCCchHHHHh---hceee
Confidence            578899999999999999999999887744433322211100 0001236788999993321  22222222   35666


Q ss_pred             EEECCChh
Q 030289           90 VVDSNDRE   97 (180)
Q Consensus        90 v~d~~~~~   97 (180)
                      |=++.+++
T Consensus       381 Venv~~pe  388 (572)
T KOG2423|consen  381 VENVKNPE  388 (572)
T ss_pred             eeecCCHH
Confidence            66666654

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.72  E-value=1.8e-05  Score=52.94  Aligned_cols=22  Identities=36%  Similarity=0.530  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCChHHHHHHhhcC
Q 030289           18 RILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~   39 (180)
                      ||+|.|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999854

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.71  E-value=0.00014  Score=48.95  Aligned_cols=24  Identities=29%  Similarity=0.295  Sum_probs=20.5

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      ..-+.|+|++|+|||||++++...
T Consensus         6 ~~ii~ivG~sgsGKTTLi~~li~~   29 (173)
T PRK10751          6 IPLLAIAAWSGTGKTTLLKKLIPA   29 (173)
T ss_pred             ceEEEEECCCCChHHHHHHHHHHH
Confidence            346789999999999999999844

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.71  E-value=3.4e-05  Score=49.96  Aligned_cols=26  Identities=27%  Similarity=0.261  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      ..=.++|+|++|+|||||++.+++..
T Consensus        10 ~g~~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   10 PGEIVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEEccCCCccccceeeecccc
Confidence            34578999999999999999888665

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.69  E-value=0.00013  Score=52.99  Aligned_cols=91  Identities=19%  Similarity=0.160  Sum_probs=58.4

Q ss_pred             hhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEee
Q 030289           79 HYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAAC  158 (180)
Q Consensus        79 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  158 (180)
                      .-.-+.|-+++|+.+.+|+--..+..-+......   .++.-++|+||+|+.++..... .+.  .......+.+++.+|
T Consensus        75 p~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~-~~~--~~~y~~~gy~v~~~s  148 (301)
T COG1162          75 PPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAV-KEL--LREYEDIGYPVLFVS  148 (301)
T ss_pred             CcccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHH-HHH--HHHHHhCCeeEEEec
Confidence            3334577788888877765333333333333232   4666788899999998655442 111  112234577899999


Q ss_pred             ccCCCChHHHHHHHHHH
Q 030289          159 ATSGQGLYEGLDWLSSN  175 (180)
Q Consensus       159 a~~~~~i~~~~~~l~~~  175 (180)
                      ++++++++++.+.+...
T Consensus       149 ~~~~~~~~~l~~~l~~~  165 (301)
T COG1162         149 AKNGDGLEELAELLAGK  165 (301)
T ss_pred             CcCcccHHHHHHHhcCC
Confidence            99999999999887654

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.68  E-value=4.2e-05  Score=43.46  Aligned_cols=21  Identities=33%  Similarity=0.417  Sum_probs=18.9

Q ss_pred             EEEEcCCCCChHHHHHHhhcC
Q 030289           19 ILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        19 i~i~G~~~~GKStli~~l~~~   39 (180)
                      |++.|++|+||||+.+.|...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999988754

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.68  E-value=3.5e-05  Score=53.89  Aligned_cols=23  Identities=30%  Similarity=0.362  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCC
Q 030289           18 RILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      -++|+||+|||||||+|-+.+-.
T Consensus        33 ~vaI~GpSGSGKSTLLniig~ld   55 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGGLD   55 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            47899999999999999886544

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.66  E-value=3.9e-05  Score=52.96  Aligned_cols=26  Identities=31%  Similarity=0.397  Sum_probs=21.6

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      +.=.++|+||+|||||||+..+.+=+
T Consensus        27 ~Gevv~iiGpSGSGKSTlLRclN~LE   52 (240)
T COG1126          27 KGEVVVIIGPSGSGKSTLLRCLNGLE   52 (240)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCc
Confidence            34468999999999999998887554

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.66  E-value=6.9e-05  Score=50.38  Aligned_cols=21  Identities=38%  Similarity=0.523  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCChHHHHHHhhc
Q 030289           18 RILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~   38 (180)
                      ||.+.|++|+|||||++++..
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~   21 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIE   21 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHH
T ss_pred             CEEEECcCCCCHHHHHHHHHH
Confidence            689999999999999999874

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.66  E-value=3.7e-05  Score=54.10  Aligned_cols=22  Identities=23%  Similarity=0.291  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHhhcC
Q 030289           18 RILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~   39 (180)
                      =|+++|++|||||||+|-+.+-
T Consensus        31 fvsilGpSGcGKSTLLriiAGL   52 (248)
T COG1116          31 FVAILGPSGCGKSTLLRLIAGL   52 (248)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999888653

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.66  E-value=5e-05  Score=53.69  Aligned_cols=30  Identities=23%  Similarity=0.420  Sum_probs=25.1

Q ss_pred             hcccCccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           11 LFARKEMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      .+....|+++|+|++|||||+|+-.++...
T Consensus         8 ~l~~~~fr~viIG~sGSGKT~li~~lL~~~   37 (241)
T PF04665_consen    8 SLLKDPFRMVIIGKSGSGKTTLIKSLLYYL   37 (241)
T ss_pred             HhcCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence            345678999999999999999998887543

This is thought to be an ATPase involved in viral DNA packaging [].

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.66  E-value=0.00067  Score=43.82  Aligned_cols=26  Identities=23%  Similarity=0.271  Sum_probs=22.0

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      ..-.+++.|++|+|||++++.+...-
T Consensus        18 ~~~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            35579999999999999999988544

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK01889 GTPase RsgA; Reviewed

Probab=97.64  E-value=8.1e-05  Score=56.08  Aligned_cols=35  Identities=20%  Similarity=0.307  Sum_probs=27.1

Q ss_pred             HHHHhhhcccCccEEEEEcCCCCChHHHHHHhhcCC
Q 030289            5 ISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus         5 ~~~~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      +..+...++ ..-+++++|.+|+|||||+|.+++..
T Consensus       185 l~~L~~~L~-~g~~~~lvG~sgvGKStLin~L~g~~  219 (356)
T PRK01889        185 LDVLAAWLS-GGKTVALLGSSGVGKSTLVNALLGEE  219 (356)
T ss_pred             HHHHHHHhh-cCCEEEEECCCCccHHHHHHHHHHhc
Confidence            455555553 34589999999999999999998654

>PRK14530 adenylate kinase; Provisional

Probab=97.64  E-value=5.2e-05  Score=53.10  Aligned_cols=23  Identities=39%  Similarity=0.452  Sum_probs=20.3

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhc
Q 030289           16 EMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ..+|+|+|++||||||+.+.|..
T Consensus         3 ~~~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          3 QPRILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999998863

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.63  E-value=5.2e-05  Score=52.86  Aligned_cols=26  Identities=27%  Similarity=0.310  Sum_probs=23.1

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhc
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ..+.+.|+|.|++|||||||.+.|..
T Consensus         3 ~~~~~iI~I~G~sGsGKTTl~~~l~~   28 (209)
T PRK05480          3 MKKPIIIGIAGGSGSGKTTVASTIYE   28 (209)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            45788999999999999999988875

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=97.61  E-value=0.00018  Score=47.90  Aligned_cols=48  Identities=33%  Similarity=0.486  Sum_probs=30.4

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCC
Q 030289           18 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQD   71 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~   71 (180)
                      .+.|+|.+|+|||||++++...-     ...+.....+..+...+.+ |.+|..
T Consensus         3 vi~i~G~~gsGKTTli~~L~~~l-----~~~g~~V~~iK~~~~~~~~-d~~g~D   50 (159)
T cd03116           3 VIGFVGYSGSGKTTLLEKLIPAL-----SARGLRVAVIKHDHHDFDI-DTPGKD   50 (159)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH-----HHcCCcEEEEEecCCcccc-cCccch
Confidence            47899999999999999998432     2223334444444433333 666643

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>TIGR00235 udk uridine kinase

Probab=97.60  E-value=5.4e-05  Score=52.70  Aligned_cols=26  Identities=31%  Similarity=0.262  Sum_probs=22.4

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhc
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      +.+..-|+|+|++|||||||++.+.+
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~   28 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYE   28 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHH
Confidence            45567799999999999999998874

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.59  E-value=6e-05  Score=51.57  Aligned_cols=22  Identities=27%  Similarity=0.478  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHhhcC
Q 030289           18 RILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~   39 (180)
                      .++|+|++|+|||||++.|...
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            6899999999999999999654

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.59  E-value=5.3e-05  Score=54.04  Aligned_cols=22  Identities=27%  Similarity=0.273  Sum_probs=19.3

Q ss_pred             cEEEEEcCCCCChHHHHHHhhc
Q 030289           17 MRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~   38 (180)
                      --++++||+|||||||++.+.+
T Consensus        29 ~i~~iiGpNG~GKSTLLk~l~g   50 (258)
T COG1120          29 EITGILGPNGSGKSTLLKCLAG   50 (258)
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            3468999999999999999875

>PRK06217 hypothetical protein; Validated

Probab=97.59  E-value=6e-05  Score=51.45  Aligned_cols=23  Identities=35%  Similarity=0.413  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcC
Q 030289           17 MRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      .+|+|+|.+||||||+..+|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999988743

>PRK03839 putative kinase; Provisional

Probab=97.57  E-value=6.7e-05  Score=51.03  Aligned_cols=22  Identities=32%  Similarity=0.296  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHhhcC
Q 030289           18 RILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~   39 (180)
                      +|+++|++||||||+..+|...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999888643

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.56  E-value=5.9e-05  Score=51.19  Aligned_cols=22  Identities=36%  Similarity=0.425  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChHHHHHHhhcC
Q 030289           18 RILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~   39 (180)
                      .++|+|++|||||||++.|...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998654

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK08233 hypothetical protein; Provisional

Probab=97.56  E-value=7.7e-05  Score=50.64  Aligned_cols=25  Identities=28%  Similarity=0.345  Sum_probs=21.1

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcC
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      +.+-|+|.|++|||||||.++|...
T Consensus         2 ~~~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          2 KTKIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhh
Confidence            3467889999999999999999743

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.55  E-value=8.9e-05  Score=47.60  Aligned_cols=25  Identities=36%  Similarity=0.352  Sum_probs=21.7

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      .-.++++|++|+||||++..+...-
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~   26 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALAREL   26 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhcc
Confidence            3578999999999999999998655

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.55  E-value=7.2e-05  Score=48.59  Aligned_cols=21  Identities=33%  Similarity=0.517  Sum_probs=19.0

Q ss_pred             EEEEcCCCCChHHHHHHhhcC
Q 030289           19 ILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        19 i~i~G~~~~GKStli~~l~~~   39 (180)
                      |+|+|++|+|||||++.|...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999864

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=97.54  E-value=6.8e-05  Score=53.29  Aligned_cols=22  Identities=27%  Similarity=0.357  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCCChHHHHHHhhc
Q 030289           17 MRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~   38 (180)
                      =-++++||+|+|||||+..+++
T Consensus        31 ~~~~iiGPNGaGKSTLlK~iLG   52 (254)
T COG1121          31 EITALIGPNGAGKSTLLKAILG   52 (254)
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            3578999999999999999986

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.54  E-value=7.6e-05  Score=46.05  Aligned_cols=22  Identities=27%  Similarity=0.472  Sum_probs=19.2

Q ss_pred             ccEEEEEcCCCCChHHHHHHhh
Q 030289           16 EMRILMVGLDAAGKTTILYKLK   37 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~   37 (180)
                      .-.++++|++|+|||||++.+.
T Consensus        15 ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          15 KVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             CEEEEEEcCCCCCHHHHHHHhh
Confidence            3458999999999999998876

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=97.54  E-value=0.0019  Score=43.13  Aligned_cols=146  Identities=12%  Similarity=0.054  Sum_probs=90.8

Q ss_pred             HHHhhhcccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCC---CCCChhhHHhhcc
Q 030289            6 SRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGG---QDKIRPLWRHYFQ   82 (180)
Q Consensus         6 ~~~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G---~~~~~~~~~~~~~   82 (180)
                      ..+...+..+.-.|+++|..+.++..|..++......                 .++++.-...   ..+....    =.
T Consensus         5 ~p~~klp~ln~atiLLVg~e~~~~~~LA~a~l~~~~~-----------------~~l~Vh~a~sLPLp~e~~~l----Rp   63 (176)
T PF11111_consen    5 RPFDKLPELNTATILLVGTEEALLQQLAEAMLEEDKE-----------------FKLKVHLAKSLPLPSENNNL----RP   63 (176)
T ss_pred             cccccCCCcceeEEEEecccHHHHHHHHHHHHhhccc-----------------eeEEEEEeccCCCcccccCC----Cc
Confidence            3445566678899999999999999999999853311                 1111111111   0111111    23


Q ss_pred             ccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCC
Q 030289           83 NTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSG  162 (180)
Q Consensus        83 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  162 (180)
                      +.|.++|++|.+...+++.....+..+-......++.++.-.-..........+++.+.     +..++.|++.+.-.+.
T Consensus        64 rIDlIVFvinl~sk~SL~~ve~SL~~vd~~fflGKVCfl~t~a~~~~~~sv~~~~V~kl-----a~~y~~plL~~~le~~  138 (176)
T PF11111_consen   64 RIDLIVFVINLHSKYSLQSVEASLSHVDPSFFLGKVCFLATNAGRESHCSVHPNEVRKL-----AATYNSPLLFADLENE  138 (176)
T ss_pred             eeEEEEEEEecCCcccHHHHHHHHhhCChhhhccceEEEEcCCCcccccccCHHHHHHH-----HHHhCCCEEEeecccc
Confidence            58999999999999999999988877755444444333333333333334445554432     2345567888877777


Q ss_pred             CChHHHHHHHHHHhh
Q 030289          163 QGLYEGLDWLSSNVS  177 (180)
Q Consensus       163 ~~i~~~~~~l~~~~~  177 (180)
                      ++...+-+.+.+.++
T Consensus       139 ~~~~~lAqRLL~~lq  153 (176)
T PF11111_consen  139 EGRTSLAQRLLRMLQ  153 (176)
T ss_pred             hHHHHHHHHHHHHHH
Confidence            777777777777654

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.54  E-value=7.5e-05  Score=47.76  Aligned_cols=21  Identities=38%  Similarity=0.409  Sum_probs=18.9

Q ss_pred             EEEEcCCCCChHHHHHHhhcC
Q 030289           19 ILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        19 i~i~G~~~~GKStli~~l~~~   39 (180)
                      |++.|++|+|||++++.+...
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            689999999999999998854

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.53  E-value=6.3e-05  Score=50.69  Aligned_cols=25  Identities=24%  Similarity=0.409  Sum_probs=21.8

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      ..-+++.||+|||||||+++|....
T Consensus         4 G~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           4 GLLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhc
Confidence            4568899999999999999998665

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.52  E-value=7.8e-05  Score=47.50  Aligned_cols=21  Identities=38%  Similarity=0.444  Sum_probs=18.8

Q ss_pred             EEEEcCCCCChHHHHHHhhcC
Q 030289           19 ILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        19 i~i~G~~~~GKStli~~l~~~   39 (180)
                      |+|.|.+||||||+++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999988754

...

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.52  E-value=8.6e-05  Score=50.31  Aligned_cols=25  Identities=16%  Similarity=0.348  Sum_probs=21.2

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ...-.++++|++|+|||||++.+..
T Consensus        19 ~~G~~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          19 PLNVLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhh
Confidence            4456789999999999999998863

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.51  E-value=9.8e-05  Score=51.40  Aligned_cols=26  Identities=19%  Similarity=0.439  Sum_probs=21.8

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      .+..-|+|+|++|||||||++.|...
T Consensus        11 ~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         11 AKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            45566889999999999999999743

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=97.51  E-value=8.5e-05  Score=50.05  Aligned_cols=24  Identities=25%  Similarity=0.260  Sum_probs=20.4

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      .=.++|+|++|+|||||+|-+.+-
T Consensus        25 ge~vAi~GpSGaGKSTLLnLIAGF   48 (231)
T COG3840          25 GEIVAILGPSGAGKSTLLNLIAGF   48 (231)
T ss_pred             CcEEEEECCCCccHHHHHHHHHhc
Confidence            446899999999999999987653

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=97.51  E-value=7.9e-05  Score=48.35  Aligned_cols=25  Identities=32%  Similarity=0.477  Sum_probs=23.0

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      +...||+|.|.||+|||||..++..
T Consensus         5 r~~PNILvtGTPG~GKstl~~~lae   29 (176)
T KOG3347|consen    5 RERPNILVTGTPGTGKSTLAERLAE   29 (176)
T ss_pred             hcCCCEEEeCCCCCCchhHHHHHHH
Confidence            6789999999999999999999973

>PRK06547 hypothetical protein; Provisional

Probab=97.50  E-value=0.00016  Score=48.80  Aligned_cols=30  Identities=27%  Similarity=0.299  Sum_probs=24.5

Q ss_pred             hhcccCccEEEEEcCCCCChHHHHHHhhcC
Q 030289           10 MLFARKEMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        10 ~~~~~~~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      .........|+|.|++||||||+.+.|...
T Consensus         9 ~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~   38 (172)
T PRK06547          9 RLCGGGMITVLIDGRSGSGKTTLAGALAAR   38 (172)
T ss_pred             HhhcCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            344567788889999999999999998753

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.50  E-value=8.8e-05  Score=50.35  Aligned_cols=22  Identities=27%  Similarity=0.376  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHhhcC
Q 030289           18 RILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~   39 (180)
                      -|+++|++|||||||++.|...
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~   24 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEE   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHcc
Confidence            4789999999999999999864

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.49  E-value=9e-05  Score=50.26  Aligned_cols=27  Identities=30%  Similarity=0.239  Sum_probs=22.4

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      ...-.++++|++|+|||||++.+.+-.
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          23 KEGEVIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            345578999999999999999888654

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.49  E-value=9e-05  Score=51.82  Aligned_cols=21  Identities=33%  Similarity=0.521  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChHHHHHHhhc
Q 030289           18 RILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~   38 (180)
                      -|+++|++|+|||||+..+.+
T Consensus        32 ~VaiIG~SGaGKSTLLR~lng   52 (258)
T COG3638          32 MVAIIGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999988875

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.49  E-value=8.3e-05  Score=51.36  Aligned_cols=21  Identities=29%  Similarity=0.297  Sum_probs=18.6

Q ss_pred             EEEEcCCCCChHHHHHHhhcC
Q 030289           19 ILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        19 i~i~G~~~~GKStli~~l~~~   39 (180)
                      |+|.|++|||||||++.|...
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999998653

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.48  E-value=0.00011  Score=50.20  Aligned_cols=31  Identities=29%  Similarity=0.253  Sum_probs=24.6

Q ss_pred             hhhcccCccEEEEEcCCCCChHHHHHHhhcCC
Q 030289            9 KMLFARKEMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus         9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      +... +..-.++|+|++|+|||||++.+++--
T Consensus        19 ~~~v-~~g~~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          19 WLAV-EARKNILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             HHHH-hCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            3444 446789999999999999999988543

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=97.47  E-value=0.00011  Score=51.28  Aligned_cols=24  Identities=29%  Similarity=0.289  Sum_probs=21.2

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      . .++++|++|+|||||++.+.+-.
T Consensus        26 g-~~~i~G~nGsGKSTLl~~l~Gl~   49 (211)
T cd03264          26 G-MYGLLGPNGAGKTTLMRILATLT   49 (211)
T ss_pred             C-cEEEECCCCCCHHHHHHHHhCCC
Confidence            5 88999999999999999888643

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.47  E-value=0.00011  Score=50.36  Aligned_cols=25  Identities=20%  Similarity=0.286  Sum_probs=21.1

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      ..=|+++||+|||||||+++|....
T Consensus         4 ~~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          4 PKLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhcC
Confidence            3458899999999999999997643

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=97.46  E-value=0.00011  Score=51.42  Aligned_cols=26  Identities=31%  Similarity=0.326  Sum_probs=21.7

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      ..=.++++|++|+|||||++.+.+-.
T Consensus        29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          29 KGEFVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence            34468999999999999999888653

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK13949 shikimate kinase; Provisional

Probab=97.45  E-value=0.00012  Score=49.33  Aligned_cols=21  Identities=48%  Similarity=0.564  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHHHhhc
Q 030289           18 RILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~   38 (180)
                      +|+++|++||||||+...|..
T Consensus         3 ~I~liG~~GsGKstl~~~La~   23 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALAR   23 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999988764

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.45  E-value=0.00012  Score=51.99  Aligned_cols=26  Identities=19%  Similarity=0.224  Sum_probs=21.8

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      ..=.++++|++|+|||||++.+.+-.
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          25 RGEILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34468999999999999999998654

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14531 adenylate kinase; Provisional

Probab=97.45  E-value=0.00013  Score=49.82  Aligned_cols=23  Identities=35%  Similarity=0.439  Sum_probs=20.1

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhc
Q 030289           16 EMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      +.+|+++|+|||||||+..+|..
T Consensus         2 ~~~i~i~G~pGsGKsT~~~~la~   24 (183)
T PRK14531          2 KQRLLFLGPPGAGKGTQAARLCA   24 (183)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            34899999999999999988864

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.45  E-value=0.00012  Score=47.49  Aligned_cols=21  Identities=38%  Similarity=0.561  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCChHHHHHHhhc
Q 030289           18 RILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~   38 (180)
                      .|+++|++|+|||+|++.+..
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~   21 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAA   21 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999998863

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PRK14532 adenylate kinase; Provisional

Probab=97.44  E-value=0.00012  Score=50.05  Aligned_cols=22  Identities=36%  Similarity=0.451  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCChHHHHHHhhc
Q 030289           17 MRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ++|+++|+|||||||+..+|..
T Consensus         1 ~~i~~~G~pGsGKsT~a~~la~   22 (188)
T PRK14532          1 MNLILFGPPAAGKGTQAKRLVE   22 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999998874

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=97.44  E-value=0.00012  Score=51.20  Aligned_cols=26  Identities=35%  Similarity=0.362  Sum_probs=21.8

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      ..=.++++|++|+|||||++.+.+-.
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        28 KGEMVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34568999999999999999888653

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.44  E-value=0.00013  Score=50.96  Aligned_cols=26  Identities=35%  Similarity=0.363  Sum_probs=21.8

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      ..-.++++|++|+|||||++.+.+-.
T Consensus        26 ~G~~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          26 KGEFVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            34568899999999999999888654

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=97.44  E-value=0.00012  Score=50.28  Aligned_cols=26  Identities=27%  Similarity=0.373  Sum_probs=21.5

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      ..=.++|+|++|+|||||++.+.+-.
T Consensus        17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        17 RGEVLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34468999999999999998887654

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.44  E-value=0.00014  Score=49.59  Aligned_cols=22  Identities=32%  Similarity=0.268  Sum_probs=19.5

Q ss_pred             ccEEEEEcCCCCChHHHHHHhh
Q 030289           16 EMRILMVGLDAAGKTTILYKLK   37 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~   37 (180)
                      ...|+++|++||||||+++.+.
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~   24 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIV   24 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3468899999999999999887

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=97.43  E-value=0.0001  Score=51.86  Aligned_cols=20  Identities=35%  Similarity=0.320  Sum_probs=18.1

Q ss_pred             EEEEcCCCCChHHHHHHhhc
Q 030289           19 ILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        19 i~i~G~~~~GKStli~~l~~   38 (180)
                      |+|.|++|||||||++.|..
T Consensus         2 igI~G~sGSGKTTla~~L~~   21 (220)
T cd02025           2 IGIAGSVAVGKSTTARVLQA   21 (220)
T ss_pred             EEeeCCCCCCHHHHHHHHHH
Confidence            68999999999999988874

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.43  E-value=0.00013  Score=50.69  Aligned_cols=26  Identities=31%  Similarity=0.180  Sum_probs=22.0

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      ..=.++++|++|+|||||++.+.+-.
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          25 AGEIIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            44578999999999999999888654

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK00300 gmk guanylate kinase; Provisional

Probab=97.42  E-value=0.00016  Score=50.19  Aligned_cols=26  Identities=31%  Similarity=0.469  Sum_probs=22.1

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      +..--|+|+|++|||||||++.|...
T Consensus         3 ~~g~~i~i~G~sGsGKstl~~~l~~~   28 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLVKALLER   28 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            34567999999999999999988754

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.42  E-value=0.00013  Score=50.39  Aligned_cols=23  Identities=30%  Similarity=0.400  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCC
Q 030289           18 RILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      =.+|+||+|+|||||+..|++..
T Consensus        29 v~ailGPNGAGKSTlLk~LsGel   51 (259)
T COG4559          29 VLAILGPNGAGKSTLLKALSGEL   51 (259)
T ss_pred             EEEEECCCCccHHHHHHHhhCcc
Confidence            36799999999999999998754

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=97.42  E-value=0.00014  Score=50.84  Aligned_cols=26  Identities=27%  Similarity=0.262  Sum_probs=21.5

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      ..=.++++|++|+|||||++.+.+-.
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03259          25 PGEFLALLGPSGCGKTTLLRLIAGLE   50 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            34468899999999999999888643

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=97.42  E-value=0.00093  Score=48.73  Aligned_cols=105  Identities=9%  Similarity=0.105  Sum_probs=59.3

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCC---------------------
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDK---------------------   72 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~---------------------   72 (180)
                      .+-.+.+++|++|-|||+++++|...-.....+.         ...+.+..+.+|....                     
T Consensus        59 ~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~---------~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~  129 (302)
T PF05621_consen   59 HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDED---------AERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDR  129 (302)
T ss_pred             cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCC---------CccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCC
Confidence            3446799999999999999999986442221111         0123555666654111                     


Q ss_pred             ---ChhhHHhhccccCEEEEEEECC-C--hhhHHHHHHHHHHHhcccccCCCeEEEEEecC
Q 030289           73 ---IRPLWRHYFQNTHGLIFVVDSN-D--RERIGEAKDELHRMLSEDELREAVLLVFANKQ  127 (180)
Q Consensus        73 ---~~~~~~~~~~~~~~~i~v~d~~-~--~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~  127 (180)
                         ........++....=++++|=- +  ..+.......+..+...-+.-.+|+|.||++-
T Consensus       130 ~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~  190 (302)
T PF05621_consen  130 VAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE  190 (302)
T ss_pred             HHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence               1222345566778889999832 1  12222333333322222234578999998763

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>PTZ00088 adenylate kinase 1; Provisional

Probab=97.41  E-value=0.00016  Score=51.13  Aligned_cols=24  Identities=25%  Similarity=0.364  Sum_probs=20.9

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhc
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ..++|+|+|+|||||||+...|..
T Consensus         5 ~~mrIvl~G~PGsGK~T~a~~La~   28 (229)
T PTZ00088          5 GPLKIVLFGAPGVGKGTFAEILSK   28 (229)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            347899999999999999988854

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=97.41  E-value=0.00014  Score=50.78  Aligned_cols=26  Identities=35%  Similarity=0.323  Sum_probs=21.7

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      ..=.++++|++|+|||||++.+.+-.
T Consensus        27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        27 KGEFLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34568999999999999998887643

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=97.41  E-value=0.0018  Score=46.86  Aligned_cols=33  Identities=30%  Similarity=0.390  Sum_probs=25.2

Q ss_pred             HhhhcccCccEEEEEcCCCCChHHHHHHhhcCC
Q 030289            8 LKMLFARKEMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus         8 ~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      +........=.|+|.|++|+||||+++.+...-
T Consensus        72 l~~~~~~~~GlilisG~tGSGKTT~l~all~~i  104 (264)
T cd01129          72 FRKLLEKPHGIILVTGPTGSGKTTTLYSALSEL  104 (264)
T ss_pred             HHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhh
Confidence            344555555569999999999999999887543

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=97.41  E-value=0.00014  Score=51.02  Aligned_cols=26  Identities=27%  Similarity=0.222  Sum_probs=21.9

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      ..=.++++|++|+|||||++.+.+-.
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (220)
T cd03265          25 RGEIFGLLGPNGAGKTTTIKMLTTLL   50 (220)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44568999999999999999888653

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.41  E-value=0.0015  Score=46.19  Aligned_cols=110  Identities=17%  Similarity=0.207  Sum_probs=60.0

Q ss_pred             cEEEEEcCCCC--ChHHHHHHhhcCCcccccc---ccceeEEEEEEcC--eEEEEEEcCC-CCCChhhHHhhccccCEEE
Q 030289           17 MRILMVGLDAA--GKTTILYKLKLGEIVTTIP---TIGFNVETVEYKN--VSFTVWDVGG-QDKIRPLWRHYFQNTHGLI   88 (180)
Q Consensus        17 ~~i~i~G~~~~--GKStli~~l~~~~~~~~~~---t~~~~~~~~~~~~--~~~~i~D~~G-~~~~~~~~~~~~~~~~~~i   88 (180)
                      .-++++|.+|+  ||.+|.++|....+.....   .+.+.--+++.+-  ..+.+.-.+- ++++.. .........+++
T Consensus         5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lp-n~~~a~pl~a~v   83 (418)
T KOG4273|consen    5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLP-NAEIAEPLQAFV   83 (418)
T ss_pred             ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccC-CcccccceeeEE
Confidence            34689999999  9999999998766332221   1111111111110  0111111111 111111 111223356789


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcccccCCCe-EEEEEecCCCCC
Q 030289           89 FVVDSNDRERIGEAKDELHRMLSEDELREAV-LLVFANKQDLPN  131 (180)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iiiv~nK~D~~~  131 (180)
                      .+||.+....+..+..|+..-    ...+.. ++.++||.|..+
T Consensus        84 mvfdlse~s~l~alqdwl~ht----dinsfdillcignkvdrvp  123 (418)
T KOG4273|consen   84 MVFDLSEKSGLDALQDWLPHT----DINSFDILLCIGNKVDRVP  123 (418)
T ss_pred             EEEeccchhhhHHHHhhcccc----ccccchhheeccccccccc
Confidence            999999888888888886532    222222 456779999654

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=97.41  E-value=0.00014  Score=52.74  Aligned_cols=27  Identities=37%  Similarity=0.391  Sum_probs=23.5

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      +.+-+|+|.|++|+||||+++.+...-
T Consensus       125 ~~~~~ili~G~tGSGKTT~l~all~~i  151 (270)
T PF00437_consen  125 RGRGNILISGPTGSGKTTLLNALLEEI  151 (270)
T ss_dssp             HTTEEEEEEESTTSSHHHHHHHHHHHC
T ss_pred             ccceEEEEECCCccccchHHHHHhhhc
Confidence            348999999999999999999998544

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	180
3aq4_A	184	Molecular Insights Into Plant Cell Proliferation Di		3e-89
1rrg_A	181	Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com		6e-86
1hur_A	180	Human Adp-Ribosylation Factor 1 Complexed With Gdp,		2e-85
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		9e-85
1re0_A	164	Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe		2e-82
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		2e-82
1j2j_A	166	Crystal Structure Of Gga1 Gat N-terminal Region In		2e-81
2b6h_A	192	Structure Of Human Adp-Ribosylation Factor 5 Length		2e-81
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		2e-79
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		2e-78
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		3e-78
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		3e-77
2ksq_A	181	The Myristoylated Yeast Arf1 In A Gtp And Bicelle B		1e-74
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		2e-74
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		3e-71
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		1e-70
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		1e-70
2a5g_A	175	Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length		3e-70
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		3e-68
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		4e-68
3vhx_A	172	The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi		7e-68
2w83_A	165	Crystal Structure Of The Arf6 Gtpase In Complex Wit		7e-68
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		1e-65
1r4a_A	165	Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac		7e-56
1moz_A	183	Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo		2e-55
4dcn_A	166	Crystal Structure Analysis Of The Arfaptin2 Bar Dom		7e-55
1yzg_A	179	Structure Of Human Adp-ribosylation Factor-like 8 L		6e-50
2x77_A	189	Crystal Structure Of Leishmania Major Adp Ribosylat		5e-49
1z6y_A	179	Structure Of Human Adp-Ribosylation Factor-Like 5 L		6e-49
1zj6_A	187	Crystal Structure Of Human Arl5 Length = 187		7e-49
1upt_A	171	Structure Of A Complex Of The Golgin-245 Grip Domai		1e-47
2h16_A	183	Structure Of Human Adp-Ribosylation Factor-Like 5 (		6e-46
2h17_A	181	Structure Of Human Adp-Ribosylation Factor-Like 5 (		9e-46
1ksg_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt		4e-45
1ksh_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati		6e-45
3doe_A	192	Complex Of Arl2 And Bart, Crystal Form 1 Length = 1		8e-45
4gok_B	169	The Crystal Structure Of Arl2gppnhp In Complex With		4e-42
1fzq_A	181	Crystal Structure Of Murine Arl3-Gdp Length = 181		2e-39
4goj_A	189	The Crystal Structure Of Full Length Arl3gppnhp In		2e-39
1ksj_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme		4e-39
3bh7_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		6e-38
3bh6_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		6e-37
2h57_A	190	Crystal Structure Of Human Adp-Ribosylation Factor-		2e-33
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		6e-27
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		7e-27
4bas_A	199	Structure Of The Arl6 Bbs3 Small Gtpase From Trypan		3e-26
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		1e-25
1m2o_B	190	Crystal Structure Of The Sec23-Sar1 Complex Length		2e-23
2qtv_B	167	Structure Of Sec23-Sar1 Complexed With The Active F		3e-23
2fmx_A	195	An Open Conformation Of Switch I Revealed By Sar1-g		1e-20
1f6b_A	198	Crystal Structure Of Sar1-Gdp Complex Length = 198		1e-20
2fa9_A	189	The Crystal Structure Of Sar1[h79g]-gdp Provides In		2e-20
2gao_A	208	Crystal Structure Of Human Sar1a In Complex With Gd		5e-20
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		2e-09
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		2e-09
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		2e-09
4fmc_B	171	Espg-Rab1 Complex Length = 171		2e-09
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		3e-09
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		3e-09
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		3e-09
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		3e-09
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		4e-09
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		7e-09
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		8e-09
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		9e-09
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		2e-08
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		2e-08
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		2e-08
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		3e-08
4fmc_F	117	Espg-Rab1 Complex Length = 117		3e-08
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		4e-08
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		5e-08
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		5e-08
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		1e-07
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		1e-07
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		2e-07
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		2e-07
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		2e-07
1svk_A	353	Structure Of The K180p Mutant Of Gi Alpha Subunit B		5e-07
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		7e-07
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		8e-07
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		2e-06
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		2e-06
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		3e-06
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		3e-06
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		3e-06
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		4e-06
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		4e-06
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		4e-06
2ihb_A	323	Crystal Structure Of The Heterodimeric Complex Of H		5e-06
4g5o_A	330	Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX Length		5e-06
3d7m_A	354	Crystal Structure Of The G Protein Fast-Exchange Do		6e-06
4g5r_A	330	Structure Of Lgn Gl4GALPHAI3 COMPLEX Length = 330		6e-06
3onw_A	328	Structure Of A G-Alpha-I1 Mutant With Enhanced Affi		6e-06
3ffb_A	360	Crystal Structure Of A Fast Activating G Protein Mu		6e-06
1kjy_A	325	Crystal Structure Of Human G[alpha]i1 Bound To The		6e-06
2ik8_A	324	Crystal Structure Of The Heterodimeric Complex Of H		6e-06
1as0_A	353	Gtp-Gamma-S Bound G42v Gia1 Length = 353		7e-06
2gtp_A	323	Crystal Structure Of The Heterodimeric Complex Of H		7e-06
1gp2_A	353	G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 Wi		7e-06
1fqj_A	325	Crystal Structure Of The Heterotrimeric Complex Of		7e-06
2xns_A	327	Crystal Structure Of Human G Alpha I1 Bound To A De		7e-06
3qi2_A	328	A Galpha P-Loop Mutation Prevents Transition To The		7e-06
2zjy_A	356	Structure Of The K349p Mutant Of Gi Alpha 1 Subunit		7e-06
4g5q_A	330	Structure Of Lgn Gl4GALPHAI1 COMPLEX Length = 330		7e-06
1y3a_A	329	Structure Of G-Alpha-I1 Bound To A Gdp-Selective Pe		7e-06
3qe0_A	325	A Galpha-I1 P-Loop Mutation Prevents Transition To		7e-06
2g83_A	313	Structure Of Activated G-alpha-i1 Bound To A Nucleo		7e-06
1bh2_A	315	A326s Mutant Of An Inhibitory Alpha Subunit Length		7e-06
2ode_A	350	Crystal Structure Of The Heterodimeric Complex Of H		7e-06
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		7e-06
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		7e-06
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		8e-06
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		8e-06
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		1e-05
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		1e-05
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		1e-05
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		1e-05
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		2e-05
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		2e-05
3v00_C	356	Studies Of A Constitutively Active G-Alpha Subunit		2e-05
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		2e-05
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		2e-05
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		2e-05
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		2e-05
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		2e-05
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		2e-05
3ums_A	354	Crystal Structure Of The G202a Mutant Of Human G-Al		3e-05
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		3e-05
1gg2_A	353	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		3e-05
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		3e-05
3ah8_A	355	Structure Of Heterotrimeric G Protein Galpha-Q Beta		4e-05
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		4e-05
4ekc_A	347	Structure Of Human Regulator Of G Protein Signaling		4e-05
2bcj_Q	353	Crystal Structure Of G Protein-coupled Receptor Kin		4e-05
3ohm_A	327	Crystal Structure Of Activated G Alpha Q Bound To I		4e-05
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		4e-05
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		4e-05
4gnk_A	353	Crystal Structure Of Galphaq In Complex With Full-l		4e-05
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		4e-05
3umr_A	354	Crystal Structure Of The G202d Mutant Of Human G-Al		5e-05
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		5e-05
1gil_A	353	Structure Of Active Conformations Of Gia1 And The M		6e-05
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		7e-05
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		9e-05
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		9e-05
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		1e-04
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		1e-04
1got_A	350	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		1e-04
3c7k_A	333	Molecular Architecture Of Galphao And The Structura		1e-04
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		2e-04
1shz_A	340	Crystal Structure Of The P115rhogef Rgrgs Domain In		2e-04
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		2e-04
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		2e-04
1zcb_A	362	Crystal Structure Of G Alpha 13 In Complex With Gdp		3e-04
3cx7_A	338	Crystal Structure Of Pdzrhogef Rgrgs Domain In A Co		3e-04
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		5e-04
2fh5_B	214	The Structure Of The Mammalian Srp Receptor Length		5e-04
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		6e-04
1tnd_A	324	The 2.2 Angstroms Crystal Structure Of Transducin-A		6e-04

>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184

Iteration: 1
 Score =  323 bits (828), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 151/181 (83%), Positives = 169/181 (93%), Gaps = 1/181 (0%)
Query: 1   MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 59
           MG+   +L   LFA+KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 4   MGLSFGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 63
Query: 60  VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV 119
           +SFTVWDVGGQDKIRPLWRHYFQNT GLIFVVDSNDR+R+ EA+DELHRML+EDELR+AV
Sbjct: 64  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 123
Query: 120 LLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
           LLVFANKQDLPNAM+ +E+TDKLGLHSLRQR WYIQ+ CATSG+GLYEGLDWLS+N+++K
Sbjct: 124 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 183
Query: 180 G 180
Sbjct: 184 A 184

>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181

Iteration: 1
 Score =  312 bits (800), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 148/177 (83%), Positives = 162/177 (91%), Gaps = 1/177 (0%)
Query: 1   MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 59
           MG + + L K LF +KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 60  VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV 119
           +SFTVWDVGGQDKIRPLWRHYFQNT GLIFVVDSNDRER+ EA++EL RML+EDELR+AV
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 120
Query: 120 LLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
           LLVFANKQDLPNAM+ +E+TDKLGLHSLR R WYIQA CATSG GLYEGLDWLS+ +
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 177

>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180

Iteration: 1
 Score =  310 bits (795), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 145/169 (85%), Positives = 157/169 (92%)
Query: 8   LKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDV 67
            K LF +KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN+SFTVWDV
Sbjct: 8   FKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 67
Query: 68  GGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQ 127
           GGQDKIRPLWRHYFQNT GLIFVVDSNDRER+ EA++EL RML+EDELR+AVLLVFANKQ
Sbjct: 68  GGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQ 127
Query: 128 DLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
           DLPNAM+ +E+TDKLGLHSLR R WYIQA CATSG GLYEGLDWLS+ +
Sbjct: 128 DLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 176

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score =  308 bits (790), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 144/166 (86%), Positives = 156/166 (93%)
Query: 11  LFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQ 70
           LF +KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN+SFTVWDVGGQ
Sbjct: 160 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ 219
Query: 71  DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP 130
           DKIRPLWRHYFQNT GLIFVVDSNDRER+ EA++EL RML+EDELR+AVLLVFANKQDLP
Sbjct: 220 DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 279
Query: 131 NAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
           NAM+ +E+TDKLGLHSLR R WYIQA CATSG GLYEGLDWLS+ +
Sbjct: 280 NAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 325

>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164

Iteration: 1
 Score =  301 bits (770), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 140/160 (87%), Positives = 151/160 (94%)
Query: 17  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPL 76
           MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN+SFTVWDVGGQDKIRPL
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 60
Query: 77  WRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVS 136
           WRHYFQNT GLIFVVDSNDRER+ EA++EL RML+EDELR+AVLLVFANKQDLPNAM+ +
Sbjct: 61  WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAA 120
Query: 137 EVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
           E+TDKLGLHSLR R WYIQA CATSG GLYEGLDWLS+ +
Sbjct: 121 EITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score =  300 bits (769), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 142/180 (78%), Positives = 158/180 (87%), Gaps = 1/180 (0%)
Query: 1   MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 59
           MG+ IS L   LF +K+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1   MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 60  VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV 119
           + FTVWDVGGQD+IRPLW+HYFQNT GLIFVVDSNDRERI E  DEL +ML  DELR+AV
Sbjct: 61  ICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAV 120
Query: 120 LLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
           LL+FANKQDLPNAM++SE+TDKLGL SLR R WY+QA CAT G GLYEGLDWLS+ +S +
Sbjct: 121 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180

>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166

Iteration: 1
 Score =  297 bits (761), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 139/160 (86%), Positives = 150/160 (93%)
Query: 17  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPL 76
           MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN+SFTVWDVGG DKIRPL
Sbjct: 3   MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGLDKIRPL 62
Query: 77  WRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVS 136
           WRHYFQNT GLIFVVDSNDRER+ EA++EL RML+EDELR+AVLLVFANKQDLPNAM+ +
Sbjct: 63  WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAA 122
Query: 137 EVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
           E+TDKLGLHSLR R WYIQA CATSG GLYEGLDWLS+ +
Sbjct: 123 EITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 162

>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192

Iteration: 1
 Score =  297 bits (761), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 140/178 (78%), Positives = 155/178 (87%), Gaps = 3/178 (1%)
Query: 2   GMVISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVS 61
           G + SR+   F +K+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN+ 
Sbjct: 18  GSLFSRI---FGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNIC 74
Query: 62  FTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLL 121
           FTVWDVGGQDKIRPLWRHYFQNT GLIFVVDSNDRER+ E+ DEL +ML EDELR+AVLL
Sbjct: 75  FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLL 134
Query: 122 VFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
           VFANKQD+PNAM VSE+TDKLGL  LR R WY+QA CAT G GLY+GLDWLS  +S +
Sbjct: 135 VFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 192

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score =  290 bits (743), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 133/175 (76%), Positives = 156/175 (89%)
Query: 2   GMVISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVS 61
           G + S L  L  +KEMRILMVGLDAAGKT+ILYKLKLGEIVTTIPTIGFNVETVEYKN+S
Sbjct: 3   GSMGSWLSKLLGKKEMRILMVGLDAAGKTSILYKLKLGEIVTTIPTIGFNVETVEYKNIS 62
Query: 62  FTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLL 121
           FTVWDVGGQDKIRPLWRHY+QNT  +IFVVDSNDR+RIGEA++EL +ML+EDE+R A+LL
Sbjct: 63  FTVWDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILL 122
Query: 122 VFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
           VFANK DLP AMS+SEVT+KLGL +++ R+WY Q +CAT+G GLYEGLDWL+ N+
Sbjct: 123 VFANKHDLPQAMSISEVTEKLGLQTIKNRKWYCQTSCATNGDGLYEGLDWLADNL 177

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score =  287 bits (735), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 129/178 (72%), Positives = 163/178 (91%), Gaps = 1/178 (0%)
Query: 1   MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 59
           MG+ +SRL   LF +K++RILMVGLDAAGKTTILYK+KLGE+VTTIPTIGFNVETVE++N
Sbjct: 1   MGLYVSRLFNRLFQKKDVRILMVGLDAAGKTTILYKVKLGEVVTTIPTIGFNVETVEFRN 60
Query: 60  VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV 119
           +SFTVWDVGGQDKIRPLWRHY+ NT GLIFVVDSNDRERI +A++ELHRM++E+EL++A+
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAI 120
Query: 120 LLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVS 177
           +LVFANKQDLPNAMS +EVT+KL L+++R+R W+IQ+ CAT G GLYEG DWL+++++
Sbjct: 121 ILVFANKQDLPNAMSAAEVTEKLHLNTIRERNWFIQSTCATRGDGLYEGFDWLTTHLN 178

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score =  287 bits (734), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 131/177 (74%), Positives = 157/177 (88%), Gaps = 1/177 (0%)
Query: 1   MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 59
           MG+  S+L   LF  KEMRILMVGLD AGKTT+LYKLKLGE++TTIPTIGFNVETV+YKN
Sbjct: 1   MGLYASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKN 60
Query: 60  VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV 119
           +SFTVWDVGGQD+IR LWRHY++NT G+IFV+DSNDR RIGEA++ + RML+EDELR AV
Sbjct: 61  ISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAV 120
Query: 120 LLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
            LVFANKQDLP AMS +E+T+KLGLHS+R R W+IQ+ CATSG+GLYEGL+WLS+N+
Sbjct: 121 WLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQSTCATSGEGLYEGLEWLSNNL 177

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score =  283 bits (724), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 130/176 (73%), Positives = 155/176 (88%), Gaps = 1/176 (0%)
Query: 2   GMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNV 60
           G+  S+L   LF  KEMRILMVGLD AGKTT+LYKLKLGE++TTIPTIGFNVETV+YKN+
Sbjct: 2   GLFASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNI 61
Query: 61  SFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVL 120
           SFTVWDVGGQD+IR LWRHY++NT G+IFVVDSNDR RIGEA++ + RML+EDELR A  
Sbjct: 62  SFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAW 121
Query: 121 LVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
           LVFANKQDLP AMS +E+T+KLGLHS+R R W+IQA CATSG+GLYEGL+WLS+++
Sbjct: 122 LVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSNSL 177

>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181

Iteration: 1
 Score =  275 bits (702), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 127/174 (72%), Positives = 149/174 (85%), Gaps = 1/174 (0%)
Query: 2   GMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNV 60
           G+  S+L   LF  KEMRILMVGLD AGKTT+LYKLKLGE++TTIPTIGFNVE V+Y N+
Sbjct: 2   GLFASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVECVQYCNI 61
Query: 61  SFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVL 120
           SFTVWDVGGQD+IR LWRHY+ NT G+IFVVDSNDR RIGEA++ + RML+EDEL  A  
Sbjct: 62  SFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAW 121
Query: 121 LVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSS 174
           LVFANKQDLP AMS +E+T+KLGLHS+R R W+IQA CATSG+GLYEGL+WLS+
Sbjct: 122 LVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSN 175

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score =  274 bits (701), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 123/160 (76%), Positives = 146/160 (91%)
Query: 17  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPL 76
           MRILMVGLD AGKTT+LYKLKLGE++TTIPTIGFNVETV+YKN+SFTVWDVGGQD+IR L
Sbjct: 1   MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSL 60
Query: 77  WRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVS 136
           WRHY++NT G+IFVVDSNDR RIGEA++ + RML+EDELR A  LVFANKQDLP AMS +
Sbjct: 61  WRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAA 120
Query: 137 EVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
           E+T+KLGLHS+R R W+IQA CATSG+GLYEGL+WLS+++
Sbjct: 121 EITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSNSL 160

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score =  263 bits (673), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 121/178 (67%), Positives = 147/178 (82%), Gaps = 3/178 (1%)
Query: 1   MGMVISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNV 60
           MG V+S++   F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKNV
Sbjct: 1   MGKVLSKI---FGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNV 57
Query: 61  SFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVL 120
            F VWDVGGQDKIRPLWRHY+  T GLIFVVD  DR+RI EA+ ELHR++++ E+R+A++
Sbjct: 58  KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 117
Query: 121 LVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSA 178
           L+FANKQDLP+AM   E+ +KLGL  +R R WY+Q +CATSG GLYEGL WL+SN  +
Sbjct: 118 LIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 175

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score =  261 bits (668), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 117/168 (69%), Positives = 141/168 (83%)
Query: 12  FARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQD 71
            + KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKNV F VWDVGGQD
Sbjct: 318 LSNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQD 377
Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131
           KIRPLWRHY+  T GLIFVVD  DR+RI EA+ ELHR++++ E+R+A++L+FANKQDLP+
Sbjct: 378 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 437
Query: 132 AMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
           AM   E+ +KLGL  +R R WY+Q +CATSG GLYEGL WL+SN  +K
Sbjct: 438 AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKSK 485

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score =  261 bits (668), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 120/177 (67%), Positives = 146/177 (82%), Gaps = 3/177 (1%)
Query: 2   GMVISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVS 61
           G V+S++   F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKNV 
Sbjct: 1   GKVLSKI---FGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVK 57
Query: 62  FTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLL 121
           F VWDVGGQDKIRPLWRHY+  T GLIFVVD  DR+RI EA+ ELHR++++ E+R+A++L
Sbjct: 58  FNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIIL 117
Query: 122 VFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSA 178
           +FANKQDLP+AM   E+ +KLGL  +R R WY+Q +CATSG GLYEGL WL+SN  +
Sbjct: 118 IFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 174

>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175

Iteration: 1
 Score =  260 bits (665), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 120/178 (67%), Positives = 146/178 (82%), Gaps = 3/178 (1%)
Query: 1   MGMVISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNV 60
           MG V+S++   F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKNV
Sbjct: 1   MGKVLSKI---FGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNV 57
Query: 61  SFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVL 120
            F VWDVGG DKIRPLWRHY+  T GLIFVVD  DR+RI EA+ ELHR++++ E+R+A++
Sbjct: 58  KFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 117
Query: 121 LVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSA 178
           L+FANKQDLP+AM   E+ +KLGL  +R R WY+Q +CATSG GLYEGL WL+SN  +
Sbjct: 118 LIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 175

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score =  253 bits (647), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 114/162 (70%), Positives = 137/162 (84%)
Query: 17  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPL 76
           MRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKNV F VWDVGGQDKIRPL
Sbjct: 1   MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPL 60
Query: 77  WRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVS 136
           WRHY+  T GLIFVVD  DR+RI EA+ ELHR++++ E+R+A++L+FANKQDLP+AM   
Sbjct: 61  WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH 120
Query: 137 EVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSA 178
           E+ +KLGL  +R R WY+Q +CATSG GLYEGL WL+SN  +
Sbjct: 121 EIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 162

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score =  253 bits (646), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 114/159 (71%), Positives = 136/159 (85%)
Query: 17  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPL 76
           MRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKNV F VWDVGGQDKIRPL
Sbjct: 1   MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPL 60
Query: 77  WRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVS 136
           WRHY+  T GLIFVVD  DR+RI EA+ ELHR++++ E+R+A++L+FANKQDLP+AM   
Sbjct: 61  WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH 120
Query: 137 EVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSN 175
           E+ +KLGL  +R R WY+Q +CATSG GLYEGL WL+SN
Sbjct: 121 EIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 159

>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172

Iteration: 1
 Score =  252 bits (644), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 114/163 (69%), Positives = 137/163 (84%)
Query: 16  EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRP 75
           EMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKNV F VWDVGG DKIRP
Sbjct: 2   EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRP 61
Query: 76  LWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSV 135
           LWRHY+  T GLIFVVD  DR+RI EA+ ELHR++++ E+R+A++L+FANKQDLP+AM  
Sbjct: 62  LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP 121
Query: 136 SEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSA 178
            E+ +KLGL  +R R WY+Q +CATSG GLYEGL WL+SN  +
Sbjct: 122 HEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 164

>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165

Iteration: 1
 Score =  252 bits (644), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 114/163 (69%), Positives = 137/163 (84%)
Query: 16  EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRP 75
           EMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKNV F VWDVGG DKIRP
Sbjct: 3   EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRP 62
Query: 76  LWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSV 135
           LWRHY+  T GLIFVVD  DR+RI EA+ ELHR++++ E+R+A++L+FANKQDLP+AM  
Sbjct: 63  LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP 122
Query: 136 SEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSA 178
            E+ +KLGL  +R R WY+Q +CATSG GLYEGL WL+SN  +
Sbjct: 123 HEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 165

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score =  244 bits (624), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 111/161 (68%), Positives = 133/161 (82%)
Query: 18  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLW 77
           RIL +GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKNV F VWDVGGQDKIRPLW
Sbjct: 2   RILXLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLW 61
Query: 78  RHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSE 137
           RHY+  T GLIFVVD  DR+RI EA+ ELHR++++ E R+A++L+FANKQDLP+A    E
Sbjct: 62  RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDLPDAXKPHE 121
Query: 138 VTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSA 178
           + +KLGL  +R R WY+Q +CATSG GLYEGL WL+SN  +
Sbjct: 122 IQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 162

>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165

Iteration: 1
 Score =  212 bits (540), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 98/165 (59%), Positives = 128/165 (77%)
Query: 15  KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIR 74
           +EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+GGQ  IR
Sbjct: 1   REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIR 60
Query: 75  PLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS 134
           P WR Y+ NT  +I+VVDS DR+RIG +K EL  ML E+ELR+A+L+VFANKQD+  AM+
Sbjct: 61  PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT 120
Query: 135 VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
            SE+ + LGL +L+ R+W I    AT G GL E ++WL   + ++
Sbjct: 121 PSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 165

>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183

Iteration: 1
 Score =  211 bits (537), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 100/174 (57%), Positives = 130/174 (74%), Gaps = 2/174 (1%)
Query: 1   MGMVISRL--KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK 58
           MG + S +  K+  + KE+RIL++GLD AGKTTILY+L++GE+VTT PTIGFNVET+ YK
Sbjct: 1   MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYK 60
Query: 59  NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREA 118
           N+   VWD+GGQ  IRP WR Y+ +T  +IFVVDS D++R+  A  ELH ML E+EL++A
Sbjct: 61  NLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDA 120
Query: 119 VLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWL 172
            LLVFANKQD P A+S SEV+ +L L  L+ R W I A+ A  G+G+ EGLDWL
Sbjct: 121 ALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWL 174

>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In Complex With Arl1 Length = 166

Iteration: 1
 Score =  209 bits (532), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 97/158 (61%), Positives = 124/158 (78%)
Query: 15  KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIR 74
           +EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+GG   IR
Sbjct: 3   REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIR 62
Query: 75  PLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS 134
           P WR Y+ NT  +I+VVDS DR+RIG +K EL  ML E+ELR+A+L+VFANKQD+  AM+
Sbjct: 63  PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT 122
Query: 135 VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWL 172
            SE+ + LGL +L+ R+W I    AT G GL E ++WL
Sbjct: 123 SSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWL 160

>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179

Iteration: 1
 Score =  192 bits (489), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 83/179 (46%), Positives = 128/179 (71%)
Query: 1   MGMVISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNV 60
           MG++ ++L  LF  +E ++++VGLD AGKTTILY+  + E+V T PTIG NVE +  KN 
Sbjct: 1   MGLIFAKLWSLFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKNT 60
Query: 61  SFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVL 120
            F +WD+GGQ+ +R  W  Y+ NT  +I VVDS DRER+   K+EL+RML+ ++LR+A +
Sbjct: 61  HFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAV 120
Query: 121 LVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
           L+FANKQD+   M+ +E++  L L S++   W+IQ+ CA +G+GL +GL+W++S +  +
Sbjct: 121 LIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRIGVR 179

>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation Factor-Like 1. Length = 189

Iteration: 1
 Score =  190 bits (482), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 96/184 (52%), Positives = 140/184 (76%), Gaps = 4/184 (2%)
Query: 1   MGMVISRLK----MLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE 56
           MG  ++ LK    +L A +++R+LM+GLD AGKT+ILY+L LG++VTT+PT+G N+ET++
Sbjct: 3   MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQ 62
Query: 57  YKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELR 116
           YKN+SF VWD+GGQ  +RP WR YF +T  +I+VVDS DR+R+G AK EL+ +L EDELR
Sbjct: 63  YKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELR 122
Query: 117 EAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
           +++LL+FANKQDLP+A S +E+ ++LG+ S+  R W I  + + +G GL EG+DWL   +
Sbjct: 123 KSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERL 182
Query: 177 SAKG 180
             +G
Sbjct: 183 REQG 186

>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179

Iteration: 1
 Score =  189 bits (481), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 84/179 (46%), Positives = 128/179 (71%)
Query: 1   MGMVISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNV 60
           MG++ +R+  LF  +E ++++VGLD AGKTTILY+  + E+V T PTIG NVE +   N 
Sbjct: 1   MGILFTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNT 60
Query: 61  SFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVL 120
            F +WD+GGQ+ +R  W  Y+ NT  +I VVDS DRERI   ++EL++ML+ ++LR+A L
Sbjct: 61  RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGL 120
Query: 121 LVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
           L+FANKQD+   M+V+E++  L L S++  +W+IQA CA +G+GL +GL+W+ S +  +
Sbjct: 121 LIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIR 179

>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187

Iteration: 1
 Score =  189 bits (480), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 84/179 (46%), Positives = 128/179 (71%)
Query: 1   MGMVISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNV 60
           MG++ +R+  LF  +E ++++VGLD AGKTTILY+  + E+V T PTIG NVE +   N 
Sbjct: 1   MGILFTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNT 60
Query: 61  SFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVL 120
            F +WD+GGQ+ +R  W  Y+ NT  +I VVDS DRERI   ++EL++ML+ ++LR+A L
Sbjct: 61  RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGL 120
Query: 121 LVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
           L+FANKQD+   M+V+E++  L L S++  +W+IQA CA +G+GL +GL+W+ S +  +
Sbjct: 121 LIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIR 179

>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With Arl1 Length = 171

Iteration: 1
 Score =  185 bits (470), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 94/165 (56%), Positives = 121/165 (73%)
Query: 15  KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIR 74
           +E RIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+GG   IR
Sbjct: 6   REXRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIR 65
Query: 75  PLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS 134
           P WR Y+ NT  +I+VVDS DR+RIG +K EL   L E+ELR+A+L+VFANKQD   A +
Sbjct: 66  PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAXLEEEELRKAILVVFANKQDXEQAXT 125
Query: 135 VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
            SE  + LGL +L+ R+W I    AT G GL E  +WL   + ++
Sbjct: 126 SSEXANSLGLPALKDRKWQIFKTSATKGTGLDEAXEWLVETLKSR 170

>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183

Iteration: 1
 Score =  179 bits (455), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 79/162 (48%), Positives = 118/162 (72%)
Query: 13  ARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDK 72
           + +E ++++VGLD AGKTTILY+  + E+V T PTIG NVE +   N  F +WD+GGQ+ 
Sbjct: 19  SHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQES 78
Query: 73  IRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA 132
           +R  W  Y+ NT  +I VVDS DRERI   ++EL++ML+ ++LR+A LL+FANKQD+   
Sbjct: 79  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 138
Query: 133 MSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSS 174
           M+V+E++  L L S++  +W+IQA CA +G+GL +GL+W+ S
Sbjct: 139 MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMS 180

>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181

Iteration: 1
 Score =  179 bits (453), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 79/160 (49%), Positives = 117/160 (73%)
Query: 15  KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIR 74
           +E ++++VGLD AGKTTILY+  + E+V T PTIG NVE +   N  F +WD+GGQ+ +R
Sbjct: 20  QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLR 79
Query: 75  PLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS 134
             W  Y+ NT  +I VVDS DRERI   ++EL++ML+ ++LR+A LL+FANKQD+   M+
Sbjct: 80  SSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT 139
Query: 135 VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSS 174
           V+E++  L L S++  +W+IQA CA +G+GL +GL+W+ S
Sbjct: 140 VAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMS 179

>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186

Iteration: 1
 Score =  176 bits (447), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 82/179 (45%), Positives = 121/179 (67%)
Query: 1   MGMVISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNV 60
           MG++    KM    +E+R+LM+GLD AGKTTIL K    ++ T  PT+GFN++T+E++  
Sbjct: 3   MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGF 62
Query: 61  SFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVL 120
              +WDVGGQ  +R  WR+YF++T GLI+VVDS DR+R+ + + EL  +L E+ L  A L
Sbjct: 63  KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL 122
Query: 121 LVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
           L+FANKQDLP A+S + + + L L S+R   W IQ   A +G+ L  G+DWL  ++S++
Sbjct: 123 LIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181

>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186

Iteration: 1
 Score =  176 bits (446), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 82/179 (45%), Positives = 121/179 (67%)
Query: 1   MGMVISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNV 60
           MG++    KM    +E+R+LM+GLD AGKTTIL K    ++ T  PT+GFN++T+E++  
Sbjct: 3   MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGF 62
Query: 61  SFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVL 120
              +WDVGGQ  +R  WR+YF++T GLI+VVDS DR+R+ + + EL  +L E+ L  A L
Sbjct: 63  KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL 122
Query: 121 LVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
           L+FANKQDLP A+S + + + L L S+R   W IQ   A +G+ L  G+DWL  ++S++
Sbjct: 123 LIFANKQDLPGALSXNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181

>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192

Iteration: 1
 Score =  176 bits (445), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 83/179 (46%), Positives = 121/179 (67%)
Query: 1   MGMVISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNV 60
           MG++    KM    +E+R+LM+GLD AGKTTIL K    +I T  PT+GFN++T+E++  
Sbjct: 1   MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGF 60
Query: 61  SFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVL 120
              +WDVGGQ  +R  WR+YF++T GLI+VVDS DR+R+ + + EL  +L E+ L  A L
Sbjct: 61  KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL 120
Query: 121 LVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
           L+FANKQDLP A+S + + + L L S+R   W IQ   A +G+ L  G+DWL  ++S++
Sbjct: 121 LIFANKQDLPGALSSNAIREVLELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 179

>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169

Iteration: 1
 Score =  167 bits (422), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 76/163 (46%), Positives = 112/163 (68%)
Query: 17  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPL 76
           +R+LM+GLD AGKTTIL K    ++ T  PT+GFN++T+E++     +WDVGG   +R  
Sbjct: 2   LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGLKSLRSY 61
Query: 77  WRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVS 136
           WR+YF++T GLI+VVDS DR+R+ + + EL  +L E+ L  A LL+FANKQDLP A+S +
Sbjct: 62  WRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCN 121
Query: 137 EVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
            + + L L S+R   W IQ   A +G+ L  G+DWL  ++S++
Sbjct: 122 AIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 164

>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181

Iteration: 1
 Score =  157 bits (398), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 79/165 (47%), Positives = 114/165 (69%)
Query: 15  KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIR 74
           +E+RIL++GLD AGKTT+L +L   +I    PT GFN+++V+ +     VWD+GGQ KIR
Sbjct: 15  QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIR 74
Query: 75  PLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS 134
           P WR YF+NT  LI+V+DS DR+R  E   EL  +L E++L    +L+FANKQDL  A  
Sbjct: 75  PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP 134
Query: 135 VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
            SE+ + L LH++R R W IQ+  A +G+G+ +G++W+  NV+AK
Sbjct: 135 ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 179

>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189

Iteration: 1
 Score =  157 bits (398), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 79/165 (47%), Positives = 114/165 (69%)
Query: 15  KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIR 74
           +E+RIL++GLD AGKTT+L +L   +I    PT GFN+++V+ +     VWD+GGQ KIR
Sbjct: 16  QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIR 75
Query: 75  PLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS 134
           P WR YF+NT  LI+V+DS DR+R  E   EL  +L E++L    +L+FANKQDL  A  
Sbjct: 76  PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP 135
Query: 135 VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
            SE+ + L LH++R R W IQ+  A +G+G+ +G++W+  NV+AK
Sbjct: 136 ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 180

>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186

Iteration: 1
 Score =  157 bits (396), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 72/155 (46%), Positives = 104/155 (67%)
Query: 25  DAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNT 84
           D AGKTTIL K    ++ T  PT+GFN++T+E++     +WDVGGQ  +R  WR+YF++T
Sbjct: 27  DNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFEST 86
Query: 85  HGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGL 144
            GLI+VVDS DR+R  + + EL  +L E+ L  A LL+FANKQDLP A+S + + + L L
Sbjct: 87  DGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSXNAIQEALEL 146
Query: 145 HSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
            S+R   W IQ   A +G+ L  G+DWL  ++S++
Sbjct: 147 DSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181

>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164

Iteration: 1
 Score =  153 bits (386), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 77/161 (47%), Positives = 110/161 (68%)
Query: 16  EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRP 75
           E+RIL++GLD AGKTT+L +L   +I    PT GFN+++V+ +     VWD+GGQ KIRP
Sbjct: 4   EVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRP 63
Query: 76  LWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSV 135
            WR YF+NT  LI+V+DS DR+R  E   EL  +L E++L    +L+FANKQDL  A   
Sbjct: 64  YWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPA 123
Query: 136 SEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
           SE+ + L LH++R R W IQ+  A +G+G+ +G++W+  NV
Sbjct: 124 SEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 164

>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp Length = 164

Iteration: 1
 Score =  149 bits (377), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 76/161 (47%), Positives = 109/161 (67%)
Query: 16  EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRP 75
           E+RIL++GLD AGKTT+L +L   +I    PT GFN+++V+ +     VWD+GG  KIRP
Sbjct: 4   EVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGLRKIRP 63
Query: 76  LWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSV 135
            WR YF+NT  LI+V+DS DR+R  E   EL  +L E++L    +L+FANKQDL  A   
Sbjct: 64  YWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPA 123
Query: 136 SEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
           SE+ + L LH++R R W IQ+  A +G+G+ +G++W+  NV
Sbjct: 124 SEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 164

>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6 Length = 190

Iteration: 1
 Score =  137 bits (346), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 110/166 (66%), Gaps = 4/166 (2%)
Query: 15  KEMRILMVGLDAAGKTTILYKLKL--GEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDK 72
           KE+ +L +GLD +GKTTI+ KLK    +    +PTIGF++E  +  ++SFTV+D+ GQ +
Sbjct: 20  KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGR 79
Query: 73  IRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDEL--REAVLLVFANKQDLP 130
            R LW HY++    +IFV+DS+DR R+  AK+EL  +L+  ++  R   +L FANK DL 
Sbjct: 80  YRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLR 139
Query: 131 NAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
           +A++  +V+  L L +++ + W+I A+ A  G+GL EG+DWL   +
Sbjct: 140 DAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQI 185

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score =  116 bits (291), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 96/161 (59%), Gaps = 1/161 (0%)
Query: 13  ARKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNVSFTVWDVGGQD 71
           +++EM + +VGL  +GKTT +  +  G+     IPT+GFN+  V   NV+  +WD+GGQ 
Sbjct: 19  SKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQP 78
Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131
           + R +W  Y +  + +++++D+ DRE+I  +++ELH +L + +L+   +LV  NK+DLPN
Sbjct: 79  RFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPN 138
Query: 132 AMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWL 172
           A+   ++ +K+ L +++ R     +        +   L WL
Sbjct: 139 ALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 179

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score =  116 bits (290), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 96/166 (57%), Gaps = 1/166 (0%)
Query: 8   LKMLFARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVETVEYKNVSFTVWD 66
            K LF ++EM + +VGL  +GKTT +  +  G+     IPT+GFN+  +   NV+  +WD
Sbjct: 23  FKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWD 82
Query: 67  VGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANK 126
           +GGQ + R +W  Y +    ++++VD+ D+E+I  +K+ELH +L + +L+   +LV  NK
Sbjct: 83  IGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNK 142
Query: 127 QDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWL 172
           +DLP A+   E+ +K+ L +++ R     +        +   L WL
Sbjct: 143 RDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 188

>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma Brucei With Bound Nucleotide Analogue Gppnp Length = 199

Iteration: 1
 Score =  114 bits (285), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 63/175 (36%), Positives = 99/175 (56%), Gaps = 10/175 (5%)
Query: 13  ARKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNVSFTVWDVGGQ 70
           ++ +++++M GLD +GKTTI+ ++K  +  +     T+G+NVET E   V+FTV+D+GG 
Sbjct: 14  SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGA 73
Query: 71  DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV-------LLVF 123
            K R LW  Y+ N   +IFVVDS+D  R+   K E+  ML  +++R  +        L F
Sbjct: 74  KKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFF 133
Query: 124 ANKQDLPNAMSVSEVTDKLGLHSLR-QRRWYIQAACATSGQGLYEGLDWLSSNVS 177
           ANK D   A + +E+ + L L +L     + I A+    G G++EG  WL    S
Sbjct: 134 ANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETAS 188

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score =  112 bits (281), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 94/161 (58%), Gaps = 1/161 (0%)
Query: 13  ARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVETVEYKNVSFTVWDVGGQD 71
           +++EM + +VGL  +GKTT +  +  G+     IPT+GFN+  +   NV+  +WD+GGQ 
Sbjct: 19  SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQP 78
Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131
           + R +W  Y +    ++++VD+ D+E+I  +K+ELH +L + +L+   +LV  NK+DLP 
Sbjct: 79  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 138
Query: 132 AMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWL 172
           A+   E+ +K+ L +++ R     +        +   L WL
Sbjct: 139 ALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 179

>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex Length = 190

Iteration: 1
 Score =  104 bits (260), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/169 (34%), Positives = 89/169 (52%), Gaps = 7/169 (4%)
Query: 15  KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIR 74
           K  ++L +GLD AGKTT+L+ LK   + T  PT     E +   N+ FT +D+GG  + R
Sbjct: 22  KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQAR 81
Query: 75  PLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS 134
            LW+ YF   +G++F+VD+ D ER  EA+ EL  + +  EL++   ++  NK D PNA+S
Sbjct: 82  RLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVS 141
Query: 135 VSEVTDKLGLHSLR-------QRRWYIQAACATSGQGLYEGLDWLSSNV 176
            +E+   LGL +         QR   +         G  E   WLS  +
Sbjct: 142 EAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 190

>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 167

Iteration: 1
 Score =  104 bits (260), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 87/163 (53%), Gaps = 7/163 (4%)
Query: 18  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLW 77
           ++L +GLD AGKTT+L+ LK   + T  PT     E +   N+ FT +D+GG  + R LW
Sbjct: 3   KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLW 62
Query: 78  RHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSE 137
           + YF   +G++F+VD+ D ER  EA+ EL  + +  EL++   ++  NK D PNA+S +E
Sbjct: 63  KDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAE 122
Query: 138 VTDKLGLHSLR-------QRRWYIQAACATSGQGLYEGLDWLS 173
           +   LGL +         QR   +         G  E   WLS
Sbjct: 123 LRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 165

>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp Crystal Structure At Low Mg(2+) Length = 195

Iteration: 1
 Score = 95.5 bits (236), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 92/175 (52%), Gaps = 12/175 (6%)
Query: 14  RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKI 73
           +K  +++ +GLD AGKTT+L+ LK   +   +PT+    E +    ++FT +D+GG  + 
Sbjct: 20  KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQA 79
Query: 74  RPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM 133
           R +W++Y    +G++F+VD  D ER+ E+K+EL  +++++ +    +L+  NK D P A+
Sbjct: 80  RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAI 139
Query: 134 SVSEVTDKLGLHS------------LRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
           S   + +  GL+             L  R   +        QG  EG  W++  +
Sbjct: 140 SEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 194

>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex Length = 198

Iteration: 1
 Score = 95.5 bits (236), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 92/175 (52%), Gaps = 12/175 (6%)
Query: 14  RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKI 73
           +K  +++ +GLD AGKTT+L+ LK   +   +PT+    E +    ++FT +D+GG  + 
Sbjct: 23  KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQA 82
Query: 74  RPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM 133
           R +W++Y    +G++F+VD  D ER+ E+K+EL  +++++ +    +L+  NK D P A+
Sbjct: 83  RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAI 142
Query: 134 SVSEVTDKLGLHS------------LRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
           S   + +  GL+             L  R   +        QG  EG  W++  +
Sbjct: 143 SEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197

>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight Into The Coat-controlled Gtp Hydrolysis In The Disassembly Of Cop Ii Length = 189

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 92/175 (52%), Gaps = 12/175 (6%)
Query: 14  RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKI 73
           +K  +++ +GLD AGKTT+L+ LK   +   +PT+    E +    ++FT +D+GG  + 
Sbjct: 14  KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGGIQA 73
Query: 74  RPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM 133
           R +W++Y    +G++F+VD  D ER+ E+K+EL  +++++ +    +L+  NK D P A+
Sbjct: 74  RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAI 133
Query: 134 SVSEVTDKLGLHS------------LRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
           S   + +  GL+             L  R   +        QG  EG  W++  +
Sbjct: 134 SEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 188

>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp Length = 208

Iteration: 1
 Score = 93.6 bits (231), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 93/175 (53%), Gaps = 12/175 (6%)
Query: 14  RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKI 73
           +K  +++ +GLD AGKTT+L+ LK   +   +PT+    E +    ++FT +D+GG ++ 
Sbjct: 33  KKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQA 92
Query: 74  RPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM 133
           R +W++Y    +G++F+VD  D  R+ E+K EL+ +++++ +    +L+  NK D  +A+
Sbjct: 93  RRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILGNKIDRTDAI 152
Query: 134 SVSEVTDKLGLHS------------LRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
           S  ++ +  GL+             L  R   +        QG  EG  WLS  +
Sbjct: 153 SEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYI 207

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 66/141 (46%), Gaps = 16/141 (11%)
Query: 17  MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNVSFTVWDVGG 69
            ++L++G    GK+ +L  L+  +   T   I TIG  F + T+E   K +   +WD  G
Sbjct: 10  FKLLLIGDSGVGKSCLL--LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 67
Query: 70  QDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAK---DELHRMLSEDELREAVLLVFANK 126
           Q++ R +   Y++  HG+I V D  D+E     K    E+ R  SE+  +    L+  NK
Sbjct: 68  QERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNK----LLVGNK 123
Query: 127 QDLPNAMSVSEVTDKLGLHSL 147
            DL     V   T K    SL
Sbjct: 124 SDLTTKKVVDNTTAKEFADSL 144

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 66/141 (46%), Gaps = 16/141 (11%)
Query: 17  MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNVSFTVWDVGG 69
            ++L++G    GK+ +L  L+  +   T   I TIG  F + T+E   K +   +WD  G
Sbjct: 10  FKLLLIGDSGVGKSCLL--LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 67
Query: 70  QDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAK---DELHRMLSEDELREAVLLVFANK 126
           Q++ R +   Y++  HG+I V D  D+E     K    E+ R  SE+  +    L+  NK
Sbjct: 68  QERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNK----LLVGNK 123
Query: 127 QDLPNAMSVSEVTDKLGLHSL 147
            DL     V   T K    SL
Sbjct: 124 SDLTTKKVVDNTTAKEFADSL 144

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 21/146 (14%)
Query: 17  MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNVSFTVWDVGG 69
            ++L++G    GK+ +L  L+  +   T   I TIG  F + T+E   K +   +WD  G
Sbjct: 17  FKLLLIGDSGVGKSCLL--LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 74
Query: 70  QDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAK---DELHRMLSEDELREAVLLVFANK 126
           Q++ R +   Y++  HG+I V D  D+E     K    E+ R  SE+  +    L+  NK
Sbjct: 75  QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK----LLVGNK 130
Query: 127 QDLP-----NAMSVSEVTDKLGLHSL 147
            DL      +  +  E  D LG+  L
Sbjct: 131 CDLTTKKVVDYTTAKEFADSLGIPFL 156

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 21/146 (14%)
Query: 17  MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNVSFTVWDVGG 69
            ++L++G    GK+ +L  L+  +   T   I TIG  F + T+E   K +   +WD  G
Sbjct: 7   FKLLLIGDSGVGKSCLL--LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 64
Query: 70  QDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAK---DELHRMLSEDELREAVLLVFANK 126
           Q++ R +   Y++  HG+I V D  D+E     K    E+ R  SE+  +    L+  NK
Sbjct: 65  QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK----LLVGNK 120
Query: 127 QDLP-----NAMSVSEVTDKLGLHSL 147
            DL      +  +  E  D LG+  L
Sbjct: 121 CDLTTKKVVDYTTAKEFADSLGIPFL 146

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 21/145 (14%)
Query: 18  RILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNVSFTVWDVGGQ 70
           ++L++G    GK+ +L  L+  +   T   I TIG  F + T+E   K +   +WD  GQ
Sbjct: 1   KLLLIGDSGVGKSCLL--LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 58
Query: 71  DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAK---DELHRMLSEDELREAVLLVFANKQ 127
           ++ R +   Y++  HG+I V D  D+E     K    E+ R  SE+  +    L+  NK 
Sbjct: 59  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK----LLVGNKC 114
Query: 128 DLP-----NAMSVSEVTDKLGLHSL 147
           DL      +  +  E  D LG+  L
Sbjct: 115 DLTTKKVVDYTTAKEFADSLGIPFL 139

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 21/146 (14%)
Query: 17  MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNVSFTVWDVGG 69
            ++L++G    GK+ +L  L+  +   T   I TIG  F + T+E   K +   +WD  G
Sbjct: 7   FKLLLIGDSGVGKSCLL--LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 64
Query: 70  QDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAK---DELHRMLSEDELREAVLLVFANK 126
           Q++ R +   Y++  HG+I V D  D+E     K    E+ R  SE+  +    L+  NK
Sbjct: 65  QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK----LLVGNK 120
Query: 127 QDLP-----NAMSVSEVTDKLGLHSL 147
            DL      +  +  E  D LG+  L
Sbjct: 121 CDLTTKKVVDYTTAKEFADSLGIPFL 146

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 21/146 (14%)
Query: 17  MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNVSFTVWDVGG 69
            ++L++G    GK+ +L  L+  +   T   I TIG  F + T+E   K +   +WD  G
Sbjct: 26  FKLLLIGDSGVGKSCLL--LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 83
Query: 70  QDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAK---DELHRMLSEDELREAVLLVFANK 126
           Q++ R +   Y++  HG+I V D  D+E     K    E+ R  SE+  +    L+  NK
Sbjct: 84  QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK----LLVGNK 139
Query: 127 QDLP-----NAMSVSEVTDKLGLHSL 147
            DL      +  +  E  D LG+  L
Sbjct: 140 CDLTTKKVVDYTTAKEFADSLGIPFL 165

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 21/146 (14%)
Query: 17  MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNVSFTVWDVGG 69
            ++L++G    GK+ +L  L+  +   T   I TIG  F + T+E   K +   +WD  G
Sbjct: 34  FKLLLIGDSGVGKSCLL--LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 91
Query: 70  QDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAK---DELHRMLSEDELREAVLLVFANK 126
           Q++ R +   Y++  HG+I V D  D+E     K    E+ R  SE+  +    L+  NK
Sbjct: 92  QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK----LLVGNK 147
Query: 127 QDLP-----NAMSVSEVTDKLGLHSL 147
            DL      +  +  E  D LG+  L
Sbjct: 148 CDLTTKKVVDYTTAKEFADSLGIPFL 173

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 21/146 (14%)
Query: 17  MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNVSFTVWDVGG 69
            ++L++G    GK  +L  L+  +   T   I TIG  F + T+E   K +   +WD  G
Sbjct: 17  FKLLLIGDSGVGKNCLL--LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 74
Query: 70  QDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAK---DELHRMLSEDELREAVLLVFANK 126
           Q++ R +   Y++  HG+I V D  D+E     K    E+ R  SE+  +    L+  NK
Sbjct: 75  QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK----LLVGNK 130
Query: 127 QDLP-----NAMSVSEVTDKLGLHSL 147
            DL      +  +  E  D LG+  L
Sbjct: 131 CDLTTKKVVDYTTAKEFADSLGIPFL 156

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 16/125 (12%)
Query: 17  MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNVSFTVWDVGG 69
            ++L++G    GK+ +L  L+  +   T   I TIG  F ++TVE   K V   +WD  G
Sbjct: 9   FKLLLIGNSGVGKSCLL--LRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAG 66
Query: 70  QDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAK---DELHRMLSEDELREAVLLVFANK 126
           Q++ R +   Y++ +HG+I V D  D+E     K    E+ R  +   L+    L+  NK
Sbjct: 67  QERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLK----LLVGNK 122
Query: 127 QDLPN 131
            DL +
Sbjct: 123 CDLKD 127

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score = 56.6 bits (135), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 16/125 (12%)
Query: 17  MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNVSFTVWDVGG 69
            ++L++G    GK+ +L  L+  +   T   I TIG  F ++TVE   K V   +WD  G
Sbjct: 9   FKLLLIGNSGVGKSCLL--LRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAG 66
Query: 70  QDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAK---DELHRMLSEDELREAVLLVFANK 126
           Q++ R +   Y++ +HG+I V D  D+E     K    E+ R  +   L+    L+  NK
Sbjct: 67  QERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLK----LLVGNK 122
Query: 127 QDLPN 131
            DL +
Sbjct: 123 CDLKD 127

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score = 56.2 bits (134), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 16/125 (12%)
Query: 17  MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNVSFTVWDVGG 69
            ++L++G    GK+ +L  L+  +   T   I TIG  F ++TVE   K V   +WD  G
Sbjct: 22  FKLLLIGNSGVGKSCLL--LRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAG 79
Query: 70  QDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAK---DELHRMLSEDELREAVLLVFANK 126
           Q++ R +   Y++ +HG+I V D  D+E     K    E+ R  +   L+    L+  NK
Sbjct: 80  QERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLK----LLVGNK 135
Query: 127 QDLPN 131
            DL +
Sbjct: 136 CDLKD 140

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 6/118 (5%)
Query: 17  MRILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEY--KNVSFTVWDVGGQD 71
           M+IL++G    GK+ +L +    K      T   I F ++TV+   K V   +WD  GQ+
Sbjct: 4   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDL 129
           + R +   Y++   G+I V D  D ER      +  + ++E    EA LL+  NK D+
Sbjct: 64  RFRTITTAYYRGAMGIILVYDITD-ERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 6/118 (5%)
Query: 17  MRILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEY--KNVSFTVWDVGGQD 71
           M+IL++G    GK+ +L +    K      T   I F ++TV+   K V   +WD  GQ+
Sbjct: 21  MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80
Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDL 129
           + R +   Y++   G+I V D  D ER      +  + ++E    EA LL+  NK D+
Sbjct: 81  RFRTITTAYYRGAMGIILVYDVTD-ERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 137

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 6/118 (5%)
Query: 17  MRILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEY--KNVSFTVWDVGGQD 71
           M+IL++G    GK+ +L +    K      T   I F ++TV+   K V   +WD  GQ+
Sbjct: 8   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 67
Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDL 129
           + R +   Y++   G+I V D  D ER      +  + ++E    EA LL+  NK D+
Sbjct: 68  RFRTITTAYYRGAMGIILVYDVTD-ERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 124

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 9/120 (7%)
Query: 17  MRILMVGLDAAGKTTILYKLK----LGEIVTTIPTIGFNVETVEY--KNVSFTVWDVGGQ 70
            ++L++G    GK+++L +       G  +TTI  + F + TVE   + V   +WD  GQ
Sbjct: 10  FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIG-VDFKIRTVEINGEKVKLQIWDTAGQ 68
Query: 71  DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP 130
           ++ R +   Y++ THG+I V D    E     K  LH +       +   ++  NK D P
Sbjct: 69  ERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI--NQNCDDVCRILVGNKNDDP 126

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 16/122 (13%)
Query: 19  ILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNVSFTVWDVGGQD 71
           +L++G    GK+ +L  L+  +   T   I TIG  F + T+E   K +   +WD  GQ+
Sbjct: 1   LLLIGDSGVGKSCLL--LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 58
Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAK---DELHRMLSEDELREAVLLVFANKQD 128
           + R +   Y++  HG+I V D  D+E     K    E+ R  SE+  +    L+  NK D
Sbjct: 59  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK----LLVGNKCD 114
Query: 129 LP 130
           L 
Sbjct: 115 LT 116

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 68/146 (46%), Gaps = 21/146 (14%)
Query: 17  MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNVSFTVWDVGG 69
            ++L++G    GK+ +L  L+  +   T   I TIG  F + T+E   K +   +WD  G
Sbjct: 9   FKLLLIGDSGVGKSCLL--LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 66
Query: 70  QDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAK---DELHRMLSEDELREAVLLVFANK 126
           Q++ R +   Y++  HG+I V D  D+E     K    E+ R  SE+  +    L+   K
Sbjct: 67  QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK----LLVGIK 122
Query: 127 QDLP-----NAMSVSEVTDKLGLHSL 147
            DL      +  +  E  D LG+  L
Sbjct: 123 CDLTTKKVVDYTTAKEFADSLGIPFL 148

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 21/143 (14%)
Query: 17  MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETV--EYKNVSFTVWDVGG 69
            ++L++G    GK+ +L  L+  +   T   I TIG  F + T+  E K V   +WD  G
Sbjct: 10  FKLLLIGDSGVGKSCLL--LRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAG 67
Query: 70  QDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAK---DELHRMLSEDELREAVLLVFANK 126
           Q++ R +   Y++  HG+I V D  DR+     K    E+ R   E+  +    L+  NK
Sbjct: 68  QERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNK----LLVGNK 123
Query: 127 QDLPNAMSVS-----EVTDKLGL 144
            DL +   V+     E+ D  G+
Sbjct: 124 CDLVSKRVVTSDEGRELADSHGI 146

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 63/128 (49%), Gaps = 6/128 (4%)
Query: 15  KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEYKNV--SFTVWDVGG 69
           +E+++ ++G    GK++I+++         I PTIG  F  +TV+Y+N    F +WD  G
Sbjct: 4   RELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 63
Query: 70  QDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDL 129
           Q++ R L   Y++ +   I V D    E     K+ + R L +      V+ +  NK DL
Sbjct: 64  QERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWV-RELRQHGPPSIVVAIAGNKCDL 122
Query: 130 PNAMSVSE 137
            +   V E
Sbjct: 123 TDVREVME 130

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 66/134 (49%), Gaps = 7/134 (5%)
Query: 17  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNVSFTVWDVGGQD 71
            ++L++G    GKT +L++       +T I TIG  F + T+E   K +   +WD  GQ+
Sbjct: 9   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68
Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131
           + R +   Y++   G++ V D  + +     ++ + R + E    +   ++  NK D+ +
Sbjct: 69  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWI-RNIEEHASADVEKMILGNKCDVND 127
Query: 132 AMSVS-EVTDKLGL 144
              VS E  +KL L
Sbjct: 128 KRQVSKERGEKLAL 141

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 6/116 (5%)
Query: 18  RILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEY--KNVSFTVWDVGGQDK 72
           +IL++G    GK+ +L +    K      T   I F ++TV+   K V   +WD  GQ++
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 73  IRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQD 128
            R +   Y++   G+I V D  D ER      +  + ++E    EA LL+  NK D
Sbjct: 65  FRTITTAYYRGAXGIILVYDITD-ERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD 119

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 66/134 (49%), Gaps = 7/134 (5%)
Query: 17  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNVSFTVWDVGGQD 71
            ++L++G    GKT +L++       +T I TIG  F + T+E   K +   +WD  GQ+
Sbjct: 7   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66
Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131
           + R +   Y++   G++ V D  + +     ++ + R + E    +   ++  NK D+ +
Sbjct: 67  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWI-RNIEEHASADVEKMILGNKCDVND 125
Query: 132 AMSVS-EVTDKLGL 144
              VS E  +KL L
Sbjct: 126 KRQVSKERGEKLAL 139

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 6/116 (5%)
Query: 18  RILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEY--KNVSFTVWDVGGQDK 72
           +IL++G    GK+ +L +    K      T   I F ++TV+   K V   +WD  GQ++
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 73  IRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQD 128
            R +   Y++   G+I V D  D ER      +  + ++E    EA LL+  NK D
Sbjct: 65  FRTITTAYYRGAXGIILVYDVTD-ERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD 119

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 6/130 (4%)
Query: 13  ARKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEYKNV--SFTVWDV 67
           A +E+++ ++G    GK++I+++         I PTIG  F  +TV+Y+N    F +WD 
Sbjct: 3   ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDT 62
Query: 68  GGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQ 127
            G ++ R L   Y++ +   I V D    E     K+ + R L +      V+ +  NK 
Sbjct: 63  AGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWV-RELRQHGPPSIVVAIAGNKC 121
Query: 128 DLPNAMSVSE 137
           DL +   V E
Sbjct: 122 DLTDVREVME 131

>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To Alf4 And Gdp Length = 353

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 43  TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
           T +PT G       +K++ F ++DVGGQ   R  W H F+    +IF V  +D + +   
Sbjct: 176 TRVPTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 235
Query: 103 KDELHRMLSEDELREAV----------LLVFANKQDL 129
            +E++RM    +L +++          +++F NK+DL
Sbjct: 236 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 75/176 (42%), Gaps = 28/176 (15%)
Query: 17  MRILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEYK------------NVS 61
           +++L +G    GKTT LY+    K      T   I F  + V Y              V 
Sbjct: 26  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85
Query: 62  FTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLL 121
             +WD  GQ++ R L   +F++  G + + D   ++     ++ + ++ +        ++
Sbjct: 86  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 145
Query: 122 VFANKQDLPNAMSVS-----EVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWL 172
           +  NK DLP+   V+     E+ DK G+        Y + + AT GQ + + ++ L
Sbjct: 146 LIGNKADLPDQREVNERQARELADKYGIP-------YFETSAAT-GQNVEKAVETL 193

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 13/140 (9%)
Query: 17  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKN---VSFTVWDVGGQ 70
            +IL++G  + GKT+ L++          + T+G  F V+T+ Y+N   +   +WD  GQ
Sbjct: 6   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI-YRNDKRIKLQIWDTAGQ 64
Query: 71  DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP 130
           ++ R +   Y++   G I + D  + E     +D   ++ +       VLLV  NK D+ 
Sbjct: 65  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLV-GNKCDME 123
Query: 131 NAMSVS-----EVTDKLGLH 145
           +   VS     ++ D LG  
Sbjct: 124 DERVVSSERGRQLADHLGFE 143

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 13/121 (10%)
Query: 17  MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFN----VETVEYKNVSFTVWDVGGQ 70
            ++++VG    GKT +L + K G  +  T I T+G +    V  V+   V   +WD  GQ
Sbjct: 11  FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70
Query: 71  DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAK---DELHRMLSEDELREAVLLVFANKQ 127
           ++ R +   Y+++ H L+ + D  ++      +    E+H     D      L++  NK 
Sbjct: 71  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHD----VALMLLGNKV 126
Query: 128 D 128
           D
Sbjct: 127 D 127

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 20/133 (15%)
Query: 17  MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE----TVEYKNVSFTVWDVGGQD 71
            +I+++G    GKT + Y+   G     T  TIG +       ++ + +   +WD  GQ+
Sbjct: 30  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 89
Query: 72  KIR-PLWRHYFQNTHGLIFVVDSNDRER-------IGEAKDELHRMLSEDELREAVLLVF 123
           + R  + +HY++N H ++FV D  +          I E K  L   L+ D  R    ++ 
Sbjct: 90  RFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHL---LANDIPR----ILV 142
Query: 124 ANKQDLPNAMSVS 136
            NK DL +A+ V 
Sbjct: 143 GNKCDLRSAIQVP 155

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 12/128 (9%)
Query: 16  EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETV--EYKNVSFTVWDVGGQ 70
           + +++++G  A GK++++ +   G+       TIG  F  +TV  +   V F +WD  GQ
Sbjct: 7   QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 66
Query: 71  DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD---ELHRMLSEDELREAVLLVFANKQ 127
           ++   L   Y++     I V D  + E    AK+   EL R  S +     V+ +  NK 
Sbjct: 67  ERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN----IVIALSGNKA 122
Query: 128 DLPNAMSV 135
           DL N  +V
Sbjct: 123 DLANKRAV 130

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 12/128 (9%)
Query: 16  EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETV--EYKNVSFTVWDVGGQ 70
           + +++++G  A GK++++ +   G+       TIG  F  +TV  +   V F +WD  GQ
Sbjct: 7   QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 66
Query: 71  DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD---ELHRMLSEDELREAVLLVFANKQ 127
           ++   L   Y++     I V D  + E    AK+   EL R  S +     V+ +  NK 
Sbjct: 67  ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN----IVIALSGNKA 122
Query: 128 DLPNAMSV 135
           DL N  +V
Sbjct: 123 DLANKRAV 130

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 12/128 (9%)
Query: 16  EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETV--EYKNVSFTVWDVGGQ 70
           + +++++G  A GK++++ +   G+       TIG  F  +TV  +   V F +WD  GQ
Sbjct: 6   QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 71  DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD---ELHRMLSEDELREAVLLVFANKQ 127
           ++   L   Y++     I V D  + E    AK+   EL R  S +     V+ +  NK 
Sbjct: 66  ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN----IVIALSGNKA 121
Query: 128 DLPNAMSV 135
           DL N  +V
Sbjct: 122 DLANKRAV 129

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/126 (21%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Query: 16  EMRILMVGLDAAGKTTILYKLK---LGEIVTTIPTIGFNVETVEY--KNVSFTVWDVGGQ 70
           +++++++G    GKT+++ +       E   +   + F ++TVE   K +   +WD  GQ
Sbjct: 26  KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQ 85
Query: 71  DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP 130
           ++   +   Y+++  G+I V D   +E   +   +  +M+ +    +A LL+  NK D  
Sbjct: 86  ERFNSITSAYYRSAKGIILVYDITKKETFDDLP-KWMKMIDKYASEDAELLLVGNKLDCE 144
Query: 131 NAMSVS 136
               ++
Sbjct: 145 TDREIT 150

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 12/128 (9%)
Query: 17  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET----VEYKNVSFTVWDVGGQD 71
            +++++G    GKT+++ +    +     I T+G +  T    +  K V+  +WD  GQ+
Sbjct: 7   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD---ELHRMLSEDELREAVLLVFANKQD 128
           +   L   Y+++++G I V D  D +   + K+   EL +ML      E  L +  NK D
Sbjct: 67  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG----NEICLCIVGNKID 122
Query: 129 LPNAMSVS 136
           L     VS
Sbjct: 123 LEKERHVS 130

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 20/133 (15%)
Query: 17  MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE----TVEYKNVSFTVWDVGGQD 71
            +I+++G    GKT + Y+   G     T  TIG +       ++ + +   +WD  GQ+
Sbjct: 21  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80
Query: 72  KIR-PLWRHYFQNTHGLIFVVDSNDRER-------IGEAKDELHRMLSEDELREAVLLVF 123
           + R  + +HY++N H ++FV D  +          I E K  L   L+ D  R    ++ 
Sbjct: 81  RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHL---LANDIPR----ILV 133
Query: 124 ANKQDLPNAMSVS 136
            NK DL +A+ V 
Sbjct: 134 GNKCDLRSAIQVP 146

>pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs10 And Activated Gi Alpha 3 Length = 323

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 21/132 (15%)
Query: 43  TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
           T + T G       +K++ F ++DVGGQ   R  W H F+    +IF V  +D + +   
Sbjct: 146 TRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 205
Query: 103 KDELHRMLSEDELREAV----------LLVFANKQDL--------PNAMSVSEVTDKLGL 144
            +E++RM    +L +++          +++F NK+DL        P  +   E T   G 
Sbjct: 206 DEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTICYPEYT---GS 262
Query: 145 HSLRQRRWYIQA 156
           ++  +   YIQ 
Sbjct: 263 NTYEEAAAYIQC 274

>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX Length = 330

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 21/132 (15%)
Query: 43  TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
           T + T G       +K++ F ++DVGGQ   R  W H F+    +IF V  +D + +   
Sbjct: 153 TRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 212
Query: 103 KDELHRMLSEDELREAV----------LLVFANKQDL--------PNAMSVSEVTDKLGL 144
            +E++RM    +L +++          +++F NK+DL        P  +   E T   G 
Sbjct: 213 DEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTICYPEYT---GS 269
Query: 145 HSLRQRRWYIQA 156
           ++  +   YIQ 
Sbjct: 270 NTYEEAAAYIQC 281

>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double Mutant I56cQ333C Length = 354

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 43  TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
           T + T G       +K++ F ++DVGGQ   R  W H F+    +IF V  +D + +   
Sbjct: 177 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 236
Query: 103 KDELHRMLSEDELREAV----------LLVFANKQDL 129
            +E++RM    +L +++          +++F NK+DL
Sbjct: 237 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 273

>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX Length = 330

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 21/132 (15%)
Query: 43  TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
           T + T G       +K++ F ++DVGGQ   R  W H F+    +IF V  +D + +   
Sbjct: 153 TRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 212
Query: 103 KDELHRMLSEDELREAV----------LLVFANKQDL--------PNAMSVSEVTDKLGL 144
            +E++RM    +L +++          +++F NK+DL        P  +   E T   G 
Sbjct: 213 DEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTICYPEYT---GS 269
Query: 145 HSLRQRRWYIQA 156
           ++  +   YIQ 
Sbjct: 270 NTYEEAAAYIQC 281

>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity For The Rgs14 Goloco Motif. Length = 328

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 43  TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
           T + T G       +K++ F ++DVGGQ   R  W H F+    +IF V  +D + +   
Sbjct: 151 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 210
Query: 103 KDELHRMLSEDELREAV----------LLVFANKQDL 129
            +E++RM    +L +++          +++F NK+DL
Sbjct: 211 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 247

>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco Motif Of Rgs14 Length = 325

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 43  TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
           T + T G       +K++ F ++DVGGQ   R  W H F+    +IF V  +D + +   
Sbjct: 148 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 207
Query: 103 KDELHRMLSEDELREAV----------LLVFANKQDL 129
            +E++RM    +L +++          +++F NK+DL
Sbjct: 208 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 244

>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs16 And Activated Gi Alpha 1 Length = 324

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 43  TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
           T + T G       +K++ F ++DVGGQ   R  W H F+    +IF V  +D + +   
Sbjct: 147 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 206
Query: 103 KDELHRMLSEDELREAV----------LLVFANKQDL 129
            +E++RM    +L +++          +++F NK+DL
Sbjct: 207 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 243

>pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1 Length = 353

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 43  TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
           T + T G       +K++ F ++DVGGQ   R  W H F+    +IF V  +D + +   
Sbjct: 176 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 235
Query: 103 KDELHRMLSEDELREAV----------LLVFANKQDL 129
            +E++RM    +L +++          +++F NK+DL
Sbjct: 236 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272

>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs1 And Activated Gi Alpha 1 Length = 323

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 43  TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
           T + T G       +K++ F ++DVGGQ   R  W H F+    +IF V  +D + +   
Sbjct: 146 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 205
Query: 103 KDELHRMLSEDELREAV----------LLVFANKQDL 129
            +E++RM    +L +++          +++F NK+DL
Sbjct: 206 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 242

>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp Bound Length = 353

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 43  TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
           T + T G       +K++ F ++DVGGQ   R  W H F+    +IF V  +D + +   
Sbjct: 176 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 235
Query: 103 KDELHRMLSEDELREAV----------LLVFANKQDL 129
            +E++RM    +L +++          +++F NK+DL
Sbjct: 236 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272

>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)- (GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)] Length = 325

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 45  IPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD 104
           + T G       +K+++F ++DVGGQ   R  W H F+    +IF V  +D + +    +
Sbjct: 150 VKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 209
Query: 105 ELHRMLSEDELREAV----------LLVFANKQDL 129
           E++RM    +L +++          +++F NK+DL
Sbjct: 210 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 244

>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed Helical Peptide Derived From The Goloco Motif Of Rgs14 Length = 327

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 43  TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
           T + T G       +K++ F ++DVGGQ   R  W H F+    +IF V  +D + +   
Sbjct: 150 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 209
Query: 103 KDELHRMLSEDELREAV----------LLVFANKQDL 129
            +E++RM    +L +++          +++F NK+DL
Sbjct: 210 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 246

>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The Activated State: G42r Bound To Rgs14 Goloco Length = 328

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 43  TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
           T + T G       +K++ F ++DVGGQ   R  W H F+    +IF V  +D + +   
Sbjct: 151 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 210
Query: 103 KDELHRMLSEDELREAV----------LLVFANKQDL 129
            +E++RM    +L +++          +++F NK+DL
Sbjct: 211 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 247

>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound To Alf4 And Gdp Length = 356

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 43  TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
           T + T G       +K++ F ++DVGGQ   R  W H F+    +IF V  +D + +   
Sbjct: 179 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 238
Query: 103 KDELHRMLSEDELREAV----------LLVFANKQDL 129
            +E++RM    +L +++          +++F NK+DL
Sbjct: 239 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 275

>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX Length = 330

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 43  TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
           T + T G       +K++ F ++DVGGQ   R  W H F+    +IF V  +D + +   
Sbjct: 153 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 212
Query: 103 KDELHRMLSEDELREAV----------LLVFANKQDL 129
            +E++RM    +L +++          +++F NK+DL
Sbjct: 213 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 249

>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide Provides Insight Into Guanine Nucleotide Exchange Length = 329

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 43  TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
           T + T G       +K++ F ++DVGGQ   R  W H F+    +IF V  +D + +   
Sbjct: 152 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 211
Query: 103 KDELHRMLSEDELREAV----------LLVFANKQDL 129
            +E++RM    +L +++          +++F NK+DL
Sbjct: 212 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 248

>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The Activated State Length = 325

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 43  TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
           T + T G       +K++ F ++DVGGQ   R  W H F+    +IF V  +D + +   
Sbjct: 148 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 207
Query: 103 KDELHRMLSEDELREAV----------LLVFANKQDL 129
            +E++RM    +L +++          +++F NK+DL
Sbjct: 208 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 244

>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide- State-selective Peptide: Minimal Determinants For Recognizing The Active Form Of A G Protein Alpha Subunit Length = 313

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 43  TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
           T + T G       +K++ F ++DVGGQ   R  W H F+    +IF V  +D + +   
Sbjct: 145 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 204
Query: 103 KDELHRMLSEDELREAV----------LLVFANKQDL 129
            +E++RM    +L +++          +++F NK+DL
Sbjct: 205 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 241

>pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit Length = 315

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 43  TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
           T + T G       +K++ F ++DVGGQ   R  W H F+    +IF V  +D + +   
Sbjct: 146 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 205
Query: 103 KDELHRMLSEDELREAV----------LLVFANKQDL 129
            +E++RM    +L +++          +++F NK+DL
Sbjct: 206 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 242

>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs8 And Activated Gi Alpha 3 Length = 350

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 21/132 (15%)
Query: 43  TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
           T + T G       +K++ F ++DVGGQ   R  W H F+    +IF V  +D + +   
Sbjct: 176 TRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 235
Query: 103 KDELHRMLSEDELREAV----------LLVFANKQDL--------PNAMSVSEVTDKLGL 144
            +E++RM    +L +++          +++F NK+DL        P  +   E T   G 
Sbjct: 236 DEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTICYPEYT---GS 292
Query: 145 HSLRQRRWYIQA 156
           ++  +   YIQ 
Sbjct: 293 NTYEEAAAYIQC 304

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 7/75 (9%)
Query: 9  KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETV-EYKNVSFT--V 64
          K+   +K ++I++VG  A GKT +L     GEI T  +PT+  N   V +YKN  F   +
Sbjct: 15 KIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHL 74
Query: 65 WDVGGQ---DKIRPL 76
          WD  GQ   D++RPL
Sbjct: 75 WDTAGQEEYDRLRPL 89

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 12/128 (9%)
Query: 17  MRILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEY--KNVSFTVWDVGGQD 71
            +++++G    GKT+++ +    K  +   T     F  + +    K V+  +WD  GQ+
Sbjct: 7   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD---ELHRMLSEDELREAVLLVFANKQD 128
           +   L   Y+++++G I V D  D +   + K+   EL +ML      E  L +  NK D
Sbjct: 67  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG----NEICLCIVGNKID 122
Query: 129 LPNAMSVS 136
           L     VS
Sbjct: 123 LEKERHVS 130

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 12/128 (9%)
Query: 17  MRILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEY--KNVSFTVWDVGGQD 71
            +++++G    GKT+++ +    K  +   T     F  + +    K V+  +WD  GQ+
Sbjct: 21  FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 80
Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD---ELHRMLSEDELREAVLLVFANKQD 128
           +   L   Y+++++G I V D  D +   + K+   EL +ML      E  L +  NK D
Sbjct: 81  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG----NEICLCIVGNKID 136
Query: 129 LPNAMSVS 136
           L     VS
Sbjct: 137 LEKERHVS 144

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
Query: 14 RKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETV-EYKNVSFT--VWDVGG 69
          +K ++I++VG  A GKT +L     GEI T  +PT+  N   V +YKN  F   +WD  G
Sbjct: 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAG 80
Query: 70 Q---DKIRPL 76
          Q   D++RPL
Sbjct: 81 QEEYDRLRPL 90

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 12/128 (9%)
Query: 16  EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETV--EYKNVSFTVWDVGGQ 70
           + +++++G    GK++++ +   G+       TIG  F  +TV  +   V F +WD  GQ
Sbjct: 6   QFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 71  DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD---ELHRMLSEDELREAVLLVFANKQ 127
           ++   L   Y++     I V D  + E    AK+   EL R  S +     V+ +  NK 
Sbjct: 66  ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN----IVIALSGNKA 121
Query: 128 DLPNAMSV 135
           DL N  +V
Sbjct: 122 DLANKRAV 129

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 12/128 (9%)
Query: 16  EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETV--EYKNVSFTVWDVGGQ 70
           + +++++G    GK++++ +   G+       TIG  F  +TV  +   V F +WD  GQ
Sbjct: 6   QFKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 71  DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD---ELHRMLSEDELREAVLLVFANKQ 127
           ++   L   Y++     I V D  + E    AK+   EL R  S +     V+ +  NK 
Sbjct: 66  ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN----IVIALSGNKA 121
Query: 128 DLPNAMSV 135
           DL N  +V
Sbjct: 122 DLANKRAV 129

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 12/128 (9%)
Query: 16  EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETV--EYKNVSFTVWDVGGQ 70
           + +++++G    GK++++ +   G+       TIG  F  +TV  +   V F +WD  GQ
Sbjct: 6   QFKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 71  DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD---ELHRMLSEDELREAVLLVFANKQ 127
           ++   L   Y++     I V D  + E    AK+   EL R  S +     V+ +  NK 
Sbjct: 66  ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN----IVIALSGNKA 121
Query: 128 DLPNAMSV 135
           DL N  +V
Sbjct: 122 DLANKRAV 129

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 11/155 (7%)
Query: 17  MRILMVGLDAAGKTTILYKLKLG----EIVTTIPTIGFNVET--VEYKNVSFTVWDVGGQ 70
           ++IL++G    GK+++L +        E+  TI  + F V+T  V+       +WD  GQ
Sbjct: 16  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIG-VDFKVKTISVDGNKAKLAIWDTAGQ 74
Query: 71  DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP 130
           ++ R L   Y++   G+I V D   R+   +  + L+ + +     + V  +  NK D  
Sbjct: 75  ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKIDKE 134
Query: 131 NAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGL 165
           N     EV    GL   R+       A A +  G+
Sbjct: 135 N----REVDRNEGLKFARKHSXLFIEASAKTCDGV 165

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 12/128 (9%)
Query: 16  EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETV--EYKNVSFTVWDVGGQ 70
           + +++++G    GK++++ +   G+       TIG  F  +TV  +   V F +WD  GQ
Sbjct: 6   QFKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 71  DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD---ELHRMLSEDELREAVLLVFANKQ 127
           ++   L   Y++     I V D  + E    AK+   EL R  S +     V+ +  NK 
Sbjct: 66  ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN----IVIALSGNKA 121
Query: 128 DLPNAMSV 135
           DL N  +V
Sbjct: 122 DLANKRAV 129

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 6/118 (5%)
Query: 17  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETV--EYKNVSFTVWDVGGQD 71
            ++L++G  + GKT+ L++          + T+G  F V+TV    K V   +WD  GQ+
Sbjct: 24  FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDL 129
           + R +   Y++   G I + D  + E     +D   ++ +       V+LV  NK D+
Sbjct: 84  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILV-GNKCDM 140

>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide Insights Into The Mechanism Of G Protein Activation. Length = 356

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 45  IPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD 104
           + T G       +K+++F ++DVGGQ   R  W H F+    +IF V  +D + +    +
Sbjct: 181 VKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 240
Query: 105 ELHRMLSEDELREAV----------LLVFANKQDL 129
           E++RM     L  ++          +++F NK+DL
Sbjct: 241 EMNRMHESMHLFNSICNNKWFTDTSIILFLNKKDL 275

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 12/124 (9%)
Query: 16  EMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIG--FNVETV--EYKNVSFTVWDVGGQ 70
           + +++++G  A GK++++ +   G+       TIG  F  ++V  +   V F +WD  GQ
Sbjct: 8   QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQ 67
Query: 71  DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAK---DELHRMLSEDELREAVLLVFANKQ 127
           ++   L   Y++     I V D  ++E    AK    EL R  S       V+ +  NK 
Sbjct: 68  ERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPS----IVIALAGNKA 123
Query: 128 DLPN 131
           DL N
Sbjct: 124 DLAN 127

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 63/139 (45%), Gaps = 11/139 (7%)
Query: 17  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETV--EYKNVSFTVWDVGGQD 71
            ++L++G  + GKT+ L++          + T+G  F V+TV    K +   +WD  GQ+
Sbjct: 23  FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131
           + R +   Y++   G + + D  ++E     +D   ++ +       V+LV  NK DL +
Sbjct: 83  RYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILV-GNKCDLED 141
Query: 132 AMSVS-----EVTDKLGLH 145
              V       + D LG  
Sbjct: 142 ERVVPAEDGRRLADDLGFE 160

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 12/128 (9%)
Query: 16  EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETV--EYKNVSFTVWDVGGQ 70
           + +++++G    GK++++ +   G+       TIG  F  +TV  +   V F +WD  GQ
Sbjct: 6   QFKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 71  DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD---ELHRMLSEDELREAVLLVFANKQ 127
           ++   L   Y++     I V D  + E    AK+   EL R  S +     V+ +  NK 
Sbjct: 66  ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN----IVIALSGNKA 121
Query: 128 DLPNAMSV 135
           DL N  +V
Sbjct: 122 DLANKRAV 129

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 10/120 (8%)
Query: 17  MRILMVGLDAAGKTTILY-----KLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQD 71
            + L++G    GK+ +L+     K K     T     G  +  V  K V   +WD  GQ+
Sbjct: 12  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 71
Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDEL--HRMLSEDELREAVLLVFANKQDL 129
           + R + R Y++   G + V D   RE      + L   RML+   +   V+++  NK+DL
Sbjct: 72  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNI---VIILCGNKKDL 128

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 17  MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEY--KNVSFTVWDVGGQD 71
            ++++VG  + GKT ++ + K G        TIG  F ++T+E   K V   +WD  GQ+
Sbjct: 30  FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89
Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDR 96
           + R + + Y+++ +G I   D   R
Sbjct: 90  RFRTITQSYYRSANGAILAYDITKR 114

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 10/120 (8%)
Query: 17  MRILMVGLDAAGKTTILY-----KLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQD 71
            + L++G    GK+ +L+     K K     T     G  +  V  K V   +WD  GQ+
Sbjct: 11  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70
Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDEL--HRMLSEDELREAVLLVFANKQDL 129
           + R + R Y++   G + V D   RE      + L   RML+   +   V+++  NK+DL
Sbjct: 71  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNI---VIILCGNKKDL 127

>pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1 Length = 354

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 43  TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
           T + T G       +K++ F ++DV GQ   R  W H F+    +IF V  +D + +   
Sbjct: 177 TRVKTTGIVETHFTFKDLHFKMFDVAGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 236
Query: 103 KDELHRMLSEDELREAV----------LLVFANKQDL 129
            +E++RM    +L +++          +++F NK+DL
Sbjct: 237 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 273

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 74/176 (42%), Gaps = 28/176 (15%)
Query: 17  MRILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEYKN------------VS 61
           +++L +G    GKTT LY+    K      T   I F  + V Y              V 
Sbjct: 12  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 62  FTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLL 121
             +WD  G ++ R L   +F++  G + + D   ++     ++ + ++ +        ++
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 131
Query: 122 VFANKQDLPNAMSVS-----EVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWL 172
           +  NK DLP+   V+     E+ +K G+        Y + + AT GQ + + ++ L
Sbjct: 132 LIGNKADLPDQREVNERQARELAEKYGIP-------YFETSAAT-GQNVEKSVETL 179

>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 353

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 43  TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
           T + T G       +K++ F ++DVG Q   R  W H F+    +IF V  +D + +   
Sbjct: 176 TRVKTTGIVETHFTFKDLHFKMFDVGAQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 235
Query: 103 KDELHRMLSEDELREAV----------LLVFANKQDL 129
            +E++RM    +L +++          +++F NK+DL
Sbjct: 236 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 12/128 (9%)
Query: 16  EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETV--EYKNVSFTVWDVGGQ 70
           + +++++G  A GK++++ +   G+       TIG  F  +TV  +   V F +WD  G 
Sbjct: 5   QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGL 64
Query: 71  DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD---ELHRMLSEDELREAVLLVFANKQ 127
           ++   L   Y++     I V D  + E    AK+   EL R  S +     V+ +  NK 
Sbjct: 65  ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN----IVIALSGNKA 120
Query: 128 DLPNAMSV 135
           DL N  +V
Sbjct: 121 DLANKRAV 128

>pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma In Complex With An Inhibitor Ym-254890 Length = 355

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 45  IPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF----------VVDSN 94
           +PT G      + ++V F + DVGGQ   R  W H F+N   ++F          +V+S+
Sbjct: 180 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 239
Query: 95  DRERIGEAKDELHRMLSEDELREAVLLVFANKQDL 129
           +  R+ E+K     +++    + + +++F NK+DL
Sbjct: 240 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 274

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 15/136 (11%)
Query: 17  MRILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEYKN------------VS 61
           +++L +G    GKTT LY+    K      T   I F  + V Y              V 
Sbjct: 12  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 62  FTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLL 121
             +WD  G ++ R L   +F++  G + + D   ++     ++ + ++ +        ++
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 131
Query: 122 VFANKQDLPNAMSVSE 137
           +  NK DLP+   V+E
Sbjct: 132 LIGNKADLPDQREVNE 147

>pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2 (rgs2) In Complex With Murine Galpha-q(r183c) Length = 347

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 10/96 (10%)
Query: 44  TIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF----------VVDS 93
            +PT G      + ++V F + DVGGQ   R  W H F+N   ++F          +V+S
Sbjct: 171 CVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVES 230
Query: 94  NDRERIGEAKDELHRMLSEDELREAVLLVFANKQDL 129
           ++  R+ E+K     +++    + + +++F NK+DL
Sbjct: 231 DNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 266

>pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 353

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 45  IPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF----------VVDSN 94
           +PT G      + ++V F + DVGGQ   R  W H F+N   ++F          +V+S+
Sbjct: 178 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 237
Query: 95  DRERIGEAKDELHRMLSEDELREAVLLVFANKQDL 129
           +  R+ E+K     +++    + + +++F NK+DL
Sbjct: 238 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 272

>pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its Effector Phospholipase C Beta 3 Length = 327

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 45  IPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF----------VVDSN 94
           +PT G      + ++V F + DVGGQ   R  W H F+N   ++F          +V+S+
Sbjct: 152 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 211
Query: 95  DRERIGEAKDELHRMLSEDELREAVLLVFANKQDL 129
           +  R+ E+K     +++    + + +++F NK+DL
Sbjct: 212 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 246

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 13/140 (9%)
Query: 17  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKN---VSFTVWDVGGQ 70
            +IL++G  + GKT+ L++          + T+G  F V+T+ Y+N   +   +WD  G 
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI-YRNDKRIKLQIWDTAGL 67
Query: 71  DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP 130
           ++ R +   Y++   G I   D  + E     +D   ++ +       VLLV  NK D  
Sbjct: 68  ERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLV-GNKCDXE 126
Query: 131 NAMSVS-----EVTDKLGLH 145
           +   VS     ++ D LG  
Sbjct: 127 DERVVSSERGRQLADHLGFE 146

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 10/120 (8%)
Query: 17  MRILMVGLDAAGKTTILY-----KLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQD 71
            + L++G    GK+ +L+     K K     T     G  V  V  K V   +WD  GQ+
Sbjct: 26  FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85
Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDEL--HRMLSEDELREAVLLVFANKQDL 129
           + R + R Y++   G + V D   RE        L   R L+   +   V+++  NK+DL
Sbjct: 86  RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNI---VVILCGNKKDL 142

>pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length Human Plcbeta3 Length = 353

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 45  IPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF----------VVDSN 94
           +PT G      + ++V F + DVGGQ   R  W H F+N   ++F          +V+S+
Sbjct: 178 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 237
Query: 95  DRERIGEAKDELHRMLSEDELREAVLLVFANKQDL 129
           +  R+ E+K     +++    + + +++F NK+DL
Sbjct: 238 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 272

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 12/128 (9%)
Query: 16  EMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIG--FNVETV--EYKNVSFTVWDVGGQ 70
           + +++++G  A GK++++ +   G+       TIG  F  +TV  +   V F +WD  GQ
Sbjct: 3   QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 62
Query: 71  DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD---ELHRMLSEDELREAVLLVFANKQ 127
           ++   L   Y++     I V D  + +    AK+   EL R  S +     V+ +  NK 
Sbjct: 63  ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPN----IVIALAGNKA 118
Query: 128 DLPNAMSV 135
           DL +  +V
Sbjct: 119 DLASKRAV 126

>pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1 Length = 354

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 43  TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
           T + T G       +K++ F ++DV GQ   R  W H F+    +IF V  +D + +   
Sbjct: 177 TRVKTTGIVETHFTFKDLHFKMFDVDGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 236
Query: 103 KDELHRMLSEDELREAV----------LLVFANKQDL 129
            +E++RM    +L +++          +++F NK+DL
Sbjct: 237 DEEMNRMHESMKLFDSICNNKCFTDTSIILFLNKKDL 273

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 12/128 (9%)
Query: 16  EMRILMVGLDAAGKTTILYKLKLG---EIVTTIPTIGFNVETV--EYKNVSFTVWDVGGQ 70
           + +++++G  A GK++++ +   G   E   +     F  +TV  +   V F +WD  GQ
Sbjct: 5   QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQ 64
Query: 71  DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD---ELHRMLSEDELREAVLLVFANKQ 127
           ++   L   Y++     I V D  + +    AK+   EL R  S +     V+ +  NK 
Sbjct: 65  ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPN----IVIALAGNKA 120
Query: 128 DLPNAMSV 135
           DL +  +V
Sbjct: 121 DLASKRAV 128

>pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The Mechanism Of Gtp Hydrolysis Length = 353

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 43  TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
           T + T G       +K++ F ++DVGG    R  W H F+    +IF V  +D + +   
Sbjct: 176 TRVKTTGIVETHFTFKDLHFKMFDVGGLRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 235
Query: 103 KDELHRMLSEDELREAV----------LLVFANKQDL 129
            +E++RM    +L +++          +++F NK+DL
Sbjct: 236 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 17  MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVE--TVEYKNVSFTVWDVGGQD 71
           ++++++G  A GK++I+ +    +      PTIG  F  +  T+    V F +WD  GQ+
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAK---DELHRMLSED 113
           +   L   Y++N    + V D    +   +A+    ELH   S+D
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKD 108

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 55/136 (40%), Gaps = 15/136 (11%)
Query: 17  MRILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEYKN------------VS 61
           +++L +G    GKTT LY+    K      T   I F  + V Y              V 
Sbjct: 12  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 62  FTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLL 121
             +WD  G ++ R L   +F++  G +   D   ++     ++   ++ +        ++
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV 131
Query: 122 VFANKQDLPNAMSVSE 137
           +  NK DLP+   V+E
Sbjct: 132 LIGNKADLPDQREVNE 147

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 62/133 (46%), Gaps = 20/133 (15%)
Query: 9   KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVET--VEYKNVSFT 63
           K   ++K  +I++ G  A GK++ L +L   E    I  T+G  F ++T  V+ +     
Sbjct: 21  KSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQ 80
Query: 64  VWDVGGQDKIRPLWRHYFQNTHGLIFVVDS-------NDRERIGEAKDELHRMLSEDELR 116
           +WD  GQ++ R + + YF+   G++ + D        N RE +   +D  H  +      
Sbjct: 81  LWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVP----- 135
Query: 117 EAVLLVFANKQDL 129
              +++  NK D+
Sbjct: 136 ---IMLVGNKADI 145

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 6/126 (4%)
Query: 17  MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEY--KNVSFTVWDVGGQD 71
            +I+++G    GKT ++ +   G        TIG  F ++TVE   + V   +WD  GQ+
Sbjct: 27  FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86
Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131
           + R + + Y+++ + LI   D    E       E  R + +    + + ++  NK DL  
Sbjct: 87  RFRSITQSYYRSANALILTYDITCEESF-RCLPEWLREIEQYASNKVITVLVGNKIDLAE 145
Query: 132 AMSVSE 137
              VS+
Sbjct: 146 RREVSQ 151

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 55/136 (40%), Gaps = 15/136 (11%)
Query: 17  MRILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEYKN------------VS 61
           +++L +G    GKTT LY+    K      T   I F  + V Y              V 
Sbjct: 12  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 62  FTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLL 121
             +WD  G ++ R L   +F++  G +   D   ++     ++   ++ +        ++
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV 131
Query: 122 VFANKQDLPNAMSVSE 137
           +  NK DLP+   V+E
Sbjct: 132 LIGNKADLPDQREVNE 147

>pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 350

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 10/95 (10%)
Query: 45  IPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD 104
           + T G       +K+++F  +DVGGQ   R  W H F+    +IF V  +D + +    +
Sbjct: 175 VKTTGIIETQFSFKDLNFRXFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 234
Query: 105 ELHRMLSEDELREAV----------LLVFANKQDL 129
           E +R     +L +++          +++F NK+DL
Sbjct: 235 EXNRXHESXKLFDSICNNKWFTDTSIILFLNKKDL 269

>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis For Rgs16-Mediated Deactivation Length = 333

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 10/97 (10%)
Query: 43  TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
           T + T G       +KN+ F ++DVGGQ   R  W H F++   +IF V  +  +++   
Sbjct: 157 TRVKTTGIVETHFTFKNLHFRLFDVGGQRSERKKWIHCFEDVTAIIFCVALSGYDQVLHE 216
Query: 103 KDELHRMLSEDELREAV----------LLVFANKQDL 129
            +  +RM     L +++          +++F NK+DL
Sbjct: 217 DETTNRMHESLMLFDSICNNKFFIDTSIILFLNKKDL 253

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 6/122 (4%)
Query: 13  ARKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEYKNV--SFTVWDV 67
           A +E+++ ++G    GK++I+ +         I PTIG  F  +TV   N    F +WD 
Sbjct: 20  AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDT 79
Query: 68  GGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQ 127
            GQ++   L   Y++ +   + V D   ++     K  + + L E      V+ +  NK 
Sbjct: 80  AGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWV-KELKEHGPENIVMAIAGNKC 138
Query: 128 DL 129
           DL
Sbjct: 139 DL 140

>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A Complex With Galpha(13):galpha(i1) Chimera Length = 340

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 10/94 (10%)
Query: 46  PTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDE 105
           PT G +     +K++ F ++DVGGQ   R  W   F+    +IF V  +D +++     +
Sbjct: 166 PTKGIHETHFTFKDLHFKMFDVGGQRSERKKWFECFEGVTAIIFCVALSDYDQVLMEDRQ 225
Query: 106 LHRMLSEDELREAV----------LLVFANKQDL 129
            +RM    +L +++          +++F NK+DL
Sbjct: 226 TNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 259

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 10/121 (8%)
Query: 17  MRILMVGLDAAGKTTILY-----KLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQD 71
            + L++G    GK+ +L+     K K     T     G  +  V  K V   +WD  G +
Sbjct: 9   FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLE 68
Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDEL--HRMLSEDELREAVLLVFANKQDL 129
           + R + R Y++   G + V D   RE      + L   RML+   +   V+++  NK+DL
Sbjct: 69  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNI---VIILCGNKKDL 125
Query: 130 P 130
Sbjct: 126 D 126

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 7/120 (5%)
Query: 17  MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIG--FNVETVEYKN---VSFTVWDVGGQ 70
            +I+++G    GK+ +L +    E  + +  TIG  F  ++++ KN   +   +WD  GQ
Sbjct: 8   FKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQ 67
Query: 71  DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP 130
           ++ R +   Y++   G + V D   +    E  ++  + L ++     V+L+  NK DL 
Sbjct: 68  ERYRAITSAYYRGAVGALLVYDITKKNSF-ENIEKWLKELRDNADSNIVILLVGNKSDLK 126

>pdb|1ZCB|A Chain A, Crystal Structure Of G Alpha 13 In Complex With Gdp Length = 362

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 46  PTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSN--------DRE 97
           PT G +    E KNV F + DVGGQ   R  W   F +   ++F+V S+        DR+
Sbjct: 187 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQ 246
Query: 98  --RIGEAKDELHRMLSEDELREAVLLVFANKQDL 129
             R+ E+ +    +++        +++F NK DL
Sbjct: 247 TNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 280

>pdb|3CX7|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex With Galpha-13 Bound To Gdp-Alf4 Length = 338

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 46  PTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSN--------DRE 97
           PT G +    E KNV F + DVGGQ   R  W   F +   ++F+V S+        DR+
Sbjct: 163 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQ 222
Query: 98  --RIGEAKDELHRMLSEDELREAVLLVFANKQDL 129
             R+ E+ +    +++        +++F NK DL
Sbjct: 223 TNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 256

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 60/128 (46%), Gaps = 12/128 (9%)
Query: 16  EMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIG--FNVETV--EYKNVSFTVWDVGGQ 70
           + +++++G  A GK++++ +   G+       TIG  F  +TV  +   V F +WD  G 
Sbjct: 5   QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGL 64
Query: 71  DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD---ELHRMLSEDELREAVLLVFANKQ 127
           ++   L   Y++     I V D  + +    AK+   EL R  S +     V+ +  NK 
Sbjct: 65  ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPN----IVIALAGNKA 120
Query: 128 DLPNAMSV 135
           DL +  +V
Sbjct: 121 DLASKRAV 128

>pdb|2FH5|B Chain B, The Structure Of The Mammalian Srp Receptor Length = 214

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 11/150 (7%)
Query: 13  ARKEMR--ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN---VSFTVWDV 67
           ARK  +  +L VGL  +GKT +  +L  G+   T  +I  +    +  N    S T+ D+
Sbjct: 2   ARKSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDL 61
Query: 68  GGQDKIR-PLWRHYFQNTHGLIFVVDSNDRER-IGEAKDELHRMLSED-ELREA-VLLVF 123
            G + +R  L   +  +   ++FVVDS   +R + +  + L+++L +   L+ +  LL+ 
Sbjct: 62  PGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIA 121
Query: 124 ANKQDLPNAMSVSEVTDKL--GLHSLRQRR 151
            NKQD+  A S   +  +L   L++LR  R
Sbjct: 122 CNKQDIAMAKSAKLIQQQLEKELNTLRVTR 151

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 10/120 (8%)
Query: 17  MRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNVSFTVWDVGGQD 71
            + +++G    GK+ +L++    + +   P TIG    T    V  + +   +WD  GQ+
Sbjct: 16  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75
Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDEL--HRMLSEDELREAVLLVFANKQDL 129
           + R + R Y++   G + V D   R         L   R L+       V+++  NK DL
Sbjct: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP---NTVIILIGNKADL 132

>pdb|1TND|A Chain A, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha Complexed With Gtp Gamma S Length = 324

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 10/95 (10%)
Query: 45  IPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD 104
           + T G       +K+++F ++DVGGQ   R  W H F+    +IF+   +  + +    D
Sbjct: 149 VKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTCIIFIAALSAYDMVLVEDD 208
Query: 105 ELHRMLSEDELREAV----------LLVFANKQDL 129
           E++RM     L  ++          +++F NK+D+
Sbjct: 209 EVNRMHESLHLFNSICNHRYFATTSIVLFLNKKDV 243

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	180
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	1e-124
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	1e-124
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	1e-124
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	1e-123
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	1e-122
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	1e-121
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	1e-121
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	1e-120
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	1e-119
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	1e-119
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	1e-118
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	1e-117
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	1e-115
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-113
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	1e-111
2fh5_B	214	SR-beta, signal recognition particle receptor beta	2e-85
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	5e-76
1nrj_B	218	SR-beta, signal recognition particle receptor beta	5e-74
2ged_A	193	SR-beta, signal recognition particle receptor beta	4e-73
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	5e-57
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	9e-51
3llu_A	196	RAS-related GTP-binding protein C; structural geno	1e-49
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	1e-37
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	2e-21
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	7e-12
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	1e-09
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	2e-09
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	2e-09
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	3e-09
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	3e-09
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	4e-09
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	4e-09
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	4e-09
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	4e-09
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	5e-09
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	5e-09
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	5e-09
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	7e-09
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	8e-09
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	8e-09
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	8e-09
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	8e-09
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	9e-09
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	9e-09
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	1e-08
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	1e-08
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	1e-08
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	1e-08
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	1e-08
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	2e-08
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	2e-08
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	2e-08
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	2e-08
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	2e-08
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	2e-08
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	2e-08
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	2e-08
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	2e-08
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	2e-08
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	3e-08
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	3e-08
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	3e-08
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	4e-08
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	5e-08
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	5e-08
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	6e-08
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	6e-08
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	6e-08
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	6e-08
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	7e-08
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	8e-08
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	1e-07
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	1e-07
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	1e-07
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	2e-07
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	2e-07
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	2e-07
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	2e-07
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	2e-07
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	3e-07
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	3e-07
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	3e-07
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	3e-07
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	4e-07
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	4e-07
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	4e-07
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	4e-07
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	6e-07
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	7e-07
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	7e-07
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	1e-06
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	1e-06
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	1e-06
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	1e-06
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	2e-06
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	2e-06
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	3e-06
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	3e-06
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	3e-06
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	4e-06
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	5e-06
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	5e-06
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	6e-06
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	9e-06
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	1e-05
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	3e-05
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	3e-05

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score =  347 bits (893), Expect = e-124
 Identities = 84/179 (46%), Positives = 128/179 (71%)

Query: 1   MGMVISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNV 60
           MG++ +R+  LF  +E ++++VGLD AGKTTILY+  + E+V T PTIG NVE +   N 
Sbjct: 1   MGILFTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNT 60

Query: 61  SFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVL 120
            F +WD+GGQ+ +R  W  Y+ NT  +I VVDS DRERI   ++EL++ML+ ++LR+A L
Sbjct: 61  RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGL 120

Query: 121 LVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
           L+FANKQD+   M+V+E++  L L S++  +W+IQA CA +G+GL +GL+W+ S +  +
Sbjct: 121 LIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIR 179

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score =  345 bits (888), Expect = e-124
 Identities = 54/176 (30%), Positives = 99/176 (56%), Gaps = 1/176 (0%)

Query: 5   ISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVETVEYKNVSFT 63
            S L    +++EM + +VGL  +GKTT +  +  G+     IPT+GFN+  +   NV+  
Sbjct: 11  SSGLVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIK 70

Query: 64  VWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVF 123
           +WD+GGQ + R +W  Y +    ++++VD+ D+E+I  +K+ELH +L + +L+   +LV 
Sbjct: 71  LWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVL 130

Query: 124 ANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
            NK+DLP A+   E+ +K+ L +++ R     +        +   L WL  +  ++
Sbjct: 131 GNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSR 186

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score =  345 bits (887), Expect = e-124
 Identities = 95/184 (51%), Positives = 139/184 (75%), Gaps = 4/184 (2%)

Query: 1   MGMVISRL----KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE 56
           MG  ++ L     +L A +++R+LM+GLD AGKT+ILY+L LG++VTT+PT+G N+ET++
Sbjct: 3   MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQ 62

Query: 57  YKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELR 116
           YKN+SF VWD+GGQ  +RP WR YF +T  +I+VVDS DR+R+G AK EL+ +L EDELR
Sbjct: 63  YKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELR 122

Query: 117 EAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
           +++LL+FANKQDLP+A S +E+ ++LG+ S+  R W I  + + +G GL EG+DWL   +
Sbjct: 123 KSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERL 182

Query: 177 SAKG 180
             +G
Sbjct: 183 REQG 186

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score =  342 bits (879), Expect = e-123
 Identities = 97/169 (57%), Positives = 127/169 (75%)

Query: 11  LFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQ 70
               +EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+GG 
Sbjct: 2   SHMTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGL 61

Query: 71  DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP 130
             IRP WR Y+ NT  +I+VVDS DR+RIG +K EL  ML E+ELR+A+L+VFANKQD+ 
Sbjct: 62  TSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDME 121

Query: 131 NAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
            AM+ SE+ + LGL +L+ R+W I    AT G GL E ++WL   + ++
Sbjct: 122 QAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 170

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score =  341 bits (877), Expect = e-122
 Identities = 140/179 (78%), Positives = 155/179 (86%), Gaps = 3/179 (1%)

Query: 1   MGMVISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNV 60
            G + SR+   F +K+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN+
Sbjct: 17  RGSLFSRI---FGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 73

Query: 61  SFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVL 120
            FTVWDVGGQDKIRPLWRHYFQNT GLIFVVDSNDRER+ E+ DEL +ML EDELR+AVL
Sbjct: 74  CFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVL 133

Query: 121 LVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
           LVFANKQD+PNAM VSE+TDKLGL  LR R WY+QA CAT G GLY+GLDWLS  +S +
Sbjct: 134 LVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 192

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score =  339 bits (872), Expect = e-121
 Identities = 82/179 (45%), Positives = 121/179 (67%)

Query: 1   MGMVISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNV 60
           MG++    KM    +E+R+LM+GLD AGKTTIL K    ++ T  PT+GFN++T+E++  
Sbjct: 3   MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGF 62

Query: 61  SFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVL 120
              +WDVGGQ  +R  WR+YF++T GLI+VVDS DR+R+ + + EL  +L E+ L  A L
Sbjct: 63  KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL 122

Query: 121 LVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
           L+FANKQDLP A+S + + + L L S+R   W IQ   A +G+ L  G+DWL  ++S++
Sbjct: 123 LIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score =  338 bits (868), Expect = e-121
 Identities = 81/176 (46%), Positives = 119/176 (67%), Gaps = 1/176 (0%)

Query: 4   VISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFT 63
           ++ +LK     +E+RIL++GLD AGKTT+L +L   +I    PT GFN+++V+ +     
Sbjct: 5   ILRKLK-SAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLN 63

Query: 64  VWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVF 123
           VWD+GGQ KIRP WR YF+NT  LI+V+DS DR+R  E   EL  +L E++L    +L+F
Sbjct: 64  VWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIF 123

Query: 124 ANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
           ANKQDL  A   SE+ + L LH++R R W IQ+  A +G+G+ +G++W+  NV+AK
Sbjct: 124 ANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 179

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score =  336 bits (864), Expect = e-120
 Identities = 100/181 (55%), Positives = 132/181 (72%), Gaps = 2/181 (1%)

Query: 1   MGMVISRL--KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK 58
           MG + S +  K+  + KE+RIL++GLD AGKTTILY+L++GE+VTT PTIGFNVET+ YK
Sbjct: 1   MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYK 60

Query: 59  NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREA 118
           N+   VWD+GGQ  IRP WR Y+ +T  +IFVVDS D++R+  A  ELH ML E+EL++A
Sbjct: 61  NLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDA 120

Query: 119 VLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSA 178
            LLVFANKQD P A+S SEV+ +L L  L+ R W I A+ A  G+G+ EGLDWL   +  
Sbjct: 121 ALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKE 180

Query: 179 K 179
           +
Sbjct: 181 E 181

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score =  334 bits (858), Expect = e-119
 Identities = 81/181 (44%), Positives = 120/181 (66%), Gaps = 5/181 (2%)

Query: 1   MGMVISRLKML-----FARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETV 55
           MG                 +E ++++VGLD AGKTTILY+  + E+V T PTIG NVE +
Sbjct: 1   MGSSHHHHHHSSGLVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEI 60

Query: 56  EYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDEL 115
              N  F +WD+GGQ+ +R  W  Y+ NT  +I VVDS DRERI   ++EL++ML+ ++L
Sbjct: 61  VINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDL 120

Query: 116 REAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSN 175
           R+A LL+FANKQD+   M+V+E++  L L S++  +W+IQA CA +G+GL +GL+W+ S 
Sbjct: 121 RKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 180

Query: 176 V 176
           +
Sbjct: 181 L 181

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score =  334 bits (858), Expect = e-119
 Identities = 59/175 (33%), Positives = 90/175 (51%), Gaps = 7/175 (4%)

Query: 9   KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVG 68
            +    K  ++L +GLD AGKTT+L+ LK   + T  PT     E +   N+ FT +D+G
Sbjct: 16  SLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLG 75

Query: 69  GQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQD 128
           G  + R LW+ YF   +G++F+VD+ D ER  EA+ EL  + +  EL++   ++  NK D
Sbjct: 76  GHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKID 135

Query: 129 LPNAMSVSEVTDKLGLHSLR-------QRRWYIQAACATSGQGLYEGLDWLSSNV 176
            PNA+S +E+   LGL +         QR   +         G  E   WLS  +
Sbjct: 136 APNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 190

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score =  331 bits (851), Expect = e-118
 Identities = 140/163 (85%), Positives = 152/163 (93%)

Query: 17  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPL 76
           MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN+SFTVWDVGGQDKIRPL
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 60

Query: 77  WRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVS 136
           WRHYFQNT GLIFVVDSNDRER+ EA++EL RML+EDELR+AVLLVFANKQDLPNAM+ +
Sbjct: 61  WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAA 120

Query: 137 EVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
           E+TDKLGLHSLR R WYIQA CATSG GLYEGLDWLS+ +  +
Sbjct: 121 EITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 163

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score =  328 bits (842), Expect = e-117
 Identities = 71/188 (37%), Positives = 111/188 (59%), Gaps = 9/188 (4%)

Query: 1   MGMVISRLKML-----FARKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIPTIGFNVE 53
           MG                 KE+ +L +GLD +GKTTI+ KLK         +PTIGF++E
Sbjct: 1   MGSSHHHHHHSSGLVPRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIE 60

Query: 54  TVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSED 113
             +  ++SFTV+D+ GQ + R LW HY++    +IFV+DS+DR R+  AK+EL  +L+  
Sbjct: 61  KFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHP 120

Query: 114 EL--REAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDW 171
           ++  R   +L FANK DL +A++  +V+  L L +++ + W+I A+ A  G+GL EG+DW
Sbjct: 121 DIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDW 180

Query: 172 LSSNVSAK 179
           L   +   
Sbjct: 181 LQDQIQTV 188

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score =  325 bits (835), Expect = e-115
 Identities = 51/197 (25%), Positives = 95/197 (48%), Gaps = 21/197 (10%)

Query: 1   MGMVISRL---------KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN 51
           M  +   +          +   +K  +++ +GLD AGKTT+L+ LK   +   +PT+   
Sbjct: 1   MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 60

Query: 52  VETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLS 111
            E +    ++FT +D+GG  + R +W++Y    +G++F+VD  D ER+ E+K+EL  +++
Sbjct: 61  SEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT 120

Query: 112 EDELREAVLLVFANKQDLPNAMSVSEVTDKLG------------LHSLRQRRWYIQAACA 159
           ++ +    +L+  NK D P A+S   + +  G            L  L  R   +     
Sbjct: 121 DETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 180

Query: 160 TSGQGLYEGLDWLSSNV 176
              QG  EG  W++  +
Sbjct: 181 LKRQGYGEGFRWMAQYI 197

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score =  318 bits (817), Expect = e-111
 Identities = 144/179 (80%), Positives = 159/179 (88%)

Query: 1   MGMVISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNV 60
                 + + LF +KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN+
Sbjct: 150 QNWTPPQPRGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 209

Query: 61  SFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVL 120
           SFTVWDVGGQDKIRPLWRHYFQNT GLIFVVDSNDRER+ EA++EL RML+EDELR+AVL
Sbjct: 210 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVL 269

Query: 121 LVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
           LVFANKQDLPNAM+ +E+TDKLGLHSLR R WYIQA CATSG GLYEGLDWLS+ +  +
Sbjct: 270 LVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 328

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score =  249 bits (637), Expect = 2e-85
 Identities = 38/172 (22%), Positives = 67/172 (38%), Gaps = 9/172 (5%)

Query: 14  RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN---VSFTVWDVGGQ 70
             +  +L VGL  +GKT +  +L  G+   T  +I  +    +  N    S T+ D+ G 
Sbjct: 5   SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGH 64

Query: 71  DKIRP-LWRHYFQNTHGLIFVVDSNDRER-IGEAKDELHRMLSEDEL--REAVLLVFANK 126
           + +R  L   +  +   ++FVVDS   +R + +  + L+++L +         LL+  NK
Sbjct: 65  ESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNK 124

Query: 127 QDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSA 178
           QD+  A S   +  +L       R     A               L      
Sbjct: 125 QDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSS--TAPAQLGKKGKE 174

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score =  225 bits (574), Expect = 5e-76
 Identities = 43/187 (22%), Positives = 78/187 (41%), Gaps = 26/187 (13%)

Query: 14  RKEMRILMVGLDAAGKTTILYKLK-------LGEIVT----TIPTIGFN-----VETVEY 57
               +I+  G   +GKTT L  +         GE+V+       T+ F+     +  V+ 
Sbjct: 12  EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKG 71

Query: 58  KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSE----- 112
               F ++ V GQ       +   +   G++FV DS    R+    + +  M        
Sbjct: 72  FKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAP-NRLRANAESMRNMRENLAEYG 130

Query: 113 DELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWL 172
             L +  +++  NK+DLP+A+ V  V   +        ++ +  A AT G+G++E L  +
Sbjct: 131 LTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEG----KFPVLEAVATEGKGVFETLKEV 186

Query: 173 SSNVSAK 179
           S  V A+
Sbjct: 187 SRLVLAR 193

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score =  220 bits (563), Expect = 5e-74
 Identities = 40/176 (22%), Positives = 69/176 (39%), Gaps = 11/176 (6%)

Query: 15  KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIR 74
            +  I++ G   +GKT++L  L    +  T+ +    +   +Y     T+ D  G  K+R
Sbjct: 11  YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE-PLSAADYDGSGVTLVDFPGHVKLR 69

Query: 75  PLWRHYFQN----THGLIFVVDS-NDRERIGEAKDELHRMLSEDELREAV---LLVFANK 126
                Y +       GLIF+VDS  D +++    + L  +LS  E        +L+  NK
Sbjct: 70  YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNK 129

Query: 127 QDLPNAMSVSEVTDKLG--LHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAKG 180
            +L  A   S++ D L   +  + +RR                  + L    S  G
Sbjct: 130 SELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQSTDG 185

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score =  217 bits (555), Expect = 4e-73
 Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 11/147 (7%)

Query: 15  KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIR 74
            +  I++ G   +GKT++L  L    +  T+ +    +   +Y     T+ D  G  K+R
Sbjct: 47  YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE-PLSAADYDGSGVTLVDFPGHVKLR 105

Query: 75  PLWRHYFQN----THGLIFVVDS-NDRERIGEAKDELHRMLSEDELREAV---LLVFANK 126
                Y +       GLIF+VDS  D +++    + L  +LS  E        +L+  NK
Sbjct: 106 YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNK 165

Query: 127 QDLPNAMSVSEVTDKLG--LHSLRQRR 151
            +L  A   S++ D L   +  + +RR
Sbjct: 166 SELFTARPPSKIKDALESEIQKVIERR 192

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} Length = 227

 Score =  177 bits (451), Expect = 5e-57
 Identities = 23/127 (18%), Positives = 46/127 (36%), Gaps = 5/127 (3%)

Query: 57  YKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDE-- 114
           +   +      G +  + P  +   +   G I+V ++   +R     +  H M   D   
Sbjct: 99  FSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAF 158

Query: 115 --LREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWL 172
                 +L++    Q     M    +  +L L+ L    W +Q   A +  G   G++W+
Sbjct: 159 GSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWI 217

Query: 173 SSNVSAK 179
              V +K
Sbjct: 218 LEEVESK 224

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score =  164 bits (416), Expect = 9e-51
 Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 5/118 (4%)

Query: 66  DVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDE----LREAVLL 121
             G +  + P  +   +   G I+V ++   +R     +  H M   D         +L+
Sbjct: 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLV 252

Query: 122 VFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
           +    Q     M    +  +L L+ L    W +Q   A +  G   G++W+   V +K
Sbjct: 253 LSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESK 309

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score =  158 bits (400), Expect = 1e-49
 Identities = 39/167 (23%), Positives = 66/167 (39%), Gaps = 20/167 (11%)

Query: 6   SRLKMLFARKEMRILMVGLDAAGKTTI----LYKLKLGEIVTTIPTIGFNVETVEYK-NV 60
            R  + F   + RIL++GL  +GK++I     +K+   E +    T     + +     V
Sbjct: 10  GRENLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFV 69

Query: 61  SFTVWDVGGQDKIRPLW---RHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSE--DEL 115
           +F +WD  GQ             F+ T  LI+V+D+ D     EA   LH  +S+     
Sbjct: 70  NFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYM--EALTRLHITVSKAYKVN 127

Query: 116 REAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSG 162
            +    VF +K D         ++D   + + R          A +G
Sbjct: 128 PDMNFEVFIHKVDG--------LSDDHKIETQRDIHQRANDDLADAG 166

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score =  130 bits (328), Expect = 1e-37
 Identities = 28/137 (20%), Positives = 52/137 (37%), Gaps = 13/137 (9%)

Query: 18  RILMVGLDAAGKTTI----LYKLKLGEIVTTIPTIGFNVETVEY-KNVSFTVWDVGGQDK 72
           ++L++G   +GK+++           +      TI      + +  N++  +WD GGQD 
Sbjct: 5   KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDV 64

Query: 73  -----IRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELR--EAVLLVFAN 125
                      H FQ    LI V D    E + +  +   + L +      +A + V  +
Sbjct: 65  FMENYFTKQKDHIFQMVQVLIHVFDVESTEVL-KDIEIFAKALKQLRKYSPDAKIFVLLH 123

Query: 126 KQDLPNAMSVSEVTDKL 142
           K DL       E+   +
Sbjct: 124 KMDLVQLDKREELFQIM 140

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 87.8 bits (217), Expect = 2e-21
 Identities = 21/120 (17%), Positives = 46/120 (38%), Gaps = 12/120 (10%)

Query: 19  ILMVGLDAAGKTTIL----YKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIR 74
           +L++G+   GK++I     + ++  + +    T   ++E      +   V ++ GQ    
Sbjct: 2   VLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFST-LIDLAVMELPGQLNYF 60

Query: 75  PLW---RHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSE--DELREAVLLVFANKQDL 129
                    F++   L++V+DS D      A   L  ++           + V  +K D 
Sbjct: 61  EPSYDSERLFKSVGALVYVIDSQDEYI--NAITNLAMIIEYAYKVNPSINIEVLIHKVDG 118

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score = 60.1 bits (146), Expect = 7e-12
 Identities = 23/140 (16%), Positives = 54/140 (38%), Gaps = 15/140 (10%)

Query: 16  EMRILMVGLDAAGKTTILYKLKLGE---IVTTIPTIG--FNVETVEYKN-----VSFTVW 65
            M++++VG   +GKTT+L +L   +   +     T+G       ++ ++     +   VW
Sbjct: 2   RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVW 61

Query: 66  DVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELR--EAVLLVF 123
           D  G+++      H+       + V D +  +      D +   L   + R   + +++ 
Sbjct: 62  DFAGREEFYSTHPHFMTQRALYLAVYDLSKGQ---AEVDAMKPWLFNIKARASSSPVILV 118

Query: 124 ANKQDLPNAMSVSEVTDKLG 143
               D+ +         K+ 
Sbjct: 119 GTHLDVSDEKQRKACMSKIT 138

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score = 55.8 bits (134), Expect = 1e-09
 Identities = 25/136 (18%), Positives = 52/136 (38%), Gaps = 18/136 (13%)

Query: 15  KEMRILMVGLDAAGKTTILYKLKLGE-------------IVTTIPTIGFNVETVEYKNVS 61
           +E+++ ++G   AGKT++L +L                 +    P I       E K   
Sbjct: 40  QEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECL 99

Query: 62  FTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLL 121
           F  WD GGQ+ +    + +   +   + ++DS            + +   +      V++
Sbjct: 100 FHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKHYWLRHIEKYGGKS----PVIV 155

Query: 122 VFANKQDLPNAMSVSE 137
           V  NK D   + ++ +
Sbjct: 156 V-MNKIDENPSYNIEQ 170

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 13/127 (10%)

Query: 19  ILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVE--YKNVSFTVWDVGGQDKI 73
           +++VG    GKTT + +   GE     + T+G   +          + F VWD  GQ+K 
Sbjct: 18  LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF 77

Query: 74  RPLWRHYFQNTHGLIFVVDSNDR---ERIGEAKDELHRMLSEDELREAVLLVFANKQDLP 130
             L   Y+      I + D   R   + +     +L R+  E+      +++  NK D+ 
Sbjct: 78  GGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV-CEN----IPIVLCGNKVDIK 132

Query: 131 NAMSVSE 137
           +    ++
Sbjct: 133 DRKVKAK 139

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score = 53.5 bits (129), Expect = 2e-09
 Identities = 27/126 (21%), Positives = 54/126 (42%), Gaps = 12/126 (9%)

Query: 19  ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNVSFTVWDVGGQDKI 73
           ++ +G  + GKT+++ +        T   TIG  F  +T+    + V   +WD  G ++ 
Sbjct: 19  LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERF 78

Query: 74  RPLWRHYFQNTHGLIFVVDSNDRERIGEAK---DELHRMLSEDELREAVLLVFANKQDLP 130
           R L   Y +++   + V D  +     +     D++      D     ++++  NK DL 
Sbjct: 79  RSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSD----VIIMLVGNKTDLA 134

Query: 131 NAMSVS 136
           +   VS
Sbjct: 135 DKRQVS 140

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score = 53.1 bits (128), Expect = 3e-09
 Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 12/128 (9%)

Query: 17  MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNVSFTVWDVGGQD 71
            +++++G    GK+ +L +    E  + +  TIG  F   +++   K +   +WD  GQ+
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65

Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD---ELHRMLSEDELREAVLLVFANKQD 128
           + R +   Y++   G + V D          +    EL      +     V+++  NK D
Sbjct: 66  RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSN----IVIMLVGNKSD 121

Query: 129 LPNAMSVS 136
           L +  +V 
Sbjct: 122 LRHLRAVP 129

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score = 52.5 bits (126), Expect = 3e-09
 Identities = 32/155 (20%), Positives = 65/155 (41%), Gaps = 6/155 (3%)

Query: 15  KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNVSFTVWDVGG 69
             ++++++G  A GK++I+ +    +      PTIG  F  + V      V F +WD  G
Sbjct: 2   TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAG 61

Query: 70  QDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDL 129
           Q++   L   Y++N    + V D    +   +A+  +   L E   ++ ++ +  NK D 
Sbjct: 62  QERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKE-LHEQASKDIIIALVGNKIDX 120

Query: 130 PNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQG 164
                  +V  + G     ++        A +G+ 
Sbjct: 121 LQEGGERKVAREEGEKLAEEKGLLFFETSAKTGEN 155

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score = 52.7 bits (127), Expect = 4e-09
 Identities = 29/128 (22%), Positives = 59/128 (46%), Gaps = 12/128 (9%)

Query: 18  RILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNVSFTVWDVGGQDK 72
           +IL++G  + GKT+ L++          + T+G  F V+T+    K +   +WD  G ++
Sbjct: 10  KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER 69

Query: 73  IRPLWRHYFQNTHGLIFVVDSNDRE---RIGEAKDELHRMLSEDELREAVLLVFANKQDL 129
            R +   Y++   G I + D  + E    + +   ++     ++    A +L+  NK D+
Sbjct: 70  YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDN----AQVLLVGNKCDM 125

Query: 130 PNAMSVSE 137
            +   VS 
Sbjct: 126 EDERVVSS 133

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score = 52.6 bits (127), Expect = 4e-09
 Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 12/128 (9%)

Query: 17  MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNVSFTVWDVGGQD 71
            +++++G    GKT +L +    E    +  TIG  F+  TV      V   +WD  G +
Sbjct: 26  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85

Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD---ELHRMLSEDELREAVLLVFANKQD 128
           + R +   Y++   G + V D    +     +    EL+           V+++  NK D
Sbjct: 86  RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEAT----IVVMLVGNKSD 141

Query: 129 LPNAMSVS 136
           L  A  V 
Sbjct: 142 LSQAREVP 149

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score = 52.6 bits (127), Expect = 4e-09
 Identities = 29/128 (22%), Positives = 50/128 (39%), Gaps = 12/128 (9%)

Query: 17  MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNVSFTVWDVGGQD 71
            + +++G    GK+ +L +            TIG  F    V    K +   +WD  GQ+
Sbjct: 22  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81

Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD---ELHRMLSEDELREAVLLVFANKQD 128
             R + R Y++   G + V D   RE          +  +  S +     V+++  NK D
Sbjct: 82  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSN----MVIMLIGNKSD 137

Query: 129 LPNAMSVS 136
           L +   V 
Sbjct: 138 LESRRDVK 145

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score = 52.6 bits (127), Expect = 4e-09
 Identities = 28/128 (21%), Positives = 60/128 (46%), Gaps = 12/128 (9%)

Query: 18  RILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNVSFTVWDVGGQDK 72
           ++L++G  + GKT+ L++          + T+G  F V+TV    K +   +WD  GQ++
Sbjct: 24  KLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQER 83

Query: 73  IRPLWRHYFQNTHGLIFVVDSNDRE---RIGEAKDELHRMLSEDELREAVLLVFANKQDL 129
            R +   Y++   G + + D  ++E    + +   ++     ++    A +++  NK DL
Sbjct: 84  YRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDN----AQVILVGNKCDL 139

Query: 130 PNAMSVSE 137
            +   V  
Sbjct: 140 EDERVVPA 147

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score = 52.1 bits (126), Expect = 5e-09
 Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 12/127 (9%)

Query: 19  ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNVSFTVWDVGGQDKI 73
           ++++G    GKT+++ +    +     I T+G  F  + +    K V+  +WD  GQ++ 
Sbjct: 9   VVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERF 68

Query: 74  RPLWRHYFQNTHGLIFVVDSNDRERIGEAK---DELHRMLSEDELREAVLLVFANKQDLP 130
             L   Y+++++G I V D  D +   + K    EL +ML  +      L +  NK DL 
Sbjct: 69  HALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE----ICLCIVGNKIDLE 124

Query: 131 NAMSVSE 137
               VS 
Sbjct: 125 KERHVSI 131

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score = 52.2 bits (126), Expect = 5e-09
 Identities = 29/127 (22%), Positives = 57/127 (44%), Gaps = 12/127 (9%)

Query: 19  ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNVSFTVWDVGGQDKI 73
           +L++G  + GKT+ L++          + T+G  F V+TV    K V   +WD  GQ++ 
Sbjct: 26  LLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERY 85

Query: 74  RPLWRHYFQNTHGLIFVVDSNDRE---RIGEAKDELHRMLSEDELREAVLLVFANKQDLP 130
           R +   Y++   G I + D  + E    + +   ++     ++    A +++  NK D+ 
Sbjct: 86  RTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDN----AQVILVGNKCDME 141

Query: 131 NAMSVSE 137
               V  
Sbjct: 142 EERVVPT 148

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score = 51.7 bits (125), Expect = 5e-09
 Identities = 29/129 (22%), Positives = 59/129 (45%), Gaps = 10/129 (7%)

Query: 15  KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG-FNVETVEYKNVSFT--VWDVGGQ 70
           +E +++++G    GK+ +  +   G  +    PTI  F  + +E  +      + D  G 
Sbjct: 2   REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGT 61

Query: 71  DKIRPLWRHYFQNTHGLIFVVDSNDR---ERIGEAKDELHRMLSEDELREAVLLVFANKQ 127
           ++   +   Y +N  G I V    ++   + I   +D++ R+   +++   V+LV  NK 
Sbjct: 62  EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKV--PVILV-GNKV 118

Query: 128 DLPNAMSVS 136
           DL +   VS
Sbjct: 119 DLESEREVS 127

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score = 51.8 bits (125), Expect = 7e-09
 Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 12/129 (9%)

Query: 17  MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNVSFTVWDVGGQD 71
            ++L++G    GKT +L++        T I TIG  F + T+E   K +   +WD  GQ+
Sbjct: 9   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68

Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRE---RIGEAKDELHRMLSEDELREAVLLVFANKQD 128
           + R +   Y++   G++ V D  + +    I      +    S D       ++  NK D
Sbjct: 69  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASAD----VEKMILGNKCD 124

Query: 129 LPNAMSVSE 137
           + +   VS+
Sbjct: 125 VNDKRQVSK 133

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score = 51.9 bits (125), Expect = 8e-09
 Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 12/129 (9%)

Query: 17  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNVSFTVWDVGGQD 71
            ++L++G    GK+ +L +        + I TIG  F + T+E   K +   +WD  GQ+
Sbjct: 34  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93

Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRE---RIGEAKDELHRMLSEDELREAVLLVFANKQD 128
           + R +   Y++  HG+I V D  D+E    + +   E+ R  SE+       L+  NK D
Sbjct: 94  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASEN----VNKLLVGNKCD 149

Query: 129 LPNAMSVSE 137
           L     V  
Sbjct: 150 LTTKKVVDY 158

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score = 51.4 bits (124), Expect = 8e-09
 Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 13/130 (10%)

Query: 17  MRILMVGLDAAGKTTILYKLKLGE--IVTTIPTIG--FNVETVEY--KNVSFTVWDVGGQ 70
            ++++VG    GKT +L + K G     T I T+G  F  + ++     V   +WD  GQ
Sbjct: 11  FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70

Query: 71  DKIRPLWRHYFQNTHGLIFVVDSNDR---ERIGEAKDELHRMLSEDELREAVLLVFANKQ 127
           ++ R +   Y+++ H L+ + D  ++   + I     E+H     D      L++  NK 
Sbjct: 71  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHD----VALMLLGNKV 126

Query: 128 DLPNAMSVSE 137
           D  +   V  
Sbjct: 127 DSAHERVVKR 136

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score = 51.9 bits (125), Expect = 8e-09
 Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 13/127 (10%)

Query: 19  ILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG---FNVETVEY--KNVSFTVWDVGGQDK 72
           I ++G    GKTT + ++  G        T+G     V  ++     + F VWD  GQ+K
Sbjct: 14  ICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEK 73

Query: 73  IRPLWRHYFQNTHGLIFVVDSNDRERIGEAK---DELHRMLSEDELREAVLLVFANKQDL 129
              L   Y+    G I   D   R           E   ++  +    A ++V ANK D+
Sbjct: 74  KAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNE----APIVVCANKIDI 129

Query: 130 PNAMSVS 136
            N   +S
Sbjct: 130 KNRQKIS 136

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score = 51.4 bits (124), Expect = 8e-09
 Identities = 29/130 (22%), Positives = 54/130 (41%), Gaps = 10/130 (7%)

Query: 14  RKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG-FNVETVEYKNVSFT--VWDVGG 69
            +  ++++VG    GK+ +  +      V+   PTI     +      +     + D  G
Sbjct: 7   SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAG 66

Query: 70  QDKIRPLWRHYFQNTHGLIFVVDSNDR---ERIGEAKDELHRMLSEDELREAVLLVFANK 126
           Q++   +   Y +  HG + V   NDR     +G+   ++ R+   D+    V+LV  NK
Sbjct: 67  QEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDF--PVVLV-GNK 123

Query: 127 QDLPNAMSVS 136
            DL +   V 
Sbjct: 124 ADLESQRQVP 133

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score = 51.9 bits (125), Expect = 9e-09
 Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 12/128 (9%)

Query: 17  MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNVSFTVWDVGGQD 71
            + L++G    GK+ +L++    +    +  TIG  F    V    K V   +WD  GQ+
Sbjct: 26  FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85

Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD---ELHRMLSEDELREAVLLVFANKQD 128
           + R + R Y++   G + V D   RE          +   + S +     V+++  NK+D
Sbjct: 86  RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPN----IVVILCGNKKD 141

Query: 129 LPNAMSVS 136
           L     V+
Sbjct: 142 LDPEREVT 149

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score = 51.4 bits (124), Expect = 9e-09
 Identities = 26/128 (20%), Positives = 54/128 (42%), Gaps = 12/128 (9%)

Query: 17  MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNVSFTVWDVGGQD 71
            +++++G    GK+ +L +    E  + +  TIG  F   +++   K +   +WD  G +
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89

Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD---ELHRMLSEDELREAVLLVFANKQD 128
           + R +   Y++   G + V D          +    EL      +     V+++  NK D
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSN----IVIMLVGNKSD 145

Query: 129 LPNAMSVS 136
           L +  +V 
Sbjct: 146 LRHLRAVP 153

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 12/128 (9%)

Query: 17  MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNVSFTVWDVGGQD 71
            +I+++G    GK+ +L +    E  + +  TIG  F   T+E   K +   +WD  GQ+
Sbjct: 14  FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73

Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD---ELHRMLSEDELREAVLLVFANKQD 128
           + R +   Y++   G + V D +             EL     ++      + +  NK D
Sbjct: 74  RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDN----VAVGLIGNKSD 129

Query: 129 LPNAMSVS 136
           L +  +V 
Sbjct: 130 LAHLRAVP 137

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score = 51.4 bits (124), Expect = 1e-08
 Identities = 26/128 (20%), Positives = 54/128 (42%), Gaps = 12/128 (9%)

Query: 17  MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNVSFTVWDVGGQD 71
            + +++G    GK+ +L++    + +     TIG  F    +E   + +   +WD  GQ+
Sbjct: 16  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75

Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD---ELHRMLSEDELREAVLLVFANKQD 128
           + R + R Y++   G + V D   R           +   + + +     V+++  NK D
Sbjct: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN----TVIILIGNKAD 131

Query: 129 LPNAMSVS 136
           L     V+
Sbjct: 132 LEAQRDVT 139

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score = 51.5 bits (124), Expect = 1e-08
 Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 12/128 (9%)

Query: 17  MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNVSFTVWDVGGQD 71
            +I+++G    GKT ++ +   G        TIG  F ++TVE   + V   +WD  GQ+
Sbjct: 27  FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86

Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRE---RIGEAKDELHRMLSEDELREAVLLVFANKQD 128
           + R + + Y+++ + LI   D    E    + E   E+ +  S       + ++  NK D
Sbjct: 87  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNK----VITVLVGNKID 142

Query: 129 LPNAMSVS 136
           L     VS
Sbjct: 143 LAERREVS 150

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score = 51.5 bits (124), Expect = 1e-08
 Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 12/128 (9%)

Query: 17  MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNVSFTVWDVGGQD 71
            ++L++G    GK+ +L +        + I TIG  F + T+E   K +   +WD  GQ+
Sbjct: 17  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76

Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRE---RIGEAKDELHRMLSEDELREAVLLVFANKQD 128
           + R +   Y++  HG+I V D  D+E    + +   E+ R  SE+       L+  NK D
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASEN----VNKLLVGNKCD 132

Query: 129 LPNAMSVS 136
           L     V 
Sbjct: 133 LTTKKVVD 140

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score = 51.0 bits (123), Expect = 1e-08
 Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 12/122 (9%)

Query: 18  RILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNVSFTVWDVGGQDK 72
           +IL++G    GK+ +L +    +   + I TIG  F ++TV+   K V   +WD  GQ++
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64

Query: 73  IRPLWRHYFQNTHGLIFVVDSNDR---ERIGEAKDELHRMLSEDELREAVLLVFANKQDL 129
            R +   Y++   G+I V D  D      I +    ++   +++    A LL+  NK D+
Sbjct: 65  FRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDE----AQLLLVGNKSDM 120

Query: 130 PN 131
             
Sbjct: 121 ET 122

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score = 51.1 bits (123), Expect = 2e-08
 Identities = 30/129 (23%), Positives = 60/129 (46%), Gaps = 12/129 (9%)

Query: 17  MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNVSFTVWDVGGQD 71
           ++++++G    GKT+++ +            T+G  F ++TVE   K +   +WD  GQ+
Sbjct: 27  LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86

Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRE---RIGEAKDELHRMLSEDELREAVLLVFANKQD 128
           +   +   Y+++  G+I V D   +E    + +    + +  SED    A LL+  NK D
Sbjct: 87  RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASED----AELLLVGNKLD 142

Query: 129 LPNAMSVSE 137
                 ++ 
Sbjct: 143 CETDREITR 151

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* Length = 402

 Score = 52.1 bits (124), Expect = 2e-08
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 10/99 (10%)

Query: 41  IVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIG 100
           +   + T G      +   V+F ++DVGGQ   R  W   F +   +IFVV S+    + 
Sbjct: 198 LRCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVI 257

Query: 101 EAKDELHRM----------LSEDELREAVLLVFANKQDL 129
              ++ +R+           +   LR   +++F NKQDL
Sbjct: 258 REDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score = 50.6 bits (122), Expect = 2e-08
 Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 12/126 (9%)

Query: 19  ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNVSFTVWDVGGQDKI 73
           ++++G  A GK++++ +   G+       TIG  F  +TV      V F +WD  GQ++ 
Sbjct: 9   LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY 68

Query: 74  RPLWRHYFQNTHGLIFVVDSNDRERIGEAK---DELHRMLSEDELREAVLLVFANKQDLP 130
             L   Y++     I V D  + E    AK    EL R  S +     V+ +  NK DL 
Sbjct: 69  HSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN----IVIALSGNKADLA 124

Query: 131 NAMSVS 136
           N  +V 
Sbjct: 125 NKRAVD 130

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score = 51.1 bits (123), Expect = 2e-08
 Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 12/128 (9%)

Query: 17  MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNVSFTVWDVGGQD 71
            ++L++G    GK+ +L +          I TIG  F ++TVE   K V   +WD  GQ+
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68

Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRE---RIGEAKDELHRMLSEDELREAVLLVFANKQD 128
           + R +   Y++ +HG+I V D  D+E    +     E+ R  +       + L+  NK D
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATST----VLKLLVGNKCD 124

Query: 129 LPNAMSVS 136
           L +   V 
Sbjct: 125 LKDKRVVE 132

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score = 50.2 bits (121), Expect = 2e-08
 Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 12/131 (9%)

Query: 15  KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNVSFTVWDVGG 69
           +E+++ ++G    GK++I+++           PTIG  F  +TV+Y  +   F +WD  G
Sbjct: 5   RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 64

Query: 70  QDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAK---DELHRMLSEDELREAVLLVFANK 126
            ++ R L   Y++ +   I V D    E     K    EL +          V+ +  NK
Sbjct: 65  LERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPS----IVVAIAGNK 120

Query: 127 QDLPNAMSVSE 137
            DL +   V E
Sbjct: 121 CDLTDVREVME 131

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score = 50.7 bits (122), Expect = 2e-08
 Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 12/126 (9%)

Query: 19  ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNVSFTVWDVGGQDKI 73
           + ++G    GK++I+ +           PTIG  F  +TV    +   F +WD  GQ++ 
Sbjct: 26  VCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERF 85

Query: 74  RPLWRHYFQNTHGLIFVVDSNDRERIGEAK---DELHRMLSEDELREAVLLVFANKQDLP 130
             L   Y++ +   + V D   ++     K    EL     E+     V+ +  NK DL 
Sbjct: 86  HSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPEN----IVMAIAGNKCDLS 141

Query: 131 NAMSVS 136
           +   V 
Sbjct: 142 DIREVP 147

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score = 50.6 bits (122), Expect = 2e-08
 Identities = 28/126 (22%), Positives = 55/126 (43%), Gaps = 12/126 (9%)

Query: 19  ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNVSFTVWDVGGQDKI 73
           ++ +G  + GKT+++ +        T   TIG  F  +T+    + V   +WD  GQ++ 
Sbjct: 17  LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 76

Query: 74  RPLWRHYFQNTHGLIFVVDSNDRERIGEAK---DELHRMLSEDELREAVLLVFANKQDLP 130
           R L   Y +++   + V D  +     +     D++      D     ++++  NK DL 
Sbjct: 77  RSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSD----VIIMLVGNKTDLS 132

Query: 131 NAMSVS 136
           +   VS
Sbjct: 133 DKRQVS 138

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score = 50.6 bits (122), Expect = 2e-08
 Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 10/130 (7%)

Query: 15  KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG-FNVETVEYKNVSFT--VWDVGGQ 70
              ++++VG    GK+ +  +      V    PTI    ++  E  N      V D  GQ
Sbjct: 17  PTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQ 76

Query: 71  DKIRPLWRHYFQNTHGLIFVVDSNDR---ERIGEAKDELHRMLSEDELREAVLLVFANKQ 127
           ++   +   Y +   G + V    D+   E +      + R+   +     ++LV ANK 
Sbjct: 77  EEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESF--PMILV-ANKV 133

Query: 128 DLPNAMSVSE 137
           DL +   V+ 
Sbjct: 134 DLMHLRKVTR 143

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 2e-08
 Identities = 36/167 (21%), Positives = 59/167 (35%), Gaps = 43/167 (25%)

Query: 5   ISRLKMLFA--------RKEMRILMVGLDAAGKTT-ILYKLKLGEIVTTIPTIGFNVETV 55
           +SRL+            R    +L+ G+  +GKT   L      ++   +    F +   
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD---FKI--- 184

Query: 56  EYKNVSFTVW-DVGGQDK----IRPLWRHYFQNTHGLIFVVD--SNDRERIGEAKDELHR 108
                 F  W ++   +     +  L +  +Q         D  SN + RI   + EL R
Sbjct: 185 ------F--WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236

Query: 109 MLSEDELREAVLLVFANKQD--LPNAMSVS----------EVTDKLG 143
           +L         LLV  N Q+    NA ++S          +VTD L 
Sbjct: 237 LLKSKPYENC-LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score = 50.3 bits (121), Expect = 2e-08
 Identities = 30/128 (23%), Positives = 58/128 (45%), Gaps = 12/128 (9%)

Query: 17  MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNVSFTVWDVGGQD 71
            + L++G    GK+ +L++    +    +  TIG  F  + +    K V   +WD  GQ+
Sbjct: 11  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70

Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD---ELHRMLSEDELREAVLLVFANKQD 128
           + R + R Y++   G + V D   RE      +   +   + S++     V+++  NK+D
Sbjct: 71  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQN----IVIILCGNKKD 126

Query: 129 LPNAMSVS 136
           L     V+
Sbjct: 127 LDADREVT 134

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 28/128 (21%), Positives = 55/128 (42%), Gaps = 12/128 (9%)

Query: 18  RILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNVSFTVWDVGGQDK 72
           +I++ G  A GK++ L +L   E       T+G  F ++T+    +     +WD  GQ++
Sbjct: 30  KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQER 89

Query: 73  IRPLWRHYFQNTHGLIFVVDSNDR---ERIGEAKDELHRMLSEDELREAVLLVFANKQDL 129
            R + + YF+   G++ + D         I E  D +     E       +++  NK D+
Sbjct: 90  FRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHET----VPIMLVGNKADI 145

Query: 130 PNAMSVSE 137
            +  +   
Sbjct: 146 RDTAATEG 153

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 17  MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNVSFTVWDVGGQD 71
           M+IL++G    GK+ +L +    +   + I TIG  F ++TV+   K V   +WD  GQ+
Sbjct: 21  MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80

Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRE---RIGEAKDELHRMLSEDELREAVLLVFANKQD 128
           + R +   Y++   G+I V D  D      I +    ++   +++    A LL+  NK D
Sbjct: 81  RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDE----AQLLLVGNKSD 136

Query: 129 LPN 131
           +  
Sbjct: 137 MET 139

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score = 50.3 bits (121), Expect = 3e-08
 Identities = 28/131 (21%), Positives = 48/131 (36%), Gaps = 9/131 (6%)

Query: 13  ARKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNVSFTVWDVG 68
              E+ + ++G   AGK+ +  K      ++   P +       ETV+++ V   V D  
Sbjct: 18  GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTA 77

Query: 69  GQDKIRPLWRHYFQNTHGLIFVVDSNDR---ERIGEAKDELHRMLSEDELREAVLLVFAN 125
             D  R   R Y    H  + V   + R   +      + L     E +     LL+  N
Sbjct: 78  DLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLL-GN 135

Query: 126 KQDLPNAMSVS 136
           K D+     V+
Sbjct: 136 KLDMAQYRQVT 146

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score = 49.9 bits (120), Expect = 3e-08
 Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 10/124 (8%)

Query: 15  KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNVSFTVWDVGGQ 70
            E ++++VG    GK+ +  +L     V    PTI  +      ++ +     + D  GQ
Sbjct: 20  TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ 79

Query: 71  DKIRPLWRHYFQNTHGLIFVVDSNDR---ERIGEAKDELHRMLSEDELREAVLLVFANKQ 127
           ++   +   Y +   G + V   N+      I   ++++ R+   D++   ++LV  NK 
Sbjct: 80  EEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDV--PMVLV-GNKC 136

Query: 128 DLPN 131
           DLP 
Sbjct: 137 DLPT 140

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score = 49.9 bits (120), Expect = 3e-08
 Identities = 35/129 (27%), Positives = 63/129 (48%), Gaps = 12/129 (9%)

Query: 17  MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNVSFTVWDVGGQD 71
            +I+++G    GKT + Y+   G     T  TIG  F    V+   + +   +WD  GQ+
Sbjct: 21  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80

Query: 72  KIRP-LWRHYFQNTHGLIFVVDSNDR---ERIGEAKDELHRMLSEDELREAVLLVFANKQ 127
           + R  + +HY++N H ++FV D  +      +    +E  + L  +++    +LV  NK 
Sbjct: 81  RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDI--PRILV-GNKC 137

Query: 128 DLPNAMSVS 136
           DL +A+ V 
Sbjct: 138 DLRSAIQVP 146

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score = 49.6 bits (119), Expect = 4e-08
 Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 11/122 (9%)

Query: 18  RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNVSFTVWDVGGQDK 72
           +IL++G    GK+++L +            TIG  F V+T+          +WD  GQ++
Sbjct: 17  KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 76

Query: 73  IRPLWRHYFQNTHGLIFVVDSNDRE---RIGEAKDELHRMLSEDELREAVLLVFANKQDL 129
            R L   Y++   G+I V D   R+   ++    +EL    + +++   V ++  NK D 
Sbjct: 77  FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDI---VNMLVGNKIDK 133

Query: 130 PN 131
            N
Sbjct: 134 EN 135

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score = 49.6 bits (119), Expect = 5e-08
 Identities = 33/128 (25%), Positives = 60/128 (46%), Gaps = 12/128 (9%)

Query: 17  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNVSFTVWDVGGQD 71
            ++++VG  + GKT ++ + K G        TIG  F ++T+E   K V   +WD  GQ+
Sbjct: 30  FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89

Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRE---RIGEAKDELHRMLSEDELREAVLLVFANKQD 128
           + R + + Y+++ +G I   D   R     +    +++ +    +     V L+  NK D
Sbjct: 90  RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSN----IVQLLIGNKSD 145

Query: 129 LPNAMSVS 136
           L     VS
Sbjct: 146 LSELREVS 153

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score = 49.5 bits (119), Expect = 5e-08
 Identities = 29/127 (22%), Positives = 57/127 (44%), Gaps = 12/127 (9%)

Query: 13  ARKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKNVSFT--VWDV 67
              E ++++VG D  GK+ +  +L     V    PTI   +  + V     +    + D 
Sbjct: 1   GSTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDT 59

Query: 68  GGQDKIRPLWRHYFQNTHGLIFVVDSNDR---ERIGEAKDELHRMLSEDELREAVLLVFA 124
            GQ++   +   Y +   G + V   N+    E I   ++++ R+   +++   ++LV  
Sbjct: 60  AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDV--PMVLV-G 116

Query: 125 NKQDLPN 131
           NK DLP+
Sbjct: 117 NKCDLPS 123

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score = 49.1 bits (118), Expect = 6e-08
 Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 13/129 (10%)

Query: 17  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNVSFTVWDVGGQD 71
            ++L++G    GK+++L +        + I TIG  F + TVE   + V   +WD  GQ+
Sbjct: 10  FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69

Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSE-DELREAV--LLVFANKQD 128
           + R +   Y++ THG+I V D    E        + R L E ++  + V  +LV  NK D
Sbjct: 70  RFRTITSTYYRGTHGVIVVYDVTSAESF----VNVKRWLHEINQNCDDVCRILV-GNKND 124

Query: 129 LPNAMSVSE 137
            P    V  
Sbjct: 125 DPERKVVET 133

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score = 49.4 bits (118), Expect = 6e-08
 Identities = 35/152 (23%), Positives = 58/152 (38%), Gaps = 29/152 (19%)

Query: 10  MLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNVSFTVW 65
           + F  + ++ ++VG  A GKT +L            IPT+  N      V+ K V+  +W
Sbjct: 24  LYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLW 83

Query: 66  DVGGQ---DKIRPLWRHYFQNTHGLI--FVVDSNDRERIGEAKDELHRMLS--EDELREA 118
           D  GQ   D++RPL    +  T   +  F + S               + +    E+R  
Sbjct: 84  DTAGQEDYDRLRPL---SYPQTDVFLICFSLVS---------PASFENVRAKWYPEVRHH 131

Query: 119 -----VLLVFANKQDLPNAMSVSEVTDKLGLH 145
                ++LV   K DL +     E   +  L 
Sbjct: 132 CPNTPIILV-GTKLDLRDDKDTIEKLKEKKLT 162

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* Length = 362

 Score = 50.1 bits (119), Expect = 6e-08
 Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 10/97 (10%)

Query: 43  TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
              PT G +    E KNV F + DVGGQ   R  W   F +   ++F+V S++ +++   
Sbjct: 184 ARRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLME 243

Query: 103 KDELHRMLSEDELREAV----------LLVFANKQDL 129
             + +R+     + E +          +++F NK DL
Sbjct: 244 DRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 280

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... Length = 353

 Score = 50.1 bits (119), Expect = 6e-08
 Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 10/99 (10%)

Query: 41  IVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIG 100
           + T + T G       +K++ F ++DVGGQ   R  W H F+    +IF V  +D + + 
Sbjct: 174 LRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVL 233

Query: 101 EAKDELHRMLSEDELREAV----------LLVFANKQDL 129
              +E++RM    +L +++          +++F NK+DL
Sbjct: 234 AEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score = 49.1 bits (118), Expect = 7e-08
 Identities = 30/130 (23%), Positives = 57/130 (43%), Gaps = 12/130 (9%)

Query: 15  KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNVSFTVWDVGG 69
           K  +I ++G  + GK+++  +   G+ V +  PTI   F  + +    +     + D  G
Sbjct: 5   KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAG 63

Query: 70  QDKIRPLWRHYFQNTHGLIFVVDSNDR---ERIGEAKDELHRMLSEDELREAVLLVFANK 126
           QD+     + Y  + +G I V         E I     +L  M+ + ++   ++LV  NK
Sbjct: 64  QDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQI--PIMLV-GNK 120

Query: 127 QDLPNAMSVS 136
           +DL     +S
Sbjct: 121 KDLHMERVIS 130

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score = 48.8 bits (117), Expect = 8e-08
 Identities = 20/132 (15%), Positives = 49/132 (37%), Gaps = 12/132 (9%)

Query: 13  ARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVE-TVEYKNVSFTVWDVGG 69
           +  E+R+ ++G   +GK++++++   G       T    +  E  V+ +     + +  G
Sbjct: 4   SIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAG 63

Query: 70  QDKIRPLWRHYFQNTHGLIFVVDSNDR---ERIGEAKDELHRMLSEDELREAVLLV-FAN 125
               +     +      +IFV    D    + +     +L  +  E     A+ LV   +
Sbjct: 64  APDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQD 118

Query: 126 KQDLPNAMSVSE 137
           +    +   V +
Sbjct: 119 RISASSPRVVGD 130

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score = 48.3 bits (116), Expect = 1e-07
 Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 12/126 (9%)

Query: 19  ILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNVSFTVWDVGGQDKI 73
           ++++G   AGK++++ +    + +     TIG  F  +T+      V F +WD  GQ++ 
Sbjct: 15  LVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY 74

Query: 74  RPLWRHYFQNTHGLIFVVDSNDRERIGEAK---DELHRMLSEDELREAVLLVFANKQDLP 130
             L   Y++     I V D  ++     AK    EL    + +     V+ +  NK DL 
Sbjct: 75  HSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPN----MVMALAGNKSDLL 130

Query: 131 NAMSVS 136
           +A  V+
Sbjct: 131 DARKVT 136

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score = 48.3 bits (116), Expect = 1e-07
 Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 10/128 (7%)

Query: 18  RILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY---KNVSFTVWDVGGQD 71
           +I+++G  A+GKT++               TIG  F +  +      NV+  +WD+GGQ 
Sbjct: 8   KIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQT 67

Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDR---ERIGEAKDELHRMLSEDELREAVLLVFANKQD 128
               +   Y     G++ V D  +    E + +    + ++  E E +  V LV  NK D
Sbjct: 68  IGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALV-GNKID 126

Query: 129 LPNAMSVS 136
           L +  ++ 
Sbjct: 127 LEHMRTIK 134

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score = 48.4 bits (116), Expect = 1e-07
 Identities = 29/130 (22%), Positives = 56/130 (43%), Gaps = 13/130 (10%)

Query: 15  KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNVSFTVWDVGGQ 70
            E+++ + G    GK+ ++ +      +    PT+        T++ + VS  + D  GQ
Sbjct: 27  AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQ 86

Query: 71  DKIRPLWR-HYFQNTHGLIFVVDSNDR---ERIGEAKDELHRMLSEDELREAVLLVFANK 126
           +    + R  + +   G + V D  DR   E +   K+ L  +     +   ++LV  NK
Sbjct: 87  E--DTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNV--TLILV-GNK 141

Query: 127 QDLPNAMSVS 136
            DL ++  VS
Sbjct: 142 ADLDHSRQVS 151

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 12/91 (13%)

Query: 14  RKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN-VETVEY--KNVSFTVWDVGG 69
           +K ++I++VG  A GKT +L     GEI T  +PT+  N    ++Y  +     +WD  G
Sbjct: 21  KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAG 80

Query: 70  Q---DKIRPLWRHYFQNTHGLI--FVVDSND 95
           Q   D++RPL    + ++  ++  F V++  
Sbjct: 81  QEEYDRLRPL---SYADSDVVLLCFAVNNRT 108

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score = 48.0 bits (115), Expect = 2e-07
 Identities = 25/123 (20%), Positives = 51/123 (41%), Gaps = 9/123 (7%)

Query: 19  ILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY---KNVSFTVWDVGGQDK 72
           ++++G    GKT+++++    +       TIG  F  + V     K  +  VWD  GQ++
Sbjct: 11  VIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER 70

Query: 73  IRPLWRHYFQNTHGLIFVVDSNDR---ERIGEAKDELHRMLSEDELREAVLLVFANKQDL 129
            + L   +++     + V D  +    E I   +DE     + +       ++  NK D 
Sbjct: 71  FQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDA 130

Query: 130 PNA 132
             +
Sbjct: 131 EES 133

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score = 47.5 bits (114), Expect = 2e-07
 Identities = 25/130 (19%), Positives = 55/130 (42%), Gaps = 12/130 (9%)

Query: 15  KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKNVSFT--VWDVGG 69
           +E +++++G    GK+ +  +   G  V    PTI   +  + VE         + D  G
Sbjct: 2   REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAG 60

Query: 70  QDKIRPLWRHYFQNTHGLIFVVDSNDR---ERIGEAKDELHRMLSEDELREAVLLVFANK 126
            ++   +   Y +N  G   V     +     + + ++++ R+   +++   ++LV  NK
Sbjct: 61  TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDV--PMILV-GNK 117

Query: 127 QDLPNAMSVS 136
            DL +   V 
Sbjct: 118 CDLEDERVVG 127

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score = 47.5 bits (114), Expect = 2e-07
 Identities = 22/129 (17%), Positives = 47/129 (36%), Gaps = 9/129 (6%)

Query: 15  KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG-FNVETVEYKNVSFT--VWDVGGQ 70
            + R+ + G    GK++++ +   G    + IPT+     + +       T  + D  G 
Sbjct: 2   NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGS 61

Query: 71  DKIRPLWRHYFQNTHGLIFVVDSNDR---ERIGEAKDELHRMLSEDELREAVLLVFANKQ 127
            +   + R      H  I V     R   E +    +++  +  + E     +++  NK 
Sbjct: 62  HQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVE--SIPIMLVGNKC 119

Query: 128 DLPNAMSVS 136
           D   +  V 
Sbjct: 120 DESPSREVQ 128

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score = 47.5 bits (114), Expect = 2e-07
 Identities = 22/121 (18%), Positives = 49/121 (40%), Gaps = 8/121 (6%)

Query: 19  ILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNVSFTVWDVGGQDKI 73
           ++++G    GK++++ +    +       TIG  F  + +E     V+  +WD  GQ++ 
Sbjct: 10  VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF 69

Query: 74  RPLWRHYFQNTHGLIFVVDSNDR---ERIGEAKDELHRMLSEDELREAVLLVFANKQDLP 130
           R L   +++ +   +     +D    + +   K E        E      ++  NK D+ 
Sbjct: 70  RSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS 129

Query: 131 N 131
            
Sbjct: 130 E 130

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score = 47.6 bits (114), Expect = 3e-07
 Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 11/124 (8%)

Query: 15  KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKNVSFT--VWDVGG 69
            + R+++ G    GK++++ +   G    T IPTI   +  + +       T  + D  G
Sbjct: 7   NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTG 65

Query: 70  QDKIRPLWRHYFQNTHGLIFVVDSNDR---ERIGEAKDELHRMLSEDELREAVLLVFANK 126
             +   + R      H  I V     +   E +G     + ++    E  +  +++  NK
Sbjct: 66  SHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVE--DIPVMLVGNK 123

Query: 127 QDLP 130
            D  
Sbjct: 124 CDET 127

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score = 47.6 bits (114), Expect = 3e-07
 Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 12/130 (9%)

Query: 15  KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNVSFTVWDVGG 69
           +  +++++G    GKT++ ++   GE      PT+   ++ + V          + D  G
Sbjct: 23  RYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYS-KIVTLGKDEFHLHLVDTAG 81

Query: 70  QDKIRPLWRHYFQNTHGLIFVVDSNDR---ERIGEAKDELHRMLSEDELREAVLLVFANK 126
           QD+   L   +    HG + V         + I     +LH    +  +   V+LV  NK
Sbjct: 82  QDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRV--PVVLV-GNK 138

Query: 127 QDLPNAMSVS 136
            DL     V 
Sbjct: 139 ADLSPEREVQ 148

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score = 47.2 bits (113), Expect = 3e-07
 Identities = 28/128 (21%), Positives = 47/128 (36%), Gaps = 12/128 (9%)

Query: 18  RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNVSFTVWDVGGQDK 72
           ++++VG    GK+T+       +  +   P          +    + V+  V+D+  Q  
Sbjct: 25  KVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGD 84

Query: 73  IRPLWR-HYFQNTHGLIFVVDSNDR---ERIGEAKDELHRMLSEDELREAVLLVFANKQD 128
                R H  Q     + V    DR    ++ E    L       +L   V+LV  NK D
Sbjct: 85  AGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDL--PVILV-GNKSD 141

Query: 129 LPNAMSVS 136
           L  +  VS
Sbjct: 142 LARSREVS 149

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 26/127 (20%), Positives = 53/127 (41%), Gaps = 8/127 (6%)

Query: 19  ILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNVSFTVWDVGGQDKI 73
           ++++G    GKT+++ +    +       TIG  F  + V    + V+  +WD  GQ++ 
Sbjct: 11  VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERF 70

Query: 74  RPLWRHYFQNTHGLIFVVDSNDR---ERIGEAKDELHRMLSEDELREAVLLVFANKQDLP 130
           + L   +++     + V D       + +   +DE     S  +      +V  NK DL 
Sbjct: 71  QSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE 130

Query: 131 NAMSVSE 137
           N    ++
Sbjct: 131 NRQVATK 137

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score = 47.0 bits (112), Expect = 4e-07
 Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 12/92 (13%)

Query: 13 ARKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNVSFTVWDVG 68
          A + ++ + VG  A GKT +L         T  +PT+  N      V    V+  +WD  
Sbjct: 5  ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTA 64

Query: 69 GQ---DKIRPLWRHYFQNTHGLI--FVVDSND 95
          GQ   +++RPL    ++     I  F + S  
Sbjct: 65 GQEDYNRLRPL---SYRGADVFILAFSLISKA 93

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score = 47.2 bits (113), Expect = 4e-07
 Identities = 28/135 (20%), Positives = 53/135 (39%), Gaps = 20/135 (14%)

Query: 14  RKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEY--------KNVSFTV 64
               +++MVG    GK+ +  +    E V    PT         Y        + V   +
Sbjct: 16  LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-----DSYRKKVVLDGEEVQIDI 70

Query: 65  WDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDR---ERIGEAKDELHRMLSEDELREAVLL 121
            D  GQ+    +  +YF++  G + V    +        + ++++ R+  ++ +    LL
Sbjct: 71  LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENV--PFLL 128

Query: 122 VFANKQDLPNAMSVS 136
           V  NK DL +   VS
Sbjct: 129 V-GNKSDLEDKRQVS 142

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score = 46.7 bits (112), Expect = 4e-07
 Identities = 28/125 (22%), Positives = 55/125 (44%), Gaps = 12/125 (9%)

Query: 15  KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKNVSFT--VWDVGG 69
            E ++++VG    GK+ +  +L     V    PTI   +  + V     +    + D  G
Sbjct: 2   TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCLLDILDTAG 60

Query: 70  QDKIRPLWRHYFQNTHGLIFVVDSNDR---ERIGEAKDELHRMLSEDELREAVLLVFANK 126
           Q++   +   Y +   G + V   N+    E I + ++++ R+   D++   ++LV  NK
Sbjct: 61  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDV--PMVLV-GNK 117

Query: 127 QDLPN 131
            DL  
Sbjct: 118 SDLAA 122

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score = 46.7 bits (112), Expect = 4e-07
 Identities = 28/135 (20%), Positives = 53/135 (39%), Gaps = 20/135 (14%)

Query: 15  KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEY--------KNVSFTVW 65
              +++MVG    GK+ +  +    E V    PT         Y        + V   + 
Sbjct: 3   ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-----DSYRKKVVLDGEEVQIDIL 57

Query: 66  DVGGQDKIRPLWRHYFQNTHGLIFVVDSNDR---ERIGEAKDELHRMLSEDELREAVLLV 122
           D  GQ+    +  +YF++  G + V    +        + ++++ R+  ++ +    LLV
Sbjct: 58  DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENV--PFLLV 115

Query: 123 FANKQDLPNAMSVSE 137
             NK DL +   VS 
Sbjct: 116 -GNKSDLEDKRQVSV 129

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score = 45.9 bits (110), Expect = 6e-07
 Identities = 25/127 (19%), Positives = 55/127 (43%), Gaps = 13/127 (10%)

Query: 19  ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNVSFTVWDVGGQDKI 73
           +++VG  A GK++++ +   G        TIG  F    ++   ++V   +WD  GQ++ 
Sbjct: 8   MVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEF 67

Query: 74  RPLWRHYFQNTHGLIFVVDSNDR---ERIGEAKDELHRMLSEDELREAVLLVFANKQDLP 130
             + + Y++     + V  + DR   E I   ++++   +      +    +  NK DL 
Sbjct: 68  DAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-----DIPTALVQNKIDLL 122

Query: 131 NAMSVSE 137
           +   +  
Sbjct: 123 DDSCIKN 129

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score = 46.2 bits (110), Expect = 7e-07
 Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 12/87 (13%)

Query: 18 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNVSFTVWDVGGQ--- 70
          +I++VG    GKT +L+           +PT+  N      ++ + +  ++WD  G    
Sbjct: 9  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 68

Query: 71 DKIRPLWRHYFQNTHGLI--FVVDSND 95
          D +RPL    + ++  ++  F +   +
Sbjct: 69 DNVRPL---SYPDSDAVLICFDISRPE 92

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* Length = 327

 Score = 47.0 bits (111), Expect = 7e-07
 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 10/97 (10%)

Query: 43  TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
             +PT G      + ++V F + DVGGQ   R  W H F+N   ++F+V  ++ +++   
Sbjct: 150 VRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVE 209

Query: 103 KDELHRMLSEDELREAV----------LLVFANKQDL 129
            D  +RM     L   +          +++F NK+DL
Sbjct: 210 SDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 246

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 27/130 (20%), Positives = 53/130 (40%), Gaps = 12/130 (9%)

Query: 15  KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKNVSFT--VWDVGG 69
              +++MVG    GK+ +  +    E V    PT    +  + V          + D  G
Sbjct: 13  ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAG 71

Query: 70  QDKIRPLWRHYFQNTHGLIFVVDSNDR---ERIGEAKDELHRMLSEDELREAVLLVFANK 126
           Q+    +  +YF++  G + V    +        + ++++ R+  ++ +    LLV  NK
Sbjct: 72  QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENV--PFLLV-GNK 128

Query: 127 QDLPNAMSVS 136
            DL +   VS
Sbjct: 129 SDLEDKRQVS 138

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score = 45.2 bits (108), Expect = 1e-06
 Identities = 26/128 (20%), Positives = 45/128 (35%), Gaps = 12/128 (9%)

Query: 18  RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNVSFTVWDVGGQDK 72
           ++++VG    GK+T+       +                 +    + V+  V+D+  Q  
Sbjct: 4   KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 63

Query: 73  IRPLWR-HYFQNTHGLIFVVDSNDR---ERIGEAKDELHRMLSEDELREAVLLVFANKQD 128
                + H  Q     + V    DR    ++ E    L       +L   V+LV  NK D
Sbjct: 64  AGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDL--PVILV-GNKSD 120

Query: 129 LPNAMSVS 136
           L  +  VS
Sbjct: 121 LARSREVS 128

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score = 45.2 bits (108), Expect = 1e-06
 Identities = 30/130 (23%), Positives = 49/130 (37%), Gaps = 19/130 (14%)

Query: 18  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY--------KNVSFTVWDVGG 69
           ++L++G    GK+ +       E        G       Y        +  S  V+D+  
Sbjct: 4   KVLLLGAPGVGKSALARIFGGVEDGPEAEAAG-----HTYDRSIVVDGEEASLMVYDIWE 58

Query: 70  QDKIRPLWRHYFQNTHGLIFVVDSNDR---ERIGEAKDELHRMLSEDELREAVLLVFANK 126
           QD  R L  H        + V    D+   E+  E + +L R    D++   ++LV  NK
Sbjct: 59  QDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDV--PIILV-GNK 115

Query: 127 QDLPNAMSVS 136
            DL  +  VS
Sbjct: 116 SDLVRSREVS 125

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 34/135 (25%), Positives = 53/135 (39%), Gaps = 29/135 (21%)

Query: 13  ARKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN-VETVEY--KNVSFTVWDVG 68
             K ++ + VG  A GKT +L      +  T  IPT+  N    V    + V+  +WD  
Sbjct: 6   VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTA 65

Query: 69  GQ---DKIRPLWRHYFQNTHGLI--FVVDSNDRERIGEAKDELHRMLS--EDELRE---- 117
           GQ    ++RPL    ++     +  F + S         K     +L     ELR     
Sbjct: 66  GQEDYSRLRPL---SYRGADIFVLAFSLIS---------KASYENVLKKWMPELRRFAPN 113

Query: 118 -AVLLVFANKQDLPN 131
             ++LV   K DL +
Sbjct: 114 VPIVLV-GTKLDLRD 127

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 12/87 (13%)

Query: 18  RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNVSFTVWDVGGQ--- 70
           +I++VG    GKT +L+           +PT+  N      ++ + +  ++WD  G    
Sbjct: 30  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 89

Query: 71  DKIRPLWRHYFQNTHGLI--FVVDSND 95
           D +RPL    + ++  ++  F +   +
Sbjct: 90  DNVRPL---SYPDSDAVLICFDISRPE 113

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score = 44.9 bits (107), Expect = 2e-06
 Identities = 30/138 (21%), Positives = 56/138 (40%), Gaps = 21/138 (15%)

Query: 18  RILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY------------KNVSF 62
           + L +G    GKT++LY+   G+     I T+G  F  + V Y            + +  
Sbjct: 13  KFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHL 72

Query: 63  TVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDR---ERIGEAKDELHRMLSEDELREAV 119
            +WD  G ++ R L   +F++  G + + D  +      +     +L      +     +
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENP--DI 130

Query: 120 LLVFANKQDLPNAMSVSE 137
           +L   NK DL +  +V E
Sbjct: 131 VLC-GNKSDLEDQRAVKE 147

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score = 44.8 bits (106), Expect = 3e-06
 Identities = 29/145 (20%), Positives = 57/145 (39%), Gaps = 21/145 (14%)

Query: 13  ARKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN-VETVEY--KNVSFTVWDVG 68
             + +++++VG    GKT++L     G    +  PT+    +  ++   K V   +WD  
Sbjct: 31  GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTA 90

Query: 69  GQ---DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREA-----VL 120
           GQ   D++RPL   ++ +   L+   D           +  +      E+        ++
Sbjct: 91  GQDDYDRLRPL---FYPDASVLLLCFDVTSPNSFDNIFNRWYP-----EVNHFCKKVPII 142

Query: 121 LVFANKQDLPNAMSVSEVTDKLGLH 145
           +V   K DL    S+     + GL 
Sbjct: 143 VV-GCKTDLRKDKSLVNKLRRNGLE 166

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score = 44.9 bits (106), Expect = 3e-06
 Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 12/86 (13%)

Query: 19  ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNVSFTVWDVGGQ---D 71
           +++VG    GKT +L  L       T +PT+  N       E + V  ++WD  G    D
Sbjct: 30  LVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYD 89

Query: 72  KIRPLWRHYFQNTHGLI--FVVDSND 95
            +RPL    + ++  ++  F +   +
Sbjct: 90  NVRPL---CYSDSDAVLLCFDISRPE 112

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 36/147 (24%), Positives = 57/147 (38%), Gaps = 29/147 (19%)

Query: 15  KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNVSFTVWDVGGQ 70
           + ++ ++VG  A GKT+++         T  IPT   N   V +V+ + V   + D  GQ
Sbjct: 19  RGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQ 78

Query: 71  ---DKIRPLWRHYFQNTHGLI--FVVDSNDRERIGEAKDELHRMLS--EDELREA----- 118
              DK+RPL    + NT   +  F V S               +      E+R       
Sbjct: 79  DEFDKLRPL---CYTNTDIFLLCFSVVS---------PSSFQNVSEKWVPEIRCHCPKAP 126

Query: 119 VLLVFANKQDLPNAMSVSEVTDKLGLH 145
           ++LV   + DL   + V    DK    
Sbjct: 127 IILV-GTQSDLREDVKVLIELDKCKEK 152

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score = 44.4 bits (105), Expect = 4e-06
 Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 12/86 (13%)

Query: 19  ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNVSFTVWDVGGQ---D 71
           +++VG  A GKT +L      E     +PT+  N      V+ K V   +WD  GQ   D
Sbjct: 28  LVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYD 87

Query: 72  KIRPLWRHYFQNTHGLI--FVVDSND 95
           ++RPL    + +T  ++  F VDS D
Sbjct: 88  RLRPL---SYPDTDVILMCFSVDSPD 110

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score = 44.0 bits (104), Expect = 5e-06
 Identities = 30/139 (21%), Positives = 56/139 (40%), Gaps = 21/139 (15%)

Query: 19  ILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNVSFTVWDVGGQ---D 71
           +++VG  A GKT +L      +     +PT+  N      V+ K V   +WD  GQ   D
Sbjct: 28  LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYD 87

Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELRE-----AVLLVFANK 126
           ++RPL    + +T  ++     +  + +    ++        E++       ++LV  NK
Sbjct: 88  RLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWT-----PEVKHFCPNVPIILV-GNK 138

Query: 127 QDLPNAMSVSEVTDKLGLH 145
           +DL           K+   
Sbjct: 139 KDLRQDEHTRRELAKMKQE 157

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score = 44.0 bits (104), Expect = 5e-06
 Identities = 30/145 (20%), Positives = 52/145 (35%), Gaps = 29/145 (20%)

Query: 17  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN---VETVEYKNVSFTVWDVGGQ-- 70
           ++ ++VG  A GKT +L            +PT+  +     TV  K     ++D  GQ  
Sbjct: 19  LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 78

Query: 71  -DKIRPLWRHYFQNTHGLI--FVVDSNDRERIGEAKDELHRMLSE--DELRE-----AVL 120
            D++RPL    +  T   +  F V +               +  E   EL+E       L
Sbjct: 79  YDRLRPL---SYPMTDVFLICFSVVN---------PASFQNVKEEWVPELKEYAPNVPFL 126

Query: 121 LVFANKQDLPNAMSVSEVTDKLGLH 145
           L+   + DL +        + +   
Sbjct: 127 LI-GTQIDLRDDPKTLARLNDMKEK 150

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score = 43.7 bits (104), Expect = 6e-06
 Identities = 22/129 (17%), Positives = 52/129 (40%), Gaps = 14/129 (10%)

Query: 10  MLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNVSFT--VWD 66
           + F   E+++ +VG  ++GK+ ++++   G  V    P  G   + +     S+   + D
Sbjct: 14  LYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRD 73

Query: 67  VGGQDKIRPLWRHYFQNTHGLIFVVDSNDR---ERIGEAKDELHRMLSEDELREAVLLVF 123
            GG  +++     +      ++FV    D    + +      L    +  E+   ++LV 
Sbjct: 74  EGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEV--PMVLV- 125

Query: 124 ANKQDLPNA 132
             +  +  A
Sbjct: 126 GTQDAISAA 134

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score = 43.2 bits (102), Expect = 9e-06
 Identities = 29/145 (20%), Positives = 51/145 (35%), Gaps = 21/145 (14%)

Query: 13  ARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF----NVETVEYKNVSFTVWDVG 68
           + + ++ ++VG  A GKT +L                F        V+ K V+  +WD  
Sbjct: 2   SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 61

Query: 69  GQ---DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREA-----VL 120
           GQ   D++RPL    +  T   +              + + +      E+R       ++
Sbjct: 62  GQEDYDRLRPL---SYPQTDVSLICFSLVSPASFENVRAKWYP-----EVRHHCPNTPII 113

Query: 121 LVFANKQDLPNAMSVSEVTDKLGLH 145
           LV   K DL +     E   +  L 
Sbjct: 114 LV-GTKLDLRDDKDTIEKLKEKKLT 137

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 21/139 (15%)

Query: 17  MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEYKN------------VS 61
           +++L +G    GKTT LY+    +     I T+G  F  + V Y              V 
Sbjct: 26  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85

Query: 62  FTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDR---ERIGEAKDELHRMLSEDELREA 118
             +WD  GQ++ R L   +F++  G + + D   +     +     +L      +     
Sbjct: 86  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP--D 143

Query: 119 VLLVFANKQDLPNAMSVSE 137
           ++L+  NK DLP+   V+E
Sbjct: 144 IVLI-GNKADLPDQREVNE 161

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 29/126 (23%), Positives = 47/126 (37%), Gaps = 13/126 (10%)

Query: 18  RILMVGLDAAGKTTIL--YKLKLGE-IVTTIPTIG--FNVETVEY--KNVSFTVW--DVG 68
           ++ +VG    GK+ ++  +  K  + +     T G    V  V      VS  ++  D  
Sbjct: 22  KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81

Query: 69  GQDKIRPLWRHYFQNTHGLIFVVDSNDR---ERIGEAKDELHRMLSEDELREAVLLVFAN 125
           G D  +     Y+   +  I V D +     E      + L     + E     +LV AN
Sbjct: 82  GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLV-AN 140

Query: 126 KQDLPN 131
           K DLP 
Sbjct: 141 KTDLPP 146

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} Length = 354

 Score = 42.0 bits (98), Expect = 3e-05
 Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 11/105 (10%)

Query: 36  LKLGEIVTTIPTIGFNVETV-EYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSN 94
           L      T +  I F+     +     + ++DVGGQ   R  W H F+    +IF    +
Sbjct: 158 LYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAIS 217

Query: 95  DRERIGEAKDELHRMLSEDELREAV----------LLVFANKQDL 129
           + ++     ++ +RM+   EL + V           ++F NK D+
Sbjct: 218 EYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDI 262

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	180
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	100.0
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	100.0
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	100.0
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	100.0
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	100.0
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	100.0
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	100.0
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	100.0
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	100.0
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	100.0
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	100.0
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	100.0
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	100.0
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	100.0
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	100.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	100.0
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	100.0
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	100.0
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	100.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	100.0
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	100.0
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	100.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	100.0
2fh5_B	214	SR-beta, signal recognition particle receptor beta	100.0
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	100.0
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	100.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	100.0
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.98
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.98
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.98
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.98
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.98
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.98
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.98
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.98
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.98
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.98
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.97
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.97
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.97
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.97
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.97
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.97
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.97
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.97
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.97
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.97
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.97
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.97
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.97
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.97
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.97
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.97
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.97
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.97
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.94
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.96
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.96
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.96
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.96
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.96
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.96
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.96
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.95
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.95
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.95
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.95
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.94
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.94
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.94
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.94
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.94
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.94
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.94
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.94
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.94
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.94
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.93
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.93
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.93
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.93
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.93
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.93
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.93
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.93
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.92
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.92
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.92
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.92
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.92
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.92
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.91
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.91
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.91
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.91
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.91
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.91
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.9
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.9
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.9
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.9
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.9
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.9
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.9
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.9
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.9
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.89
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.89
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.89
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.89
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.89
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.89
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.89
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.89
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.89
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.88
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.88
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.88
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.88
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.88
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.88
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.87
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.87
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.87
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.87
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.85
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.85
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.85
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.84
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.84
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.83
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.83
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.83
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.82
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.82
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.82
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.82
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.79
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.78
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.77
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.77
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.75
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.75
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.73
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.73
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.73
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.73
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.72
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.72
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.71
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.7
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.68
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.67
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.67
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.65
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.64
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.63
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.6
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.59
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.58
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.56
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.55
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.43
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.32
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.18
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.16
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	99.15
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.11
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.03
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.03
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.01
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.95
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.9
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.87
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.85
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.85
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.72
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.63
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.54
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.51
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	98.35
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.31
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.31
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.14
2xxa_A	433	Signal recognition particle protein; protein trans	98.08
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.07
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.98
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.94
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.93
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.89
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.85
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.82
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.79
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.78
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.75
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.73
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	97.73
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.72
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.72
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.72
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.71
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.71
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.68
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.68
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.68
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.67
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.66
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.66
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.64
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.62
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.61
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.61
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.58
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.58
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.57
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.56
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.56
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.56
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.56
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.55
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.55
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.55
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.54
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.54
1g6h_A	257	High-affinity branched-chain amino acid transport	97.54
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.53
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.52
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.52
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.52
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.52
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.51
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.51
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.51
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.51
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.5
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.5
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.5
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.5
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.48
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.48
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.48
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.47
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.47
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.47
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.47
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.47
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.46
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	97.46
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.46
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.45
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.45
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	97.45
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.45
3end_A	307	Light-independent protochlorophyllide reductase ir	97.44
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.44
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.44
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	97.44
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.44
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.43
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.43
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.43
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	97.43
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.42
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.42
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.42
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.42
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.41
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.41
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.41
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.41
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.4
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.39
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.39
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.39
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	97.38
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.38
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.38
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	97.38
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.37
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.37
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.36
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	97.36
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.36
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.36
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.35
3cwq_A	209	Para family chromosome partitioning protein; alpha	97.35
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.35
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.35
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.34
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.34
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	97.33
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.32
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	97.32
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.32
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.31
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	97.31
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	97.3
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	97.3
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	97.3
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.3
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.3
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.3
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.29
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.29
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.28
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	97.28
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.28
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.27
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.27
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.27
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.25
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.25
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.25
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	97.25
1via_A	175	Shikimate kinase; structural genomics, transferase	97.25
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.24
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.24
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	97.23
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.23
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.23
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	97.22
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.22
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	97.21
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.21
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	97.21
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	97.21
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	97.2
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.2
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	97.2
3bos_A	242	Putative DNA replication factor; P-loop containing	97.19
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	97.18
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.17
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	97.16
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.14
3kta_A	182	Chromosome segregation protein SMC; structural mai	97.14
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	97.14
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.13
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.13
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.13
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.12
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.11
2og2_A	359	Putative signal recognition particle receptor; nuc	97.1
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.09
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.08
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	97.07
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	97.07
2chg_A	226	Replication factor C small subunit; DNA-binding pr	97.07
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.06
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.06
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.06
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.06
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.05
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	97.05
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.05
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.05
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.05
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.04
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	97.04
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	97.03
1tue_A	212	Replication protein E1; helicase, replication, E1E	97.02
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	97.01
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	97.01
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	97.01
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	97.0
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.99
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.98
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.98
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.97
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.95
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.94
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.93
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.93
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.92
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.92
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.92
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.91
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.89
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	96.88
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.87
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.87
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.87
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.86
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.86
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.85
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.84
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.81
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.81
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.81
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.81
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.8
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.8
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.77
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	96.77
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	96.76
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.75
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.74
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.74
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.74
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.73
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	96.73
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.72
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.72
3co5_A	143	Putative two-component system transcriptional RES	96.72
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.7
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.7
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.7
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	96.69
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.68
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.68
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.68
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.67
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.65
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	96.65
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.64
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.62
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.61
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.6
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.58
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.57
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.55
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.54
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.53
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	96.51
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.51
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.5
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.5
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.5
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	96.48
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.47
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	96.46
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.46
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	96.45
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.45
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	96.44
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.44
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.44
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	96.44
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	96.42
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.42
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	96.42
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.4
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	96.39
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.39
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	96.38
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	96.36
3pvs_A	447	Replication-associated recombination protein A; ma	96.36
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.35
1e69_A	322	Chromosome segregation SMC protein; structural mai	96.33
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	96.33
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.32
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.32
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	96.32
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	96.32

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=6.3e-39  Score=218.69  Aligned_cols=179  Identities=47%  Similarity=0.877  Sum_probs=154.0

Q ss_pred             CcchHHHHhhhcccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhh
Q 030289            1 MGMVISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHY   80 (180)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~   80 (180)
                      ||.+++++-+.+.++.+||+++|++|||||||+++|+++....+.+|.+.....+..++..+.+|||||++++...+..+
T Consensus         1 m~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~   80 (187)
T 1zj6_A            1 MGILFTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTY   80 (187)
T ss_dssp             -CHHHHHHHHHHTTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHH
T ss_pred             CchHHHHHHHhcCCCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHHH
Confidence            89889888558889999999999999999999999998886677889998888888899999999999999999999999


Q ss_pred             ccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeecc
Q 030289           81 FQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACAT  160 (180)
Q Consensus        81 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  160 (180)
                      ++++|++++|+|++++++++....|+..+.......+.|+++|+||+|+.+....+++.+.+....+...++++++|||+
T Consensus        81 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~  160 (187)
T 1zj6_A           81 YTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCAL  160 (187)
T ss_dssp             HTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTT
T ss_pred             hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCC
Confidence            99999999999999999999999999998776445689999999999998876677777766655455667899999999


Q ss_pred             CCCChHHHHHHHHHHhhhc
Q 030289          161 SGQGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       161 ~~~~i~~~~~~l~~~~~~~  179 (180)
                      +|.|++++++++.+.+...
T Consensus       161 ~g~gi~~l~~~l~~~~~~~  179 (187)
T 1zj6_A          161 TGEGLCQGLEWMMSRLKIR  179 (187)
T ss_dssp             TTBTHHHHHHHHHHHHCC-
T ss_pred             CCcCHHHHHHHHHHHHHHH
Confidence            9999999999999987653

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=4e-39  Score=218.71  Aligned_cols=179  Identities=56%  Similarity=0.980  Sum_probs=155.1

Q ss_pred             CcchHHHH-hhhcc-cCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHH
Q 030289            1 MGMVISRL-KMLFA-RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWR   78 (180)
Q Consensus         1 ~~~~~~~~-~~~~~-~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~   78 (180)
                      ||.+++++ +..+. ++.+||+++|++|||||||+++++++....+.+|.+.....+..++..+.+|||||++.+...+.
T Consensus         1 mg~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   80 (183)
T 1moz_A            1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWR   80 (183)
T ss_dssp             -CHHHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGG
T ss_pred             CchHHHHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHH
Confidence            89888877 66666 79999999999999999999999988877778899988888888899999999999999999999


Q ss_pred             hhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEee
Q 030289           79 HYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAAC  158 (180)
Q Consensus        79 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  158 (180)
                      .+++++|++++|+|++++++++....|+..+.......+.|+++|+||+|+.+....+++.+.++.......+++++++|
T Consensus        81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S  160 (183)
T 1moz_A           81 CYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASS  160 (183)
T ss_dssp             GTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEB
T ss_pred             HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEcc
Confidence            99999999999999999999999999999887654457899999999999988777777777777666666778999999


Q ss_pred             ccCCCChHHHHHHHHHHhhhc
Q 030289          159 ATSGQGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       159 a~~~~~i~~~~~~l~~~~~~~  179 (180)
                      |++|.|++++++++.+.+.++
T Consensus       161 a~~~~gi~~l~~~l~~~~~~~  181 (183)
T 1moz_A          161 AIKGEGITEGLDWLIDVIKEE  181 (183)
T ss_dssp             GGGTBTHHHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHhc
Confidence            999999999999999998765

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=100.00  E-value=4.5e-39  Score=219.72  Aligned_cols=179  Identities=52%  Similarity=0.986  Sum_probs=155.9

Q ss_pred             CcchHHHH-h--hhcc-cCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhh
Q 030289            1 MGMVISRL-K--MLFA-RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPL   76 (180)
Q Consensus         1 ~~~~~~~~-~--~~~~-~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   76 (180)
                      ||.+++++ +  +.+. ++.+||+++|++|||||||+++|+.+.+..+.||.+.....+..++..+.+|||||++.+...
T Consensus         3 m~~~~~~~~~~l~~f~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~   82 (189)
T 2x77_A            3 MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPY   82 (189)
T ss_dssp             ---CCSCHHHHHHTSCTTSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEEEETTEEEEEEEECCSSSSCCC
T ss_pred             hHHHHHHHHHHhhhccCCCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEEEECCEEEEEEECCCCHhHHHH
Confidence            67666654 2  4566 789999999999999999999999888777888999888888889999999999999999999


Q ss_pred             HHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEE
Q 030289           77 WRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQA  156 (180)
Q Consensus        77 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (180)
                      +..+++++|++++|+|++++++++....|+..+.......+.|+++|+||+|+.+....+++...++.......++++++
T Consensus        83 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (189)
T 2x77_A           83 WRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVK  162 (189)
T ss_dssp             CSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred             HHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEE
Confidence            99999999999999999999999999999998877655568999999999999887777777777776666677889999


Q ss_pred             eeccCCCChHHHHHHHHHHhhhc
Q 030289          157 ACATSGQGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       157 ~Sa~~~~~i~~~~~~l~~~~~~~  179 (180)
                      |||+++.|++++++++.+.+.++
T Consensus       163 ~Sa~~~~gi~~l~~~l~~~i~~~  185 (189)
T 2x77_A          163 SSSKTGDGLVEGMDWLVERLREQ  185 (189)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHHT
T ss_pred             ccCCCccCHHHHHHHHHHHHHhc
Confidence            99999999999999999998765

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=100.00  E-value=1.8e-38  Score=216.20  Aligned_cols=178  Identities=46%  Similarity=0.864  Sum_probs=148.2

Q ss_pred             CcchHHHHhhhcc-cCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHh
Q 030289            1 MGMVISRLKMLFA-RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRH   79 (180)
Q Consensus         1 ~~~~~~~~~~~~~-~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~   79 (180)
                      || .++.+++.+. ++.+||+++|++|||||||+++++++....+.||.+.....+..++..+.+|||||++++...+..
T Consensus         3 mg-~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~   81 (186)
T 1ksh_A            3 MG-LLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRN   81 (186)
T ss_dssp             ---------------CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGG
T ss_pred             cc-hhHHHHhhcccCCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence            66 4554566666 789999999999999999999999888667788999888888889999999999999999989999


Q ss_pred             hccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeec
Q 030289           80 YFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACA  159 (180)
Q Consensus        80 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (180)
                      +++++|++++|+|++++++++....|+..+.......+.|+++|+||+|+.++...+++.+.+........+++++++||
T Consensus        82 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  161 (186)
T 1ksh_A           82 YFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSA  161 (186)
T ss_dssp             GCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCT
T ss_pred             HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeC
Confidence            99999999999999999999999999998877655578999999999999887777777777665555567789999999


Q ss_pred             cCCCChHHHHHHHHHHhhhc
Q 030289          160 TSGQGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       160 ~~~~~i~~~~~~l~~~~~~~  179 (180)
                      ++|.|++++++++.+.+.++
T Consensus       162 ~~~~gi~~l~~~l~~~i~~~  181 (186)
T 1ksh_A          162 VTGEDLLPGIDWLLDDISSR  181 (186)
T ss_dssp             TTCTTHHHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhc
Confidence            99999999999999988764

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=100.00  E-value=4.1e-38  Score=215.62  Aligned_cols=171  Identities=80%  Similarity=1.303  Sum_probs=149.8

Q ss_pred             hhhcccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289            9 KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLI   88 (180)
Q Consensus         9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   88 (180)
                      ++.+.++.+||+++|++|||||||+++|+.+.+..+.||++.....+...+..+.+|||||++.+...+..+++++|+++
T Consensus        22 ~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  101 (192)
T 2b6h_A           22 SRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLI  101 (192)
T ss_dssp             GGTTTTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred             HHhccCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            66778899999999999999999999999888777788999888888889999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289           89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG  168 (180)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (180)
                      +|+|++++++++....|+..+.......+.|+++|+||+|+.+....+++...++.......++++++|||++|.|++++
T Consensus       102 lv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  181 (192)
T 2b6h_A          102 FVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDG  181 (192)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHHHH
Confidence            99999999999999999999877655568999999999999887777788888777666677889999999999999999


Q ss_pred             HHHHHHHhhhc
Q 030289          169 LDWLSSNVSAK  179 (180)
Q Consensus       169 ~~~l~~~~~~~  179 (180)
                      |+++.+.+.++
T Consensus       182 ~~~l~~~i~~q  192 (192)
T 2b6h_A          182 LDWLSHELSKR  192 (192)
T ss_dssp             HHHHHHHTTTC
T ss_pred             HHHHHHHHhcC
Confidence            99999988764

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=100.00  E-value=2.1e-37  Score=207.90  Aligned_cols=167  Identities=58%  Similarity=1.017  Sum_probs=151.3

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEEC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDS   93 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   93 (180)
                      .+.+||+++|++|||||||+++|.++.+..+.||.+.....+...+..+.+|||||++.+...+..+++++|++++|+|+
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~   84 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDS   84 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEET
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEEC
Confidence            56899999999999999999999988877788999988888888999999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHH
Q 030289           94 NDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLS  173 (180)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  173 (180)
                      ++++++.....|+..+.......+.|+++|+||+|+.+....+++...++...+...+++++++||++|.|++++++++.
T Consensus        85 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  164 (171)
T 1upt_A           85 CDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLV  164 (171)
T ss_dssp             TCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHH
Confidence            99999999999999887765557899999999999988777777777777666667788999999999999999999999


Q ss_pred             HHhhhcC
Q 030289          174 SNVSAKG  180 (180)
Q Consensus       174 ~~~~~~~  180 (180)
                      +.+.++|
T Consensus       165 ~~i~~~q  171 (171)
T 1upt_A          165 ETLKSRQ  171 (171)
T ss_dssp             HHHHTCC
T ss_pred             HHHhhcC
Confidence            9998775

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=100.00  E-value=1.3e-37  Score=211.29  Aligned_cols=166  Identities=48%  Similarity=0.861  Sum_probs=146.4

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEEC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDS   93 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   93 (180)
                      .+.+||+++|++|||||||+++|.+.....+.||.+.....+...+..+.+|||||++.++..+..+++++|++++|+|+
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~   93 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDS   93 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEET
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEEC
Confidence            68899999999999999999999988877778899988888888999999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHH
Q 030289           94 NDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLS  173 (180)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  173 (180)
                      +++++++....|+..++......+.|+++|+||+|+.+....+++.+.++.......++++++|||++|.|++++|+++.
T Consensus        94 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~  173 (181)
T 1fzq_A           94 ADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVC  173 (181)
T ss_dssp             TCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHH
Confidence            99999999999998887654456899999999999988777777777766655556678999999999999999999999


Q ss_pred             HHhhhc
Q 030289          174 SNVSAK  179 (180)
Q Consensus       174 ~~~~~~  179 (180)
                      +.+.++
T Consensus       174 ~~~~~~  179 (181)
T 1fzq_A          174 KNVNAK  179 (181)
T ss_dssp             HTC---
T ss_pred             HHHHhc
Confidence            987654

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=8.5e-39  Score=222.17  Aligned_cols=161  Identities=15%  Similarity=0.334  Sum_probs=123.1

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEE--EEE--cCeEEEEEEcCCCCCChhhHHhhccccCE
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVET--VEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHG   86 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   86 (180)
                      .|.++|||+|+|++|||||||+++|..+. ...+.||++..+..  +..  ..+.+.+|||+|+++|..+++.+++++++
T Consensus         9 ~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~   88 (216)
T 4dkx_A            9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAA   88 (216)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSE
T ss_pred             CCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccE
Confidence            46789999999999999999999999888 55667898866543  333  45788999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCC
Q 030289           87 LIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQG  164 (180)
Q Consensus        87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  164 (180)
                      +++|||++++++++.+..|+..+.... .+++|+++|+||+|+.+.+.  .++..     ..+...+++|++|||++|.|
T Consensus        89 ~ilv~di~~~~Sf~~i~~~~~~i~~~~-~~~~piilVgNK~Dl~~~r~V~~~e~~-----~~a~~~~~~~~e~SAktg~n  162 (216)
T 4dkx_A           89 AVVVYDITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGE-----RKAKELNVMFIETSAKAGYN  162 (216)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHH-----HHHHHHTCEEEEEBTTTTBS
T ss_pred             EEEEeecchhHHHHHHHHHHHHHHHhc-CCCCeEEEEeeccchHhcCcccHHHHh-----hHHHHhCCeeEEEeCCCCcC
Confidence            999999999999999999999886543 36799999999999976433  33222     22334567899999999999


Q ss_pred             hHHHHHHHHHHhhh
Q 030289          165 LYEGLDWLSSNVSA  178 (180)
Q Consensus       165 i~~~~~~l~~~~~~  178 (180)
                      |+++|+.|++.+.+
T Consensus       163 V~e~F~~i~~~i~~  176 (216)
T 4dkx_A          163 VKQLFRRVAAALPG  176 (216)
T ss_dssp             HHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998754

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=100.00  E-value=1.9e-37  Score=206.92  Aligned_cols=163  Identities=86%  Similarity=1.366  Sum_probs=144.9

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCCh
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDR   96 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~   96 (180)
                      +||+++|++|||||||+++|+++.+..+.||.+.....+...+..+.+|||||++.+...+..+++++|++++|+|++++
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~   80 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR   80 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCH
Confidence            58999999999999999999988877778899988888888999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHHh
Q 030289           97 ERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV  176 (180)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  176 (180)
                      ++++....|+..+.......+.|+++|+||+|+.+....+++...++.......++++++|||++|.|++++|+++.+.+
T Consensus        81 ~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  160 (164)
T 1r8s_A           81 ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL  160 (164)
T ss_dssp             GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHH
Confidence            99999999999887765557899999999999988766777777777666666788999999999999999999999988


Q ss_pred             hhc
Q 030289          177 SAK  179 (180)
Q Consensus       177 ~~~  179 (180)
                      .++
T Consensus       161 ~~~  163 (164)
T 1r8s_A          161 RNQ  163 (164)
T ss_dssp             ---
T ss_pred             hhc
Confidence            764

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=100.00  E-value=1.1e-36  Score=207.91  Aligned_cols=171  Identities=30%  Similarity=0.624  Sum_probs=146.8

Q ss_pred             hhhcccCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEE
Q 030289            9 KMLFARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGL   87 (180)
Q Consensus         9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   87 (180)
                      .....++.+||+++|++|||||||+++|+++.+ ..+.+|.+..+..+...+..+.+||+||++.+...+..+++++|++
T Consensus        15 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   94 (188)
T 1zd9_A           15 VPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAI   94 (188)
T ss_dssp             ----CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEE
T ss_pred             cccCCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEE
Confidence            344557789999999999999999999998874 4567899988888888999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHH
Q 030289           88 IFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYE  167 (180)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  167 (180)
                      ++|+|++++++++.+..|+..+.......+.|+++|+||+|+.+....+++...+........++++++|||++|.|+++
T Consensus        95 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~  174 (188)
T 1zd9_A           95 VYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDI  174 (188)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHH
Confidence            99999999999999999999887754456899999999999988766677777766655556778999999999999999


Q ss_pred             HHHHHHHHhhhc
Q 030289          168 GLDWLSSNVSAK  179 (180)
Q Consensus       168 ~~~~l~~~~~~~  179 (180)
                      +|+++.+.+.++
T Consensus       175 l~~~l~~~~~~~  186 (188)
T 1zd9_A          175 TLQWLIQHSKSR  186 (188)
T ss_dssp             HHHHHHHTCC--
T ss_pred             HHHHHHHHHHhh
Confidence            999999987654

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=100.00  E-value=2.3e-36  Score=207.92  Aligned_cols=165  Identities=30%  Similarity=0.596  Sum_probs=134.5

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV   91 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (180)
                      +..+.+||+++|++|||||||+++|.++.+..+.||.+.....+..++..+.+|||||++.++..+..+++++|++++|+
T Consensus        21 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~  100 (198)
T 1f6b_A           21 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLV  100 (198)
T ss_dssp             CTTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEE
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEE
Confidence            55778999999999999999999999888777778888888888888999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCc---------c---CCcceEEEEeec
Q 030289           92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHS---------L---RQRRWYIQAACA  159 (180)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~---------~---~~~~~~~~~~Sa  159 (180)
                      |++++++++....|+..+.......++|+++|+||+|+.+....+++.+......         .   ...++++++|||
T Consensus       101 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA  180 (198)
T 1f6b_A          101 DCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV  180 (198)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBT
T ss_pred             ECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEEC
Confidence            9999999999999999887765556899999999999987666666666554322         1   124679999999


Q ss_pred             cCCCChHHHHHHHHHHh
Q 030289          160 TSGQGLYEGLDWLSSNV  176 (180)
Q Consensus       160 ~~~~~i~~~~~~l~~~~  176 (180)
                      ++|.|++++|+++.+.+
T Consensus       181 ~~g~gv~~l~~~l~~~l  197 (198)
T 1f6b_A          181 LKRQGYGEGFRWMAQYI  197 (198)
T ss_dssp             TTTBSHHHHHHHHHTTC
T ss_pred             CCCCCHHHHHHHHHHhc
Confidence            99999999999998765

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=100.00  E-value=1.7e-36  Score=205.68  Aligned_cols=168  Identities=47%  Similarity=0.857  Sum_probs=144.0

Q ss_pred             hhhcccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289            9 KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLI   88 (180)
Q Consensus         9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   88 (180)
                      ......+.+||+++|++|||||||+++|+++.+..+.+|.+.....+..++..+.+|||||++++...+..+++++|+++
T Consensus        14 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   93 (181)
T 2h17_A           14 LVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVI   93 (181)
T ss_dssp             -------CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEE
T ss_pred             ccCCCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            44556788999999999999999999999988877778999888888889999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289           89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG  168 (180)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (180)
                      +|+|++++++++....|+..+.......+.|+++|+||+|+.+....+++.+.+........++++++|||++|.|++++
T Consensus        94 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l  173 (181)
T 2h17_A           94 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQG  173 (181)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHH
Confidence            99999999999999999998876544578999999999999887777777777766656667789999999999999999


Q ss_pred             HHHHHHHh
Q 030289          169 LDWLSSNV  176 (180)
Q Consensus       169 ~~~l~~~~  176 (180)
                      |+++.+.+
T Consensus       174 ~~~l~~~l  181 (181)
T 2h17_A          174 LEWMMSRL  181 (181)
T ss_dssp             HHHHHTC-
T ss_pred             HHHHHhhC
Confidence            99998753

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=100.00  E-value=5.8e-36  Score=204.61  Aligned_cols=165  Identities=36%  Similarity=0.599  Sum_probs=140.8

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV   91 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (180)
                      +..+.+||+++|++|||||||++++.++.+..+.+|.+.....+..++..+.+|||||++.++..+..+++++|++++|+
T Consensus        19 ~~~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   98 (190)
T 1m2o_B           19 LWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLV   98 (190)
T ss_dssp             -----CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEE
T ss_pred             ccCCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEE
Confidence            45678999999999999999999999988777888999888888899999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCc-------cCCcceEEEEeeccCCCC
Q 030289           92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHS-------LRQRRWYIQAACATSGQG  164 (180)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~Sa~~~~~  164 (180)
                      |++++++++....|+..+.......+.|+++|+||+|+.+....+++.+......       ....++++++|||++|.|
T Consensus        99 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  178 (190)
T 1m2o_B           99 DAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNG  178 (190)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBS
T ss_pred             ECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCC
Confidence            9999999999999999987765557899999999999988666777766655432       234567999999999999


Q ss_pred             hHHHHHHHHHHh
Q 030289          165 LYEGLDWLSSNV  176 (180)
Q Consensus       165 i~~~~~~l~~~~  176 (180)
                      ++++|+++.+.+
T Consensus       179 i~~l~~~l~~~l  190 (190)
T 1m2o_B          179 YLEAFQWLSQYI  190 (190)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHhhC
Confidence            999999998753

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=100.00  E-value=2.9e-36  Score=207.14  Aligned_cols=171  Identities=37%  Similarity=0.645  Sum_probs=145.3

Q ss_pred             hhhcccCccEEEEEcCCCCChHHHHHHhhcCCcc--ccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCE
Q 030289            9 KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHG   86 (180)
Q Consensus         9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   86 (180)
                      ....+...+||+|+|++|||||||+++|+++.+.  .+.+|++.....+...+..+.+|||||++.+...+..+++++|+
T Consensus        10 ~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   89 (199)
T 4bas_A           10 HMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDA   89 (199)
T ss_dssp             ------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSE
T ss_pred             cccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCE
Confidence            4566788999999999999999999999998844  45889998888888899999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhccccc-------CCCeEEEEEecCCCCCCCCHhHHHhHhCCCcc-CCcceEEEEee
Q 030289           87 LIFVVDSNDRERIGEAKDELHRMLSEDEL-------REAVLLVFANKQDLPNAMSVSEVTDKLGLHSL-RQRRWYIQAAC  158 (180)
Q Consensus        87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-------~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S  158 (180)
                      +++|||++++++++.+..|+..+......       .++|+++|+||+|+.+....+++...++.... ...++++++||
T Consensus        90 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  169 (199)
T 4bas_A           90 VIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASN  169 (199)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECB
T ss_pred             EEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEee
Confidence            99999999999999999999988765322       27899999999999988777777777765544 55678999999


Q ss_pred             ccCCCChHHHHHHHHHHhhhc
Q 030289          159 ATSGQGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       159 a~~~~~i~~~~~~l~~~~~~~  179 (180)
                      |++|.||+++|++|.+.+.++
T Consensus       170 a~~g~gv~~l~~~l~~~~~~~  190 (199)
T 4bas_A          170 GLKGTGVHEGFSWLQETASRQ  190 (199)
T ss_dssp             TTTTBTHHHHHHHHHHHHHHH
T ss_pred             CCCccCHHHHHHHHHHHHHHH
Confidence            999999999999999988654

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=100.00  E-value=7.5e-36  Score=203.92  Aligned_cols=170  Identities=41%  Similarity=0.731  Sum_probs=142.3

Q ss_pred             hhhcccCccEEEEEcCCCCChHHHHHHhhcCC--ccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCE
Q 030289            9 KMLFARKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHG   86 (180)
Q Consensus         9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~--~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   86 (180)
                      ......+.+||+++|++|||||||+++|++..  ...+.+|.+.....+..++..+.+|||||++.+...+..+++++|+
T Consensus        14 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   93 (190)
T 2h57_A           14 LVPRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQA   93 (190)
T ss_dssp             -------CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSE
T ss_pred             cccCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence            34445788999999999999999999999876  4566789998888888889999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhccccc--CCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCC
Q 030289           87 LIFVVDSNDRERIGEAKDELHRMLSEDEL--REAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQG  164 (180)
Q Consensus        87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  164 (180)
                      +++|+|++++++++....|+..+......  .+.|+++|+||+|+.+....+++.+..........++++++|||++|.|
T Consensus        94 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  173 (190)
T 2h57_A           94 IIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEG  173 (190)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcC
Confidence            99999999999999999999888765433  5799999999999988777777776665444445678999999999999


Q ss_pred             hHHHHHHHHHHhhh
Q 030289          165 LYEGLDWLSSNVSA  178 (180)
Q Consensus       165 i~~~~~~l~~~~~~  178 (180)
                      ++++|+++.+.+.+
T Consensus       174 i~~l~~~l~~~i~~  187 (190)
T 2h57_A          174 LQEGVDWLQDQIQT  187 (190)
T ss_dssp             HHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998764

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=100.00  E-value=3.4e-35  Score=216.00  Aligned_cols=169  Identities=85%  Similarity=1.359  Sum_probs=148.2

Q ss_pred             hcccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289           11 LFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV   90 (180)
Q Consensus        11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (180)
                      .+..+.+||+|+|++|||||||+++|.++.+....||++..+..+...++.+.+|||||++.+...+..+++.+|++++|
T Consensus       160 ~~~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV  239 (329)
T 3o47_A          160 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV  239 (329)
T ss_dssp             ---CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEE
T ss_pred             ccccCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence            34567889999999999999999999998877777899999999999999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHH
Q 030289           91 VDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLD  170 (180)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  170 (180)
                      ||++++++++.+..|+..++......++|+++|+||+|+.+....+++...++.......++++++|||++|.||+++|+
T Consensus       240 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~  319 (329)
T 3o47_A          240 VDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLD  319 (329)
T ss_dssp             EETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHH
T ss_pred             EECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHH
Confidence            99999999999999998888776667899999999999998878888888888887777889999999999999999999


Q ss_pred             HHHHHhhhc
Q 030289          171 WLSSNVSAK  179 (180)
Q Consensus       171 ~l~~~~~~~  179 (180)
                      +|.+.+.++
T Consensus       320 ~l~~~l~~~  328 (329)
T 3o47_A          320 WLSNQLRNQ  328 (329)
T ss_dssp             HHHHHHTC-
T ss_pred             HHHHHHHhc
Confidence            999998765

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=1.9e-34  Score=195.72  Aligned_cols=166  Identities=14%  Similarity=0.160  Sum_probs=130.3

Q ss_pred             hhhcccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeE-EEEEEc--CeEEEEEEcCCCCCChhhHHhhcccc
Q 030289            9 KMLFARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV-ETVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNT   84 (180)
Q Consensus         9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~   84 (180)
                      ......+.+||+++|++|||||||+|+|.++. ...+.+|.+..+ ..+...  .+.+.+||+||++.+...+..+++++
T Consensus        11 ~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~   90 (183)
T 3kkq_A           11 VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG   90 (183)
T ss_dssp             ---CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHC
T ss_pred             CCccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcC
Confidence            34456778999999999999999999999877 445556766544 233333  35677899999999999999999999


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeecc-C
Q 030289           85 HGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACAT-S  161 (180)
Q Consensus        85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~-~  161 (180)
                      |++++|||++++++++.+..|+..+.......++|+++|+||+|+.+...  .++...     .+...+++++++||+ +
T Consensus        91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~~~Sa~~~  165 (183)
T 3kkq_A           91 DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKE-----MATKYNIPYIETSAKDP  165 (183)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHH-----HHHHHTCCEEEEBCSSS
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHH-----HHHHhCCeEEEeccCCC
Confidence            99999999999999999999988887654456899999999999976332  222221     112234679999999 9


Q ss_pred             CCChHHHHHHHHHHhhhc
Q 030289          162 GQGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       162 ~~~i~~~~~~l~~~~~~~  179 (180)
                      +.|++++|+++.+.+.++
T Consensus       166 ~~~v~~l~~~l~~~i~~q  183 (183)
T 3kkq_A          166 PLNVDKTFHDLVRVIRQQ  183 (183)
T ss_dssp             CBSHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHhhC
Confidence            999999999999998764

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=4.3e-34  Score=190.98  Aligned_cols=160  Identities=15%  Similarity=0.166  Sum_probs=107.5

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEE-EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE-TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV   91 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (180)
                      +.+||+++|++|||||||+|+|.+.......++.+..+. .+..  ....+.+||+||++.+...+..+++.+|++++||
T Consensus         1 ~~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (166)
T 3q72_A            1 SVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   80 (166)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence            368999999999999999999997775554555554432 2333  4568899999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCH--hHHHhHhCCCccCCcceEEEEeeccCCCChHHHH
Q 030289           92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSV--SEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGL  169 (180)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  169 (180)
                      |++++++++.+..|+..+.......++|+++|+||+|+.++...  ++.. .    .....+++++++||++|.|++++|
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~-~----~~~~~~~~~~~~Sa~~~~gi~~l~  155 (166)
T 3q72_A           81 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGR-A----CAVVFDCKFIETSAALHHNVQALF  155 (166)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHH-H----HHHHTTCEEEECBGGGTBSHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHH-H----HHHHhCCcEEEeccCCCCCHHHHH
Confidence            99999999999999998877655578999999999999764432  2211 1    112234689999999999999999


Q ss_pred             HHHHHHhhhc
Q 030289          170 DWLSSNVSAK  179 (180)
Q Consensus       170 ~~l~~~~~~~  179 (180)
                      +++.+.+.++
T Consensus       156 ~~l~~~~~~~  165 (166)
T 3q72_A          156 EGVVRQIRLR  165 (166)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999998765

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=2e-34  Score=192.98  Aligned_cols=164  Identities=18%  Similarity=0.363  Sum_probs=127.6

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeE--EEEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEE
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV--ETVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF   89 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   89 (180)
                      +++||+++|++|||||||+++|.++. ...+.+|.+..+  ..+..  ....+.+||+||++.+...+..+++++|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            46899999999999999999999888 445567777554  34444  34689999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHH
Q 030289           90 VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGL  169 (180)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  169 (180)
                      |+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.++....++........+...+++++++||++|.|++++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  160 (170)
T 1ek0_A           82 VYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF  160 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHH
T ss_pred             EEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            999999999999999988876543 3579999999999986541111111111111122345689999999999999999


Q ss_pred             HHHHHHhhhc
Q 030289          170 DWLSSNVSAK  179 (180)
Q Consensus       170 ~~l~~~~~~~  179 (180)
                      +++.+.+.++
T Consensus       161 ~~l~~~i~~k  170 (170)
T 1ek0_A          161 LGIGEKIPLK  170 (170)
T ss_dssp             HHHHTTSCCC
T ss_pred             HHHHHHHhhC
Confidence            9999887653

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=100.00  E-value=2.3e-33  Score=187.42  Aligned_cols=159  Identities=18%  Similarity=0.273  Sum_probs=126.9

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEEE-EEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET-VEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF   89 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   89 (180)
                      ++.+||+++|++|||||||+++|.++.+ ..+.+|.+..+.. +..  ....+.+||+||++.+...+..+++++|++++
T Consensus         1 m~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   80 (167)
T 1c1y_A            1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            3578999999999999999999998773 4455676654432 223  35689999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCC-cceEEEEeeccCCCChH
Q 030289           90 VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQ-RRWYIQAACATSGQGLY  166 (180)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~  166 (180)
                      |||++++.+++.+..|+..+.......+.|+++|+||+|+.++..  .++....     ... .+.+++++||++|.|++
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~gi~  155 (167)
T 1c1y_A           81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNL-----ARQWCNCAFLESSAKSKINVN  155 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHH-----HHHTTSCEEEECBTTTTBSHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHH-----HHHccCCcEEEecCCCCCCHH
Confidence            999999999999998888876654446899999999999975432  2222221     111 25689999999999999


Q ss_pred             HHHHHHHHHhh
Q 030289          167 EGLDWLSSNVS  177 (180)
Q Consensus       167 ~~~~~l~~~~~  177 (180)
                      ++++++.+.+.
T Consensus       156 ~l~~~l~~~i~  166 (167)
T 1c1y_A          156 EIFYDLVRQIN  166 (167)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999998874

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=2.8e-33  Score=188.43  Aligned_cols=161  Identities=15%  Similarity=0.128  Sum_probs=117.4

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCcccccccccee--EEEEEEc--CeEEEEEEcCCCCC--ChhhHHhhccccCEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYK--NVSFTVWDVGGQDK--IRPLWRHYFQNTHGL   87 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~--~~~~~~~--~~~~~i~D~~G~~~--~~~~~~~~~~~~~~~   87 (180)
                      ++.+||+++|++|||||||+++|.+.......++.+..  ...+...  .+.+.+|||||++.  +......+++.+|++
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~   81 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY   81 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence            46799999999999999999999988755444555543  3444554  35789999999987  567788889999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCCh
Q 030289           88 IFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGL  165 (180)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  165 (180)
                      ++|||++++.+++.+..|+..+.......++|+++|+||+|+.+...  .++...     .....+++++++||++|.|+
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~~~Sa~~g~gi  156 (175)
T 2nzj_A           82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRA-----CAVVFDCKFIETSATLQHNV  156 (175)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHH-----HHHHHTSEEEECBTTTTBSH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHH-----HHHHcCCeEEEEecCCCCCH
Confidence            99999999999999999988876654445799999999999976433  222211     11223468999999999999


Q ss_pred             HHHHHHHHHHhhhc
Q 030289          166 YEGLDWLSSNVSAK  179 (180)
Q Consensus       166 ~~~~~~l~~~~~~~  179 (180)
                      +++|+++.+.+.++
T Consensus       157 ~~l~~~l~~~~~~~  170 (175)
T 2nzj_A          157 AELFEGVVRQLRLR  170 (175)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999988653

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=100.00  E-value=2.6e-33  Score=187.13  Aligned_cols=161  Identities=20%  Similarity=0.288  Sum_probs=126.7

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE-EEEEc--CeEEEEEEcCCCCCChhhHHhhccccCEEEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE-TVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF   89 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   89 (180)
                      ++.+||+++|++|+|||||+++|.++.+ ..+.+|.+..+. .+...  .+.+.+||+||++++...+..+++++|++++
T Consensus         2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (168)
T 1u8z_A            2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence            4679999999999999999999998873 444566664443 34443  4689999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC--CHhHHHhHhCCCccCCcceEEEEeeccCCCChHH
Q 030289           90 VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM--SVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYE  167 (180)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  167 (180)
                      |||++++++++....|+..+.......+.|+++|+||+|+.++.  ..++....     +...+++++++||++|.|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~  156 (168)
T 1u8z_A           82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNR-----ADQWNVNYVETSAKTRANVDK  156 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHH-----HHHHTCEEEECCTTTCTTHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHH-----HHHcCCeEEEeCCCCCCCHHH
Confidence            99999999999999998888765444589999999999986533  23332222     123356899999999999999


Q ss_pred             HHHHHHHHhhhc
Q 030289          168 GLDWLSSNVSAK  179 (180)
Q Consensus       168 ~~~~l~~~~~~~  179 (180)
                      +|+++.+.+.++
T Consensus       157 l~~~l~~~i~~~  168 (168)
T 1u8z_A          157 VFFDLMREIRAR  168 (168)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhC
Confidence            999999988754

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=100.00  E-value=4.5e-33  Score=192.14  Aligned_cols=167  Identities=20%  Similarity=0.272  Sum_probs=131.0

Q ss_pred             HHhhhcccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeE-EEEEEcC--eEEEEEEcCCCCCChhhHHhhcc
Q 030289            7 RLKMLFARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV-ETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQ   82 (180)
Q Consensus         7 ~~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~-~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~   82 (180)
                      ..++..+++.+||+|+|++|||||||+++|.++. ...+.+|.+..+ ..+...+  +.+.+||+||++.+...+..+++
T Consensus         5 ~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   84 (206)
T 2bov_A            5 KPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFR   84 (206)
T ss_dssp             ------CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHH
T ss_pred             cccCCCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHh
Confidence            4455667788999999999999999999999887 344556666443 3444443  58999999999999999999999


Q ss_pred             ccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC--CHhHHHhHhCCCccCCcceEEEEeecc
Q 030289           83 NTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM--SVSEVTDKLGLHSLRQRRWYIQAACAT  160 (180)
Q Consensus        83 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~  160 (180)
                      .+|++++|||++++++++.+..|+..+.......++|+++|+||+|+.+..  ..++....     +...+++++++||+
T Consensus        85 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~  159 (206)
T 2bov_A           85 SGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNR-----AEQWNVNYVETSAK  159 (206)
T ss_dssp             HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHH-----HHHHTCEEEEECTT
T ss_pred             hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHH-----HHHhCCeEEEEeCC
Confidence            999999999999999999999998888765444589999999999997633  23333222     12335689999999


Q ss_pred             CCCChHHHHHHHHHHhhh
Q 030289          161 SGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       161 ~~~~i~~~~~~l~~~~~~  178 (180)
                      +|.|++++|+++.+.+.+
T Consensus       160 ~g~gi~~l~~~l~~~i~~  177 (206)
T 2bov_A          160 TRANVDKVFFDLMREIRA  177 (206)
T ss_dssp             TCTTHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999998765

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=1.6e-32  Score=186.70  Aligned_cols=161  Identities=17%  Similarity=0.247  Sum_probs=125.3

Q ss_pred             hhhcccCccEEEEEcCCCCChHHHHHHhhcCCcc-ccccccceeEEEEEEcC--eEEEEEEcCCCCCChhhHHhhccccC
Q 030289            9 KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTH   85 (180)
Q Consensus         9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~   85 (180)
                      ....+.+.+||+++|++|||||||+++|+++.+. .+.+|.+.....+...+  +.+.+|||+|++.+.     +++++|
T Consensus        13 ~~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~   87 (184)
T 3ihw_A           13 NLYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVD   87 (184)
T ss_dssp             ---CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCS
T ss_pred             CCCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCC
Confidence            4455688999999999999999999999988843 45566554445566654  678889999998876     778899


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC----CCCHhHHHhHhCCCccCCc-ceEEEEeecc
Q 030289           86 GLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN----AMSVSEVTDKLGLHSLRQR-RWYIQAACAT  160 (180)
Q Consensus        86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~  160 (180)
                      ++++|||++++.+++.+..|+..+.......+.|+++|+||+|+..    ....++....     +... .+++++|||+
T Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~-----~~~~~~~~~~e~Sa~  162 (184)
T 3ihw_A           88 AVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKL-----STDLKRCTYYETCAT  162 (184)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHH-----HHHTTTCEEEEEBTT
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHH-----HHHcCCCeEEEecCC
Confidence            9999999999999999999999987665446799999999999842    2222222211     1122 2689999999


Q ss_pred             CCCChHHHHHHHHHHhhhc
Q 030289          161 SGQGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       161 ~~~~i~~~~~~l~~~~~~~  179 (180)
                      +|.||+++|+++.+.+.++
T Consensus       163 ~~~gv~~lf~~l~~~i~~~  181 (184)
T 3ihw_A          163 YGLNVERVFQDVAQKVVAL  181 (184)
T ss_dssp             TTBTHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHH
Confidence            9999999999999988764

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=1.8e-33  Score=190.54  Aligned_cols=161  Identities=16%  Similarity=0.178  Sum_probs=128.2

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeE-EEEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEEEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV-ETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGLIF   89 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~-~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   89 (180)
                      .+.+||+++|++|||||||+++|.++. ...+.+|.+..+ ..+...+  +.+.+|||||++.+...+..+++++|++++
T Consensus         4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~   83 (181)
T 3t5g_A            4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL   83 (181)
T ss_dssp             EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEE
Confidence            468999999999999999999999777 445567777554 3344444  678999999999999899999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChHH
Q 030289           90 VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYE  167 (180)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  167 (180)
                      |||++++++++.+..|+..+.......++|+++|+||+|+.++..  .++....     +...+++++++||++|.|+++
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~~  158 (181)
T 3t5g_A           84 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKAL-----AESWNAAFLESSAKENQTAVD  158 (181)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHH-----HHHTTCEEEECCTTSHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHH-----HHHhCCcEEEEecCCCCCHHH
Confidence            999999999999999998887665556899999999999965433  2222211     223356899999999999999


Q ss_pred             HHHHHHHHhhhc
Q 030289          168 GLDWLSSNVSAK  179 (180)
Q Consensus       168 ~~~~l~~~~~~~  179 (180)
                      +|+++.+.+.++
T Consensus       159 l~~~l~~~~~~~  170 (181)
T 3t5g_A          159 VFRRIILEAEKM  170 (181)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHh
Confidence            999999988764

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1e-33  Score=195.04  Aligned_cols=168  Identities=14%  Similarity=0.153  Sum_probs=126.0

Q ss_pred             hhhcccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEE---EEEcCeEEEEEEcCCCCCChhhHHhhcccc
Q 030289            9 KMLFARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVET---VEYKNVSFTVWDVGGQDKIRPLWRHYFQNT   84 (180)
Q Consensus         9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   84 (180)
                      +.....+.+||+++|++|||||||+|+|.++. ...+.+|.+..+..   +....+.+.+|||||++.+...+..+++++
T Consensus        17 q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   96 (201)
T 3oes_A           17 QGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGV   96 (201)
T ss_dssp             ------CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTC
T ss_pred             CCCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcC
Confidence            34445789999999999999999999999888 44445666644422   223568899999999999999999999999


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCC
Q 030289           85 HGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQG  164 (180)
Q Consensus        85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  164 (180)
                      |++++|||++++++++.+..|+..+.......++|+++|+||+|+.++........   .......+++++++||++|.|
T Consensus        97 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~---~~~~~~~~~~~~~~Sa~~~~~  173 (201)
T 3oes_A           97 HGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEG---KKLAESWGATFMESSARENQL  173 (201)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHH---HHHHHHHTCEEEECCTTCHHH
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHH---HHHHHHhCCeEEEEeCCCCCC
Confidence            99999999999999999999999987765556899999999999875433221110   011123456899999999999


Q ss_pred             hHHHHHHHHHHhhhc
Q 030289          165 LYEGLDWLSSNVSAK  179 (180)
Q Consensus       165 i~~~~~~l~~~~~~~  179 (180)
                      ++++|+++.+.+.+.
T Consensus       174 v~~l~~~l~~~i~~~  188 (201)
T 3oes_A          174 TQGIFTKVIQEIARV  188 (201)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999988754

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=3.3e-33  Score=188.94  Aligned_cols=163  Identities=18%  Similarity=0.267  Sum_probs=131.4

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEE-EEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEE
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE-TVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGL   87 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~   87 (180)
                      .+.+.+||+++|++|||||||+++|+++. ...+.+|++..+. .+...+  ..+.+|||||++++...+..+++++|++
T Consensus         5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   84 (181)
T 2fn4_A            5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF   84 (181)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence            46778999999999999999999999887 4445567765543 344443  6889999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCCh
Q 030289           88 IFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGL  165 (180)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  165 (180)
                      ++|||++++++++.+..|+..+.......+.|+++|+||+|+.+...  .++.. .+    ....+++++++||++|.|+
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~-~~----~~~~~~~~~~~Sa~~~~gv  159 (181)
T 2fn4_A           85 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEAS-AF----GASHHVAYFEASAKLRLNV  159 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHH-HH----HHHTTCEEEECBTTTTBSH
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHH-HH----HHHcCCeEEEecCCCCCCH
Confidence            99999999999999999988886654456889999999999876433  22222 11    1233568999999999999


Q ss_pred             HHHHHHHHHHhhhc
Q 030289          166 YEGLDWLSSNVSAK  179 (180)
Q Consensus       166 ~~~~~~l~~~~~~~  179 (180)
                      +++|+++.+.+.++
T Consensus       160 ~~l~~~l~~~~~~~  173 (181)
T 2fn4_A          160 DEAFEQLVRAVRKY  173 (181)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999988653

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=3.8e-33  Score=186.77  Aligned_cols=160  Identities=21%  Similarity=0.345  Sum_probs=128.4

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE--EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEE
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE--TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGL   87 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   87 (180)
                      +++.+||+++|++|||||||+++|+++.. ..+.+|.+..+.  .+..  ....+.+||+||++.+...+..+++++|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1r2q_A            3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA   82 (170)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence            56789999999999999999999998773 344566665543  3444  357899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCCh
Q 030289           88 IFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGL  165 (180)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  165 (180)
                      ++|+|++++.+++.+..|+..+.... .+++|+++|+||+|+.++..  .++....     +...+++++++||++|.|+
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~g~gi  156 (170)
T 1r2q_A           83 IVVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSY-----ADDNSLLFMETSAKTSMNV  156 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHH-----HHHTTCEEEECCTTTCTTH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccccCHHHHHHH-----HHHcCCeEEEEeCCCCCCH
Confidence            99999999999999999988876543 35799999999999865322  2222221     1234568999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 030289          166 YEGLDWLSSNVSA  178 (180)
Q Consensus       166 ~~~~~~l~~~~~~  178 (180)
                      +++++++.+.+.+
T Consensus       157 ~~l~~~i~~~~~~  169 (170)
T 1r2q_A          157 NEIFMAIAKKLPK  169 (170)
T ss_dssp             HHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988754

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=100.00  E-value=1.1e-33  Score=192.97  Aligned_cols=165  Identities=19%  Similarity=0.325  Sum_probs=124.4

Q ss_pred             hhhcccCccEEEEEcCCCCChHHHHHHhhcCCc-ccccccccee--EEEEEEcC--eEEEEEEcCCCCCCh-hhHHhhcc
Q 030289            9 KMLFARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFN--VETVEYKN--VSFTVWDVGGQDKIR-PLWRHYFQ   82 (180)
Q Consensus         9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~D~~G~~~~~-~~~~~~~~   82 (180)
                      .....++.+||+++|++|||||||+++|+++.+ ..+.+|.+..  ...+...+  +.+.+|||||++.+. ..+..+++
T Consensus        13 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   92 (189)
T 1z06_A           13 PRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYR   92 (189)
T ss_dssp             ------CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHT
T ss_pred             CCCCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhc
Confidence            445567889999999999999999999998773 3455666644  34455544  789999999999887 78899999


Q ss_pred             ccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeecc
Q 030289           83 NTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACAT  160 (180)
Q Consensus        83 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~  160 (180)
                      ++|++++|||++++.+++.+..|+..+.......+.|+++|+||+|+.+...  .++.. .+    ....+++++++||+
T Consensus        93 ~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~-~~----~~~~~~~~~~~Sa~  167 (189)
T 1z06_A           93 NVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQ-KF----ADTHSMPLFETSAK  167 (189)
T ss_dssp             TCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHH-HH----HHHTTCCEEECCSS
T ss_pred             CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHH-HH----HHHcCCEEEEEeCC
Confidence            9999999999999999999999988887654456899999999999965432  22222 11    12234579999999


Q ss_pred             CC---CChHHHHHHHHHHhhh
Q 030289          161 SG---QGLYEGLDWLSSNVSA  178 (180)
Q Consensus       161 ~~---~~i~~~~~~l~~~~~~  178 (180)
                      ++   .|++++|.++.+.+.+
T Consensus       168 ~~~~~~~i~~l~~~l~~~i~~  188 (189)
T 1z06_A          168 NPNDNDHVEAIFMTLAHKLKS  188 (189)
T ss_dssp             SGGGGSCHHHHHHHHC-----
T ss_pred             cCCcccCHHHHHHHHHHHHhh
Confidence            99   9999999999988754

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=100.00  E-value=2.2e-33  Score=189.53  Aligned_cols=168  Identities=17%  Similarity=0.322  Sum_probs=127.4

Q ss_pred             HHHhhhcccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeE--EEEEEcC--eEEEEEEcCCCCCChhhHHhh
Q 030289            6 SRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV--ETVEYKN--VSFTVWDVGGQDKIRPLWRHY   80 (180)
Q Consensus         6 ~~~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~   80 (180)
                      ++-....+++++||+++|++|||||||+++|+++. ...+.+|.+..+  ..+...+  ..+.+|||||++.+...+..+
T Consensus         4 ~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~   83 (179)
T 2y8e_A            4 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY   83 (179)
T ss_dssp             --------CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHH
T ss_pred             ccccccCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHH
Confidence            33334446778999999999999999999999877 444566666444  4444544  689999999999999999999


Q ss_pred             ccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEee
Q 030289           81 FQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAAC  158 (180)
Q Consensus        81 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S  158 (180)
                      ++++|++++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.++..  .++....     +...+++++++|
T Consensus        84 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~S  157 (179)
T 2y8e_A           84 IRDSTVAVVVYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERK-----AKELNVMFIETS  157 (179)
T ss_dssp             HHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHH-----HHHHTCEEEEEB
T ss_pred             hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHH-----HHHcCCeEEEEe
Confidence            999999999999999999999999988876532 35789999999999875432  2222211     123356899999


Q ss_pred             ccCCCChHHHHHHHHHHhhhc
Q 030289          159 ATSGQGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       159 a~~~~~i~~~~~~l~~~~~~~  179 (180)
                      |+++.|++++++++.+.+.++
T Consensus       158 a~~~~~i~~l~~~l~~~~~~~  178 (179)
T 2y8e_A          158 AKAGYNVKQLFRRVAAALPGM  178 (179)
T ss_dssp             TTTTBSHHHHHHHHHHTCC--
T ss_pred             CCCCCCHHHHHHHHHHHHhhc
Confidence            999999999999999987654

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=3.6e-33  Score=188.45  Aligned_cols=162  Identities=17%  Similarity=0.311  Sum_probs=127.7

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccc--eeEEEEEEcC---eEEEEEEcCCCCCChhhHHhhccccCE
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIG--FNVETVEYKN---VSFTVWDVGGQDKIRPLWRHYFQNTHG   86 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~--~~~~~~~~~~---~~~~i~D~~G~~~~~~~~~~~~~~~~~   86 (180)
                      .++.+||+++|++|||||||+++|.++.+ ..+.+|++  +....+...+   ..+.+|||||++.+...+..+++++|+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   82 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG   82 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence            46789999999999999999999998774 44557776  4455666654   899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhcccc--cCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCC
Q 030289           87 LIFVVDSNDRERIGEAKDELHRMLSEDE--LREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSG  162 (180)
Q Consensus        87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  162 (180)
                      +++|||++++++++.+..|+..+.....  ....|+++|+||+|+.+...  .++....     ....+++++++||++|
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~  157 (178)
T 2hxs_A           83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRF-----CQENGFSSHFVSAKTG  157 (178)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHH-----HHHHTCEEEEECTTTC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHH-----HHHcCCcEEEEeCCCC
Confidence            9999999999999988888877754321  12344899999999975322  2222211     1223568999999999


Q ss_pred             CChHHHHHHHHHHhhhc
Q 030289          163 QGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       163 ~~i~~~~~~l~~~~~~~  179 (180)
                      .|++++|+++.+.+.+.
T Consensus       158 ~gi~~l~~~l~~~~~~~  174 (178)
T 2hxs_A          158 DSVFLCFQKVAAEILGI  174 (178)
T ss_dssp             TTHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHhh
Confidence            99999999999988764

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=100.00  E-value=2.4e-33  Score=192.19  Aligned_cols=163  Identities=24%  Similarity=0.304  Sum_probs=128.4

Q ss_pred             hhcccCccEEEEEcCCCCChHHHHHHhhcCCccc-----------cccccceeEEEEE-----EcCeEEEEEEcCCCCCC
Q 030289           10 MLFARKEMRILMVGLDAAGKTTILYKLKLGEIVT-----------TIPTIGFNVETVE-----YKNVSFTVWDVGGQDKI   73 (180)
Q Consensus        10 ~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~-----------~~~t~~~~~~~~~-----~~~~~~~i~D~~G~~~~   73 (180)
                      ...+...+||+++|++|||||||++.+.+.....           +.+|++..+....     ...+.+.+|||||++.+
T Consensus         8 ~~~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~   87 (198)
T 3t1o_A            8 FANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY   87 (198)
T ss_dssp             TTTTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC
T ss_pred             hhccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHH
Confidence            3445678999999999999999998776655333           2345554443322     24568999999999999


Q ss_pred             hhhHHhhccccCEEEEEEECC------ChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCcc
Q 030289           74 RPLWRHYFQNTHGLIFVVDSN------DRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSL  147 (180)
Q Consensus        74 ~~~~~~~~~~~~~~i~v~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~  147 (180)
                      ...+..+++++|++++|||++      +.+++..+..|+..+..  ...++|+++|+||+|+.+....++..+...    
T Consensus        88 ~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~--~~~~~piilv~NK~Dl~~~~~~~~~~~~~~----  161 (198)
T 3t1o_A           88 NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL--TLDDVPIVIQVNKRDLPDALPVEMVRAVVD----  161 (198)
T ss_dssp             SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC--CTTSSCEEEEEECTTSTTCCCHHHHHHHHC----
T ss_pred             HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc--ccCCCCEEEEEEchhcccccCHHHHHHHHH----
Confidence            999999999999999999999      56777788888887732  346899999999999988766666554433    


Q ss_pred             CCcce-EEEEeeccCCCChHHHHHHHHHHhhhc
Q 030289          148 RQRRW-YIQAACATSGQGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       148 ~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~~~  179 (180)
                       ..++ +++++||++|.|++++|+++.+.+.++
T Consensus       162 -~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~  193 (198)
T 3t1o_A          162 -PEGKFPVLEAVATEGKGVFETLKEVSRLVLAR  193 (198)
T ss_dssp             -TTCCSCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred             -hcCCceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence             3455 899999999999999999999988754

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=100.00  E-value=3.5e-33  Score=186.39  Aligned_cols=160  Identities=17%  Similarity=0.242  Sum_probs=126.8

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC-cccccccccee-EEEEEEc--CeEEEEEEcCCCCCChhhHHhhccccCEEEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFN-VETVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF   89 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~-~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   89 (180)
                      ++++||+++|++|||||||+++|.++. ...+.+|.+.. ...+...  ...+.+||+||++.+...+..+++++|++++
T Consensus         1 m~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~   80 (167)
T 1kao_A            1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence            357899999999999999999999877 33445565533 3344444  3569999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChHH
Q 030289           90 VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYE  167 (180)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  167 (180)
                      |+|++++.+++.+..|+..+.......+.|+++|+||+|+.++..  .++...     .....+++++++||++|.|+++
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~gi~~  155 (167)
T 1kao_A           81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRA-----LAEEWGCPFMETSAKSKTMVDE  155 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHH-----HHHHHTSCEEEECTTCHHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHH-----HHHHhCCCEEEecCCCCcCHHH
Confidence            999999999999999988887654446899999999999865332  222111     1122345799999999999999


Q ss_pred             HHHHHHHHhhh
Q 030289          168 GLDWLSSNVSA  178 (180)
Q Consensus       168 ~~~~l~~~~~~  178 (180)
                      +++++.+.+.+
T Consensus       156 l~~~l~~~~~~  166 (167)
T 1kao_A          156 LFAEIVRQMNY  166 (167)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999998764

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=7e-33  Score=187.04  Aligned_cols=161  Identities=18%  Similarity=0.316  Sum_probs=127.8

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeE--EEEEE--cCeEEEEEEcCCCCCChhhHHhhccccCE
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV--ETVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHG   86 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   86 (180)
                      ...+.+||+++|++|||||||+++|+++.. ..+.+|.+..+  ..+..  ....+.+|||||++.+...+..+++++|+
T Consensus        11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   90 (179)
T 1z0f_A           11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG   90 (179)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence            346689999999999999999999998883 44456666443  34444  34689999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCC
Q 030289           87 LIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQG  164 (180)
Q Consensus        87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  164 (180)
                      +++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.++..  .++..+.     +...+++++++||++|.|
T Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~g  164 (179)
T 1z0f_A           91 ALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIILIGNKADLEAQRDVTYEEAKQF-----AEENGLLFLEASAKTGEN  164 (179)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHH-----HHHTTCEEEECCTTTCTT
T ss_pred             EEEEEeCcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHH-----HHHcCCEEEEEeCCCCCC
Confidence            999999999999999999888775432 35789999999999965332  2332221     122456899999999999


Q ss_pred             hHHHHHHHHHHhhh
Q 030289          165 LYEGLDWLSSNVSA  178 (180)
Q Consensus       165 i~~~~~~l~~~~~~  178 (180)
                      ++++|+++.+.+.+
T Consensus       165 i~~l~~~l~~~i~~  178 (179)
T 1z0f_A          165 VEDAFLEAAKKIYQ  178 (179)
T ss_dssp             HHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998865

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.3e-33  Score=191.91  Aligned_cols=160  Identities=19%  Similarity=0.307  Sum_probs=128.0

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeE--EEEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEE
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV--ETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGL   87 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~   87 (180)
                      ..+.+||+++|++|||||||+++|+++. ...+.+|++..+  ..+..++  +.+.+|||||++.+...+..+++++|++
T Consensus        23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~  102 (201)
T 2ew1_A           23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL  102 (201)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred             cccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence            3567999999999999999999999887 345567777554  3455544  6899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCCh
Q 030289           88 IFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGL  165 (180)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  165 (180)
                      ++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+...  .++....     +...++++++|||++|.|+
T Consensus       103 i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~Sa~~g~gv  176 (201)
T 2ew1_A          103 ILTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEEF-----SEAQDMYYLETSAKESDNV  176 (201)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHHH-----HHHHTCCEEECCTTTCTTH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHH-----HHHcCCEEEEEeCCCCCCH
Confidence            99999999999999999988775432 35789999999999875332  2222211     1233467999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 030289          166 YEGLDWLSSNVSA  178 (180)
Q Consensus       166 ~~~~~~l~~~~~~  178 (180)
                      +++|.++.+.+.+
T Consensus       177 ~~l~~~l~~~i~~  189 (201)
T 2ew1_A          177 EKLFLDLACRLIS  189 (201)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988765

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=9.9e-33  Score=186.60  Aligned_cols=162  Identities=19%  Similarity=0.389  Sum_probs=122.1

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhhcCCc--cccccccceeEEE--EEEc--CeEEEEEEcCCCCCChhhHHhhccccC
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIPTIGFNVET--VEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTH   85 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~--~~~~~t~~~~~~~--~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~   85 (180)
                      ..++.+||+++|++|||||||+++|+++.+  ..+.+|++..+..  +...  .+.+.+|||||++.+...+..+++++|
T Consensus         6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d   85 (180)
T 2g6b_A            6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH   85 (180)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred             cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence            456789999999999999999999998874  3556777766543  3444  458999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCC
Q 030289           86 GLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQ  163 (180)
Q Consensus        86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  163 (180)
                      ++++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.++..  .++....     ....+++++++||+++.
T Consensus        86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~  159 (180)
T 2g6b_A           86 ALLLLYDVTNKASFDNIQAWLTEIHEYA-QHDVALMLLGNKVDSAHERVVKREDGEKL-----AKEYGLPFMETSAKTGL  159 (180)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECCSTTSCCCSCHHHHHHH-----HHHHTCCEEECCTTTCT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccCcccccCHHHHHHH-----HHHcCCeEEEEeCCCCC
Confidence            9999999999999999999888776543 25789999999999976432  2222211     12234679999999999


Q ss_pred             ChHHHHHHHHHHhhhc
Q 030289          164 GLYEGLDWLSSNVSAK  179 (180)
Q Consensus       164 ~i~~~~~~l~~~~~~~  179 (180)
                      |++++++++.+.+.++
T Consensus       160 gi~~l~~~l~~~~~~~  175 (180)
T 2g6b_A          160 NVDLAFTAIAKELKRR  175 (180)
T ss_dssp             THHHHHHHHHHHHHC-
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            9999999999988754

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=6.9e-33  Score=190.90  Aligned_cols=161  Identities=20%  Similarity=0.350  Sum_probs=124.8

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCCc-ccccccccee--EEEEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEE
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFN--VETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGL   87 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~   87 (180)
                      ....+||+++|++|||||||+++|.++.+ ..+.+|++..  ...+..++  +.+.+||+||++++...+..+++++|++
T Consensus        26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  105 (201)
T 2hup_A           26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA  105 (201)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred             cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence            35679999999999999999999998874 4556776644  44555554  7899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC--CHhHHHhHhCCCccCCcce-EEEEeeccCCCC
Q 030289           88 IFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM--SVSEVTDKLGLHSLRQRRW-YIQAACATSGQG  164 (180)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~  164 (180)
                      ++|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+..  ..++....     +...++ ++++|||++|.|
T Consensus       106 ilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~~SA~~g~g  179 (201)
T 2hup_A          106 ILAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSL-----AEHYDILCAIETSAKDSSN  179 (201)
T ss_dssp             EEEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHH-----HHHTTCSEEEECBTTTTBS
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHH-----HHHcCCCEEEEEeCCCCCC
Confidence            99999999999999999988876543 3579999999999997532  33333221     122345 899999999999


Q ss_pred             hHHHHHHHHHHhhhc
Q 030289          165 LYEGLDWLSSNVSAK  179 (180)
Q Consensus       165 i~~~~~~l~~~~~~~  179 (180)
                      |+++|+++.+.+.++
T Consensus       180 i~~l~~~l~~~i~~~  194 (201)
T 2hup_A          180 VEEAFLRVATELIMR  194 (201)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999988754

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=7.7e-33  Score=189.13  Aligned_cols=162  Identities=17%  Similarity=0.342  Sum_probs=130.6

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEE---EEEEc-----------CeEEEEEEcCCCCCChhhH
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE---TVEYK-----------NVSFTVWDVGGQDKIRPLW   77 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~---~~~~~-----------~~~~~i~D~~G~~~~~~~~   77 (180)
                      ....+||+++|++|||||||+++|+++. ...+.+|.+..+.   .+...           ...+.+|||||++.+...+
T Consensus         8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~   87 (195)
T 3bc1_A            8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT   87 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred             cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence            4567999999999999999999999877 4455678776654   33333           4689999999999999999


Q ss_pred             HhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC--CHhHHHhHhCCCccCCcceEEE
Q 030289           78 RHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM--SVSEVTDKLGLHSLRQRRWYIQ  155 (180)
Q Consensus        78 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~  155 (180)
                      ..+++++|++++|+|++++.+++.+..|+..+.......++|+++|+||+|+.+..  ..++....     +...+++++
T Consensus        88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~  162 (195)
T 3bc1_A           88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEAREL-----AEKYGIPYF  162 (195)
T ss_dssp             HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHH-----HHHHTCCEE
T ss_pred             HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHH-----HHHcCCCEE
Confidence            99999999999999999999999999998888765444689999999999997532  22222211     112345799


Q ss_pred             EeeccCCCChHHHHHHHHHHhhhc
Q 030289          156 AACATSGQGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       156 ~~Sa~~~~~i~~~~~~l~~~~~~~  179 (180)
                      ++||+++.|++++|+++.+.+.++
T Consensus       163 ~~Sa~~~~~v~~l~~~l~~~~~~~  186 (195)
T 3bc1_A          163 ETSAANGTNISHAIEMLLDLIMKR  186 (195)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999987653

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=100.00  E-value=1.3e-32  Score=186.96  Aligned_cols=163  Identities=20%  Similarity=0.281  Sum_probs=129.3

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE-EEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEE
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE-TVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGL   87 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~   87 (180)
                      .+++.+||+++|++|||||||+++|+++.+ ..+.+|.+..+. .+...+  +.+.+||+||++.+...+..+++.+|++
T Consensus        14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   93 (187)
T 2a9k_A           14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF   93 (187)
T ss_dssp             ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence            356789999999999999999999998874 444566664443 344443  6899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC--CHhHHHhHhCCCccCCcceEEEEeeccCCCCh
Q 030289           88 IFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM--SVSEVTDKLGLHSLRQRRWYIQAACATSGQGL  165 (180)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  165 (180)
                      ++|||++++++++.+..|+..+.......++|+++|+||+|+.+..  ..++....     +...+++++++||+++.|+
T Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi  168 (187)
T 2a9k_A           94 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNR-----AEQWNVNYVETSAKTRANV  168 (187)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHH-----HHHTTCEEEECCTTTCTTH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHH-----HHHcCCeEEEeCCCCCCCH
Confidence            9999999999999999998888765444589999999999986532  23333222     1234568999999999999


Q ss_pred             HHHHHHHHHHhhhc
Q 030289          166 YEGLDWLSSNVSAK  179 (180)
Q Consensus       166 ~~~~~~l~~~~~~~  179 (180)
                      +++|+++.+.+.++
T Consensus       169 ~~l~~~l~~~i~~~  182 (187)
T 2a9k_A          169 DKVFFDLMREIRAR  182 (187)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999988654

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=3.3e-33  Score=189.55  Aligned_cols=159  Identities=18%  Similarity=0.363  Sum_probs=102.2

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeE--EEEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV--ETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGLI   88 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   88 (180)
                      +..+||+++|++|||||||+++|.++.+ ..+.+|++..+  ..+..++  +.+.+|||||++.+...+..+++++|+++
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   85 (183)
T 2fu5_C            6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM   85 (183)
T ss_dssp             SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence            4579999999999999999999998773 45567777544  4455554  78999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChH
Q 030289           89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLY  166 (180)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  166 (180)
                      +|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+...  .++....     +...+++++++||++|.|++
T Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~  159 (183)
T 2fu5_C           86 LVYDITNEKSFDNIRNWIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKL-----ALDYGIKFMETSAKANINVE  159 (183)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEEC--CCSCCCSCHHHHHHH-----HHHHTCEEEECCC---CCHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECccCCccCcCCHHHHHHH-----HHHcCCeEEEEeCCCCCCHH
Confidence            9999999999999999988876532 35789999999999976432  2222211     12345689999999999999


Q ss_pred             HHHHHHHHHhhh
Q 030289          167 EGLDWLSSNVSA  178 (180)
Q Consensus       167 ~~~~~l~~~~~~  178 (180)
                      ++|.++.+.+.+
T Consensus       160 ~l~~~l~~~i~~  171 (183)
T 2fu5_C          160 NAFFTLARDIKA  171 (183)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988765

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.7e-32  Score=186.67  Aligned_cols=163  Identities=21%  Similarity=0.346  Sum_probs=130.8

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeE--EEEEE--cCeEEEEEEcCCCCCChhhHHhhccccCE
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV--ETVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHG   86 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   86 (180)
                      .+.+.+||+++|++|||||||+++|++.. ...+.+|.+..+  ..+..  ..+.+.+|||||++.+...+..+++++|+
T Consensus        11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   90 (195)
T 1x3s_A           11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG   90 (195)
T ss_dssp             TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence            34668999999999999999999999887 445567766544  34444  35789999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC-CHhHHHhHhCCCccCCcceEEEEeeccCCCCh
Q 030289           87 LIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM-SVSEVTDKLGLHSLRQRRWYIQAACATSGQGL  165 (180)
Q Consensus        87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  165 (180)
                      +++|+|++++.++..+..|+..+.......++|+++|+||+|+.+.. ..++....     +...+++++++||+++.|+
T Consensus        91 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi  165 (195)
T 1x3s_A           91 VILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKF-----ARKHSMLFIEASAKTCDGV  165 (195)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHH-----HHHTTCEEEECCTTTCTTH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHH-----HHHcCCEEEEecCCCCCCH
Confidence            99999999999999999999888765444679999999999995432 22222211     1234568999999999999


Q ss_pred             HHHHHHHHHHhhhc
Q 030289          166 YEGLDWLSSNVSAK  179 (180)
Q Consensus       166 ~~~~~~l~~~~~~~  179 (180)
                      +++|+++.+.+.+.
T Consensus       166 ~~l~~~l~~~~~~~  179 (195)
T 1x3s_A          166 QCAFEELVEKIIQT  179 (195)
T ss_dssp             HHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999988653

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=1.1e-32  Score=189.01  Aligned_cols=163  Identities=15%  Similarity=0.172  Sum_probs=123.8

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccc--eeEEEEEEc--CeEEEEEEcCCCCCChh-hHHhhccccC
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEYK--NVSFTVWDVGGQDKIRP-LWRHYFQNTH   85 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~--~~~~~~~~~--~~~~~i~D~~G~~~~~~-~~~~~~~~~~   85 (180)
                      .....+||+++|++|||||||+++|++.. .....++++  .....+..+  .+.+.+|||+|++.+.. ++..+++++|
T Consensus        19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d   98 (195)
T 3cbq_A           19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD   98 (195)
T ss_dssp             ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence            34677999999999999999999997543 222334333  344445554  46789999999988765 7888899999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCC
Q 030289           86 GLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQ  163 (180)
Q Consensus        86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  163 (180)
                      ++++|||++++++++.+..|+..+.......++|+++|+||+|+.+...  .++...     .+...++++++|||++|.
T Consensus        99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-----~a~~~~~~~~e~Sa~~~~  173 (195)
T 3cbq_A           99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRH-----LAGTLSCKHIETSAALHH  173 (195)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHH-----HHHHTTCEEEEEBTTTTB
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHH-----HHHHhCCEEEEEcCCCCC
Confidence            9999999999999999999998876543335799999999999976432  323221     112234689999999999


Q ss_pred             ChHHHHHHHHHHhhhc
Q 030289          164 GLYEGLDWLSSNVSAK  179 (180)
Q Consensus       164 ~i~~~~~~l~~~~~~~  179 (180)
                      |++++|+++++.+.++
T Consensus       174 ~v~~lf~~l~~~i~~~  189 (195)
T 3cbq_A          174 NTRELFEGAVRQIRLR  189 (195)
T ss_dssp             SHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999999988754

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=1.8e-32  Score=185.47  Aligned_cols=163  Identities=18%  Similarity=0.308  Sum_probs=127.7

Q ss_pred             hcccCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeE--EEEEEc--CeEEEEEEcCCCCCChhhHHhhccccC
Q 030289           11 LFARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV--ETVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTH   85 (180)
Q Consensus        11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~   85 (180)
                      ..+.+.+||+++|++|+|||||+++|++... ..+.+|.+..+  ..+...  ...+.+||+||++.+...+..+++++|
T Consensus         7 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   86 (181)
T 2efe_B            7 GNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA   86 (181)
T ss_dssp             ---CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCS
T ss_pred             CCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCC
Confidence            3456789999999999999999999998873 34456666443  344443  568999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCC
Q 030289           86 GLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQ  163 (180)
Q Consensus        86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  163 (180)
                      ++++|+|++++.+++....|+..+.... .++.|+++|+||+|+.+...  .++....     +...+++++++||++|.
T Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~g~  160 (181)
T 2efe_B           87 AAIIVFDVTNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTY-----AQENGLFFMETSAKTAT  160 (181)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHH-----HHHTTCEEEECCSSSCT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHH-----HHHcCCEEEEEECCCCC
Confidence            9999999999999999999988876543 35899999999999975433  3332221     12335689999999999


Q ss_pred             ChHHHHHHHHHHhhhc
Q 030289          164 GLYEGLDWLSSNVSAK  179 (180)
Q Consensus       164 ~i~~~~~~l~~~~~~~  179 (180)
                      |++++|+++.+.+.+.
T Consensus       161 gi~~l~~~l~~~~~~~  176 (181)
T 2efe_B          161 NVKEIFYEIARRLPRV  176 (181)
T ss_dssp             THHHHHHHHHHTCC--
T ss_pred             CHHHHHHHHHHHHHhc
Confidence            9999999999887653

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=1.7e-32  Score=187.85  Aligned_cols=160  Identities=21%  Similarity=0.380  Sum_probs=129.0

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeE--EEEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV--ETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGLI   88 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   88 (180)
                      ...+||+++|++|||||||+++|+++. ...+.++.+...  ..+...+  +.+.+||+||++.+...+..+++.+|+++
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   93 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   93 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence            567999999999999999999999887 445556666444  4555554  78999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHh--HHHhHhCCCccCCcceEEEEeeccCCCChH
Q 030289           89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVS--EVTDKLGLHSLRQRRWYIQAACATSGQGLY  166 (180)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  166 (180)
                      +|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.....  +...     .....+++++++||++|.|++
T Consensus        94 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~g~gv~  167 (196)
T 3tkl_A           94 VVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKE-----FADSLGIPFLETSAKNATNVE  167 (196)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHH-----HHHHTTCCEEEECTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccccCHHHHHH-----HHHHcCCcEEEEeCCCCCCHH
Confidence            9999999999999999988775543 3578999999999997654322  2111     112234579999999999999


Q ss_pred             HHHHHHHHHhhhc
Q 030289          167 EGLDWLSSNVSAK  179 (180)
Q Consensus       167 ~~~~~l~~~~~~~  179 (180)
                      ++|+++.+.+.++
T Consensus       168 ~l~~~l~~~i~~~  180 (196)
T 3tkl_A          168 QSFMTMAAEIKKR  180 (196)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988764

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=9.8e-33  Score=188.29  Aligned_cols=162  Identities=19%  Similarity=0.352  Sum_probs=128.7

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE--EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCE
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE--TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHG   86 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   86 (180)
                      .....+||+++|++|||||||+++|+++.+ ..+.+|.+..+.  .+..  ....+.+||+||++.+...+..+++++|+
T Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   97 (189)
T 2gf9_A           18 GSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMG   97 (189)
T ss_dssp             TCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSE
T ss_pred             ccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCE
Confidence            345679999999999999999999998874 455667765543  3443  35789999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCC
Q 030289           87 LIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQG  164 (180)
Q Consensus        87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  164 (180)
                      +++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+...  .++....     +...+++++++||++|.|
T Consensus        98 ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~g~g  171 (189)
T 2gf9_A           98 FLLMYDIANQESFAAVQDWATQIKTYS-WDNAQVILVGNKCDLEDERVVPAEDGRRL-----ADDLGFEFFEASAKENIN  171 (189)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHH-----HHHHTCEEEECBTTTTBS
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccCCCHHHHHHH-----HHHcCCeEEEEECCCCCC
Confidence            999999999999999999888775432 35789999999999976432  2222211     122346899999999999


Q ss_pred             hHHHHHHHHHHhhhc
Q 030289          165 LYEGLDWLSSNVSAK  179 (180)
Q Consensus       165 i~~~~~~l~~~~~~~  179 (180)
                      ++++|+++.+.+.++
T Consensus       172 i~~l~~~l~~~i~~~  186 (189)
T 2gf9_A          172 VKQVFERLVDVICEK  186 (189)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988653

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=9.6e-33  Score=184.99  Aligned_cols=160  Identities=21%  Similarity=0.324  Sum_probs=121.1

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE--EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEE
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE--TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGL   87 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   87 (180)
                      ..+.+||+++|++|||||||+++|+++.. ..+.+|.+..+.  .+..  ..+.+.+||+||++.+...+..+++++|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1z08_A            3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA   82 (170)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence            35679999999999999999999998874 455677776554  3433  346899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC--CHhHHHhHhCCCccCCcceEEEEeeccCCCCh
Q 030289           88 IFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM--SVSEVTDKLGLHSLRQRRWYIQAACATSGQGL  165 (180)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  165 (180)
                      ++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.++.  ..++....     +...+++++++||++|.|+
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi  156 (170)
T 1z08_A           83 ILVYDITDEDSFQKVKNWVKELRKM-LGNEICLCIVGNKIDLEKERHVSIQEAESY-----AESVGAKHYHTSAKQNKGI  156 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHH-HGGGSEEEEEEECGGGGGGCCSCHHHHHHH-----HHHTTCEEEEEBTTTTBSH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccccCHHHHHHH-----HHHcCCeEEEecCCCCCCH
Confidence            9999999999999999988876543 23578999999999997633  22222221     1233568999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 030289          166 YEGLDWLSSNVSA  178 (180)
Q Consensus       166 ~~~~~~l~~~~~~  178 (180)
                      +++|+++.+.+.+
T Consensus       157 ~~l~~~l~~~~~~  169 (170)
T 1z08_A          157 EELFLDLCKRMIE  169 (170)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999998865

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=9.8e-33  Score=186.62  Aligned_cols=159  Identities=24%  Similarity=0.392  Sum_probs=127.6

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCC-cccccccccee--EEEEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEE
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFN--VETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGL   87 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~   87 (180)
                      ..+.+||+++|++|||||||+++|.++. ...+.++.+..  ...+...+  +.+.+||+||++.+...+..+++++|++
T Consensus         6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   85 (181)
T 3tw8_B            6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV   85 (181)
T ss_dssp             CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence            4678999999999999999999999887 44555666644  44555555  7899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCH--hHHHhHhCCCccCCcceEEEEeeccCCCCh
Q 030289           88 IFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSV--SEVTDKLGLHSLRQRRWYIQAACATSGQGL  165 (180)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  165 (180)
                      ++|+|++++.+++.+..|+..+...  .++.|+++|+||+|+.+....  .+...     .....+++++++||++|.|+
T Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~gi  158 (181)
T 3tw8_B           86 IVVYDVTSAESFVNVKRWLHEINQN--CDDVCRILVGNKNDDPERKVVETEDAYK-----FAGQMGIQLFETSAKENVNV  158 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHH--CTTSEEEEEEECTTCGGGCCSCHHHHHH-----HHHHHTCCEEECBTTTTBSH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECCCCchhcccCHHHHHH-----HHHHcCCeEEEEECCCCCCH
Confidence            9999999999999999998888654  357999999999998764322  22111     11223457999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 030289          166 YEGLDWLSSNVSA  178 (180)
Q Consensus       166 ~~~~~~l~~~~~~  178 (180)
                      +++|+++.+.+.+
T Consensus       159 ~~l~~~l~~~~~~  171 (181)
T 3tw8_B          159 EEMFNCITELVLR  171 (181)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998765

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.2e-32  Score=187.11  Aligned_cols=161  Identities=19%  Similarity=0.320  Sum_probs=129.3

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCCcc-ccccccceeEEE--EEE--cCeEEEEEEcCCCCCChhhHHhhccccCEE
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGL   87 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   87 (180)
                      ..+.+||+|+|++|||||||+++|++..+. .+.+|.+..+..  +..  ....+.+|||||++.+...+..+++++|++
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v  101 (193)
T 2oil_A           22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA  101 (193)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence            456799999999999999999999988743 455677755543  333  457899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC--CHhHHHhHhCCCccCCcceEEEEeeccCCCCh
Q 030289           88 IFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM--SVSEVTDKLGLHSLRQRRWYIQAACATSGQGL  165 (180)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  165 (180)
                      ++|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+..  ..++....     +...+++++++||++|.|+
T Consensus       102 i~v~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi  175 (193)
T 2oil_A          102 LLVFDLTKHQTYAVVERWLKELYDHA-EATIVVMLVGNKSDLSQAREVPTEEARMF-----AENNGLLFLETSALDSTNV  175 (193)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHTTS-CTTCEEEEEEECGGGGGGCCSCHHHHHHH-----HHHTTCEEEEECTTTCTTH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECCCcccccccCHHHHHHH-----HHHcCCEEEEEeCCCCCCH
Confidence            99999999999999999988876542 3578999999999997533  22222221     1234568999999999999


Q ss_pred             HHHHHHHHHHhhhc
Q 030289          166 YEGLDWLSSNVSAK  179 (180)
Q Consensus       166 ~~~~~~l~~~~~~~  179 (180)
                      +++|+++.+.+.++
T Consensus       176 ~~l~~~l~~~i~~~  189 (193)
T 2oil_A          176 ELAFETVLKEIFAK  189 (193)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999987653

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=4.2e-33  Score=190.47  Aligned_cols=164  Identities=19%  Similarity=0.307  Sum_probs=126.9

Q ss_pred             hhcccCccEEEEEcCCCCChHHHHHHhhcCCc-ccccccccee--EEEEEEcC--eEEEEEEcCCCCCChhhHHhhcccc
Q 030289           10 MLFARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFN--VETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNT   84 (180)
Q Consensus        10 ~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~   84 (180)
                      .......+||+++|++|||||||+++|+++.+ ..+.+|.+..  ...+...+  +.+.+|||||++.+...+..+++++
T Consensus        15 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   94 (191)
T 2a5j_A           15 VPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGA   94 (191)
T ss_dssp             CCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTC
T ss_pred             ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccC
Confidence            33446789999999999999999999998874 3445565543  34555544  6899999999999998899999999


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCC
Q 030289           85 HGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSG  162 (180)
Q Consensus        85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  162 (180)
                      |++++|+|++++++++.+..|+..+.... ..+.|+++|+||+|+.+...  .++....     +...+++++++||+++
T Consensus        95 d~ii~v~d~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~Sa~~~  168 (191)
T 2a5j_A           95 AGALLVYDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEAF-----AREHGLIFMETSAKTA  168 (191)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHH-----HHHHTCEEEEECTTTC
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCCccccCHHHHHHH-----HHHcCCEEEEEeCCCC
Confidence            99999999999999999999988876532 35799999999999965322  2222211     1234568999999999


Q ss_pred             CChHHHHHHHHHHhhhc
Q 030289          163 QGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       163 ~~i~~~~~~l~~~~~~~  179 (180)
                      .|++++|+++.+.+.++
T Consensus       169 ~gi~~l~~~l~~~i~~~  185 (191)
T 2a5j_A          169 CNVEEAFINTAKEIYRK  185 (191)
T ss_dssp             TTHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            99999999999887653

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=100.00  E-value=1.1e-32  Score=184.56  Aligned_cols=159  Identities=15%  Similarity=0.167  Sum_probs=116.3

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCCcc-c--cccccceeEEEEEEc--CeEEEEEEcCCCCCChh-hHHhhccccCEEEE
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYK--NVSFTVWDVGGQDKIRP-LWRHYFQNTHGLIF   89 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~~~-~--~~~t~~~~~~~~~~~--~~~~~i~D~~G~~~~~~-~~~~~~~~~~~~i~   89 (180)
                      .+||+++|++|||||||+++|.+.... .  ..++.+.....+...  .+.+.+||+||++.+.. .+..+++++|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            479999999999999999999866522 2  223444444555554  46788999999998875 67778899999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChHH
Q 030289           90 VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYE  167 (180)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  167 (180)
                      |||++++++++.+..|+..+.......++|+++|+||+|+.+...  .++...     .+...+++++++||++|.|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~~v~~  156 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRH-----LAGTLSCKHIETSAALHHNTRE  156 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHH-----HHHHTTCEEEECBTTTTBSHHH
T ss_pred             EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHH-----HHHHcCCcEEEecCccCCCHHH
Confidence            999999999999999999887665445899999999999874332  222221     1223356899999999999999


Q ss_pred             HHHHHHHHhhhc
Q 030289          168 GLDWLSSNVSAK  179 (180)
Q Consensus       168 ~~~~l~~~~~~~  179 (180)
                      +|+++.+.+..+
T Consensus       157 l~~~l~~~i~~~  168 (169)
T 3q85_A          157 LFEGAVRQIRLR  168 (169)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhc
Confidence            999999998765

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=100.00  E-value=3e-32  Score=185.52  Aligned_cols=161  Identities=18%  Similarity=0.297  Sum_probs=124.4

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeE-EEEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEEEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV-ETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGLIF   89 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~-~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   89 (180)
                      .+.+||+++|++|||||||+|+|.++.. ..+.+|..... ..+...+  +.+.+|||||++.+...+..+++.+|++++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   81 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   81 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence            3579999999999999999999998773 34445554332 3344443  568889999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHH
Q 030289           90 VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGL  169 (180)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  169 (180)
                      |||++++.+++.+..|+..+.......+.|+++|+||+|+.+.....+....+.    ...+++++++||++|.|++++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~gi~~l~  157 (189)
T 4dsu_A           82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLA----RSYGIPFIETSAKTRQGVDDAF  157 (189)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHH----HHHTCCEEECCTTTCTTHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHH----HHcCCeEEEEeCCCCCCHHHHH
Confidence            999999999999999988887755556899999999999975432222222211    2234579999999999999999


Q ss_pred             HHHHHHhhh
Q 030289          170 DWLSSNVSA  178 (180)
Q Consensus       170 ~~l~~~~~~  178 (180)
                      +++.+.+.+
T Consensus       158 ~~l~~~~~~  166 (189)
T 4dsu_A          158 YTLVREIRK  166 (189)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998764

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.5e-32  Score=190.21  Aligned_cols=162  Identities=15%  Similarity=0.151  Sum_probs=121.0

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhhcCC--ccccccccce--eEEEEEEcC--eEEEEEEcCCCCC-ChhhHHhhcccc
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIPTIGF--NVETVEYKN--VSFTVWDVGGQDK-IRPLWRHYFQNT   84 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~--~~~~~~t~~~--~~~~~~~~~--~~~~i~D~~G~~~-~~~~~~~~~~~~   84 (180)
                      .....+||+++|++|||||||+|+|.+..  +.+..++++.  ....+.+++  +.+.+|||+|+.. +..+...+++.+
T Consensus        33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a  112 (211)
T 2g3y_A           33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG  112 (211)
T ss_dssp             --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence            34567999999999999999999999644  3444444543  334455544  5678999999886 456677788899


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCC
Q 030289           85 HGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSG  162 (180)
Q Consensus        85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  162 (180)
                      +++++|||++++++++.+..|+..+.......++|+++|+||+|+.+...  .++.. .    .+...++++++|||++|
T Consensus       113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~-~----~a~~~~~~~~e~SAk~g  187 (211)
T 2g3y_A          113 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGR-A----CAVVFDCKFIETSAAVQ  187 (211)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHH-H----HHHHHTCEEEECBTTTT
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHH-H----HHHHcCCEEEEEeCCCC
Confidence            99999999999999999999988776543345799999999999975332  22211 1    11233568999999999


Q ss_pred             CChHHHHHHHHHHhhh
Q 030289          163 QGLYEGLDWLSSNVSA  178 (180)
Q Consensus       163 ~~i~~~~~~l~~~~~~  178 (180)
                      .||+++|+++.+.+..
T Consensus       188 ~~v~elf~~l~~~i~~  203 (211)
T 2g3y_A          188 HNVKELFEGIVRQVRL  203 (211)
T ss_dssp             BSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            9999999999998754

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=3.9e-32  Score=187.20  Aligned_cols=159  Identities=18%  Similarity=0.354  Sum_probs=127.5

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE--EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE--TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLI   88 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   88 (180)
                      ...+||+|+|++|||||||+++|++..+ ..+.+|.+..+.  .+..  ....+.+|||||++.+...+..+++++|+++
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   85 (203)
T 1zbd_A            6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI   85 (203)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence            4579999999999999999999998874 455677775543  3443  3578999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChH
Q 030289           89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLY  166 (180)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  166 (180)
                      +|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+...  .++....     +...+++++++||++|.|++
T Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~  159 (203)
T 1zbd_A           86 LMYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGRQL-----ADHLGFEFFEASAKDNINVK  159 (203)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHS-CSSCEEEEEEECTTCTTSCCSCHHHHHHH-----HHHHTCEEEECBTTTTBSSH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCcccccCHHHHHHH-----HHHCCCeEEEEECCCCCCHH
Confidence            9999999999999999988875432 35789999999999976432  2222111     12234689999999999999


Q ss_pred             HHHHHHHHHhhh
Q 030289          167 EGLDWLSSNVSA  178 (180)
Q Consensus       167 ~~~~~l~~~~~~  178 (180)
                      ++|+++.+.+.+
T Consensus       160 ~l~~~l~~~i~~  171 (203)
T 1zbd_A          160 QTFERLVDVICE  171 (203)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988764

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.6e-32  Score=187.75  Aligned_cols=162  Identities=18%  Similarity=0.302  Sum_probs=129.3

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEEEEEE----cCeEEEEEEcCCCCCChhhHHhhccccCE
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWRHYFQNTHG   86 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   86 (180)
                      ...+.+||+++|++|+|||||+++|+++.+ ..+.+|.+..+.....    ....+.+|||||++.+...+..+++++|+
T Consensus        19 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   98 (192)
T 2fg5_A           19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAA   98 (192)
T ss_dssp             --CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred             ccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCE
Confidence            346789999999999999999999998884 4566777765544333    45789999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC--CHhHHHhHhCCCccCCcceEEEEeeccCCCC
Q 030289           87 LIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM--SVSEVTDKLGLHSLRQRRWYIQAACATSGQG  164 (180)
Q Consensus        87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  164 (180)
                      +++|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+..  ..++..+.     +...+++++++||+++.|
T Consensus        99 iilV~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~Sa~~~~g  172 (192)
T 2fg5_A           99 AVIVYDITKQDSFYTLKKWVKELKEHG-PENIVMAIAGNKCDLSDIREVPLKDAKEY-----AESIGAIVVETSAKNAIN  172 (192)
T ss_dssp             EEEEEETTCTHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHH-----HHTTTCEEEECBTTTTBS
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHH-----HHHcCCEEEEEeCCCCcC
Confidence            999999999999999999988875532 3579999999999997532  23333322     123457899999999999


Q ss_pred             hHHHHHHHHHHhhhc
Q 030289          165 LYEGLDWLSSNVSAK  179 (180)
Q Consensus       165 i~~~~~~l~~~~~~~  179 (180)
                      ++++++++.+.+.+.
T Consensus       173 i~~l~~~l~~~i~~~  187 (192)
T 2fg5_A          173 IEELFQGISRQIPPL  187 (192)
T ss_dssp             HHHHHHHHHHTCC--
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999987653

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.7e-32  Score=188.17  Aligned_cols=164  Identities=18%  Similarity=0.220  Sum_probs=127.3

Q ss_pred             hhcccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEE-EEEEc--CeEEEEEEcCCCCCChhhHHhhccccC
Q 030289           10 MLFARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE-TVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTH   85 (180)
Q Consensus        10 ~~~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~   85 (180)
                      +..+.+.+||+++|++|||||||+++|+++. ...+.+|.+..+. .+...  .+.+.+||+||++. ...+..+++++|
T Consensus        22 ~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d  100 (196)
T 2atv_A           22 SMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGE  100 (196)
T ss_dssp             -----CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCS
T ss_pred             ccCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCC
Confidence            3345778999999999999999999999887 3445667765543 24443  47899999999988 778899999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCC
Q 030289           86 GLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQ  163 (180)
Q Consensus        86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  163 (180)
                      ++++|||++++++++.+..|+..+.......++|+++|+||+|+.+...  .++....     +...+++++++||++|.
T Consensus       101 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~Sa~~g~  175 (196)
T 2atv_A          101 GFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKL-----ATELACAFYECSACTGE  175 (196)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHH-----HHHHTSEEEECCTTTCT
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHH-----HHHhCCeEEEECCCcCC
Confidence            9999999999999999998888876654446899999999999876322  2222211     12235689999999999


Q ss_pred             -ChHHHHHHHHHHhhhc
Q 030289          164 -GLYEGLDWLSSNVSAK  179 (180)
Q Consensus       164 -~i~~~~~~l~~~~~~~  179 (180)
                       |++++|+++.+.+.++
T Consensus       176 ~gi~~l~~~l~~~i~~~  192 (196)
T 2atv_A          176 GNITEIFYELCREVRRR  192 (196)
T ss_dssp             TCHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhh
Confidence             9999999999988754

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=4.3e-33  Score=186.30  Aligned_cols=159  Identities=18%  Similarity=0.331  Sum_probs=126.9

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeE--EEEEEc--CeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV--ETVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLI   88 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   88 (180)
                      ++.+||+++|++|||||||+++|.++. ...+.+|.+..+  ..+...  ...+.+|||||++.+...+..+++++|+++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence            468999999999999999999999887 345567766444  344443  468999999999999888999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC--CHhHHHhHhCCCccCCcceEEEEeeccCCCChH
Q 030289           89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM--SVSEVTDKLGLHSLRQRRWYIQAACATSGQGLY  166 (180)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  166 (180)
                      +|+|++++.+++.+..|+..+....  .+.|+++|+||+|+.++.  ..++....     ....+++++++||+++.|++
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~  155 (168)
T 1z2a_A           83 LVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGL-----AKRLKLRFYRTSVKEDLNVS  155 (168)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHH-----HHHHTCEEEECBTTTTBSSH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHH-----HHHcCCeEEEEecCCCCCHH
Confidence            9999999999999999988876543  578999999999987533  22222211     12335689999999999999


Q ss_pred             HHHHHHHHHhhhc
Q 030289          167 EGLDWLSSNVSAK  179 (180)
Q Consensus       167 ~~~~~l~~~~~~~  179 (180)
                      ++++++.+.+.++
T Consensus       156 ~l~~~l~~~~~~~  168 (168)
T 1z2a_A          156 EVFKYLAEKHLQK  168 (168)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHhhC
Confidence            9999999988753

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=1.1e-32  Score=189.52  Aligned_cols=165  Identities=19%  Similarity=0.332  Sum_probs=118.0

Q ss_pred             hhhcccCccEEEEEcCCCCChHHHHHHhhcCCc-ccccccccee--EEEEEEc--CeEEEEEEcCCCCCChhhHHhhccc
Q 030289            9 KMLFARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFN--VETVEYK--NVSFTVWDVGGQDKIRPLWRHYFQN   83 (180)
Q Consensus         9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~--~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~   83 (180)
                      ++...++.+||+++|++|||||||+++|+++.+ ..+.+|.+..  ...+..+  ...+.+|||||++.+...+..++++
T Consensus        21 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~  100 (199)
T 2p5s_A           21 KSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRK  100 (199)
T ss_dssp             -------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHH
T ss_pred             CCcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhh
Confidence            556667899999999999999999999998873 4455666643  3445544  4679999999999999999999999


Q ss_pred             cCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC------CC--CHhHHHhHhCCCccCCcceEEE
Q 030289           84 THGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN------AM--SVSEVTDKLGLHSLRQRRWYIQ  155 (180)
Q Consensus        84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~------~~--~~~~~~~~~~~~~~~~~~~~~~  155 (180)
                      +|++++|||++++.+++.+..|+..+... ...+.|+++|+||+|+.+      ..  ..++.. .    .+...+++++
T Consensus       101 ~d~iilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~-~----~~~~~~~~~~  174 (199)
T 2p5s_A          101 ADGVLLLYDVTCEKSFLNIREWVDMIEDA-AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGE-K----LAMTYGALFC  174 (199)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHH-C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHH-H----HHHHHTCEEE
T ss_pred             CCEEEEEEECCChHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccccccccCHHHHH-H----HHHHcCCeEE
Confidence            99999999999999999998888776443 235789999999999852      11  111111 1    1223456899


Q ss_pred             EeeccCCCChHHHHHHHHHHhhhc
Q 030289          156 AACATSGQGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       156 ~~Sa~~~~~i~~~~~~l~~~~~~~  179 (180)
                      ++||++|.|++++|.++.+.+.++
T Consensus       175 ~~SA~~g~gv~el~~~l~~~i~~~  198 (199)
T 2p5s_A          175 ETSAKDGSNIVEAVLHLAREVKKR  198 (199)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHTC-
T ss_pred             EeeCCCCCCHHHHHHHHHHHHHhh
Confidence            999999999999999999998764

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=1.7e-32  Score=186.48  Aligned_cols=159  Identities=19%  Similarity=0.336  Sum_probs=127.6

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeE--EEEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV--ETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGLI   88 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   88 (180)
                      .+.+||+++|++|||||||+++|+++.+ ..+.+|.+..+  ..+...+  +.+.+||+||++.+...+..+++++|+++
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   87 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL   87 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence            5679999999999999999999998873 44556666443  4455544  78999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChH
Q 030289           89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLY  166 (180)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  166 (180)
                      +|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.++..  ..+....     +...+++++++||++|.|++
T Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~  161 (186)
T 2bme_A           88 LVYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRF-----AQENELMFLETSALTGENVE  161 (186)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHH-----HHHTTCEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHH-----HHHcCCEEEEecCCCCCCHH
Confidence            9999999999999999987765432 35789999999999965322  2222211     22345689999999999999


Q ss_pred             HHHHHHHHHhhh
Q 030289          167 EGLDWLSSNVSA  178 (180)
Q Consensus       167 ~~~~~l~~~~~~  178 (180)
                      ++|+++.+.+.+
T Consensus       162 ~l~~~l~~~~~~  173 (186)
T 2bme_A          162 EAFVQCARKILN  173 (186)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988765

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=100.00  E-value=2.3e-32  Score=183.05  Aligned_cols=159  Identities=20%  Similarity=0.331  Sum_probs=127.4

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEE--EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE--TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLI   88 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   88 (180)
                      .+.+||+++|++|+|||||+|+|.+.. ...+.+|.+..+.  .+..  ....+.+|||||++.+...+..+++++|+++
T Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i   83 (170)
T 1z0j_A            4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   83 (170)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence            467999999999999999999999888 4455677775543  3444  3478999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChH
Q 030289           89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLY  166 (180)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  166 (180)
                      +|+|++++.+++.+..|+..+... ..+..|+++|+||+|+.+...  .++.. .+    ....+++++++||++|.|++
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~~-~~----~~~~~~~~~~~Sa~~~~~i~  157 (170)
T 1z0j_A           84 IVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAK-DY----ADSIHAIFVETSAKNAININ  157 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHH-HH----HHHTTCEEEECBTTTTBSHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCccccccccCHHHHH-HH----HHHcCCEEEEEeCCCCcCHH
Confidence            999999999999998888877553 346799999999999976432  22222 11    12335689999999999999


Q ss_pred             HHHHHHHHHhhh
Q 030289          167 EGLDWLSSNVSA  178 (180)
Q Consensus       167 ~~~~~l~~~~~~  178 (180)
                      ++++++.+.+.+
T Consensus       158 ~l~~~i~~~i~~  169 (170)
T 1z0j_A          158 ELFIEISRRIPS  169 (170)
T ss_dssp             HHHHHHHHHCCC
T ss_pred             HHHHHHHHHHhc
Confidence            999999988753

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=4.1e-32  Score=183.10  Aligned_cols=163  Identities=15%  Similarity=0.296  Sum_probs=127.0

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeE--EEEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEE
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV--ETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGL   87 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~   87 (180)
                      ..+.+||+++|++|||||||+++|+++. ...+.+|.+..+  ..+...+  +.+.+||+||++.+...+..+++++|++
T Consensus         4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   83 (177)
T 1wms_A            4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   83 (177)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence            4568999999999999999999999887 445567777554  3444444  6899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhccc---ccCCCeEEEEEecCCCCCC-CCHhHHHhHhCCCccCCcceEEEEeeccCCC
Q 030289           88 IFVVDSNDRERIGEAKDELHRMLSED---ELREAVLLVFANKQDLPNA-MSVSEVTDKLGLHSLRQRRWYIQAACATSGQ  163 (180)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~iiiv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  163 (180)
                      ++|||++++.+++.+..|+..+....   ...+.|+++|+||+|+.+. ...++......    ...+++++++||++|.
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~  159 (177)
T 1wms_A           84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCR----DNGDYPYFETSAKDAT  159 (177)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHH----HTTCCCEEECCTTTCT
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHH----hcCCceEEEEeCCCCC
Confidence            99999999999999888887775432   1267899999999999742 23333332211    1234579999999999


Q ss_pred             ChHHHHHHHHHHhhhc
Q 030289          164 GLYEGLDWLSSNVSAK  179 (180)
Q Consensus       164 ~i~~~~~~l~~~~~~~  179 (180)
                      |++++|+++.+.+.++
T Consensus       160 gi~~l~~~l~~~~~~~  175 (177)
T 1wms_A          160 NVAAAFEEAVRRVLAT  175 (177)
T ss_dssp             THHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHhh
Confidence            9999999999998764

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=100.00  E-value=1.1e-31  Score=178.89  Aligned_cols=160  Identities=17%  Similarity=0.278  Sum_probs=125.9

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeE-EEEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV-ETVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV   90 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~-~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (180)
                      +.+||+++|++|||||||+++|.++.. ..+.+|.+..+ ..+..  ..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            468999999999999999999998773 34455655433 33444  346789999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC-HhHHHhHhCCCccCCcceEEEEeeccCCCChHHHH
Q 030289           91 VDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS-VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGL  169 (180)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  169 (180)
                      +|++++.+++.+..|+..+.......+.|+++|+||+|+.+... .++.. .+    ....+++++++||++|.|+++++
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~-~~----~~~~~~~~~~~Sa~~~~gi~~l~  156 (166)
T 2ce2_X           82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQ-DL----ARSYGIPYIETSAKTRQGVEDAF  156 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHH-HH----HHHHTCCEEEECTTTCTTHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHH-HH----HHHcCCeEEEecCCCCCCHHHHH
Confidence            99999999999998988876554345799999999999876322 22222 11    12234579999999999999999


Q ss_pred             HHHHHHhhhc
Q 030289          170 DWLSSNVSAK  179 (180)
Q Consensus       170 ~~l~~~~~~~  179 (180)
                      +++.+.+.++
T Consensus       157 ~~l~~~~~~~  166 (166)
T 2ce2_X          157 YTLVREIRQH  166 (166)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHhC
Confidence            9999988653

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=1.8e-33  Score=195.62  Aligned_cols=162  Identities=18%  Similarity=0.180  Sum_probs=125.5

Q ss_pred             hcccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEE---EEEcCeEEEEEEcCCCCCChhhHHhhccccCE
Q 030289           11 LFARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVET---VEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHG   86 (180)
Q Consensus        11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   86 (180)
                      ...+..+||+++|++|||||||+++|+++. ...+.+|++..+..   +....+.+.+|||+|++.+...+..+++++|+
T Consensus        22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  101 (214)
T 3q3j_B           22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA  101 (214)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence            345678999999999999999999999888 44556777765542   22255789999999999999999999999999


Q ss_pred             EEEEEECCChhhHHH-HHHHHHHHhcccccCCCeEEEEEecCCCCCC--------------CCHhHHHhHhCCCccCCcc
Q 030289           87 LIFVVDSNDRERIGE-AKDELHRMLSEDELREAVLLVFANKQDLPNA--------------MSVSEVTDKLGLHSLRQRR  151 (180)
Q Consensus        87 ~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~  151 (180)
                      +++|||++++++++. +..|+..+...  .++.|+++|+||+|+.++              ...++..     ..+...+
T Consensus       102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~~  174 (214)
T 3q3j_B          102 VLLCFDISRPETVDSALKKWRTEILDY--CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGC-----AIAKQLG  174 (214)
T ss_dssp             EEEEEETTCTHHHHHHHTHHHHHHHHH--CTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHH-----HHHHHHT
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHH-----HHHHHcC
Confidence            999999999999998 67888777554  358999999999999753              2222211     1122345


Q ss_pred             e-EEEEeeccCCCC-hHHHHHHHHHHhhhc
Q 030289          152 W-YIQAACATSGQG-LYEGLDWLSSNVSAK  179 (180)
Q Consensus       152 ~-~~~~~Sa~~~~~-i~~~~~~l~~~~~~~  179 (180)
                      + ++++|||++|.| |+++|+++.+.+.++
T Consensus       175 ~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~  204 (214)
T 3q3j_B          175 AEIYLEGSAFTSEKSIHSIFRTASMLCLNK  204 (214)
T ss_dssp             CSEEEECCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred             CCEEEEeccCCCcccHHHHHHHHHHHHhcc
Confidence            6 899999999998 999999999988654

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=1.1e-32  Score=187.93  Aligned_cols=162  Identities=15%  Similarity=0.156  Sum_probs=122.2

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEE-EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEE
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE-TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGL   87 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   87 (180)
                      .+.+.+||+++|++|||||||+++|+++. ...+.+|++..+. .+..  ..+.+.+|||||++.+... ..+++++|++
T Consensus        17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~   95 (187)
T 3c5c_A           17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF   95 (187)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred             CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence            34678999999999999999999999888 4455677775542 2333  4578899999999988775 5689999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhcccc--cCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeec-cCC
Q 030289           88 IFVVDSNDRERIGEAKDELHRMLSEDE--LREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACA-TSG  162 (180)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~  162 (180)
                      ++|||++++++++.+..|+..+.....  ..+.|+++|+||+|+.+...  .++....     +...++++++||| ++|
T Consensus        96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~e~Sa~~~g  170 (187)
T 3c5c_A           96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVAL-----AGRFGCLFFEVSACLDF  170 (187)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHH-----HHHHTCEEEECCSSSCS
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHH-----HHHcCCcEEEEeecCcc
Confidence            999999999999999999888765421  25789999999999865332  2222211     1233568999999 899


Q ss_pred             CChHHHHHHHHHHhhhc
Q 030289          163 QGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       163 ~~i~~~~~~l~~~~~~~  179 (180)
                      .||+++|+++.+.+.++
T Consensus       171 ~gv~~lf~~l~~~i~~~  187 (187)
T 3c5c_A          171 EHVQHVFHEAVREARRE  187 (187)
T ss_dssp             HHHHHHHHHHHHHHHC-
T ss_pred             ccHHHHHHHHHHHHhhC
Confidence            99999999999988653

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=3.6e-32  Score=187.84  Aligned_cols=160  Identities=21%  Similarity=0.370  Sum_probs=128.4

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeE--EEEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV--ETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGLI   88 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   88 (180)
                      ...+||+|+|++|||||||+++|.++. ...+.+|.+..+  ..+...+  +.+.+|||||++.+...+..+++++|+++
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi   85 (206)
T 2bcg_Y            6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII   85 (206)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence            557999999999999999999999887 345566666444  4455543  68999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChH
Q 030289           89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLY  166 (180)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  166 (180)
                      +|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+...  .++....     +...+++++++||++|.|++
T Consensus        86 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~g~gi~  159 (206)
T 2bcg_Y           86 IVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEF-----ADANKMPFLETSALDSTNVE  159 (206)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHH-----HHHTTCCEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHH-----HHHcCCeEEEEeCCCCCCHH
Confidence            9999999999999999988775442 35789999999999976432  2222211     12234679999999999999


Q ss_pred             HHHHHHHHHhhhc
Q 030289          167 EGLDWLSSNVSAK  179 (180)
Q Consensus       167 ~~~~~l~~~~~~~  179 (180)
                      ++|.++.+.+.++
T Consensus       160 ~l~~~l~~~i~~~  172 (206)
T 2bcg_Y          160 DAFLTMARQIKES  172 (206)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999987653

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.8e-33  Score=190.67  Aligned_cols=161  Identities=20%  Similarity=0.356  Sum_probs=128.9

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeE--EEEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEE
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV--ETVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGL   87 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   87 (180)
                      ....+||+|+|++|||||||+++|+++. ...+.+|.+..+  ..+..  ..+.+.+||+||++.+...+..+++++|++
T Consensus        20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   99 (191)
T 3dz8_A           20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGF   99 (191)
T ss_dssp             EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEE
T ss_pred             cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEE
Confidence            4678999999999999999999999877 344456665443  33333  678999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCCh
Q 030289           88 IFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGL  165 (180)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  165 (180)
                      ++|||++++.+++.+..|+..+... ...+.|+++|+||+|+.+...  .++...     .....+++++++||++|.|+
T Consensus       100 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~gi  173 (191)
T 3dz8_A          100 ILMYDITNEESFNAVQDWATQIKTY-SWDNAQVILVGNKCDMEEERVVPTEKGQL-----LAEQLGFDFFEASAKENISV  173 (191)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHH-----HHHHHTCEEEECBTTTTBSH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHH-----HHHHcCCeEEEEECCCCCCH
Confidence            9999999999999999998887553 235899999999999865432  222211     11233568999999999999


Q ss_pred             HHHHHHHHHHhhhc
Q 030289          166 YEGLDWLSSNVSAK  179 (180)
Q Consensus       166 ~~~~~~l~~~~~~~  179 (180)
                      +++|+++.+.+.++
T Consensus       174 ~~l~~~l~~~i~~~  187 (191)
T 3dz8_A          174 RQAFERLVDAICDK  187 (191)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999988764

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=100.00  E-value=8.2e-33  Score=192.49  Aligned_cols=161  Identities=20%  Similarity=0.387  Sum_probs=128.3

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE--EEEEc------------CeEEEEEEcCCCCCChhhH
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE--TVEYK------------NVSFTVWDVGGQDKIRPLW   77 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~--~~~~~------------~~~~~i~D~~G~~~~~~~~   77 (180)
                      ..+.+||+|+|++|||||||+++|+++.+ ..+.+|++..+.  .+.+.            ...+.+|||||++.+...+
T Consensus        22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~  101 (217)
T 2f7s_A           22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT  101 (217)
T ss_dssp             CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred             cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence            36679999999999999999999998773 445567665443  33332            5789999999999999999


Q ss_pred             HhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEE
Q 030289           78 RHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQ  155 (180)
Q Consensus        78 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~  155 (180)
                      ..+++++|++++|||++++.+++.+..|+..+.......++|+++|+||+|+.+...  .++....     +...+++++
T Consensus       102 ~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~  176 (217)
T 2f7s_A          102 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQAREL-----ADKYGIPYF  176 (217)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHH-----HHHTTCCEE
T ss_pred             HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHH-----HHHCCCcEE
Confidence            999999999999999999999999999988776544336899999999999976332  2222211     122345799


Q ss_pred             EeeccCCCChHHHHHHHHHHhhh
Q 030289          156 AACATSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       156 ~~Sa~~~~~i~~~~~~l~~~~~~  178 (180)
                      +|||+++.|++++|+++.+.+.+
T Consensus       177 ~~Sa~~g~gi~~l~~~l~~~i~~  199 (217)
T 2f7s_A          177 ETSAATGQNVEKAVETLLDLIMK  199 (217)
T ss_dssp             EEBTTTTBTHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999998765

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=8e-33  Score=189.46  Aligned_cols=160  Identities=21%  Similarity=0.308  Sum_probs=125.1

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEEE-EEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET-VEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLI   88 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   88 (180)
                      .++.+||+++|++|||||||+++|+++.+ ..+.+|++..+.. +..  ..+.+.+|||||++.+...+..+++++|+++
T Consensus        20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   99 (194)
T 3reg_A           20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL   99 (194)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence            46679999999999999999999998884 4556777755543 333  3466799999999999999999999999999


Q ss_pred             EEEECCChhhHHHH-HHHHHHHhcccccCCCeEEEEEecCCCCCC----CCHhHHHhHhCCCccCCcceE-EEEeeccCC
Q 030289           89 FVVDSNDRERIGEA-KDELHRMLSEDELREAVLLVFANKQDLPNA----MSVSEVTDKLGLHSLRQRRWY-IQAACATSG  162 (180)
Q Consensus        89 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~  162 (180)
                      +|||++++.+++.+ ..|+..+...  ..+.|+++|+||+|+.++    ...++....     +...+++ ++++||++|
T Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~  172 (194)
T 3reg_A          100 LCFAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDL-----CQKLGCVAYIEASSVAK  172 (194)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCTTTTCCCHHHHHHH-----HHHHTCSCEEECBTTTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccCCCCcccHHHHHHH-----HHhcCCCEEEEeecCCC
Confidence            99999999999997 5666655432  357999999999998753    222222211     1223344 999999999


Q ss_pred             CChHHHHHHHHHHhhhc
Q 030289          163 QGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       163 ~~i~~~~~~l~~~~~~~  179 (180)
                      .|++++|+++.+.+.++
T Consensus       173 ~gi~~l~~~l~~~i~~~  189 (194)
T 3reg_A          173 IGLNEVFEKSVDCIFSN  189 (194)
T ss_dssp             BSHHHHHHHHHHHHHCS
T ss_pred             CCHHHHHHHHHHHHHhc
Confidence            99999999999998765

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=100.00  E-value=3.4e-32  Score=186.17  Aligned_cols=164  Identities=19%  Similarity=0.309  Sum_probs=124.3

Q ss_pred             hcccCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeE--EEEEEcC--eEEEEEEcCCCCCChhhHHhhccccC
Q 030289           11 LFARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV--ETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTH   85 (180)
Q Consensus        11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~   85 (180)
                      ......+||+++|++|||||||+++|+++.+ ..+.+|.+...  ..+...+  +.+.+|||||++.+...+..+++++|
T Consensus        21 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d  100 (192)
T 2il1_A           21 RPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAK  100 (192)
T ss_dssp             -CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCS
T ss_pred             cccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCC
Confidence            3346689999999999999999999998773 44556666443  4455543  68999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCC
Q 030289           86 GLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQ  163 (180)
Q Consensus        86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  163 (180)
                      ++++|||++++.+++.+..|+..+... ...+.|+++|+||+|+.+...  .++.... ...   ..+.+++++||++|.
T Consensus       101 ~iilV~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilV~NK~Dl~~~~~v~~~~~~~~-~~~---~~~~~~~~~SA~~g~  175 (192)
T 2il1_A          101 GIILVYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREITRQQGEKF-AQQ---ITGMRFCEASAKDNF  175 (192)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHH-HHT---STTCEEEECBTTTTB
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHH-HHh---cCCCeEEEEeCCCCC
Confidence            999999999999999998887766443 235799999999999875432  2222211 111   125689999999999


Q ss_pred             ChHHHHHHHHHHhhhc
Q 030289          164 GLYEGLDWLSSNVSAK  179 (180)
Q Consensus       164 ~i~~~~~~l~~~~~~~  179 (180)
                      |++++|+++.+.+.++
T Consensus       176 gi~~l~~~l~~~i~~~  191 (192)
T 2il1_A          176 NVDEIFLKLVDDILKK  191 (192)
T ss_dssp             SHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999999988764

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=100.00  E-value=2.7e-32  Score=182.75  Aligned_cols=159  Identities=24%  Similarity=0.403  Sum_probs=121.6

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeE--EEEEEc--CeEEEEEEcCCCCCChhhHHhhccccCEEEE
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV--ETVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF   89 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   89 (180)
                      ..+||+++|++|+|||||+++|.++.+ ..+.+|.+..+  ..+...  .+.+.+||+||++.+...+..+++++|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            468999999999999999999998873 45566666444  344443  4689999999999998889999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC-CHhHHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289           90 VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM-SVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG  168 (180)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (180)
                      |+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.. ..++.. .+    ....+++++++||++|.|++++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~-~~----~~~~~~~~~~~Sa~~~~gv~~l  155 (170)
T 1g16_A           82 VYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGE-AL----AKELGIPFIESSAKNDDNVNEI  155 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHH-HH----HHHHTCCEEECBTTTTBSHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCCcCccCHHHHH-HH----HHHcCCeEEEEECCCCCCHHHH
Confidence            999999999999999988776542 3578999999999995432 222222 11    1223457999999999999999


Q ss_pred             HHHHHHHhhhc
Q 030289          169 LDWLSSNVSAK  179 (180)
Q Consensus       169 ~~~l~~~~~~~  179 (180)
                      |.++.+.+.++
T Consensus       156 ~~~l~~~~~~~  166 (170)
T 1g16_A          156 FFTLAKLIQEK  166 (170)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=100.00  E-value=1.8e-31  Score=185.37  Aligned_cols=164  Identities=23%  Similarity=0.308  Sum_probs=120.8

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEc---CeEEEEEEcCCCCCChh-hHHhhccccCEEE
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK---NVSFTVWDVGGQDKIRP-LWRHYFQNTHGLI   88 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~---~~~~~i~D~~G~~~~~~-~~~~~~~~~~~~i   88 (180)
                      +.+.+||+++|++|||||||+++|+++.+....+++......+..+   +..+.+|||||++.+.. .+..+++++|+++
T Consensus         4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i   83 (214)
T 2fh5_B            4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVV   83 (214)
T ss_dssp             ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEE
Confidence            4568999999999999999999999888666566666666667665   68999999999999887 7888999999999


Q ss_pred             EEEECCChh-hHHHHHHHHHHHhcc--cccCCCeEEEEEecCCCCCCCCHhHHHhHhC----------------------
Q 030289           89 FVVDSNDRE-RIGEAKDELHRMLSE--DELREAVLLVFANKQDLPNAMSVSEVTDKLG----------------------  143 (180)
Q Consensus        89 ~v~d~~~~~-~~~~~~~~~~~~~~~--~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~----------------------  143 (180)
                      +|+|+++.. ++.....++...+..  ....++|+++|+||+|+.+....++..+.+.                      
T Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~  163 (214)
T 2fh5_B           84 FVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSST  163 (214)
T ss_dssp             EEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred             EEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCcc
Confidence            999998853 455666655555432  1235789999999999987655433322111                      


Q ss_pred             ---------CCccC-Cc--ceEEEEeeccCC------CChHHHHHHHHHHh
Q 030289          144 ---------LHSLR-QR--RWYIQAACATSG------QGLYEGLDWLSSNV  176 (180)
Q Consensus       144 ---------~~~~~-~~--~~~~~~~Sa~~~------~~i~~~~~~l~~~~  176 (180)
                               ..+.. ..  .++|++|||++|      .||+++|+++.+.+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~  214 (214)
T 2fh5_B          164 APAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA  214 (214)
T ss_dssp             -CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred             ccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence                     01111 11  789999999999      99999999998753

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.2e-32  Score=182.62  Aligned_cols=160  Identities=17%  Similarity=0.259  Sum_probs=124.1

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEEE-EEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET-VEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV   90 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (180)
                      +.+||+++|++|||||||+|+|.++.+ ..+.+|.+..+.. +..  ....+.+|||||++.+...+..+++.+|++++|
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   81 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence            468999999999999999999998773 3455676654433 233  346799999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhccc-ccCCCeEEEEEecCCCCCCCCH--hHHHhHhCCCccCCcceEEEEeeccCCCChHH
Q 030289           91 VDSNDRERIGEAKDELHRMLSED-ELREAVLLVFANKQDLPNAMSV--SEVTDKLGLHSLRQRRWYIQAACATSGQGLYE  167 (180)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  167 (180)
                      +|++++.+++....|+..+.... ..++.|+++|+||+|+.+....  .+.. .    .....+++++++||++|.|+++
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~-~----~~~~~~~~~~~~Sa~~~~gi~~  156 (172)
T 2erx_A           82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAE-A----LARTWKCAFMETSAKLNHNVKE  156 (172)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHH-H----HHHHHTCEEEECBTTTTBSHHH
T ss_pred             EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHH-H----HHHHhCCeEEEecCCCCcCHHH
Confidence            99999999988888877665432 2257899999999998654332  1211 1    1123356899999999999999


Q ss_pred             HHHHHHHHhhhc
Q 030289          168 GLDWLSSNVSAK  179 (180)
Q Consensus       168 ~~~~l~~~~~~~  179 (180)
                      +++++.+.+.++
T Consensus       157 l~~~l~~~~~~~  168 (172)
T 2erx_A          157 LFQELLNLEKRR  168 (172)
T ss_dssp             HHHHHHHTCCSS
T ss_pred             HHHHHHHHHhhh
Confidence            999999987654

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=100.00  E-value=2e-31  Score=183.52  Aligned_cols=159  Identities=19%  Similarity=0.368  Sum_probs=126.7

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEE--EEEcC------------------------------
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVET--VEYKN------------------------------   59 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~--~~~~~------------------------------   59 (180)
                      ++..+||+|+|++|||||||+++|++.. ...+.+|++..+..  +...+                              
T Consensus         4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (208)
T 3clv_A            4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH   83 (208)
T ss_dssp             CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence            3568999999999999999999999887 34455677654433  33333                              


Q ss_pred             ---------eEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCC
Q 030289           60 ---------VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP  130 (180)
Q Consensus        60 ---------~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~  130 (180)
                               ..+.+|||||++.+...+..+++++|++++|+|++++.+++.+..|+..+...   ...|+++|+||+|..
T Consensus        84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~---~~~piilv~NK~D~~  160 (208)
T 3clv_A           84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS---SNYIIILVANKIDKN  160 (208)
T ss_dssp             -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH---SCCEEEEEEECTTCC
T ss_pred             ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhh---CCCcEEEEEECCCcc
Confidence                     78999999999999999999999999999999999999999999998888654   348999999999932


Q ss_pred             C-CCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHHhhhc
Q 030289          131 N-AMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       131 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  179 (180)
                      . ....++.....     ...+++++++||++|.|++++|+++.+.+.++
T Consensus       161 ~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  205 (208)
T 3clv_A          161 KFQVDILEVQKYA-----QDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN  205 (208)
T ss_dssp             -CCSCHHHHHHHH-----HHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHH-----HHcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            2 22333333221     22456899999999999999999999987653

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=100.00  E-value=3.9e-32  Score=183.50  Aligned_cols=155  Identities=12%  Similarity=0.140  Sum_probs=119.4

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeE-EEEEEc--CeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV-ETVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV   90 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (180)
                      .+.+||+++|++|||||||+++|.++.+..+.||.+..+ ..+...  .+.+.+|||||+++     ..+++++|++++|
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv   79 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFV   79 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEE
Confidence            568999999999999999999999988666778877543 334443  46789999999886     4678889999999


Q ss_pred             EECCChhhHHHHHHHHHHHhcc--cccCCCeEEEEEecCCCCC--C--CCHhHHHhHhCCCccCC-cceEEEEeeccCCC
Q 030289           91 VDSNDRERIGEAKDELHRMLSE--DELREAVLLVFANKQDLPN--A--MSVSEVTDKLGLHSLRQ-RRWYIQAACATSGQ  163 (180)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~iiiv~nK~D~~~--~--~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~  163 (180)
                      ||++++++++.+..|+..+...  ...+++|+++|+||+|+.+  .  ...++....     +.. .+++++++||++|.
T Consensus        80 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~Sa~~~~  154 (178)
T 2iwr_A           80 FSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARAL-----XADMKRCSYYETXATYGL  154 (178)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHH-----HHHHSSEEEEEEBTTTTB
T ss_pred             EECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHH-----HHhhcCCeEEEEeccccC
Confidence            9999999999999875444322  1235789999999999842  2  223332221     111 24789999999999


Q ss_pred             ChHHHHHHHHHHhhh
Q 030289          164 GLYEGLDWLSSNVSA  178 (180)
Q Consensus       164 ~i~~~~~~l~~~~~~  178 (180)
                      |++++|+++.+.+.+
T Consensus       155 ~i~~lf~~l~~~~~~  169 (178)
T 2iwr_A          155 NVDRVFQEVAQKVVT  169 (178)
T ss_dssp             THHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999988765

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.98  E-value=9.1e-33  Score=192.84  Aligned_cols=164  Identities=19%  Similarity=0.315  Sum_probs=132.6

Q ss_pred             hhhcccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEEEEE----cCeEEEEEEcCCCCCChhhHHhhccc
Q 030289            9 KMLFARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWRHYFQN   83 (180)
Q Consensus         9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~   83 (180)
                      .+..+...+||+++|++|||||||+++|+.+. ...+.+|.+........    ..+.+.+|||||++.+...+..++++
T Consensus         8 ~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   87 (221)
T 3gj0_A            8 AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQ   87 (221)
T ss_dssp             STTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTT
T ss_pred             cCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhc
Confidence            44556788999999999999999999977665 44556777765554433    45789999999999999999999999


Q ss_pred             cCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCC
Q 030289           84 THGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQ  163 (180)
Q Consensus        84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  163 (180)
                      +|++++|||++++.+++.+..|+..+...  ..++|+++|+||+|+.+.....     .........++++++|||++|.
T Consensus        88 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~-----~~~~~~~~~~~~~~~~Sa~~~~  160 (221)
T 3gj0_A           88 AQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKA-----KSIVFHRKKNLQYYDISAKSNY  160 (221)
T ss_dssp             CCEEEEEEETTCHHHHHTHHHHHHHHHHH--STTCCEEEEEECTTSSSCSSCG-----GGCCHHHHHTCEEEECBGGGTB
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECCccccccccH-----HHHHHHHHcCCEEEEEeCCCCC
Confidence            99999999999999999999998888764  2578999999999997643221     1122233456789999999999


Q ss_pred             ChHHHHHHHHHHhhhc
Q 030289          164 GLYEGLDWLSSNVSAK  179 (180)
Q Consensus       164 ~i~~~~~~l~~~~~~~  179 (180)
                      |++++|.++.+.+...
T Consensus       161 gi~~l~~~l~~~l~~~  176 (221)
T 3gj0_A          161 NFEKPFLWLARKLIGD  176 (221)
T ss_dssp             TTTHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHhC
Confidence            9999999999988654

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.98  E-value=9.7e-33  Score=189.00  Aligned_cols=165  Identities=15%  Similarity=0.142  Sum_probs=125.2

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeE-EEEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEE
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV-ETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGL   87 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~-~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~   87 (180)
                      .+.+.+||+++|++|||||||+++|+++.+ ..+.+|++..+ ..+...+  +.+.+||+||++++...+..+++++|++
T Consensus        14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   93 (194)
T 2atx_A           14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF   93 (194)
T ss_dssp             CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence            345779999999999999999999998874 44566766444 2344443  7899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHh---------HhCCCccCCcce-EEEE
Q 030289           88 IFVVDSNDRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTD---------KLGLHSLRQRRW-YIQA  156 (180)
Q Consensus        88 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~---------~~~~~~~~~~~~-~~~~  156 (180)
                      ++|||++++++++.+. .|+..+...  .+++|+++|+||+|+.+.....+...         ......+...+. ++++
T Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  171 (194)
T 2atx_A           94 LICFSVVNPASFQNVKEEWVPELKEY--APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVE  171 (194)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEE
Confidence            9999999999999887 677776543  24789999999999976321100000         000001112233 7999


Q ss_pred             eeccCCCChHHHHHHHHHHhhh
Q 030289          157 ACATSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       157 ~Sa~~~~~i~~~~~~l~~~~~~  178 (180)
                      |||++|.|++++|+++.+.+..
T Consensus       172 ~Sa~~g~gi~~l~~~l~~~i~~  193 (194)
T 2atx_A          172 CSALTQKGLKTVFDEAIIAILT  193 (194)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHC
T ss_pred             eeCCCCCCHHHHHHHHHHHHhc
Confidence            9999999999999999998754

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.98  E-value=4.1e-32  Score=189.82  Aligned_cols=160  Identities=18%  Similarity=0.349  Sum_probs=122.1

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCc-ccccccccee--EEEEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFN--VETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGLI   88 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   88 (180)
                      ...+||+|+|++|||||||+++|.+..+ ..+.+|.+..  ...+...+  +.+.+|||||++.+...+..+++.+|+++
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi   90 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence            5679999999999999999999998874 3455666644  34455554  78999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChH
Q 030289           89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLY  166 (180)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  166 (180)
                      +|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+...  .++....     +...+++++++||+++.||+
T Consensus        91 lV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~  164 (223)
T 3cpj_B           91 IVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTF-----AQENQLLFTETSALNSENVD  164 (223)
T ss_dssp             EEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHH-----HHHTTCEEEECCCC-CCCHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHH-----HHHcCCEEEEEeCCCCCCHH
Confidence            9999999999999999988875442 35789999999999875332  2222211     12345689999999999999


Q ss_pred             HHHHHHHHHhhhc
Q 030289          167 EGLDWLSSNVSAK  179 (180)
Q Consensus       167 ~~~~~l~~~~~~~  179 (180)
                      ++|+++.+.+.++
T Consensus       165 ~l~~~l~~~i~~~  177 (223)
T 3cpj_B          165 KAFEELINTIYQK  177 (223)
T ss_dssp             HHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988754

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.98  E-value=2.1e-32  Score=188.38  Aligned_cols=159  Identities=20%  Similarity=0.330  Sum_probs=120.7

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCc-ccccccccee--EEEEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFN--VETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGLI   88 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   88 (180)
                      .+.+||+|+|++|||||||+++|+++.+ ..+.+|.+..  ...+...+  ..+.+|||||++.+...+..+++++|+++
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  102 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL  102 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence            5679999999999999999999998773 4455666543  44455544  78999999999888888889999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChH
Q 030289           89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLY  166 (180)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  166 (180)
                      +|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+...  ..+....     +...++++++|||++|.|++
T Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~SA~~g~gi~  176 (200)
T 2o52_A          103 LVYDITSRETYNSLAAWLTDARTLA-SPNIVVILCGNKKDLDPEREVTFLEASRF-----AQENELMFLETSALTGENVE  176 (200)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHT-CTTCEEEEEEECGGGGGGCCSCHHHHHHH-----HHHTTCEEEEECTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCcccccccCHHHHHHH-----HHHcCCEEEEEeCCCCCCHH
Confidence            9999999999999999988775432 35799999999999865332  2222211     12345689999999999999


Q ss_pred             HHHHHHHHHhhh
Q 030289          167 EGLDWLSSNVSA  178 (180)
Q Consensus       167 ~~~~~l~~~~~~  178 (180)
                      ++|.++.+.+.+
T Consensus       177 ~l~~~l~~~i~~  188 (200)
T 2o52_A          177 EAFLKCARTILN  188 (200)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998765

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.98  E-value=3e-31  Score=180.95  Aligned_cols=164  Identities=16%  Similarity=0.259  Sum_probs=116.6

Q ss_pred             hcccCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeE-EEEEEc--CeEEEEEEcCCCCCChhhHHhhccccCE
Q 030289           11 LFARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV-ETVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHG   86 (180)
Q Consensus        11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~   86 (180)
                      ...++.+||+++|++|||||||+++|+++.. ..+.+|.+..+ ..+...  .+.+.+||+||++.+...+..+++.+|+
T Consensus        16 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   95 (190)
T 3con_A           16 FQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG   95 (190)
T ss_dssp             ---CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSE
T ss_pred             ccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCE
Confidence            3346789999999999999999999998773 34445555433 334443  3679999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC-CHhHHHhHhCCCccCCcceEEEEeeccCCCCh
Q 030289           87 LIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM-SVSEVTDKLGLHSLRQRRWYIQAACATSGQGL  165 (180)
Q Consensus        87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  165 (180)
                      +++|||++++.+++.+..|+..+.......+.|+++|+||+|+.+.. ..++..+.     ....+++++++||+++.|+
T Consensus        96 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi  170 (190)
T 3con_A           96 FLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHEL-----AKSYGIPFIETSAKTRQGV  170 (190)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHH-----HHHHTCCEEECCTTTCTTH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHH-----HHHcCCeEEEEeCCCCCCH
Confidence            99999999999999998888877654333578999999999987632 22222221     1223457999999999999


Q ss_pred             HHHHHHHHHHhhhc
Q 030289          166 YEGLDWLSSNVSAK  179 (180)
Q Consensus       166 ~~~~~~l~~~~~~~  179 (180)
                      +++++++.+.+.+.
T Consensus       171 ~~l~~~l~~~~~~~  184 (190)
T 3con_A          171 EDAFYTLVREIRQY  184 (190)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988654

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.98  E-value=9.5e-32  Score=187.24  Aligned_cols=161  Identities=22%  Similarity=0.284  Sum_probs=126.6

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEEEEE--c---CeEEEEEEcCCCCCChhhHHhhccccCE
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEY--K---NVSFTVWDVGGQDKIRPLWRHYFQNTHG   86 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~~~~--~---~~~~~i~D~~G~~~~~~~~~~~~~~~~~   86 (180)
                      +...+||+++|++|||||||+|+|+++. ...+.+|.+........  .   .+.+.+|||||++.+...+..++.++|+
T Consensus         8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (218)
T 4djt_A            8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG   87 (218)
T ss_dssp             --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred             ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence            4568999999999999999999999877 44445777766555444  1   1789999999999998889999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCC
Q 030289           87 LIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQG  164 (180)
Q Consensus        87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  164 (180)
                      +++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+...  .++.. .+    +...+++++++||++|.|
T Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~-~~----~~~~~~~~~~~Sa~~g~g  161 (218)
T 4djt_A           88 AILFFDVTSRITCQNLARWVKEFQAVV-GNEAPIVVCANKIDIKNRQKISKKLVM-EV----LKGKNYEYFEISAKTAHN  161 (218)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHH-CSSSCEEEEEECTTCC----CCHHHHH-HH----TTTCCCEEEEEBTTTTBT
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHH-HH----HHHcCCcEEEEecCCCCC
Confidence            999999999999999988888775442 34689999999999976432  22222 22    234467899999999999


Q ss_pred             hHHHHHHHHHHhhhc
Q 030289          165 LYEGLDWLSSNVSAK  179 (180)
Q Consensus       165 i~~~~~~l~~~~~~~  179 (180)
                      ++++|+++.+.+.+.
T Consensus       162 v~~l~~~l~~~~~~~  176 (218)
T 4djt_A          162 FGLPFLHLARIFTGR  176 (218)
T ss_dssp             TTHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999988754

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.98  E-value=1e-31  Score=185.58  Aligned_cols=162  Identities=16%  Similarity=0.242  Sum_probs=126.3

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEE--EEEc--CeEEEEEEcCCCCCChhhHHhhccccCEE
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVET--VEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGL   87 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~--~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   87 (180)
                      +...+||+|+|++|||||||+++|++.. ...+.+|.+.....  +...  .+.+.+|||||++.+...+..+++++|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC   84 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence            4678999999999999999999999887 44556677655443  3333  47899999999999988889999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhccc---ccCCCeEEEEEecCCCCCCC-CHhHHHhHhCCCccCCcceEEEEeeccCCC
Q 030289           88 IFVVDSNDRERIGEAKDELHRMLSED---ELREAVLLVFANKQDLPNAM-SVSEVTDKLGLHSLRQRRWYIQAACATSGQ  163 (180)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~iiiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  163 (180)
                      ++|+|++++.+++.+..|+..+....   ...+.|+++|+||+|+.+.. ..++......    ...+++++++||++|.
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~  160 (207)
T 1vg8_A           85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY----SKNNIPYFETSAKEAI  160 (207)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH----HTTSCCEEECBTTTTB
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHH----hcCCceEEEEeCCCCC
Confidence            99999999999999988888775432   12478999999999997432 2222222111    1235679999999999


Q ss_pred             ChHHHHHHHHHHhhh
Q 030289          164 GLYEGLDWLSSNVSA  178 (180)
Q Consensus       164 ~i~~~~~~l~~~~~~  178 (180)
                      |++++|+++.+.+.+
T Consensus       161 gi~~l~~~l~~~~~~  175 (207)
T 1vg8_A          161 NVEQAFQTIARNALK  175 (207)
T ss_dssp             SHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999998764

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.98  E-value=5.5e-32  Score=183.07  Aligned_cols=163  Identities=14%  Similarity=0.246  Sum_probs=115.1

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCC-cccccccccee--EEEEEEc---CeEEEEEEcCCCCCChhhHHhhccccCE
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFN--VETVEYK---NVSFTVWDVGGQDKIRPLWRHYFQNTHG   86 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~--~~~~~~~---~~~~~i~D~~G~~~~~~~~~~~~~~~~~   86 (180)
                      +.+.+||+++|++|||||||+++|++.. ...+.+|.+..  ...+...   ...+.+||+||++.+...+..+++++|+
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC   84 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence            4678999999999999999999999887 44455666543  3344433   4789999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhccc---ccCCCeEEEEEecCCCCCCC---CHhHHHhHhCCCccCCcceEEEEeecc
Q 030289           87 LIFVVDSNDRERIGEAKDELHRMLSED---ELREAVLLVFANKQDLPNAM---SVSEVTDKLGLHSLRQRRWYIQAACAT  160 (180)
Q Consensus        87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~iiiv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~  160 (180)
                      +++|+|++++.+++.+..|+..+....   ...+.|+++|+||+|+....   ..++......    ...+.+++++||+
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~  160 (182)
T 1ky3_A           85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK----SLGDIPLFLTSAK  160 (182)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH----HTTSCCEEEEBTT
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH----hcCCCeEEEEecC
Confidence            999999999999999999888776432   22678999999999985421   2222222111    0234579999999


Q ss_pred             CCCChHHHHHHHHHHhhhc
Q 030289          161 SGQGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       161 ~~~~i~~~~~~l~~~~~~~  179 (180)
                      +|.|++++|+++.+.+.++
T Consensus       161 ~~~gi~~l~~~l~~~~~~~  179 (182)
T 1ky3_A          161 NAINVDTAFEEIARSALQQ  179 (182)
T ss_dssp             TTBSHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHh
Confidence            9999999999999987654

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.98  E-value=2.5e-32  Score=187.90  Aligned_cols=162  Identities=16%  Similarity=0.147  Sum_probs=118.7

Q ss_pred             hhcccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEE-EEEEcC--eEEEEEEcCCCCCChhhHHhhccccC
Q 030289           10 MLFARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE-TVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTH   85 (180)
Q Consensus        10 ~~~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~   85 (180)
                      .....+.+||+++|++|||||||+++|+++. ...+.+|++..+. .+..++  +.+.+|||||++.+...+..+++++|
T Consensus        14 ~~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   93 (201)
T 2q3h_A           14 GGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTD   93 (201)
T ss_dssp             ------CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCS
T ss_pred             CCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCc
Confidence            3456789999999999999999999999887 3445567764443 344444  57889999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCCC--------------CHhHHHhHhCCCccCCc
Q 030289           86 GLIFVVDSNDRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNAM--------------SVSEVTDKLGLHSLRQR  150 (180)
Q Consensus        86 ~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~--------------~~~~~~~~~~~~~~~~~  150 (180)
                      ++++|||++++.+++.+. .|+..+...  .++.|+++|+||+|+.+..              ..++...     .....
T Consensus        94 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~  166 (201)
T 2q3h_A           94 IFLLCFSVVSPSSFQNVSEKWVPEIRCH--CPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKL-----LAEEI  166 (201)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHH--CSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH-----HHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHH-----HHHhc
Confidence            999999999999999987 677766543  2479999999999986531              1111111     11122


Q ss_pred             ce-EEEEeeccCCCChHHHHHHHHHHhhh
Q 030289          151 RW-YIQAACATSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       151 ~~-~~~~~Sa~~~~~i~~~~~~l~~~~~~  178 (180)
                      +. ++++|||++|.|++++|+++.+.+.+
T Consensus       167 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  195 (201)
T 2q3h_A          167 KAASYIECSALTQKNLKEVFDAAIVAGIQ  195 (201)
T ss_dssp             TCSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEecCCCCCHHHHHHHHHHHHhc
Confidence            34 89999999999999999999998764

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.98  E-value=4.7e-31  Score=182.45  Aligned_cols=165  Identities=18%  Similarity=0.250  Sum_probs=121.0

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeE-EEEEEc--CeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV-ETVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLI   88 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   88 (180)
                      .+.++||+++|++|||||||+++|+++.+ ..+.+|++..+ ..+...  .+.+.+|||||++.+...+..+++++|+++
T Consensus        22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (207)
T 2fv8_A           22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (207)
T ss_dssp             GSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred             cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence            45678999999999999999999998873 34456666444 334444  368999999999999999999999999999


Q ss_pred             EEEECCChhhHHHH-HHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCC---------ccCCcce-EEEEe
Q 030289           89 FVVDSNDRERIGEA-KDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLH---------SLRQRRW-YIQAA  157 (180)
Q Consensus        89 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~---------~~~~~~~-~~~~~  157 (180)
                      +|||++++++++.+ ..|+..+...  .++.|+++|+||+|+.+.....+........         .+...+. +++++
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  179 (207)
T 2fv8_A          102 MCFSVDSPDSLENIPEKWVPEVKHF--CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLEC  179 (207)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEe
Confidence            99999999999888 5666655432  2578999999999997642222211111111         1112233 89999


Q ss_pred             eccCCCChHHHHHHHHHHhhhc
Q 030289          158 CATSGQGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       158 Sa~~~~~i~~~~~~l~~~~~~~  179 (180)
                      ||++|.|++++|+++.+.+.++
T Consensus       180 SA~~g~gi~el~~~l~~~i~~~  201 (207)
T 2fv8_A          180 SAKTKEGVREVFETATRAALQK  201 (207)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHSC
T ss_pred             eCCCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999987654

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.97  E-value=2.5e-31  Score=184.78  Aligned_cols=166  Identities=16%  Similarity=0.206  Sum_probs=107.9

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeE-EEEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEE
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV-ETVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGL   87 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~-~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   87 (180)
                      ...+.+||+++|++|||||||+++|+++.+ ..+.+|.+..+ ..+..  ..+.+.+|||||++.+...+..+++++|++
T Consensus        30 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~  109 (214)
T 2j1l_A           30 PGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVL  109 (214)
T ss_dssp             --CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEE
T ss_pred             CCcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEE
Confidence            345689999999999999999999998773 34456665443 23444  345899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhC---------CCccCCcce-EEEE
Q 030289           88 IFVVDSNDRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLG---------LHSLRQRRW-YIQA  156 (180)
Q Consensus        88 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~  156 (180)
                      ++|||++++.+++.+. .|+..+...  .+++|+++|+||+|+.+.....+......         ...+...+. ++++
T Consensus       110 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  187 (214)
T 2j1l_A          110 LLCFDVTSPNSFDNIFNRWYPEVNHF--CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLE  187 (214)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHH--CSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEE
Confidence            9999999999999887 677666443  25789999999999976432211111100         011122344 8999


Q ss_pred             eeccCCCChHHHHHHHHHHhhhc
Q 030289          157 ACATSGQGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       157 ~Sa~~~~~i~~~~~~l~~~~~~~  179 (180)
                      |||++|.|++++|+++.+.+.+.
T Consensus       188 ~SA~~g~gi~el~~~l~~~~~~~  210 (214)
T 2j1l_A          188 CSARLHDNVHAVFQEAAEVALSS  210 (214)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHHHC
T ss_pred             ecCCCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999988754

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.97  E-value=1.7e-32  Score=189.40  Aligned_cols=160  Identities=18%  Similarity=0.201  Sum_probs=96.2

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcC--Cc-cccccccc--eeEEEEEEc----CeEEEEEEcCCCCCChhhHHhhcccc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLG--EI-VTTIPTIG--FNVETVEYK----NVSFTVWDVGGQDKIRPLWRHYFQNT   84 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~--~~-~~~~~t~~--~~~~~~~~~----~~~~~i~D~~G~~~~~~~~~~~~~~~   84 (180)
                      ...+||+++|++|||||||+++|+++  .+ ..+.+|++  +....+...    .+.+.+|||||++.+...+..+++++
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            57899999999999999999999988  53 35567776  344455554    57899999999999999999999999


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHhcccc--cCCCeEEEEEecCCCCC-CCC--HhHHHhHhCCCccCCcceEEEEeec
Q 030289           85 HGLIFVVDSNDRERIGEAKDELHRMLSEDE--LREAVLLVFANKQDLPN-AMS--VSEVTDKLGLHSLRQRRWYIQAACA  159 (180)
Q Consensus        85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~iiiv~nK~D~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (180)
                      |++++|||++++.+++.+..|+..+.....  ..++|+++|+||+|+.+ ...  .++....     +...+++++++||
T Consensus        98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~-----~~~~~~~~~~~Sa  172 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDW-----ATTNTLDFFDVSA  172 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHH-----HHHTTCEEEECCC
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHH-----HHHcCCEEEEecc
Confidence            999999999999999999999888865432  25799999999999976 322  2332221     1223468999999


Q ss_pred             cC-CCChHHHHHHHHHHhhh
Q 030289          160 TS-GQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       160 ~~-~~~i~~~~~~l~~~~~~  178 (180)
                      ++ +.|++++|+++.+.+.+
T Consensus       173 ~~~~~gi~~l~~~i~~~~~~  192 (208)
T 2yc2_C          173 NPPGKDADAPFLSIATTFYR  192 (208)
T ss_dssp             -------CHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHH
Confidence            99 99999999999998764

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=3.8e-31  Score=181.54  Aligned_cols=162  Identities=15%  Similarity=0.243  Sum_probs=125.7

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEEE-EEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET-VEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLI   88 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   88 (180)
                      ....+||+++|++|||||||+++|.++.+ ..+.+|.+..+.. +..  ....+.+|||||++.+...+..+++++|+++
T Consensus         5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   84 (199)
T 2gf0_A            5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI   84 (199)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred             CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence            35679999999999999999999998773 3455676654433 233  3468999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcccc-cCCCeEEEEEecCCCCCCC-CHhHHHhHhCCCccCCcceEEEEeeccCCCChH
Q 030289           89 FVVDSNDRERIGEAKDELHRMLSEDE-LREAVLLVFANKQDLPNAM-SVSEVTDKLGLHSLRQRRWYIQAACATSGQGLY  166 (180)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  166 (180)
                      +|||++++.+++.+..|+..+..... ..+.|+++|+||+|+.+.. ..++.. .+    ....+++++++||++|.|++
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~----~~~~~~~~~~~Sa~~~~gi~  159 (199)
T 2gf0_A           85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQ-AV----AQEWKCAFMETSAKMNYNVK  159 (199)
T ss_dssp             EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHH-HH----HHHHTCEEEECBTTTTBSHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHH-HH----HHHhCCeEEEEecCCCCCHH
Confidence            99999999999888887766544321 2478999999999997632 222222 11    12334689999999999999


Q ss_pred             HHHHHHHHHhhhc
Q 030289          167 EGLDWLSSNVSAK  179 (180)
Q Consensus       167 ~~~~~l~~~~~~~  179 (180)
                      ++|+++.+.+.++
T Consensus       160 ~l~~~l~~~~~~~  172 (199)
T 2gf0_A          160 ELFQELLTLETRR  172 (199)
T ss_dssp             HHHHHHHHHCSSS
T ss_pred             HHHHHHHHHHhhh
Confidence            9999999987653

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.97  E-value=2.4e-31  Score=180.69  Aligned_cols=160  Identities=16%  Similarity=0.208  Sum_probs=123.2

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE-EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE-TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLI   88 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   88 (180)
                      +...+||+++|++|||||||+++|.++.+ ..+.+|.+..+. .+..  ..+.+.+||+||++.+...+..+++++|+++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   83 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   83 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence            46689999999999999999999998874 445677765443 2333  4578999999999999989999999999999


Q ss_pred             EEEECCChhhHHHH-HHHHHHHhcccccCCCeEEEEEecCCCCCC--------------CCHhHHHhHhCCCccCCcc-e
Q 030289           89 FVVDSNDRERIGEA-KDELHRMLSEDELREAVLLVFANKQDLPNA--------------MSVSEVTDKLGLHSLRQRR-W  152 (180)
Q Consensus        89 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~-~  152 (180)
                      +|||++++.+++.+ ..|+..+...  .++.|+++|+||+|+.++              ...++...     .+...+ .
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~  156 (184)
T 1m7b_A           84 ICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN-----MAKQIGAA  156 (184)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH-----HHHHHTCS
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHH-----HHHHcCCc
Confidence            99999999999988 5777666443  257999999999999742              11221111     111223 5


Q ss_pred             EEEEeecc-CCCChHHHHHHHHHHhhhc
Q 030289          153 YIQAACAT-SGQGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       153 ~~~~~Sa~-~~~~i~~~~~~l~~~~~~~  179 (180)
                      ++++|||+ ++.|++++|+.+.+.+.++
T Consensus       157 ~~~e~Sa~~~~~gi~~l~~~i~~~~l~k  184 (184)
T 1m7b_A          157 TYIECSALQSENSVRDIFHVATLACVNK  184 (184)
T ss_dssp             EEEECBTTTBHHHHHHHHHHHHHHHHTC
T ss_pred             EEEEeeecCCCcCHHHHHHHHHHHHhcC
Confidence            89999999 6899999999999988754

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.97  E-value=4e-31  Score=183.29  Aligned_cols=162  Identities=23%  Similarity=0.371  Sum_probs=125.2

Q ss_pred             hcccCccEEEEEcCCCCChHHHHHHhhcCC-cccccccccee--EEEEEEcC--eEEEEEEcCCCCCChhhHHhhccccC
Q 030289           11 LFARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFN--VETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTH   85 (180)
Q Consensus        11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~   85 (180)
                      ......+||+|+|++|||||||+++|++.. ...+.+|++..  ...+...+  +.+.+|||||++.+...+..+++.+|
T Consensus        15 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   94 (213)
T 3cph_A           15 KSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAM   94 (213)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCS
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence            344678999999999999999999999877 34556666644  44555555  78999999999999888999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC-CHhHHHhHhCCCccCCcceEEEEeeccCCCC
Q 030289           86 GLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM-SVSEVTDKLGLHSLRQRRWYIQAACATSGQG  164 (180)
Q Consensus        86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  164 (180)
                      ++++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.... ..++.. .+    ....+++++++||+++.|
T Consensus        95 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~-~~----~~~~~~~~~~~Sa~~~~g  168 (213)
T 3cph_A           95 GIILVYDVTDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGE-AL----AKELGIPFIESSAKNDDN  168 (213)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHT-TTCSEEEEEEECTTCSSCCSCHHHHH-HH----HHHHTCCEEECBTTTTBS
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCcccccCHHHHH-HH----HHHcCCEEEEEeCCCCCC
Confidence            9999999999999999888888776542 2478999999999995422 222221 11    112345799999999999


Q ss_pred             hHHHHHHHHHHhhh
Q 030289          165 LYEGLDWLSSNVSA  178 (180)
Q Consensus       165 i~~~~~~l~~~~~~  178 (180)
                      ++++|.++.+.+.+
T Consensus       169 i~~l~~~l~~~~~~  182 (213)
T 3cph_A          169 VNEIFFTLAKLIQE  182 (213)
T ss_dssp             SHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988765

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.97  E-value=8.9e-32  Score=185.30  Aligned_cols=166  Identities=16%  Similarity=0.217  Sum_probs=124.1

Q ss_pred             hcccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeE-EEEEEc--CeEEEEEEcCCCCCChhhHHhhccccCE
Q 030289           11 LFARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV-ETVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHG   86 (180)
Q Consensus        11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~   86 (180)
                      .++...+||+++|++|||||||+++|.++. ...+.+|++..+ ..+...  .+.+.+|||||++.+...+..+++++|+
T Consensus        20 ~m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~   99 (201)
T 2gco_A           20 HMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDV   99 (201)
T ss_dssp             --CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSE
T ss_pred             CCcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCE
Confidence            345778999999999999999999999887 344556666443 334443  4689999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHH-HHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhC---------CCccCCcce-EEE
Q 030289           87 LIFVVDSNDRERIGEA-KDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLG---------LHSLRQRRW-YIQ  155 (180)
Q Consensus        87 ~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~---------~~~~~~~~~-~~~  155 (180)
                      +++|||++++++++.+ ..|+..+...  .++.|+++|+||+|+.+.....+......         ...+...+. +++
T Consensus       100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  177 (201)
T 2gco_A          100 ILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYL  177 (201)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEE
Confidence            9999999999999988 4566555432  25789999999999976422111111100         011112234 799


Q ss_pred             EeeccCCCChHHHHHHHHHHhhh
Q 030289          156 AACATSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       156 ~~Sa~~~~~i~~~~~~l~~~~~~  178 (180)
                      ++||++|.|++++|+++.+.+.+
T Consensus       178 ~~SA~~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          178 ECSAKTKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             EeeCCCCCCHHHHHHHHHHHHhc
Confidence            99999999999999999998754

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.97  E-value=3.1e-31  Score=180.05  Aligned_cols=164  Identities=18%  Similarity=0.189  Sum_probs=123.6

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEE-EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE-TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF   89 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   89 (180)
                      ++.+||+++|++|||||||+++|.++. ...+.+|++..+. .+..  ..+.+.+|||||++.+...+..+++++|++++
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   82 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence            567999999999999999999999877 3445566664432 3344  34678899999999999999999999999999


Q ss_pred             EEECCChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhC---------CCccCCcce-EEEEee
Q 030289           90 VVDSNDRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLG---------LHSLRQRRW-YIQAAC  158 (180)
Q Consensus        90 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~S  158 (180)
                      |||++++.+++... .|+..+...  .++.|+++|+||+|+.+.....+......         ...+...+. +++++|
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  160 (186)
T 1mh1_A           83 CFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  160 (186)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHH--STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEECCChhhHHHHHHHHHHHHHHh--CCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence            99999999999887 576666443  24789999999999865421111111100         011122344 899999


Q ss_pred             ccCCCChHHHHHHHHHHhhhc
Q 030289          159 ATSGQGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       159 a~~~~~i~~~~~~l~~~~~~~  179 (180)
                      |++|.|++++|+++.+.+.+.
T Consensus       161 a~~g~gi~~l~~~l~~~~~~~  181 (186)
T 1mh1_A          161 ALTQRGLKTVFDEAIRAVLCP  181 (186)
T ss_dssp             TTTCTTHHHHHHHHHHHHSCC
T ss_pred             CCCccCHHHHHHHHHHHHhcc
Confidence            999999999999999988653

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.97  E-value=8.6e-32  Score=184.70  Aligned_cols=165  Identities=18%  Similarity=0.253  Sum_probs=116.5

Q ss_pred             hhhcccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEE--E--EE-EcCeEEEEEEcCCCCCChhhH---Hhh
Q 030289            9 KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--T--VE-YKNVSFTVWDVGGQDKIRPLW---RHY   80 (180)
Q Consensus         9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~--~--~~-~~~~~~~i~D~~G~~~~~~~~---~~~   80 (180)
                      ....+.+.+||+++|++|||||||++++.+........+.+....  .  +. ...+.+.+|||||+++|....   ..+
T Consensus        13 ~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~   92 (196)
T 3llu_A           13 NLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI   92 (196)
T ss_dssp             -------CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHH
T ss_pred             CCcccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccc
Confidence            455678899999999999999999998887553332222222221  2  22 356899999999999987776   899


Q ss_pred             ccccCEEEEEEECCCh--hhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC----HhHHHh----HhCCCccCCc
Q 030289           81 FQNTHGLIFVVDSNDR--ERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS----VSEVTD----KLGLHSLRQR  150 (180)
Q Consensus        81 ~~~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~----~~~~~~----~~~~~~~~~~  150 (180)
                      ++++|++++|||++++  +++..+..|+......  .++.|+++|+||+|+.++..    ..++..    .+........
T Consensus        93 ~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  170 (196)
T 3llu_A           93 FRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV--NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKL  170 (196)
T ss_dssp             HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred             cccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc--CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcC
Confidence            9999999999999987  6777777777776432  35899999999999876321    111211    2222222256


Q ss_pred             ceEEEEeeccCCCChHHHHHHHHHHh
Q 030289          151 RWYIQAACATSGQGLYEGLDWLSSNV  176 (180)
Q Consensus       151 ~~~~~~~Sa~~~~~i~~~~~~l~~~~  176 (180)
                      ++++++|||++ .||+++|..+++.+
T Consensus       171 ~~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          171 HLSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             CEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             CcceEEEEech-hhHHHHHHHHHHHh
Confidence            78999999999 99999999999876

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.97  E-value=3.1e-31  Score=183.03  Aligned_cols=163  Identities=18%  Similarity=0.214  Sum_probs=120.2

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE-EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEE
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE-TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGL   87 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   87 (180)
                      ...+.+||+++|++|||||||+++|+.+.+ ..+.+|++..+. .+..  ..+.+.+|||||++.+...+..+++++|++
T Consensus        26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  105 (204)
T 4gzl_A           26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF  105 (204)
T ss_dssp             ----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             hcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence            347789999999999999999999998774 345566653332 3333  446677999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCC---------ccCCcc-eEEEE
Q 030289           88 IFVVDSNDRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLH---------SLRQRR-WYIQA  156 (180)
Q Consensus        88 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~  156 (180)
                      ++|||++++.+++... .|+..+....  .+.|+++|+||+|+.+.....+........         .+...+ .++++
T Consensus       106 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  183 (204)
T 4gzl_A          106 LICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE  183 (204)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEE
Confidence            9999999999999987 6766664432  579999999999987643222221111111         111122 36999


Q ss_pred             eeccCCCChHHHHHHHHHHh
Q 030289          157 ACATSGQGLYEGLDWLSSNV  176 (180)
Q Consensus       157 ~Sa~~~~~i~~~~~~l~~~~  176 (180)
                      |||++|.|++++|+++.+.+
T Consensus       184 ~SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          184 CSALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             CCTTTCTTHHHHHHHHHHTT
T ss_pred             eeCCCCCCHHHHHHHHHHHh
Confidence            99999999999999999865

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.97  E-value=3.6e-31  Score=181.10  Aligned_cols=161  Identities=16%  Similarity=0.153  Sum_probs=116.5

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCC--ccccccccc--eeEEEEEEcC--eEEEEEEcCCCCC-ChhhHHhhccccC
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIPTIG--FNVETVEYKN--VSFTVWDVGGQDK-IRPLWRHYFQNTH   85 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~--~~~~~~t~~--~~~~~~~~~~--~~~~i~D~~G~~~-~~~~~~~~~~~~~   85 (180)
                      .+..+||+++|++|||||||+|+|.+..  +....++++  .....+.+++  +.+.+|||+|... +......+++.+|
T Consensus         3 ~~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~   82 (192)
T 2cjw_A            3 GMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD   82 (192)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence            4567999999999999999999998633  344334444  3334455544  5678999999776 4556777888999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCC
Q 030289           86 GLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQ  163 (180)
Q Consensus        86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  163 (180)
                      ++++|||++++++++....|+..+.......+.|+++|+||+|+.....  .++.. .    .+...++++++|||++|.
T Consensus        83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~-~----~a~~~~~~~~e~SA~~g~  157 (192)
T 2cjw_A           83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGR-A----XAVVFDXKFIETSAAVQH  157 (192)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHH-H----HHHHTTCEEEECBTTTTB
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHH-H----HHHHhCCceEEeccccCC
Confidence            9999999999999999998887765433335789999999999865322  22211 1    112234589999999999


Q ss_pred             ChHHHHHHHHHHhhh
Q 030289          164 GLYEGLDWLSSNVSA  178 (180)
Q Consensus       164 ~i~~~~~~l~~~~~~  178 (180)
                      ||+++|+++.+.+..
T Consensus       158 ~v~~lf~~l~~~~~~  172 (192)
T 2cjw_A          158 NVKELFEGIVRQVRL  172 (192)
T ss_dssp             SHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999988753

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.97  E-value=8e-31  Score=181.81  Aligned_cols=159  Identities=16%  Similarity=0.169  Sum_probs=123.1

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEE-EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE-TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF   89 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   89 (180)
                      .+.+||+++|++|||||||+++|.++. ...+.+|++..+. .+..  ..+.+.+|||||++.+...+..+++++|++++
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~il   86 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   86 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEE
Confidence            467999999999999999999999887 3455677764443 3334  34789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCCC----------CHhHHHhHhCCCccCCcc-eEEEEe
Q 030289           90 VVDSNDRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNAM----------SVSEVTDKLGLHSLRQRR-WYIQAA  157 (180)
Q Consensus        90 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~  157 (180)
                      |||++++++++.+. .|+..+...  .++.|+++|+||+|+.++.          ..++...     .+...+ .+++++
T Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~~~~~  159 (212)
T 2j0v_A           87 AFSLISKASYENVLKKWMPELRRF--APNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEE-----LRKQIGAAAYIEC  159 (212)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHH--CTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHH-----HHHHHTCSEEEEC
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHH-----HHHHcCCceEEEc
Confidence            99999999999987 677766543  2479999999999986542          1111111     112223 389999


Q ss_pred             eccCCCChHHHHHHHHHHhhhc
Q 030289          158 CATSGQGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       158 Sa~~~~~i~~~~~~l~~~~~~~  179 (180)
                      ||++|.|++++|+++.+.+.+.
T Consensus       160 Sa~~g~gi~~l~~~l~~~~~~~  181 (212)
T 2j0v_A          160 SSKTQQNVKAVFDTAIKVVLQP  181 (212)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHCC
T ss_pred             cCCCCCCHHHHHHHHHHHHhhh
Confidence            9999999999999999987653

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.97  E-value=2.2e-31  Score=180.24  Aligned_cols=159  Identities=16%  Similarity=0.168  Sum_probs=112.2

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE---EEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE---TVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLI   88 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   88 (180)
                      ..+.+||+++|++|+|||||++++..+.+ ..+.+|++..+.   .+....+.+.+|||||++++...+..+++++|+++
T Consensus         5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   84 (182)
T 3bwd_D            5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI   84 (182)
T ss_dssp             --CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence            35689999999999999999999998773 344566553321   12334567889999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCCCCH------------hHHHhHhCCCccCCcce-EE
Q 030289           89 FVVDSNDRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNAMSV------------SEVTDKLGLHSLRQRRW-YI  154 (180)
Q Consensus        89 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~------------~~~~~~~~~~~~~~~~~-~~  154 (180)
                      +|||++++.+++.+. .|+..+...  .++.|+++|+||+|+.+....            ++..     ......+. ++
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~~~~~~  157 (182)
T 3bwd_D           85 LAFSLISKASYENVSKKWIPELKHY--APGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGE-----ELKKLIGAPAY  157 (182)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH--CTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHH-----HHHHHHTCSEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEechhhhcCcccccccccCCCCCHHHHH-----HHHHHcCCCEE
Confidence            999999999999987 577666443  247899999999998654221            1111     11122343 89


Q ss_pred             EEeeccCCCChHHHHHHHHHHhhh
Q 030289          155 QAACATSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       155 ~~~Sa~~~~~i~~~~~~l~~~~~~  178 (180)
                      ++|||++|.|++++|+++.+.+.+
T Consensus       158 ~~~Sa~~~~gi~~l~~~l~~~i~~  181 (182)
T 3bwd_D          158 IECSSKSQENVKGVFDAAIRVVLQ  181 (182)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhc
Confidence            999999999999999999998754

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.97  E-value=7e-31  Score=181.38  Aligned_cols=160  Identities=16%  Similarity=0.208  Sum_probs=123.4

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE-EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE-TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLI   88 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   88 (180)
                      ....+||+++|++|||||||+++|.++.+ ..+.+|.+..+. .+..  ..+.+.+|||||++.+...+..+++++|+++
T Consensus        25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  104 (205)
T 1gwn_A           25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL  104 (205)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence            46789999999999999999999998874 445677765543 2333  3578999999999999999999999999999


Q ss_pred             EEEECCChhhHHHH-HHHHHHHhcccccCCCeEEEEEecCCCCCC--------------CCHhHHHhHhCCCccCCcc-e
Q 030289           89 FVVDSNDRERIGEA-KDELHRMLSEDELREAVLLVFANKQDLPNA--------------MSVSEVTDKLGLHSLRQRR-W  152 (180)
Q Consensus        89 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~-~  152 (180)
                      +|||++++.+++.+ ..|+..+...  .++.|+++|+||+|+.++              ...++...     .+...+ .
T Consensus       105 lv~D~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~  177 (205)
T 1gwn_A          105 ICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN-----MAKQIGAA  177 (205)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH-----HHHHHTCS
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHH-----HHHHcCCC
Confidence            99999999999988 6777766443  257999999999999742              11111111     111223 5


Q ss_pred             EEEEeecc-CCCChHHHHHHHHHHhhhc
Q 030289          153 YIQAACAT-SGQGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       153 ~~~~~Sa~-~~~~i~~~~~~l~~~~~~~  179 (180)
                      ++++|||+ ++.|++++|+.+.+.+.++
T Consensus       178 ~~~e~SAk~~~~gv~~lf~~l~~~~l~~  205 (205)
T 1gwn_A          178 TYIECSALQSENSVRDIFHVATLACVNK  205 (205)
T ss_dssp             EEEECCTTTCHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEeeeccCCcCHHHHHHHHHHHHhhC
Confidence            89999999 6899999999999988754

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.97  E-value=9.2e-32  Score=182.83  Aligned_cols=163  Identities=17%  Similarity=0.276  Sum_probs=117.8

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCC---ccccccccceeEEEEEE-------cCeEEEEEEcCCCCCChhhHHhhcccc
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGE---IVTTIPTIGFNVETVEY-------KNVSFTVWDVGGQDKIRPLWRHYFQNT   84 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~---~~~~~~t~~~~~~~~~~-------~~~~~~i~D~~G~~~~~~~~~~~~~~~   84 (180)
                      +++||+++|++|||||||+++|++..   ...+.+|++..+.....       ..+.+.+|||+|++++...+..+++++
T Consensus         1 ~~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   80 (184)
T 2zej_A            1 NRMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQR   80 (184)
T ss_dssp             --CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCC
Confidence            36899999999999999999999853   33456788877655432       467899999999998888888999999


Q ss_pred             CEEEEEEECCCh-hhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcce----EEEEeec
Q 030289           85 HGLIFVVDSNDR-ERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRW----YIQAACA  159 (180)
Q Consensus        85 ~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Sa  159 (180)
                      +++++|||++++ .+++.+..|+..+...  .++.|+++|+||+|+.+.....+.........+...++    .++++||
T Consensus        81 ~~~i~v~d~~~~~~s~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (184)
T 2zej_A           81 ALYLAVYDLSKGQAEVDAMKPWLFNIKAR--ASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNA  158 (184)
T ss_dssp             EEEEEEEEGGGCHHHHHTHHHHHHHHHHH--CTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCT
T ss_pred             cEEEEEEeCCcchhHHHHHHHHHHHHHhh--CCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEec
Confidence            999999999987 5788888998887543  24789999999999976433221111111112222333    4999999


Q ss_pred             cCCC-ChHHHHHHHHHHhhhc
Q 030289          160 TSGQ-GLYEGLDWLSSNVSAK  179 (180)
Q Consensus       160 ~~~~-~i~~~~~~l~~~~~~~  179 (180)
                      +++. +++++++.+.+.+.+.
T Consensus       159 ~~~~~~~~~l~~~i~~~~~~~  179 (184)
T 2zej_A          159 TEESDALAKLRKTIINESLNF  179 (184)
T ss_dssp             TSCCHHHHHHHHHHHHHHHCC
T ss_pred             ccCchhHHHHHHHHHHHHhcc
Confidence            9997 9999999999887653

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.97  E-value=3.8e-33  Score=191.87  Aligned_cols=162  Identities=21%  Similarity=0.376  Sum_probs=119.8

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccc--eeEEEEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGLI   88 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~--~~~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   88 (180)
                      .+.+||+|+|++|||||||+|+|+++. ...+.++.+  .....+...+  +.+.+|||||++.+...+..+++++|+++
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  110 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII  110 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence            557999999999999999999999877 334445554  4455566654  78999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289           89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG  168 (180)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (180)
                      +|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+......   ..........+++++++||++|.|++++
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~v~~---~~~~~~~~~~~~~~~~vSA~~g~gv~~l  186 (199)
T 3l0i_B          111 VVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDY---TTAKEFADSLGIPFLETSAKNATNVEQS  186 (199)
T ss_dssp             ECC-CCCSHHHHHHHHHHHHHHSCC--CCSEEEEC-CCSSCC--CCCCS---CC-CHHHHTTTCCBCCCCC---HHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhc-cCCCCEEEEEECccCCccccCCH---HHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence            9999999999999999988885543 35799999999999875432110   0111112233467999999999999999


Q ss_pred             HHHHHHHhhhc
Q 030289          169 LDWLSSNVSAK  179 (180)
Q Consensus       169 ~~~l~~~~~~~  179 (180)
                      |+++.+.+.++
T Consensus       187 ~~~l~~~l~~~  197 (199)
T 3l0i_B          187 FMTMAAEIKKR  197 (199)
T ss_dssp             HHHHTTTTTTT
T ss_pred             HHHHHHHHHHh
Confidence            99999988765

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.97  E-value=1.7e-30  Score=188.40  Aligned_cols=158  Identities=15%  Similarity=0.163  Sum_probs=118.2

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCCcc----ccccccceeEEEEEEcCeEEEEEEcCCCCCChh---hHHhhccccCEEEEE
Q 030289           18 RILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRP---LWRHYFQNTHGLIFV   90 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~~~----~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~~~~i~v   90 (180)
                      ||+++|+.|||||||++++.++...    ...||+++.+..+. ..+++++|||+|+++|+.   .+..++++++++++|
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV   79 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYV   79 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEE
Confidence            6899999999999999998766532    35689998877763 468999999999999964   468999999999999


Q ss_pred             EECCCh--hhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCH----hHHHhHhCCCccC----CcceEEEEeecc
Q 030289           91 VDSNDR--ERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSV----SEVTDKLGLHSLR----QRRWYIQAACAT  160 (180)
Q Consensus        91 ~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~----~~~~~~~~~~~~~----~~~~~~~~~Sa~  160 (180)
                      ||++++  +.++....|+..+..  ..+++|+++++||+|+.++...    .++....+...++    ..+++||+|||+
T Consensus        80 ~Ditd~~~~~~~~l~~~l~~~~~--~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAk  157 (331)
T 3r7w_B           80 IDSQDEYINAITNLAMIIEYAYK--VNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIF  157 (331)
T ss_dssp             CCCSSCTTHHHHHHHHHHHHHHH--HCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSS
T ss_pred             EECCchHHHHHHHHHHHHHHHhh--cCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccC
Confidence            999987  333333333433322  2368999999999999864321    2333333333333    368899999999


Q ss_pred             CCCChHHHHHHHHHHhhhc
Q 030289          161 SGQGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       161 ~~~~i~~~~~~l~~~~~~~  179 (180)
                      + .||+++|..+++.+.++
T Consensus       158 d-~nV~eAFs~iv~~li~~  175 (331)
T 3r7w_B          158 D-HSIYEAFSRIVQKLIPE  175 (331)
T ss_dssp             S-SHHHHHHHHHHTTSSTT
T ss_pred             C-CcHHHHHHHHHHHHHhh
Confidence            8 59999999999887643

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.97  E-value=2.5e-29  Score=169.53  Aligned_cols=162  Identities=18%  Similarity=0.177  Sum_probs=120.3

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhhcCCcc-cccc--ccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLI   88 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   88 (180)
                      +..+.++|+++|++|||||||+++|++..+. .+.+  +.......+...+..+.+|||||++.+...+..++..+|+++
T Consensus         4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   83 (178)
T 2lkc_A            4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVI   83 (178)
T ss_dssp             TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence            4578999999999999999999999987733 3333  334555667778889999999999999988889999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCC--ccCCc--ceEEEEeeccCCCC
Q 030289           89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLH--SLRQR--RWYIQAACATSGQG  164 (180)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~Sa~~~~~  164 (180)
                      +|+|++++...+.. ..+..+.    ..++|+++|+||+|+.+. ..+++...+...  .....  ..+++++||++|.|
T Consensus        84 ~v~d~~~~~~~~~~-~~l~~~~----~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  157 (178)
T 2lkc_A           84 LVVAADDGVMPQTV-EAINHAK----AANVPIIVAINKMDKPEA-NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEG  157 (178)
T ss_dssp             EEEETTCCCCHHHH-HHHHHHG----GGSCCEEEEEETTTSSCS-CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHH
T ss_pred             EEEECCCCCcHHHH-HHHHHHH----hCCCCEEEEEECccCCcC-CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCC
Confidence            99999874322222 2222221    247899999999999764 333333333221  11222  27899999999999


Q ss_pred             hHHHHHHHHHHhhhc
Q 030289          165 LYEGLDWLSSNVSAK  179 (180)
Q Consensus       165 i~~~~~~l~~~~~~~  179 (180)
                      ++++|+++.+.+...
T Consensus       158 v~~l~~~l~~~~~~~  172 (178)
T 2lkc_A          158 LDHLLEMILLVSEME  172 (178)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhhhh
Confidence            999999999887653

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.97  E-value=3.3e-29  Score=175.65  Aligned_cols=163  Identities=14%  Similarity=0.121  Sum_probs=114.1

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCcc-ccc--cccceeEEEEEEcCeEEEEEEcCCCC------CC---hhhHHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEIV-TTI--PTIGFNVETVEYKNVSFTVWDVGGQD------KI---RPLWRHYF   81 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~-~~~--~t~~~~~~~~~~~~~~~~i~D~~G~~------~~---~~~~~~~~   81 (180)
                      .+.++|+|+|++|||||||+|+|++..+. ...  .|.......+...+..+.+|||||+.      ..   ...+..++
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~  106 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALA  106 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhh
Confidence            57899999999999999999999988743 222  25556666667788999999999983      31   12234457


Q ss_pred             cccCEEEEEEECCChhhHH--HHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcc--eEEEEe
Q 030289           82 QNTHGLIFVVDSNDRERIG--EAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRR--WYIQAA  157 (180)
Q Consensus        82 ~~~~~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  157 (180)
                      ..+|++++|+|++++.+++  ....|+..+...  ..+.|+++|+||+|+.+...................+  +++++|
T Consensus       107 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (228)
T 2qu8_A          107 HINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSF  184 (228)
T ss_dssp             TSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred             ccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEE
Confidence            7889999999999887654  334566555432  2478999999999997654332211111111112223  789999


Q ss_pred             eccCCCChHHHHHHHHHHhhh
Q 030289          158 CATSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       158 Sa~~~~~i~~~~~~l~~~~~~  178 (180)
                      ||++|.||+++|+++.+.+.+
T Consensus       185 SA~~g~gi~~l~~~l~~~i~~  205 (228)
T 2qu8_A          185 STLTGVGVEQAKITACELLKN  205 (228)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHH
T ss_pred             ecccCCCHHHHHHHHHHHHHH
Confidence            999999999999999998764

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.94  E-value=6e-32  Score=186.51  Aligned_cols=164  Identities=20%  Similarity=0.241  Sum_probs=123.6

Q ss_pred             hcccCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE-EE--EEcCeEEEEEEcCCCCCChhhHHhhccccCE
Q 030289           11 LFARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE-TV--EYKNVSFTVWDVGGQDKIRPLWRHYFQNTHG   86 (180)
Q Consensus        11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~-~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   86 (180)
                      .+..+.+||+++|++|||||||+++|+++.+ ..+.+|++..+. .+  ....+.+.+|||||++.+...+..+++++|+
T Consensus        25 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  104 (204)
T 3th5_A           25 YFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDV  104 (204)
Confidence            4457789999999999999999999997773 344455543322 22  2345677899999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCCCCHh---------HHHhHhCCCccCCcce-EEE
Q 030289           87 LIFVVDSNDRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNAMSVS---------EVTDKLGLHSLRQRRW-YIQ  155 (180)
Q Consensus        87 ~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~---------~~~~~~~~~~~~~~~~-~~~  155 (180)
                      +++|||++++.+++... .|+..+...  .++.|+++|+||+|+.+.....         .+........+...+. +++
T Consensus       105 iilv~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  182 (204)
T 3th5_A          105 FLICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYL  182 (204)
Confidence            99999999999998887 666655432  2378999999999997643211         1111222233344455 899


Q ss_pred             EeeccCCCChHHHHHHHHHHh
Q 030289          156 AACATSGQGLYEGLDWLSSNV  176 (180)
Q Consensus       156 ~~Sa~~~~~i~~~~~~l~~~~  176 (180)
                      +|||++|.|++++|+++.+.+
T Consensus       183 ~vSA~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          183 ECSALTQRGLKTVFDEAIRAV  203 (204)
Confidence            999999999999999998765

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.96  E-value=1.8e-28  Score=163.85  Aligned_cols=148  Identities=24%  Similarity=0.288  Sum_probs=110.2

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCC-cccccc--ccceeEEEEEEcCeEEEEEEcCCCCCCh------hhHHhhcc--c
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGE-IVTTIP--TIGFNVETVEYKNVSFTVWDVGGQDKIR------PLWRHYFQ--N   83 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~--~   83 (180)
                      +.++|+++|++|||||||+|+|.+.. .....|  |.......+..++..+.+|||||+..+.      .....+++  +
T Consensus         2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~   81 (165)
T 2wji_A            2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK   81 (165)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHC
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCC
Confidence            46899999999999999999999866 333344  3445556677788999999999988774      34566665  8


Q ss_pred             cCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC----CHhHHHhHhCCCccCCcceEEEEeec
Q 030289           84 THGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM----SVSEVTDKLGLHSLRQRRWYIQAACA  159 (180)
Q Consensus        84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (180)
                      +|++++|+|+++.+.   ...|+..+..    .+.|+++|+||+|+....    ..+++...+        +++++++||
T Consensus        82 ~~~~i~v~D~~~~~~---~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~--------~~~~~~~SA  146 (165)
T 2wji_A           82 PDLVVNIVDATALER---NLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKIL--------GVKVVPLSA  146 (165)
T ss_dssp             CSEEEEEEETTCHHH---HHHHHHHHHH----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHH--------TSCEEECBG
T ss_pred             CCEEEEEecCCchhH---hHHHHHHHHh----cCCCEEEEEEchHhccccChhhHHHHHHHHh--------CCCEEEEEc
Confidence            999999999987543   3446555533    368999999999975321    223333333        347999999


Q ss_pred             cCCCChHHHHHHHHHHhh
Q 030289          160 TSGQGLYEGLDWLSSNVS  177 (180)
Q Consensus       160 ~~~~~i~~~~~~l~~~~~  177 (180)
                      ++|.|++++|+++.+.+.
T Consensus       147 ~~~~~v~~l~~~l~~~~~  164 (165)
T 2wji_A          147 AKKMGIEELKKAISIAVK  164 (165)
T ss_dssp             GGTBSHHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHhh
Confidence            999999999999998764

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.96  E-value=1.2e-28  Score=165.79  Aligned_cols=152  Identities=18%  Similarity=0.246  Sum_probs=111.3

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCCc--ccccc--ccceeEEEEEEcCeEEEEEEcCCCCCChhh--------HHhhcc
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNVSFTVWDVGGQDKIRPL--------WRHYFQ   82 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~   82 (180)
                      +.++|+++|++|||||||+|+|.+...  ....+  |.+.....+..++..+.+|||||+..+...        ...+++
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   82 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIE   82 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHH
Confidence            568999999999999999999998752  22222  444556677778889999999998764211        224578


Q ss_pred             ccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCC
Q 030289           83 NTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSG  162 (180)
Q Consensus        83 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  162 (180)
                      ++|++++|+|++++.+++ ...|+..+... ...++|+++|+||+|+.++.          .......+.++++|||++|
T Consensus        83 ~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~----------~~~~~~~~~~~~~~SA~~g  150 (172)
T 2gj8_A           83 QADRVLFMVDGTTTDAVD-PAEIWPEFIAR-LPAKLPITVVRNKADITGET----------LGMSEVNGHALIRLSARTG  150 (172)
T ss_dssp             TCSEEEEEEETTTCCCCS-HHHHCHHHHHH-SCTTCCEEEEEECHHHHCCC----------CEEEEETTEEEEECCTTTC
T ss_pred             hCCEEEEEEECCCCCCHH-HHHHHHHHHHh-cccCCCEEEEEECccCCcch----------hhhhhccCCceEEEeCCCC
Confidence            999999999999877765 34565555432 23478999999999985421          1112224578999999999


Q ss_pred             CChHHHHHHHHHHhhh
Q 030289          163 QGLYEGLDWLSSNVSA  178 (180)
Q Consensus       163 ~~i~~~~~~l~~~~~~  178 (180)
                      .|++++|+++.+.+..
T Consensus       151 ~gv~~l~~~l~~~~~~  166 (172)
T 2gj8_A          151 EGVDVLRNHLKQSMGF  166 (172)
T ss_dssp             TTHHHHHHHHHHHC--
T ss_pred             CCHHHHHHHHHHHhhh
Confidence            9999999999987654

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.96  E-value=3.5e-29  Score=171.31  Aligned_cols=163  Identities=13%  Similarity=0.102  Sum_probs=109.6

Q ss_pred             hhhcccCccEEEEEcCCCCChHHHHHHhhcCC-cccccccccee--EEEEEEcCeEEEEEEcCC----------CCCChh
Q 030289            9 KMLFARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFN--VETVEYKNVSFTVWDVGG----------QDKIRP   75 (180)
Q Consensus         9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~--~~~~~~~~~~~~i~D~~G----------~~~~~~   75 (180)
                      ++....+.++|+++|++|||||||+|+|++.. ...+.++.+..  ...+.. +.++.+|||||          ++.+..
T Consensus        16 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~   94 (195)
T 1svi_A           16 EQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII-NDELHFVDVPGYGFAKVSKSEREAWGR   94 (195)
T ss_dssp             GGSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE-TTTEEEEECCCBCCCSSCHHHHHHHHH
T ss_pred             hhCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE-CCcEEEEECCCCCccccCHHHHHHHHH
Confidence            44455688999999999999999999999876 33333433322  122222 34799999999          556666


Q ss_pred             hHHhhcccc---CEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcce
Q 030289           76 LWRHYFQNT---HGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRW  152 (180)
Q Consensus        76 ~~~~~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  152 (180)
                      .+..+++.+   |++++|+|++++.+.....  +...+..   .+.|+++|+||+|+.+...................+.
T Consensus        95 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  169 (195)
T 1svi_A           95 MIETYITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPED  169 (195)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTS
T ss_pred             HHHHHHhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCC
Confidence            777888777   9999999998876654432  1122221   4789999999999987554432222211111123456


Q ss_pred             EEEEeeccCCCChHHHHHHHHHHhh
Q 030289          153 YIQAACATSGQGLYEGLDWLSSNVS  177 (180)
Q Consensus       153 ~~~~~Sa~~~~~i~~~~~~l~~~~~  177 (180)
                      +++++||++|.|++++++++.+.+.
T Consensus       170 ~~~~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          170 ELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             ceEEEEccCCCCHHHHHHHHHHHhc
Confidence            8999999999999999999998875

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.96  E-value=4.5e-29  Score=181.93  Aligned_cols=162  Identities=18%  Similarity=0.209  Sum_probs=123.4

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCC--c--cccccccceeEEEEEE-cCeEEEEEEcCCCCCC-----hhhHHhhcccc
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGE--I--VTTIPTIGFNVETVEY-KNVSFTVWDVGGQDKI-----RPLWRHYFQNT   84 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~--~--~~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~-----~~~~~~~~~~~   84 (180)
                      ..+||+++|++|||||||+++++++.  .  ..+.+|++..+..+.. ++..+.+|||||++.+     ...+..+++++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a   81 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMV   81 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence            46899999999999999999998873  2  2456799988888876 6789999999999887     67788899999


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHhccc-ccCCCeEEEEEecCCCCCCCCHh---HHHhHhCCCccCCc---ceEEEEe
Q 030289           85 HGLIFVVDSNDRERIGEAKDELHRMLSED-ELREAVLLVFANKQDLPNAMSVS---EVTDKLGLHSLRQR---RWYIQAA  157 (180)
Q Consensus        85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiiv~nK~D~~~~~~~~---~~~~~~~~~~~~~~---~~~~~~~  157 (180)
                      |++++|||++++++++.+..|...+.... ..+++|+++|+||+|+.++....   +.........+...   .+++++|
T Consensus        82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~t  161 (307)
T 3r7w_A           82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPT  161 (307)
T ss_dssp             SEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEEC
T ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEe
Confidence            99999999999999988876644332211 13579999999999997621111   01111111222233   3689999


Q ss_pred             eccCCCChHHHHHHHHHHhh
Q 030289          158 CATSGQGLYEGLDWLSSNVS  177 (180)
Q Consensus       158 Sa~~~~~i~~~~~~l~~~~~  177 (180)
                      ||++ .++.++|..+++.+.
T Consensus       162 Sa~~-~~i~e~~~~iv~~li  180 (307)
T 3r7w_A          162 SIWD-ESLYKAWSQIVCSLI  180 (307)
T ss_dssp             CTTS-SHHHHHHHHHHHTTC
T ss_pred             eecC-ChHHHHHHHHHHHHc
Confidence            9999 899999999987654

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.96  E-value=1.7e-28  Score=162.89  Aligned_cols=147  Identities=20%  Similarity=0.251  Sum_probs=106.6

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCCc--ccccc--ccceeEEEEEEcCeEEEEEEcCCCCC-------ChhhHHhhccccC
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNVSFTVWDVGGQDK-------IRPLWRHYFQNTH   85 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~~   85 (180)
                      +||+++|++|+|||||+++|.+...  ....+  |.......+...+..+.+|||||+..       +...+..+++.+|
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   81 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE   81 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence            5899999999999999999998762  22222  34456666777888999999999887       3455677889999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcce-EEEEeeccCCCC
Q 030289           86 GLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRW-YIQAACATSGQG  164 (180)
Q Consensus        86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~  164 (180)
                      ++++|+|++++.+.  ...++..++..   .+.|+++|+||+|+.+..  ++..     ... ..++ +++++||++|.|
T Consensus        82 ~~i~v~d~~~~~~~--~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~--~~~~-----~~~-~~~~~~~~~~Sa~~~~g  148 (161)
T 2dyk_A           82 VVLFAVDGRAELTQ--ADYEVAEYLRR---KGKPVILVATKVDDPKHE--LYLG-----PLY-GLGFGDPIPTSSEHARG  148 (161)
T ss_dssp             EEEEEEESSSCCCH--HHHHHHHHHHH---HTCCEEEEEECCCSGGGG--GGCG-----GGG-GGSSCSCEECBTTTTBS
T ss_pred             EEEEEEECCCcccH--hHHHHHHHHHh---cCCCEEEEEECcccccch--HhHH-----HHH-hCCCCCeEEEecccCCC
Confidence            99999999875332  22333333332   468999999999997641  1111     111 2334 689999999999


Q ss_pred             hHHHHHHHHHHh
Q 030289          165 LYEGLDWLSSNV  176 (180)
Q Consensus       165 i~~~~~~l~~~~  176 (180)
                      ++++|+++.+.+
T Consensus       149 v~~l~~~l~~~l  160 (161)
T 2dyk_A          149 LEELLEAIWERL  160 (161)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             hHHHHHHHHHhC
Confidence            999999998875

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.96  E-value=7e-29  Score=169.59  Aligned_cols=164  Identities=16%  Similarity=0.149  Sum_probs=112.8

Q ss_pred             hhhcccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEE-EEEEcCeEEEEEEcCC----------CCCChhhH
Q 030289            9 KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE-TVEYKNVSFTVWDVGG----------QDKIRPLW   77 (180)
Q Consensus         9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~-~~~~~~~~~~i~D~~G----------~~~~~~~~   77 (180)
                      ++..+...+||+++|++|||||||+|+|++.......++.+.... .+...+.++.+|||||          ++.+...+
T Consensus        16 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   95 (195)
T 3pqc_A           16 GDYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLV   95 (195)
T ss_dssp             TCCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred             hhCCCCCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHH
Confidence            344557789999999999999999999998875444454443222 1222345788999999          55566667


Q ss_pred             Hhhcccc---CEEEEEEECCChhhH--HHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcce
Q 030289           78 RHYFQNT---HGLIFVVDSNDRERI--GEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRW  152 (180)
Q Consensus        78 ~~~~~~~---~~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  152 (180)
                      ..+++.+   |++++|+|+++..+.  ..+..|+..       .+.|+++|+||+|+.++.......+...........+
T Consensus        96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~-------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  168 (195)
T 3pqc_A           96 EDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS-------LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEY  168 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCS
T ss_pred             HHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH-------cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCC
Confidence            7777766   999999998765332  233334332       2689999999999986544333222221111111345


Q ss_pred             EEEEeeccCCCChHHHHHHHHHHhhhc
Q 030289          153 YIQAACATSGQGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       153 ~~~~~Sa~~~~~i~~~~~~l~~~~~~~  179 (180)
                      +++++||++|.|++++|+++.+.+.++
T Consensus       169 ~~~~~Sa~~~~gv~~l~~~l~~~l~~~  195 (195)
T 3pqc_A          169 TIIPTSSVTGEGISELLDLISTLLKEN  195 (195)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHHHC--
T ss_pred             ceEEEecCCCCCHHHHHHHHHHHhhcC
Confidence            899999999999999999999988653

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.96  E-value=3.2e-29  Score=170.70  Aligned_cols=160  Identities=17%  Similarity=0.210  Sum_probs=113.7

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEEEEEcCeEEEEEEcCC-----------CCCChhhHHhhccc-
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKNVSFTVWDVGG-----------QDKIRPLWRHYFQN-   83 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~~~~~-   83 (180)
                      +||+++|++|||||||+++|++.. ...+.|++......+...  .+.+|||||           ++.+...+..++++ 
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN   79 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhh
Confidence            689999999999999999999887 334455555555555544  789999999           45566677777777 


Q ss_pred             cCEEEEEEECCChhhHHHH-HHHHHH--------HhcccccCCCeEEEEEecCCCCCCC--CHhHHHhHhCCCccCCcce
Q 030289           84 THGLIFVVDSNDRERIGEA-KDELHR--------MLSEDELREAVLLVFANKQDLPNAM--SVSEVTDKLGLHSLRQRRW  152 (180)
Q Consensus        84 ~~~~i~v~d~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~iiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~  152 (180)
                      ++++++|+++.+..++... ..|...        +.......++|+++|+||+|+.+..  ..+++...++... .....
T Consensus        80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~  158 (190)
T 2cxx_A           80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPL-SEIDK  158 (190)
T ss_dssp             GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCG-GGHHH
T ss_pred             hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhhh-hccCC
Confidence            7777777777666777665 444431        2222223578999999999998753  2334444544421 11134


Q ss_pred             EEEEeeccCCCChHHHHHHHHHHhhhc
Q 030289          153 YIQAACATSGQGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       153 ~~~~~Sa~~~~~i~~~~~~l~~~~~~~  179 (180)
                      ++++|||++|.|++++|+++.+.+.++
T Consensus       159 ~~~~~Sa~~~~~v~~l~~~l~~~~~~~  185 (190)
T 2cxx_A          159 VFIPISAKFGDNIERLKNRIFEVIRER  185 (190)
T ss_dssp             HEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             cEEEEecCCCCCHHHHHHHHHHhcchh
Confidence            689999999999999999999988764

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.95  E-value=1.2e-27  Score=176.05  Aligned_cols=165  Identities=18%  Similarity=0.187  Sum_probs=122.9

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeE-EEEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV-ETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGLI   88 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~-~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   88 (180)
                      ....+||+++|++|+|||||+++++++. ...+.+|++..+ ..+..++  +.+.+|||||++.+...+..+++++|+++
T Consensus       152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  231 (332)
T 2wkq_A          152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  231 (332)
T ss_dssp             HTTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred             ccceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence            3567999999999999999999999877 344556665433 2344444  55669999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCC---------CccCCcce-EEEEe
Q 030289           89 FVVDSNDRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGL---------HSLRQRRW-YIQAA  157 (180)
Q Consensus        89 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~  157 (180)
                      +|||++++.+++.+. .|+..+...  ..++|+++|+||+|+.+.....+.......         ..+...+. ++++|
T Consensus       232 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  309 (332)
T 2wkq_A          232 ICFSLVSPASFHHVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  309 (332)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH--CTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhh--CCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEe
Confidence            999999999998887 566665443  247899999999998653211111111100         01122344 89999


Q ss_pred             eccCCCChHHHHHHHHHHhhhc
Q 030289          158 CATSGQGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       158 Sa~~~~~i~~~~~~l~~~~~~~  179 (180)
                      ||++|.|++++|+++.+.+.+.
T Consensus       310 Sa~~~~gi~~l~~~l~~~~~~~  331 (332)
T 2wkq_A          310 SALTQRGLKTVFDEAIRAVLCP  331 (332)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHC-
T ss_pred             cCCCCcCHHHHHHHHHHHHhcC
Confidence            9999999999999999988653

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.95  E-value=4.6e-29  Score=177.59  Aligned_cols=163  Identities=11%  Similarity=0.156  Sum_probs=116.3

Q ss_pred             hcccCccEEEEEcCC---------CCChHHHHHHhhc---CC-cccccccc-ceeE--E----------------EEEEc
Q 030289           11 LFARKEMRILMVGLD---------AAGKTTILYKLKL---GE-IVTTIPTI-GFNV--E----------------TVEYK   58 (180)
Q Consensus        11 ~~~~~~~~i~i~G~~---------~~GKStli~~l~~---~~-~~~~~~t~-~~~~--~----------------~~~~~   58 (180)
                      ......+||+++|.+         |||||||+++|.+   .. ...+.+|+ +..+  .                .++..
T Consensus        14 ~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   93 (255)
T 3c5h_A           14 LYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCV   93 (255)
T ss_dssp             SSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC-------
T ss_pred             CCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCc
Confidence            345678999999999         9999999999998   33 33444443 2111  0                12335


Q ss_pred             CeEEEEEE-----------------------cCCCCCChhhHHhhcc---------------------ccCEEEEEEECC
Q 030289           59 NVSFTVWD-----------------------VGGQDKIRPLWRHYFQ---------------------NTHGLIFVVDSN   94 (180)
Q Consensus        59 ~~~~~i~D-----------------------~~G~~~~~~~~~~~~~---------------------~~~~~i~v~d~~   94 (180)
                      .+.+.+||                       ++|++++...+..+++                     ++|++++|||++
T Consensus        94 ~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t  173 (255)
T 3c5h_A           94 ECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS  173 (255)
T ss_dssp             --CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB
T ss_pred             EEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECC
Confidence            67899999                       6677777777777777                     799999999999


Q ss_pred             Ch--hhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHH
Q 030289           95 DR--ERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWL  172 (180)
Q Consensus        95 ~~--~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  172 (180)
                      ++  .+++.+..|+..+.......++|+++|+||+|+.+....++.... ..   ...++++++|||++|.|++++|+++
T Consensus       174 ~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~-~~---~~~~~~~~e~SAk~g~gv~elf~~l  249 (255)
T 3c5h_A          174 RGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTF-AL---SKKNLQVVETSARSNVNVDLAFSTL  249 (255)
T ss_dssp             C----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHH-HH---TSSSCCEEECBTTTTBSHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHH-HH---hcCCCeEEEEECCCCCCHHHHHHHH
Confidence            98  999999999888765433467999999999999654333222211 10   1125689999999999999999999


Q ss_pred             HHHhh
Q 030289          173 SSNVS  177 (180)
Q Consensus       173 ~~~~~  177 (180)
                      .+.+.
T Consensus       250 ~~~l~  254 (255)
T 3c5h_A          250 VQLID  254 (255)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            98875

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.95  E-value=2.5e-27  Score=161.13  Aligned_cols=152  Identities=22%  Similarity=0.265  Sum_probs=116.3

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccc--cceeEEEEEEcCeEEEEEEcCCCCCCh------hhHHhhcc-
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPT--IGFNVETVEYKNVSFTVWDVGGQDKIR------PLWRHYFQ-   82 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t--~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~-   82 (180)
                      +++.++|+++|++|||||||+++|++.. .....++  .......+...+..+.+|||||+..+.      ..+..++. 
T Consensus         4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   83 (188)
T 2wjg_A            4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIIN   83 (188)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence            4678999999999999999999999876 3344454  345556677788999999999998874      44666665 


Q ss_pred             -ccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC----CHhHHHhHhCCCccCCcceEEEEe
Q 030289           83 -NTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM----SVSEVTDKLGLHSLRQRRWYIQAA  157 (180)
Q Consensus        83 -~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  157 (180)
                       .+|++++|+|.++   ++....|+..+..    .+.|+++|+||+|+....    ...++.+.+        +++++++
T Consensus        84 ~~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--------~~~~~~~  148 (188)
T 2wjg_A           84 EKPDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKIL--------GVKVVPL  148 (188)
T ss_dssp             HCCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHH--------TSCEEEC
T ss_pred             cCCCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccchHHHHHHHHHh--------CCCeEEE
Confidence             4999999999874   4555667666643    478999999999975422    233333333        3479999


Q ss_pred             eccCCCChHHHHHHHHHHhhhc
Q 030289          158 CATSGQGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       158 Sa~~~~~i~~~~~~l~~~~~~~  179 (180)
                      ||+++.|++++|+++.+.+.++
T Consensus       149 Sa~~~~~v~~l~~~i~~~~~~~  170 (188)
T 2wjg_A          149 SAAKKMGIEELKKAISIAVKDK  170 (188)
T ss_dssp             BGGGTBSHHHHHHHHHHHHTTC
T ss_pred             EecCCCCHHHHHHHHHHHHHhc
Confidence            9999999999999999987654

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.95  E-value=2e-27  Score=163.28  Aligned_cols=159  Identities=16%  Similarity=0.323  Sum_probs=121.8

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC-cccccccccee--EEEEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFN--VETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGLI   88 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   88 (180)
                      ...++|+++|++|||||||+++|++.. ...+.+|.+..  ...+.+.+  +.+.+||++|++.++..+..+++.+++++
T Consensus         3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i   82 (199)
T 2f9l_A            3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   82 (199)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence            346899999999999999999999887 34455666544  44565654  57889999999988888888899999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC--CHhHHHhHhCCCccCCcceEEEEeeccCCCChH
Q 030289           89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM--SVSEVTDKLGLHSLRQRRWYIQAACATSGQGLY  166 (180)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  166 (180)
                      +|+|+++..+++.+..|+..+... ...+.|+++++||+|+.+..  ..++...     .+...++.++++|++++.|++
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~-----l~~~~~~~~~d~Sal~~~~i~  156 (199)
T 2f9l_A           83 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARA-----FAEKNNLSFIETSALDSTNVE  156 (199)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHH-----HHHHTTCEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHHH-----HHHHcCCeEEEEeCCCCCCHH
Confidence            999999998888888887765432 23468999999999996532  2222221     122345689999999999999


Q ss_pred             HHHHHHHHHhhh
Q 030289          167 EGLDWLSSNVSA  178 (180)
Q Consensus       167 ~~~~~l~~~~~~  178 (180)
                      ++++++.+.+.+
T Consensus       157 ~l~~~l~~~~~~  168 (199)
T 2f9l_A          157 EAFKNILTEIYR  168 (199)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988754

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.94  E-value=2.1e-26  Score=167.87  Aligned_cols=161  Identities=16%  Similarity=0.129  Sum_probs=119.9

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhhcCCcc--ccc--cccceeEEEEEEc-CeEEEEEEcCCCCCCh----------hh
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLKLGEIV--TTI--PTIGFNVETVEYK-NVSFTVWDVGGQDKIR----------PL   76 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~--~~~--~t~~~~~~~~~~~-~~~~~i~D~~G~~~~~----------~~   76 (180)
                      .+...-.|+++|.+|||||||+|+|++....  ...  .|.......+... +.++.+|||||.....          ..
T Consensus         6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~   85 (308)
T 3iev_A            6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEI   85 (308)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHH
Confidence            4567789999999999999999999988733  222  2444555556667 8999999999986654          56


Q ss_pred             HHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCC-CCCCHhHHHhHhCCCccCCcceEEE
Q 030289           77 WRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP-NAMSVSEVTDKLGLHSLRQRRWYIQ  155 (180)
Q Consensus        77 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~  155 (180)
                      ...+++.+|++++|+|+++..+.+....|+..+..    .+.|+++|+||+|+. +.....+....+....  ....+++
T Consensus        86 ~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~--~~~~~i~  159 (308)
T 3iev_A           86 AKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKH--PELTEIV  159 (308)
T ss_dssp             HHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHC--TTCCCEE
T ss_pred             HHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhc--cCCCeEE
Confidence            77788999999999999988777776666666543    468999999999997 4333333222221110  0124699


Q ss_pred             EeeccCCCChHHHHHHHHHHhhh
Q 030289          156 AACATSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       156 ~~Sa~~~~~i~~~~~~l~~~~~~  178 (180)
                      ++||++|.|++++++++.+.+.+
T Consensus       160 ~vSA~~g~gv~~L~~~l~~~l~~  182 (308)
T 3iev_A          160 PISALKGANLDELVKTILKYLPE  182 (308)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHSCB
T ss_pred             EEeCCCCCCHHHHHHHHHHhCcc
Confidence            99999999999999999988754

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.94  E-value=2.6e-26  Score=163.47  Aligned_cols=150  Identities=19%  Similarity=0.256  Sum_probs=112.9

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCC-cccccc--ccceeEEEEEEcCeEEEEEEcCCCCCChh------hHHhhc--
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIP--TIGFNVETVEYKNVSFTVWDVGGQDKIRP------LWRHYF--   81 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~--   81 (180)
                      +++.++|+++|++|||||||+|+|++.. .....|  |+......+...+..+.+|||||...+..      ....++  
T Consensus         2 ~~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~   81 (258)
T 3a1s_A            2 PLHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLK   81 (258)
T ss_dssp             -CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence            3567999999999999999999999877 333334  44455556677789999999999887653      335555  


Q ss_pred             cccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC----CCHhHHHhHhCCCccCCcceEEEEe
Q 030289           82 QNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA----MSVSEVTDKLGLHSLRQRRWYIQAA  157 (180)
Q Consensus        82 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  157 (180)
                      .++|++++|+|+++.++.   ..|+..+..    .++|+++|+||+|+...    .+..++...+        +++++++
T Consensus        82 ~~~d~ii~V~D~t~~~~~---~~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~l--------g~~vi~~  146 (258)
T 3a1s_A           82 GDADLVILVADSVNPEQS---LYLLLEILE----MEKKVILAMTAIDEAKKTGMKIDRYELQKHL--------GIPVVFT  146 (258)
T ss_dssp             SCCSEEEEEEETTSCHHH---HHHHHHHHT----TTCCEEEEEECHHHHHHTTCCBCHHHHHHHH--------CSCEEEC
T ss_pred             cCCCEEEEEeCCCchhhH---HHHHHHHHh----cCCCEEEEEECcCCCCccchHHHHHHHHHHc--------CCCEEEE
Confidence            489999999999886543   345555543    37899999999997542    1233444443        3579999


Q ss_pred             eccCCCChHHHHHHHHHHhh
Q 030289          158 CATSGQGLYEGLDWLSSNVS  177 (180)
Q Consensus       158 Sa~~~~~i~~~~~~l~~~~~  177 (180)
                      ||++|.|++++++++.+.+.
T Consensus       147 SA~~g~gi~el~~~i~~~~~  166 (258)
T 3a1s_A          147 SSVTGEGLEELKEKIVEYAQ  166 (258)
T ss_dssp             CTTTCTTHHHHHHHHHHHHH
T ss_pred             EeeCCcCHHHHHHHHHHHhh
Confidence            99999999999999998764

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.94  E-value=1.9e-26  Score=157.48  Aligned_cols=157  Identities=15%  Similarity=0.327  Sum_probs=121.6

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeE--EEEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV--ETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGLI   88 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   88 (180)
                      ...++|+++|++|||||||++++.+.. ...+.+|++..+  ..+.+.+  +.+.+||++|.+++...+..+++.+++++
T Consensus        27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i  106 (191)
T 1oix_A           27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL  106 (191)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence            346899999999999999999999887 445667777544  4555555  45677999999999888888999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC--CHhHHHhHhCCCccCCcceEEEEeeccCCCChH
Q 030289           89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM--SVSEVTDKLGLHSLRQRRWYIQAACATSGQGLY  166 (180)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  166 (180)
                      +|+|+.+..+++.+..|+..+... .....|+++++||+|+.+..  ..++.. .+    +...++.++.+|++++.|++
T Consensus       107 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~-~l----~~~~~~~~ld~Sald~~~v~  180 (191)
T 1oix_A          107 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEAR-AF----AEKNGLSFIETSALDSTNVE  180 (191)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHH-HH----HHHTTCEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHH-HH----HHHcCCEEEEEeCCCCCCHH
Confidence            999999998888888787665432 23468999999999986532  222221 11    22345689999999999999


Q ss_pred             HHHHHHHHHh
Q 030289          167 EGLDWLSSNV  176 (180)
Q Consensus       167 ~~~~~l~~~~  176 (180)
                      ++++.+.+.+
T Consensus       181 ~l~~~l~~~i  190 (191)
T 1oix_A          181 AAFQTILTEI  190 (191)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998875

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.94  E-value=2.4e-27  Score=165.47  Aligned_cols=166  Identities=16%  Similarity=0.126  Sum_probs=111.2

Q ss_pred             hhhcccCccEEEEEcCCCCChHHHHHHhhcCC---cccccc--ccceeEEEEE-EcCeEEEEEEcCCCCC----------
Q 030289            9 KMLFARKEMRILMVGLDAAGKTTILYKLKLGE---IVTTIP--TIGFNVETVE-YKNVSFTVWDVGGQDK----------   72 (180)
Q Consensus         9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~---~~~~~~--t~~~~~~~~~-~~~~~~~i~D~~G~~~----------   72 (180)
                      .+..+...++|+++|++|||||||+|+|++..   .....+  |.......+. ..+..+.+|||||...          
T Consensus        22 ~~~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~  101 (223)
T 4dhe_A           22 RDLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAH  101 (223)
T ss_dssp             GGSCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHH
T ss_pred             hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHH
Confidence            44555678999999999999999999999876   222222  3333333443 3468899999999533          


Q ss_pred             ChhhHHhhccc---cCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccC-
Q 030289           73 IRPLWRHYFQN---THGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLR-  148 (180)
Q Consensus        73 ~~~~~~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~-  148 (180)
                      +......+++.   +|++++|+|+++..+ .....++..+ ..   .+.|+++|+||+|+.+.....+....+...... 
T Consensus       102 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~~-~~~~~~~~~l-~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~  176 (223)
T 4dhe_A          102 WEQLLSSYLQTRPQLCGMILMMDARRPLT-ELDRRMIEWF-AP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAY  176 (223)
T ss_dssp             HHHHHHHHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHH-GG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCcCcCEEEEEEeCCCCCC-HHHHHHHHHH-Hh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhh
Confidence            24556666666   788999999986433 1222333333 22   468999999999998744322222111111011 


Q ss_pred             -----CcceEEEEeeccCCCChHHHHHHHHHHhhhc
Q 030289          149 -----QRRWYIQAACATSGQGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       149 -----~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  179 (180)
                           ....+++++||++|.|+++++++|.+.+...
T Consensus       177 ~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~  212 (223)
T 4dhe_A          177 RDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPA  212 (223)
T ss_dssp             HHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred             hhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence                 2457899999999999999999999987643

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.94  E-value=4.9e-26  Score=165.22  Aligned_cols=156  Identities=16%  Similarity=0.096  Sum_probs=112.8

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCcc--cccc--ccceeEEEEEEcCeEEEEEEcCCCCC--------ChhhHHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNVSFTVWDVGGQDK--------IRPLWRHYF   81 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~   81 (180)
                      .+..+|+++|.+|||||||+|+|++....  +..|  |.......+...+.++.+|||||...        +......++
T Consensus         5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l   84 (301)
T 1wf3_A            5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL   84 (301)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHH
Confidence            34567999999999999999999988732  2222  33333344556789999999999876        345567788


Q ss_pred             cccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC-HhHHHhHhCCCccCCcceEEEEeecc
Q 030289           82 QNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS-VSEVTDKLGLHSLRQRRWYIQAACAT  160 (180)
Q Consensus        82 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~  160 (180)
                      +.+|++++|+|++++.+.  ...|+...+... ..+.|+++|+||+|+.+... ..+....+      ....+++++||+
T Consensus        85 ~~ad~il~VvD~~~~~~~--~~~~i~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~------~~~~~~~~iSA~  155 (301)
T 1wf3_A           85 ADVNAVVWVVDLRHPPTP--EDELVARALKPL-VGKVPILLVGNKLDAAKYPEEAMKAYHEL------LPEAEPRMLSAL  155 (301)
T ss_dssp             SSCSEEEEEEETTSCCCH--HHHHHHHHHGGG-TTTSCEEEEEECGGGCSSHHHHHHHHHHT------STTSEEEECCTT
T ss_pred             hcCCEEEEEEECCCCCCh--HHHHHHHHHHhh-cCCCCEEEEEECcccCCchHHHHHHHHHh------cCcCcEEEEeCC
Confidence            999999999999876432  245554433332 14789999999999976433 33333333      112479999999


Q ss_pred             CCCChHHHHHHHHHHhhh
Q 030289          161 SGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       161 ~~~~i~~~~~~l~~~~~~  178 (180)
                      +|.|++++++.+.+.+.+
T Consensus       156 ~g~gv~~l~~~l~~~l~~  173 (301)
T 1wf3_A          156 DERQVAELKADLLALMPE  173 (301)
T ss_dssp             CHHHHHHHHHHHHTTCCB
T ss_pred             CCCCHHHHHHHHHHhccc
Confidence            999999999999887643

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.94  E-value=1.6e-26  Score=165.98  Aligned_cols=150  Identities=20%  Similarity=0.197  Sum_probs=111.3

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC-cccccc--ccceeEEEEEEcCeEEEEEEcCCCCCCh----------hhHHhh
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIP--TIGFNVETVEYKNVSFTVWDVGGQDKIR----------PLWRHY   80 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~----------~~~~~~   80 (180)
                      +++++|+++|++|||||||+|+|++.. .....+  |++.....+...+..+.+|||||...+.          .....+
T Consensus         1 M~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~   80 (274)
T 3i8s_A            1 MKKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (274)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence            357999999999999999999999877 333334  4455566677778899999999987765          223334


Q ss_pred             c--cccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC----CHhHHHhHhCCCccCCcceEE
Q 030289           81 F--QNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM----SVSEVTDKLGLHSLRQRRWYI  154 (180)
Q Consensus        81 ~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~  154 (180)
                      +  +++|++++|+|+++.++...+..++..       .++|+++|+||+|+.+..    ..+.+...+        ++++
T Consensus        81 ~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~-------~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l--------g~~~  145 (274)
T 3i8s_A           81 ILSGDADLLINVVDASNLERNLYLTLQLLE-------LGIPCIVALNMLDIAEKQNIRIEIDALSARL--------GCPV  145 (274)
T ss_dssp             HHHTCCSEEEEEEEGGGHHHHHHHHHHHHH-------HTCCEEEEEECHHHHHHTTEEECHHHHHHHH--------TSCE
T ss_pred             HhhcCCCEEEEEecCCChHHHHHHHHHHHh-------cCCCEEEEEECccchhhhhHHHHHHHHHHhc--------CCCE
Confidence            3  689999999999876544443333332       268999999999986432    233344333        3579


Q ss_pred             EEeeccCCCChHHHHHHHHHHhhh
Q 030289          155 QAACATSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       155 ~~~Sa~~~~~i~~~~~~l~~~~~~  178 (180)
                      +++||++|.|++++++++.+.+.+
T Consensus       146 i~~SA~~g~gi~el~~~i~~~~~~  169 (274)
T 3i8s_A          146 IPLVSTRGRGIEALKLAIDRYKAN  169 (274)
T ss_dssp             EECCCGGGHHHHHHHHHHHTCCCC
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHhc
Confidence            999999999999999999887653

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.94  E-value=1.2e-26  Score=180.58  Aligned_cols=158  Identities=20%  Similarity=0.278  Sum_probs=111.9

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEEEE--------E----cCeEEEEEEcCCCCCChhhHH
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVE--------Y----KNVSFTVWDVGGQDKIRPLWR   78 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~~~--------~----~~~~~~i~D~~G~~~~~~~~~   78 (180)
                      .+.+.+||+++|.+|||||||+|+|++.. ...+.+|++..+.+..        .    .+..+.+||+||++.+.....
T Consensus        37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~  116 (535)
T 3dpu_A           37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ  116 (535)
T ss_dssp             BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence            35778999999999999999999999887 4455678887776542        1    258999999999999999999


Q ss_pred             hhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEE
Q 030289           79 HYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQA  156 (180)
Q Consensus        79 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  156 (180)
                      .+++.+|++++|+|+++.+   ....|+..+...  .++.|+++|+||+|+.+...  .++....     +...+.++++
T Consensus       117 ~~l~~~d~ii~V~D~s~~~---~~~~~~~~l~~~--~~~~pvilV~NK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~  186 (535)
T 3dpu_A          117 FFMTRSSVYMLLLDSRTDS---NKHYWLRHIEKY--GGKSPVIVVMNKIDENPSYNIEQKKINER-----FPAIENRFHR  186 (535)
T ss_dssp             HHHHSSEEEEEEECGGGGG---GHHHHHHHHHHH--SSSCCEEEEECCTTTCTTCCCCHHHHHHH-----CGGGTTCEEE
T ss_pred             HHccCCcEEEEEEeCCCch---hHHHHHHHHHHh--CCCCCEEEEEECCCcccccccCHHHHHHH-----HHhcCCceEE
Confidence            9999999999999997654   445566555443  24689999999999976443  3333322     2233457999


Q ss_pred             eeccCCCChHHHHHHHHHHhhhc
Q 030289          157 ACATSGQGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       157 ~Sa~~~~~i~~~~~~l~~~~~~~  179 (180)
                      +||++|.|++++++.+.+.+.+.
T Consensus       187 vSA~~g~gi~eL~~~l~~~~~~~  209 (535)
T 3dpu_A          187 ISCKNGDGVESIAKSLKSAVLHP  209 (535)
T ss_dssp             CCC-----CTTHHHHHHHHHTCT
T ss_pred             EecCcccCHHHHHHHHHHHHhcc
Confidence            99999999999999999987653

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.94  E-value=3.6e-26  Score=162.54  Aligned_cols=144  Identities=17%  Similarity=0.136  Sum_probs=109.2

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCC-cccccc--ccceeEEEEEEcCeEEEEEEcCCCCCChh----------hHHhhc--
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGE-IVTTIP--TIGFNVETVEYKNVSFTVWDVGGQDKIRP----------LWRHYF--   81 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~-~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~~--   81 (180)
                      .+|+++|++|||||||+|+|.+.. .....|  |++.....+...+..+.+|||||...+..          ....++  
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~   81 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID   81 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence            489999999999999999999876 333334  44466667777889999999999877653          466677  


Q ss_pred             cccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC----CHhHHHhHhCCCccCCcceEEEEe
Q 030289           82 QNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM----SVSEVTDKLGLHSLRQRRWYIQAA  157 (180)
Q Consensus        82 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  157 (180)
                      .++|++++|+|+++.++...+..   .+..    .++|+++|+||+|+.+..    ....+...+        +++++++
T Consensus        82 ~~~d~vi~VvDas~~~~~~~l~~---~l~~----~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~l--------g~~vi~~  146 (256)
T 3iby_A           82 LEYDCIINVIDACHLERHLYLTS---QLFE----LGKPVVVALNMMDIAEHRGISIDTEKLESLL--------GCSVIPI  146 (256)
T ss_dssp             SCCSEEEEEEEGGGHHHHHHHHH---HHTT----SCSCEEEEEECHHHHHHTTCEECHHHHHHHH--------CSCEEEC
T ss_pred             CCCCEEEEEeeCCCchhHHHHHH---HHHH----cCCCEEEEEEChhcCCcCCcHHHHHHHHHHc--------CCCEEEE
Confidence            88999999999987654443333   3322    378999999999975432    233344443        3579999


Q ss_pred             eccCCCChHHHHHHHHHH
Q 030289          158 CATSGQGLYEGLDWLSSN  175 (180)
Q Consensus       158 Sa~~~~~i~~~~~~l~~~  175 (180)
                      ||++|.|++++++++.+.
T Consensus       147 SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          147 QAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             BGGGTBSHHHHHHHHHTC
T ss_pred             ECCCCCCHHHHHHHHHhh
Confidence            999999999999999876

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.94  E-value=1.7e-26  Score=175.77  Aligned_cols=159  Identities=13%  Similarity=0.114  Sum_probs=114.1

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCCc--ccccc--ccceeEEEEEEcCeEEEEEEcCCC----------CCChhhHH-h
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNVSFTVWDVGGQ----------DKIRPLWR-H   79 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~~-~   79 (180)
                      ..+||+++|++|||||||+|+|++...  ....+  |.+.....+..++..+.+|||||+          +.|..... .
T Consensus       174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~  253 (436)
T 2hjg_A          174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK  253 (436)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHH
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHH
Confidence            568999999999999999999998773  33333  444555567778889999999997          33443333 5


Q ss_pred             hccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEe
Q 030289           80 YFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAA  157 (180)
Q Consensus        80 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  157 (180)
                      +++++|++++|+|++++.+.+.. .|+..+.    ..++|+++|+||+|+.+...  .+++.+.+........+++++++
T Consensus       254 ~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~----~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  328 (436)
T 2hjg_A          254 AIDRSEVVAVVLDGEEGIIEQDK-RIAGYAH----EAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFM  328 (436)
T ss_dssp             HHHHCSEEEEEEETTTCCCHHHH-HHHHHHH----HTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred             HHHhCCEEEEEEcCCcCCcHHHH-HHHHHHH----HcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEE
Confidence            78899999999999987776554 4554443    25789999999999976543  23333332222222345689999


Q ss_pred             eccCCCChHHHHHHHHHHhhh
Q 030289          158 CATSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       158 Sa~~~~~i~~~~~~l~~~~~~  178 (180)
                      ||++|.|++++|+.+.+.+.+
T Consensus       329 SA~tg~~v~~l~~~i~~~~~~  349 (436)
T 2hjg_A          329 SALTKKRIHTLMPAIIKASEN  349 (436)
T ss_dssp             CTTTCTTGGGHHHHHHHHHHH
T ss_pred             ecccCCCHHHHHHHHHHHHHH
Confidence            999999999999999887754

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.94  E-value=6.1e-26  Score=162.49  Aligned_cols=147  Identities=18%  Similarity=0.228  Sum_probs=108.3

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCC-cccccc--ccceeEEEEEEcCeEEEEEEcCCCCCCh------hhHHhhcc--c
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGE-IVTTIP--TIGFNVETVEYKNVSFTVWDVGGQDKIR------PLWRHYFQ--N   83 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~--~   83 (180)
                      ..++|+++|++|||||||+|+|++.. .....|  |.......+.. +..+.+|||||+..+.      .....++.  +
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~   80 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQR   80 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCC
Confidence            36799999999999999999999865 344344  33333333433 6789999999998775      45666775  5


Q ss_pred             cCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC----CCHhHHHhHhCCCccCCcceEEEEeec
Q 030289           84 THGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA----MSVSEVTDKLGLHSLRQRRWYIQAACA  159 (180)
Q Consensus        84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (180)
                      +|++++|+|+++.++   ...|...+..    .++|+++|+||+|+...    .....+...+        +++++++||
T Consensus        81 ~d~vi~V~D~t~~e~---~~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l--------g~~vi~~SA  145 (272)
T 3b1v_A           81 ADSILNVVDATNLER---NLYLTTQLIE----TGIPVTIALNMIDVLDGQGKKINVDKLSYHL--------GVPVVATSA  145 (272)
T ss_dssp             CSEEEEEEEGGGHHH---HHHHHHHHHH----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHH--------TSCEEECBT
T ss_pred             CCEEEEEecCCchHh---HHHHHHHHHh----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHc--------CCCEEEEEc
Confidence            999999999987544   3445555433    47899999999997532    2233444443        357999999


Q ss_pred             cCCCChHHHHHHHHHHhh
Q 030289          160 TSGQGLYEGLDWLSSNVS  177 (180)
Q Consensus       160 ~~~~~i~~~~~~l~~~~~  177 (180)
                      ++|.|++++|+++.+.+.
T Consensus       146 ~~g~gi~el~~~i~~~~~  163 (272)
T 3b1v_A          146 LKQTGVDQVVKKAAHTTT  163 (272)
T ss_dssp             TTTBSHHHHHHHHHHSCT
T ss_pred             cCCCCHHHHHHHHHHHHh
Confidence            999999999999988664

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.93  E-value=4.5e-25  Score=158.35  Aligned_cols=151  Identities=21%  Similarity=0.238  Sum_probs=113.4

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCc-ccccc--ccceeEEEEEEcCeEEEEEEcCCCCCChh------hHHhhc--c
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIP--TIGFNVETVEYKNVSFTVWDVGGQDKIRP------LWRHYF--Q   82 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~--~   82 (180)
                      ++.++|+++|++|||||||+|+|++... ....+  |.+.....+...+..+.+|||||...+..      ....++  .
T Consensus         1 m~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   80 (271)
T 3k53_A            1 MVLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDG   80 (271)
T ss_dssp             CCCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence            3578999999999999999999998773 33334  44455566777888999999999887755      566666  6


Q ss_pred             ccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC----CCCHhHHHhHhCCCccCCcceEEEEee
Q 030289           83 NTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN----AMSVSEVTDKLGLHSLRQRRWYIQAAC  158 (180)
Q Consensus        83 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~S  158 (180)
                      ++|++++|+|+++.+   ....++..+...   ...|+++|+||+|+.+    ......+.+.++        ++++++|
T Consensus        81 ~~d~vi~v~D~~~~~---~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~~~~~S  146 (271)
T 3k53_A           81 NADVIVDIVDSTCLM---RNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKELG--------VPVIPTN  146 (271)
T ss_dssp             CCSEEEEEEEGGGHH---HHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHS--------SCEEECB
T ss_pred             CCcEEEEEecCCcch---hhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHHcC--------CcEEEEE
Confidence            899999999998653   334444444432   2389999999999643    123444444443        5799999


Q ss_pred             ccCCCChHHHHHHHHHHhhh
Q 030289          159 ATSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       159 a~~~~~i~~~~~~l~~~~~~  178 (180)
                      |++|.|++++++.+.+.+.+
T Consensus       147 a~~g~gi~~l~~~i~~~~~~  166 (271)
T 3k53_A          147 AKKGEGVEELKRMIALMAEG  166 (271)
T ss_dssp             GGGTBTHHHHHHHHHHHHHT
T ss_pred             eCCCCCHHHHHHHHHHHHhc
Confidence            99999999999999988754

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.93  E-value=2.1e-27  Score=165.21  Aligned_cols=118  Identities=25%  Similarity=0.339  Sum_probs=96.3

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCCccc----cccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccc----c
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQN----T   84 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~----~   84 (180)
                      ..+.++|+++|++|+|||||+++|.+..+..    +.++++..+     ....+.+|||||++.++..+..+++.    +
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   83 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-----DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV   83 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-----GGSSCEEEECCCCGGGTHHHHHHHHHHGGGE
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-----eCceEEEEECCCcHHHHHHHHHHHHhccccC
Confidence            4678999999999999999999999877432    334443322     66789999999999998888888887    8


Q ss_pred             CEEEEEEECC-ChhhHHHHHHHHHHHhccc---ccCCCeEEEEEecCCCCCCCCH
Q 030289           85 HGLIFVVDSN-DRERIGEAKDELHRMLSED---ELREAVLLVFANKQDLPNAMSV  135 (180)
Q Consensus        85 ~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~---~~~~~~iiiv~nK~D~~~~~~~  135 (180)
                      |++++|+|++ +++++.....|+..+....   ...++|+++|+||+|+.+....
T Consensus        84 ~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~  138 (218)
T 1nrj_B           84 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPP  138 (218)
T ss_dssp             EEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred             CEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCH
Confidence            9999999999 8889999999988886542   1257999999999999876553

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.93  E-value=1.5e-25  Score=171.29  Aligned_cols=151  Identities=20%  Similarity=0.211  Sum_probs=99.5

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCC--cccccc--ccceeEEEEEEcCeEEEEEEcCCCCCChhh--------HHhh
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIP--TIGFNVETVEYKNVSFTVWDVGGQDKIRPL--------WRHY   80 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~--~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~   80 (180)
                      .+..++|+++|++|||||||+|+|++..  .....+  |.+.....+...+..+.+|||||...+...        ...+
T Consensus       230 ~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~  309 (476)
T 3gee_A          230 VSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMK  309 (476)
T ss_dssp             HHHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CC
T ss_pred             hcCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence            3567999999999999999999999875  334333  455666778889999999999998766533        3446


Q ss_pred             ccccCEEEEEEECCChhhHH---HHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhH--HHhHhCCCccCCcceEEE
Q 030289           81 FQNTHGLIFVVDSNDRERIG---EAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSE--VTDKLGLHSLRQRRWYIQ  155 (180)
Q Consensus        81 ~~~~~~~i~v~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~  155 (180)
                      ++++|++++|+|++++.+.+   ....|+..+      .+.|+++|+||+|+.+....+.  +...        ...+++
T Consensus       310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l------~~~piIvV~NK~Dl~~~~~~~~~~l~~~--------~~~~~i  375 (476)
T 3gee_A          310 MAEADLILYLLDLGTERLDDELTEIRELKAAH------PAAKFLTVANKLDRAANADALIRAIADG--------TGTEVI  375 (476)
T ss_dssp             CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC------TTSEEEEEEECTTSCTTTHHHHHHHHHH--------HTSCEE
T ss_pred             cccCCEEEEEEECCCCcchhhhHHHHHHHHhc------CCCCEEEEEECcCCCCccchhHHHHHhc--------CCCceE
Confidence            78999999999999877654   333343332      2689999999999987554322  1111        013689


Q ss_pred             EeeccCCCChHHHHHHHHHHhh
Q 030289          156 AACATSGQGLYEGLDWLSSNVS  177 (180)
Q Consensus       156 ~~Sa~~~~~i~~~~~~l~~~~~  177 (180)
                      ++||++|.|++++++++.+.+.
T Consensus       376 ~vSAktg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          376 GISALNGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             ECBTTTTBSHHHHHHHHTHHHH
T ss_pred             EEEECCCCCHHHHHHHHHHHHh
Confidence            9999999999999999998875

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.93  E-value=5.2e-25  Score=160.45  Aligned_cols=135  Identities=22%  Similarity=0.398  Sum_probs=111.0

Q ss_pred             ccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECC----------ChhhHHHHHHHHHHHhcccc
Q 030289           45 IPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSN----------DRERIGEAKDELHRMLSEDE  114 (180)
Q Consensus        45 ~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~  114 (180)
                      .||+|+....+..+++.+++||++|++.++..|..++++++++++|+|++          +..+++....|+..+.....
T Consensus       152 ~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~  231 (327)
T 3ohm_A          152 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW  231 (327)
T ss_dssp             CCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGG
T ss_pred             CceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhc
Confidence            45788888889999999999999999999999999999999999999654          67889999999999988777


Q ss_pred             cCCCeEEEEEecCCCCCC------------------CCHhHHHhH-----hCCCccCCcceEEEEeeccCCCChHHHHHH
Q 030289          115 LREAVLLVFANKQDLPNA------------------MSVSEVTDK-----LGLHSLRQRRWYIQAACATSGQGLYEGLDW  171 (180)
Q Consensus       115 ~~~~~iiiv~nK~D~~~~------------------~~~~~~~~~-----~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  171 (180)
                      ..++|+++++||+|+..+                  .+.++..+.     ........+++.+++|||+++.||+++|..
T Consensus       232 ~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~  311 (327)
T 3ohm_A          232 FQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAA  311 (327)
T ss_dssp             GTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHH
T ss_pred             cCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHH
Confidence            788999999999997541                  233332221     222233456789999999999999999999


Q ss_pred             HHHHhhhc
Q 030289          172 LSSNVSAK  179 (180)
Q Consensus       172 l~~~~~~~  179 (180)
                      +.+.+.++
T Consensus       312 v~~~Il~~  319 (327)
T 3ohm_A          312 VKDTILQL  319 (327)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            99988764

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.93  E-value=4.2e-26  Score=171.82  Aligned_cols=155  Identities=19%  Similarity=0.148  Sum_probs=111.3

Q ss_pred             hcccCccEEEEEcCCCCChHHHHHHhhcCCcc--cc--ccccceeEEEEEEcCe-EEEEEEcCCCCCChhh-------HH
Q 030289           11 LFARKEMRILMVGLDAAGKTTILYKLKLGEIV--TT--IPTIGFNVETVEYKNV-SFTVWDVGGQDKIRPL-------WR   78 (180)
Q Consensus        11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~--~~--~~t~~~~~~~~~~~~~-~~~i~D~~G~~~~~~~-------~~   78 (180)
                      ......++|+|+|+.|+|||||+|+|++....  ..  ..|.+.....+...+. .+.+|||||+..+...       +.
T Consensus        29 ~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~  108 (423)
T 3qq5_A           29 PDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKAR  108 (423)
T ss_dssp             ---CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHH
Confidence            34567899999999999999999999987732  22  2356666777777655 9999999998766433       56


Q ss_pred             hhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEee
Q 030289           79 HYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAAC  158 (180)
Q Consensus        79 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  158 (180)
                      .++.++|++++|+|+...   +....|+..+..    .++|+++|+||+|+...... +....+.    ...+++++++|
T Consensus       109 ~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~----~~~piIvV~NK~Dl~~~~~~-~~~~~l~----~~~g~~v~~vS  176 (423)
T 3qq5_A          109 RVFYRADCGILVTDSAPT---PYEDDVVNLFKE----MEIPFVVVVNKIDVLGEKAE-ELKGLYE----SRYEAKVLLVS  176 (423)
T ss_dssp             HHHTSCSEEEEECSSSCC---HHHHHHHHHHHH----TTCCEEEECCCCTTTTCCCT-HHHHHSS----CCTTCCCCCCS
T ss_pred             HHHhcCCEEEEEEeCCCh---HHHHHHHHHHHh----cCCCEEEEEeCcCCCCccHH-HHHHHHH----HHcCCCEEEEE
Confidence            688899999999998333   233455554433    27899999999999876544 2233322    23456899999


Q ss_pred             ccCCCChHHHHHHHHHHhh
Q 030289          159 ATSGQGLYEGLDWLSSNVS  177 (180)
Q Consensus       159 a~~~~~i~~~~~~l~~~~~  177 (180)
                      |++|.|++++++++.+.+.
T Consensus       177 Aktg~gI~eL~~~L~~~l~  195 (423)
T 3qq5_A          177 ALQKKGFDDIGKTISEILP  195 (423)
T ss_dssp             SCCTTSTTTHHHHHHHHSC
T ss_pred             CCCCCCHHHHHHHHHHhhh
Confidence            9999999999999999874

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.93  E-value=1.9e-24  Score=160.67  Aligned_cols=158  Identities=16%  Similarity=0.181  Sum_probs=118.0

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCcc-c--cccccceeEEEEEEcCeEEEEEEcCCCCCCh---------hhHHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKNVSFTVWDVGGQDKIR---------PLWRHYF   81 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~-~--~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~   81 (180)
                      ...++|+++|++|||||||+|+|.+.... .  ...|.+.....+...+..+.+|||||.....         .....+.
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~  244 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR  244 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence            46789999999999999999999987722 1  2345666666677778899999999975431         2233445


Q ss_pred             cccCEEEEEEECCChh--hHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeec
Q 030289           82 QNTHGLIFVVDSNDRE--RIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACA  159 (180)
Q Consensus        82 ~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (180)
                      ..+|++++|+|+++..  +++....|+..+....  .+.|+++|+||+|+......++.....     ...+++++++||
T Consensus       245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~--~~~piilV~NK~Dl~~~~~~~~~~~~~-----~~~~~~~~~iSA  317 (357)
T 2e87_A          245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF--KDLPFLVVINKIDVADEENIKRLEKFV-----KEKGLNPIKISA  317 (357)
T ss_dssp             GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT--TTSCEEEEECCTTTCCHHHHHHHHHHH-----HHTTCCCEECBT
T ss_pred             hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc--CCCCEEEEEECcccCChHHHHHHHHHH-----HhcCCCeEEEeC
Confidence            5799999999998876  6777778877775432  278999999999997643333222211     123457999999


Q ss_pred             cCCCChHHHHHHHHHHhhh
Q 030289          160 TSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       160 ~~~~~i~~~~~~l~~~~~~  178 (180)
                      ++|+|++++++++.+.+..
T Consensus       318 ~~g~gi~~l~~~i~~~l~~  336 (357)
T 2e87_A          318 LKGTGIDLVKEEIIKTLRP  336 (357)
T ss_dssp             TTTBTHHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHH
Confidence            9999999999999988754

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.93  E-value=4.3e-25  Score=168.92  Aligned_cols=151  Identities=24%  Similarity=0.347  Sum_probs=115.2

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC--cccccc--ccceeEEEEEEcCeEEEEEEcCCCC-CCh--------hhHHhh
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIP--TIGFNVETVEYKNVSFTVWDVGGQD-KIR--------PLWRHY   80 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~--~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~-~~~--------~~~~~~   80 (180)
                      +..++|+++|.+|||||||+|+|++.+  .....+  |.++....+..++..+.+|||||.. .+.        .....+
T Consensus       241 r~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          241 NRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             HHCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             cCCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            345899999999999999999999875  333333  5567777888899999999999987 543        234568


Q ss_pred             ccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeecc
Q 030289           81 FQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACAT  160 (180)
Q Consensus        81 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  160 (180)
                      ++++|++++|+|++++.+.+... .+. .+     .+.|+++|+||+|+.+....+++.....      .+.+++++||+
T Consensus       321 ~~~aD~vl~VvD~s~~~s~~~~~-il~-~l-----~~~piivV~NK~DL~~~~~~~~~~~~~~------~~~~~i~iSAk  387 (482)
T 1xzp_A          321 IEKADIVLFVLDASSPLDEEDRK-ILE-RI-----KNKRYLVVINKVDVVEKINEEEIKNKLG------TDRHMVKISAL  387 (482)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHHH-HHH-HH-----TTSSEEEEEEECSSCCCCCHHHHHHHHT------CSTTEEEEEGG
T ss_pred             hhcccEEEEEecCCCCCCHHHHH-HHH-Hh-----cCCCEEEEEECcccccccCHHHHHHHhc------CCCcEEEEECC
Confidence            89999999999998877665432 222 22     3679999999999976544444443322      12468999999


Q ss_pred             CCCChHHHHHHHHHHhh
Q 030289          161 SGQGLYEGLDWLSSNVS  177 (180)
Q Consensus       161 ~~~~i~~~~~~l~~~~~  177 (180)
                      +|.|++++++++.+.+.
T Consensus       388 tg~Gi~eL~~~l~~~~~  404 (482)
T 1xzp_A          388 KGEGLEKLEESIYRETQ  404 (482)
T ss_dssp             GTCCHHHHHHHHHHHTH
T ss_pred             CCCCHHHHHHHHHHHHh
Confidence            99999999999998754

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.93  E-value=1.5e-25  Score=165.45  Aligned_cols=135  Identities=23%  Similarity=0.428  Sum_probs=109.6

Q ss_pred             ccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCC----------hhhHHHHHHHHHHHhcccc
Q 030289           45 IPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSND----------RERIGEAKDELHRMLSEDE  114 (180)
Q Consensus        45 ~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~  114 (180)
                      .+|+|+....+..+++.+++||++|++.++..|..++++++++|+|+|+++          ..++.....|+..+.....
T Consensus       178 ~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~  257 (353)
T 1cip_A          178 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW  257 (353)
T ss_dssp             CCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred             CceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcc
Confidence            357778888888899999999999999999999999999999999999998          4679999999999988766


Q ss_pred             cCCCeEEEEEecCCCCC-----------------CCCHhHHHhHh-----CCCcc-CCcceEEEEeeccCCCChHHHHHH
Q 030289          115 LREAVLLVFANKQDLPN-----------------AMSVSEVTDKL-----GLHSL-RQRRWYIQAACATSGQGLYEGLDW  171 (180)
Q Consensus       115 ~~~~~iiiv~nK~D~~~-----------------~~~~~~~~~~~-----~~~~~-~~~~~~~~~~Sa~~~~~i~~~~~~  171 (180)
                      ..++|+++++||+|+..                 +.+.++.....     .+... ...++.+++|||+++.||+++|.+
T Consensus       258 ~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~  337 (353)
T 1cip_A          258 FTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDA  337 (353)
T ss_dssp             GTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred             ccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHH
Confidence            67899999999999852                 12333332221     11111 245789999999999999999999


Q ss_pred             HHHHhhhc
Q 030289          172 LSSNVSAK  179 (180)
Q Consensus       172 l~~~~~~~  179 (180)
                      +.+.+.++
T Consensus       338 v~~~i~~~  345 (353)
T 1cip_A          338 VTDVIIKN  345 (353)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99987653

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.92  E-value=1.7e-25  Score=171.12  Aligned_cols=160  Identities=15%  Similarity=0.175  Sum_probs=112.7

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC--cccccc--ccceeEEEEEEcCeEEEEEEcCC----------CCCChhhHH-
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIP--TIGFNVETVEYKNVSFTVWDVGG----------QDKIRPLWR-   78 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~--~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~~-   78 (180)
                      ...+||+++|.+|+|||||+|+|++..  .....+  |.+.....+...+..+.+|||||          ++.+..... 
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~  272 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL  272 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence            457999999999999999999999765  333333  44445566777888999999999          566665544 


Q ss_pred             hhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEE
Q 030289           79 HYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQA  156 (180)
Q Consensus        79 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  156 (180)
                      .+++++|++++|+|+++.-.  ....++...+..   .++|+++|+||+|+.+...  .++..+...........+++++
T Consensus       273 ~~~~~ad~~llviD~~~~~~--~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (456)
T 4dcu_A          273 KAIDRSEVVAVVLDGEEGII--EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF  347 (456)
T ss_dssp             HHHHHCSEEEEEEETTTCCC--HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred             HHHhhCCEEEEEEeCCCCcC--HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEE
Confidence            47889999999999986433  233333333222   5789999999999976432  2333332221111122468999


Q ss_pred             eeccCCCChHHHHHHHHHHhhh
Q 030289          157 ACATSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       157 ~Sa~~~~~i~~~~~~l~~~~~~  178 (180)
                      +||++|.|++++|+.+.+.+.+
T Consensus       348 ~SA~~g~gv~~l~~~i~~~~~~  369 (456)
T 4dcu_A          348 MSALTKKRIHTLMPAIIKASEN  369 (456)
T ss_dssp             CCTTTCTTGGGHHHHHHHHHHH
T ss_pred             EcCCCCcCHHHHHHHHHHHHHH
Confidence            9999999999999999988754

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.92  E-value=3.1e-25  Score=163.21  Aligned_cols=157  Identities=22%  Similarity=0.284  Sum_probs=117.8

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCCc--ccc-ccccceeEEEEEEcC-eEEEEEEcCCC----CCChhhHHhhcc---ccC
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGEI--VTT-IPTIGFNVETVEYKN-VSFTVWDVGGQ----DKIRPLWRHYFQ---NTH   85 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~~--~~~-~~t~~~~~~~~~~~~-~~~~i~D~~G~----~~~~~~~~~~~~---~~~   85 (180)
                      .+|+++|.+|||||||+|+|++.+.  ..+ ..|.......+...+ ..+.+|||||.    ..+..+...+++   +++
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d  238 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR  238 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence            4799999999999999999998762  222 246667777777765 89999999993    344444444544   599


Q ss_pred             EEEEEEECCC---hhhHHHHHHHHHHHhccc-ccCCCeEEEEEecCCCCCCCC-HhHHHhHhCCCccCCcceEEEEeecc
Q 030289           86 GLIFVVDSND---RERIGEAKDELHRMLSED-ELREAVLLVFANKQDLPNAMS-VSEVTDKLGLHSLRQRRWYIQAACAT  160 (180)
Q Consensus        86 ~~i~v~d~~~---~~~~~~~~~~~~~~~~~~-~~~~~~iiiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~  160 (180)
                      ++++|+|+++   +++++....|...+.... ...++|+++|+||+|+..... .+++.+.+..      ..+++++||+
T Consensus       239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~------~~~v~~iSA~  312 (342)
T 1lnz_A          239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTD------DYPVFPISAV  312 (342)
T ss_dssp             EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCS------CCCBCCCSSC
T ss_pred             EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhc------CCCEEEEECC
Confidence            9999999998   788888888887776542 135789999999999976321 2233333321      1468999999


Q ss_pred             CCCChHHHHHHHHHHhhhc
Q 030289          161 SGQGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       161 ~~~~i~~~~~~l~~~~~~~  179 (180)
                      ++.|+++++++|.+.+.+.
T Consensus       313 tg~gi~eL~~~l~~~l~~~  331 (342)
T 1lnz_A          313 TREGLRELLFEVANQLENT  331 (342)
T ss_dssp             CSSTTHHHHHHHHHHHTSC
T ss_pred             CCcCHHHHHHHHHHHHhhC
Confidence            9999999999999988653

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.92  E-value=8.5e-25  Score=161.92  Aligned_cols=132  Identities=24%  Similarity=0.393  Sum_probs=100.2

Q ss_pred             ccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCC----------hhhHHHHHHHHHHHhcccccC
Q 030289           47 TIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSND----------RERIGEAKDELHRMLSEDELR  116 (180)
Q Consensus        47 t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~  116 (180)
                      |+|+....+..+++.+.+|||+|++.++..|..++++++++|+|+|+++          ..++.....|+..+.......
T Consensus       188 T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~  267 (362)
T 1zcb_A          188 TKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS  267 (362)
T ss_dssp             CSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred             ccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhC
Confidence            5677777788899999999999999999999999999999999999998          679999999999998876667


Q ss_pred             CCeEEEEEecCCCCC------------------CCCHhHHHhHh-----CCCccC-CcceEEEEeeccCCCChHHHHHHH
Q 030289          117 EAVLLVFANKQDLPN------------------AMSVSEVTDKL-----GLHSLR-QRRWYIQAACATSGQGLYEGLDWL  172 (180)
Q Consensus       117 ~~~iiiv~nK~D~~~------------------~~~~~~~~~~~-----~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~l  172 (180)
                      ++|+++++||+|+..                  +.+.++.....     .+.... ..++.+++|||+++.||+++|.++
T Consensus       268 ~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v  347 (362)
T 1zcb_A          268 NVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDV  347 (362)
T ss_dssp             TSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHH
Confidence            899999999999852                  13334333221     221111 456789999999999999999999


Q ss_pred             HHHhhh
Q 030289          173 SSNVSA  178 (180)
Q Consensus       173 ~~~~~~  178 (180)
                      .+.+.+
T Consensus       348 ~~~i~~  353 (362)
T 1zcb_A          348 KDTILH  353 (362)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988765

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.92  E-value=1.1e-24  Score=164.21  Aligned_cols=161  Identities=14%  Similarity=0.069  Sum_probs=113.6

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhhcCCccccc----cccc--------------e-----eEEEEEEcCeEEEEEEcC
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLKLGEIVTTI----PTIG--------------F-----NVETVEYKNVSFTVWDVG   68 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~----~t~~--------------~-----~~~~~~~~~~~~~i~D~~   68 (180)
                      ..++.+||+++|++++|||||+|+|++.......    .+.+              .     ...........+.+||||
T Consensus         4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP   83 (403)
T 3sjy_A            4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP   83 (403)
T ss_dssp             CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence            3567899999999999999999999874311100    0000              0     000001122689999999


Q ss_pred             CCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhH----HHhHhCC
Q 030289           69 GQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSE----VTDKLGL  144 (180)
Q Consensus        69 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~----~~~~~~~  144 (180)
                      |++.|...+..++..+|++++|+|+++..+......++......   ...|+++|+||+|+.+.....+    +.+.+..
T Consensus        84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~  160 (403)
T 3sjy_A           84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG  160 (403)
T ss_dssp             CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred             CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999876566666666544322   2358999999999986432222    2222211


Q ss_pred             CccCCcceEEEEeeccCCCChHHHHHHHHHHhh
Q 030289          145 HSLRQRRWYIQAACATSGQGLYEGLDWLSSNVS  177 (180)
Q Consensus       145 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  177 (180)
                      .  ....++++++||++|.|+++++++|.+.+.
T Consensus       161 ~--~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~  191 (403)
T 3sjy_A          161 T--WAENVPIIPVSALHKINIDSLIEGIEEYIK  191 (403)
T ss_dssp             S--TTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             h--CCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence            1  123568999999999999999999998764

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.92  E-value=2.3e-24  Score=164.16  Aligned_cols=151  Identities=21%  Similarity=0.225  Sum_probs=104.4

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCC--cccccc--ccceeEEEEEEcCeEEEEEEcCCCCCC---------hhhHHhhccc
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGE--IVTTIP--TIGFNVETVEYKNVSFTVWDVGGQDKI---------RPLWRHYFQN   83 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~--~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~~~   83 (180)
                      .+|+++|.+|||||||+|+|++.+  .....|  |.+..+..+...+..+.+|||||.+..         ...+..++++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~   81 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE   81 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence            479999999999999999999876  233333  555667788888999999999997642         3456778999


Q ss_pred             cCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcce-EEEEeeccCC
Q 030289           84 THGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRW-YIQAACATSG  162 (180)
Q Consensus        84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~  162 (180)
                      +|++++|+|+.+.-+.  ...++..++..   .++|+++|+||+|+.... ..+....+     ...+. +++++||++|
T Consensus        82 ad~il~V~D~~~~~~~--~d~~i~~~l~~---~~~p~ilv~NK~D~~~~~-~~~~~~~~-----~~lg~~~~~~iSA~~g  150 (439)
T 1mky_A           82 ADLVLFVVDGKRGITK--EDESLADFLRK---STVDTILVANKAENLREF-EREVKPEL-----YSLGFGEPIPVSAEHN  150 (439)
T ss_dssp             CSEEEEEEETTTCCCH--HHHHHHHHHHH---HTCCEEEEEESCCSHHHH-HHHTHHHH-----GGGSSCSCEECBTTTT
T ss_pred             CCEEEEEEECCCCCCH--HHHHHHHHHHH---cCCCEEEEEeCCCCcccc-HHHHHHHH-----HhcCCCCEEEEeccCC
Confidence            9999999999765332  22333333332   368999999999985321 11110111     12233 5799999999


Q ss_pred             CChHHHHHHHHHHhhh
Q 030289          163 QGLYEGLDWLSSNVSA  178 (180)
Q Consensus       163 ~~i~~~~~~l~~~~~~  178 (180)
                      .|++++++++.+.+.+
T Consensus       151 ~gv~~L~~~i~~~l~~  166 (439)
T 1mky_A          151 INLDTMLETIIKKLEE  166 (439)
T ss_dssp             BSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhccc
Confidence            9999999999988753

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.92  E-value=1.4e-24  Score=158.66  Aligned_cols=134  Identities=22%  Similarity=0.338  Sum_probs=108.1

Q ss_pred             ccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECC----------ChhhHHHHHHHHHHHhcccc
Q 030289           45 IPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSN----------DRERIGEAKDELHRMLSEDE  114 (180)
Q Consensus        45 ~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~  114 (180)
                      .+|+|+....+..+++.+++||++|++.++..|..++++++++|+|+|++          +..++.....|+..++....
T Consensus       146 ~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~  225 (340)
T 4fid_A          146 TKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEF  225 (340)
T ss_dssp             CCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGG
T ss_pred             cceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhc
Confidence            45788888889999999999999999999999999999999999999998          67899999999999988777


Q ss_pred             cCCCeEEEEEecCCCCCC-----------------CCHhHHH----hHh-------CCCccCC-----------cceEEE
Q 030289          115 LREAVLLVFANKQDLPNA-----------------MSVSEVT----DKL-------GLHSLRQ-----------RRWYIQ  155 (180)
Q Consensus       115 ~~~~~iiiv~nK~D~~~~-----------------~~~~~~~----~~~-------~~~~~~~-----------~~~~~~  155 (180)
                      ..++|+++++||+|+..+                 .+.++..    ..+       .......           +.+.++
T Consensus       226 ~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h  305 (340)
T 4fid_A          226 LKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTN  305 (340)
T ss_dssp             GTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEE
T ss_pred             cCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEE
Confidence            788999999999997541                 1222221    111       1111222           468999


Q ss_pred             EeeccCCCChHHHHHHHHHHhhh
Q 030289          156 AACATSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       156 ~~Sa~~~~~i~~~~~~l~~~~~~  178 (180)
                      +|||++..||+.+|..+.+.+.+
T Consensus       306 ~TsA~dt~nv~~vF~~v~~~Il~  328 (340)
T 4fid_A          306 PTNATDGSNIKRVFMLAVDVIMK  328 (340)
T ss_dssp             EECTTCHHHHHHHHHHHHHHHHH
T ss_pred             EEEeeCcHHHHHHHHHHHHHHHH
Confidence            99999999999999999988754

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.91  E-value=9e-25  Score=166.23  Aligned_cols=150  Identities=21%  Similarity=0.266  Sum_probs=102.0

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCCcccccc----ccceeEEEEEEcCeEEEEEEcCCCC--------CChhhHHhhccc
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGEIVTTIP----TIGFNVETVEYKNVSFTVWDVGGQD--------KIRPLWRHYFQN   83 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~~   83 (180)
                      ..+|+++|.+|||||||+|+|.+.......+    |.+..+..+...+..+.+|||||..        .+...+..+++.
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~   82 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE   82 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence            4799999999999999999999876332222    3344455555577899999999986        455667888999


Q ss_pred             cCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcce-EEEEeeccCC
Q 030289           84 THGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRW-YIQAACATSG  162 (180)
Q Consensus        84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~  162 (180)
                      +|++++|+|+.+..+.  ...++..++..   .++|+++|+||+|+.+...  +     ... +...+. .++++||++|
T Consensus        83 ad~il~vvD~~~~~~~--~d~~~~~~l~~---~~~pvilv~NK~D~~~~~~--~-----~~~-~~~lg~~~~~~iSA~~g  149 (436)
T 2hjg_A           83 ADVIIFMVNGREGVTA--ADEEVAKILYR---TKKPVVLAVNKLDNTEMRA--N-----IYD-FYSLGFGEPYPISGTHG  149 (436)
T ss_dssp             CSEEEEEEETTTCSCH--HHHHHHHHHTT---CCSCEEEEEECCCC-------C-----CCS-SGGGSSCCCEECBTTTT
T ss_pred             CCEEEEEEeCCCCCCH--HHHHHHHHHHH---cCCCEEEEEECccCccchh--h-----HHH-HHHcCCCCeEEEeCcCC
Confidence            9999999999876543  23455555443   5789999999999875321  0     011 112233 6899999999


Q ss_pred             CChHHHHHHHHHHhhh
Q 030289          163 QGLYEGLDWLSSNVSA  178 (180)
Q Consensus       163 ~~i~~~~~~l~~~~~~  178 (180)
                      .|++++++++.+.+.+
T Consensus       150 ~gv~~L~~~i~~~l~~  165 (436)
T 2hjg_A          150 LGLGDLLDAVAEHFKN  165 (436)
T ss_dssp             BTHHHHHHHHHHTGGG
T ss_pred             CChHHHHHHHHHhcCc
Confidence            9999999999988763

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.91  E-value=1.5e-24  Score=165.21  Aligned_cols=151  Identities=19%  Similarity=0.247  Sum_probs=103.4

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC--cccccc--ccceeEEEEEEcCeEEEEEEcCCCCCChhh--------HHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIP--TIGFNVETVEYKNVSFTVWDVGGQDKIRPL--------WRHYF   81 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~--~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~   81 (180)
                      +..++|+++|++|||||||+|+|++..  .....+  |.++....+..++..+.+|||||...+...        ...++
T Consensus       222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~  301 (462)
T 3geh_A          222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAA  301 (462)
T ss_dssp             HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCC
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence            567899999999999999999999764  233333  344555667778999999999997655433        33467


Q ss_pred             cccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccC
Q 030289           82 QNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATS  161 (180)
Q Consensus        82 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  161 (180)
                      +.+|++++|+|++++.+... ..++..+      ...|+++|+||+|+.+......      ...+ ....+++++||++
T Consensus       302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l------~~~piivV~NK~Dl~~~~~~~~------~~~~-~~~~~~i~iSAkt  367 (462)
T 3geh_A          302 NTADLVLLTIDAATGWTTGD-QEIYEQV------KHRPLILVMNKIDLVEKQLITS------LEYP-ENITQIVHTAAAQ  367 (462)
T ss_dssp             CSCSEEEEEEETTTCSCHHH-HHHHHHH------TTSCEEEEEECTTSSCGGGSTT------CCCC-TTCCCEEEEBTTT
T ss_pred             hcCCEEEEEeccCCCCCHHH-HHHHHhc------cCCcEEEEEECCCCCcchhhHH------HHHh-ccCCcEEEEECCC
Confidence            88999999999987655433 3444433      2369999999999976432220      1111 1345799999999


Q ss_pred             CCChHHHHHHHHHHhhh
Q 030289          162 GQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       162 ~~~i~~~~~~l~~~~~~  178 (180)
                      |.|++++++++.+.+..
T Consensus       368 g~Gi~eL~~~i~~~~~~  384 (462)
T 3geh_A          368 KQGIDSLETAILEIVQT  384 (462)
T ss_dssp             TBSHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHhc
Confidence            99999999999998754

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1.2e-24  Score=148.58  Aligned_cols=125  Identities=27%  Similarity=0.379  Sum_probs=96.2

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCCccc----cccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccc----c
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQN----T   84 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~----~   84 (180)
                      ..+.++|+++|++|||||||+++|++.....    ..++....+     ....+.+|||||+..+...+..++..    +
T Consensus        45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  119 (193)
T 2ged_A           45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-----DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV  119 (193)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC-----CCTTCSEEEETTCCBSSCCHHHHHHHHGGGE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee-----cCCeEEEEECCCCchHHHHHHHHHHhhcccC
Confidence            4678999999999999999999999876332    223333222     56789999999999887777777776    8


Q ss_pred             CEEEEEEECC-ChhhHHHHHHHHHHHhcccc---cCCCeEEEEEecCCCCCCCCHhHHHhHh
Q 030289           85 HGLIFVVDSN-DRERIGEAKDELHRMLSEDE---LREAVLLVFANKQDLPNAMSVSEVTDKL  142 (180)
Q Consensus        85 ~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~---~~~~~iiiv~nK~D~~~~~~~~~~~~~~  142 (180)
                      |++++|+|++ +.+++.....|+..+.....   ..+.|+++|+||+|+.+....+++.+.+
T Consensus       120 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l  181 (193)
T 2ged_A          120 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL  181 (193)
T ss_dssp             EEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred             CEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence            9999999999 88999999888888765431   2579999999999998877766655443

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.91  E-value=5.5e-25  Score=162.39  Aligned_cols=121  Identities=18%  Similarity=0.333  Sum_probs=93.0

Q ss_pred             cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECC----------ChhhHHHHHHHHHHHhcccccCCCeEEEEEecC
Q 030289           58 KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSN----------DRERIGEAKDELHRMLSEDELREAVLLVFANKQ  127 (180)
Q Consensus        58 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~  127 (180)
                      +.+.+++|||+|++.++..|..++++++++++|||++          +..+++....|+..+.......++|+++|+||+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            4588999999999999999999999999999999998          788999999999999877656789999999999


Q ss_pred             CCCCCC----C-------------------HhHHHhHhCCC-----------ccCCcceEEEEeeccCCCChHHHHHHHH
Q 030289          128 DLPNAM----S-------------------VSEVTDKLGLH-----------SLRQRRWYIQAACATSGQGLYEGLDWLS  173 (180)
Q Consensus       128 D~~~~~----~-------------------~~~~~~~~~~~-----------~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  173 (180)
                      |+.++.    .                   .++........           ......+.+++|||+++.||+++|.++.
T Consensus       261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~  340 (354)
T 2xtz_A          261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD  340 (354)
T ss_dssp             HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence            974311    0                   11111110000           0012356789999999999999999999


Q ss_pred             HHhhh
Q 030289          174 SNVSA  178 (180)
Q Consensus       174 ~~~~~  178 (180)
                      +.+.+
T Consensus       341 ~~I~~  345 (354)
T 2xtz_A          341 ETLRR  345 (354)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88765

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.91  E-value=1.1e-23  Score=160.46  Aligned_cols=159  Identities=16%  Similarity=0.157  Sum_probs=108.2

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCCc--ccccc--ccceeEEEEEEcCeEEEEEEcCCCCCChh-----------h-HH
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNVSFTVWDVGGQDKIRP-----------L-WR   78 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----------~-~~   78 (180)
                      ..++|+++|++|||||||+|+|++...  ....+  |.+.....+..++..+.+|||||..+...           . ..
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~  258 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV  258 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence            458999999999999999999998763  33333  44455567777888999999999743221           1 23


Q ss_pred             hhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEE
Q 030289           79 HYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQA  156 (180)
Q Consensus        79 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  156 (180)
                      .+++.+|++++++|+++..+.+.  .++...+.   ..++|+++|+||+|+.+...  .+++...+..........++++
T Consensus       259 ~~i~~ad~vllv~d~~~~~~~~~--~~i~~~l~---~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (439)
T 1mky_A          259 DSIEKADVVVIVLDATQGITRQD--QRMAGLME---RRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIF  333 (439)
T ss_dssp             HHHHHCSEEEEEEETTTCCCHHH--HHHHHHHH---HTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEE
T ss_pred             HHHhhCCEEEEEEeCCCCCCHHH--HHHHHHHH---HcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEE
Confidence            56778999999999987554433  22333322   25789999999999876432  3333332222222223468999


Q ss_pred             eeccCCCChHHHHHHHHHHhhh
Q 030289          157 ACATSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       157 ~Sa~~~~~i~~~~~~l~~~~~~  178 (180)
                      +||++|.|++++|+.+.+.+.+
T Consensus       334 ~SA~~g~gv~~l~~~i~~~~~~  355 (439)
T 1mky_A          334 TSADKGWNIDRMIDAMNLAYAS  355 (439)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999887654

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.91  E-value=1.4e-23  Score=158.52  Aligned_cols=160  Identities=17%  Similarity=0.116  Sum_probs=103.1

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCC----cccccc--ccceeEEEEEEc-----------------------CeEEE
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGE----IVTTIP--TIGFNVETVEYK-----------------------NVSFT   63 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~----~~~~~~--t~~~~~~~~~~~-----------------------~~~~~   63 (180)
                      ....+||+++|+.++|||||+++|++..    ..+..+  |++..+......                       ...+.
T Consensus         5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   84 (408)
T 1s0u_A            5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS   84 (408)
T ss_dssp             CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred             cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence            3567999999999999999999998543    122223  666554433321                       26899


Q ss_pred             EEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC----HhHHH
Q 030289           64 VWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS----VSEVT  139 (180)
Q Consensus        64 i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~----~~~~~  139 (180)
                      +|||||++.|...+...+..+|++++|+|+++..........+..+. .  ....|+++++||+|+.+...    .+++.
T Consensus        85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~-~--l~~~~iivv~NK~Dl~~~~~~~~~~~~i~  161 (408)
T 1s0u_A           85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALE-I--LGIDKIIIVQNKIDLVDEKQAEENYEQIK  161 (408)
T ss_dssp             EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHH-H--TTCCCEEEEEECTTSSCTTTTTTHHHHHH
T ss_pred             EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHH-H--cCCCeEEEEEEccCCCCHHHHHHHHHHHH
Confidence            99999999888888888888999999999985421122222222221 1  12357999999999976432    23333


Q ss_pred             hHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHHhh
Q 030289          140 DKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVS  177 (180)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  177 (180)
                      +.+...  ...+++++++||++|.|+++++++|.+.+.
T Consensus       162 ~~l~~~--~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~  197 (408)
T 1s0u_A          162 EFVKGT--IAENAPIIPISAHHEANIDVLLKAIQDFIP  197 (408)
T ss_dssp             HHHTTS--TTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred             HHHhhc--CCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            332211  123568999999999999999999998664

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.90  E-value=2.9e-24  Score=164.92  Aligned_cols=161  Identities=15%  Similarity=0.120  Sum_probs=111.4

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhhcCC----c----cc--cccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhc
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLKLGE----I----VT--TIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYF   81 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~----~----~~--~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~   81 (180)
                      ..+++++|+++|+.++|||||+++|.+..    .    .+  ...|++..+..+...+..+.+|||||++.|...+..++
T Consensus        15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~   94 (482)
T 1wb1_A           15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAA   94 (482)
T ss_dssp             CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHT
T ss_pred             hcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHH
Confidence            34678999999999999999999998765    1    11  12466666677777889999999999999988888999


Q ss_pred             cccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCc--c-CCcceEEEEee
Q 030289           82 QNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHS--L-RQRRWYIQAAC  158 (180)
Q Consensus        82 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~S  158 (180)
                      ..+|++++|+|+++... .....++... ..   .++|.++++||+|+.++...++..+++....  . .-...+++++|
T Consensus        95 ~~aD~~ilVvda~~g~~-~qt~e~l~~~-~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vS  169 (482)
T 1wb1_A           95 DIIDLALIVVDAKEGPK-TQTGEHMLIL-DH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPIS  169 (482)
T ss_dssp             TSCCEEEEEEETTTCSC-HHHHHHHHHH-HH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECC
T ss_pred             hhCCEEEEEEecCCCcc-HHHHHHHHHH-HH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEE
Confidence            99999999999986321 1112222211 21   3678899999999986322222222111000  0 01156899999


Q ss_pred             ccCCCChHHHHHHHHHHhh
Q 030289          159 ATSGQGLYEGLDWLSSNVS  177 (180)
Q Consensus       159 a~~~~~i~~~~~~l~~~~~  177 (180)
                      |++|+|+++++++|.+.+.
T Consensus       170 A~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          170 AKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             TTTCTTHHHHHHHHHHHHH
T ss_pred             CcCCCCHHHHHHHHHHhhc
Confidence            9999999999999998764

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.90  E-value=9.8e-25  Score=168.30  Aligned_cols=158  Identities=16%  Similarity=0.100  Sum_probs=112.1

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCCcc-cccc--ccceeEEEEEE-cCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEY-KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV   90 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~--t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (180)
                      +.++|+++|++++|||||+++|.+.... ...+  |..+....+.. .+..+.+|||||++.|...+..+++.+|++++|
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILV   82 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILV   82 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEEE
Confidence            5789999999999999999999876522 2222  33333334433 456899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC--CHhHHHhHhCCCc-cCCcceEEEEeeccCCCChHH
Q 030289           91 VDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM--SVSEVTDKLGLHS-LRQRRWYIQAACATSGQGLYE  167 (180)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~~i~~  167 (180)
                      +|+++....+.... +....    ..++|+++++||+|+.+..  ...+......... ......+++++||++|.|+++
T Consensus        83 VDa~dg~~~qt~e~-l~~~~----~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e  157 (537)
T 3izy_P           83 VAADDGVMKQTVES-IQHAK----DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA  157 (537)
T ss_dssp             CBSSSCCCHHHHHH-HHHHH----TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred             EECCCCccHHHHHH-HHHHH----HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence            99987554333332 23222    2468999999999987532  1111122222111 112357899999999999999


Q ss_pred             HHHHHHHHhh
Q 030289          168 GLDWLSSNVS  177 (180)
Q Consensus       168 ~~~~l~~~~~  177 (180)
                      +++++...+.
T Consensus       158 Lle~I~~l~~  167 (537)
T 3izy_P          158 LAEATIALAE  167 (537)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHhhh
Confidence            9999988754

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.90  E-value=4.4e-23  Score=147.14  Aligned_cols=162  Identities=16%  Similarity=0.157  Sum_probs=106.2

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhhcCC-cc-ccc---cccceeEEEEEEcCeEEEEEEcCCCCCCh-----------h
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLKLGE-IV-TTI---PTIGFNVETVEYKNVSFTVWDVGGQDKIR-----------P   75 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~-~~~---~t~~~~~~~~~~~~~~~~i~D~~G~~~~~-----------~   75 (180)
                      ...+.++|+|+|++|||||||+|+|++.. .. ...   .|.......+...+..+.+|||||...+.           .
T Consensus        18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~   97 (260)
T 2xtp_A           18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQR   97 (260)
T ss_dssp             ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence            45678999999999999999999999876 32 222   34455666777788999999999965442           1


Q ss_pred             hHHhhccccCEEEEEEECCChhhH-HHHHHHHHHHhcccccCCCeEEEEEe-cCCCCCCCCHhH------------HHhH
Q 030289           76 LWRHYFQNTHGLIFVVDSNDRERI-GEAKDELHRMLSEDELREAVLLVFAN-KQDLPNAMSVSE------------VTDK  141 (180)
Q Consensus        76 ~~~~~~~~~~~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~iiiv~n-K~D~~~~~~~~~------------~~~~  141 (180)
                      ....+++.+|++++|+|+++.... .....++......  ....|.++++| |+|+... ....            +...
T Consensus        98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~--~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~  174 (260)
T 2xtp_A           98 CYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGE--DAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAA  174 (260)
T ss_dssp             HHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCG--GGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHH
T ss_pred             HHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCc--hhhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHH
Confidence            233467889999999999862222 2233444444322  11345566665 9999753 3333            2222


Q ss_pred             hCCCccCCcceEEEEeeccCCCChHHHHHHHHHHhhhc
Q 030289          142 LGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       142 ~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  179 (180)
                      .+....   .+..+++||+++.|++++|..+.+.+...
T Consensus       175 ~~~~~~---~~~~~~~SA~~~~gv~~l~~~i~~~~~~~  209 (260)
T 2xtp_A          175 CGGRIC---AFNNRAEGSNQDDQVKELMDCIEDLLMEK  209 (260)
T ss_dssp             TTTCEE---ECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hCCeEE---EecCcccccccHHHHHHHHHHHHHHHHhC
Confidence            221110   01118899999999999999999987653

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.90  E-value=2e-23  Score=155.33  Aligned_cols=146  Identities=6%  Similarity=0.033  Sum_probs=110.8

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChh
Q 030289           18 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRE   97 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~   97 (180)
                      +|+++|++++|||||+++|+     ....|++..+..+...+..+.+|||||+++|.......++.+|++++|+| + ..
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~-----~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~-~g   95 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG-----KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-P-QG   95 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS-----EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-T-TC
T ss_pred             EEEEECCCCCCHHHHHHHHH-----hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-C-CC
Confidence            99999999999999999998     45567787777787788899999999999998888888899999999999 4 33


Q ss_pred             hHHHHHHHHHHHhcccccCCCeE-EEEEe-cCCCCCCCCHh----HHHhHhCCCccCCcceEEEE--eeccC---CCChH
Q 030289           98 RIGEAKDELHRMLSEDELREAVL-LVFAN-KQDLPNAMSVS----EVTDKLGLHSLRQRRWYIQA--ACATS---GQGLY  166 (180)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~i-iiv~n-K~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~Sa~~---~~~i~  166 (180)
                      .......++.....    .++|. ++++| |+|+ ++...+    ++.+.+...  ....+++++  +||++   +.|++
T Consensus        96 ~~~qt~e~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~--~~~~~~ii~~~~SA~~~~~g~gi~  168 (370)
T 2elf_A           96 LDAHTGECIIALDL----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGT--VLQDWECISLNTNKSAKNPFEGVD  168 (370)
T ss_dssp             CCHHHHHHHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTS--TTTTCEEEECCCCTTSSSTTTTHH
T ss_pred             CcHHHHHHHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhc--CCCceEEEecccccccCcCCCCHH
Confidence            34445555444322    35666 88999 9999 532222    222222111  113468999  99999   99999


Q ss_pred             HHHHHHHHHhh
Q 030289          167 EGLDWLSSNVS  177 (180)
Q Consensus       167 ~~~~~l~~~~~  177 (180)
                      ++++.|.+.+.
T Consensus       169 ~L~~~l~~~~~  179 (370)
T 2elf_A          169 ELKARINEVAE  179 (370)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHhhcc
Confidence            99999988764

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.90  E-value=1.2e-23  Score=159.00  Aligned_cols=161  Identities=16%  Similarity=0.121  Sum_probs=110.7

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhhcCC----cccccc--ccceeEEEEEEc-----------------------CeEE
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLKLGE----IVTTIP--TIGFNVETVEYK-----------------------NVSF   62 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~----~~~~~~--t~~~~~~~~~~~-----------------------~~~~   62 (180)
                      .....++|+++|+.++|||||+++|++..    ..+..+  |++..+..+...                       ...+
T Consensus         6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i   85 (410)
T 1kk1_A            6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV   85 (410)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred             cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence            34667999999999999999999998543    222223  666555443331                       2689


Q ss_pred             EEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC----HhHH
Q 030289           63 TVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS----VSEV  138 (180)
Q Consensus        63 ~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~----~~~~  138 (180)
                      .+|||||++.|.......+..+|++++|+|+++..........+..+..   ....|+++++||+|+.+...    .+++
T Consensus        86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~---~~~~~iivviNK~Dl~~~~~~~~~~~~i  162 (410)
T 1kk1_A           86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQI---IGQKNIIIAQNKIELVDKEKALENYRQI  162 (410)
T ss_dssp             EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHH---HTCCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred             EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHH---cCCCcEEEEEECccCCCHHHHHHHHHHH
Confidence            9999999998888888888899999999999854211222222222211   12357999999999986432    2223


Q ss_pred             HhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHHhh
Q 030289          139 TDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVS  177 (180)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  177 (180)
                      .+.+...  ...+++++++||++|.|+++++++|.+.+.
T Consensus       163 ~~~l~~~--~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~  199 (410)
T 1kk1_A          163 KEFIEGT--VAENAPIIPISALHGANIDVLVKAIEDFIP  199 (410)
T ss_dssp             HHHHTTS--TTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHhc--CcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            3222211  123568999999999999999999988664

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.90  E-value=6.3e-23  Score=158.68  Aligned_cols=114  Identities=18%  Similarity=0.154  Sum_probs=89.2

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcC------------------Cccc-------cccccceeEEEEEEcCeEEEEEEcC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLG------------------EIVT-------TIPTIGFNVETVEYKNVSFTVWDVG   68 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~------------------~~~~-------~~~t~~~~~~~~~~~~~~~~i~D~~   68 (180)
                      .+..+|+|+|++|+|||||+|+|+..                  ....       ...|+......+...+..+.+||||
T Consensus        11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP   90 (528)
T 3tr5_A           11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP   90 (528)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence            45789999999999999999999621                  1111       2235566677788899999999999


Q ss_pred             CCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC
Q 030289           69 GQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA  132 (180)
Q Consensus        69 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~  132 (180)
                      |+..+...+..+++.+|++++|+|+++....+....| .....    .++|+++|+||+|+...
T Consensus        91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~----~~iPiivviNK~Dl~~~  149 (528)
T 3tr5_A           91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL----RHTPIMTFINKMDRDTR  149 (528)
T ss_dssp             CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT----TTCCEEEEEECTTSCCS
T ss_pred             CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH----cCCCEEEEEeCCCCccc
Confidence            9999999999999999999999999876555544433 33322    46899999999999754

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.90  E-value=2.8e-23  Score=157.90  Aligned_cols=155  Identities=18%  Similarity=0.208  Sum_probs=106.5

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhhcCC--cc--------------------------------ccccccceeEEEEEE
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLKLGE--IV--------------------------------TTIPTIGFNVETVEY   57 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~--~~--------------------------------~~~~t~~~~~~~~~~   57 (180)
                      ....++||+++|++++|||||+++|+...  ..                                +...|++..+..+..
T Consensus        13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~   92 (439)
T 3j2k_7           13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET   92 (439)
T ss_pred             CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence            34678999999999999999999995432  10                                112355666667777


Q ss_pred             cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhh---HH---HHHHHHHHHhcccccCCCe-EEEEEecCCCC
Q 030289           58 KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRER---IG---EAKDELHRMLSEDELREAV-LLVFANKQDLP  130 (180)
Q Consensus        58 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~~~-iiiv~nK~D~~  130 (180)
                      .+..+.+|||||+++|...+..++..+|++++|+|+++...   ++   .....+... .   ..++| +++++||+|+.
T Consensus        93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~-~---~~~v~~iIvviNK~Dl~  168 (439)
T 3j2k_7           93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLA-K---TAGVKHLIVLINKMDDP  168 (439)
T ss_pred             CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHH-H---HcCCCeEEEEeecCCCc
Confidence            88999999999999999999999999999999999986431   11   222222222 1   13455 99999999986


Q ss_pred             CCC----CHhHHHhHh----CCCccC-CcceEEEEeeccCCCChHHHHH
Q 030289          131 NAM----SVSEVTDKL----GLHSLR-QRRWYIQAACATSGQGLYEGLD  170 (180)
Q Consensus       131 ~~~----~~~~~~~~~----~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~  170 (180)
                      ...    ..+++.+++    ....+. ...++++++||++|.|++++.+
T Consensus       169 ~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          169 TVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            421    112222111    111111 1256899999999999999654

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.90  E-value=4.8e-23  Score=149.68  Aligned_cols=154  Identities=19%  Similarity=0.099  Sum_probs=107.0

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCCcc--cccc--ccceeEEEEEEcCeEEEEEEcCCCC-CC--------hhhHHhhc
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNVSFTVWDVGGQD-KI--------RPLWRHYF   81 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~-~~--------~~~~~~~~   81 (180)
                      +..+|+++|++|||||||+|+|++....  +..+  |.......+...+.++.+|||||.. ..        ......++
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l   86 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSI   86 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHH
Confidence            4558999999999999999999988732  2222  3333344556678899999999987 22        22235567


Q ss_pred             cccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC-CCHhHHHhHhCCCccCCcce-EEEEeec
Q 030289           82 QNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA-MSVSEVTDKLGLHSLRQRRW-YIQAACA  159 (180)
Q Consensus        82 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~Sa  159 (180)
                      +.+|++++|+|+++   +.....++...+..   .+.|+++++||+|+... ....+....+..    ..+. .++++||
T Consensus        87 ~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~----~~~~~~~i~iSA  156 (301)
T 1ega_A           87 GDVELVIFVVEGTR---WTPDDEMVLNKLRE---GKAPVILAVNKVDNVQEKADLLPHLQFLAS----QMNFLDIVPISA  156 (301)
T ss_dssp             CCEEEEEEEEETTC---CCHHHHHHHHHHHS---SSSCEEEEEESTTTCCCHHHHHHHHHHHHT----TSCCSEEEECCT
T ss_pred             hcCCEEEEEEeCCC---CCHHHHHHHHHHHh---cCCCEEEEEECcccCccHHHHHHHHHHHHH----hcCcCceEEEEC
Confidence            78999999999976   33344455444332   47899999999999762 222222222211    1222 6899999


Q ss_pred             cCCCChHHHHHHHHHHhhh
Q 030289          160 TSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       160 ~~~~~i~~~~~~l~~~~~~  178 (180)
                      +++.|++++++.+.+.+.+
T Consensus       157 ~~g~~v~~l~~~i~~~l~~  175 (301)
T 1ega_A          157 ETGLNVDTIAAIVRKHLPE  175 (301)
T ss_dssp             TTTTTHHHHHHHHHTTCCB
T ss_pred             CCCCCHHHHHHHHHHhCCc
Confidence            9999999999999876543

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.90  E-value=6.6e-24  Score=162.32  Aligned_cols=157  Identities=20%  Similarity=0.211  Sum_probs=102.6

Q ss_pred             hhhcccCccEEEEEcCCCCChHHHHHHhhcCCcccccc----ccceeEEEEEEcCeEEEEEEcCC--------CCCChhh
Q 030289            9 KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP----TIGFNVETVEYKNVSFTVWDVGG--------QDKIRPL   76 (180)
Q Consensus         9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~i~D~~G--------~~~~~~~   76 (180)
                      ..+..+...+|+++|.+|||||||+|+|++.+.....+    |.+..+..+...+..+.+|||||        ++.+...
T Consensus        16 ~~~~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~   95 (456)
T 4dcu_A           16 PRGSHMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQ   95 (456)
T ss_dssp             -------CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHH
T ss_pred             CChhhcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHH
Confidence            34556778899999999999999999999876332222    33333444444678999999999        5556667


Q ss_pred             HHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEE
Q 030289           77 WRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQA  156 (180)
Q Consensus        77 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (180)
                      ...+++++|++++|+|..+.  +.....++..++..   .+.|+++|+||+|+.....  ...     .........+++
T Consensus        96 ~~~~~~~ad~il~VvD~~~~--~~~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~~--~~~-----e~~~lg~~~~~~  163 (456)
T 4dcu_A           96 AEIAMDEADVIIFMVNGREG--VTAADEEVAKILYR---TKKPVVLAVNKLDNTEMRA--NIY-----DFYSLGFGEPYP  163 (456)
T ss_dssp             HHHHHHHCSEEEEEEESSSC--SCHHHHHHHHHHTT---CCSCEEEEEECC-----------C-----CSGGGSSSSEEE
T ss_pred             HHhhHhhCCEEEEEEeCCCC--CChHHHHHHHHHHH---cCCCEEEEEECccchhhhh--hHH-----HHHHcCCCceEE
Confidence            88889999999999998753  33445566666544   5789999999999865321  111     111111113579


Q ss_pred             eeccCCCChHHHHHHHHHHhh
Q 030289          157 ACATSGQGLYEGLDWLSSNVS  177 (180)
Q Consensus       157 ~Sa~~~~~i~~~~~~l~~~~~  177 (180)
                      +||.+|.|++++++.+.+.+.
T Consensus       164 iSA~~g~gv~~L~~~i~~~l~  184 (456)
T 4dcu_A          164 ISGTHGLGLGDLLDAVAEHFK  184 (456)
T ss_dssp             CCTTTCTTHHHHHHHHHTTGG
T ss_pred             eecccccchHHHHHHHHhhcc
Confidence            999999999999999988765

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.89  E-value=7.8e-24  Score=160.95  Aligned_cols=155  Identities=17%  Similarity=0.181  Sum_probs=101.9

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcC--Ccc--------------------------------ccccccceeEEEEEEcC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLG--EIV--------------------------------TTIPTIGFNVETVEYKN   59 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~--~~~--------------------------------~~~~t~~~~~~~~~~~~   59 (180)
                      +..+||+++|+.++|||||+++|+..  .+.                                ....|++.....+...+
T Consensus         4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~   83 (435)
T 1jny_A            4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK   83 (435)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence            46789999999999999999999864  111                                12245666666677788


Q ss_pred             eEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcc---cccCC-CeEEEEEecCCCCCCC-C
Q 030289           60 VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSE---DELRE-AVLLVFANKQDLPNAM-S  134 (180)
Q Consensus        60 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~---~~~~~-~~iiiv~nK~D~~~~~-~  134 (180)
                      ..+.+|||||+.+|...+..++..+|++++|+|+++ .+++....|..+...+   ....+ .++++++||+|+.+.. +
T Consensus        84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~  162 (435)
T 1jny_A           84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYD  162 (435)
T ss_dssp             CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTC
T ss_pred             eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcccc
Confidence            999999999999999999999999999999999987 5565433221111110   01123 4689999999997631 1


Q ss_pred             ---Hh----HHHhHhCCCccCCcceEEEEeeccCCCChHHHH
Q 030289          135 ---VS----EVTDKLGLHSLRQRRWYIQAACATSGQGLYEGL  169 (180)
Q Consensus       135 ---~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  169 (180)
                         .+    ++...+....+....++++++||++|.|+.+++
T Consensus       163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~  204 (435)
T 1jny_A          163 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS  204 (435)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence               11    122221111111224789999999999998554

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.89  E-value=1.2e-22  Score=150.83  Aligned_cols=156  Identities=20%  Similarity=0.146  Sum_probs=106.4

Q ss_pred             CccE-EEEEcCCCCChHHHHHHhhcCCc-c--ccccccceeEEEEEEcCeEEEEEEcCCCCC---------ChhhHHhhc
Q 030289           15 KEMR-ILMVGLDAAGKTTILYKLKLGEI-V--TTIPTIGFNVETVEYKNVSFTVWDVGGQDK---------IRPLWRHYF   81 (180)
Q Consensus        15 ~~~~-i~i~G~~~~GKStli~~l~~~~~-~--~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~   81 (180)
                      ..++ |+++|++|||||||+|+|++... .  ...+|.++....+.+.+..+.+|||+|...         +... ...+
T Consensus       177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~t-l~~~  255 (364)
T 2qtf_A          177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVT-LSEA  255 (364)
T ss_dssp             --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHH-HHGG
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHH-HHHH
Confidence            3466 99999999999999999998763 1  234577777788888889999999999622         2222 3357


Q ss_pred             cccCEEEEEEECCChh--hHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhH---HH----hHhCCCccCCcce
Q 030289           82 QNTHGLIFVVDSNDRE--RIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSE---VT----DKLGLHSLRQRRW  152 (180)
Q Consensus        82 ~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~---~~----~~~~~~~~~~~~~  152 (180)
                      ..+|++++|+|++++.  ..+....|.. ++......+.|+++|+||+|+.+.. ..+   ..    ..+.     ....
T Consensus       256 ~~aD~il~VvD~s~~~~~~~~~~~~~~~-~L~~l~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~l~-----~~~~  328 (364)
T 2qtf_A          256 KYSDALILVIDSTFSENLLIETLQSSFE-ILREIGVSGKPILVTLNKIDKINGD-LYKKLDLVEKLSKELY-----SPIF  328 (364)
T ss_dssp             GGSSEEEEEEETTSCHHHHHHHHHHHHH-HHHHHTCCSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHHHC-----SCEE
T ss_pred             HhCCEEEEEEECCCCcchHHHHHHHHHH-HHHHhCcCCCCEEEEEECCCCCCch-HHHHHHHHHHHHHHhc-----CCCC
Confidence            8899999999998765  3344333332 2222223578999999999987643 221   11    1210     1234


Q ss_pred             EEEEeeccCCCChHHHHHHHHHHhhh
Q 030289          153 YIQAACATSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       153 ~~~~~Sa~~~~~i~~~~~~l~~~~~~  178 (180)
                      +++++||+++.|++++++.+.+.+..
T Consensus       329 ~~~~~SA~~g~gi~~L~~~I~~~l~~  354 (364)
T 2qtf_A          329 DVIPISALKRTNLELLRDKIYQLATQ  354 (364)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCcCHHHHHHHHHHHhcc
Confidence            68999999999999999999987754

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.89  E-value=1.3e-23  Score=161.56  Aligned_cols=153  Identities=20%  Similarity=0.186  Sum_probs=105.1

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCC--cc--------------------------------ccccccceeEEEEEEc
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGE--IV--------------------------------TTIPTIGFNVETVEYK   58 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~--~~--------------------------------~~~~t~~~~~~~~~~~   58 (180)
                      ....+||+++|++++|||||+++|++..  +.                                ....|++.....+...
T Consensus        30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~  109 (483)
T 3p26_A           30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH  109 (483)
T ss_dssp             SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence            4568999999999999999999997541  00                                0123566666777778


Q ss_pred             CeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHH-----HHHHHHHHHhcccccCCCeEEEEEecCCCCCCC
Q 030289           59 NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIG-----EAKDELHRMLSEDELREAVLLVFANKQDLPNAM  133 (180)
Q Consensus        59 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~  133 (180)
                      +..+.+|||||+++|...+..++.++|++++|+|+++.....     ....++..+...  ....|+++|+||+|+.+..
T Consensus       110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~--~~~~~iIvviNK~Dl~~~~  187 (483)
T 3p26_A          110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS--LGIHNLIIAMNKMDNVDWS  187 (483)
T ss_dssp             SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH--TTCCCEEEEEECGGGGTTC
T ss_pred             CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH--cCCCcEEEEEECcCcccch
Confidence            899999999999999999999999999999999998764322     122222222222  1235699999999997632


Q ss_pred             --CHhHHHhHhC----CCccCCcceEEEEeeccCCCChHH
Q 030289          134 --SVSEVTDKLG----LHSLRQRRWYIQAACATSGQGLYE  167 (180)
Q Consensus       134 --~~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~i~~  167 (180)
                        ..+++.+.+.    ........++++++||++|.|+++
T Consensus       188 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          188 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence              1222222111    111122367999999999999985

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.89  E-value=7e-23  Score=160.16  Aligned_cols=156  Identities=21%  Similarity=0.204  Sum_probs=107.7

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCccccc-----cccceeEEEEE----------------EcCeEEEEEEcCCCCC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-----PTIGFNVETVE----------------YKNVSFTVWDVGGQDK   72 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~-----~t~~~~~~~~~----------------~~~~~~~i~D~~G~~~   72 (180)
                      .+.++|+++|++++|||||+++|.+.....+.     ++++..+....                .....+.+|||||++.
T Consensus         3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~   82 (594)
T 1g7s_A            3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA   82 (594)
T ss_dssp             ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence            56789999999999999999999865533222     23443333221                1123699999999999


Q ss_pred             ChhhHHhhccccCEEEEEEECCC---hhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--------------H
Q 030289           73 IRPLWRHYFQNTHGLIFVVDSND---RERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--------------V  135 (180)
Q Consensus        73 ~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--------------~  135 (180)
                      |...+..+++.+|++++|+|+++   +.+++.+.    .+ .   ..++|+++++||+|+.....              .
T Consensus        83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l-~---~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~  154 (594)
T 1g7s_A           83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALN----IL-R---MYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQD  154 (594)
T ss_dssp             CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HH-H---HTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSC
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HH-H---HcCCeEEEEecccccccccccccCCchHHHHHHhH
Confidence            99888888999999999999998   44443332    12 1   24789999999999864211              0


Q ss_pred             h-----------HHHhHh---CCCc-----c--CCcceEEEEeeccCCCChHHHHHHHHHHhh
Q 030289          136 S-----------EVTDKL---GLHS-----L--RQRRWYIQAACATSGQGLYEGLDWLSSNVS  177 (180)
Q Consensus       136 ~-----------~~~~~~---~~~~-----~--~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  177 (180)
                      +           ++...+   +...     .  .....+++++||++|.|++++++++...+.
T Consensus       155 ~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~  217 (594)
T 1g7s_A          155 IQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence            0           111111   1100     0  123569999999999999999999987654

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.89  E-value=1.4e-22  Score=158.37  Aligned_cols=154  Identities=19%  Similarity=0.209  Sum_probs=107.5

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCC--ccc----------------cccccceeEEEEEEc-----CeEEEEEEcCCCC
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGE--IVT----------------TIPTIGFNVETVEYK-----NVSFTVWDVGGQD   71 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~--~~~----------------~~~t~~~~~~~~~~~-----~~~~~i~D~~G~~   71 (180)
                      +..||+|+|+.++|||||+++|+...  ...                ...|+......+.+.     ++.+.+|||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            46799999999999999999998632  110                011333233344333     4789999999999


Q ss_pred             CChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC---HhHHHhHhCCCccC
Q 030289           72 KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS---VSEVTDKLGLHSLR  148 (180)
Q Consensus        72 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~---~~~~~~~~~~~~~~  148 (180)
                      .|...+..+++.+|++++|+|+++....+....|....     ..++|+++|+||+|+.....   .+++.+.++...  
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~-----~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~--  155 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM-----EMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDA--  155 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHH-----HTTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCC--
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-----HCCCCEEEeeeccCcccccHHHHHHHHHHHhCCCc--
Confidence            99999999999999999999999876666666665544     24689999999999986431   123333333221  


Q ss_pred             CcceEEEEeeccCCCChHHHHHHHHHHhhh
Q 030289          149 QRRWYIQAACATSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       149 ~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  178 (180)
                         ..++++||++|.|++++++++.+.+..
T Consensus       156 ---~~vi~vSAktg~GI~~Ll~~I~~~lp~  182 (599)
T 3cb4_D          156 ---TDAVRCSAKTGVGVQDVLERLVRDIPP  182 (599)
T ss_dssp             ---TTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred             ---ceEEEeecccCCCchhHHHHHhhcCCC
Confidence               148999999999999999999988754

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.89  E-value=2.2e-23  Score=149.76  Aligned_cols=157  Identities=13%  Similarity=0.190  Sum_probs=90.7

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC-c-ccc-------ccccceeEEEEEE----cCeEEEEEEcCCCC-------CC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE-I-VTT-------IPTIGFNVETVEY----KNVSFTVWDVGGQD-------KI   73 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~-~~~-------~~t~~~~~~~~~~----~~~~~~i~D~~G~~-------~~   73 (180)
                      ...++|+++|.+|+|||||+|+|++.. . ..+       .+|++........    ..+.+.+|||||..       .+
T Consensus         6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~   85 (274)
T 3t5d_A            6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW   85 (274)
T ss_dssp             -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred             ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence            347899999999999999999988766 2 222       5677766665554    23589999999963       23


Q ss_pred             hhhH-------Hhhccc-------------cCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC
Q 030289           74 RPLW-------RHYFQN-------------THGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM  133 (180)
Q Consensus        74 ~~~~-------~~~~~~-------------~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~  133 (180)
                      ....       ..++..             +|+++++++..+.........++..+ ..    ++|+++|+||+|+.+..
T Consensus        86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l-~~----~~pvi~V~nK~D~~~~~  160 (274)
T 3t5d_A           86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL-HE----KVNIIPLIAKADTLTPE  160 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHH-TT----TSCEEEEESSGGGSCHH
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHH-hc----cCCEEEEEeccCCCCHH
Confidence            3333       444443             78999999766422112223334433 22    68999999999987643


Q ss_pred             CHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHHh
Q 030289          134 SVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV  176 (180)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  176 (180)
                      ........+. ..+...+++++.+|+.+++|++++++++.+.+
T Consensus       161 e~~~~~~~i~-~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~  202 (274)
T 3t5d_A          161 ECQQFKKQIM-KEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  202 (274)
T ss_dssp             HHHHHHHHHH-HHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred             HHHHHHHHHH-HHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence            3333222111 11223456789999999999999999998764

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.89  E-value=2.6e-22  Score=156.68  Aligned_cols=154  Identities=19%  Similarity=0.224  Sum_probs=110.2

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC--ccc----------------cccccceeEEEEEEc-----CeEEEEEEcCCC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE--IVT----------------TIPTIGFNVETVEYK-----NVSFTVWDVGGQ   70 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~--~~~----------------~~~t~~~~~~~~~~~-----~~~~~i~D~~G~   70 (180)
                      .+..||+++|+.++|||||+++|+...  ...                ...|+......+.+.     .+.+.+|||||+
T Consensus         4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh   83 (600)
T 2ywe_A            4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH   83 (600)
T ss_dssp             GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence            456799999999999999999997521  110                111333223334332     378999999999


Q ss_pred             CCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhH----HHhHhCCCc
Q 030289           71 DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSE----VTDKLGLHS  146 (180)
Q Consensus        71 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~----~~~~~~~~~  146 (180)
                      ..|...+..++..+|++++|+|+++....+....|....     ..++|+++|+||+|+.... .++    +.+.++.. 
T Consensus        84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~-----~~~ipiIvviNKiDl~~a~-~~~v~~el~~~lg~~-  156 (600)
T 2ywe_A           84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAV-----EQDLVIIPVINKIDLPSAD-VDRVKKQIEEVLGLD-  156 (600)
T ss_dssp             GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHH-----HTTCEEEEEEECTTSTTCC-HHHHHHHHHHTSCCC-
T ss_pred             HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHH-----HCCCCEEEEEeccCccccC-HHHHHHHHHHhhCCC-
Confidence            999988999999999999999999887777766665543     2478999999999997643 333    22222221 


Q ss_pred             cCCcceEEEEeeccCCCChHHHHHHHHHHhhh
Q 030289          147 LRQRRWYIQAACATSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       147 ~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  178 (180)
                          ...++++||++|.|++++++++.+.+..
T Consensus       157 ----~~~vi~vSAktg~GI~~Lle~I~~~lp~  184 (600)
T 2ywe_A          157 ----PEEAILASAKEGIGIEEILEAIVNRIPP  184 (600)
T ss_dssp             ----GGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             ----cccEEEEEeecCCCchHHHHHHHHhccc
Confidence                1248999999999999999999987753

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.89  E-value=3.6e-23  Score=162.60  Aligned_cols=153  Identities=19%  Similarity=0.187  Sum_probs=105.8

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC--ccc--------------------------------cccccceeEEEEEEcC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE--IVT--------------------------------TIPTIGFNVETVEYKN   59 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~--~~~--------------------------------~~~t~~~~~~~~~~~~   59 (180)
                      ...+||+++|++++|||||+++|++..  ...                                ...|++.....+...+
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~  244 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  244 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence            568999999999999999999998653  111                                1236666677788889


Q ss_pred             eEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChh---hH--HHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC
Q 030289           60 VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRE---RI--GEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS  134 (180)
Q Consensus        60 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~--~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~  134 (180)
                      ..+.+|||||++.|...+..++..+|++++|+|+++..   ++  .....++..+...  ....|+++|+||+|+.+...
T Consensus       245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~--lgi~~iIVVvNKiDl~~~~~  322 (611)
T 3izq_1          245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS--LGIHNLIIAMNKMDNVDWSQ  322 (611)
T ss_dssp             CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT--TTCCEEEEEEECTTTTTTCH
T ss_pred             ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH--cCCCeEEEEEecccccchhH
Confidence            99999999999999999999999999999999998632   11  0111122222222  12346999999999976221


Q ss_pred             --HhHHHhHh----CCCccCCcceEEEEeeccCCCChHHH
Q 030289          135 --VSEVTDKL----GLHSLRQRRWYIQAACATSGQGLYEG  168 (180)
Q Consensus       135 --~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (180)
                        .+++...+    ....+....++++++||++|.|++++
T Consensus       323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence              12222111    11111223568999999999999865

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.89  E-value=3.7e-23  Score=157.22  Aligned_cols=151  Identities=17%  Similarity=0.131  Sum_probs=102.7

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC--c-cc---------------------------------cccccceeEEEEEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE--I-VT---------------------------------TIPTIGFNVETVEY   57 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~--~-~~---------------------------------~~~t~~~~~~~~~~   57 (180)
                      +..+||+++|++++|||||+++|++..  . ..                                 ...|++..+..+..
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~  101 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST  101 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence            456899999999999999999997543  0 00                                 11244445556666


Q ss_pred             cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--H
Q 030289           58 KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--V  135 (180)
Q Consensus        58 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~  135 (180)
                      .+..+.+|||||++.|...+..++..+|++++|+|+++... .....++... ..  ....|+++|+||+|+.+...  .
T Consensus       102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~-~~--~~~~~iIvviNK~Dl~~~~~~~~  177 (434)
T 1zun_B          102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIA-SL--LGIKHIVVAINKMDLNGFDERVF  177 (434)
T ss_dssp             SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHH-HH--TTCCEEEEEEECTTTTTSCHHHH
T ss_pred             CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHH-HH--cCCCeEEEEEEcCcCCcccHHHH
Confidence            88899999999999998888889999999999999987542 2233333322 21  12246999999999976321  1


Q ss_pred             hHHHhHh----CCCccCCcceEEEEeeccCCCChHHH
Q 030289          136 SEVTDKL----GLHSLRQRRWYIQAACATSGQGLYEG  168 (180)
Q Consensus       136 ~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (180)
                      +++....    .........++++++||++|.|++++
T Consensus       178 ~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~  214 (434)
T 1zun_B          178 ESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK  214 (434)
T ss_dssp             HHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence            1121111    11110123478999999999999974

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.88  E-value=3.2e-23  Score=155.92  Aligned_cols=158  Identities=17%  Similarity=0.107  Sum_probs=109.0

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCC-------cc------------ccccccceeEEEEEEcCeEEEEEEcCCCCCChh
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGE-------IV------------TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRP   75 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~-------~~------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~   75 (180)
                      .++||+++|++++|||||+++|++..       +.            ....|++..+..+...+..+.+|||||++.|..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            46899999999999999999998631       10            112355555555666778999999999999888


Q ss_pred             hHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCe-EEEEEecCCCCCCCC-Hh----HHHhHhCCCccCC
Q 030289           76 LWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV-LLVFANKQDLPNAMS-VS----EVTDKLGLHSLRQ  149 (180)
Q Consensus        76 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iiiv~nK~D~~~~~~-~~----~~~~~~~~~~~~~  149 (180)
                      .+..++..+|++++|+|+++....+. ..++... ..   .++| +++++||+|+.+... .+    ++.+.+....+..
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~qt-~e~l~~~-~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~  156 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMPQT-REHLLLA-RQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG  156 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHH-HH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCHHH-HHHHHHH-HH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence            88899999999999999987543222 2333222 21   3677 789999999975221 11    1211111111112


Q ss_pred             cceEEEEeeccCCCC----------hHHHHHHHHHHhh
Q 030289          150 RRWYIQAACATSGQG----------LYEGLDWLSSNVS  177 (180)
Q Consensus       150 ~~~~~~~~Sa~~~~~----------i~~~~~~l~~~~~  177 (180)
                      ..++++++||++|.|          ++++++.+.+.+.
T Consensus       157 ~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p  194 (397)
T 1d2e_A          157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (397)
T ss_dssp             TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence            246899999999765          8899999887654

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.88  E-value=3.1e-23  Score=156.44  Aligned_cols=160  Identities=19%  Similarity=0.173  Sum_probs=111.3

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcC--------Ccc------------ccccccceeEEEEEEcCeEEEEEEcCCCCC
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLG--------EIV------------TTIPTIGFNVETVEYKNVSFTVWDVGGQDK   72 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~--------~~~------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~   72 (180)
                      .+..+||+++|++++|||||+++|++.        .+.            ....|+......+...+..+.+|||||++.
T Consensus         8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~   87 (405)
T 2c78_A            8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD   87 (405)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred             CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence            456799999999999999999999863        111            112255555556666788999999999999


Q ss_pred             ChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCe-EEEEEecCCCCCCCC-Hh----HHHhHhCCCc
Q 030289           73 IRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV-LLVFANKQDLPNAMS-VS----EVTDKLGLHS  146 (180)
Q Consensus        73 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iiiv~nK~D~~~~~~-~~----~~~~~~~~~~  146 (180)
                      |...+..++..+|++++|+|+++... .....++.....    .++| +++++||+|+.+... .+    ++.+.+....
T Consensus        88 f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~  162 (405)
T 2c78_A           88 YIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE  162 (405)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence            98888999999999999999987543 333444443322    3677 899999999975221 11    1111111111


Q ss_pred             cCCcceEEEEeeccCCCC------------------hHHHHHHHHHHhh
Q 030289          147 LRQRRWYIQAACATSGQG------------------LYEGLDWLSSNVS  177 (180)
Q Consensus       147 ~~~~~~~~~~~Sa~~~~~------------------i~~~~~~l~~~~~  177 (180)
                      +....++++++||++|.|                  ++++++.+.+.+.
T Consensus       163 ~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp  211 (405)
T 2c78_A          163 FPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP  211 (405)
T ss_dssp             SCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred             ccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence            112246899999999987                  7788887776553

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.88  E-value=4.4e-23  Score=145.44  Aligned_cols=167  Identities=14%  Similarity=0.086  Sum_probs=98.8

Q ss_pred             hhcccCccEEEEEcCCCCChHHHHHHhhcCCc-cccc----cccceeEEEEEEcCeEEEEEEcCCCCC-----------C
Q 030289           10 MLFARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTI----PTIGFNVETVEYKNVSFTVWDVGGQDK-----------I   73 (180)
Q Consensus        10 ~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~----~t~~~~~~~~~~~~~~~~i~D~~G~~~-----------~   73 (180)
                      +......+||+++|++|||||||+|+|++... ....    .|..+....+...+..+.+|||||...           +
T Consensus        23 ~~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~  102 (239)
T 3lxx_A           23 QEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEI  102 (239)
T ss_dssp             -----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHH
T ss_pred             CCCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHH
Confidence            44456789999999999999999999998773 3222    345566667777889999999999442           3


Q ss_pred             hhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhccc-ccCCCeEEEEEecCCCCCCCCHhHHHhHhC---CCccCC
Q 030289           74 RPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSED-ELREAVLLVFANKQDLPNAMSVSEVTDKLG---LHSLRQ  149 (180)
Q Consensus        74 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~---~~~~~~  149 (180)
                      ......+++++|++++|+|+++...  ....++..+.... .....|+++|+||+|+......++......   ......
T Consensus       103 ~~~~~~~~~~~~~~l~v~d~~~~~~--~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~  180 (239)
T 3lxx_A          103 IRCILLTSPGPHALLLVVPLGRYTE--EEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDI  180 (239)
T ss_dssp             HHHHHHTTTCCSEEEEEEETTCCSS--HHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHH
T ss_pred             HHHHHhcCCCCcEEEEEeeCCCCCH--HHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHH
Confidence            3445556677899999999875433  1122222222111 112458999999999876544332211100   001112


Q ss_pred             cceEEEEeeccC-----CCChHHHHHHHHHHhhh
Q 030289          150 RRWYIQAACATS-----GQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       150 ~~~~~~~~Sa~~-----~~~i~~~~~~l~~~~~~  178 (180)
                      .+..++.++...     ..++.+++..+.+.+.+
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          181 FGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             HSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence            233355555443     36899999998887755

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.88  E-value=1.1e-23  Score=161.27  Aligned_cols=156  Identities=20%  Similarity=0.188  Sum_probs=107.5

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCccc-c--ccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEIVT-T--IPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV   90 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~-~--~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (180)
                      .+..+|+++|++++|||||+++|....... .  ..|.......+...+..+.+|||||++.|...+...+..+|++++|
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV   81 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLV   81 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence            467899999999999999999998654221 1  1233333334445677899999999999998888899999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCC--ccCC--cceEEEEeeccCCCChH
Q 030289           91 VDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLH--SLRQ--RRWYIQAACATSGQGLY  166 (180)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~Sa~~~~~i~  166 (180)
                      +|+++....+.. ..+....    ..++|+++++||+|+.+.. .+++...+...  ....  ..++++++||++|.|++
T Consensus        82 Vda~~g~~~qT~-e~l~~~~----~~~vPiIVviNKiDl~~~~-~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~  155 (501)
T 1zo1_I           82 VAADDGVMPQTI-EAIQHAK----AAQVPVVVAVNKIDKPEAD-PDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGID  155 (501)
T ss_dssp             EETTTBSCTTTH-HHHHHHH----HTTCCEEEEEECSSSSTTC-CCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCT
T ss_pred             eecccCccHHHH-HHHHHHH----hcCceEEEEEEeccccccC-HHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcc
Confidence            999873211111 1222221    2478999999999997521 11122121111  1111  23689999999999999


Q ss_pred             HHHHHHHHH
Q 030289          167 EGLDWLSSN  175 (180)
Q Consensus       167 ~~~~~l~~~  175 (180)
                      ++++++...
T Consensus       156 eLle~I~~~  164 (501)
T 1zo1_I          156 ELLDAILLQ  164 (501)
T ss_dssp             THHHHTTTT
T ss_pred             hhhhhhhhh
Confidence            999998754

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.88  E-value=8.6e-22  Score=143.02  Aligned_cols=157  Identities=19%  Similarity=0.191  Sum_probs=101.0

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCcc-------ccccc----------------------cce--------------
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEIV-------TTIPT----------------------IGF--------------   50 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~-------~~~~t----------------------~~~--------------   50 (180)
                      ...++|+|+|.+|||||||+|+|++..+.       +..|+                      ...              
T Consensus        24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i  103 (299)
T 2aka_B           24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  103 (299)
T ss_dssp             CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence            45679999999999999999999987632       11222                      000              


Q ss_pred             -------e----EEEEEE-cCeEEEEEEcCCCC-------------CChhhHHhhccccCEEE-EEEECCChhhHHHHHH
Q 030289           51 -------N----VETVEY-KNVSFTVWDVGGQD-------------KIRPLWRHYFQNTHGLI-FVVDSNDRERIGEAKD  104 (180)
Q Consensus        51 -------~----~~~~~~-~~~~~~i~D~~G~~-------------~~~~~~~~~~~~~~~~i-~v~d~~~~~~~~~~~~  104 (180)
                             .    ...+.. ....+.+|||||..             .+......+++.++.++ +|+|+++.........
T Consensus       104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~  183 (299)
T 2aka_B          104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  183 (299)
T ss_dssp             CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred             cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence                   0    001111 24689999999953             23456777888888776 7899976433333333


Q ss_pred             HHHHHhcccccCCCeEEEEEecCCCCCCCC-HhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHH
Q 030289          105 ELHRMLSEDELREAVLLVFANKQDLPNAMS-VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSN  175 (180)
Q Consensus       105 ~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  175 (180)
                      ++..+ .   ..+.|+++|+||+|+.+... ..+.... ..........+++++||++|.|++++++++.+.
T Consensus       184 ~~~~~-~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~  250 (299)
T 2aka_B          184 IAKEV-D---PQGQRTIGVITKLDLMDEGTDARDVLEN-KLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  250 (299)
T ss_dssp             HHHHH-C---TTCSSEEEEEECGGGSCTTCCCHHHHTT-CSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred             HHHHh-C---CCCCeEEEEEEccccCCCCchHHHHHhC-CcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence            44433 2   24689999999999976433 2222211 001111112478999999999999999998763

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.87  E-value=1.2e-23  Score=161.06  Aligned_cols=157  Identities=16%  Similarity=0.164  Sum_probs=91.6

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhhcCC--cc--------------------------------ccccccceeEEEEEE
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLKLGE--IV--------------------------------TTIPTIGFNVETVEY   57 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~--~~--------------------------------~~~~t~~~~~~~~~~   57 (180)
                      .....+||+++|+.++|||||+++|+...  +.                                ....|++..+..+..
T Consensus        39 ~~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~  118 (467)
T 1r5b_A           39 YGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET  118 (467)
T ss_dssp             SCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC
T ss_pred             cCCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec
Confidence            45678999999999999999999997421  10                                123466666666777


Q ss_pred             cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChh---hHHHHHHHHHHHhcccccCCCe-EEEEEecCCCCCCC
Q 030289           58 KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRE---RIGEAKDELHRMLSEDELREAV-LLVFANKQDLPNAM  133 (180)
Q Consensus        58 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~-iiiv~nK~D~~~~~  133 (180)
                      .+..+.+|||||++.|...+..++..+|++++|+|+++..   +|+...++...+... ...++| +++++||+|+.+..
T Consensus       119 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~-~~~~vp~iivviNK~Dl~~~~  197 (467)
T 1r5b_A          119 EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLA-RTQGINHLVVVINKMDEPSVQ  197 (467)
T ss_dssp             SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHH-HHTTCSSEEEEEECTTSTTCS
T ss_pred             CCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHH-HHcCCCEEEEEEECccCCCcc
Confidence            8899999999999999988888999999999999998752   222111222111111 123566 99999999996421


Q ss_pred             -C---HhH----HHhHhCCC-ccC-CcceEEEEeeccCCCChHHHH
Q 030289          134 -S---VSE----VTDKLGLH-SLR-QRRWYIQAACATSGQGLYEGL  169 (180)
Q Consensus       134 -~---~~~----~~~~~~~~-~~~-~~~~~~~~~Sa~~~~~i~~~~  169 (180)
                       +   .++    +...+... .+. ..+++++++||++|.|+++++
T Consensus       198 ~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          198 WSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             ccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence             1   111    11111100 111 125789999999999998755

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.87  E-value=1.7e-21  Score=150.76  Aligned_cols=114  Identities=21%  Similarity=0.217  Sum_probs=84.4

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC--cc-----------------------ccccccceeEEEEEEcCeEEEEEEcC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE--IV-----------------------TTIPTIGFNVETVEYKNVSFTVWDVG   68 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~--~~-----------------------~~~~t~~~~~~~~~~~~~~~~i~D~~   68 (180)
                      .+..||+++|++|+|||||+++|+...  ..                       ....|+......+...+..+.+||||
T Consensus        11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP   90 (529)
T 2h5e_A           11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP   90 (529)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence            567999999999999999999998632  10                       01113334455677788999999999


Q ss_pred             CCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC
Q 030289           69 GQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA  132 (180)
Q Consensus        69 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~  132 (180)
                      |+..|...+..+++.+|++++|+|+++.... .....+... .   ..++|+++++||+|+...
T Consensus        91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~-~t~~~~~~~-~---~~~ipiivviNK~Dl~~~  149 (529)
T 2h5e_A           91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVED-RTRKLMEVT-R---LRDTPILTFMNKLDRDIR  149 (529)
T ss_dssp             CSTTCCHHHHHGGGGCSEEEEEEETTTCSCH-HHHHHHHHH-T---TTTCCEEEEEECTTSCCS
T ss_pred             CChhHHHHHHHHHHHCCEEEEEEeCCccchH-HHHHHHHHH-H---HcCCCEEEEEcCcCCccc
Confidence            9999998888999999999999999875321 222222222 2   247899999999999764

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.87  E-value=3.5e-22  Score=152.64  Aligned_cols=152  Identities=16%  Similarity=0.124  Sum_probs=104.7

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcC--Ccc--------------------------------ccccccceeEEEEEEc
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLG--EIV--------------------------------TTIPTIGFNVETVEYK   58 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~--~~~--------------------------------~~~~t~~~~~~~~~~~   58 (180)
                      .+..++|+++|++++|||||+++|++.  .+.                                ....|++..+..+...
T Consensus         4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~   83 (458)
T 1f60_A            4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP   83 (458)
T ss_dssp             CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC
Confidence            356799999999999999999999853  111                                1234667777777888


Q ss_pred             CeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChh---hHH---HHHHHHHHHhcccccCCCe-EEEEEecCCCCC
Q 030289           59 NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRE---RIG---EAKDELHRMLSEDELREAV-LLVFANKQDLPN  131 (180)
Q Consensus        59 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~~-iiiv~nK~D~~~  131 (180)
                      +..+.+|||||++.|...+..++..+|++++|+|+++..   +++   ....++... .   ..++| +++++||+|+.+
T Consensus        84 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~-~---~~~v~~iivviNK~Dl~~  159 (458)
T 1f60_A           84 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLA-F---TLGVRQLIVAVNKMDSVK  159 (458)
T ss_dssp             SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHH-H---HTTCCEEEEEEECGGGGT
T ss_pred             CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHH-H---HcCCCeEEEEEEcccccc
Confidence            899999999999999999999999999999999998642   121   222222222 1   13454 999999999974


Q ss_pred             C--CCHhHHHhHh----CCCccCCcceEEEEeeccCCCChHHH
Q 030289          132 A--MSVSEVTDKL----GLHSLRQRRWYIQAACATSGQGLYEG  168 (180)
Q Consensus       132 ~--~~~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (180)
                      .  ...+++..+.    ....+....++++++||++|.|++++
T Consensus       160 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          160 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            1  1111221111    11111112468999999999998753

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.87  E-value=4.8e-23  Score=153.04  Aligned_cols=159  Identities=15%  Similarity=0.194  Sum_probs=85.0

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhhcCC-ccc-c--------ccccceeEEEEEE--c--CeEEEEEEcCCC-------
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLKLGE-IVT-T--------IPTIGFNVETVEY--K--NVSFTVWDVGGQ-------   70 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~-~--------~~t~~~~~~~~~~--~--~~~~~i~D~~G~-------   70 (180)
                      .....++|+++|++|+|||||+|+|++.. +.. +        .+|++.....+..  .  ...+.+|||||.       
T Consensus        33 ~~~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~  112 (361)
T 2qag_A           33 KKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCR  112 (361)
T ss_dssp             HHCCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-----------
T ss_pred             cCCCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccH
Confidence            34567999999999999999999987654 221 1        1455444433322  2  347999999998       


Q ss_pred             CCChhhHH-------hhccccC-------------EEEEEEECCChhhHHHHHH-HHHHHhcccccCCCeEEEEEecCCC
Q 030289           71 DKIRPLWR-------HYFQNTH-------------GLIFVVDSNDRERIGEAKD-ELHRMLSEDELREAVLLVFANKQDL  129 (180)
Q Consensus        71 ~~~~~~~~-------~~~~~~~-------------~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~iiiv~nK~D~  129 (180)
                      +.+..++.       .+++.++             +++|+++.. ..++..+.. ++..+ .    .++|+++|+||+|+
T Consensus       113 e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l-~----~~~piIlV~NK~Dl  186 (361)
T 2qag_A          113 DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI-H----NKVNIVPVIAKADT  186 (361)
T ss_dssp             ---CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT-C----S-SCEEEEEECCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh-c----cCCCEEEEEECCCC
Confidence            66666655       6665543             455555431 344444443 33332 2    57899999999999


Q ss_pred             CCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHHhhh
Q 030289          130 PNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  178 (180)
                      .+.......... ....+...+++++++||+++.+ ++.|.++.+.+.+
T Consensus       187 ~~~~ev~~~k~~-i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~  233 (361)
T 2qag_A          187 LTLKERERLKKR-ILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKA  233 (361)
T ss_dssp             SCHHHHHHHHHH-HHHHTTCC-CCSCCCC----------CHHHHHHHHH
T ss_pred             CCHHHHHHHHHH-HHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHh
Confidence            874433322111 1122344567899999999998 8888888777654

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.85  E-value=3.9e-23  Score=161.93  Aligned_cols=162  Identities=20%  Similarity=0.170  Sum_probs=89.6

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhhcCC--cc--------------------------------ccccccceeEEEEEE
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLKLGE--IV--------------------------------TTIPTIGFNVETVEY   57 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~--~~--------------------------------~~~~t~~~~~~~~~~   57 (180)
                      .....+||+++|++++|||||+++|+...  ..                                ....|++.....+..
T Consensus       173 ~~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~  252 (592)
T 3mca_A          173 NPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES  252 (592)
T ss_dssp             CCCCEEEEEEECCSSSTHHHHHHHHHHHHHCC------------------------------------------------
T ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe
Confidence            34667899999999999999999996421  00                                112255555556666


Q ss_pred             cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChh---hH--HHHHHHHHHHhcccccCCCe-EEEEEecCCCCC
Q 030289           58 KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRE---RI--GEAKDELHRMLSEDELREAV-LLVFANKQDLPN  131 (180)
Q Consensus        58 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~--~~~~~~~~~~~~~~~~~~~~-iiiv~nK~D~~~  131 (180)
                      .+..+.+|||||+..|...+..++..+|++|+|+|+++..   .+  ......+..++..   .++| +++|+||+|+.+
T Consensus       253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~---lgip~iIvviNKiDl~~  329 (592)
T 3mca_A          253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA---LGISEIVVSVNKLDLMS  329 (592)
T ss_dssp             ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH---SSCCCEEEEEECGGGGT
T ss_pred             CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH---cCCCeEEEEEecccccc
Confidence            7789999999999999888888889999999999997532   11  1111111112221   2454 999999999875


Q ss_pred             CC--CHh----HHHhHh-CCCccCCcceEEEEeeccCCCChH--------------HHHHHHHHHh
Q 030289          132 AM--SVS----EVTDKL-GLHSLRQRRWYIQAACATSGQGLY--------------EGLDWLSSNV  176 (180)
Q Consensus       132 ~~--~~~----~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~i~--------------~~~~~l~~~~  176 (180)
                      ..  ..+    ++...+ ....+....++++++||++|.||+              ++++.|.+.+
T Consensus       330 ~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~  395 (592)
T 3mca_A          330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV  395 (592)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred             ccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhc
Confidence            21  122    222232 222233346789999999999998              6777776543

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.85  E-value=1e-20  Score=150.75  Aligned_cols=115  Identities=22%  Similarity=0.134  Sum_probs=88.2

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCC--c------------c-------ccccccceeEEEEEEcCeEEEEEEcCCCC
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGE--I------------V-------TTIPTIGFNVETVEYKNVSFTVWDVGGQD   71 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~--~------------~-------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~   71 (180)
                      ..+..||+|+|++|+|||||+++|+...  .            .       ...+|+......+...+..+.+|||||+.
T Consensus         9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~   88 (691)
T 1dar_A            9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHV   88 (691)
T ss_dssp             GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSST
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCcc
Confidence            4668899999999999999999998311  0            0       22456666667777789999999999999


Q ss_pred             CChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC
Q 030289           72 KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA  132 (180)
Q Consensus        72 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~  132 (180)
                      .+...+..+++.+|++++|+|+++....+....|.. ...    .++|+++|+||+|+...
T Consensus        89 df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~----~~~p~ivviNKiD~~~~  144 (691)
T 1dar_A           89 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK----YKVPRIAFANKMDKTGA  144 (691)
T ss_dssp             TCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH----TTCCEEEEEECTTSTTC
T ss_pred             chHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH----cCCCEEEEEECCCcccC
Confidence            999999999999999999999998766655554443 222    47899999999998764

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.85  E-value=2e-21  Score=159.03  Aligned_cols=160  Identities=17%  Similarity=0.133  Sum_probs=108.0

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCC-------cc------------ccccccceeEEEEEEcCeEEEEEEcCCCCCC
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGE-------IV------------TTIPTIGFNVETVEYKNVSFTVWDVGGQDKI   73 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~-------~~------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~   73 (180)
                      ....+||+++|++++|||||+++|++..       ..            +...|+......+...+..+.+|||||++.|
T Consensus       293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF  372 (1289)
T 3avx_A          293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY  372 (1289)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred             cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence            3567899999999999999999998631       00            1112333444455567789999999999999


Q ss_pred             hhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCe-EEEEEecCCCCCCCC-Hh----HHHhHhCCCcc
Q 030289           74 RPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV-LLVFANKQDLPNAMS-VS----EVTDKLGLHSL  147 (180)
Q Consensus        74 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iiiv~nK~D~~~~~~-~~----~~~~~~~~~~~  147 (180)
                      ...+..++..+|++++|+|+++... .....++..+..    .++| +++++||+|+.+... .+    ++.+.+....+
T Consensus       373 ~~~mi~gas~AD~aILVVDAtdGv~-~QTrEhL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~  447 (1289)
T 3avx_A          373 VKNMITGAAQMDGAILVVAATDGPM-PQTREHILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDF  447 (1289)
T ss_dssp             HHHHHHTSCCCSEEEEEEETTTCSC-TTHHHHHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHhhCCEEEEEEcCCccCc-HHHHHHHHHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccc
Confidence            8888899999999999999987532 223333333321    3577 899999999986321 11    12111111111


Q ss_pred             CCcceEEEEeeccCC--------CChHHHHHHHHHHhh
Q 030289          148 RQRRWYIQAACATSG--------QGLYEGLDWLSSNVS  177 (180)
Q Consensus       148 ~~~~~~~~~~Sa~~~--------~~i~~~~~~l~~~~~  177 (180)
                      ....++++++||++|        .|++++++.+.+.+.
T Consensus       448 ~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip  485 (1289)
T 3avx_A          448 PGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP  485 (1289)
T ss_dssp             CTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred             cccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence            223468999999999        468899998887553

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.84  E-value=1.3e-20  Score=130.11  Aligned_cols=156  Identities=17%  Similarity=0.148  Sum_probs=97.1

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhhcCC-cccccccccee--EEEEEEcCeEEEEEEcCCCCC----------ChhhHH
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFN--VETVEYKNVSFTVWDVGGQDK----------IRPLWR   78 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~--~~~~~~~~~~~~i~D~~G~~~----------~~~~~~   78 (180)
                      ......+|+++|++|||||||+|+|++.. .....++.+..  ...+...+ .+.+|||||...          +.....
T Consensus        22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  100 (210)
T 1pui_A           22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALG  100 (210)
T ss_dssp             SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence            34667899999999999999999999776 23333444422  22333333 688999999743          122233


Q ss_pred             hhc---cccCEEEEEEECCChhhHH--HHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC----HhHHHhHhCCCccCC
Q 030289           79 HYF---QNTHGLIFVVDSNDRERIG--EAKDELHRMLSEDELREAVLLVFANKQDLPNAMS----VSEVTDKLGLHSLRQ  149 (180)
Q Consensus        79 ~~~---~~~~~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~----~~~~~~~~~~~~~~~  149 (180)
                      .++   ..++++++++|+.++.+..  .+..|+.       ..+.|+++++||+|+.+...    ..........   ..
T Consensus       101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~-------~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~---~~  170 (210)
T 1pui_A          101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV-------DSNIAVLVLLTKADKLASGARKAQLNMVREAVLA---FN  170 (210)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH-------HTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGG---GC
T ss_pred             HHHHhhhcccEEEEEEECCCCCchhHHHHHHHHH-------HcCCCeEEEEecccCCCchhHHHHHHHHHHHHHh---cC
Confidence            444   4689999999998754432  1222221       24678999999999876321    1122222110   12


Q ss_pred             cceEEEEeeccCCCChHHHHHHHHHHhhh
Q 030289          150 RRWYIQAACATSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       150 ~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  178 (180)
                      ..+.++++|++++.|++++++.+.+.+.+
T Consensus       171 ~~~~~~~~Sal~~~~~~~l~~~l~~~~~~  199 (210)
T 1pui_A          171 GDVQVETFSSLKKQGVDKLRQKLDTWFSE  199 (210)
T ss_dssp             SCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred             CCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence            24678999999999999999999887644

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.84  E-value=2.1e-20  Score=133.41  Aligned_cols=117  Identities=12%  Similarity=0.129  Sum_probs=82.0

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCc--ccccc--ccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhcc-------
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQ-------   82 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~-------   82 (180)
                      ++.++|+++|++|+|||||+|+|++...  ....+  |.......+...+..+.+|||||+..+......+++       
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~  113 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLV  113 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHh
Confidence            4789999999999999999999998773  22222  455666677788999999999998776544333332       


Q ss_pred             --ccCEEEEEEECCChhhHHHH-HHHHHHHhccc-ccCCCeEEEEEecCCCCC
Q 030289           83 --NTHGLIFVVDSNDRERIGEA-KDELHRMLSED-ELREAVLLVFANKQDLPN  131 (180)
Q Consensus        83 --~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~-~~~~~~iiiv~nK~D~~~  131 (180)
                        ++|++++|++++... +... ..|+..+.... .....|+++|+||+|+.+
T Consensus       114 ~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~  165 (262)
T 3def_A          114 NRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP  165 (262)
T ss_dssp             TCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred             cCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence              789999999987543 3222 34444433221 112348999999999853

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.83  E-value=2.3e-21  Score=144.68  Aligned_cols=133  Identities=24%  Similarity=0.374  Sum_probs=105.7

Q ss_pred             cccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCC----------hhhHHHHHHHHHHHhccccc
Q 030289           46 PTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSND----------RERIGEAKDELHRMLSEDEL  115 (180)
Q Consensus        46 ~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~  115 (180)
                      +|+|+....+.++++.+++|||+|++.++..|..++++++++|+|||+++          ..+++....|+..+......
T Consensus       203 ~TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~  282 (402)
T 1azs_C          203 LTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWL  282 (402)
T ss_dssp             CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTC
T ss_pred             ceeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccC
Confidence            47778888888899999999999999999999999999999999999998          88999999999999877666


Q ss_pred             CCCeEEEEEecCCCCCCC------C--------------------------HhHHHhHh-----CC---CccCCcceEEE
Q 030289          116 REAVLLVFANKQDLPNAM------S--------------------------VSEVTDKL-----GL---HSLRQRRWYIQ  155 (180)
Q Consensus       116 ~~~~iiiv~nK~D~~~~~------~--------------------------~~~~~~~~-----~~---~~~~~~~~~~~  155 (180)
                      .++|+++|+||+|+..+.      .                          .++.....     ..   .......+.++
T Consensus       283 ~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~  362 (402)
T 1azs_C          283 RTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPH  362 (402)
T ss_dssp             SSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEE
T ss_pred             CCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEE
Confidence            789999999999974310      0                          11111100     00   00012357889


Q ss_pred             EeeccCCCChHHHHHHHHHHhhh
Q 030289          156 AACATSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       156 ~~Sa~~~~~i~~~~~~l~~~~~~  178 (180)
                      +|||+++.||+++|.++.+.+.+
T Consensus       363 ~TSA~d~~nV~~vF~~v~~~I~~  385 (402)
T 1azs_C          363 FTCAVDTENIRRVFNDCRDIIQR  385 (402)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             EEEeecCcCHHHHHHHHHHHHHH
Confidence            99999999999999999887764

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.83  E-value=3.3e-20  Score=147.89  Aligned_cols=162  Identities=19%  Similarity=0.241  Sum_probs=107.7

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhhcCC--ccccccccce----eE-----EEEEE-----------------------
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIPTIGF----NV-----ETVEY-----------------------   57 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~--~~~~~~t~~~----~~-----~~~~~-----------------------   57 (180)
                      .....++|+|+|++|+|||||+|+|++..  .....|++..    .+     .+...                       
T Consensus        65 l~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~  144 (695)
T 2j69_A           65 LQQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPA  144 (695)
T ss_dssp             HHHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHH
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHH
Confidence            35679999999999999999999999876  2233343310    00     01111                       


Q ss_pred             -----------------------c----CeEEEEEEcCCCCC---ChhhHHhhccccCEEEEEEECCChhhHHHHHHHHH
Q 030289           58 -----------------------K----NVSFTVWDVGGQDK---IRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELH  107 (180)
Q Consensus        58 -----------------------~----~~~~~i~D~~G~~~---~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~  107 (180)
                                             .    +..+.+|||||...   ....+..+++++|++++|+|++++.+......|..
T Consensus       145 ~~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~  224 (695)
T 2j69_A          145 EAKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLEN  224 (695)
T ss_dssp             HHHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHH
T ss_pred             HHHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHH
Confidence                                   0    03689999999443   34567788899999999999988766665554443


Q ss_pred             HHhcccccCCCeEEEEEecCCCCCCC-----CHhH-------HHh----HhCCCccC-----CcceEEEEeecc------
Q 030289          108 RMLSEDELREAVLLVFANKQDLPNAM-----SVSE-------VTD----KLGLHSLR-----QRRWYIQAACAT------  160 (180)
Q Consensus       108 ~~~~~~~~~~~~iiiv~nK~D~~~~~-----~~~~-------~~~----~~~~~~~~-----~~~~~~~~~Sa~------  160 (180)
                      .+ ..   .+.|+++|+||+|+....     ..++       +..    .+. ....     ....+++++||+      
T Consensus       225 ~l-~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~-~~~~~~g~~~~~~~v~~vSAk~al~~~  299 (695)
T 2j69_A          225 YI-KG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLA-EYCTVEGQNIYDERVFELSSIQALRRR  299 (695)
T ss_dssp             HT-TT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHG-GGGBSSSCBCGGGTEEECCHHHHHHHH
T ss_pred             HH-Hh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHH-HhhcccccccCCCcEEEEeChHHHHhh
Confidence            33 22   367899999999986432     1111       111    111 1111     123468999999      


Q ss_pred             --------CCCChHHHHHHHHHHhhh
Q 030289          161 --------SGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       161 --------~~~~i~~~~~~l~~~~~~  178 (180)
                              ++.|+++++..+.+.+..
T Consensus       300 ~~~~~~~~~~~Gi~~L~~~L~~~l~~  325 (695)
T 2j69_A          300 LKNPQADLDGTGFPKFMDSLNTFLTR  325 (695)
T ss_dssp             HHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred             ccCchhhhhccCHHHHHHHHHHHHHH
Confidence                    999999999999887643

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.83  E-value=3.6e-19  Score=141.94  Aligned_cols=115  Identities=19%  Similarity=0.112  Sum_probs=87.7

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcC--Ccc-------------------ccccccceeEEEEEEcCeEEEEEEcCCCC
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLG--EIV-------------------TTIPTIGFNVETVEYKNVSFTVWDVGGQD   71 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~--~~~-------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~   71 (180)
                      ..+..+|+|+|++|+|||||+|+|+..  ...                   ....|+......+...+..+.+|||||+.
T Consensus         7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~   86 (693)
T 2xex_A            7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV   86 (693)
T ss_dssp             STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence            466789999999999999999999841  110                   11235555566677788999999999999


Q ss_pred             CChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC
Q 030289           72 KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA  132 (180)
Q Consensus        72 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~  132 (180)
                      .+...+..+++.+|++++|+|+++....+....|. .+..    .++|+++|+||+|+...
T Consensus        87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~----~~~p~ilviNK~Dl~~~  142 (693)
T 2xex_A           87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATT----YGVPRIVFVNKMDKLGA  142 (693)
T ss_dssp             SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHH----TTCCEEEEEECTTSTTC
T ss_pred             chHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHH----cCCCEEEEEECCCcccc
Confidence            99988999999999999999998866655544443 2322    37899999999999764

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.82  E-value=8.2e-20  Score=133.53  Aligned_cols=161  Identities=16%  Similarity=0.135  Sum_probs=96.9

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCc-cccc-c-ccce---eE-----------------------------------
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEI-VTTI-P-TIGF---NV-----------------------------------   52 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~-~-t~~~---~~-----------------------------------   52 (180)
                      ....+|+|+|++|||||||+|+|++... .... . |...   ..                                   
T Consensus        22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (315)
T 1jwy_B           22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE  101 (315)
T ss_dssp             TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence            4567999999999999999999998763 1111 0 0000   00                                   


Q ss_pred             -------------------EE---EEEcCeEEEEEEcCCCCC-------------ChhhHHhhccccCEEEEEEECCChh
Q 030289           53 -------------------ET---VEYKNVSFTVWDVGGQDK-------------IRPLWRHYFQNTHGLIFVVDSNDRE   97 (180)
Q Consensus        53 -------------------~~---~~~~~~~~~i~D~~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~   97 (180)
                                         ..   ......++.+|||||...             +......++.++|++++|+|..+..
T Consensus       102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~  181 (315)
T 1jwy_B          102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD  181 (315)
T ss_dssp             HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred             HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence                               00   111346799999999754             3456778889999999999974332


Q ss_pred             hHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC-HhHHHhHhCCCccCCcceEEEEeeccC---CCChHHHHHHHH
Q 030289           98 RIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS-VSEVTDKLGLHSLRQRRWYIQAACATS---GQGLYEGLDWLS  173 (180)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~~~~~l~  173 (180)
                      ........+...+..   .+.|+++|+||+|+.+... ..+.... ..........+++.+|+.+   +.|++++++.+.
T Consensus       182 ~~~~~~~~i~~~~~~---~~~~~i~v~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~  257 (315)
T 1jwy_B          182 LANSDALQLAKEVDP---EGKRTIGVITKLDLMDKGTDAMEVLTG-RVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEI  257 (315)
T ss_dssp             STTCSHHHHHHHHCS---SCSSEEEEEECTTSSCSSCCCHHHHTT-SSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHH
T ss_pred             hhhhHHHHHHHHhCC---CCCcEEEEEcCcccCCcchHHHHHHhC-CCccCCCCeEEEecCChhhhccCCCHHHHHHHHH
Confidence            111111112222222   4689999999999876443 2222211 0011101123555666666   789999999988


Q ss_pred             HHhhh
Q 030289          174 SNVSA  178 (180)
Q Consensus       174 ~~~~~  178 (180)
                      +.+..
T Consensus       258 ~~~~~  262 (315)
T 1jwy_B          258 LYFKN  262 (315)
T ss_dssp             HHHHT
T ss_pred             HHHhC
Confidence            77654

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.82  E-value=4e-19  Score=141.83  Aligned_cols=115  Identities=16%  Similarity=0.026  Sum_probs=85.8

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCC--cc-------------------ccccccceeEEEEEEcC-------eEEEE
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGE--IV-------------------TTIPTIGFNVETVEYKN-------VSFTV   64 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~--~~-------------------~~~~t~~~~~~~~~~~~-------~~~~i   64 (180)
                      ..+..||+|+|+.|+|||||+++|+...  ..                   +...|+......+...+       +.+.+
T Consensus         7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l   86 (704)
T 2rdo_7            7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI   86 (704)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence            4678899999999999999999997431  11                   11224444445555555       89999


Q ss_pred             EEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC
Q 030289           65 WDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA  132 (180)
Q Consensus        65 ~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~  132 (180)
                      |||||+..|...+..+++.+|++++|+|+++....+....| ....    ..++|+++|+||+|+...
T Consensus        87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~----~~~ip~ilviNKiD~~~~  149 (704)
T 2rdo_7           87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQAN----KYKVPRIAFVNKMDRMGA  149 (704)
T ss_pred             EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHH----HcCCCEEEEEeCCCcccc
Confidence            99999999998999999999999999999876544333333 2222    246899999999998753

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.82  E-value=2.2e-19  Score=142.60  Aligned_cols=112  Identities=15%  Similarity=0.133  Sum_probs=84.3

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCcc--------------c-------cccccceeEEEEEEcCeEEEEEEcCCCCC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEIV--------------T-------TIPTIGFNVETVEYKNVSFTVWDVGGQDK   72 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~--------------~-------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~   72 (180)
                      .+..+|+|+|++|+|||||+++|++....              .       ...|+......+...++.+.+|||||+..
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~   86 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD   86 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence            56789999999999999999999842210              0       11244445556666889999999999999


Q ss_pred             ChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCC
Q 030289           73 IRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP  130 (180)
Q Consensus        73 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~  130 (180)
                      +...+..+++.+|++++|+|+.+.-..+ ...++.....    .++|+++++||+|+.
T Consensus        87 f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~----~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           87 FVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAER----LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred             hHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHH----ccCCEEEEecCCchh
Confidence            9888999999999999999987643322 2234433322    368999999999987

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.82  E-value=2.9e-19  Score=134.35  Aligned_cols=157  Identities=23%  Similarity=0.236  Sum_probs=108.9

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCCc--ccc-ccccceeEEEEEEcC-eEEEEEEcCCCCCC-------hhhHHhhccccC
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGEI--VTT-IPTIGFNVETVEYKN-VSFTVWDVGGQDKI-------RPLWRHYFQNTH   85 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~~--~~~-~~t~~~~~~~~~~~~-~~~~i~D~~G~~~~-------~~~~~~~~~~~~   85 (180)
                      -.|+++|++|||||||++++++...  ..+ ..|.......+...+ ..+.+||+||....       .........+++
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~  237 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR  237 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence            4689999999999999999987752  111 124455555666654 78999999997432       111222345799


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhccc-ccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCC
Q 030289           86 GLIFVVDSNDRERIGEAKDELHRMLSED-ELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQG  164 (180)
Q Consensus        86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  164 (180)
                      .++.++|++ .+.+..+..+..+..... .....|.++++||+|+......+++....     ...+.+++.+||++++|
T Consensus       238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l-----~~~g~~vi~iSA~~g~g  311 (416)
T 1udx_A          238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADAL-----AREGLAVLPVSALTGAG  311 (416)
T ss_dssp             EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHH-----HTTTSCEEECCTTTCTT
T ss_pred             hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHH-----HhcCCeEEEEECCCccC
Confidence            999999997 556666666655554332 12357899999999987642222222222     12345799999999999


Q ss_pred             hHHHHHHHHHHhhhc
Q 030289          165 LYEGLDWLSSNVSAK  179 (180)
Q Consensus       165 i~~~~~~l~~~~~~~  179 (180)
                      ++++++++.+.+.+.
T Consensus       312 i~eL~~~i~~~l~~~  326 (416)
T 1udx_A          312 LPALKEALHALVRST  326 (416)
T ss_dssp             HHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999988653

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.79  E-value=1.1e-18  Score=124.96  Aligned_cols=118  Identities=11%  Similarity=0.083  Sum_probs=79.2

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCcccc--c--cccceeEEEEEEcCeEEEEEEcCCCCCChhh-------HHhh--
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEIVTT--I--PTIGFNVETVEYKNVSFTVWDVGGQDKIRPL-------WRHY--   80 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~--~--~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~~--   80 (180)
                      ...++|+++|.+|+|||||+|+|++......  .  .|.......+...+..+.+|||||...+...       ...+  
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~  116 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL  116 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence            3579999999999999999999998773221  1  1333444556668899999999998665321       1122  


Q ss_pred             ccccCEEEEEEECCChhhHHHH-HHHHHHHhcccc-cCCCeEEEEEecCCCCCC
Q 030289           81 FQNTHGLIFVVDSNDRERIGEA-KDELHRMLSEDE-LREAVLLVFANKQDLPNA  132 (180)
Q Consensus        81 ~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~-~~~~~iiiv~nK~D~~~~  132 (180)
                      .+.+|++++|+|++.. ++... ..|+..+..... ....|+++|+||+|+.++
T Consensus       117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~  169 (270)
T 1h65_A          117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP  169 (270)
T ss_dssp             TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred             cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence            2479999999998653 23322 344444432211 112689999999998753

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.78  E-value=4.5e-19  Score=131.88  Aligned_cols=149  Identities=14%  Similarity=0.174  Sum_probs=95.4

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCCc-ccccccc--ce-----------------------------------------
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTI--GF-----------------------------------------   50 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~--~~-----------------------------------------   50 (180)
                      .-..|+|+|++|||||||+|+|++..+ +....++  ..                                         
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~  112 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD  112 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence            344999999999999999999998663 1111100  00                                         


Q ss_pred             -----------eEEEEEE---cCeEEEEEEcCCCCCC-------------hhhHHhhccccCEEEEEEECCChhhH-HHH
Q 030289           51 -----------NVETVEY---KNVSFTVWDVGGQDKI-------------RPLWRHYFQNTHGLIFVVDSNDRERI-GEA  102 (180)
Q Consensus        51 -----------~~~~~~~---~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~~~-~~~  102 (180)
                                 ....+.+   ....+.+|||||...+             ......+++++|++++|+|..+.+.. ...
T Consensus       113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~  192 (360)
T 3t34_A          113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDA  192 (360)
T ss_dssp             HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHH
T ss_pred             HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHH
Confidence                       0001111   2457899999997775             66788899999999999987543322 222


Q ss_pred             HHHHHHHhcccccCCCeEEEEEecCCCCCCCC-HhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHH
Q 030289          103 KDELHRMLSEDELREAVLLVFANKQDLPNAMS-VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDW  171 (180)
Q Consensus       103 ~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  171 (180)
                      ..++..+    ...+.|+++|+||+|+.+... ..+....    .....+.+|+.+|+.++.++++.+..
T Consensus       193 ~~l~~~~----~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~----~~~~~~~~~~~v~~~s~~~i~~~~~~  254 (360)
T 3t34_A          193 IKISREV----DPSGDRTFGVLTKIDLMDKGTDAVEILEG----RSFKLKYPWVGVVNRSQADINKNVDM  254 (360)
T ss_dssp             HHHHHHS----CTTCTTEEEEEECGGGCCTTCCSHHHHTT----SSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred             HHHHHHh----cccCCCEEEEEeCCccCCCcccHHHHHcC----ccccccCCeEEEEECChHHhccCCCH
Confidence            2222222    224678999999999876432 2222211    22344567999999998888765544

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.77  E-value=6e-19  Score=130.89  Aligned_cols=155  Identities=18%  Similarity=0.165  Sum_probs=94.7

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCcc-------ccccc----------------------c----------------
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEIV-------TTIPT----------------------I----------------   48 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~-------~~~~t----------------------~----------------   48 (180)
                      ....+|+|+|.+|||||||+|+|++.++.       +..|+                      .                
T Consensus        29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i  108 (353)
T 2x2e_A           29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  108 (353)
T ss_dssp             CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence            44679999999999999999999987632       11122                      0                


Q ss_pred             -----ceeE----EEEEE-cCeEEEEEEcCCCCC-------------ChhhHHhhccccCEE-EEEEECCChhhHHHHHH
Q 030289           49 -----GFNV----ETVEY-KNVSFTVWDVGGQDK-------------IRPLWRHYFQNTHGL-IFVVDSNDRERIGEAKD  104 (180)
Q Consensus        49 -----~~~~----~~~~~-~~~~~~i~D~~G~~~-------------~~~~~~~~~~~~~~~-i~v~d~~~~~~~~~~~~  104 (180)
                           ++..    ..+.. ....+.+|||||...             +......++.+++.+ +++.+++..-.-.....
T Consensus       109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~  188 (353)
T 2x2e_A          109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  188 (353)
T ss_dssp             HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred             cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence                 0000    01111 246899999999532             344566777666655 55556553211112222


Q ss_pred             HHHHHhcccccCCCeEEEEEecCCCCCCCC-HhHHHhHhCCCccCCcc-eEEEEeeccCCCChHHHHHHHHH
Q 030289          105 ELHRMLSEDELREAVLLVFANKQDLPNAMS-VSEVTDKLGLHSLRQRR-WYIQAACATSGQGLYEGLDWLSS  174 (180)
Q Consensus       105 ~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~  174 (180)
                      ++..+ .   ..+.|+++|+||+|+.+... ..+...  ........+ .+++++||+++.|++++++.+.+
T Consensus       189 i~~~~-~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~--~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          189 VAKEV-D---PQGQRTIGVITKLDLMDEGTDARDVLE--NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHHH-C---TTCTTEEEEEECGGGSCTTCCCHHHHT--TCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHHh-C---cCCCceEEEeccccccCcchhHHHHHh--CCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            33333 2   24789999999999976432 222222  111111223 47899999999999999998876

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.77  E-value=9.2e-20  Score=132.35  Aligned_cols=160  Identities=16%  Similarity=0.182  Sum_probs=80.1

Q ss_pred             hcccCccEEEEEcCCCCChHHHHHHhhcC-Ccc-cc--------ccccceeEEEEEE----cCeEEEEEEcCCC------
Q 030289           11 LFARKEMRILMVGLDAAGKTTILYKLKLG-EIV-TT--------IPTIGFNVETVEY----KNVSFTVWDVGGQ------   70 (180)
Q Consensus        11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~-~~~-~~--------~~t~~~~~~~~~~----~~~~~~i~D~~G~------   70 (180)
                      ....-.++|+++|++|||||||+++|++. ... ..        .+|.......+..    ....+.+||++|.      
T Consensus        13 ~l~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~   92 (301)
T 2qnr_A           13 VKKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINC   92 (301)
T ss_dssp             -----CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC--------
T ss_pred             EEcCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCc
Confidence            44566799999999999999999998765 322 11        1233222222222    3468999999997      


Q ss_pred             -CCChhhHH-------hhcccc-------------CEEEEEEECCChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCC
Q 030289           71 -DKIRPLWR-------HYFQNT-------------HGLIFVVDSNDRERIGEAK-DELHRMLSEDELREAVLLVFANKQD  128 (180)
Q Consensus        71 -~~~~~~~~-------~~~~~~-------------~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D  128 (180)
                       +.+.....       .+++..             ++++++.+++. .+++... ..+..+     ....++++|+||+|
T Consensus        93 ~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l-----~~~~~iilV~~K~D  166 (301)
T 2qnr_A           93 RDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAI-----HNKVNIVPVIAKAD  166 (301)
T ss_dssp             ---CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHH-----TTTSCEEEEECCGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHH-----HhcCCEEEEEEeCC
Confidence             55555544       444433             33555554432 1222222 233332     13578999999999


Q ss_pred             CCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHHhhh
Q 030289          129 LPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  178 (180)
                      +.+........ ......+...+++++++||+++ |++++|.++.+.+.+
T Consensus       167 l~~~~e~~~~~-~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~  214 (301)
T 2qnr_A          167 TLTLKERERLK-KRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA  214 (301)
T ss_dssp             GSCHHHHHHHH-HHHHHHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred             CCCHHHHHHHH-HHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence            87643221111 1111223344678999999999 999999999988764

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.75  E-value=5e-19  Score=132.72  Aligned_cols=80  Identities=28%  Similarity=0.289  Sum_probs=47.0

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCC-ccccc--cccceeEEEEE---------------------Ec---CeEEEEEEcCC
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGE-IVTTI--PTIGFNVETVE---------------------YK---NVSFTVWDVGG   69 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~-~~~~~--~t~~~~~~~~~---------------------~~---~~~~~i~D~~G   69 (180)
                      ++|+++|.+|||||||+|+|++.. .....  .|.........                     ..   ..++.+|||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            589999999999999999999876 22222  23333333211                     11   36899999999


Q ss_pred             CCC----ChhhHH---hhccccCEEEEEEECCCh
Q 030289           70 QDK----IRPLWR---HYFQNTHGLIFVVDSNDR   96 (180)
Q Consensus        70 ~~~----~~~~~~---~~~~~~~~~i~v~d~~~~   96 (180)
                      ...    ...+..   .+++++|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            753    222333   346889999999999764

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.75  E-value=9.4e-19  Score=129.87  Aligned_cols=153  Identities=16%  Similarity=0.165  Sum_probs=95.1

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcC------C--cccccccc---------------------ceeEE-----------
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLG------E--IVTTIPTI---------------------GFNVE-----------   53 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~------~--~~~~~~t~---------------------~~~~~-----------   53 (180)
                      .+.++|+++|.+|+|||||+++|...      +  .....+..                     +....           
T Consensus        77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~  156 (355)
T 3p32_A           77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGV  156 (355)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccch
Confidence            45789999999999999999999632      1  00101000                     00000           


Q ss_pred             ---------EEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEE
Q 030289           54 ---------TVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFA  124 (180)
Q Consensus        54 ---------~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~  124 (180)
                               .+...+..+.+|||||...   ........+|++++|+|....+.++.+..         .....|.++|+
T Consensus       157 ~~~t~d~i~~~~~~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~---------~~~~~p~ivVl  224 (355)
T 3p32_A          157 TRATRETVVLLEAAGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK---------GVLELADIVVV  224 (355)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT---------TSGGGCSEEEE
T ss_pred             hHHHHHHHHHHhhCCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH---------hHhhcCCEEEE
Confidence                     0011467899999999432   33344588999999999876544322211         11245889999


Q ss_pred             ecCCCCCCCCHh----HHHhHhCCCc--cCCcceEEEEeeccCCCChHHHHHHHHHHhhh
Q 030289          125 NKQDLPNAMSVS----EVTDKLGLHS--LRQRRWYIQAACATSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       125 nK~D~~~~~~~~----~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  178 (180)
                      ||+|+.+.....    ++...+....  ....+.+++++||++|.|++++++++.+.+..
T Consensus       225 NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          225 NKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             ECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             ECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            999987532222    2222211000  01123579999999999999999999887653

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.73  E-value=6.2e-18  Score=131.63  Aligned_cols=121  Identities=21%  Similarity=0.275  Sum_probs=83.4

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCc----cccccccceeEEEEE---------------------------------
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEI----VTTIPTIGFNVETVE---------------------------------   56 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~----~~~~~t~~~~~~~~~---------------------------------   56 (180)
                      ....+|+|+|.+|+|||||+|+|++...    ....|++........                                 
T Consensus        63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~  142 (550)
T 2qpt_A           63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR  142 (550)
T ss_dssp             SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence            4568999999999999999999998773    233333221100000                                 


Q ss_pred             -----EcC---eEEEEEEcCCCCC-----------ChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCC
Q 030289           57 -----YKN---VSFTVWDVGGQDK-----------IRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELRE  117 (180)
Q Consensus        57 -----~~~---~~~~i~D~~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  117 (180)
                           ...   ..+.+|||||...           +......++.++|++++|+|+++.........++..+..    .+
T Consensus       143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~  218 (550)
T 2qpt_A          143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG----HE  218 (550)
T ss_dssp             EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----CG
T ss_pred             ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----cC
Confidence                 000   3689999999764           446677788999999999999875444555566555422    35


Q ss_pred             CeEEEEEecCCCCCCCCHhHH
Q 030289          118 AVLLVFANKQDLPNAMSVSEV  138 (180)
Q Consensus       118 ~~iiiv~nK~D~~~~~~~~~~  138 (180)
                      .|+++|+||+|+.+...+.++
T Consensus       219 ~pvilVlNK~Dl~~~~el~~~  239 (550)
T 2qpt_A          219 DKIRVVLNKADMVETQQLMRV  239 (550)
T ss_dssp             GGEEEEEECGGGSCHHHHHHH
T ss_pred             CCEEEEEECCCccCHHHHHHH
Confidence            789999999999875444443

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.73  E-value=7.5e-17  Score=125.44  Aligned_cols=113  Identities=18%  Similarity=0.169  Sum_probs=85.6

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC------------------cc-------ccccccceeEEEEEEcCeEEEEEEcC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE------------------IV-------TTIPTIGFNVETVEYKNVSFTVWDVG   68 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~------------------~~-------~~~~t~~~~~~~~~~~~~~~~i~D~~   68 (180)
                      .+.-||+|+|+.++|||||..+|+...                  ..       +...|+......+.+++..+.++|||
T Consensus        29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTP  108 (548)
T 3vqt_A           29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTP  108 (548)
T ss_dssp             HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCC
T ss_pred             cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence            456799999999999999999996311                  01       11225566677888899999999999


Q ss_pred             CCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289           69 GQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN  131 (180)
Q Consensus        69 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~  131 (180)
                      |+..|..-....++-+|++|+|+|+...-.-+...-| .....    .++|.++++||+|...
T Consensus       109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~----~~lp~i~fINK~Dr~~  166 (548)
T 3vqt_A          109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRM----RATPVMTFVNKMDREA  166 (548)
T ss_dssp             CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHH----TTCCEEEEEECTTSCC
T ss_pred             CcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHH----hCCceEEEEecccchh
Confidence            9999999999999999999999999865333333333 33322    4789999999999865

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.73  E-value=2.3e-18  Score=125.06  Aligned_cols=131  Identities=19%  Similarity=0.118  Sum_probs=100.5

Q ss_pred             HHHHHhhcCCc--cccccccceeEEEEEE-cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChh-hHHHHHHHH
Q 030289           31 TILYKLKLGEI--VTTIPTIGFNVETVEY-KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRE-RIGEAKDEL  106 (180)
Q Consensus        31 tli~~l~~~~~--~~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~  106 (180)
                      +|++++..+.+  ..+.||++..+. +.. .+.++.+||+  +++++.+++.+++++|++++|||++++. ++..+..|+
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l  108 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFL  108 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHH
Confidence            68888887774  467799995443 333 2237999999  8999999999999999999999999987 678888888


Q ss_pred             HHHhcccccCCCeEEEEEecCCCCCCCCH---hHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHH
Q 030289          107 HRMLSEDELREAVLLVFANKQDLPNAMSV---SEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSS  174 (180)
Q Consensus       107 ~~~~~~~~~~~~~iiiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  174 (180)
                      ..+..    .++|+++|+||+|+.++...   .++.+...     .. .++++|||++|.|++++|..+..
T Consensus       109 ~~~~~----~~~piilv~NK~DL~~~~~v~~~~~~~~~~~-----~~-~~~~~~SAktg~gv~~lf~~l~g  169 (301)
T 1u0l_A          109 VLAEK----NELETVMVINKMDLYDEDDLRKVRELEEIYS-----GL-YPIVKTSAKTGMGIEELKEYLKG  169 (301)
T ss_dssp             HHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHT-----TT-SCEEECCTTTCTTHHHHHHHHSS
T ss_pred             HHHHH----CCCCEEEEEeHHHcCCchhHHHHHHHHHHHh-----hh-CcEEEEECCCCcCHHHHHHHhcC
Confidence            76532    47899999999999764332   22222222     11 57999999999999999988754

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.73  E-value=1.9e-17  Score=112.06  Aligned_cols=169  Identities=21%  Similarity=0.317  Sum_probs=113.1

Q ss_pred             hhhcccCccEEEEEcCC-CCChHHHHHHhhcCC-cc--cccc-----ccc--eeE-----EEEEE-----c---------
Q 030289            9 KMLFARKEMRILMVGLD-AAGKTTILYKLKLGE-IV--TTIP-----TIG--FNV-----ETVEY-----K---------   58 (180)
Q Consensus         9 ~~~~~~~~~~i~i~G~~-~~GKStli~~l~~~~-~~--~~~~-----t~~--~~~-----~~~~~-----~---------   58 (180)
                      ++..+....+++++||. ..=..+|+.++.... ..  ...+     .+|  +.+     ..+++     .         
T Consensus         9 ~s~~~~~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~~~~~gigsgv~~~~~~~~~fni~tlys~~~~er~~~~   88 (227)
T 3l82_B            9 HSLIIQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKERDRAR   88 (227)
T ss_dssp             SCCCCCCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCCEEEESSSSCEEEEEECSCC---------
T ss_pred             HHhccCCCceEEEecCCcccccHHHHHHHhcCCCcccccCCCCCCcCccccceEEEECCeeEEEEEEeccCcHHHhhhhh
Confidence            67788999999999984 334558888887655 11  1111     111  111     11221     0         


Q ss_pred             ------CeEEEEEEcC------CCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHH---HHHhcccc-cCCCeEEE
Q 030289           59 ------NVSFTVWDVG------GQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDEL---HRMLSEDE-LREAVLLV  122 (180)
Q Consensus        59 ------~~~~~i~D~~------G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~~-~~~~~iii  122 (180)
                            --++-....|      |+..++..|+.|+.++|++|||+|++|.+.++ ....+   ..++.... ..+.|++|
T Consensus        89 ~~~~~~~~k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLV  167 (227)
T 3l82_B           89 EEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLV  167 (227)
T ss_dssp             ----------------------------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEE
T ss_pred             hhhhhhhhhcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEE
Confidence                  0123344444      78899999999999999999999999876554 44443   33443322 36899999


Q ss_pred             EEecC-CCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHHhhhc
Q 030289          123 FANKQ-DLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       123 v~nK~-D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  179 (180)
                      ++||. |++......++.+.+++... .+.+.+..|||.+|+|+.+.++|+.+.+..+
T Consensus       168 lANKqqDlp~Ams~~EI~e~L~L~~l-~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k  224 (227)
T 3l82_B          168 LSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESK  224 (227)
T ss_dssp             EEEESSTTSCBCCHHHHHHHTTGGGG-CSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred             EeCCCcCccCCCCHHHHHHHcCCcCC-CCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence            99995 78888888999999998776 4789999999999999999999999988765

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.72  E-value=1.5e-17  Score=135.07  Aligned_cols=113  Identities=15%  Similarity=0.080  Sum_probs=86.6

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCC------------cc-------ccccccceeEEEEEEc---------------
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGE------------IV-------TTIPTIGFNVETVEYK---------------   58 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~------------~~-------~~~~t~~~~~~~~~~~---------------   58 (180)
                      +++..||+|+|+.++|||||+++|+...            ..       ....|+......+.+.               
T Consensus        16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~   95 (842)
T 1n0u_A           16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG   95 (842)
T ss_dssp             GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence            4567899999999999999999998641            11       1122444444444443               


Q ss_pred             -CeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCC
Q 030289           59 -NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP  130 (180)
Q Consensus        59 -~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~  130 (180)
                       +..+.+|||||+..|...+..+++.+|++++|+|+++..+.+....|....     ..++|+++|+||+|+.
T Consensus        96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-----~~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-----GERIKPVVVINKVDRA  163 (842)
T ss_dssp             SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-----HTTCEEEEEEECHHHH
T ss_pred             CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-----HcCCCeEEEEECCCcc
Confidence             688999999999999999999999999999999999877766655454322     2468999999999976

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.72  E-value=3.1e-18  Score=128.87  Aligned_cols=159  Identities=13%  Similarity=0.147  Sum_probs=75.5

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhhcCCcc-cc--------ccccceeEEEEEE----cCeEEEEEEcCCCCCCh----
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLKLGEIV-TT--------IPTIGFNVETVEY----KNVSFTVWDVGGQDKIR----   74 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~-~~--------~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~----   74 (180)
                      ...-.++|+++|++|||||||+|.|++.... ..        .+|.......+..    ....+++||++|.....    
T Consensus        27 l~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~  106 (418)
T 2qag_C           27 KRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN  106 (418)
T ss_dssp             C-CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC----------
T ss_pred             ecCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchh
Confidence            4455789999999999999999999976632 11        1233222211111    23478999999976531    


Q ss_pred             ---hh------------------HHhhccccCEEEEEEECCCh-hhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289           75 ---PL------------------WRHYFQNTHGLIFVVDSNDR-ERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPN  131 (180)
Q Consensus        75 ---~~------------------~~~~~~~~~~~i~v~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~  131 (180)
                         .+                  .+.++.++++.+++|..... .++.... .|+..+.     .++|+++|+||+|+.+
T Consensus       107 ~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~-----~~v~iIlVinK~Dll~  181 (418)
T 2qag_C          107 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-----EKVNIIPLIAKADTLT  181 (418)
T ss_dssp             -CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-----TTSEEEEEEESTTSSC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-----ccCcEEEEEEcccCcc
Confidence               11                  11233444443444443322 2343433 4555542     3689999999999876


Q ss_pred             CCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHHh
Q 030289          132 AMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV  176 (180)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  176 (180)
                      ......+... ....+...+++++++|++++.++++++..+.+.+
T Consensus       182 ~~ev~~~k~~-i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i  225 (418)
T 2qag_C          182 PEECQQFKKQ-IMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  225 (418)
T ss_dssp             HHHHHHHHHH-HHHHHHHHTCCCCCCC-----------------C
T ss_pred             HHHHHHHHHH-HHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence            4333222111 1122233467799999999999999888777654

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.71  E-value=2.3e-17  Score=121.98  Aligned_cols=150  Identities=17%  Similarity=0.134  Sum_probs=87.6

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcC------C--ccccccccc---------------------eeE------EEE-----
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLG------E--IVTTIPTIG---------------------FNV------ETV-----   55 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~------~--~~~~~~t~~---------------------~~~------~~~-----   55 (180)
                      ...|+|+|++|||||||+|+|.+.      +  .....|+..                     ...      ..+     
T Consensus        74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~tr  153 (349)
T 2www_A           74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTR  153 (349)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------CT
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccchH
Confidence            688999999999999999999851      1  111111100                     000      000     


Q ss_pred             ---------EEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEec
Q 030289           56 ---------EYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANK  126 (180)
Q Consensus        56 ---------~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK  126 (180)
                               ...+..+.++||+|....   .......+|++++|+|+.+.+..+....   .+      ...|.++|+||
T Consensus       154 ~~~~~~~~~~~~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlNK  221 (349)
T 2www_A          154 TTNEAILLCEGAGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVTK  221 (349)
T ss_dssp             THHHHHHHHHHTTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC---------------------CCSCSEEEECC
T ss_pred             HHHHHHHhhccCCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEee
Confidence                     124568899999995322   2344678999999999976543221111   11      23577999999


Q ss_pred             CCCCCCCC----HhHHHhHhCCCcc--CCcceEEEEeeccCCCChHHHHHHHHHHhh
Q 030289          127 QDLPNAMS----VSEVTDKLGLHSL--RQRRWYIQAACATSGQGLYEGLDWLSSNVS  177 (180)
Q Consensus       127 ~D~~~~~~----~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  177 (180)
                      +|+.+...    ..++...+.....  .....+++.+||++|.|+++++++|.+.+.
T Consensus       222 ~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          222 SDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             CSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence            99864211    1122222221111  111357899999999999999999988653

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.70  E-value=8.5e-18  Score=116.85  Aligned_cols=150  Identities=15%  Similarity=0.145  Sum_probs=92.1

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCcc-------cccccc----------ceeEEEEE------------------Ec
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEIV-------TTIPTI----------GFNVETVE------------------YK   58 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~-------~~~~t~----------~~~~~~~~------------------~~   58 (180)
                      .+..+|+++|.+|||||||+++|......       ...+..          +.....+.                  ..
T Consensus        28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (221)
T 2wsm_A           28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFS  107 (221)
T ss_dssp             HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGT
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcC
Confidence            45679999999999999999999854210       000100          11111111                  13


Q ss_pred             CeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC--CCHh
Q 030289           59 NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA--MSVS  136 (180)
Q Consensus        59 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~--~~~~  136 (180)
                      +..+.+|||+|+....   ..+....+.+++|+|+.+...  ....+...       .+.|.++|+||+|+.+.  ...+
T Consensus       108 ~~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~--~~~~~~~~-------~~~~~iiv~NK~Dl~~~~~~~~~  175 (221)
T 2wsm_A          108 DCDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDD--VVEKHPEI-------FRVADLIVINKVALAEAVGADVE  175 (221)
T ss_dssp             TCSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTT--HHHHCHHH-------HHTCSEEEEECGGGHHHHTCCHH
T ss_pred             CCCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcch--hhhhhhhh-------hhcCCEEEEecccCCcchhhHHH
Confidence            4578999999952111   111135788999999875432  11111111       24678999999998642  3444


Q ss_pred             HHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHHhhh
Q 030289          137 EVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  178 (180)
                      ++...+...   ...++++++||++|.|++++++++.+.+.+
T Consensus       176 ~~~~~~~~~---~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~  214 (221)
T 2wsm_A          176 KMKADAKLI---NPRAKIIEMDLKTGKGFEEWIDFLRGILNV  214 (221)
T ss_dssp             HHHHHHHHH---CTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHh---CCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence            443332111   124689999999999999999999987754

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.68  E-value=1.4e-15  Score=112.17  Aligned_cols=80  Identities=21%  Similarity=0.236  Sum_probs=58.5

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC-ccccc--cccceeEEEEEEcC-----------------eEEEEEEcCCCCCChh
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE-IVTTI--PTIGFNVETVEYKN-----------------VSFTVWDVGGQDKIRP   75 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~-~~~~~--~t~~~~~~~~~~~~-----------------~~~~i~D~~G~~~~~~   75 (180)
                      .++|+++|.+|||||||+|+|++.. .....  .|++.....+.+.+                 ..+.+|||||..++..
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~   81 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence            3689999999999999999999876 22222  25565555555533                 6899999999887532


Q ss_pred             ----h---HHhhccccCEEEEEEECCC
Q 030289           76 ----L---WRHYFQNTHGLIFVVDSND   95 (180)
Q Consensus        76 ----~---~~~~~~~~~~~i~v~d~~~   95 (180)
                          +   ...+++++|++++|+|+++
T Consensus        82 ~~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           82 KGEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence                2   3345789999999999975

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.67  E-value=5.7e-17  Score=115.50  Aligned_cols=118  Identities=11%  Similarity=-0.016  Sum_probs=68.4

Q ss_pred             eEEEEEEcCCCCCChhhH------HhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC
Q 030289           60 VSFTVWDVGGQDKIRPLW------RHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM  133 (180)
Q Consensus        60 ~~~~i~D~~G~~~~~~~~------~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~  133 (180)
                      +++.+|||||........      ...+.. +++++++|+.......................+.|+++|+||+|+.+..
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~  187 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE  187 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence            589999999976543221      124455 8888899875432222221111111111112367899999999987643


Q ss_pred             CHhHHHhHhCC------C-----------------ccC--CcceEEEEeeccCCCChHHHHHHHHHHhhh
Q 030289          134 SVSEVTDKLGL------H-----------------SLR--QRRWYIQAACATSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       134 ~~~~~~~~~~~------~-----------------~~~--~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  178 (180)
                      ..+++...+..      .                 .+.  ....+++++||+++.|++++++++.+.+..
T Consensus       188 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~  257 (262)
T 1yrb_A          188 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT  257 (262)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence            22211111100      0                 000  112368999999999999999999987754

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.67  E-value=1.6e-16  Score=117.28  Aligned_cols=108  Identities=14%  Similarity=0.083  Sum_probs=66.9

Q ss_pred             cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHh-
Q 030289           58 KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVS-  136 (180)
Q Consensus        58 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~-  136 (180)
                      .+.++.+|||||......   .....+|++++|+|+...+.++.+..         ...+.|.++|+||+|+.+..... 
T Consensus       147 ~~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---------~~~~~p~ivv~NK~Dl~~~~~~~~  214 (341)
T 2p67_A          147 AGYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---------GLMEVADLIVINKDDGDNHTNVAI  214 (341)
T ss_dssp             TTCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---------HHHHHCSEEEECCCCTTCHHHHHH
T ss_pred             cCCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---------hhhcccCEEEEECCCCCChHHHHH
Confidence            367899999999764432   24588999999999875433211110         01135789999999997632222 


Q ss_pred             ---HHHhHhCCCcc--CCcceEEEEeeccCCCChHHHHHHHHHHhh
Q 030289          137 ---EVTDKLGLHSL--RQRRWYIQAACATSGQGLYEGLDWLSSNVS  177 (180)
Q Consensus       137 ---~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  177 (180)
                         ++...+.....  .....+++++||++|.|++++++++.+.+.
T Consensus       215 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          215 ARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence               22221111000  111347899999999999999999988654

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.65  E-value=4.6e-16  Score=110.21  Aligned_cols=111  Identities=23%  Similarity=0.367  Sum_probs=88.7

Q ss_pred             cCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHH---HHhcccc-cCCCeEEEEEec-CCCCCCCCHhHHHhH
Q 030289           67 VGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELH---RMLSEDE-LREAVLLVFANK-QDLPNAMSVSEVTDK  141 (180)
Q Consensus        67 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~---~~~~~~~-~~~~~iiiv~nK-~D~~~~~~~~~~~~~  141 (180)
                      .+||..++..|+.|+.++|++|||+|++|.+.++ ....+.   .++.... ..+.|++|++|| .|++......++.+.
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~  272 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE  272 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence            4578999999999999999999999999987654 333222   3333322 368999999997 589888888999999


Q ss_pred             hCCCccCCcceEEEEeeccCCCChHHHHHHHHHHhhhc
Q 030289          142 LGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       142 ~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  179 (180)
                      +++... .+.+.+..|||.+|+|+.|.++|+.+.+..+
T Consensus       273 L~L~~l-~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k  309 (312)
T 3l2o_B          273 LHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESK  309 (312)
T ss_dssp             TTGGGG-CSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred             cCCccC-CCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence            988776 4789999999999999999999999988665

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.64  E-value=2.2e-15  Score=120.19  Aligned_cols=156  Identities=17%  Similarity=0.133  Sum_probs=96.5

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCc-c-ccccccc------------------------------------------
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEI-V-TTIPTIG------------------------------------------   49 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~-~-~~~~t~~------------------------------------------   49 (180)
                      ....+|+|+|.+++|||||+|+|++..+ + ...+++.                                          
T Consensus        49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~  128 (772)
T 3zvr_A           49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  128 (772)
T ss_dssp             GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence            5678999999999999999999998663 1 1111110                                          


Q ss_pred             ------ee----EEEEEE-cCeEEEEEEcCCCCC-------------ChhhHHhhc-cccCEEEEEEECCChhhHHHHHH
Q 030289           50 ------FN----VETVEY-KNVSFTVWDVGGQDK-------------IRPLWRHYF-QNTHGLIFVVDSNDRERIGEAKD  104 (180)
Q Consensus        50 ------~~----~~~~~~-~~~~~~i~D~~G~~~-------------~~~~~~~~~-~~~~~~i~v~d~~~~~~~~~~~~  104 (180)
                            +.    ...+.. ....+.++||||-..             .......++ ..+|++++|+|+++....+....
T Consensus       129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~  208 (772)
T 3zvr_A          129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  208 (772)
T ss_dssp             HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred             cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence                  00    011111 234688999999543             122344444 46899999999976422222222


Q ss_pred             HHHHHhcccccCCCeEEEEEecCCCCCCCC-HhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHH
Q 030289          105 ELHRMLSEDELREAVLLVFANKQDLPNAMS-VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSS  174 (180)
Q Consensus       105 ~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  174 (180)
                      .+..+ .   ..+.|+++|+||+|+.+... ...+... ..........+++.+||++|.|++++++.+.+
T Consensus       209 ll~~L-~---~~g~pvIlVlNKiDlv~~~~~~~~il~~-~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~  274 (772)
T 3zvr_A          209 IAKEV-D---PQGQRTIGVITKLDLMDEGTDARDVLEN-KLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  274 (772)
T ss_dssp             HHHHH-C---TTCSSEEEEEECTTSSCTTCCSHHHHTT-CSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred             HHHHH-H---hcCCCEEEEEeCcccCCcchhhHHHHHH-HhhhhhccCCceEEecccccccchhHHHHHHH
Confidence            33333 2   24689999999999976433 2222211 11111112347899999999999999999886

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.63  E-value=2.5e-16  Score=124.66  Aligned_cols=157  Identities=17%  Similarity=0.180  Sum_probs=109.2

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC--c------------ccc-------ccccceeEEEEEEcCeEEEEEEcCCCCCCh
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE--I------------VTT-------IPTIGFNVETVEYKNVSFTVWDVGGQDKIR   74 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~--~------------~~~-------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~   74 (180)
                      .-||+|+|+.++|||||..+|+...  .            ..+       ..|+......+.+++..+.++|||||..|.
T Consensus         2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~   81 (638)
T 3j25_A            2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL   81 (638)
T ss_dssp             CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence            4589999999999999999996311  1            011       124445555667788999999999999999


Q ss_pred             hhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC---HhHHHhHhCCCc-----
Q 030289           75 PLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS---VSEVTDKLGLHS-----  146 (180)
Q Consensus        75 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~---~~~~~~~~~~~~-----  146 (180)
                      .-....++-+|++++|+|+...-.-+. ...+.....    .++|.++++||+|.....-   .+++.+.++...     
T Consensus        82 ~Ev~raL~~~DgavlVVDa~~GV~~qT-~~v~~~a~~----~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~  156 (638)
T 3j25_A           82 AEVYRSLSVLDGAILLISAKDGVQAQT-RILFHALRK----MGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQK  156 (638)
T ss_dssp             HHHHHHHTTCSEEECCEESSCTTCSHH-HHHHHHHHH----HTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCC
T ss_pred             HHHHHHHHHhCEEEEEEeCCCCCcHHH-HHHHHHHHH----cCCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccce
Confidence            999999999999999999975422222 233333322    3678899999999765321   222322222110     


Q ss_pred             ---------------------------------------------------cCCcceEEEEeeccCCCChHHHHHHHHHH
Q 030289          147 ---------------------------------------------------LRQRRWYIQAACATSGQGLYEGLDWLSSN  175 (180)
Q Consensus       147 ---------------------------------------------------~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  175 (180)
                                                                         ....-.|++..||+++.||+.+++.+.+.
T Consensus       157 ~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~  236 (638)
T 3j25_A          157 VELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNK  236 (638)
T ss_dssp             CCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHS
T ss_pred             eEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhcc
Confidence                                                               00112478899999999999999999876


Q ss_pred             hh
Q 030289          176 VS  177 (180)
Q Consensus       176 ~~  177 (180)
                      +.
T Consensus       237 ~p  238 (638)
T 3j25_A          237 FY  238 (638)
T ss_dssp             CC
T ss_pred             cc
Confidence            54

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.60  E-value=6.2e-15  Score=109.38  Aligned_cols=111  Identities=19%  Similarity=0.173  Sum_probs=80.5

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCC-cccc--ccccceeEEEEEEcCeEEEEEEcCCCCCC-------hhhHHhhccccCE
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGE-IVTT--IPTIGFNVETVEYKNVSFTVWDVGGQDKI-------RPLWRHYFQNTHG   86 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~-~~~~--~~t~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~~~~   86 (180)
                      .+|+++|.|+||||||+|+|++.. ....  ..|.+.....+.+.+.++.++||||-...       .......++.+|+
T Consensus        73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~  152 (376)
T 4a9a_A           73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNL  152 (376)
T ss_dssp             EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSE
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCc
Confidence            479999999999999999999876 2222  34788888999999999999999994322       1123345678999


Q ss_pred             EEEEEECCChh-hHHHHHHHHHHHhcccccCCCeEEEEEecCCC
Q 030289           87 LIFVVDSNDRE-RIGEAKDELHRMLSEDELREAVLLVFANKQDL  129 (180)
Q Consensus        87 ~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~  129 (180)
                      +++|+|++++. ..+.+...+..+-.  ...+.|.++++||.|.
T Consensus       153 il~vvD~~~p~~~~~~i~~EL~~~~~--~l~~k~~~i~~nK~d~  194 (376)
T 4a9a_A          153 LFIILDVNKPLHHKQIIEKELEGVGI--RLNKTPPDILIKKKEK  194 (376)
T ss_dssp             EEEEEETTSHHHHHHHHHHHHHHTTE--EETCCCCCEEEEECSS
T ss_pred             cccccccCccHHHHHHHHHHHHHhhH--hhccCChhhhhhHhhh
Confidence            99999998763 22333333333211  2346778899999995

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.59  E-value=1.9e-14  Score=106.77  Aligned_cols=79  Identities=20%  Similarity=0.254  Sum_probs=55.8

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCC-cccc--ccccceeEEEEEE---------------------cCeEEEEEEcCCCCC
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGE-IVTT--IPTIGFNVETVEY---------------------KNVSFTVWDVGGQDK   72 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~-~~~~--~~t~~~~~~~~~~---------------------~~~~~~i~D~~G~~~   72 (180)
                      ++|+++|++|||||||+|+|++.. ....  ..|+..+...+..                     .+..+.+|||||..+
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            689999999999999999998653 1111  1244444433332                     246799999999765


Q ss_pred             Ch-------hhHHhhccccCEEEEEEECCC
Q 030289           73 IR-------PLWRHYFQNTHGLIFVVDSND   95 (180)
Q Consensus        73 ~~-------~~~~~~~~~~~~~i~v~d~~~   95 (180)
                      ..       ......++++|++++|+|+.+
T Consensus        82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            42       223446789999999999975

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.58  E-value=5.6e-14  Score=112.64  Aligned_cols=113  Identities=18%  Similarity=0.089  Sum_probs=79.2

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC--------------ccc-------cccccceeEEEEEEc-------CeEEEEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE--------------IVT-------TIPTIGFNVETVEYK-------NVSFTVW   65 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~--------------~~~-------~~~t~~~~~~~~~~~-------~~~~~i~   65 (180)
                      ++.-||+|+|+.++|||||..+|+...              ...       ...|+.....++.+.       ++.+.++
T Consensus        11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI   90 (709)
T 4fn5_A           11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI   90 (709)
T ss_dssp             GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred             HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence            456689999999999999999996321              000       111333334444442       5889999


Q ss_pred             EcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289           66 DVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN  131 (180)
Q Consensus        66 D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~  131 (180)
                      |||||..|..-....++-+|++++|+|+...-..+ ....+.....    .++|.++++||+|...
T Consensus        91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~q-T~~v~~~a~~----~~lp~i~~iNKiDr~~  151 (709)
T 4fn5_A           91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQ-SETVWRQANK----YGVPRIVYVNKMDRQG  151 (709)
T ss_dssp             CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH----HTCCEEEEEECSSSTT
T ss_pred             eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchh-HHHHHHHHHH----cCCCeEEEEccccccC
Confidence            99999999999999999999999999997543222 2233333322    4789999999999764

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.56  E-value=1.2e-16  Score=111.36  Aligned_cols=151  Identities=15%  Similarity=0.147  Sum_probs=83.4

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCcc-ccccccceeE----------------EEEEEc------------------
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV----------------ETVEYK------------------   58 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~~----------------~~~~~~------------------   58 (180)
                      .+.++|+++|.+|||||||+++|+..... .+.++++..+                ..+...                  
T Consensus        36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~  115 (226)
T 2hf9_A           36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN  115 (226)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence            45789999999999999999999865322 2223333221                111100                  


Q ss_pred             --CeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC--CC
Q 030289           59 --NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA--MS  134 (180)
Q Consensus        59 --~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~--~~  134 (180)
                        +..+.++|++|.-...   ..+-...+..+.++|........  .... ..      ...|.++|+||+|+.+.  ..
T Consensus       116 ~~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~--~~~~-~~------~~~~~iiv~NK~Dl~~~~~~~  183 (226)
T 2hf9_A          116 LDEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTI--EKHP-GI------MKTADLIVINKIDLADAVGAD  183 (226)
T ss_dssp             GGGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTT--TTCH-HH------HTTCSEEEEECGGGHHHHTCC
T ss_pred             cCCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhH--hhhh-hH------hhcCCEEEEeccccCchhHHH
Confidence              1145555555521110   01111233445555542111000  0000 00      13567999999998653  23


Q ss_pred             HhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHHhhhc
Q 030289          135 VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  179 (180)
                      .++.......   ...+.+++++||++|.|++++|+++.+.+.+.
T Consensus       184 ~~~~~~~~~~---~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~  225 (226)
T 2hf9_A          184 IKKMENDAKR---INPDAEVVLLSLKTMEGFDKVLEFIEKSVKEV  225 (226)
T ss_dssp             HHHHHHHHHH---HCTTSEEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHH---hCCCCeEEEEEecCCCCHHHHHHHHHHHHHhh
Confidence            4433322211   01245899999999999999999999887653

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.55  E-value=3.3e-14  Score=104.66  Aligned_cols=152  Identities=15%  Similarity=0.158  Sum_probs=88.8

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhc------CC--ccccccc--------------cc-----eeEEE------------
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKL------GE--IVTTIPT--------------IG-----FNVET------------   54 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~------~~--~~~~~~t--------------~~-----~~~~~------------   54 (180)
                      .+...++++|++|||||||++.+.+      ++  .....++              ++     .....            
T Consensus        53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~  132 (337)
T 2qm8_A           53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV  132 (337)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccch
Confidence            4567899999999999999999973      32  1110110              00     00000            


Q ss_pred             ----------EEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEE
Q 030289           55 ----------VEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFA  124 (180)
Q Consensus        55 ----------~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~  124 (180)
                                +...+.++.++||||...-..   .....+|.+++++|+...+..+.+...+.         ..+.++++
T Consensus       133 tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~i~---------~~~~ivvl  200 (337)
T 2qm8_A          133 AAKTRETMLLCEAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKGIF---------ELADMIAV  200 (337)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTTHH---------HHCSEEEE
T ss_pred             HHHHHHHHHHHhcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHHHh---------ccccEEEE
Confidence                      112477899999999654332   23468999999999864432221111111         23457777


Q ss_pred             ecCCCCCCCC-----HhHHHhHhCCCccC--CcceEEEEeeccCCCChHHHHHHHHHHhh
Q 030289          125 NKQDLPNAMS-----VSEVTDKLGLHSLR--QRRWYIQAACATSGQGLYEGLDWLSSNVS  177 (180)
Q Consensus       125 nK~D~~~~~~-----~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  177 (180)
                      ||+|+.....     ..++..........  ....+++.+|++++.|++++++.+.+...
T Consensus       201 NK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          201 NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             EchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            9999754221     12222222221100  11246888999999999999999987654

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.43  E-value=3.4e-13  Score=100.52  Aligned_cols=83  Identities=20%  Similarity=0.236  Sum_probs=53.7

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCc-ccc--ccccceeEEEEEEc-----------------CeEEEEEEcCCCCCC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEI-VTT--IPTIGFNVETVEYK-----------------NVSFTVWDVGGQDKI   73 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~--~~t~~~~~~~~~~~-----------------~~~~~i~D~~G~~~~   73 (180)
                      ...++|+++|++|||||||+|+|++... ...  ..|.++....+.+.                 +..+.+|||||....
T Consensus        20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~   99 (396)
T 2ohf_A           20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG   99 (396)
T ss_dssp             SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence            4578999999999999999999998752 222  23556666665542                 346999999997764


Q ss_pred             hh-------hHHhhccccCEEEEEEECCCh
Q 030289           74 RP-------LWRHYFQNTHGLIFVVDSNDR   96 (180)
Q Consensus        74 ~~-------~~~~~~~~~~~~i~v~d~~~~   96 (180)
                      ..       .+..+++++|++++|+|+.+.
T Consensus       100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~  129 (396)
T 2ohf_A          100 AHNGQGLGNAFLSHISACDGIFHLTRAFED  129 (396)
T ss_dssp             -------CCHHHHHHHTSSSEEEEEEC---
T ss_pred             cchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence            33       456778999999999998753

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.32  E-value=2e-12  Score=93.84  Aligned_cols=96  Identities=20%  Similarity=0.174  Sum_probs=73.6

Q ss_pred             CCCChhhHHhhccccCEEEEEEECCChh-hHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC---HhHHHhHhCCC
Q 030289           70 QDKIRPLWRHYFQNTHGLIFVVDSNDRE-RIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS---VSEVTDKLGLH  145 (180)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~---~~~~~~~~~~~  145 (180)
                      ++++..+.+.++.++|++++|+|++++. ++..+..|+..+..    .++|+++|+||+|+.++..   .+++.+.    
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~----  137 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISI----  137 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHH----
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHH----
Confidence            7778888888999999999999999886 88888888875532    5789999999999976431   1222211    


Q ss_pred             ccCCcceEEEEeeccCCCChHHHHHHHHH
Q 030289          146 SLRQRRWYIQAACATSGQGLYEGLDWLSS  174 (180)
Q Consensus       146 ~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  174 (180)
                       ....+.+++++||++|.|+++++..+..
T Consensus       138 -~~~~g~~~~~~SA~~g~gi~~L~~~l~G  165 (302)
T 2yv5_A          138 -YRDAGYDVLKVSAKTGEGIDELVDYLEG  165 (302)
T ss_dssp             -HHHTTCEEEECCTTTCTTHHHHHHHTTT
T ss_pred             -HHHCCCeEEEEECCCCCCHHHHHhhccC
Confidence             1223568999999999999999987654

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.18  E-value=1.4e-10  Score=86.63  Aligned_cols=82  Identities=21%  Similarity=0.323  Sum_probs=60.7

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCc--ccccc--ccceeEEEEEEcC-----------------eEEEEEEcCCCCC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKN-----------------VSFTVWDVGGQDK   72 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~--~~~~~--t~~~~~~~~~~~~-----------------~~~~i~D~~G~~~   72 (180)
                      ....+++++|++|||||||+|+|++...  ....|  |+.+....+.+.+                 ..+.+||+||...
T Consensus        18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~   97 (392)
T 1ni3_A           18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   97 (392)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence            4468999999999999999999998652  22333  5566666666643                 5789999999332


Q ss_pred             -------ChhhHHhhccccCEEEEEEECCC
Q 030289           73 -------IRPLWRHYFQNTHGLIFVVDSND   95 (180)
Q Consensus        73 -------~~~~~~~~~~~~~~~i~v~d~~~   95 (180)
                             +.......++.+|++++|+|+.+
T Consensus        98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                   33345566789999999999853

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.16  E-value=7.9e-11  Score=88.60  Aligned_cols=136  Identities=18%  Similarity=0.224  Sum_probs=69.5

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCCccc-----cccccceeEEEEEEc--C--eEEEEEEcCCCCCC--------------
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGEIVT-----TIPTIGFNVETVEYK--N--VSFTVWDVGGQDKI--------------   73 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~~~~-----~~~t~~~~~~~~~~~--~--~~~~i~D~~G~~~~--------------   73 (180)
                      ++++|+|++|+|||||+|.|++.....     ..+........+...  .  ..+.++|++|-...              
T Consensus        43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i  122 (427)
T 2qag_B           43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI  122 (427)
T ss_dssp             EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence            569999999999999999998764111     011111111111111  1  36899999985432              


Q ss_pred             hhhHHhhc-------------cc--cCE-EEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhH
Q 030289           74 RPLWRHYF-------------QN--THG-LIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSE  137 (180)
Q Consensus        74 ~~~~~~~~-------------~~--~~~-~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~  137 (180)
                      ...+..++             .+  .|+ ++++.|...  .+......+...+.    .+.|+++|.||+|..++.....
T Consensus       123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~--~l~~~Dieilk~L~----~~~~vI~Vi~KtD~Lt~~E~~~  196 (427)
T 2qag_B          123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGH--SLKSLDLVTMKKLD----SKVNIIPIIAKADAISKSELTK  196 (427)
T ss_dssp             HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-----CHHHHHHHHHTC----SCSEEEEEESCGGGSCHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCC--CCCHHHHHHHHHHh----hCCCEEEEEcchhccchHHHHH
Confidence            11111111             11  234 444555542  22233322333322    4789999999999887544444


Q ss_pred             HHhHhCCCccCCcceEEEEeec
Q 030289          138 VTDKLGLHSLRQRRWYIQAACA  159 (180)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~Sa  159 (180)
                      +...+.. .+...+++++.+|.
T Consensus       197 l~~~I~~-~L~~~gi~I~~is~  217 (427)
T 2qag_B          197 FKIKITS-ELVSNGVQIYQFPT  217 (427)
T ss_dssp             HHHHHHH-HHBTTBCCCCCCC-
T ss_pred             HHHHHHH-HHHHcCCcEEecCC
Confidence            3333221 12334566666664

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=99.15  E-value=1e-09  Score=84.50  Aligned_cols=154  Identities=16%  Similarity=0.124  Sum_probs=87.6

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhh------cCC--cccc---ccc-----------cceeEEEE----------------
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLK------LGE--IVTT---IPT-----------IGFNVETV----------------   55 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~------~~~--~~~~---~~t-----------~~~~~~~~----------------   55 (180)
                      .+...|+|+|++||||||++++|.      +.+  ....   .+.           .++.....                
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            345689999999999999999998      333  1111   110           01111110                


Q ss_pred             -EEcCeEEEEEEcCCCCCChh-hHHh---h--ccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeE-EEEEecC
Q 030289           56 -EYKNVSFTVWDVGGQDKIRP-LWRH---Y--FQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVL-LVFANKQ  127 (180)
Q Consensus        56 -~~~~~~~~i~D~~G~~~~~~-~~~~---~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i-iiv~nK~  127 (180)
                       ...++++.|+||||...... ....   .  ...+|.+++|+|+.........   ...+..     ..|+ .+|+||.
T Consensus       179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~---a~~~~~-----~~~i~gvVlNK~  250 (504)
T 2j37_W          179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ---AKAFKD-----KVDVASVIVTKL  250 (504)
T ss_dssp             HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH---HHHHHH-----HHCCCCEEEECT
T ss_pred             HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH---HHHHHh-----hcCceEEEEeCC
Confidence             11567899999999764321 1111   1  2278999999999764321111   122211     1454 8899999


Q ss_pred             CCCCCCC-HhHHHhHhCCCc--------cCCc--ceEEEEeeccCCCC-hHHHHHHHHHH
Q 030289          128 DLPNAMS-VSEVTDKLGLHS--------LRQR--RWYIQAACATSGQG-LYEGLDWLSSN  175 (180)
Q Consensus       128 D~~~~~~-~~~~~~~~~~~~--------~~~~--~~~~~~~Sa~~~~~-i~~~~~~l~~~  175 (180)
                      |...... .-.+....+.+.        ....  ..+.+.+|+..|.| ++++++++.+.
T Consensus       251 D~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          251 DGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             TSCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             ccccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            9875433 112333433321        0000  01235689999999 99999998765

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.11  E-value=1.9e-11  Score=90.99  Aligned_cols=112  Identities=11%  Similarity=0.151  Sum_probs=67.4

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcC-----C--ccccccccceeEEEEEEcCeEEEEEEcCCCCCCh--------hhHHh
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLG-----E--IVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIR--------PLWRH   79 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~-----~--~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~   79 (180)
                      ...+|+++|.+|+|||||+|+|++.     .  .....|.+......+... ..+.++||||-....        .....
T Consensus       161 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l~~  239 (369)
T 3ec1_A          161 EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE-SGATLYDTPGIINHHQMAHFVDARDLKI  239 (369)
T ss_dssp             TTSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECS-TTCEEEECCSCCCCSSGGGGSCTTTHHH
T ss_pred             ccCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeC-CCeEEEeCCCcCcHHHHHHHHhHHHHHH
Confidence            3568999999999999999999975     2  222233222223333332 248999999943221        11222


Q ss_pred             hc--cccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC
Q 030289           80 YF--QNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA  132 (180)
Q Consensus        80 ~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~  132 (180)
                      ++  +..+.++++++....--+..+..     +......+.|+++++||.|....
T Consensus       240 ~~~~~~i~~~~~~l~~~~~~~~g~l~~-----l~~l~~~~~~~~~v~~k~d~~~~  289 (369)
T 3ec1_A          240 ITPKREIHPRVYQLNEGQTLFFGGLAR-----LDYIKGGRRSFVCYMANELTVHR  289 (369)
T ss_dssp             HSCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEE
T ss_pred             HhcccccCceEEEEcCCceEEECCEEE-----EEEccCCCceEEEEecCCccccc
Confidence            32  56799999998842210011111     11122356899999999998653

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.03  E-value=1.1e-10  Score=86.79  Aligned_cols=100  Identities=19%  Similarity=0.105  Sum_probs=66.8

Q ss_pred             CCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC-HhHHHhHhCCCcc
Q 030289           69 GQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS-VSEVTDKLGLHSL  147 (180)
Q Consensus        69 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~-~~~~~~~~~~~~~  147 (180)
                      .++.|+..++.+.+.++++++|+|+.++.     ..|...+...  ..+.|+++|+||+|+.+... .+...+.+. ...
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~--~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~-~~~  126 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRF--VGNNKVLLVGNKADLIPKSVKHDKVKHWMR-YSA  126 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHH--SSSSCEEEEEECGGGSCTTSCHHHHHHHHH-HHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHH--hCCCcEEEEEEChhcCCcccCHHHHHHHHH-HHH
Confidence            35678888999999999999999998753     2232222221  23789999999999976432 222211100 011


Q ss_pred             CCcce---EEEEeeccCCCChHHHHHHHHHHh
Q 030289          148 RQRRW---YIQAACATSGQGLYEGLDWLSSNV  176 (180)
Q Consensus       148 ~~~~~---~~~~~Sa~~~~~i~~~~~~l~~~~  176 (180)
                      +..+.   .++++||++|.|++++++.+.+..
T Consensus       127 ~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~  158 (368)
T 3h2y_A          127 KQLGLKPEDVFLISAAKGQGIAELADAIEYYR  158 (368)
T ss_dssp             HHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence            12233   789999999999999999997654

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.03  E-value=8.5e-11  Score=87.48  Aligned_cols=114  Identities=8%  Similarity=0.107  Sum_probs=65.3

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCC------c--cccccccceeEEEEEEcCeEEEEEEcCCCCCCh--------hhHH
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGE------I--VTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIR--------PLWR   78 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~------~--~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~   78 (180)
                      ...+|+++|.+|+|||||+|+|++..      .  ....|.+......+... ..+.++||||-....        ....
T Consensus       159 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l~  237 (368)
T 3h2y_A          159 GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLD-EESSLYDTPGIINHHQMAHYVGKQSLK  237 (368)
T ss_dssp             TTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESS-SSCEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred             ccceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEec-CCeEEEeCCCcCcHHHHHHHhhHHHHH
Confidence            45789999999999999999998752      1  11222111222223322 238999999943221        1122


Q ss_pred             hh--ccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC
Q 030289           79 HY--FQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS  134 (180)
Q Consensus        79 ~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~  134 (180)
                      .+  .+..+.++++++....--+..+..     +......+.|+++++||+|......
T Consensus       238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~-----~d~l~~~~~~~~~v~nk~d~~~~~~  290 (368)
T 3h2y_A          238 LITPTKEIKPMVFQLNEEQTLFFSGLAR-----FDYVSGGRRAFTCHFSNRLTIHRTK  290 (368)
T ss_dssp             HHSCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEEEE
T ss_pred             HhccccccCceEEEEcCCCEEEEcceEE-----EEEecCCCceEEEEecCcccccccc
Confidence            22  245788899998742110011100     1112234689999999999876433

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.01  E-value=2.4e-10  Score=81.58  Aligned_cols=113  Identities=15%  Similarity=0.275  Sum_probs=61.0

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCCccccc----------cccceeEEEEEE----cCeEEEEEEcCCCCCC-------h
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGEIVTTI----------PTIGFNVETVEY----KNVSFTVWDVGGQDKI-------R   74 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~~~~~~----------~t~~~~~~~~~~----~~~~~~i~D~~G~~~~-------~   74 (180)
                      .|+++++|++|+|||||+|.|++.......          .+.......+..    -...++++|++|-...       .
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            479999999999999999999863311110          111111111111    1237899999983211       0


Q ss_pred             hh-------HHhh--------------ccccCEEEEEEECCChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCC
Q 030289           75 PL-------WRHY--------------FQNTHGLIFVVDSNDRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNA  132 (180)
Q Consensus        75 ~~-------~~~~--------------~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~  132 (180)
                      ..       ....              +.++++.++++|... ..+.... ..+..+ ..    ..++++|.+|+|..+.
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~-~gL~~lD~~~l~~L-~~----~~~vI~Vi~K~D~lt~  155 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTG-HSLRPLDLEFMKHL-SK----VVNIIPVIAKADTMTL  155 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCS-SSCCHHHHHHHHHH-HT----TSEEEEEETTGGGSCH
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCC-CcCCHHHHHHHHHH-Hh----cCcEEEEEeccccCCH
Confidence            11       0011              113588889998542 1112222 223333 22    2789999999998774


Q ss_pred             CC
Q 030289          133 MS  134 (180)
Q Consensus       133 ~~  134 (180)
                      .+
T Consensus       156 ~e  157 (270)
T 3sop_A          156 EE  157 (270)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.95  E-value=3e-10  Score=84.56  Aligned_cols=101  Identities=14%  Similarity=0.127  Sum_probs=67.1

Q ss_pred             CCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC-HhHHHhHhCCCcc
Q 030289           69 GQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS-VSEVTDKLGLHSL  147 (180)
Q Consensus        69 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~-~~~~~~~~~~~~~  147 (180)
                      .++.|++..+.++++++++++|+|+.++.+  .....+..+     ..+.|+++|+||+|+.+... .+.+.+.+. ..+
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~--s~~~~l~~~-----l~~~piilV~NK~DLl~~~~~~~~~~~~l~-~~~  128 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG--SFIPGLPRF-----AADNPILLVGNKADLLPRSVKYPKLLRWMR-RMA  128 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG--GCCSSHHHH-----CTTSCEEEEEECGGGSCTTCCHHHHHHHHH-HHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC--chhhHHHHH-----hCCCCEEEEEEChhcCCCccCHHHHHHHHH-HHH
Confidence            477888999999999999999999998653  111112222     13689999999999976432 222221110 011


Q ss_pred             CCcce---EEEEeeccCCCChHHHHHHHHHHhh
Q 030289          148 RQRRW---YIQAACATSGQGLYEGLDWLSSNVS  177 (180)
Q Consensus       148 ~~~~~---~~~~~Sa~~~~~i~~~~~~l~~~~~  177 (180)
                      +..+.   .++.+||++|.|++++++.+.+...
T Consensus       129 ~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~  161 (369)
T 3ec1_A          129 EELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE  161 (369)
T ss_dssp             HTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred             HHcCCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence            12222   6899999999999999999976543

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.90  E-value=7.1e-09  Score=78.00  Aligned_cols=158  Identities=13%  Similarity=0.152  Sum_probs=83.2

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCccccc-cccc-e----eEEEEEEcC-eEEEEEEcCCCCCC----hhh-HHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG-F----NVETVEYKN-VSFTVWDVGGQDKI----RPL-WRHYF   81 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~-~t~~-~----~~~~~~~~~-~~~~i~D~~G~~~~----~~~-~~~~~   81 (180)
                      .....++|+|++|||||||+|.+.+-...... .+.+ .    ....++... ..+.+||++|-...    ... ....+
T Consensus        67 ~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L  146 (413)
T 1tq4_A           67 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKF  146 (413)
T ss_dssp             HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCC
Confidence            34568999999999999999999874311111 1110 0    011111121 25899999984321    111 11122


Q ss_pred             cccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCC---------CCCCHhHHHhHhCCCc---cCC
Q 030289           82 QNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP---------NAMSVSEVTDKLGLHS---LRQ  149 (180)
Q Consensus        82 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~---------~~~~~~~~~~~~~~~~---~~~  149 (180)
                      ...+..++ ++.....   ..+..+...+..   .+.|+++|.||.|+.         +.....++.+.+....   ...
T Consensus       147 ~~~~~~~~-lS~G~~~---kqrv~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~  219 (413)
T 1tq4_A          147 YEYDFFII-ISATRFK---KNDIDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE  219 (413)
T ss_dssp             GGCSEEEE-EESSCCC---HHHHHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CccCCeEE-eCCCCcc---HHHHHHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence            33455554 6654211   111111112111   367999999999853         1222222222211110   000


Q ss_pred             ---cceEEEEeec--cCCCChHHHHHHHHHHhhh
Q 030289          150 ---RRWYIQAACA--TSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       150 ---~~~~~~~~Sa--~~~~~i~~~~~~l~~~~~~  178 (180)
                         ....++.+|+  .++.|++++.+.+.+.+.+
T Consensus       220 ~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe  253 (413)
T 1tq4_A          220 NGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI  253 (413)
T ss_dssp             TTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred             cCCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence               1125788999  5666799999999887754

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.87  E-value=9.5e-10  Score=78.15  Aligned_cols=55  Identities=25%  Similarity=0.296  Sum_probs=35.2

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCCccccccccceeE--EEEEEcCeEEEEEEcCCCCC
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEYKNVSFTVWDVGGQDK   72 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~D~~G~~~   72 (180)
                      ++++++|.+|+|||||+|+|.+.......++.+...  ..+. .+..+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~-~~~~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFS-LENGVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEE-CTTSCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEE-eCCCEEEEECCCccc
Confidence            799999999999999999999776433333333211  1222 234789999999553

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.85  E-value=3.2e-09  Score=76.21  Aligned_cols=100  Identities=15%  Similarity=0.078  Sum_probs=67.2

Q ss_pred             EEEcCCCC-CChhhHHhhccccCEEEEEEECCChhhHH--HHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHh
Q 030289           64 VWDVGGQD-KIRPLWRHYFQNTHGLIFVVDSNDRERIG--EAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTD  140 (180)
Q Consensus        64 i~D~~G~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~  140 (180)
                      +-..||+. +........+.++|+++.|+|+.++.+..  .+.++    +     .+.|.++|+||+|+.+....+.+.+
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~----l-----~~kp~ilVlNK~DL~~~~~~~~~~~   73 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDI----L-----KNKPRIMLLNKADKADAAVTQQWKE   73 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHH----C-----SSSCEEEEEECGGGSCHHHHHHHHH
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHH----H-----CCCCEEEEEECcccCCHHHHHHHHH
Confidence            34578875 34455677889999999999998875543  23332    2     4688999999999986433333333


Q ss_pred             HhCCCccCCcceEEEEeeccCCCChHHHHHHHHHHhh
Q 030289          141 KLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVS  177 (180)
Q Consensus       141 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  177 (180)
                      .+.     ..+.+++++||.++.|++++++.+.+.+.
T Consensus        74 ~~~-----~~g~~~i~iSA~~~~gi~~L~~~i~~~l~  105 (282)
T 1puj_A           74 HFE-----NQGIRSLSINSVNGQGLNQIVPASKEILQ  105 (282)
T ss_dssp             HHH-----TTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred             HHH-----hcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence            321     23457899999999999999998877664

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.85  E-value=2.7e-09  Score=76.61  Aligned_cols=55  Identities=25%  Similarity=0.390  Sum_probs=36.7

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCccccc--c--ccceeEEEEEEcCeEEEEEEcCCCC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTI--P--TIGFNVETVEYKNVSFTVWDVGGQD   71 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~--~--t~~~~~~~~~~~~~~~~i~D~~G~~   71 (180)
                      ...++++++|.+|||||||+|+|.+.......  |  |....  .+.. +..+.+|||||-.
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~-~~~~~l~DtpG~~  176 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKV-GKELELLDTPGIL  176 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEE-TTTEEEEECCCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEe-CCCEEEEECcCcC
Confidence            46789999999999999999999977632222  2  22221  2222 3478999999954

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.72  E-value=2.3e-08  Score=75.67  Aligned_cols=110  Identities=23%  Similarity=0.251  Sum_probs=62.9

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhc------CC--ccc---ccc-----------ccceeEEEE-----------------
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKL------GE--IVT---TIP-----------TIGFNVETV-----------------   55 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~------~~--~~~---~~~-----------t~~~~~~~~-----------------   55 (180)
                      +...|+++|++|+||||++..|..      .+  ...   +.+           ..++.....                 
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a  178 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF  178 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence            357889999999999999988863      22  000   101           111111100                 


Q ss_pred             EEcCeEEEEEEcCCCCCChhhH-H-----hhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCC
Q 030289           56 EYKNVSFTVWDVGGQDKIRPLW-R-----HYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDL  129 (180)
Q Consensus        56 ~~~~~~~~i~D~~G~~~~~~~~-~-----~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~  129 (180)
                      ...++.+.++||+|........ .     .....+|.+++|+|+..........   ..+...    -.+..+|+||.|.
T Consensus       179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a---~~f~~~----~~i~gVIlTKlD~  251 (443)
T 3dm5_A          179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQA---LAFKEA----TPIGSIIVTKLDG  251 (443)
T ss_dssp             HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH---HHHHHS----CTTEEEEEECCSS
T ss_pred             HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHH---HHHHhh----CCCeEEEEECCCC
Confidence            0024789999999955432211 1     1223579999999987543322222   222211    2345789999998


Q ss_pred             CC
Q 030289          130 PN  131 (180)
Q Consensus       130 ~~  131 (180)
                      ..
T Consensus       252 ~~  253 (443)
T 3dm5_A          252 SA  253 (443)
T ss_dssp             CS
T ss_pred             cc
Confidence            75

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.63  E-value=6.7e-08  Score=75.72  Aligned_cols=60  Identities=20%  Similarity=0.183  Sum_probs=41.0

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhhcCCcc-cccc-----ccceeEEEEE---EcCeEEEEEEcCCCC
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP-----TIGFNVETVE---YKNVSFTVWDVGGQD   71 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~-----t~~~~~~~~~---~~~~~~~i~D~~G~~   71 (180)
                      ...+..+|+|+|.+|+|||||+|+|++.... ....     |.+.......   ..+..+.++||||-.
T Consensus        34 i~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~  102 (592)
T 1f5n_A           34 ITQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG  102 (592)
T ss_dssp             CCSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence            3566788999999999999999999987621 2222     2222211111   246789999999944

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.54  E-value=1.2e-07  Score=71.80  Aligned_cols=108  Identities=21%  Similarity=0.253  Sum_probs=62.4

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcC------C--ccccc--------------------------cccce-eE--EEE-EE
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLG------E--IVTTI--------------------------PTIGF-NV--ETV-EY   57 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~------~--~~~~~--------------------------~t~~~-~~--~~~-~~   57 (180)
                      ...|+++|++|+||||+++.|...      +  .....                          .+.+. ..  ..+ ..
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~  178 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF  178 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence            467999999999999999998641      1  00000                          00000 00  000 01


Q ss_pred             cCeEEEEEEcCCCCCChhhHH----h--hccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCC-e-EEEEEecCCC
Q 030289           58 KNVSFTVWDVGGQDKIRPLWR----H--YFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREA-V-LLVFANKQDL  129 (180)
Q Consensus        58 ~~~~~~i~D~~G~~~~~~~~~----~--~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~-iiiv~nK~D~  129 (180)
                      .++.+.++||||.........    .  ....+|.+++|+|+.....   .......+.     ... | ..+|+||.|.
T Consensus       179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~-----~~~~~i~gvVlnK~D~  250 (432)
T 2v3c_C          179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFK-----EAVGEIGSIIVTKLDG  250 (432)
T ss_dssp             SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHH-----TTSCSCEEEEEECSSS
T ss_pred             hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHh-----hcccCCeEEEEeCCCC
Confidence            567899999999765422111    1  1225899999999864421   112222221     234 4 7899999998


Q ss_pred             CC
Q 030289          130 PN  131 (180)
Q Consensus       130 ~~  131 (180)
                      ..
T Consensus       251 ~~  252 (432)
T 2v3c_C          251 SA  252 (432)
T ss_dssp             CS
T ss_pred             cc
Confidence            64

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.51  E-value=7.3e-08  Score=76.19  Aligned_cols=23  Identities=26%  Similarity=0.375  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCC
Q 030289           18 RILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      .++|+|++|||||||++.+.+-.
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC
T ss_pred             eEEEECCCCChHHHHHHHHhCCC
Confidence            49999999999999999998754

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=98.35  E-value=2.4e-08  Score=76.66  Aligned_cols=96  Identities=26%  Similarity=0.284  Sum_probs=54.7

Q ss_pred             hcccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEE----cCeEEEEEEcCCCCC--ChhhH-------
Q 030289           11 LFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY----KNVSFTVWDVGGQDK--IRPLW-------   77 (180)
Q Consensus        11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~--~~~~~-------   77 (180)
                      .+...+.+|+++|.+|+||||+.++|...-.....++..+....+..    ......+||..|...  .+..+       
T Consensus        34 ~~~~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~  113 (469)
T 1bif_A           34 CMTNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALND  113 (469)
T ss_dssp             ----CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHH
Confidence            34566789999999999999999998754322222222221111101    113346788888632  22222       


Q ss_pred             -HhhccccCEEEEEEECCChhhHHHHHHHHH
Q 030289           78 -RHYFQNTHGLIFVVDSNDRERIGEAKDELH  107 (180)
Q Consensus        78 -~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~  107 (180)
                       ..++...++.++|+|.++.. .+.-..|..
T Consensus       114 ~~~~l~~~~G~~vV~D~tn~~-~~~R~~~~~  143 (469)
T 1bif_A          114 VRKFLSEEGGHVAVFDATNTT-RERRAMIFN  143 (469)
T ss_dssp             HHHHHHTTCCSEEEEESCCCS-HHHHHHHHH
T ss_pred             HHHHHHhCCCCEEEEeCCCCC-HHHHHHHHH
Confidence             45566678889999998763 344444433

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.31  E-value=4.7e-06  Score=63.09  Aligned_cols=110  Identities=22%  Similarity=0.295  Sum_probs=62.1

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhc------CC--ccc---ccc-----------ccceeEEEE-----------------
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKL------GE--IVT---TIP-----------TIGFNVETV-----------------   55 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~------~~--~~~---~~~-----------t~~~~~~~~-----------------   55 (180)
                      +...|+++|++||||||++..|..      .+  ...   +.+           ..+......                 
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a  175 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF  175 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence            356788999999999999988862      22  000   000           111111100                 


Q ss_pred             EEcCeEEEEEEcCCCCC--Chh-h---HHh--hccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecC
Q 030289           56 EYKNVSFTVWDVGGQDK--IRP-L---WRH--YFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQ  127 (180)
Q Consensus        56 ~~~~~~~~i~D~~G~~~--~~~-~---~~~--~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~  127 (180)
                      ...+..+.++||||...  ... .   ...  .....+.+++|+|+............+...       -.+..+|+||.
T Consensus       176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~-------~~~~gVIlTKl  248 (433)
T 3kl4_A          176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQA-------SPIGSVIITKM  248 (433)
T ss_dssp             TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHH-------CSSEEEEEECG
T ss_pred             HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcc-------cCCcEEEEecc
Confidence            00257899999999644  211 1   111  112468999999997543322333333322       13467899999


Q ss_pred             CCCC
Q 030289          128 DLPN  131 (180)
Q Consensus       128 D~~~  131 (180)
                      |...
T Consensus       249 D~~a  252 (433)
T 3kl4_A          249 DGTA  252 (433)
T ss_dssp             GGCS
T ss_pred             cccc
Confidence            9764

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.31  E-value=8.9e-07  Score=63.97  Aligned_cols=66  Identities=14%  Similarity=0.145  Sum_probs=40.5

Q ss_pred             cCeEEEEEEcCCCCC--Chh-hHH-----hhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCe-EEEEEecCC
Q 030289           58 KNVSFTVWDVGGQDK--IRP-LWR-----HYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV-LLVFANKQD  128 (180)
Q Consensus        58 ~~~~~~i~D~~G~~~--~~~-~~~-----~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iiiv~nK~D  128 (180)
                      .++.+.++||||...  ... ...     .....+|.+++|+|+....   ........+.     ...+ ..+|+||.|
T Consensus       179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~-----~~~~i~gvVlnk~D  250 (297)
T 1j8m_F          179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFN-----QASKIGTIIITKMD  250 (297)
T ss_dssp             TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHH-----HTCTTEEEEEECGG
T ss_pred             CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHH-----hhCCCCEEEEeCCC
Confidence            457899999999776  422 221     1344689999999986432   1222222221     1234 678899999


Q ss_pred             CCC
Q 030289          129 LPN  131 (180)
Q Consensus       129 ~~~  131 (180)
                      ...
T Consensus       251 ~~~  253 (297)
T 1j8m_F          251 GTA  253 (297)
T ss_dssp             GCT
T ss_pred             CCc
Confidence            764

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.14  E-value=5e-07  Score=64.13  Aligned_cols=93  Identities=6%  Similarity=0.013  Sum_probs=59.4

Q ss_pred             cCCCCC-ChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCC
Q 030289           67 VGGQDK-IRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLH  145 (180)
Q Consensus        67 ~~G~~~-~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~  145 (180)
                      .|||.. ........+.++|+++.|+|+.++.+....  .+. +     . ++|.++|+||+|+.+....+.+.+.+.  
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~--~l~-l-----l-~k~~iivlNK~DL~~~~~~~~~~~~~~--   72 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY--GVD-F-----S-RKETIILLNKVDIADEKTTKKWVEFFK--   72 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT--TSC-C-----T-TSEEEEEEECGGGSCHHHHHHHHHHHH--
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh--HHH-h-----c-CCCcEEEEECccCCCHHHHHHHHHHHH--
Confidence            466553 345567788999999999999877543211  011 1     1 688999999999987433333333221  


Q ss_pred             ccCCcceEEEEeeccCCCChHHHHHHHHH
Q 030289          146 SLRQRRWYIQAACATSGQGLYEGLDWLSS  174 (180)
Q Consensus       146 ~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  174 (180)
                         ..+.++ .+||.++.|++++++.+.+
T Consensus        73 ---~~g~~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           73 ---KQGKRV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             ---HTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred             ---HcCCeE-EEECCCCcCHHHHHHHHHH
Confidence               223457 9999999999999887644

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=98.08  E-value=1.9e-05  Score=59.95  Aligned_cols=109  Identities=24%  Similarity=0.254  Sum_probs=61.1

Q ss_pred             ccEEEEEcCCCCChHHHHHHhh-------cCC--cc---cccc-----------ccceeEEE--------------E---
Q 030289           16 EMRILMVGLDAAGKTTILYKLK-------LGE--IV---TTIP-----------TIGFNVET--------------V---   55 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~-------~~~--~~---~~~~-----------t~~~~~~~--------------~---   55 (180)
                      ...|+++|++|+||||++..|.       +.+  ..   .+.+           ..++....              +   
T Consensus       100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~  179 (433)
T 2xxa_A          100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEA  179 (433)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHH
Confidence            4578899999999999998886       222  10   1001           00111100              0   


Q ss_pred             EEcCeEEEEEEcCCCCCChh-hHH-----hhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCe-EEEEEecCC
Q 030289           56 EYKNVSFTVWDVGGQDKIRP-LWR-----HYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV-LLVFANKQD  128 (180)
Q Consensus        56 ~~~~~~~~i~D~~G~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iiiv~nK~D  128 (180)
                      ...++.+.++||||...... ...     .....++.+++|+|+......   ......+..     ..+ .-+|+||.|
T Consensus       180 ~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~-----~l~i~gvVlnK~D  251 (433)
T 2xxa_A          180 KLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNE-----ALPLTGVVLTKVD  251 (433)
T ss_dssp             HHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHH-----HSCCCCEEEECTT
T ss_pred             HhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhc-----cCCCeEEEEecCC
Confidence            01467899999999765422 211     123468899999998743222   122222211     123 346899999


Q ss_pred             CCCC
Q 030289          129 LPNA  132 (180)
Q Consensus       129 ~~~~  132 (180)
                      ....
T Consensus       252 ~~~~  255 (433)
T 2xxa_A          252 GDAR  255 (433)
T ss_dssp             SSSC
T ss_pred             CCcc
Confidence            7643

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.07  E-value=1.1e-06  Score=63.74  Aligned_cols=88  Identities=13%  Similarity=0.112  Sum_probs=58.0

Q ss_pred             hhHHhhccccCEEEEEEECCChhh-HHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC----HhHHHhHhCCCccCC
Q 030289           75 PLWRHYFQNTHGLIFVVDSNDRER-IGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS----VSEVTDKLGLHSLRQ  149 (180)
Q Consensus        75 ~~~~~~~~~~~~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~----~~~~~~~~~~~~~~~  149 (180)
                      .+.+....++|.+++|+|+.++.. ...+..++...    +..++|.++|+||+|+.++..    .+++.+.+     ..
T Consensus        78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~----~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y-----~~  148 (307)
T 1t9h_A           78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLV----EANDIQPIICITKMDLIEDQDTEDTIQAYAEDY-----RN  148 (307)
T ss_dssp             EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHH----HTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHH-----HH
T ss_pred             hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHH----HHCCCCEEEEEECCccCchhhhHHHHHHHHHHH-----Hh
Confidence            344457889999999999986543 33333333222    225788999999999987532    23333322     12


Q ss_pred             cceEEEEeeccCCCChHHHHHH
Q 030289          150 RRWYIQAACATSGQGLYEGLDW  171 (180)
Q Consensus       150 ~~~~~~~~Sa~~~~~i~~~~~~  171 (180)
                      .+.+++.+|+.++.|+++++..
T Consensus       149 ~g~~v~~~sa~~~~g~~~L~~~  170 (307)
T 1t9h_A          149 IGYDVYLTSSKDQDSLADIIPH  170 (307)
T ss_dssp             HTCCEEECCHHHHTTCTTTGGG
T ss_pred             CCCeEEEEecCCCCCHHHHHhh
Confidence            3457899999999998877653

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.98  E-value=9.1e-06  Score=59.47  Aligned_cols=25  Identities=40%  Similarity=0.583  Sum_probs=21.4

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      .+.--++++|++||||||+++.+.+
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag  151 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLAN  151 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456788999999999999998864

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.94  E-value=6.2e-05  Score=50.00  Aligned_cols=108  Identities=12%  Similarity=0.074  Sum_probs=47.6

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhh----ccccCEEEEEEE
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHY----FQNTHGLIFVVD   92 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~----~~~~~~~i~v~d   92 (180)
                      .-++|+|++|+|||||+++|...-     +..+.....+......+ -+|.+|.+.++.....+    ........++..
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l-----~~~g~~v~~i~~~~~~~-~id~~g~Ds~~~~~~G~~~v~i~~~~~~~~~~~   80 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPAL-----CARGIRPGLIKHTHHDM-DVDKPGKDSYELRKAGAAQTIVASQQRWALMTE   80 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH-----HHTTCCEEEEEECCC-------------CHHHHTCSEEEEECSSEEEEEEE
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhc-----cccCCceeEEeeCCCcc-ccCCCCCceEEEEeCCcceeecccchhheeeee
Confidence            457899999999999999998532     11122233344333333 23566655443222111    011112222232


Q ss_pred             C--CChhhHHHHHHHHHHH------hcccccCCCeEEEEEecCCCC
Q 030289           93 S--NDRERIGEAKDELHRM------LSEDELREAVLLVFANKQDLP  130 (180)
Q Consensus        93 ~--~~~~~~~~~~~~~~~~------~~~~~~~~~~iiiv~nK~D~~  130 (180)
                      .  ..+..+..+...+...      +........|.+++.+|.+..
T Consensus        81 ~~~~~~~~L~~ll~r~~~~~~D~ilIEg~k~~~~pki~v~~~~~~~  126 (174)
T 1np6_A           81 TPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGH  126 (174)
T ss_dssp             CSSSCCCCHHHHHHHSCGGGCSEEEEESCSSCCSEEEEEECTTSSC
T ss_pred             ccCCchhhHHHHHHhcCCCcchHHHHHHHhhcCCCEEEEEecccCC
Confidence            1  1224455554332210      111123468999999988754

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.93  E-value=5.2e-06  Score=55.46  Aligned_cols=23  Identities=35%  Similarity=0.549  Sum_probs=20.0

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcC
Q 030289           17 MRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      .+++++|++|+|||||++.+.+.
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            37899999999999999888753

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.89  E-value=2.1e-05  Score=59.80  Aligned_cols=25  Identities=12%  Similarity=0.171  Sum_probs=21.0

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      .+-.-|.|+|++++|||||+|+|++
T Consensus        65 ~~v~vVsV~G~~~~GKStLLN~llg   89 (447)
T 3q5d_A           65 KEVVAVSVAGAFRKGKSFLMDFMLR   89 (447)
T ss_dssp             SBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHhh
Confidence            3445567999999999999999985

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.85  E-value=9.9e-06  Score=54.09  Aligned_cols=23  Identities=17%  Similarity=0.355  Sum_probs=20.4

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhc
Q 030289           16 EMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      .--++|+|++|||||||++.|..
T Consensus         5 g~~i~i~GpsGsGKSTL~~~L~~   27 (180)
T 1kgd_A            5 RKTLVLLGAHGVGRRHIKNTLIT   27 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            44689999999999999999975

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.82  E-value=8.7e-06  Score=55.26  Aligned_cols=22  Identities=36%  Similarity=0.495  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCChHHHHHHhhc
Q 030289           17 MRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~   38 (180)
                      -.++|+|++|||||||++.|.+
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4689999999999999998875

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.79  E-value=1.4e-05  Score=54.06  Aligned_cols=30  Identities=17%  Similarity=0.337  Sum_probs=23.1

Q ss_pred             hhcccCccEEEEEcCCCCChHHHHHHhhcC
Q 030289           10 MLFARKEMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        10 ~~~~~~~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      +..+++.--|+|+||+|||||||++.|...
T Consensus        13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             ---CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCCCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence            334456677899999999999999999743

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.78  E-value=6.1e-05  Score=55.64  Aligned_cols=83  Identities=20%  Similarity=0.157  Sum_probs=52.9

Q ss_pred             hccccCEEEEEEECCChh-hHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC---HhHHHhHhCCCccCCcceEEE
Q 030289           80 YFQNTHGLIFVVDSNDRE-RIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS---VSEVTDKLGLHSLRQRRWYIQ  155 (180)
Q Consensus        80 ~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~  155 (180)
                      ...++|.+++|.+.. +. +...+..++...    ...++|.++|+||+|+.++..   .+++...+     ...+.+++
T Consensus       127 i~anvD~v~iv~a~~-P~~~~~~i~r~L~~a----~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y-----~~~G~~v~  196 (358)
T 2rcn_A          127 IAANIDQIVIVSAIL-PELSLNIIDRYLVGC----ETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIY-----RNIGYRVL  196 (358)
T ss_dssp             EEECCCEEEEEEEST-TTCCHHHHHHHHHHH----HHHTCEEEEEEECGGGCCHHHHHHHHHHHHHH-----HTTTCCEE
T ss_pred             HHhcCCEEEEEEeCC-CCCCHHHHHHHHHHH----HhcCCCEEEEEECccCCCchhHHHHHHHHHHH-----HhCCCcEE
Confidence            357889999886654 43 333333443322    124677899999999987432   22222222     23455799


Q ss_pred             EeeccCCCChHHHHHHH
Q 030289          156 AACATSGQGLYEGLDWL  172 (180)
Q Consensus       156 ~~Sa~~~~~i~~~~~~l  172 (180)
                      .+|+.++.|++++...+
T Consensus       197 ~~Sa~~~~gl~~L~~~~  213 (358)
T 2rcn_A          197 MVSSHTQDGLKPLEEAL  213 (358)
T ss_dssp             ECBTTTTBTHHHHHHHH
T ss_pred             EEecCCCcCHHHHHHhc
Confidence            99999999999887654

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.73  E-value=1.5e-05  Score=54.07  Aligned_cols=24  Identities=21%  Similarity=0.271  Sum_probs=20.5

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      .--++++|++|||||||++.|.+.
T Consensus         7 g~ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            7 ANLFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhh
Confidence            346899999999999999988753

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=97.73  E-value=0.0004  Score=46.90  Aligned_cols=70  Identities=11%  Similarity=0.041  Sum_probs=47.7

Q ss_pred             cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhccc-ccCCCeEEEEEecCCCCC
Q 030289           58 KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSED-ELREAVLLVFANKQDLPN  131 (180)
Q Consensus        58 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiiv~nK~D~~~  131 (180)
                      ..+.+.++|+|+..  .......+..+|.++++...+...  ......+..+.... ..++.++.+|+|+.|...
T Consensus        74 ~~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~  144 (206)
T 4dzz_A           74 ADYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA  144 (206)
T ss_dssp             TTSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE
T ss_pred             CCCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc
Confidence            35789999999866  445566777899999999875433  45554444443221 134667899999999643

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.72  E-value=1.6e-05  Score=54.88  Aligned_cols=24  Identities=17%  Similarity=0.220  Sum_probs=20.6

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      .--++|+||+|||||||++.+.+.
T Consensus        16 G~ii~l~GpsGsGKSTLlk~L~g~   39 (219)
T 1s96_A           16 GTLYIVSAPSGAGKSSLIQALLKT   39 (219)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcc
Confidence            346889999999999999998754

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.72  E-value=1.9e-05  Score=53.94  Aligned_cols=26  Identities=19%  Similarity=0.257  Sum_probs=22.5

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhc
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ......|+|+|++|||||||++.|.+
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~   44 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAA   44 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            35678899999999999999988864

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.72  E-value=1.6e-05  Score=54.29  Aligned_cols=25  Identities=24%  Similarity=0.332  Sum_probs=20.8

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcC
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      ..--++++|++|||||||++.+.+-
T Consensus        19 ~Gei~~l~GpnGsGKSTLl~~l~gl   43 (207)
T 1znw_A           19 VGRVVVLSGPSAVGKSTVVRCLRER   43 (207)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            3445889999999999999988753

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.71  E-value=2.3e-05  Score=53.50  Aligned_cols=26  Identities=19%  Similarity=0.276  Sum_probs=22.1

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      .+.--|+|+||+|||||||++.|...
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~   31 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKD   31 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence            44567899999999999999999754

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.71  E-value=1.8e-05  Score=52.42  Aligned_cols=23  Identities=22%  Similarity=0.268  Sum_probs=18.9

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhc
Q 030289           16 EMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      .--++++|++|||||||++.+..
T Consensus         9 gei~~l~G~nGsGKSTl~~~~~~   31 (171)
T 4gp7_A            9 LSLVVLIGSSGSGKSTFAKKHFK   31 (171)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHSC
T ss_pred             CEEEEEECCCCCCHHHHHHHHcc
Confidence            34578999999999999997553

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.68  E-value=2.5e-05  Score=52.37  Aligned_cols=24  Identities=29%  Similarity=0.259  Sum_probs=21.0

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      .-.++++|++|||||||++.|.+.
T Consensus         9 g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            9 GNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhc
Confidence            456899999999999999999764

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.68  E-value=2.5e-05  Score=52.96  Aligned_cols=27  Identities=19%  Similarity=0.300  Sum_probs=21.6

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhhc
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      +......|+|.|++||||||+.+.|..
T Consensus        14 m~~~~~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           14 VRRFPGSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             -CCCSSCEEEECSTTSCHHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            334456899999999999999998864

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.68  E-value=1.9e-05  Score=54.35  Aligned_cols=24  Identities=25%  Similarity=0.367  Sum_probs=20.7

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhc
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ..-.++|+|++|||||||++.+.+
T Consensus        22 ~G~~~~lvGpsGsGKSTLl~~L~g   45 (218)
T 1z6g_A           22 NIYPLVICGPSGVGKGTLIKKLLN   45 (218)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHh
Confidence            345689999999999999998875

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.67  E-value=2.3e-05  Score=52.64  Aligned_cols=21  Identities=38%  Similarity=0.534  Sum_probs=19.0

Q ss_pred             EEEEcCCCCChHHHHHHhhcC
Q 030289           19 ILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        19 i~i~G~~~~GKStli~~l~~~   39 (180)
                      |+|+||+|||||||+++|...
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999743

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.66  E-value=7.1e-05  Score=56.57  Aligned_cols=67  Identities=16%  Similarity=0.138  Sum_probs=37.5

Q ss_pred             cCeEEEEEEcCCCCCChh-hHH-----hhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289           58 KNVSFTVWDVGGQDKIRP-LWR-----HYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN  131 (180)
Q Consensus        58 ~~~~~~i~D~~G~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~  131 (180)
                      .++.+.++||||...... ...     .....+|.+++|+|+....   ........+...    -...-+|+||.|...
T Consensus       179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq---~av~~a~~f~~~----l~i~GVIlTKlD~~~  251 (425)
T 2ffh_A          179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ---EALSVARAFDEK----VGVTGLVLTKLDGDA  251 (425)
T ss_dssp             TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHH----TCCCEEEEESGGGCS
T ss_pred             CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH---HHHHHHHHHHhc----CCceEEEEeCcCCcc
Confidence            456799999999664422 111     1122588899999986432   222222222111    112466889999754

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.66  E-value=2.4e-05  Score=54.52  Aligned_cols=25  Identities=20%  Similarity=0.279  Sum_probs=20.9

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      .=.++++|++|||||||++.+.+-.
T Consensus        31 Ge~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           31 GEFVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCC
Confidence            3458899999999999999887544

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.64  E-value=3.2e-05  Score=54.14  Aligned_cols=26  Identities=27%  Similarity=0.493  Sum_probs=21.1

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhh
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLK   37 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~   37 (180)
                      +..+...|+|+|++|||||||++.|.
T Consensus        23 ~~~~~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           23 MASKLLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             ---CCCEEEEECCTTSSHHHHHHHHH
T ss_pred             hcCCCcEEEEECCCCCCHHHHHHHHH
Confidence            34455789999999999999999988

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.62  E-value=2.9e-05  Score=50.77  Aligned_cols=27  Identities=30%  Similarity=0.322  Sum_probs=22.0

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      ...--++++|+.|+|||||++.+.+..
T Consensus        31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           31 EKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            334468899999999999999887644

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.61  E-value=3.1e-05  Score=53.62  Aligned_cols=24  Identities=33%  Similarity=0.562  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCC
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      =.++++|++|||||||++.+.+-.
T Consensus        31 e~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           31 EFVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            357899999999999999887643

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.61  E-value=3e-05  Score=57.30  Aligned_cols=26  Identities=19%  Similarity=0.178  Sum_probs=22.3

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCCc
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGEI   41 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~~   41 (180)
                      .-.++|+|++|||||||+|.|.+...
T Consensus       215 G~~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          215 GRISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             CCEEEEECCCCccHHHHHHHHhcccc
Confidence            44789999999999999999987543

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.58  E-value=4.4e-05  Score=51.77  Aligned_cols=26  Identities=23%  Similarity=0.322  Sum_probs=21.8

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      ....|+++|++||||||+++.|.+.-
T Consensus         5 ~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            5 KGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            35579999999999999999887543

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.58  E-value=3.8e-05  Score=52.41  Aligned_cols=25  Identities=36%  Similarity=0.335  Sum_probs=20.9

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      .+...|+|+|++|||||||++.|.+
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALAR   28 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999988865

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.57  E-value=3.7e-05  Score=54.85  Aligned_cols=25  Identities=16%  Similarity=0.155  Sum_probs=20.8

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      .=.++++|++|||||||++.+.+-.
T Consensus        34 Ge~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           34 GEVTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHcCC
Confidence            3457899999999999999887643

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.56  E-value=5.3e-05  Score=51.31  Aligned_cols=30  Identities=33%  Similarity=0.410  Sum_probs=23.5

Q ss_pred             hhhcccCccEEEEEcCCCCChHHHHHHhhc
Q 030289            9 KMLFARKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus         9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      .+..+...+.|+|.|++||||||+.+.|..
T Consensus        13 ~~~~~~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           13 GLVPRGSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             ---CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             cccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            344566778999999999999999988863

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.56  E-value=3.9e-05  Score=53.64  Aligned_cols=24  Identities=21%  Similarity=0.152  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCC
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      =.++++|++|||||||++.+.+-.
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCC
Confidence            357899999999999999887643

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.56  E-value=4.1e-05  Score=52.60  Aligned_cols=24  Identities=25%  Similarity=0.225  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCC
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      =.++++|++|+|||||++.+++-.
T Consensus        36 e~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           36 NVVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            357899999999999999887653

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.56  E-value=4e-05  Score=54.31  Aligned_cols=25  Identities=28%  Similarity=0.365  Sum_probs=20.8

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      .=-++++|++|||||||++.+.+-.
T Consensus        32 Ge~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           32 GDVISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3357899999999999999887643

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.55  E-value=4.2e-05  Score=54.32  Aligned_cols=25  Identities=28%  Similarity=0.295  Sum_probs=20.9

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      .=.++++|++|||||||++.+.+-.
T Consensus        37 Ge~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           37 GEMVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCC
Confidence            3457899999999999999887643

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.55  E-value=5.1e-05  Score=50.73  Aligned_cols=23  Identities=17%  Similarity=0.143  Sum_probs=20.3

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhc
Q 030289           16 EMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ...|+|.|++||||||+.+.|..
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999988853

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.55  E-value=4.9e-05  Score=51.67  Aligned_cols=24  Identities=21%  Similarity=0.332  Sum_probs=20.7

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhc
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ...-|+|+|++||||||+++.|..
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~   34 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLS   34 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHH
Confidence            345689999999999999999864

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.54  E-value=5.1e-05  Score=49.90  Aligned_cols=20  Identities=30%  Similarity=0.471  Sum_probs=18.6

Q ss_pred             cEEEEEcCCCCChHHHHHHh
Q 030289           17 MRILMVGLDAAGKTTILYKL   36 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l   36 (180)
                      ..|++.|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999999

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.54  E-value=4.2e-05  Score=51.28  Aligned_cols=21  Identities=24%  Similarity=0.346  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChHHHHHHhhc
Q 030289           18 RILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~   38 (180)
                      .++++|++|||||||++.|..
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999974

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.54  E-value=4.4e-05  Score=53.93  Aligned_cols=25  Identities=20%  Similarity=0.243  Sum_probs=20.8

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      .=.++++|++|||||||++.+.+-.
T Consensus        33 Ge~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           33 GDVTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3457899999999999999887643

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.53  E-value=4.5e-05  Score=50.25  Aligned_cols=22  Identities=41%  Similarity=0.457  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCChHHHHHHhhc
Q 030289           17 MRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ..|+++|++||||||+.+.|..
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~   26 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQ   26 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998875

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.52  E-value=4.8e-05  Score=53.09  Aligned_cols=25  Identities=24%  Similarity=0.288  Sum_probs=21.0

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      .=.++++|++|||||||++.+.+-.
T Consensus        31 Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           31 GALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3468899999999999999887654

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.52  E-value=5.7e-05  Score=49.92  Aligned_cols=25  Identities=12%  Similarity=0.353  Sum_probs=21.0

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      +....|+++|++||||||+.+.|..
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            3456799999999999999988864

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.52  E-value=4.4e-05  Score=51.43  Aligned_cols=22  Identities=27%  Similarity=0.409  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChHHHHHHhhcC
Q 030289           18 RILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~   39 (180)
                      .++++|++|+|||||++.+.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            5889999999999999888753

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.52  E-value=4.9e-05  Score=53.90  Aligned_cols=25  Identities=32%  Similarity=0.446  Sum_probs=20.8

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      .=.++++|++|||||||++.+.+-.
T Consensus        50 Gei~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           50 GEVVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHcCC
Confidence            3457899999999999999887643

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.51  E-value=5.1e-05  Score=53.05  Aligned_cols=25  Identities=28%  Similarity=0.290  Sum_probs=20.9

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      .=.++++|++|+|||||++.+.+-.
T Consensus        32 Ge~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           32 GQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3457899999999999999887643

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.51  E-value=5.1e-05  Score=52.66  Aligned_cols=25  Identities=24%  Similarity=0.256  Sum_probs=21.0

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      .=.++++|++|+|||||++.+.+-.
T Consensus        34 Ge~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           34 GQLLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3467899999999999999887654

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.51  E-value=5.7e-05  Score=52.92  Aligned_cols=24  Identities=29%  Similarity=0.293  Sum_probs=20.6

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      .=.++++|++|||||||++.+.+-
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (243)
T 1mv5_A           28 NSIIAFAGPSGGGKSTIFSLLERF   51 (243)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            346889999999999999988754

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.51  E-value=5.7e-05  Score=53.04  Aligned_cols=25  Identities=24%  Similarity=0.169  Sum_probs=20.9

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      .=.++++|++|||||||++.+.+-.
T Consensus        35 Ge~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           35 GEVIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3468899999999999999887643

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.50  E-value=6.4e-05  Score=50.94  Aligned_cols=24  Identities=25%  Similarity=0.397  Sum_probs=20.7

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhc
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ....|+++|++||||||+++.|.+
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999988864

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.50  E-value=5.3e-05  Score=53.51  Aligned_cols=25  Identities=28%  Similarity=0.208  Sum_probs=21.0

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      .=.++++|++|||||||++.+.+-.
T Consensus        41 Gei~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           41 GEIFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCC
Confidence            3457899999999999999887643

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.50  E-value=5.4e-05  Score=53.24  Aligned_cols=25  Identities=28%  Similarity=0.359  Sum_probs=20.9

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      .=.++++|++|+|||||++.+.+-.
T Consensus        26 Ge~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           26 GEILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCC
Confidence            3357899999999999999887654

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.50  E-value=3.6e-05  Score=53.35  Aligned_cols=23  Identities=26%  Similarity=0.336  Sum_probs=16.3

Q ss_pred             CccEEEEEcCCCCChHHHHHHhh
Q 030289           15 KEMRILMVGLDAAGKTTILYKLK   37 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~   37 (180)
                      ..--++++|++|||||||++.|.
T Consensus        26 ~G~ii~l~Gp~GsGKSTl~~~L~   48 (231)
T 3lnc_A           26 VGVILVLSSPSGCGKTTVANKLL   48 (231)
T ss_dssp             CCCEEEEECSCC----CHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHH
Confidence            34568999999999999999998

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.48  E-value=5.7e-05  Score=53.13  Aligned_cols=24  Identities=25%  Similarity=0.181  Sum_probs=20.7

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      .=.++++|++|+|||||++.+.+-
T Consensus        29 Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           29 GEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            335789999999999999998874

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.48  E-value=6.4e-05  Score=49.39  Aligned_cols=21  Identities=33%  Similarity=0.357  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHhhc
Q 030289           18 RILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~   38 (180)
                      .|+|.|++||||||+.+.|..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998863

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.48  E-value=7.9e-05  Score=49.31  Aligned_cols=22  Identities=32%  Similarity=0.380  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCChHHHHHHhhc
Q 030289           17 MRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ..|++.|++||||||+.+.|..
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999875

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.47  E-value=6.8e-05  Score=49.61  Aligned_cols=22  Identities=27%  Similarity=0.329  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCCChHHHHHHhhc
Q 030289           17 MRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ..|++.|++||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4589999999999999999986

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.47  E-value=1.8e-05  Score=57.31  Aligned_cols=25  Identities=16%  Similarity=0.333  Sum_probs=21.0

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      .-.++++|++|||||||+|.|.+..
T Consensus       173 G~~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          173 DKTTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred             CCEEEEECCCCCCHHHHHHHhcccc
Confidence            4578999999999999999998654

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.47  E-value=6.8e-05  Score=51.29  Aligned_cols=21  Identities=38%  Similarity=0.559  Sum_probs=19.1

Q ss_pred             cEEEEEcCCCCChHHHHHHhh
Q 030289           17 MRILMVGLDAAGKTTILYKLK   37 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~   37 (180)
                      ++|+|.|++||||||+.+.|.
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~   21 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQII   21 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999885

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.47  E-value=4.5e-05  Score=52.16  Aligned_cols=24  Identities=17%  Similarity=0.232  Sum_probs=20.7

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      .=.++++|++|+|||||++.+.+-
T Consensus        22 Ge~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           22 NTIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            345889999999999999988765

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.47  E-value=6.2e-05  Score=53.51  Aligned_cols=24  Identities=21%  Similarity=0.205  Sum_probs=20.8

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      .=.++++|++|||||||++.+.+-
T Consensus        46 Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           46 GEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            345789999999999999988875

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.46  E-value=7e-05  Score=53.00  Aligned_cols=24  Identities=29%  Similarity=0.217  Sum_probs=20.7

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      .=.++++|++|+|||||++.+.+-
T Consensus        46 Ge~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           46 GTTCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcc
Confidence            346899999999999999988764

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=97.46  E-value=7.1e-05  Score=53.54  Aligned_cols=25  Identities=40%  Similarity=0.515  Sum_probs=20.9

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      .=.++++|++|||||||++.+.+-.
T Consensus        47 Ge~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           47 GDKWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCC
Confidence            3467899999999999999887643

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.46  E-value=7.4e-05  Score=51.16  Aligned_cols=21  Identities=33%  Similarity=0.515  Sum_probs=19.1

Q ss_pred             cEEEEEcCCCCChHHHHHHhh
Q 030289           17 MRILMVGLDAAGKTTILYKLK   37 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~   37 (180)
                      ++|+|.|++||||||+.+.|.
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~   21 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIV   21 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999885

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.45  E-value=6.6e-05  Score=53.48  Aligned_cols=25  Identities=24%  Similarity=0.203  Sum_probs=20.8

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      .=.++|+|++|+|||||++.+.+-.
T Consensus        45 Ge~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           45 GKVTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3457899999999999999887643

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.45  E-value=9.5e-05  Score=49.41  Aligned_cols=27  Identities=26%  Similarity=0.393  Sum_probs=22.8

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcC
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      ..+..+|+++|++||||||+.+.|...
T Consensus         7 ~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            7 QPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            345678999999999999999988654

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=97.45  E-value=6.6e-05  Score=52.93  Aligned_cols=24  Identities=25%  Similarity=0.236  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCC
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      =.++++|++|||||||++.+.+-.
T Consensus        32 e~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           32 DILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            357899999999999999887654

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.45  E-value=6.5e-05  Score=54.32  Aligned_cols=25  Identities=28%  Similarity=0.418  Sum_probs=21.5

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      .-.++++|++|||||||+|.+.+..
T Consensus       169 geiv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          169 GKISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             CCeEEEECCCCCcHHHHHHHhcccc
Confidence            3467899999999999999998654

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.44  E-value=6.6e-05  Score=54.33  Aligned_cols=24  Identities=33%  Similarity=0.616  Sum_probs=20.8

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      .-.++++|++|||||||+|.+. ..
T Consensus       165 G~i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          165 GFICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred             CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence            3467899999999999999998 44

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.44  E-value=8.8e-05  Score=49.93  Aligned_cols=23  Identities=30%  Similarity=0.229  Sum_probs=20.3

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhc
Q 030289           16 EMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ...|++.|++||||||+.+.|..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999988864

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=97.44  E-value=7e-05  Score=53.20  Aligned_cols=25  Identities=24%  Similarity=0.207  Sum_probs=20.8

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      .=.++++|++|||||||++.+.+-.
T Consensus        33 Ge~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           33 GECLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCC
Confidence            3457899999999999999887643

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.44  E-value=6.6e-05  Score=53.16  Aligned_cols=25  Identities=32%  Similarity=0.352  Sum_probs=21.3

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ...=.++|+|++|||||||++.+.+
T Consensus        23 ~~g~~v~i~Gp~GsGKSTll~~l~g   47 (261)
T 2eyu_A           23 RKMGLILVTGPTGSGKSTTIASMID   47 (261)
T ss_dssp             CSSEEEEEECSTTCSHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHH
Confidence            4455789999999999999998875

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.43  E-value=8e-05  Score=49.64  Aligned_cols=22  Identities=27%  Similarity=0.394  Sum_probs=20.0

Q ss_pred             ccEEEEEcCCCCChHHHHHHhh
Q 030289           16 EMRILMVGLDAAGKTTILYKLK   37 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~   37 (180)
                      ...|+++|++||||||+.+.|.
T Consensus         4 g~~I~l~G~~GsGKST~~~~La   25 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLA   25 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4579999999999999999886

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.43  E-value=8.7e-05  Score=50.14  Aligned_cols=28  Identities=25%  Similarity=0.203  Sum_probs=22.9

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhhcC
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      ++.+...|+|.|++||||||+.+.|...
T Consensus         4 ~~~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            4 EAKHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             --CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             cccCceEEEEECCCCCCHHHHHHHHHHC
Confidence            4566788999999999999999988754

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.43  E-value=8.4e-05  Score=49.80  Aligned_cols=24  Identities=25%  Similarity=0.321  Sum_probs=20.2

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhc
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      +...|++.|++||||||+.+.|..
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            356799999999999999988853

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=97.43  E-value=0.00068  Score=43.39  Aligned_cols=27  Identities=15%  Similarity=0.170  Sum_probs=23.2

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      .....|++.|++|+|||++.+.+....
T Consensus        22 ~~~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           22 ETDIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence            567789999999999999998887543

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.42  E-value=9.5e-05  Score=49.27  Aligned_cols=22  Identities=36%  Similarity=0.501  Sum_probs=19.8

Q ss_pred             ccEEEEEcCCCCChHHHHHHhh
Q 030289           16 EMRILMVGLDAAGKTTILYKLK   37 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~   37 (180)
                      ..+|+++|++||||||+.+.|.
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La   26 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLA   26 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            4579999999999999999885

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.42  E-value=8.5e-05  Score=51.16  Aligned_cols=23  Identities=26%  Similarity=0.222  Sum_probs=20.2

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhc
Q 030289           16 EMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ...|+++|++||||||+.+.|..
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999988864

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.42  E-value=9.2e-05  Score=50.32  Aligned_cols=24  Identities=33%  Similarity=0.403  Sum_probs=21.0

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhc
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      +...|+|.|++||||||+.+.|..
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Confidence            456899999999999999998864

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.42  E-value=7.5e-05  Score=54.01  Aligned_cols=25  Identities=20%  Similarity=0.268  Sum_probs=21.1

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      .+.=.++|+|++|+|||||++.|.+
T Consensus       124 ~~Ge~vaIvGpsGsGKSTLl~lL~g  148 (305)
T 2v9p_A          124 PKKNCLAFIGPPNTGKSMLCNSLIH  148 (305)
T ss_dssp             TTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhh
Confidence            3456789999999999999988863

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.41  E-value=9.6e-05  Score=50.04  Aligned_cols=25  Identities=32%  Similarity=0.485  Sum_probs=21.4

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      .+...|+++|++||||||+.+.|..
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~   47 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQ   47 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999988864

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.41  E-value=9.4e-05  Score=50.50  Aligned_cols=22  Identities=32%  Similarity=0.404  Sum_probs=19.5

Q ss_pred             cEEEEEcCCCCChHHHHHHhhc
Q 030289           17 MRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ++|+|+|+|||||+|...+|..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999988863

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.41  E-value=8.3e-05  Score=50.40  Aligned_cols=22  Identities=27%  Similarity=0.320  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCCChHHHHHHhhc
Q 030289           17 MRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~   38 (180)
                      .+|+|+|++||||||+.+.|..
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3799999999999999998875

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.41  E-value=8.8e-05  Score=53.90  Aligned_cols=26  Identities=27%  Similarity=0.178  Sum_probs=22.4

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhc
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      .....-|+|+|++|||||||++.+.+
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~g  112 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQA  112 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHh
Confidence            35667899999999999999988875

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.40  E-value=0.00011  Score=48.87  Aligned_cols=26  Identities=19%  Similarity=0.212  Sum_probs=21.6

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      ...-.+++.|++|+|||||++.+.+.
T Consensus        36 ~~g~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           36 EEGKGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             GGCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            34567899999999999999888643

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.39  E-value=0.0001  Score=49.35  Aligned_cols=23  Identities=35%  Similarity=0.403  Sum_probs=20.2

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhc
Q 030289           16 EMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ...|++.|++||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998863

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.39  E-value=0.00016  Score=50.61  Aligned_cols=25  Identities=28%  Similarity=0.413  Sum_probs=22.2

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      .+.++|+|.|++||||||+.+.|..
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999999998863

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=97.38  E-value=9.9e-05  Score=52.31  Aligned_cols=25  Identities=24%  Similarity=0.387  Sum_probs=21.0

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      .=.++++|++|+|||||++.+.+-.
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468899999999999999887653

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.38  E-value=0.00012  Score=49.55  Aligned_cols=23  Identities=35%  Similarity=0.431  Sum_probs=20.1

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhc
Q 030289           16 EMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ...|+++|++||||||+.+.|..
T Consensus        25 ~~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           25 MVRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            45799999999999999988863

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.38  E-value=0.00011  Score=49.64  Aligned_cols=21  Identities=33%  Similarity=0.460  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHHHhhc
Q 030289           18 RILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~   38 (180)
                      .|+|.|++||||||+.+.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999988864

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=97.38  E-value=0.00012  Score=50.35  Aligned_cols=25  Identities=24%  Similarity=0.284  Sum_probs=19.6

Q ss_pred             cCccEE-EEEcCCCCChHHHHHHhhc
Q 030289           14 RKEMRI-LMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        14 ~~~~~i-~i~G~~~~GKStli~~l~~   38 (180)
                      .++.|| +|+|+|||||+|...+|..
T Consensus        26 ~~k~kiI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           26 LAKAKVIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             TTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            445555 4789999999999988863

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.37  E-value=0.00011  Score=51.48  Aligned_cols=25  Identities=28%  Similarity=0.272  Sum_probs=21.6

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      .....|+|+|++|||||||++.|.+
T Consensus        23 ~~g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           23 MRPFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4456799999999999999998865

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.37  E-value=0.00013  Score=51.37  Aligned_cols=24  Identities=29%  Similarity=0.218  Sum_probs=21.4

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhh
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLK   37 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~   37 (180)
                      ++...|+|+|++||||||+.+.|.
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHH
Confidence            456789999999999999998887

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.36  E-value=7.7e-05  Score=49.56  Aligned_cols=25  Identities=24%  Similarity=0.139  Sum_probs=16.6

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ++...|++.|.+||||||+.+.|..
T Consensus         3 ~~~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            3 MRSPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             --CCEEEEECCC----CHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4456899999999999999998863

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=97.36  E-value=8e-05  Score=51.65  Aligned_cols=28  Identities=25%  Similarity=0.267  Sum_probs=23.3

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhhcC
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      ...+..-|+|.|+.||||||+++.|.+.
T Consensus        16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence            3355678999999999999999988754

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.36  E-value=0.00011  Score=49.87  Aligned_cols=22  Identities=27%  Similarity=0.170  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCChHHHHHHhhc
Q 030289           17 MRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~   38 (180)
                      +.|+++|++||||||+.+.|..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998875

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.36  E-value=0.00011  Score=49.10  Aligned_cols=21  Identities=33%  Similarity=0.491  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChHHHHHHhhc
Q 030289           18 RILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~   38 (180)
                      .|+|.|++||||||+.+.|..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988864

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.35  E-value=0.00011  Score=49.76  Aligned_cols=26  Identities=27%  Similarity=0.369  Sum_probs=22.0

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhc
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      .....-|+++|++||||||+++.|..
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999988864

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=97.35  E-value=0.0042  Score=42.24  Aligned_cols=68  Identities=4%  Similarity=-0.070  Sum_probs=46.7

Q ss_pred             cCeEEEEEEcCCC-CCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289           58 KNVSFTVWDVGGQ-DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN  131 (180)
Q Consensus        58 ~~~~~~i~D~~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~  131 (180)
                      ..+.+.++|+|+. ...  .....+..+|.++++...+ ..++......+..+...   .+.++.+|+|+.|...
T Consensus        66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~~  134 (209)
T 3cwq_A           66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKL---GNNRFRILLTIIPPYP  134 (209)
T ss_dssp             GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHT---CSSSEEEEECSBCCTT
T ss_pred             hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhc---cCCCEEEEEEecCCcc
Confidence            4578999999987 433  3455677899999999875 45555555555544331   1456889999998764

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.35  E-value=9.2e-05  Score=50.98  Aligned_cols=24  Identities=21%  Similarity=0.212  Sum_probs=20.7

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhc
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ..--++|+|++|||||||++.+++
T Consensus        24 ~G~~~~l~G~nGsGKSTll~~l~g   47 (231)
T 4a74_A           24 TQAITEVFGEFGSGKTQLAHTLAV   47 (231)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            344688999999999999999976

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.35  E-value=0.00013  Score=50.07  Aligned_cols=24  Identities=29%  Similarity=0.470  Sum_probs=20.9

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhc
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      +..+|+|+|++||||||+.+.|..
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999988853

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.34  E-value=0.00014  Score=49.13  Aligned_cols=25  Identities=32%  Similarity=0.421  Sum_probs=21.6

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcC
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      +...|+|.|++||||||+.+.|...
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            3568999999999999999988753

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.34  E-value=0.00012  Score=50.05  Aligned_cols=22  Identities=36%  Similarity=0.445  Sum_probs=19.4

Q ss_pred             cEEEEEcCCCCChHHHHHHhhc
Q 030289           17 MRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ++|+|.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999988853

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=97.33  E-value=0.00012  Score=52.60  Aligned_cols=25  Identities=24%  Similarity=0.256  Sum_probs=20.9

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      .=.++++|++|+|||||++.+.+-.
T Consensus        64 Ge~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           64 GQLLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCC
Confidence            3467899999999999999887643

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.32  E-value=0.00014  Score=48.33  Aligned_cols=24  Identities=33%  Similarity=0.324  Sum_probs=21.0

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhh
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLK   37 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~   37 (180)
                      ++...|++.|++||||||+.+.|.
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~   32 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELA   32 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHH
Confidence            345679999999999999999886

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=97.32  E-value=0.00013  Score=51.21  Aligned_cols=27  Identities=22%  Similarity=0.215  Sum_probs=21.2

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhhc
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ...+.+.|+|.|++||||||+.+.|..
T Consensus        18 ~~~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           18 NGGEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             ---CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence            344567899999999999999988854

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.32  E-value=0.00014  Score=52.27  Aligned_cols=25  Identities=20%  Similarity=0.242  Sum_probs=21.4

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      +....|++.|++||||||+.++|..
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4466789999999999999999863

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.31  E-value=0.00015  Score=49.24  Aligned_cols=25  Identities=32%  Similarity=0.397  Sum_probs=21.5

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcC
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      ....|+|+|++||||||+.+.|...
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            3567999999999999999988754

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=97.31  E-value=0.00015  Score=49.70  Aligned_cols=24  Identities=25%  Similarity=0.375  Sum_probs=20.8

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhc
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      +..+|+|.|++||||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            347899999999999999988853

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=97.30  E-value=0.00016  Score=50.11  Aligned_cols=29  Identities=31%  Similarity=0.301  Sum_probs=22.0

Q ss_pred             hhcccCccEEEEEcCCCCChHHHHHHhhc
Q 030289           10 MLFARKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        10 ~~~~~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ...+.+..+|+|+|++||||||+.+.|..
T Consensus        10 ~~~~~~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           10 VPESPKGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             ----CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            33455668999999999999999988863

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=97.30  E-value=0.00012  Score=54.16  Aligned_cols=24  Identities=29%  Similarity=0.357  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCC
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      =-++++|++|||||||++.+.+-.
T Consensus        55 ei~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           55 QIYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEEcCCCchHHHHHHHHhcCC
Confidence            357899999999999998887643

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=97.30  E-value=7.7e-05  Score=54.01  Aligned_cols=24  Identities=38%  Similarity=0.408  Sum_probs=20.6

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhc
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ..=.++|+|++|+|||||++.+.+
T Consensus        79 ~Ge~vaivG~sGsGKSTLl~ll~g  102 (306)
T 3nh6_A           79 PGQTLALVGPSGAGKSTILRLLFR  102 (306)
T ss_dssp             TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCchHHHHHHHHHc
Confidence            345789999999999999988875

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.30  E-value=0.00022  Score=51.31  Aligned_cols=26  Identities=15%  Similarity=0.220  Sum_probs=22.2

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhc
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      +.+...|+|.|++|||||||++.|..
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            45678899999999999999987753

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.30  E-value=9.1e-05  Score=54.98  Aligned_cols=25  Identities=20%  Similarity=0.329  Sum_probs=21.6

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      .-+++|+|++|+|||||++.|.+.-
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~  194 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVF  194 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHh
Confidence            5689999999999999999887643

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.30  E-value=0.00014  Score=52.93  Aligned_cols=25  Identities=32%  Similarity=0.259  Sum_probs=21.1

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhh
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLK   37 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~   37 (180)
                      ....+-|+|+|++|||||||++.|.
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~  113 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLK  113 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHH
Confidence            3456779999999999999998875

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.29  E-value=0.00015  Score=50.02  Aligned_cols=23  Identities=22%  Similarity=0.504  Sum_probs=20.1

Q ss_pred             CccEEEEEcCCCCChHHHHHHhh
Q 030289           15 KEMRILMVGLDAAGKTTILYKLK   37 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~   37 (180)
                      +...|+|.|++||||||+.+.|.
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La   28 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRIT   28 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHH
Confidence            34689999999999999999886

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.29  E-value=0.00017  Score=48.33  Aligned_cols=24  Identities=33%  Similarity=0.285  Sum_probs=20.9

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhc
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      +...|++.|++||||||+.+.|..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999988863

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.28  E-value=0.00017  Score=48.12  Aligned_cols=26  Identities=35%  Similarity=0.478  Sum_probs=22.1

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhc
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      .++...|+++|.+||||||+.+.|..
T Consensus        10 ~~~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           10 IEKGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             CSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            34567899999999999999988864

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=97.28  E-value=0.00013  Score=53.92  Aligned_cols=24  Identities=33%  Similarity=0.383  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCC
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      =-++++|++|||||||++.+.+-.
T Consensus        31 e~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           31 EILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCchHHHHHHHHhcCC
Confidence            357899999999999999887644

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.28  E-value=0.00018  Score=48.94  Aligned_cols=24  Identities=38%  Similarity=0.337  Sum_probs=21.2

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhc
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      +...|+|.|.+||||||+.+.|..
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHH
Confidence            467899999999999999998864

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.27  E-value=0.00018  Score=48.99  Aligned_cols=24  Identities=38%  Similarity=0.436  Sum_probs=21.2

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhc
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      +...|+|.|++||||||+.+.|..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999998863

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.27  E-value=0.00013  Score=52.78  Aligned_cols=24  Identities=42%  Similarity=0.566  Sum_probs=20.6

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhc
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      +.-.++++|++||||||+++.+.+
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lag  124 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGR  124 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHH
Confidence            355788999999999999998863

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.27  E-value=0.00016  Score=49.71  Aligned_cols=23  Identities=26%  Similarity=0.411  Sum_probs=20.2

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhc
Q 030289           16 EMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ...|+|+|++||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999988853

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.25  E-value=0.00019  Score=46.95  Aligned_cols=22  Identities=36%  Similarity=0.554  Sum_probs=19.5

Q ss_pred             cEEEEEcCCCCChHHHHHHhhc
Q 030289           17 MRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ++|+|.|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999988864

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.25  E-value=6.3e-05  Score=49.81  Aligned_cols=21  Identities=29%  Similarity=0.494  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHhhc
Q 030289           18 RILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~   38 (180)
                      .++|+|++|+|||||++.+.+
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~   24 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMP   24 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999998874

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.25  E-value=0.00015  Score=51.74  Aligned_cols=22  Identities=23%  Similarity=0.324  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHhhcC
Q 030289           18 RILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~   39 (180)
                      -++++|++|+|||||++.+.+.
T Consensus        46 GvlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           46 GVLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEEESSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            3999999999999999998753

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=97.25  E-value=0.00014  Score=52.53  Aligned_cols=23  Identities=43%  Similarity=0.566  Sum_probs=19.8

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhc
Q 030289           16 EMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      .--++++|++||||||+++.+.+
T Consensus       100 g~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A          100 PAVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            44688999999999999988864

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.25  E-value=0.00016  Score=47.79  Aligned_cols=21  Identities=29%  Similarity=0.520  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChHHHHHHhhc
Q 030289           18 RILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~   38 (180)
                      +|+|+|++||||||+.+.|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            699999999999999988853

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.24  E-value=0.00012  Score=47.31  Aligned_cols=25  Identities=24%  Similarity=0.256  Sum_probs=21.1

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcC
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      ..-.++++|++|+|||+|++.+.+.
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH
Confidence            4457889999999999999988753

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.24  E-value=0.00017  Score=52.27  Aligned_cols=25  Identities=32%  Similarity=0.280  Sum_probs=21.8

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      .+..-|+|+|++|||||||++.|.+
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999988875

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=97.23  E-value=0.00016  Score=53.37  Aligned_cols=24  Identities=33%  Similarity=0.308  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCC
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      =-++++|++|||||||++.+.+-.
T Consensus        42 e~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           42 EMVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            357899999999999999887643

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.23  E-value=0.0002  Score=49.76  Aligned_cols=25  Identities=16%  Similarity=0.268  Sum_probs=20.6

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhh
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLK   37 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~   37 (180)
                      .++++.|+|.|++|+||||+.+.|.
T Consensus         6 ~~~~~~i~i~G~~GsGKsTla~~la   30 (233)
T 3r20_A            6 VSGSLVVAVDGPAGTGKSSVSRGLA   30 (233)
T ss_dssp             ---CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHH
Confidence            3457899999999999999998886

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.23  E-value=0.00023  Score=52.62  Aligned_cols=25  Identities=24%  Similarity=0.242  Sum_probs=21.2

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ...=.++|+|++|||||||++.+++
T Consensus       121 ~~~g~i~I~GptGSGKTTlL~~l~g  145 (356)
T 3jvv_A          121 VPRGLVLVTGPTGSGKSTTLAAMLD  145 (356)
T ss_dssp             CSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHh
Confidence            3444899999999999999998865

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=97.22  E-value=0.0002  Score=49.32  Aligned_cols=22  Identities=36%  Similarity=0.391  Sum_probs=19.3

Q ss_pred             cEEEEEcCCCCChHHHHHHhhc
Q 030289           17 MRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~   38 (180)
                      +.|+|.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999988853

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.22  E-value=0.00022  Score=48.20  Aligned_cols=26  Identities=31%  Similarity=0.239  Sum_probs=21.4

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhc
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      +.+...|+|.|++||||||+.+.|..
T Consensus        12 ~~~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           12 PDQVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            34455789999999999999988863

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=97.21  E-value=0.00018  Score=53.28  Aligned_cols=23  Identities=30%  Similarity=0.271  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcC
Q 030289           17 MRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      =-++++|++|||||||++.+.+-
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl   52 (359)
T 2yyz_A           30 EFVALLGPSGCGKTTTLLMLAGI   52 (359)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CEEEEEcCCCchHHHHHHHHHCC
Confidence            35789999999999999988764

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.21  E-value=0.00043  Score=45.84  Aligned_cols=26  Identities=27%  Similarity=0.371  Sum_probs=21.6

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      ...-.+++.|++|+|||+|++.+...
T Consensus        41 ~~~~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           41 RTKNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHH
Confidence            34567999999999999999888643

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=97.21  E-value=0.00028  Score=54.73  Aligned_cols=26  Identities=31%  Similarity=0.388  Sum_probs=22.0

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      ..-.++|+|++|||||||++.+++--
T Consensus       259 ~g~~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          259 HKFSAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             TTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            45569999999999999999998643

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=97.21  E-value=0.00018  Score=53.60  Aligned_cols=24  Identities=29%  Similarity=0.350  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCC
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      =-++++|++|||||||++.+.+-.
T Consensus        30 e~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           30 EFVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEEcCCCchHHHHHHHHHcCC
Confidence            357899999999999999887643

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=97.20  E-value=0.00018  Score=52.73  Aligned_cols=26  Identities=19%  Similarity=0.167  Sum_probs=22.0

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      ..-.++|+|++|+|||||++.+.+--
T Consensus       170 ~g~~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          170 IGKNVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             HTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34589999999999999999988643

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.20  E-value=0.00017  Score=53.53  Aligned_cols=27  Identities=30%  Similarity=0.342  Sum_probs=22.8

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      ...-.++|+|++|+|||||++.+.+--
T Consensus       173 ~~G~~i~ivG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          173 QLERVIVVAGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             HTTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            345689999999999999999998643

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=97.20  E-value=0.00018  Score=53.24  Aligned_cols=24  Identities=25%  Similarity=0.368  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCC
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      =-++++|++|||||||++.+.+-.
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           30 EFMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCchHHHHHHHHhcCC
Confidence            357899999999999999887643

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.19  E-value=0.00033  Score=48.37  Aligned_cols=24  Identities=17%  Similarity=0.155  Sum_probs=21.2

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhc
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ..-.+++.|++|+|||+|++.+..
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHH
Confidence            567899999999999999988864

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=97.18  E-value=0.0002  Score=53.25  Aligned_cols=23  Identities=30%  Similarity=0.359  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCC
Q 030289           18 RILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      -++++|++|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCcHHHHHHHHHHcCC
Confidence            47899999999999999887644

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.17  E-value=0.00019  Score=50.33  Aligned_cols=22  Identities=27%  Similarity=0.366  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHhhcC
Q 030289           18 RILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~   39 (180)
                      .++++|++|+|||||++.+.+.
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4999999999999999988753

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=97.16  E-value=0.00021  Score=53.14  Aligned_cols=24  Identities=25%  Similarity=0.246  Sum_probs=20.2

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      .=-++++|++|||||||++.+.+-
T Consensus        37 Ge~~~llGpnGsGKSTLLr~iaGl   60 (372)
T 1v43_A           37 GEFLVLLGPSGCGKTTTLRMIAGL   60 (372)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCChHHHHHHHHHcC
Confidence            335789999999999999988764

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.14  E-value=0.00023  Score=50.09  Aligned_cols=21  Identities=24%  Similarity=0.352  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCChHHHHHHhhc
Q 030289           18 RILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~   38 (180)
                      .|+|+|++|||||||.+.|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998863

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=97.14  E-value=0.00024  Score=47.22  Aligned_cols=21  Identities=24%  Similarity=0.335  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCChHHHHHHhhc
Q 030289           18 RILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~   38 (180)
                      -.+|+|++|+|||||+..+..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999998853

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=97.14  E-value=0.00029  Score=47.12  Aligned_cols=21  Identities=43%  Similarity=0.444  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHhhc
Q 030289           18 RILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~   38 (180)
                      .|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988864

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.13  E-value=0.00019  Score=50.54  Aligned_cols=25  Identities=36%  Similarity=0.425  Sum_probs=21.2

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      .....|+++|++||||||+.+.|..
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4457899999999999999988753

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.13  E-value=0.0003  Score=46.63  Aligned_cols=24  Identities=33%  Similarity=0.523  Sum_probs=20.9

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhc
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      +...|+++|++||||||+.+.|..
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999988864

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.12  E-value=0.00033  Score=52.14  Aligned_cols=25  Identities=32%  Similarity=0.352  Sum_probs=21.3

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ...-.++|+|++|||||||++.+.+
T Consensus       134 ~~g~~i~ivG~~GsGKTTll~~l~~  158 (372)
T 2ewv_A          134 RKMGLILVTGPTGSGKSTTIASMID  158 (372)
T ss_dssp             SSSEEEEEECSSSSSHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHh
Confidence            3455799999999999999998875

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.11  E-value=0.00032  Score=48.03  Aligned_cols=23  Identities=17%  Similarity=0.205  Sum_probs=20.6

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhc
Q 030289           16 EMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      .+.|+|.|++||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            56899999999999999998864

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=97.10  E-value=0.00025  Score=52.52  Aligned_cols=23  Identities=43%  Similarity=0.566  Sum_probs=19.9

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhc
Q 030289           16 EMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      .--++++|++||||||+++.+.+
T Consensus       157 g~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          157 PAVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHh
Confidence            44688999999999999988864

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.09  E-value=0.00037  Score=45.97  Aligned_cols=22  Identities=32%  Similarity=0.336  Sum_probs=19.5

Q ss_pred             cEEEEEcCCCCChHHHHHHhhc
Q 030289           17 MRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~   38 (180)
                      .-++|+|++|||||||+++|..
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4588999999999999999874

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.08  E-value=0.00047  Score=52.11  Aligned_cols=30  Identities=33%  Similarity=0.403  Sum_probs=23.2

Q ss_pred             hhhcccCccEEEEEcCCCCChHHHHHHhhc
Q 030289            9 KMLFARKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus         9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      +..+....=.++|+|++|||||||++.+++
T Consensus       160 ~~l~~~~ggii~I~GpnGSGKTTlL~allg  189 (418)
T 1p9r_A          160 RRLIKRPHGIILVTGPTGSGKSTTLYAGLQ  189 (418)
T ss_dssp             HHHHTSSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             HHHHHhcCCeEEEECCCCCCHHHHHHHHHh
Confidence            344444444689999999999999999875

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=97.07  E-value=0.00016  Score=53.23  Aligned_cols=24  Identities=25%  Similarity=0.209  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCC
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      =-++++|++|||||||++.+.+-.
T Consensus        27 e~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           27 EYFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             CEEEEECCCCccHHHHHHHHHcCC
Confidence            357899999999999999887643

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=97.07  E-value=0.00028  Score=52.77  Aligned_cols=23  Identities=26%  Similarity=0.410  Sum_probs=19.9

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhc
Q 030289           16 EMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      .=.++++|++|||||||++.+.+
T Consensus        47 Ge~~~llGpsGsGKSTLLr~iaG   69 (390)
T 3gd7_A           47 GQRVGLLGRTGSGKSTLLSAFLR   69 (390)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCChHHHHHHHHhC
Confidence            34578999999999999988875

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=97.07  E-value=0.00049  Score=46.73  Aligned_cols=21  Identities=29%  Similarity=0.384  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHhhc
Q 030289           18 RILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~   38 (180)
                      .+++.|++|+|||++++.+..
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~   60 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALAR   60 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            499999999999999988864

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.06  E-value=0.00038  Score=46.42  Aligned_cols=22  Identities=18%  Similarity=0.194  Sum_probs=19.5

Q ss_pred             cEEEEEcCCCCChHHHHHHhhc
Q 030289           17 MRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ..|++.|++||||||+.+.|..
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999988863

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.06  E-value=0.00032  Score=46.68  Aligned_cols=21  Identities=38%  Similarity=0.591  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChHHHHHHhhc
Q 030289           18 RILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~   38 (180)
                      .|+++|++||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999988853

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.06  E-value=0.00028  Score=51.72  Aligned_cols=23  Identities=26%  Similarity=0.322  Sum_probs=20.0

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcC
Q 030289           17 MRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      -.++++|++|+|||||++.+.+.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            45899999999999999988753

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.06  E-value=0.00011  Score=50.10  Aligned_cols=21  Identities=43%  Similarity=0.542  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChHHHHHHhhc
Q 030289           18 RILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~   38 (180)
                      -|+|.|++||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            488999999999999998863

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.05  E-value=0.0003  Score=48.39  Aligned_cols=24  Identities=21%  Similarity=0.263  Sum_probs=20.2

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhc
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      +.--++++|++|+|||||+..+..
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           22 QGFFIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHH
Confidence            345688999999999999998873

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=97.05  E-value=0.00037  Score=49.82  Aligned_cols=25  Identities=20%  Similarity=0.396  Sum_probs=21.8

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhh
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLK   37 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~   37 (180)
                      +.+.+.|+|.|++||||||+.+.|.
T Consensus        72 ~~~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           72 PSGLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             CTTCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHH
Confidence            3456789999999999999998886

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.05  E-value=0.00033  Score=45.99  Aligned_cols=21  Identities=38%  Similarity=0.455  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChHHHHHHhhc
Q 030289           18 RILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~   38 (180)
                      .|+|.|++||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999988853

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.05  E-value=0.00036  Score=45.05  Aligned_cols=19  Identities=26%  Similarity=0.574  Sum_probs=17.1

Q ss_pred             EEEEcCCCCChHHHHHHhh
Q 030289           19 ILMVGLDAAGKTTILYKLK   37 (180)
Q Consensus        19 i~i~G~~~~GKStli~~l~   37 (180)
                      .+|+|++|+|||||+.++.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4799999999999999875

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.05  E-value=0.00029  Score=50.14  Aligned_cols=22  Identities=27%  Similarity=0.366  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHhhcC
Q 030289           18 RILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~   39 (180)
                      .++++|++|+|||||++.+.+.
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcChHHHHHHHHHHH
Confidence            3899999999999999988753

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.04  E-value=0.00038  Score=49.17  Aligned_cols=22  Identities=36%  Similarity=0.533  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCCChHHHHHHhhc
Q 030289           17 MRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ..|++.|.+||||||+.+.|..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            4799999999999999998864

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=97.04  E-value=0.00025  Score=51.67  Aligned_cols=22  Identities=36%  Similarity=0.440  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHHhhcC
Q 030289           18 RILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~   39 (180)
                      -++|+|+.|||||||++.+.+.
T Consensus         6 v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            6 VTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEEecCCCCHHHHHHHHHhh
Confidence            4579999999999999999854

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=97.03  E-value=0.00054  Score=45.24  Aligned_cols=25  Identities=28%  Similarity=0.437  Sum_probs=21.2

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ...-.+++.|++|+|||+|++.+..
T Consensus        41 ~~~~~vll~G~~G~GKT~la~~~~~   65 (187)
T 2p65_A           41 RTKNNPILLGDPGVGKTAIVEGLAI   65 (187)
T ss_dssp             SSSCEEEEESCGGGCHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHH
Confidence            3456789999999999999988864

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=97.02  E-value=0.00043  Score=47.03  Aligned_cols=22  Identities=14%  Similarity=0.154  Sum_probs=18.7

Q ss_pred             cEEEEEcCCCCChHHHHHHhhc
Q 030289           17 MRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~   38 (180)
                      -.+++.||||+|||+++.++..
T Consensus        59 n~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           59 NCLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3599999999999999877763

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=97.01  E-value=0.00041  Score=46.79  Aligned_cols=25  Identities=32%  Similarity=0.291  Sum_probs=21.8

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      -.++.|++.|.+||||||+.+.|..
T Consensus        10 ~~~~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           10 HHHMVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHH
Confidence            3578899999999999999988864

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=97.01  E-value=0.00043  Score=45.33  Aligned_cols=22  Identities=23%  Similarity=0.578  Sum_probs=19.1

Q ss_pred             cEEEEEcCCCCChHHHHHHhhc
Q 030289           17 MRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~   38 (180)
                      -+|++.|.+||||||+.+.|..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3688999999999999988853

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=97.01  E-value=0.00032  Score=53.90  Aligned_cols=24  Identities=46%  Similarity=0.600  Sum_probs=20.3

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhc
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ..--++|+|++|||||||++.|.+
T Consensus       292 ~GeVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          292 APFVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCcccHHHHHHHHHH
Confidence            345688999999999999988863

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=97.00  E-value=0.00035  Score=51.49  Aligned_cols=27  Identities=26%  Similarity=0.224  Sum_probs=23.2

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      .+.=+++++|++|+|||||++.+.+..
T Consensus        69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           69 GIGQRIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             ETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            456689999999999999999998754

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.99  E-value=0.00016  Score=53.41  Aligned_cols=24  Identities=29%  Similarity=0.311  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCC
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      =-++++|++|||||||++.+.+-.
T Consensus        32 e~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           32 ERFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            357899999999999999887643

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.98  E-value=0.00037  Score=49.24  Aligned_cols=28  Identities=32%  Similarity=0.229  Sum_probs=21.8

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhhcC
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      ...+...|+|.|..||||||+++.|...
T Consensus        20 ~~~~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           20 EGTRIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             ---CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             cccCceEEEEECCCCCCHHHHHHHHHHh
Confidence            3356678999999999999999888643

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.98  E-value=0.00054  Score=47.49  Aligned_cols=25  Identities=24%  Similarity=0.316  Sum_probs=21.7

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      .+..-|+|.|++||||||+++.|..
T Consensus        24 ~~g~~i~i~G~~GsGKsT~~~~l~~   48 (229)
T 4eaq_A           24 AMSAFITFEGPEGSGKTTVINEVYH   48 (229)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            3567899999999999999988864

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.97  E-value=0.00033  Score=53.56  Aligned_cols=27  Identities=26%  Similarity=0.265  Sum_probs=22.7

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      ...-.++|+|++|||||||++.|++-.
T Consensus       136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          136 FEGPRVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence            355679999999999999999887644

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.95  E-value=0.00069  Score=45.70  Aligned_cols=22  Identities=23%  Similarity=0.241  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCCChHHHHHHhhc
Q 030289           17 MRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~   38 (180)
                      -.+++.|++|+|||+|+..+..
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~   76 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIAN   76 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999988864

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.94  E-value=0.00043  Score=54.01  Aligned_cols=25  Identities=28%  Similarity=0.320  Sum_probs=21.0

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcC
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      +.=-++++|++|||||||++.+.+-
T Consensus        24 ~Gei~gLiGpNGaGKSTLlkiL~Gl   48 (538)
T 3ozx_A           24 NNTILGVLGKNGVGKTTVLKILAGE   48 (538)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcC
Confidence            3445789999999999999988864

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.93  E-value=0.00043  Score=48.67  Aligned_cols=23  Identities=26%  Similarity=0.342  Sum_probs=20.3

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhc
Q 030289           16 EMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      .-+|+++|++||||||+.+.|..
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            55899999999999999988854

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.93  E-value=0.00064  Score=49.85  Aligned_cols=34  Identities=18%  Similarity=0.315  Sum_probs=23.7

Q ss_pred             HHHhhhcccCc-cEEEEEcCCCCChHHHHHHhhcC
Q 030289            6 SRLKMLFARKE-MRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus         6 ~~~~~~~~~~~-~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      ..+........ .+++|.|++|+||||+++.+...
T Consensus        35 ~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           35 TTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             HHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHH
Confidence            33433333332 24899999999999999888653

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.92  E-value=0.00043  Score=49.75  Aligned_cols=24  Identities=21%  Similarity=0.239  Sum_probs=20.0

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhc
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ..--++|+|++|+|||||+..+.+
T Consensus        34 ~G~~~~i~G~~G~GKTTl~~~ia~   57 (296)
T 1cr0_A           34 GGEVIMVTSGSGMGKSTFVRQQAL   57 (296)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHH
Confidence            344588999999999999988764

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.92  E-value=0.0006  Score=47.86  Aligned_cols=23  Identities=30%  Similarity=0.359  Sum_probs=20.2

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhc
Q 030289           16 EMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      .-.+++.|++|+|||+|++.+.+
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~   67 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAG   67 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHH
Confidence            44699999999999999998874

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.92  E-value=0.0005  Score=53.70  Aligned_cols=26  Identities=27%  Similarity=0.270  Sum_probs=21.5

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      ..=.++++|++|+|||||++.+.+-.
T Consensus        46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           46 EGMVVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34468999999999999999887643

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.91  E-value=0.00063  Score=46.37  Aligned_cols=25  Identities=32%  Similarity=0.607  Sum_probs=21.2

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      .....|++.|++||||||+.+.|..
T Consensus        23 ~~~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           23 QRGLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHH
Confidence            4456789999999999999988764

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.89  E-value=0.00051  Score=46.86  Aligned_cols=24  Identities=29%  Similarity=0.290  Sum_probs=20.8

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhc
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ..--++++|++|+|||||+..+..
T Consensus        19 ~G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           19 PGVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            345689999999999999999976

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=96.88  E-value=0.00052  Score=50.97  Aligned_cols=19  Identities=21%  Similarity=0.487  Sum_probs=17.3

Q ss_pred             EEEEcCCCCChHHHHHHhh
Q 030289           19 ILMVGLDAAGKTTILYKLK   37 (180)
Q Consensus        19 i~i~G~~~~GKStli~~l~   37 (180)
                      .+|+|++|||||||++.++
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5699999999999999986

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.87  E-value=0.00092  Score=45.90  Aligned_cols=21  Identities=33%  Similarity=0.368  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChHHHHHHhhc
Q 030289           18 RILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~   38 (180)
                      .++|.|++|+|||+|++.+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999988864

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.87  E-value=0.00069  Score=46.90  Aligned_cols=25  Identities=32%  Similarity=0.468  Sum_probs=20.1

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      -.+++.+|+|++||||||+..+|..
T Consensus         6 ~~~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            6 HHHMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             ---CEEEEECCTTSCHHHHHHHHHH
T ss_pred             ccccceeeECCCCCCHHHHHHHHHH
Confidence            3578999999999999999988853

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.87  E-value=0.00053  Score=47.52  Aligned_cols=25  Identities=28%  Similarity=0.193  Sum_probs=21.4

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ...--++|+|++|+|||||+..+..
T Consensus        22 ~~G~~~~i~G~~GsGKTtl~~~l~~   46 (243)
T 1n0w_A           22 ETGSITEMFGEFRTGKTQICHTLAV   46 (243)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHHH
Confidence            3455789999999999999999886

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.86  E-value=0.00078  Score=46.74  Aligned_cols=25  Identities=24%  Similarity=0.345  Sum_probs=21.7

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      .+...|+|+|++|+||||+.+.|..
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999988864

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=96.86  E-value=0.00057  Score=53.88  Aligned_cols=25  Identities=24%  Similarity=0.267  Sum_probs=21.1

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcC
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      +.=.++++|++|+|||||++.+.+-
T Consensus       368 ~G~~~~ivG~sGsGKSTLl~~l~g~  392 (582)
T 3b60_A          368 AGKTVALVGRSGSGKSTIASLITRF  392 (582)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhc
Confidence            3457899999999999999988753

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.85  E-value=0.00052  Score=52.70  Aligned_cols=22  Identities=23%  Similarity=0.300  Sum_probs=19.1

Q ss_pred             cEEEEEcCCCCChHHHHHHhhc
Q 030289           17 MRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~   38 (180)
                      --++|+|++|+|||||++.+.+
T Consensus        30 e~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHhc
Confidence            4578999999999999988864

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.84  E-value=0.00057  Score=54.07  Aligned_cols=25  Identities=28%  Similarity=0.246  Sum_probs=21.3

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcC
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      ..=.++++|++|+|||||++.+.+-
T Consensus       102 ~Gei~~LvGpNGaGKSTLLkiL~Gl  126 (608)
T 3j16_B          102 PGQVLGLVGTNGIGKSTALKILAGK  126 (608)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcC
Confidence            3456899999999999999988764

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.81  E-value=0.00061  Score=51.80  Aligned_cols=27  Identities=15%  Similarity=0.145  Sum_probs=23.0

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      .+.=+++|+|++|+|||||++.+.+..
T Consensus       155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          155 GRGQRMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             BTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            455689999999999999999888654

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.81  E-value=0.00095  Score=49.02  Aligned_cols=21  Identities=29%  Similarity=0.377  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHhhc
Q 030289           18 RILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~   38 (180)
                      +++|.|++|+||||+++.+.+
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            399999999999999988865

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.81  E-value=0.00073  Score=48.56  Aligned_cols=22  Identities=27%  Similarity=0.329  Sum_probs=19.6

Q ss_pred             cEEEEEcCCCCChHHHHHHhhc
Q 030289           17 MRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ..|++.|++||||||+.++|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998875

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=96.81  E-value=0.00067  Score=53.47  Aligned_cols=25  Identities=24%  Similarity=0.288  Sum_probs=21.1

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcC
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      +.=.++++|++|+|||||++.+.+-
T Consensus       368 ~G~~~~ivG~sGsGKSTll~~l~g~  392 (582)
T 3b5x_A          368 QGKTVALVGRSGSGKSTIANLFTRF  392 (582)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3457899999999999999888753

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.80  E-value=0.00043  Score=49.75  Aligned_cols=25  Identities=24%  Similarity=0.313  Sum_probs=18.2

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      .+.+-|+|.|++||||||+.+.|..
T Consensus         3 ~~~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            3 KKHPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             TTSCEEEEESCC---CCTHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH
Confidence            3567799999999999999988753

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.80  E-value=0.00085  Score=48.34  Aligned_cols=110  Identities=19%  Similarity=0.217  Sum_probs=59.7

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhc------C-C--ccc---cccc-----------cceeEEE------E-----EEcCe
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKL------G-E--IVT---TIPT-----------IGFNVET------V-----EYKNV   60 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~------~-~--~~~---~~~t-----------~~~~~~~------~-----~~~~~   60 (180)
                      +.-.++++|++|+||||++..|..      + +  ...   +.++           .+.....      +     ...+.
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~  183 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEY  183 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCC
Confidence            456789999999999999988752      2 1  000   0000           0100000      0     01456


Q ss_pred             EEEEEEcCCCCCChh-hH---Hhhcc--ccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289           61 SFTVWDVGGQDKIRP-LW---RHYFQ--NTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN  131 (180)
Q Consensus        61 ~~~i~D~~G~~~~~~-~~---~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~  131 (180)
                      ++.++||+|...... ..   ...+.  ..+.+++|+|++..  ...+.++...+.    .-+ ..-+|.||.|...
T Consensus       184 dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~----~l~-~~giVltk~D~~~  253 (296)
T 2px0_A          184 DHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFS----SVP-VNQYIFTKIDETT  253 (296)
T ss_dssp             SEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTS----SSC-CCEEEEECTTTCS
T ss_pred             CEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHh----cCC-CCEEEEeCCCccc
Confidence            899999999765432 11   12222  35778899987632  233333322221    111 2346679999764

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.77  E-value=0.00076  Score=53.39  Aligned_cols=26  Identities=31%  Similarity=0.273  Sum_probs=21.6

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      ..=.++++|++|+|||||++.+.+-.
T Consensus       116 ~Ge~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          116 DGMVVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCCC
Confidence            34468999999999999999887643

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=96.77  E-value=0.00058  Score=53.80  Aligned_cols=25  Identities=24%  Similarity=0.384  Sum_probs=20.9

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcC
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      +.=.++++|++|+|||||++.+.+-
T Consensus       366 ~G~~~~ivG~sGsGKSTll~~l~g~  390 (578)
T 4a82_A          366 KGETVAFVGMSGGGKSTLINLIPRF  390 (578)
T ss_dssp             TTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcC
Confidence            3457899999999999999877753

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.75  E-value=0.0013  Score=46.52  Aligned_cols=26  Identities=23%  Similarity=0.312  Sum_probs=22.3

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhc
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ......+++.|++|+|||+|+..+..
T Consensus        61 ~~~~~~vLl~G~~GtGKT~la~~ia~   86 (272)
T 1d2n_A           61 RTPLVSVLLEGPPHSGKTALAAKIAE   86 (272)
T ss_dssp             SCSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHH
Confidence            45567899999999999999988875

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.74  E-value=0.00095  Score=49.73  Aligned_cols=24  Identities=33%  Similarity=0.241  Sum_probs=20.8

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhc
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ..-.++++|++|+|||||++.+.+
T Consensus       168 ~~~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          168 KKRYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHh
Confidence            445789999999999999998874

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.74  E-value=0.0011  Score=47.56  Aligned_cols=24  Identities=21%  Similarity=0.293  Sum_probs=21.3

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhc
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ..-.+++.|++|+|||++++.+..
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~   76 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVAT   76 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHH
Confidence            456899999999999999998875

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.74  E-value=0.0011  Score=44.83  Aligned_cols=21  Identities=19%  Similarity=0.368  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHhhc
Q 030289           18 RILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~   38 (180)
                      .|+|.|++||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            789999999999999988854

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.73  E-value=0.00078  Score=52.58  Aligned_cols=24  Identities=29%  Similarity=0.152  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCC
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      =.++|+|++|+|||||++.+.+-.
T Consensus       295 ei~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          295 EIIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            357899999999999999988644

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.73  E-value=0.00069  Score=53.58  Aligned_cols=25  Identities=32%  Similarity=0.356  Sum_probs=21.1

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcC
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      +.=.++++|++|+|||||++.+.+-
T Consensus       380 ~G~~~~ivG~sGsGKSTll~~l~g~  404 (598)
T 3qf4_B          380 PGQKVALVGPTGSGKTTIVNLLMRF  404 (598)
T ss_dssp             TTCEEEEECCTTSSTTHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcC
Confidence            3457899999999999999888753

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.72  E-value=0.0015  Score=46.51  Aligned_cols=26  Identities=23%  Similarity=0.267  Sum_probs=22.1

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      ...-.+++.|++|+|||+|++.+...
T Consensus        49 ~~~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           49 EPPKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence            45567999999999999999998743

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.72  E-value=0.0009  Score=45.74  Aligned_cols=24  Identities=38%  Similarity=0.473  Sum_probs=20.3

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhc
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      +.+.|++.|++||||||+.+.|..
T Consensus         2 ~~~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            2 KAINIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             -CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999988754

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.72  E-value=0.00083  Score=42.87  Aligned_cols=26  Identities=8%  Similarity=0.161  Sum_probs=22.0

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      .....|++.|++|+|||++++.+...
T Consensus        25 ~~~~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           25 KRTSPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             TCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CCCCcEEEECCCCccHHHHHHHHHHh
Confidence            45678999999999999999877644

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.70  E-value=0.001  Score=44.94  Aligned_cols=27  Identities=19%  Similarity=0.240  Sum_probs=22.4

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      ....-|+|+|++|+|||+|...|....
T Consensus        32 ~~g~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           32 IYGLGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             ETTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             ECCEEEEEECCCCCCHHHHHHHHHHhC
Confidence            445678999999999999999997543

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.70  E-value=0.00093  Score=52.17  Aligned_cols=25  Identities=36%  Similarity=0.275  Sum_probs=21.3

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      .=.++|+|++|+|||||++.+.+-.
T Consensus       312 Ge~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          312 GEVIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468899999999999999988654

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.70  E-value=0.00082  Score=47.87  Aligned_cols=24  Identities=21%  Similarity=0.196  Sum_probs=20.1

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhc
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      +.--++|+|++|+|||||+..+..
T Consensus        29 ~G~i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           29 AGTVGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHH
Confidence            344688999999999999988864

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.69  E-value=0.0008  Score=53.10  Aligned_cols=24  Identities=17%  Similarity=0.302  Sum_probs=20.6

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhc
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ..=.++++|++|+|||||++.+.+
T Consensus       368 ~Ge~~~ivG~sGsGKSTll~~l~g  391 (587)
T 3qf4_A          368 PGSLVAVLGETGSGKSTLMNLIPR  391 (587)
T ss_dssp             TTCEEEEECSSSSSHHHHHHTTTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            345789999999999999988875

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.68  E-value=0.0011  Score=47.70  Aligned_cols=24  Identities=25%  Similarity=0.429  Sum_probs=20.3

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhh
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLK   37 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~   37 (180)
                      .....+++.|++|+|||++++.+.
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la   88 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMA   88 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHH
Confidence            445579999999999999997664

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.68  E-value=0.0012  Score=46.32  Aligned_cols=24  Identities=21%  Similarity=0.252  Sum_probs=20.6

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhc
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ..-.+++.|++|+|||++++.+..
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            345689999999999999998864

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.68  E-value=0.0011  Score=47.56  Aligned_cols=23  Identities=13%  Similarity=-0.021  Sum_probs=19.3

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhc
Q 030289           16 EMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ..-+++.|+||+|||+|++.+..
T Consensus        36 p~~lLl~GppGtGKT~la~aiA~   58 (293)
T 3t15_A           36 PLILGIWGGKGQGKSFQCELVFR   58 (293)
T ss_dssp             CSEEEEEECTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            44677889999999999998874

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.67  E-value=0.00091  Score=52.95  Aligned_cols=25  Identities=36%  Similarity=0.275  Sum_probs=21.1

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      .=.++++|++|+|||||++.+.+-.
T Consensus       382 Gei~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          382 GEVIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3458899999999999999888644

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.65  E-value=0.0019  Score=47.56  Aligned_cols=24  Identities=29%  Similarity=0.416  Sum_probs=20.2

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhc
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ...+|+++|++|+||||+...|..
T Consensus        23 ~~~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A           23 YRVCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHH
Confidence            345799999999999999977653

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=96.65  E-value=0.0011  Score=45.07  Aligned_cols=20  Identities=25%  Similarity=0.506  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCChHHHHHHhh
Q 030289           18 RILMVGLDAAGKTTILYKLK   37 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~   37 (180)
                      -.+|+|++|+||||++.++.
T Consensus        25 ~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           25 INLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEcCCCCCHHHHHHHHH
Confidence            35789999999999998874

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.64  E-value=0.0018  Score=47.46  Aligned_cols=35  Identities=23%  Similarity=0.306  Sum_probs=24.4

Q ss_pred             HHHHhhhcccC-ccEEEEEcCCCCChHHHHHHhhcC
Q 030289            5 ISRLKMLFARK-EMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus         5 ~~~~~~~~~~~-~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      +..+....... .-.+++.|++|+|||++++.+...
T Consensus        46 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           46 VTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             HHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            34444444333 134999999999999999888743

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.62  E-value=0.0013  Score=47.37  Aligned_cols=26  Identities=19%  Similarity=0.231  Sum_probs=21.7

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      ...-.+++.|++|+|||+|++.+...
T Consensus        47 ~~~~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           47 TPSKGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             CCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCcCHHHHHHHHHHH
Confidence            34557999999999999999988753

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.61  E-value=0.0014  Score=47.54  Aligned_cols=24  Identities=33%  Similarity=0.311  Sum_probs=20.3

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      ..-|+|+||+|||||||..+|...
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHh
Confidence            345889999999999999998643

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.60  E-value=0.0011  Score=48.03  Aligned_cols=23  Identities=39%  Similarity=0.505  Sum_probs=19.3

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhc
Q 030289           16 EMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      .--|+++|++|+||||++..|..
T Consensus       104 ~~vi~ivG~~GsGKTTl~~~LA~  126 (306)
T 1vma_A          104 PFVIMVVGVNGTGKTTSCGKLAK  126 (306)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHH
Confidence            34578999999999999988853

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.58  E-value=0.0011  Score=52.38  Aligned_cols=22  Identities=32%  Similarity=0.466  Sum_probs=19.7

Q ss_pred             EEEEcCCCCChHHHHHHhhcCC
Q 030289           19 ILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        19 i~i~G~~~~GKStli~~l~~~~   40 (180)
                      ++++|++|+|||||++.+.+-.
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~  402 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGAL  402 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCCcHHHHHHHHhcCC
Confidence            7899999999999999888654

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.57  E-value=0.0015  Score=48.30  Aligned_cols=25  Identities=28%  Similarity=0.361  Sum_probs=21.5

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ...-.++|.|++|+|||+|++.+..
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~   66 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLR   66 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHH
Confidence            4456899999999999999988874

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.55  E-value=0.0013  Score=45.52  Aligned_cols=25  Identities=36%  Similarity=0.304  Sum_probs=18.6

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ++..-|+|-|++||||||+++.|..
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~~~l~~   47 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHLQWFCD   47 (227)
T ss_dssp             CCCCEEEEECCC---CHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999988863

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.54  E-value=0.0012  Score=48.00  Aligned_cols=23  Identities=26%  Similarity=0.229  Sum_probs=20.1

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhc
Q 030289           16 EMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      .-.+++.|++|+|||+|++.+..
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~   59 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGN   59 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHH
Confidence            35699999999999999988874

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.53  E-value=0.0013  Score=45.55  Aligned_cols=22  Identities=23%  Similarity=0.274  Sum_probs=18.6

Q ss_pred             ccEEEEEcCCCCChHHHHHHhh
Q 030289           16 EMRILMVGLDAAGKTTILYKLK   37 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~   37 (180)
                      .--++++|++|+|||||+..+.
T Consensus        23 G~~~~i~G~~GsGKTtl~~~~~   44 (247)
T 2dr3_A           23 RNVVLLSGGPGTGKTIFSQQFL   44 (247)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4468899999999999987775

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=96.51  E-value=0.0012  Score=48.61  Aligned_cols=25  Identities=20%  Similarity=0.157  Sum_probs=21.1

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcC
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      ..--+.|+|++|+|||||+..++..
T Consensus       130 ~G~i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          130 TQAITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4456789999999999999998754

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.51  E-value=0.0018  Score=48.88  Aligned_cols=24  Identities=25%  Similarity=0.412  Sum_probs=20.7

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhc
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ...-|+++|++||||||+.++|..
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            455688999999999999999874

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.50  E-value=0.0013  Score=49.73  Aligned_cols=24  Identities=21%  Similarity=0.306  Sum_probs=20.6

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhc
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ..--+++.||||+|||+|++++.+
T Consensus       205 ~prGiLL~GPPGtGKT~lakAiA~  228 (428)
T 4b4t_K          205 PPRGVLLYGPPGTGKTMLVKAVAN  228 (428)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            344599999999999999999874

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.50  E-value=0.0018  Score=47.12  Aligned_cols=22  Identities=36%  Similarity=0.446  Sum_probs=19.5

Q ss_pred             cEEEEEcCCCCChHHHHHHhhc
Q 030289           17 MRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ..|+|+|++|||||||...|..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999988864

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.50  E-value=0.0013  Score=48.69  Aligned_cols=23  Identities=26%  Similarity=0.388  Sum_probs=20.5

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhc
Q 030289           16 EMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      .-.++|.|++|+|||||++.+..
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~   67 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLS   67 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999998875

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=96.48  E-value=0.0016  Score=46.77  Aligned_cols=24  Identities=38%  Similarity=0.504  Sum_probs=20.8

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhc
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ....+++.|++|+|||++++.+..
T Consensus        49 ~~~~vll~G~~GtGKT~la~~la~   72 (310)
T 1ofh_A           49 TPKNILMIGPTGVGKTEIARRLAK   72 (310)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999988864

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.47  E-value=0.0015  Score=48.38  Aligned_cols=22  Identities=36%  Similarity=0.341  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChHHHHHHhhcC
Q 030289           18 RILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~   39 (180)
                      .++|.|++|+|||||++.+...
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999988743

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=96.46  E-value=0.0019  Score=49.59  Aligned_cols=25  Identities=28%  Similarity=0.359  Sum_probs=21.6

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ...-+++++|++|+|||++++.+..
T Consensus       199 ~~~~~~LL~G~pG~GKT~la~~la~  223 (468)
T 3pxg_A          199 RTKNNPVLIGEPGVGKTAIAEGLAQ  223 (468)
T ss_dssp             SSSCEEEEESCTTTTTHHHHHHHHH
T ss_pred             cCCCCeEEECCCCCCHHHHHHHHHH
Confidence            4566899999999999999988864

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.46  E-value=0.0016  Score=47.72  Aligned_cols=22  Identities=32%  Similarity=0.480  Sum_probs=19.4

Q ss_pred             cEEEEEcCCCCChHHHHHHhhc
Q 030289           17 MRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~   38 (180)
                      .-|+|+|++|||||||..+|..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            4689999999999999988864

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.45  E-value=0.0027  Score=48.13  Aligned_cols=25  Identities=28%  Similarity=0.266  Sum_probs=21.8

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ...--|++.||||+|||+|++++.+
T Consensus       213 ~~prGvLLyGPPGTGKTllAkAiA~  237 (434)
T 4b4t_M          213 RAPKGALMYGPPGTGKTLLARACAA  237 (434)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCCCeeEEECcCCCCHHHHHHHHHH
Confidence            4456799999999999999999874

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.45  E-value=0.0019  Score=44.92  Aligned_cols=23  Identities=30%  Similarity=0.299  Sum_probs=20.1

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhc
Q 030289           16 EMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ...|+|.|..||||||+++.|..
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~   24 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            35689999999999999998864

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=96.44  E-value=0.00095  Score=52.21  Aligned_cols=26  Identities=31%  Similarity=0.540  Sum_probs=22.1

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      .+...++++|++|||||||.+.|.+.
T Consensus       367 ~~G~iI~LiG~sGSGKSTLar~La~~  392 (552)
T 3cr8_A          367 RQGFTVFFTGLSGAGKSTLARALAAR  392 (552)
T ss_dssp             GSCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred             ccceEEEEECCCCChHHHHHHHHHHh
Confidence            35678999999999999999888643

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.44  E-value=0.0021  Score=44.05  Aligned_cols=24  Identities=25%  Similarity=0.242  Sum_probs=20.6

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhh
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLK   37 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~   37 (180)
                      ++..-|+|-|++||||||+++.|.
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~   27 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLA   27 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHH
Confidence            456789999999999999998885

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.44  E-value=0.0022  Score=44.26  Aligned_cols=25  Identities=36%  Similarity=0.331  Sum_probs=21.3

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      .+..-|+|.|..||||||+++.|..
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~   43 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAE   43 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4567799999999999999988853

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=96.44  E-value=0.0022  Score=44.64  Aligned_cols=25  Identities=28%  Similarity=0.359  Sum_probs=21.0

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ++..-|+|.|++||||||+++.|..
T Consensus        25 ~~~~~i~~eG~~GsGKsT~~~~l~~   49 (236)
T 3lv8_A           25 MNAKFIVIEGLEGAGKSTAIQVVVE   49 (236)
T ss_dssp             -CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4567799999999999999988853

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=96.42  E-value=0.0018  Score=53.85  Aligned_cols=25  Identities=24%  Similarity=0.438  Sum_probs=21.5

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      .=.++++|++|+|||||++.+.++.
T Consensus       461 Ge~v~LiGpNGsGKSTLLk~LagG~  485 (986)
T 2iw3_A          461 ARRYGICGPNGCGKSTLMRAIANGQ  485 (986)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4468999999999999999998654

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.42  E-value=0.0016  Score=49.46  Aligned_cols=25  Identities=20%  Similarity=0.308  Sum_probs=21.8

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ...--|++.||||+|||+|++++.+
T Consensus       213 ~~prGvLL~GPPGtGKTllAkAiA~  237 (437)
T 4b4t_L          213 KPPKGVLLYGPPGTGKTLLAKAVAA  237 (437)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHH
Confidence            4456899999999999999999874

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=96.42  E-value=0.0027  Score=45.88  Aligned_cols=22  Identities=32%  Similarity=0.400  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChHHHHHHhhcC
Q 030289           18 RILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~   39 (180)
                      .+++.|++|+|||++++.+...
T Consensus        48 ~~ll~G~~G~GKT~la~~l~~~   69 (327)
T 1iqp_A           48 HLLFAGPPGVGKTTAALALARE   69 (327)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHH
Confidence            5999999999999999888743

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.40  E-value=0.0024  Score=46.71  Aligned_cols=23  Identities=17%  Similarity=0.356  Sum_probs=20.0

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcC
Q 030289           17 MRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      .-|+|+|++|||||||...|...
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~   63 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAH   63 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999988743

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=96.39  E-value=0.0022  Score=46.62  Aligned_cols=23  Identities=22%  Similarity=0.299  Sum_probs=20.4

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhc
Q 030289           16 EMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ...+++.|++|+|||+|++.+..
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~   73 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVAT   73 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHH
Confidence            45799999999999999998864

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.39  E-value=0.0021  Score=46.24  Aligned_cols=22  Identities=27%  Similarity=0.362  Sum_probs=19.6

Q ss_pred             cEEEEEcCCCCChHHHHHHhhc
Q 030289           17 MRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~   38 (180)
                      -.+++.|++|+|||++++.+..
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~   69 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAA   69 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            4799999999999999988864

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=96.38  E-value=0.0019  Score=47.45  Aligned_cols=18  Identities=28%  Similarity=0.658  Sum_probs=16.5

Q ss_pred             EEEcCCCCChHHHHHHhh
Q 030289           20 LMVGLDAAGKTTILYKLK   37 (180)
Q Consensus        20 ~i~G~~~~GKStli~~l~   37 (180)
                      +|+|++|+|||||+.+++
T Consensus        27 ~i~G~NGsGKS~lleAi~   44 (339)
T 3qkt_A           27 LIIGQNGSGKSSLLDAIL   44 (339)
T ss_dssp             EEECCTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            699999999999999874

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=96.36  E-value=0.0033  Score=46.40  Aligned_cols=22  Identities=27%  Similarity=0.425  Sum_probs=19.6

Q ss_pred             cEEEEEcCCCCChHHHHHHhhc
Q 030289           17 MRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~   38 (180)
                      -.++|.|++|+|||+++..+..
T Consensus        71 ~~vLl~GppGtGKT~la~~la~   92 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQ   92 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999988863

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=96.36  E-value=0.0023  Score=48.80  Aligned_cols=23  Identities=22%  Similarity=0.247  Sum_probs=20.1

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcC
Q 030289           17 MRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      ..++|.|++|+|||||++.+...
T Consensus        51 ~~vLL~GppGtGKTtlAr~ia~~   73 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVIARY   73 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Confidence            37999999999999999888743

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.35  E-value=0.0024  Score=46.48  Aligned_cols=23  Identities=22%  Similarity=0.251  Sum_probs=20.5

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhc
Q 030289           16 EMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      .-.+++.|++|+|||+|++.+..
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~   67 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVAT   67 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHH
T ss_pred             CceEEEECCCCccHHHHHHHHHH
Confidence            45799999999999999998875

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.33  E-value=0.0016  Score=47.38  Aligned_cols=20  Identities=30%  Similarity=0.527  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCChHHHHHHhh
Q 030289           18 RILMVGLDAAGKTTILYKLK   37 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~   37 (180)
                      -.+|+|++|+|||||+..+.
T Consensus        26 ~~~i~G~NGsGKS~ll~ai~   45 (322)
T 1e69_A           26 VTAIVGPNGSGKSNIIDAIK   45 (322)
T ss_dssp             EEEEECCTTTCSTHHHHHHH
T ss_pred             cEEEECCCCCcHHHHHHHHH
Confidence            56799999999999999986

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=96.33  E-value=0.0015  Score=52.46  Aligned_cols=20  Identities=20%  Similarity=0.504  Sum_probs=17.4

Q ss_pred             cEEEEEcCCCCChHHHHHHh
Q 030289           17 MRILMVGLDAAGKTTILYKL   36 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l   36 (180)
                      =.++|+|++|||||||++.+
T Consensus       349 e~vaIiGpnGsGKSTLl~~i  368 (670)
T 3ux8_A          349 TFVAVTGVSGSGKSTLVNEV  368 (670)
T ss_dssp             SEEEEECSTTSSHHHHHTTT
T ss_pred             CEEEEEeeCCCCHHHHHHHH
Confidence            35789999999999999764

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.32  E-value=0.0019  Score=48.42  Aligned_cols=25  Identities=16%  Similarity=0.271  Sum_probs=21.7

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ...--|++.||||+|||.|++++.+
T Consensus       180 ~~prGvLL~GPPGTGKTllAkAiA~  204 (405)
T 4b4t_J          180 AQPKGVILYGPPGTGKTLLARAVAH  204 (405)
T ss_dssp             CCCCCEEEESCSSSSHHHHHHHHHH
T ss_pred             CCCCceEEeCCCCCCHHHHHHHHHH
Confidence            4456799999999999999999874

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.32  E-value=0.0023  Score=42.22  Aligned_cols=25  Identities=24%  Similarity=0.340  Sum_probs=21.0

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcC
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      ...=++|.|++|+||||+.-.|...
T Consensus        15 ~G~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           15 DKMGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence            3456899999999999999888754

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=96.32  E-value=0.0025  Score=44.88  Aligned_cols=27  Identities=22%  Similarity=0.336  Sum_probs=22.6

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      .....++|.|++|+|||++++.+....
T Consensus        27 ~~~~~vll~G~~GtGKt~la~~i~~~~   53 (265)
T 2bjv_A           27 PLDKPVLIIGERGTGKELIASRLHYLS   53 (265)
T ss_dssp             TSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred             CCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence            345789999999999999998887543

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=96.32  E-value=0.0031  Score=45.97  Aligned_cols=33  Identities=18%  Similarity=0.297  Sum_probs=24.2

Q ss_pred             HHHhhhcccCccEEEEEcCCCCChHHHHHHhhcC
Q 030289            6 SRLKMLFARKEMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus         6 ~~~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      ..+.+.+... --++|.|+.|+|||||++.+...
T Consensus        22 ~~L~~~l~~~-~~v~i~G~~G~GKT~Ll~~~~~~   54 (350)
T 2qen_A           22 RKLEESLENY-PLTLLLGIRRVGKSSLLRAFLNE   54 (350)
T ss_dssp             HHHHHHHHHC-SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHhcC-CeEEEECCCcCCHHHHHHHHHHH
Confidence            3444444332 57889999999999999998743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	180
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	4e-46
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	4e-40
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	3e-38
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-36
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	6e-36
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	9e-36
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	5e-34
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	2e-32
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	3e-32
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	6e-30
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	3e-28
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	9e-27
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	5e-25
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	2e-24
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	3e-24
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	4e-24
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	4e-24
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	3e-22
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	4e-21
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	4e-19
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	1e-18
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	3e-18
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	3e-18
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	6e-18
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	6e-16
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	3e-15
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	5e-15
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	2e-14
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	7e-13
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	2e-12
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	5e-12
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	3e-11
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	9e-11
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	2e-10
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	5e-10
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	5e-10
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	9e-10
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	5e-09
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	1e-08
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	5e-08
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	1e-07
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	3e-07
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	3e-07
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	4e-07
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	7e-07
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	8e-07
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	8e-07
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	1e-06
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	2e-06
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	2e-05
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	1e-04
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	3e-04
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	4e-04
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	4e-04
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	5e-04
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	5e-04

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score =  147 bits (371), Expect = 4e-46
 Identities = 118/169 (69%), Positives = 141/169 (83%)

Query: 8   LKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDV 67
           L  +F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKNV F VWDV
Sbjct: 4   LSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDV 63

Query: 68  GGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQ 127
           GGQDKIRPLWRHY+  T GLIFVVD  DR+RI EA+ ELHR++++ E+R+A++L+FANKQ
Sbjct: 64  GGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQ 123

Query: 128 DLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
           DLP+AM   E+ +KLGL  +R R WY+Q +CATSG GLYEGL WL+SN 
Sbjct: 124 DLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score =  132 bits (332), Expect = 4e-40
 Identities = 99/180 (55%), Positives = 131/180 (72%), Gaps = 2/180 (1%)

Query: 2   GMVISRL--KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 59
           G + S +  K+  + KE+RIL++GLD AGKTTILY+L++GE+VTT PTIGFNVET+ YKN
Sbjct: 1   GNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKN 60

Query: 60  VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV 119
           +   VWD+GGQ  IRP WR Y+ +T  +IFVVDS D++R+  A  ELH ML E+EL++A 
Sbjct: 61  LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAA 120

Query: 120 LLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
           LLVFANKQD P A+S SEV+ +L L  L+ R W I A+ A  G+G+ EGLDWL   +  +
Sbjct: 121 LLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 180

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score =  127 bits (319), Expect = 3e-38
 Identities = 83/175 (47%), Positives = 126/175 (72%)

Query: 2   GMVISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVS 61
           G++ +R+  LF  +E ++++VGLD AGKTTILY+  + E+V T PTIG NVE +   N  
Sbjct: 1   GILFTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTR 60

Query: 62  FTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLL 121
           F +WD+GGQ+ +R  W  Y+ NT  +I VVDS DRERI   ++EL++ML+ ++LR+A LL
Sbjct: 61  FLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLL 120

Query: 122 VFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
           +FANKQD+   M+V+E++  L L S++  +W+IQA CA +G+GL +GL+W+ S +
Sbjct: 121 IFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score =  122 bits (307), Expect = 1e-36
 Identities = 140/160 (87%), Positives = 151/160 (94%)

Query: 17  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPL 76
           MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN+SFTVWDVGGQDKIRPL
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 60

Query: 77  WRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVS 136
           WRHYFQNT GLIFVVDSNDRER+ EA++EL RML+EDELR+AVLLVFANKQDLPNAM+ +
Sbjct: 61  WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAA 120

Query: 137 EVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
           E+TDKLGLHSLR R WYIQA CATSG GLYEGLDWLS+ +
Sbjct: 121 EITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score =  121 bits (303), Expect = 6e-36
 Identities = 78/165 (47%), Positives = 115/165 (69%)

Query: 15  KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIR 74
           +E+R+LM+GLD AGKTTIL K    ++ T  PT+GFN++T+E++     +WDVGGQ  +R
Sbjct: 1   RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLR 60

Query: 75  PLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS 134
             WR+YF++T GLI+VVDS DR+R+ + + EL  +L E+ L  A LL+FANKQDLP A+S
Sbjct: 61  SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS 120

Query: 135 VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
            + + + L L S+R   W IQ   A +G+ L  G+DWL  ++S++
Sbjct: 121 CNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 165

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score =  120 bits (302), Expect = 9e-36
 Identities = 79/173 (45%), Positives = 116/173 (67%), Gaps = 1/173 (0%)

Query: 4   VISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFT 63
           ++ +LK     +E+RIL++GLD AGKTT+L +L   +I    PT GFN+++V+ +     
Sbjct: 5   ILRKLKSA-PDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLN 63

Query: 64  VWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVF 123
           VWD+GGQ KIRP WR YF+NT  LI+V+DS DR+R  E   EL  +L E++L    +L+F
Sbjct: 64  VWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIF 123

Query: 124 ANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
           ANKQDL  A   SE+ + L LH++R R W IQ+  A +G+G+ +G++W+  NV
Sbjct: 124 ANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  117 bits (295), Expect = 5e-34
 Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 13/137 (9%)

Query: 14  RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKI 73
           R   R+L++G   +GK+TI+ ++++  +V    T G      +   V+F ++DVGGQ   
Sbjct: 4   RATHRLLLLGAGESGKSTIVKQMRILHVV---LTSGIFETKFQVDKVNFHMFDVGGQRDE 60

Query: 74  RPLWRHYFQNTHGLIFVV----------DSNDRERIGEAKDELHRMLSEDELREAVLLVF 123
           R  W   F +   +IFVV          + N   R+ EA +    + +   LR   +++F
Sbjct: 61  RRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILF 120

Query: 124 ANKQDLPNAMSVSEVTD 140
            NKQDL     ++  + 
Sbjct: 121 LNKQDLLAEKVLAGKSK 137

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  112 bits (279), Expect = 2e-32
 Identities = 58/163 (35%), Positives = 87/163 (53%), Gaps = 7/163 (4%)

Query: 18  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLW 77
           ++L +GLD AGKTT+L+ LK   + T  PT     E +   N+ FT +D+GG  + R LW
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLW 61

Query: 78  RHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSE 137
           + YF   +G++F+VD+ D ER  EA+ EL  + +  EL++   ++  NK D PNA+S +E
Sbjct: 62  KDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAE 121

Query: 138 VTDKLGLHSL-------RQRRWYIQAACATSGQGLYEGLDWLS 173
           +   LGL +         QR   +         G  E   WLS
Sbjct: 122 LRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 164

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score =  112 bits (279), Expect = 3e-32
 Identities = 50/180 (27%), Positives = 93/180 (51%), Gaps = 12/180 (6%)

Query: 9   KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVG 68
            +   +K  +++ +GLD AGKTT+L+ LK   +   +PT+    E +    ++FT +D+G
Sbjct: 6   FLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLG 65

Query: 69  GQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQD 128
           G  + R +W++Y    +G++F+VD  D ER+ E+K+EL  +++++ +    +L+  NK D
Sbjct: 66  GHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKID 125

Query: 129 LPNAMSVSEVTDKLGLH------------SLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
            P A+S   + +  GL+             L  R   +        QG  EG  W++  +
Sbjct: 126 RPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  106 bits (266), Expect = 6e-30
 Identities = 35/191 (18%), Positives = 80/191 (41%), Gaps = 34/191 (17%)

Query: 15  KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIR 74
           +E+++L++G   +GK+T + ++++    + +PT G      + ++V F + DVGGQ   R
Sbjct: 1   RELKLLLLGTGESGKSTFIKQMRIIH-GSGVPTTGIIEYPFDLQSVIFRMVDVGGQRSER 59

Query: 75  PLWRHYFQNTHGLIFVVDSNDRERIG----------EAKDELHRMLSEDELREAVLLVFA 124
             W H F+N   ++F+V  ++ +++           E+K     +++    + + +++F 
Sbjct: 60  RKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFL 119

Query: 125 NKQDLPNAMSVSEVTDK-----------------------LGLHSLRQRRWYIQAACATS 161
           NK+DL     +                             + L+    +  Y    CAT 
Sbjct: 120 NKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATD 179

Query: 162 GQGLYEGLDWL 172
            + +      +
Sbjct: 180 TENIRFVFAAV 190

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score =  101 bits (251), Expect = 3e-28
 Identities = 52/163 (31%), Positives = 93/163 (57%), Gaps = 1/163 (0%)

Query: 15  KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNVSFTVWDVGGQDKI 73
           +EM + +VGL  +GKTT +  +  G+     IPT+GFN+  +   NV+  +WD+GGQ + 
Sbjct: 1   EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRF 60

Query: 74  RPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM 133
           R +W  Y +    ++++VD+ D+E+I  +K+ELH +L + +L+   +LV  NK+DLP A+
Sbjct: 61  RSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL 120

Query: 134 SVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
              E+ +K+ L +++ R     +        +   L WL  + 
Sbjct: 121 DEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 163

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 97.9 bits (242), Expect = 9e-27
 Identities = 97/165 (58%), Positives = 127/165 (76%)

Query: 15  KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIR 74
           +EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+GG   IR
Sbjct: 4   REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIR 63

Query: 75  PLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS 134
           P WR Y+ NT  +I+VVDS DR+RIG +K EL  ML E+ELR+A+L+VFANKQD+  AM+
Sbjct: 64  PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT 123

Query: 135 VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
            SE+ + LGL +L+ R+W I    AT G GL E ++WL   + ++
Sbjct: 124 SSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 168

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 93.8 bits (232), Expect = 5e-25
 Identities = 34/138 (24%), Positives = 65/138 (47%), Gaps = 13/138 (9%)

Query: 15  KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIR 74
           + ++IL++G   +GK+T L ++++       PT G +    E KNV F + DVGGQ   R
Sbjct: 1   RLVKILLLGAGESGKSTFLKQMRIIH--GQDPTKGIHEYDFEIKNVPFKMVDVGGQRSER 58

Query: 75  PLWRHYFQNTHGLIFVVDSNDRE----------RIGEAKDELHRMLSEDELREAVLLVFA 124
             W   F +   ++F+V S++ +          R+ E+ +    +++        +++F 
Sbjct: 59  KRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFL 118

Query: 125 NKQ-DLPNAMSVSEVTDK 141
           NK   L   + V  + D 
Sbjct: 119 NKTDLLEEKVQVVSIKDY 136

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 91.4 bits (226), Expect = 2e-24
 Identities = 37/168 (22%), Positives = 71/168 (42%), Gaps = 10/168 (5%)

Query: 17  MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNVSFTVWDVGGQD 71
           M+IL++G    GK+ +L +    +   + I TIG + +     +  K V   +WD  GQ+
Sbjct: 3   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 62

Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131
           + R +   Y++   G+I V D  D         +  + ++E    EA LL+  NK D+  
Sbjct: 63  RFRTITTAYYRGAMGIILVYDITDERTF-TNIKQWFKTVNEHANDEAQLLLVGNKSDMET 121

Query: 132 AMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
            +  ++     G    ++       + A +   + E    L+  +  K
Sbjct: 122 RVVTADQ----GEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 165

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 91.6 bits (226), Expect = 3e-24
 Identities = 34/191 (17%), Positives = 69/191 (36%), Gaps = 37/191 (19%)

Query: 15  KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIR 74
           +E+++L++G   +GK+TI+ ++K+          G       +K++ F ++DVGGQ   R
Sbjct: 1   REVKLLLLGAGESGKSTIVKQMKIIH----EAGTGIVETHFTFKDLHFKMFDVGGQRSER 56

Query: 75  PLWRHYFQNTHGLIFVVDSNDRERIGEAK----------DELHRMLSEDELREAVLLVFA 124
             W H F+    +IF V  +D + +                   + +     +  +++F 
Sbjct: 57  KKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFL 116

Query: 125 N-KQDLPNAMSVSEVTDKLGLH----------------------SLRQRRWYIQAACATS 161
           N K      +  S +T     +                          +  Y    CAT 
Sbjct: 117 NKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATD 176

Query: 162 GQGLYEGLDWL 172
            + +    D +
Sbjct: 177 TKNVQFVFDAV 187

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 92.0 bits (227), Expect = 4e-24
 Identities = 33/152 (21%), Positives = 60/152 (39%), Gaps = 7/152 (4%)

Query: 19  ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN----VSFTVWDVGGQDKIR 74
           +L VGL  +GKT +  +L  G+   T  +I  +    +  N        +   G +    
Sbjct: 3   VLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 62

Query: 75  PLWRHYFQNTHGLIFVVDSNDRER-IGEAKDELHRMLSEDELREAV--LLVFANKQDLPN 131
            L   +  +   ++FVVDS   +R + +  + L+++L +    +    LL+  NKQD+  
Sbjct: 63  QLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 122

Query: 132 AMSVSEVTDKLGLHSLRQRRWYIQAACATSGQ 163
           A S   +  +L       R     A       
Sbjct: 123 AKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS 154

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 91.0 bits (225), Expect = 4e-24
 Identities = 30/168 (17%), Positives = 62/168 (36%), Gaps = 9/168 (5%)

Query: 17  MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEY--KNVSFTVWDVGGQD 71
            ++L++G    GKT +L++        T I TIG  F + T+E   K +   +WD  GQ+
Sbjct: 7   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66

Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131
           + R +   Y++   G++ V D  + +     ++ +  +          +++         
Sbjct: 67  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 126

Query: 132 AMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
                E     G               A +   +      L+ ++ AK
Sbjct: 127 RQVSKER----GEKLALDYGIKFMETSAKANINVENAFFTLARDIKAK 170

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.1 bits (212), Expect = 3e-22
 Identities = 34/166 (20%), Positives = 65/166 (39%), Gaps = 9/166 (5%)

Query: 16  EMRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIGFNVETVEYKNVSFTVWDVGGQ 70
            ++IL++G    GK+++L +         +             +V+       +WD  GQ
Sbjct: 7   TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ 66

Query: 71  DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP 130
           ++ R L   Y++   G+I V D   R+   +  + L+ + +     + V ++  NK D  
Sbjct: 67  ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE 126

Query: 131 NAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
           N     EV    GL   R+       A A +  G+    + L   +
Sbjct: 127 NR----EVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKI 168

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 83.8 bits (206), Expect = 4e-21
 Identities = 31/165 (18%), Positives = 60/165 (36%), Gaps = 9/165 (5%)

Query: 17  MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNVSFTVWDVGGQD 71
            ++L++G    GK+ +L +          I TIG + +     ++ K V   +WD  GQ+
Sbjct: 7   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 66

Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131
           + R +   Y++ +HG+I V D  D+E     K  L  +          LLV         
Sbjct: 67  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 126

Query: 132 AMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
            +   +V            +       A     + +    ++  +
Sbjct: 127 RVVEYDVAK----EFADANKMPFLETSALDSTNVEDAFLTMARQI 167

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.0 bits (191), Expect = 4e-19
 Identities = 27/165 (16%), Positives = 55/165 (33%), Gaps = 9/165 (5%)

Query: 17  MRILMVGLDAAGKTTILYKLKLGEIVTTIPT-----IGFNVETVEYKNVSFTVWDVGGQD 71
            + L++G    GK+ +L++    +             G  +  V  K V   +WD  GQ+
Sbjct: 6   FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 65

Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131
           + R + R Y++   G + V D   RE      + L            ++L    K    +
Sbjct: 66  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 125

Query: 132 AMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
                    +      ++         A +G+ + E     +  +
Sbjct: 126 REVTFLEASRF----AQENELMFLETSALTGENVEEAFVQCARKI 166

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.2 bits (189), Expect = 1e-18
 Identities = 33/178 (18%), Positives = 71/178 (39%), Gaps = 18/178 (10%)

Query: 17  MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--------------FNVETVEYKNVS 61
           +++L +G    GKTT LY+    +     I T+G               N  + +   V 
Sbjct: 6   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65

Query: 62  FTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLL 121
             +WD  GQ++ R L   +F++  G + + D   ++     ++ + ++ +        ++
Sbjct: 66  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 125

Query: 122 VFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
           +  NK DLP+   V+E           +         A +GQ + + ++ L   +  +
Sbjct: 126 LIGNKADLPDQREVNERQ---ARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKR 180

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 75.3 bits (184), Expect = 3e-18
 Identities = 29/168 (17%), Positives = 56/168 (33%), Gaps = 9/168 (5%)

Query: 17  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET-----VEYKNVSFTVWDVGGQD 71
            +IL++G  + GKT+ L++           +               K +   +WD  GQ+
Sbjct: 6   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65

Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131
           + R +   Y++   G I + D  + E     +D   ++ +       VLLV         
Sbjct: 66  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 125

Query: 132 AMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
            +  SE              +    A A     + +  + L   +  K
Sbjct: 126 RVVSSERGR----QLADHLGFEFFEASAKDNINVKQTFERLVDVICEK 169

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.3 bits (184), Expect = 3e-18
 Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 10/166 (6%)

Query: 17  MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVET----VEYKNVSFTVWDVGGQ 70
            ++++VG    GKT +L + K G  +  T I T+G +       V+   V   +WD  GQ
Sbjct: 7   FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 66

Query: 71  DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP 130
           ++ R +   Y+++ H L+ + D  ++      +  L  +    +   A++L+        
Sbjct: 67  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 126

Query: 131 NAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
             +    V  + G    ++         A +G  +      ++  +
Sbjct: 127 ERV----VKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 168

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.4 bits (184), Expect = 6e-18
 Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 9/133 (6%)

Query: 18  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLW 77
            I++ G   +GKT++L  L    +  T+ +    +   +Y     T+ D  G  K+R   
Sbjct: 5   SIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE-PLSAADYDGSGVTLVDFPGHVKLRYKL 63

Query: 78  RHYFQ-----NTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREA---VLLVFANKQDL 129
             Y +         +  V  + D +++    + L  +LS  E        +L+  NK +L
Sbjct: 64  SDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL 123

Query: 130 PNAMSVSEVTDKL 142
             A   S++ D L
Sbjct: 124 FTARPPSKIKDAL 136

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.7 bits (169), Expect = 6e-16
 Identities = 31/168 (18%), Positives = 69/168 (41%), Gaps = 6/168 (3%)

Query: 17  MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEY----KNVSFTVWDVGGQD 71
           ++++++G  A GK++I+ +    +      PTIG    T         V F +WD  GQ+
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131
           +   L   Y++N    + V D    +   +A+  +  +  E   ++ ++ +  NK D+  
Sbjct: 64  RFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKEL-HEQASKDIIIALVGNKIDMLQ 122

Query: 132 AMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
                +V  + G     ++        A +G+ + +    +   +  K
Sbjct: 123 EGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.2 bits (163), Expect = 3e-15
 Identities = 27/165 (16%), Positives = 59/165 (35%), Gaps = 9/165 (5%)

Query: 17  MRILMVGLDAAGKTTILYKLKLGEIVTTIPT-----IGFNVETVEYKNVSFTVWDVGGQD 71
            + +++G    GK+ +L++    + +   P       G  +  V  + +   +WD  GQ+
Sbjct: 5   FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 64

Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131
           + R + R Y++   G + V D   R                      V+++  NK DL  
Sbjct: 65  RFRAVTRSYYRGAAGALMVYDITRRSTY-NHLSSWLTDARNLTNPNTVIILIGNKADLEA 123

Query: 132 AMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
              V+    +       +       A A +G+ + +     +  +
Sbjct: 124 QRDVTY---EEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.2 bits (163), Expect = 5e-15
 Identities = 28/165 (16%), Positives = 60/165 (36%), Gaps = 9/165 (5%)

Query: 17  MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG----FNVETVEYKNVSFTVWDVGGQD 71
            +++++G    GK+ +L +    E  + +  TIG         V+ K +   +WD  GQ+
Sbjct: 5   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 64

Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131
           + R +   Y++   G + V D          +  L  +    +    V+++  NK DL +
Sbjct: 65  RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGNKSDLRH 123

Query: 132 AMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
             +V             +         A     + E    + + +
Sbjct: 124 LRAVPT---DEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 165

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (158), Expect = 2e-14
 Identities = 28/161 (17%), Positives = 57/161 (35%), Gaps = 9/161 (5%)

Query: 17  MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEY--KNVSFTVWDVGGQD 71
            +I+++G    GKT ++ +   G           + F ++TVE   + V   +WD  GQ+
Sbjct: 6   FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 65

Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131
           + R + + Y+++ + LI   D    E      + L  +      +   +LV         
Sbjct: 66  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 125

Query: 132 AMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWL 172
                 V+ +        +  Y     A     + +    L
Sbjct: 126 RE----VSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDL 162

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (148), Expect = 7e-13
 Identities = 27/168 (16%), Positives = 53/168 (31%), Gaps = 9/168 (5%)

Query: 17  MRILMVGLDAAGKTTILYKLKLGE-----IVTTIPTIGFNVETVEYKNVSFTVWDVGGQD 71
            + +++G    GK+ +L +           +T     G  +  ++ K +   +WD  GQ+
Sbjct: 4   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 63

Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131
             R + R Y++   G + V D   RE        L            ++L+         
Sbjct: 64  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR 123

Query: 132 AMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
                E     G    R+         A +   + E     +  +  K
Sbjct: 124 RDVKREE----GEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRK 167

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (144), Expect = 2e-12
 Identities = 24/167 (14%), Positives = 58/167 (34%), Gaps = 7/167 (4%)

Query: 15  KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET----VEYKNVSFTVWDVGGQ 70
           +E +++++G    GK+ +  +   G  +        +       V+       + D  G 
Sbjct: 2   REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGT 61

Query: 71  DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP 130
           ++   +   Y +N  G I V    +++   + K    +++      +  +++  NK DL 
Sbjct: 62  EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121

Query: 131 NAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVS 177
           +   VS      G     +         A S   + E    +   ++
Sbjct: 122 SEREVSS---SEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN 165

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.9 bits (141), Expect = 5e-12
 Identities = 28/166 (16%), Positives = 62/166 (37%), Gaps = 9/166 (5%)

Query: 16  EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET-----VEYKNVSFTVWDVGGQ 70
           + +++++G  A GK++++ +   G+      +            ++   V F +WD  GQ
Sbjct: 6   QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65

Query: 71  DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP 130
           ++   L   Y++     I V D  + E    AK+ +  +  +      V+ +  NK DL 
Sbjct: 66  ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKADLA 124

Query: 131 NAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
           N  +V     +                 A +   + E    ++  +
Sbjct: 125 NKRAVDFQEAQ---SYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.6 bits (135), Expect = 3e-11
 Identities = 28/125 (22%), Positives = 54/125 (43%), Gaps = 6/125 (4%)

Query: 15  KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNVSFTVWDVGG 69
           +  +I+++G    GKT + Y+   G     T  TIG +       ++ + +   +WD  G
Sbjct: 1   RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAG 60

Query: 70  QDKIRPLWR-HYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQD 128
           Q++ R     HY++N H ++FV D  +          +          +   ++  NK D
Sbjct: 61  QERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCD 120

Query: 129 LPNAM 133
           L +A+
Sbjct: 121 LRSAI 125

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (133), Expect = 9e-11
 Identities = 24/165 (14%), Positives = 56/165 (33%), Gaps = 9/165 (5%)

Query: 17  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-----KNVSFTVWDVGGQD 71
            +++++G    GKT+++ +    +      T        +      K V+  +WD  GQ+
Sbjct: 4   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 63

Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131
           +   L   Y+++++G I V D  D +   + K+ +  +         + +V         
Sbjct: 64  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 123

Query: 132 AMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
                +  +                  A   +G+ E    L   +
Sbjct: 124 RHVSIQEAESY----AESVGAKHYHTSAKQNKGIEELFLDLCKRM 164

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 54.6 bits (130), Expect = 2e-10
 Identities = 31/166 (18%), Positives = 59/166 (35%), Gaps = 7/166 (4%)

Query: 18  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN----VETVEYKNVSFTVWDVGGQDKI 73
           +++MVG    GK+ +  +    E V        +       ++ + V   + D  GQ+  
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65

Query: 74  RPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM 133
             +  +YF++  G + V    + E      D   ++L   E      L+  NK DL +  
Sbjct: 66  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR 125

Query: 134 SVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
            VS    K   +   Q         A +   + +    L   + A+
Sbjct: 126 QVSVEEAK---NRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (128), Expect = 5e-10
 Identities = 23/163 (14%), Positives = 53/163 (32%), Gaps = 11/163 (6%)

Query: 18  RILMVGLDAAGKTTILYKLKLGE-----IVTTIPTIGFNVETVEYKNVSFTVWDVGGQDK 72
           +++++G    GK++++ +    +       T           V+   V+  +WD  GQ++
Sbjct: 8   KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 67

Query: 73  IRPLWRHYFQNTHGLI---FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDL 129
            R L   +++ +   +    V DS   + +   K E        E      ++  NK D+
Sbjct: 68  FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI 127

Query: 130 PNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWL 172
                 +E              +      A     +    +  
Sbjct: 128 SERQVSTEEAQAW---CRDNGDYPYFETSAKDATNVAAAFEEA 167

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.9 bits (128), Expect = 5e-10
 Identities = 22/165 (13%), Positives = 55/165 (33%), Gaps = 5/165 (3%)

Query: 17  MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG----FNVETVEYKNVSFTVWDVGGQD 71
           ++++++G    GKT+++ +    +       TIG         V+ + V+  +WD  GQ+
Sbjct: 3   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62

Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131
           + + L   +++     + V D                 L +   R+     F    +  +
Sbjct: 63  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 122

Query: 132 AMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
             +    T +       +         A     + +    ++ N 
Sbjct: 123 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 167

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.7 bits (125), Expect = 9e-10
 Identities = 23/166 (13%), Positives = 51/166 (30%), Gaps = 9/166 (5%)

Query: 13  ARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIGFNVETVEYKNVSFTVWDV 67
           A +E+++ ++G    GK++I+++         I      +        + +   F +WD 
Sbjct: 1   ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDT 60

Query: 68  GGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQ 127
            G ++ R L   Y++ +   I V D    E     K+ +  +         V +      
Sbjct: 61  AGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCD 120

Query: 128 DLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLS 173
                  +                       A +   + E    +S
Sbjct: 121 LTDVREVMERDAKDYA----DSIHAIFVETSAKNAININELFIEIS 162

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 5e-09
 Identities = 26/164 (15%), Positives = 65/164 (39%), Gaps = 9/164 (5%)

Query: 18  RILMVGLDAAGKTTILYKLKLGEIV-----TTIPTIGFNVETVEYKNVSFTVWDVGGQDK 72
           +++ +G  + GKT+++ +            T           +E + +   +WD  GQ++
Sbjct: 2   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 61

Query: 73  IRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA 132
            R L   Y +++   + V D  +     +    +  + +E      ++LV  NK DL + 
Sbjct: 62  FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLV-GNKTDLADK 120

Query: 133 MSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
               +V+ + G    ++         A +G  + +    +++ +
Sbjct: 121 R---QVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.7 bits (117), Expect = 1e-08
 Identities = 24/161 (14%), Positives = 59/161 (36%), Gaps = 10/161 (6%)

Query: 17  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF-----NVETVEYKNVSFTVWDVGGQD 71
           +++++VG  A GK++++ +   G                    V  ++V   +WD  GQ+
Sbjct: 3   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 62

Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131
           +   + + Y++     + V  + DRE          ++++E    +    +  NK DL +
Sbjct: 63  EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG--DIPTALVQNKIDLLD 120

Query: 132 AMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWL 172
              +     +      ++ +             + E   +L
Sbjct: 121 DSCIKNEEAE---GLAKRLKLRFYRTSVKEDLNVSEVFKYL 158

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 5e-08
 Identities = 27/172 (15%), Positives = 54/172 (31%), Gaps = 15/172 (8%)

Query: 15  KEMRILMVGLDAAGKTTILYKLKLGE----IVTTIPTIGFNVETVEYKNVSFTVWDVGGQ 70
           + ++ ++VG  A GKT +L            + T+         V+ K V+  +WD  GQ
Sbjct: 4   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63

Query: 71  DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP 130
           +    L    +  T   +              + + +  +         +++   K DL 
Sbjct: 64  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLR 122

Query: 131 NAMSVSEVTDKLGLHSLRQRRWYIQAA----------CATSGQGLYEGLDWL 172
           +     E   +  L  +   +    A            A + +GL    D  
Sbjct: 123 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 174

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (111), Expect = 1e-07
 Identities = 24/131 (18%), Positives = 47/131 (35%), Gaps = 5/131 (3%)

Query: 15  KEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEY---KNVSFTVWDVGGQ 70
           + ++ ++VG  A GKT +L      +     +PT+  N         +  +  ++D  GQ
Sbjct: 2   QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61

Query: 71  DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP 130
           +    L    +  T   +              K++    ++    +   LLV   + DL 
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLV-GTQIDLR 120

Query: 131 NAMSVSEVTDK 141
           +  S  E   K
Sbjct: 121 DDPSTIEKLAK 131

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.2 bits (108), Expect = 3e-07
 Identities = 23/169 (13%), Positives = 56/169 (33%), Gaps = 10/169 (5%)

Query: 17  MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG-----FNVETVEYKNVSFTVWDVGGQ 70
           ++++++G    GKT+++++    +       TIG       V     K  +  VWD  GQ
Sbjct: 3   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 62

Query: 71  DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDE---LHRMLSEDELREAVLLVFANKQ 127
           ++ + L   +++     + V D  +       K          + +       ++  NK 
Sbjct: 63  ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 122

Query: 128 DLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
           D   +  +        L              A +   +    + ++ + 
Sbjct: 123 DAEESKKIVSEKSAQELAKSLGDIPLFL-TSAKNAINVDTAFEEIARSA 170

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (107), Expect = 3e-07
 Identities = 31/164 (18%), Positives = 59/164 (35%), Gaps = 12/164 (7%)

Query: 18  RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYK----NVSFTVWDVGGQDK 72
           ++++VG    GKTT + +   GE     + T+G  V  + +      + F VWD  GQ+K
Sbjct: 5   KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 64

Query: 73  IRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA 132
              L   Y+      I + D   R       +    +          +++  NK D+ + 
Sbjct: 65  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL--VRVCENIPIVLCGNKVDIKDR 122

Query: 133 MSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
              ++          R++        A S     +   WL+  +
Sbjct: 123 KVKAKSI-----VFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 161

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (107), Expect = 4e-07
 Identities = 27/162 (16%), Positives = 57/162 (35%), Gaps = 7/162 (4%)

Query: 15  KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN----VETVEYKNVSFTVWDVGGQ 70
           +  ++++VG    GK+ +  +      V+       +    + +V+       + D  GQ
Sbjct: 5   ETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQ 64

Query: 71  DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP 130
           ++   +   Y +  HG + V   NDR+   E      ++L   +  +  +++  NK DL 
Sbjct: 65  EEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE 124

Query: 131 NAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWL 172
           +   V                     A A     + E  + L
Sbjct: 125 SQRQVPRSEAS---AFGASHHVAYFEASAKLRLNVDEAFEQL 163

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.0 bits (105), Expect = 7e-07
 Identities = 23/145 (15%), Positives = 49/145 (33%), Gaps = 5/145 (3%)

Query: 17  MRILMVGLDAAGKTTILYKLKLGE----IVTTIPTIGFNVETVEYKNVSFTVWDVGGQDK 72
            +I++VG    GKT +L+           V T+         ++ + +  ++WD  G   
Sbjct: 3   CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 62

Query: 73  IRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA 132
              +    + ++  ++   D +  E +     +    + E      +LLV   K DL   
Sbjct: 63  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLV-GCKSDLRTD 121

Query: 133 MSVSEVTDKLGLHSLRQRRWYIQAA 157
           +S            +   +    A 
Sbjct: 122 VSTLVELSNHRQTPVSYDQGANMAK 146

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 8e-07
 Identities = 26/162 (16%), Positives = 60/162 (37%), Gaps = 6/162 (3%)

Query: 15  KEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE---TVEYKNVSFTVWDVGGQ 70
           +E +++++G    GK+ +  +   G  +    PTI  +      V+ +     + D  G 
Sbjct: 2   REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61

Query: 71  DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP 130
           ++   +   Y +N  G   V     +    + +D   ++L   +  +  +++  NK DL 
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121

Query: 131 NAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWL 172
           +   V +   +          +    + A S   + E    L
Sbjct: 122 DERVVGKEQGQNLARQWCNCAFL--ESSAKSKINVNEIFYDL 161

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 8e-07
 Identities = 28/162 (17%), Positives = 59/162 (36%), Gaps = 8/162 (4%)

Query: 15  KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG---FNVETVEYKNVSFTVWDVGGQ 70
            E ++++VG    GK+ +  +L     V    PTI         ++ +     + D  GQ
Sbjct: 2   TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ 61

Query: 71  DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP 130
           ++   +   Y +   G + V   N+ +   +      ++    +  +  +++  NK DL 
Sbjct: 62  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA 121

Query: 131 NAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWL 172
                S         +      YI+   A + QG+ +    L
Sbjct: 122 ARTVESRQAQD---LARSYGIPYIE-TSAKTRQGVEDAFYTL 159

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 1e-06
 Identities = 30/170 (17%), Positives = 59/170 (34%), Gaps = 15/170 (8%)

Query: 17  MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN---VETVEYKNVSFTVWDVGGQDK 72
            ++++VG  A GKT +L      +     +PT+  N      V+ K V   +WD  G + 
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLED 62

Query: 73  IRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA 132
              L    + +T  ++     +  + + E   E      +       +++  NK+DL N 
Sbjct: 63  YDRLRPLSYPDTDVILMCFSIDSPDSL-ENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 121

Query: 133 MSVSEVTDKLGLHSLRQRRWYIQAA----------CATSGQGLYEGLDWL 172
                   K+    ++       A            A +  G+ E  +  
Sbjct: 122 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 171

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.5 bits (101), Expect = 2e-06
 Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 4/124 (3%)

Query: 16  EMRILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVETVEYKNVSFTVWDVGGQD 71
             ++++VG    GK+ +  +      V     TI         ++ +     V D  GQ+
Sbjct: 4   TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQE 63

Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131
           +   +   Y +   G + V    D+            +L   +     +++ ANK DL +
Sbjct: 64  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 123

Query: 132 AMSV 135
              V
Sbjct: 124 LRKV 127

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 2e-05
 Identities = 24/123 (19%), Positives = 49/123 (39%), Gaps = 4/123 (3%)

Query: 15  KEMRILMVGLDAAGKTTILYKLKLGEIVTT----IPTIGFNVETVEYKNVSFTVWDVGGQ 70
           K  +I ++G  + GK+++  +   G+ V +    I      + TV  +     + D  GQ
Sbjct: 3   KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQ 62

Query: 71  DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP 130
           D+     + Y  + +G I V      +     K    ++L      +  +++  NK+DL 
Sbjct: 63  DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 122

Query: 131 NAM 133
              
Sbjct: 123 MER 125

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 1e-04
 Identities = 18/116 (15%), Positives = 44/116 (37%), Gaps = 5/116 (4%)

Query: 16  EMRILMVGLDAAGKTTILYKLKLGE----IVTTIPTIGFNVETVEYKNVSFTVWDVGGQD 71
           + R+ + G    GK++++ +   G      + T+      V + +    +  + D  G  
Sbjct: 2   DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSH 61

Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLS-EDELREAVLLVFANK 126
           +   + R      H  I V     R+ + E K    ++   + ++    +++  NK
Sbjct: 62  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNK 117

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 3e-04
 Identities = 24/165 (14%), Positives = 56/165 (33%), Gaps = 6/165 (3%)

Query: 18  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY---KNVSFTVWDVGGQDKIR 74
           ++L++G    GK+ +       E        G   +       +  S  V+D+  QD  R
Sbjct: 3   KVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGR 62

Query: 75  PLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS 134
            L  H        + V    D+    +A +   ++    +  +  +++  NK DL  +  
Sbjct: 63  WLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSR- 121

Query: 135 VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
                D+    ++     +I+   A     +    + +   +  +
Sbjct: 122 -EVSVDEGRACAVVFDCKFIE-TSAALHHNVQALFEGVVRQIRLR 164

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 4e-04
 Identities = 21/122 (17%), Positives = 38/122 (31%), Gaps = 5/122 (4%)

Query: 17  MRILMVGLDAAGKTTILYKLKLGE----IVTTIPTIGFNVETVEYKNVSFTVWDVGGQDK 72
           ++ ++VG  A GKT +L            V T+        TV  K     ++D  GQ+ 
Sbjct: 10  LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 69

Query: 73  IRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA 132
                R        +  +  S       +   E      ++       L+   + DL + 
Sbjct: 70  YDR-LRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDD 128

Query: 133 MS 134
             
Sbjct: 129 PK 130

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 37.3 bits (85), Expect = 4e-04
 Identities = 33/176 (18%), Positives = 58/176 (32%), Gaps = 22/176 (12%)

Query: 18  RILMVGLDAAGKTTILYKLKLGEI-------VTTIPTIGFNVETVEYKNVSFTVWDVGGQ 70
            + +VG   AGK+++L  +             T  P +G        +   FT+ D+ G 
Sbjct: 3   DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVV---EVSEEERFTLADIPGI 59

Query: 71  DKIRPLWRHYFQNT-------HGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVF 123
            +     +               L++V+D+ D                +  L     LV 
Sbjct: 60  IEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVA 119

Query: 124 ANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
            NK DL    +V  + D L      +    +    A +G GL    + L + V + 
Sbjct: 120 LNKVDLLEEEAVKALADALA-----REGLAVLPVSALTGAGLPALKEALHALVRST 170

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 5e-04
 Identities = 25/126 (19%), Positives = 52/126 (41%), Gaps = 5/126 (3%)

Query: 16  EMRILMVGLDAAGKTTILYKLKLG----EIVTTIPTIGFNVETVEYKNVSFTVWDVGGQD 71
           E+++ + G    GK+ ++ +        E   T+ +   +  T++ + VS  + D  GQ+
Sbjct: 2   EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQE 61

Query: 72  KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131
                   + +   G + V D  DR    E     + +    + +   L++  NK DL +
Sbjct: 62  DTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 120

Query: 132 AMSVSE 137
           +  VS 
Sbjct: 121 SRQVST 126

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 5e-04
 Identities = 28/163 (17%), Positives = 60/163 (36%), Gaps = 7/163 (4%)

Query: 14  RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN----VETVEYKNVSFTVWDVGG 69
           +++ R+++VG    GK+ +  +      VT       +       ++ +     + D  G
Sbjct: 3   QEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAG 62

Query: 70  QDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDL 129
           Q++   +   Y +   G + V    DR    E      ++L   +  E  +++  NK DL
Sbjct: 63  QEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADL 122

Query: 130 PNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWL 172
            +   V++   +      RQ +     A A     + +    L
Sbjct: 123 DHQRQVTQEEGQ---QLARQLKVTYMEASAKIRMNVDQAFHEL 162

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	180
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	100.0
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	100.0
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	100.0
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	100.0
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.98
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.98
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.97
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.97
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.96
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.96
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.95
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.95
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.94
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.94
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.94
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.93
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.93
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.93
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.93
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.92
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.92
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.91
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.91
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.9
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.89
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.88
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.87
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.85
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.85
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.83
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.82
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.82
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.8
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.78
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.78
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.78
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.77
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.68
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.6
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.59
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.57
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.55
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.52
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.2
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.17
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.15
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.12
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.06
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.87
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.65
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.47
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.4
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.38
d1okkd2	207	GTPase domain of the signal recognition particle r	98.35
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.34
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.33
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.32
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.22
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.21
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.18
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.1
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.08
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	98.07
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	98.05
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.98
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.96
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.96
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.95
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.94
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.94
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.89
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.89
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.85
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.82
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.81
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.8
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.77
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.75
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.69
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.67
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.67
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.66
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.66
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.65
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.65
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.64
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.64
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.64
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.63
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.62
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.62
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.61
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.6
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.6
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.59
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.58
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.58
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.57
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.57
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.56
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	97.55
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.55
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.55
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.54
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.54
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.53
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.52
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.51
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.51
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	97.49
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.49
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	97.49
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.47
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.46
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.46
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.45
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	97.44
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.44
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	97.43
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.43
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.43
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.42
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	97.41
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	97.4
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.4
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.39
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.38
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.38
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	97.37
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	97.36
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.35
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.35
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.3
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	97.27
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	97.23
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.18
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	97.15
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.12
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.12
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.12
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.07
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.06
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.04
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.02
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.98
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.92
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.92
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.91
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.88
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.88
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.78
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.76
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.75
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.74
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	96.69
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.68
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	96.56
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.52
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	96.52
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.51
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.5
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.46
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	96.45
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	96.45
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.44
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.44
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.43
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.42
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.4
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.37
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	96.32
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	96.31
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.24
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	96.22
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	96.17
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.13
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	96.11
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	96.1
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.09
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	96.01
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.95
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.94
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.89
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.89
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.73
d1tuea_	205	Replication protein E1 helicase domain {Human papi	95.73
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.72
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	95.65
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	95.51
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.5
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	95.38
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	95.28
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	95.23
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	95.17
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	95.14
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	95.11
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	95.11
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.1
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	94.9
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	94.9
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	94.89
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	94.89
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.73
d1xpua3	289	Transcription termination factor Rho, ATPase domai	94.73
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	94.41
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	94.3
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	94.19
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	93.52
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	93.16
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	93.06
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	92.88
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	92.85
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	92.84
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	92.76
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	92.54
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	91.66
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	91.39
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	91.3
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	91.0
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	90.96
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	90.18
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	89.47
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	89.38
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	89.27
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	88.85
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	88.69
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	87.99
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	86.89
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	86.04
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	84.62
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	83.18
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	82.66
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	82.23
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	82.2
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	81.25

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=100.00  E-value=3.2e-39  Score=217.79  Aligned_cols=178  Identities=56%  Similarity=0.967  Sum_probs=156.2

Q ss_pred             cchHHHH--hhhcccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHh
Q 030289            2 GMVISRL--KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRH   79 (180)
Q Consensus         2 ~~~~~~~--~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~   79 (180)
                      |...+++  +-....+.+||+++|++|||||||+++|..+......||.+.....+..++..+.+||+||++.+...+..
T Consensus         1 ~~~~~~~~~~l~~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~   80 (182)
T d1moza_           1 GNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRC   80 (182)
T ss_dssp             CHHHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGG
T ss_pred             ChhHHHHHHHHhCCCceEEEEEECCCCCCHHHHHHHHhcCCCCccccccceEEEEEeeCCEEEEEEecccccccchhHHh
Confidence            3344555  23356889999999999999999999999888777889999999999999999999999999999999999


Q ss_pred             hccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeec
Q 030289           80 YFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACA  159 (180)
Q Consensus        80 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (180)
                      +++++|++++|+|++++.++.....|+...+......+.|+++++||+|+.+.....++...++...+...++++++|||
T Consensus        81 ~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA  160 (182)
T d1moza_          81 YYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSA  160 (182)
T ss_dssp             TTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBG
T ss_pred             hhccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHHHHHHHhhCCCEEEEEEC
Confidence            99999999999999999999999999888877766678999999999999887788888988888888888899999999


Q ss_pred             cCCCChHHHHHHHHHHhhhc
Q 030289          160 TSGQGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       160 ~~~~~i~~~~~~l~~~~~~~  179 (180)
                      ++|+||+++|++|.+.+.++
T Consensus       161 ~~g~gv~e~~~~l~~~i~~~  180 (182)
T d1moza_         161 IKGEGITEGLDWLIDVIKEE  180 (182)
T ss_dssp             GGTBTHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHc
Confidence            99999999999999999875

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=100.00  E-value=1.4e-38  Score=213.04  Aligned_cols=167  Identities=70%  Similarity=1.233  Sum_probs=154.2

Q ss_pred             hhcccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEE
Q 030289           10 MLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF   89 (180)
Q Consensus        10 ~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   89 (180)
                      +.+..+.+||+++|++|||||||+++|..+......+|.+............+.+||+||+..++..+..++++++++++
T Consensus         6 ~~~~~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~   85 (173)
T d1e0sa_           6 KIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   85 (173)
T ss_dssp             HHHTTCCEEEEEEEETTSSHHHHHHHTTCCCCEEEEEETTEEEEEEEETTEEEEEEEESCCGGGHHHHGGGTTTCCEEEE
T ss_pred             hhhCCCeEEEEEECCCCCCHHHHHHHHhcCCCCCccceeeeeEEEeeccceeeEEecCCCcchhhhHHHhhhcccceEEE
Confidence            45667889999999999999999999999888888899999999999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHH
Q 030289           90 VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGL  169 (180)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  169 (180)
                      |+|+++.+++.....|+..........+.|+++++||+|+.+.....++...+++..+...++.+++|||++|+||+|+|
T Consensus        86 v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e~~  165 (173)
T d1e0sa_          86 VVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGL  165 (173)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHH
T ss_pred             EEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHHHH
Confidence            99999999999999999888877667789999999999999888888888888888888888999999999999999999


Q ss_pred             HHHHHHh
Q 030289          170 DWLSSNV  176 (180)
Q Consensus       170 ~~l~~~~  176 (180)
                      ++|.+.+
T Consensus       166 ~~l~~~~  172 (173)
T d1e0sa_         166 TWLTSNY  172 (173)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhc
Confidence            9998865

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=100.00  E-value=1.7e-38  Score=213.13  Aligned_cols=171  Identities=46%  Similarity=0.831  Sum_probs=153.6

Q ss_pred             HHHHhhhcccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhcccc
Q 030289            5 ISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNT   84 (180)
Q Consensus         5 ~~~~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   84 (180)
                      +.++ +..+.+++||+++|++|||||||+|+|.++++....++.++....+..+++.+.+||++|++.++..+..+++.+
T Consensus         6 ~~k~-~~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~i~d~~g~~~~~~~~~~~~~~~   84 (176)
T d1fzqa_           6 LRKL-KSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENT   84 (176)
T ss_dssp             HHHC-SSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTC
T ss_pred             HHHh-hCCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcceeeeeeeEEEeccCCeeEeEeeccccccchhHHHHHhhcc
Confidence            4444 345577999999999999999999999999888888899999999999999999999999999999999999999


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCC
Q 030289           85 HGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQG  164 (180)
Q Consensus        85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  164 (180)
                      |++++|||++++.++.....|+..+.......++|+++|+||+|+.++....++.+.+.........+++++|||++|+|
T Consensus        85 ~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~g  164 (176)
T d1fzqa_          85 DILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEG  164 (176)
T ss_dssp             SEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTT
T ss_pred             ceeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHHHHHHHhcCCEEEEEeCCCCCC
Confidence            99999999999999999999998887776667899999999999998888777877777777777888999999999999


Q ss_pred             hHHHHHHHHHHh
Q 030289          165 LYEGLDWLSSNV  176 (180)
Q Consensus       165 i~~~~~~l~~~~  176 (180)
                      |+++|++|++.+
T Consensus       165 v~e~~~~l~~~i  176 (176)
T d1fzqa_         165 VQDGMNWVCKNV  176 (176)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHhcC
Confidence            999999998764

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=100.00  E-value=2e-38  Score=210.72  Aligned_cols=165  Identities=47%  Similarity=0.892  Sum_probs=150.3

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECC
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSN   94 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~   94 (180)
                      +.+||+++|++|||||||+++|.+....+..||.+.....+...++.+.+||+||++.++..+..+++.++++++|||++
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~   80 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSA   80 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETT
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCCCCCcccceEeeeeeeccccccceeeeecCcchhhhhHHHhhhhhhhcceeeeecc
Confidence            47899999999999999999999888888889999999999999999999999999999889999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHH
Q 030289           95 DRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSS  174 (180)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  174 (180)
                      +..++.....++...+......+.|+++|+||+|+.+....++....+........++++++|||++|+||+++|++|.+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~  160 (165)
T d1ksha_          81 DRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLD  160 (165)
T ss_dssp             CGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             cchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999888888877666678999999999999988888887777777777777889999999999999999999999


Q ss_pred             Hhhhc
Q 030289          175 NVSAK  179 (180)
Q Consensus       175 ~~~~~  179 (180)
                      ++.+|
T Consensus       161 ~i~~r  165 (165)
T d1ksha_         161 DISSR  165 (165)
T ss_dssp             HHHTC
T ss_pred             HHHcC
Confidence            98764

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=100.00  E-value=4e-38  Score=209.01  Aligned_cols=161  Identities=32%  Similarity=0.660  Sum_probs=149.1

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSN   94 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~   94 (180)
                      ++||+++|++|||||||+++|..++ ...+.||.+.....+...++.+.+||+||++.+...+..++.+++++++|||++
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~   81 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAA   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETT
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeeeeeeeeEEEEEeeccccccccccccccccccchhhcccccc
Confidence            6899999999999999999999888 456779999999999999999999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHH
Q 030289           95 DRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSS  174 (180)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  174 (180)
                      ++++++....|+..+......+++|+++|+||.|+.+.....++.+.++...+...+++++++||++|.|++++|++|++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~~~l~~  161 (164)
T d1zd9a1          82 DQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ  161 (164)
T ss_dssp             CGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             cccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHHHHHHH
Confidence            99999999999999988777789999999999999888888888888888888888999999999999999999999998


Q ss_pred             Hh
Q 030289          175 NV  176 (180)
Q Consensus       175 ~~  176 (180)
                      .+
T Consensus       162 ~~  163 (164)
T d1zd9a1         162 HS  163 (164)
T ss_dssp             TC
T ss_pred             cc
Confidence            64

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-37  Score=205.60  Aligned_cols=160  Identities=15%  Similarity=0.152  Sum_probs=116.5

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCCccccccccceeE-EEEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEEC
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV-ETVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDS   93 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~-~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   93 (180)
                      |||+++|++|||||||+++|.+.......++.+..+ ..+..  ..+.+.+||++|++.+...+..+++++|++++|||+
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d~   81 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSV   81 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC---------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEET
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCCcCCeeeeeecceeeccccccceeeeecccccccceecccchhhhhhhceeccc
Confidence            799999999999999999999887665556655444 34444  457889999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHH
Q 030289           94 NDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLS  173 (180)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  173 (180)
                      +++++++.+..|+..+........+|+++|+||+|+.+.........   ...+...+++|++|||++|.||+++|.+++
T Consensus        82 t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~---~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~  158 (168)
T d2gjsa1          82 TDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEG---RACAVVFDCKFIETSAALHHNVQALFEGVV  158 (168)
T ss_dssp             TCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHH---HHHHHHHTSEEEECBTTTTBSHHHHHHHHH
T ss_pred             cccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHH---HHHHHhcCCEEEEEeCCCCcCHHHHHHHHH
Confidence            99999999999999887665556789999999999876433211111   112234467899999999999999999999


Q ss_pred             HHhhhc
Q 030289          174 SNVSAK  179 (180)
Q Consensus       174 ~~~~~~  179 (180)
                      +.+..+
T Consensus       159 ~~i~~~  164 (168)
T d2gjsa1         159 RQIRLR  164 (168)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            987654

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-36  Score=203.81  Aligned_cols=163  Identities=19%  Similarity=0.259  Sum_probs=131.6

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhhcCCcc-ccccccce-eEEEEEEc--CeEEEEEEcCCCCCChhhHHhhccccCEE
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGF-NVETVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGL   87 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~-~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   87 (180)
                      .+.+.+||+++|++|||||||+++|+.+.+. .+.+|... ....+..+  .+.+.+||++|++++...+..+++++|++
T Consensus         2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~   81 (173)
T d2fn4a1           2 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF   81 (173)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred             CCCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhccceee
Confidence            3677899999999999999999999988844 44455442 23344443  56888999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCCh
Q 030289           88 IFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGL  165 (180)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  165 (180)
                      ++|||++++++++.+..|+..+.......+.|+++|+||+|+.....  .++..     ..+...+++|++|||++|.||
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~e~Sak~g~gv  156 (173)
T d2fn4a1          82 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEAS-----AFGASHHVAYFEASAKLRLNV  156 (173)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHH-----HHHHHTTCEEEECBTTTTBSH
T ss_pred             eeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhh-----HHHHhcCCEEEEEeCCCCcCH
Confidence            99999999999999999998887655557899999999999875432  22211     222334678999999999999


Q ss_pred             HHHHHHHHHHhhhc
Q 030289          166 YEGLDWLSSNVSAK  179 (180)
Q Consensus       166 ~~~~~~l~~~~~~~  179 (180)
                      +++|+.+++.+.++
T Consensus       157 ~e~f~~l~~~i~k~  170 (173)
T d2fn4a1         157 DEAFEQLVRAVRKY  170 (173)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998765

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-36  Score=200.94  Aligned_cols=161  Identities=16%  Similarity=0.251  Sum_probs=130.8

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCcc-ccccccceeEEEE-EE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETV-EY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF   89 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~~~~~-~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   89 (180)
                      |++|||+++|++|||||||+++|..+.+. .+.+|++..+... ..  ..+.+.+||++|+..+...+..+++++|++++
T Consensus         1 mr~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   80 (167)
T d1c1ya_           1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCcccccccccccccccceeEE
Confidence            57899999999999999999999998844 4567777554332 22  56789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChHH
Q 030289           90 VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYE  167 (180)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  167 (180)
                      |||++++++++.+..|+..+......+++|+++|+||+|+.....  .++.... ..   ...+++|++|||++|.||++
T Consensus        81 v~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~-~~---~~~~~~~~e~Sak~g~gv~e  156 (167)
T d1c1ya_          81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNL-AR---QWCNCAFLESSAKSKINVNE  156 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHH-HH---HTTSCEEEECBTTTTBSHHH
T ss_pred             eeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHH-HH---HhCCCEEEEEcCCCCcCHHH
Confidence            999999999999999999887655557899999999999876433  2221111 10   11356899999999999999


Q ss_pred             HHHHHHHHhhh
Q 030289          168 GLDWLSSNVSA  178 (180)
Q Consensus       168 ~~~~l~~~~~~  178 (180)
                      +|.++++++.+
T Consensus       157 ~F~~l~~~i~k  167 (167)
T d1c1ya_         157 IFYDLVRQINR  167 (167)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHhcC
Confidence            99999998753

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.5e-37  Score=203.91  Aligned_cols=157  Identities=20%  Similarity=0.346  Sum_probs=129.6

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEEEEE----cCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV   90 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (180)
                      +|||+++|++|||||||+++|+.+. ...+.||++..+.....    ..+.+.+||++|+..+...++.+++++|++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            6899999999999999999999888 55567888877665554    568899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHH
Q 030289           91 VDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLD  170 (180)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  170 (180)
                      ||++++++++.+..|+..+...  .+++|+++|+||+|+......++..     ..+...+++|++|||++|.||+++|.
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~-----~~~~~~~~~~~e~Sak~~~~v~e~f~  155 (170)
T d1i2ma_          83 FDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSI-----VFHRKKNLQYYDISAKSNYNFEKPFL  155 (170)
T ss_dssp             EETTSGGGGTTHHHHHHHHHHH--HCSCCEEEEEECCCCSCSCCTTTSH-----HHHSSCSSEEEEEBTTTTBTTTHHHH
T ss_pred             cccccccccchhHHHHHHHhhc--cCCCceeeecchhhhhhhhhhhHHH-----HHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999999887654  3589999999999997654332211     22345667899999999999999999


Q ss_pred             HHHHHhhhc
Q 030289          171 WLSSNVSAK  179 (180)
Q Consensus       171 ~l~~~~~~~  179 (180)
                      +|++.+.++
T Consensus       156 ~l~~~l~~~  164 (170)
T d1i2ma_         156 WLARKLIGD  164 (170)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHccC
Confidence            999988754

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=3e-36  Score=200.64  Aligned_cols=160  Identities=20%  Similarity=0.290  Sum_probs=129.7

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEE-EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE-TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV   90 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (180)
                      +-+||+++|++|||||||+++++.++ ...+.||.+..+. .+..  ..+.+.+||++|++++...+..+++++|++++|
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   82 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccccccccccccccchhhhhhhcccccceeEEE
Confidence            35799999999999999999999888 4566788886553 3334  456889999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289           91 VDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG  168 (180)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (180)
                      ||++++.+++.+..|+..+......+++|+++|+||+|+.+...  .++..+     .++..+++|++|||++|.||+++
T Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~e~Sak~g~gv~e~  157 (168)
T d1u8za_          83 FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKN-----RADQWNVNYVETSAKTRANVDKV  157 (168)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHH-----HHHHHTCEEEECCTTTCTTHHHH
T ss_pred             eeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHH-----HHHHcCCeEEEEcCCCCcCHHHH
Confidence            99999999999999999887655557899999999999865432  333222     22344678999999999999999


Q ss_pred             HHHHHHHhhhc
Q 030289          169 LDWLSSNVSAK  179 (180)
Q Consensus       169 ~~~l~~~~~~~  179 (180)
                      |+++++.+.+|
T Consensus       158 f~~l~~~i~~r  168 (168)
T d1u8za_         158 FFDLMREIRAR  168 (168)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHCc
Confidence            99999998765

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=4.3e-36  Score=200.09  Aligned_cols=158  Identities=19%  Similarity=0.368  Sum_probs=128.4

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEE--EEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVET--VEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV   90 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (180)
                      -+||+++|++|||||||+++|..++ ...+.++.+.....  +..  ..+.+.+|||||++.+..++..+++++|++++|
T Consensus         5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~ilv   84 (169)
T d3raba_           5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM   84 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            5899999999999999999999887 44556677655443  333  346899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289           91 VDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG  168 (180)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (180)
                      ||+++++++.....|+...... .....|+++++||+|+.+...  .++...     .++..++++++|||++|.||+++
T Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~v~~~~~~~-----~~~~~~~~~~e~Sak~g~gv~e~  158 (169)
T d3raba_          85 YDITNEESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCDMEDERVVSSERGRQ-----LADHLGFEFFEASAKDNINVKQT  158 (169)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHH-CCSCCEEEEEEECTTCGGGCCSCHHHHHH-----HHHHHTCEEEECBTTTTBSHHHH
T ss_pred             EECccchhhhhhhhhhhhhhcc-cCCcceEEEEEeecccccccccchhhhHH-----HHHHcCCEEEEecCCCCcCHHHH
Confidence            9999999999999888776443 346789999999999876433  222221     22344678999999999999999


Q ss_pred             HHHHHHHhhhc
Q 030289          169 LDWLSSNVSAK  179 (180)
Q Consensus       169 ~~~l~~~~~~~  179 (180)
                      |+++++.+.+|
T Consensus       159 f~~l~~~i~ek  169 (169)
T d3raba_         159 FERLVDVICEK  169 (169)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHhhC
Confidence            99999998775

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-36  Score=201.65  Aligned_cols=159  Identities=17%  Similarity=0.246  Sum_probs=129.1

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEE-EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE-TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF   89 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   89 (180)
                      +++|||+++|++|||||||+++++.+. ...+.+|++..+. .+..  ..+.+.+||++|++.+...+..+++++|++++
T Consensus         1 mk~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   80 (167)
T d1kaoa_           1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceee
Confidence            578999999999999999999999888 4455667764332 2333  45788999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChHH
Q 030289           90 VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYE  167 (180)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  167 (180)
                      |||+++++++..+..|+..+......+++|+++|+||+|+.....  .++..     ..++..++++++|||++|.||++
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~e~Sak~g~~i~e  155 (167)
T d1kaoa_          81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGR-----ALAEEWGCPFMETSAKSKTMVDE  155 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHH-----HHHHHHTSCEEEECTTCHHHHHH
T ss_pred             eeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHH-----HHHHHcCCeEEEECCCCCcCHHH
Confidence            999999999999999998886655557899999999999876433  22211     11233456799999999999999


Q ss_pred             HHHHHHHHhh
Q 030289          168 GLDWLSSNVS  177 (180)
Q Consensus       168 ~~~~l~~~~~  177 (180)
                      +|.++++++.
T Consensus       156 ~f~~i~~~i~  165 (167)
T d1kaoa_         156 LFAEIVRQMN  165 (167)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            9999999874

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-36  Score=202.06  Aligned_cols=160  Identities=16%  Similarity=0.242  Sum_probs=128.8

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEE-EEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVET-VEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV   90 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (180)
                      +.|||+++|++|||||||+++|+.+. ...+.||++..+.. ...  ..+.+.+||++|++.+...+..+++++|++++|
T Consensus         1 n~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   80 (171)
T d2erxa1           1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   80 (171)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccccceeccccccccccccccccccccceeEEEEE
Confidence            47899999999999999999999888 44567888855443 333  446788999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhccc-ccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChHH
Q 030289           91 VDSNDRERIGEAKDELHRMLSED-ELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYE  167 (180)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  167 (180)
                      ||++++++++.+..|+..+.... ...++|+++|+||+|+.....  .++..     ..++..+++|++|||++|.||++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~-----~~~~~~~~~~~e~Sak~~~~v~e  155 (171)
T d2erxa1          81 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAE-----ALARTWKCAFMETSAKLNHNVKE  155 (171)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHH-----HHHHHHTCEEEECBTTTTBSHHH
T ss_pred             eecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHH-----HHHHHcCCeEEEEcCCCCcCHHH
Confidence            99999999999999988776532 346789999999999865432  22222     12334567899999999999999


Q ss_pred             HHHHHHHHhhhc
Q 030289          168 GLDWLSSNVSAK  179 (180)
Q Consensus       168 ~~~~l~~~~~~~  179 (180)
                      +|+.|++.+.++
T Consensus       156 ~f~~l~~~~~~~  167 (171)
T d2erxa1         156 LFQELLNLEKRR  167 (171)
T ss_dssp             HHHHHHHTCCSS
T ss_pred             HHHHHHHHHHHh
Confidence            999999987765

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.8e-36  Score=199.42  Aligned_cols=161  Identities=15%  Similarity=0.181  Sum_probs=131.9

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEE-EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE-TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF   89 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   89 (180)
                      .+.|||+++|++|||||||++++.++. ...+.||.+..+. .+..  ..+.+.+||++|++.+...+..+++++|++++
T Consensus         2 ~pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ll   81 (169)
T d1x1ra1           2 LPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI   81 (169)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccccccccccccccccccccccccccccchhhhhhhccEEEE
Confidence            356999999999999999999999888 4455677764433 2333  45788999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCC-ChH
Q 030289           90 VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQ-GLY  166 (180)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~  166 (180)
                      |||++++++++.+..|+..+.+.....+.|+++++||+|+.....  .++..     ..++..+++|++|||+++. ||+
T Consensus        82 v~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~-----~~~~~~~~~~~e~Sak~~~~nV~  156 (169)
T d1x1ra1          82 VYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGK-----EMATKYNIPYIETSAKDPPLNVD  156 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHH-----HHHHHHTCCEEEEBCSSSCBSHH
T ss_pred             ecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHH-----HHHHHcCCEEEEEcCCCCCcCHH
Confidence            999999999999999999887665556899999999999977543  23322     2233455689999999876 999


Q ss_pred             HHHHHHHHHhhhc
Q 030289          167 EGLDWLSSNVSAK  179 (180)
Q Consensus       167 ~~~~~l~~~~~~~  179 (180)
                      ++|..+++.+.++
T Consensus       157 ~~F~~l~~~i~~~  169 (169)
T d1x1ra1         157 KTFHDLVRVIRQQ  169 (169)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999998875

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.1e-36  Score=197.94  Aligned_cols=162  Identities=16%  Similarity=0.243  Sum_probs=132.2

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEEEEE---cCeEEEEEEcCCCCCChhhHHhhccccCEEEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEY---KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF   89 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   89 (180)
                      ++.|||+++|++|||||||+++|+++. ...+.+|.+..+.....   ..+.+.+||++|++.+...+..+++.++++++
T Consensus         1 m~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ii   80 (166)
T d1ctqa_           1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   80 (166)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCccccccchhhhhhcccccce
Confidence            457999999999999999999999988 44456777755443322   45789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHH
Q 030289           90 VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGL  169 (180)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  169 (180)
                      |||++++.+++.+..|+..+......+++|+++|+||+|+.......+....    .++..+++|++|||++|+||+++|
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~----~~~~~~~~~~e~Sak~g~gi~e~f  156 (166)
T d1ctqa_          81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQD----LARSYGIPYIETSAKTRQGVEDAF  156 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHHH----HHHHHTCCEEECCTTTCTTHHHHH
T ss_pred             eecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccccHHHHHH----HHHHhCCeEEEEcCCCCcCHHHHH
Confidence            9999999999999999998876655567999999999998764322222212    223445689999999999999999


Q ss_pred             HHHHHHhhhc
Q 030289          170 DWLSSNVSAK  179 (180)
Q Consensus       170 ~~l~~~~~~~  179 (180)
                      .++++.+.++
T Consensus       157 ~~i~~~i~~~  166 (166)
T d1ctqa_         157 YTLVREIRQH  166 (166)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHhC
Confidence            9999998763

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-35  Score=197.79  Aligned_cols=161  Identities=18%  Similarity=0.263  Sum_probs=127.9

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC-cccccccccee-EEEEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFN-VETVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF   89 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~-~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   89 (180)
                      .++|||+++|++|||||||++++..+. ...+.||.+.. ...+..  ..+.+.+||++|+..+...+..+++.+|++++
T Consensus         3 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   82 (171)
T d2erya1           3 QEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLL   82 (171)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccccccccccccccccccccccccccccceEEE
Confidence            346999999999999999999999888 44556776633 333444  44689999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChHH
Q 030289           90 VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYE  167 (180)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  167 (180)
                      |||.+++++++.+..|+..+.........|+++|+||+|+.....  .++..     ..++..+++|++|||++|.||++
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~-----~~~~~~~~~~~e~Sak~~~~i~e  157 (171)
T d2erya1          83 VFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQ-----QLARQLKVTYMEASAKIRMNVDQ  157 (171)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHH-----HHHHHTTCEEEECBTTTTBSHHH
T ss_pred             eeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHH-----HHHHHcCCEEEEEcCCCCcCHHH
Confidence            999999999999999998887655556799999999999876533  22222     12334567899999999999999


Q ss_pred             HHHHHHHHhhhc
Q 030289          168 GLDWLSSNVSAK  179 (180)
Q Consensus       168 ~~~~l~~~~~~~  179 (180)
                      +|..+++.+.+.
T Consensus       158 ~f~~l~~~i~k~  169 (171)
T d2erya1         158 AFHELVRVIRKF  169 (171)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999998764

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.1e-36  Score=199.33  Aligned_cols=160  Identities=16%  Similarity=0.181  Sum_probs=131.7

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEE-EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE-TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF   89 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   89 (180)
                      .+.+||+++|++|||||||+++|+++. ...+.||.+..+. .+..  ..+.+.+||++|.+.+..++..+++++|++++
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL   81 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEEEeeecccccccccccccchhhhhhhhhhh
Confidence            456899999999999999999999887 4456788887653 3444  45678899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChHH
Q 030289           90 VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYE  167 (180)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  167 (180)
                      |||++++++++.+..|+..+.......++|+++|+||+|+..+..  .++..     ..++..+++|++|||++|.||++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~-----~~a~~~~~~~~e~Sak~~~~v~~  156 (167)
T d1xtqa1          82 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGK-----ALAESWNAAFLESSAKENQTAVD  156 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHH-----HHHHHHTCEEEECCTTCHHHHHH
T ss_pred             hcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHH-----HHHHHcCCEEEEEecCCCCCHHH
Confidence            999999999999999999887665557899999999999876433  33222     12234567899999999999999


Q ss_pred             HHHHHHHHhhh
Q 030289          168 GLDWLSSNVSA  178 (180)
Q Consensus       168 ~~~~l~~~~~~  178 (180)
                      +|+.+++.+.+
T Consensus       157 ~f~~li~~~~K  167 (167)
T d1xtqa1         157 VFRRIILEAEK  167 (167)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhcC
Confidence            99999988753

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.7e-36  Score=200.17  Aligned_cols=156  Identities=17%  Similarity=0.324  Sum_probs=128.5

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEEEEE----cCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV   90 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (180)
                      .+||+++|++|||||||+++|..++ ...+.||++........    ..+.+.+||++|+.++...+..+++++|++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            4799999999999999999999887 55667888765554433    357889999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289           91 VDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG  168 (180)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (180)
                      ||++++++++.+..|+..+...  .+++|+++|+||+|+.+++.  .++..     ..++..+++|++|||++|.||+++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~--~~~~~iilVgnK~Dl~~~~~v~~~~~~-----~~~~~~~~~~~e~Sak~g~~v~e~  154 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAE--VGDIPTALVQNKIDLLDDSCIKNEEAE-----GLAKRLKLRFYRTSVKEDLNVSEV  154 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHH--HCSCCEEEEEECGGGGGGCSSCHHHHH-----HHHHHHTCEEEECBTTTTBSSHHH
T ss_pred             Eeccchhhhhhccccccccccc--CCCceEEEeeccCCcccceeeeehhhH-----HHHHHcCCEEEEeccCCCcCHHHH
Confidence            9999999999999999888654  35789999999999876433  22222     122345678999999999999999


Q ss_pred             HHHHHHHhhh
Q 030289          169 LDWLSSNVSA  178 (180)
Q Consensus       169 ~~~l~~~~~~  178 (180)
                      |++|++.+.+
T Consensus       155 f~~l~~~~lq  164 (164)
T d1z2aa1         155 FKYLAEKHLQ  164 (164)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999998764

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-35  Score=197.01  Aligned_cols=157  Identities=21%  Similarity=0.323  Sum_probs=122.9

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEEEEE----cCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV   90 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (180)
                      .|||+++|++|||||||+++|..+. ...+.||.+........    ....+.+||++|++.+...+..+++++|++++|
T Consensus         3 ~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   82 (167)
T d1z08a1           3 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILV   82 (167)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEEE
Confidence            5899999999999999999999888 44566777766554433    358899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289           91 VDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG  168 (180)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (180)
                      ||++++++++.+..|+..+... .....|+++|+||+|+..+..  .++..     ..++..++++++|||++|.||+++
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~~-~~~~~~~ilvgnK~Dl~~~~~v~~~e~~-----~~a~~~~~~~~e~Sak~~~~v~e~  156 (167)
T d1z08a1          83 YDITDEDSFQKVKNWVKELRKM-LGNEICLCIVGNKIDLEKERHVSIQEAE-----SYAESVGAKHYHTSAKQNKGIEEL  156 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHH-HGGGSEEEEEEECGGGGGGCCSCHHHHH-----HHHHHTTCEEEEEBTTTTBSHHHH
T ss_pred             EeCCchhHHHhhhhhhhhcccc-cccccceeeeccccccccccccchHHHH-----HHHHHcCCeEEEEecCCCcCHHHH
Confidence            9999999999999998876543 235789999999999876433  33322     223445678999999999999999


Q ss_pred             HHHHHHHhhh
Q 030289          169 LDWLSSNVSA  178 (180)
Q Consensus       169 ~~~l~~~~~~  178 (180)
                      |.+|++.+.+
T Consensus       157 F~~l~~~i~~  166 (167)
T d1z08a1         157 FLDLCKRMIE  166 (167)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhh
Confidence            9999998865

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-35  Score=194.60  Aligned_cols=155  Identities=16%  Similarity=0.353  Sum_probs=128.2

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEEEEE----cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV   91 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (180)
                      |||+++|++|||||||+++|.+++ ...+.++.+........    ..+.+.+||++|++.+...+..+++++|++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            799999999999999999999888 55566777766554433    3578899999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChHHHH
Q 030289           92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGL  169 (180)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  169 (180)
                      |++++.+++.+..|+..+.... .++.|+++|+||+|+.+...  .++...     .++..+++|++|||++|.||+++|
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~e~SAk~g~~v~e~f  154 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGER-----KAKELNVMFIETSAKAGYNVKQLF  154 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHHH-----HHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             ccccccchhhhHhhHHHHHHhc-CCCceEEEEecccchhhhhhhhHHHHHH-----HHHHcCCEEEEecCCCCcCHHHHH
Confidence            9999999999999998876543 36899999999999875332  222221     223456789999999999999999


Q ss_pred             HHHHHHhh
Q 030289          170 DWLSSNVS  177 (180)
Q Consensus       170 ~~l~~~~~  177 (180)
                      ++|+++|.
T Consensus       155 ~~i~~~l~  162 (164)
T d1yzqa1         155 RRVAAALP  162 (164)
T ss_dssp             HHHHHHSC
T ss_pred             HHHHHhhC
Confidence            99999875

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.1e-35  Score=195.54  Aligned_cols=158  Identities=19%  Similarity=0.293  Sum_probs=129.4

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEEEEE----cCeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLI   88 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   88 (180)
                      ++++||+++|.+|||||||+++|..++ ...+.+|.+........    ....+.+||++|++.+...+..+++++++++
T Consensus         2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (167)
T d1z0ja1           2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   81 (167)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceE
Confidence            678999999999999999999999888 44556777765544333    3456789999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChH
Q 030289           89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLY  166 (180)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  166 (180)
                      +|||++++++++.+..|+...... ...+.|+++|+||+|+.++..  .++..     ..+...+++|++|||++|.||+
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~-----~~~~~~~~~~~e~SAk~~~nV~  155 (167)
T d1z0ja1          82 IVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAK-----DYADSIHAIFVETSAKNAININ  155 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHH-----HHHHHTTCEEEECBTTTTBSHH
T ss_pred             EEeeechhhhhhhHHHhhhhhhhc-cCCcceEEEecccchhccccchhHHHHH-----HHHHHcCCEEEEEecCCCCCHH
Confidence            999999999999999998777544 346899999999999975433  22222     1223456789999999999999


Q ss_pred             HHHHHHHHHhh
Q 030289          167 EGLDWLSSNVS  177 (180)
Q Consensus       167 ~~~~~l~~~~~  177 (180)
                      ++|.++++++.
T Consensus       156 e~f~~l~~~i~  166 (167)
T d1z0ja1         156 ELFIEISRRIP  166 (167)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHHhCC
Confidence            99999999874

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=100.00  E-value=4e-34  Score=188.50  Aligned_cols=160  Identities=88%  Similarity=1.389  Sum_probs=144.6

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCCh
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDR   96 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~   96 (180)
                      +||+++|++|||||||+++|+++++....++........+...+.+.+||++|...+...+..++.+++++++++|..++
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR   80 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeEEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEEecCh
Confidence            58999999999999999999988866666666666777888999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHHh
Q 030289           97 ERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV  176 (180)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  176 (180)
                      .++.....|+............|+++++||+|+.......++........++..++++++|||++|+||+++|++|.+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~l~~~l  160 (160)
T d1r8sa_          81 ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL  160 (160)
T ss_dssp             GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHHHHhcC
Confidence            99999999999988877778899999999999998888888887777777777889999999999999999999999874

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-35  Score=196.80  Aligned_cols=158  Identities=20%  Similarity=0.333  Sum_probs=126.7

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeE--EEEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV--ETVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV   90 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (180)
                      .+||+++|++|||||||+++|+.+.+ ..+.++.+..+  ..+..  ..+++.+|||||++++...++.++++++++++|
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v   84 (171)
T d2ew1a1           5 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILT   84 (171)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEEe
Confidence            58999999999999999999998873 44555555443  44444  456789999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289           91 VDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG  168 (180)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (180)
                      +|++++.+++....|+..+... .....|+++|+||+|+.....  .++.. .    .+...++++++|||++|.||+++
T Consensus        85 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ilvgnK~D~~~~~~v~~~~~~-~----~~~~~~~~~~~~SAktg~gV~e~  158 (171)
T d2ew1a1          85 YDITCEESFRCLPEWLREIEQY-ASNKVITVLVGNKIDLAERREVSQQRAE-E----FSEAQDMYYLETSAKESDNVEKL  158 (171)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCSSCHHHHH-H----HHHHHTCCEEECCTTTCTTHHHH
T ss_pred             eecccchhhhhhhhhhhhhccc-ccccccEEEEEeecccccccchhhhHHH-H----HHHhCCCEEEEEccCCCCCHHHH
Confidence            9999999999999998887654 235789999999999865432  22222 1    12334567999999999999999


Q ss_pred             HHHHHHHhhhc
Q 030289          169 LDWLSSNVSAK  179 (180)
Q Consensus       169 ~~~l~~~~~~~  179 (180)
                      |.++++.+.++
T Consensus       159 f~~l~~~l~~~  169 (171)
T d2ew1a1         159 FLDLACRLISE  169 (171)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999887653

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-35  Score=195.09  Aligned_cols=158  Identities=19%  Similarity=0.231  Sum_probs=126.3

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEEEEE---cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEY---KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV   91 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (180)
                      .+||+++|++|||||||+++++.+. ...+.||++..+.....   ..+.+.+||++|+..+. .+..++++++++++||
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~   80 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVY   80 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccccccccceEEEEeecccccccc-cchhhhcccccceeec
Confidence            5799999999999999999999988 55667898876544333   44789999999998875 5567889999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC--CHhHHHhHhCCCccCCcceEEEEeeccCCC-ChHHH
Q 030289           92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM--SVSEVTDKLGLHSLRQRRWYIQAACATSGQ-GLYEG  168 (180)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~  168 (180)
                      |+++++++..+..|+..........+.|+++|+||+|+....  +.++..+     .++..+++|++|||++|. ||+++
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~-----~a~~~~~~~~e~Saktg~gnV~e~  155 (168)
T d2atva1          81 DITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEK-----LATELACAFYECSACTGEGNITEI  155 (168)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHH-----HHHHHTSEEEECCTTTCTTCHHHH
T ss_pred             ccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHH-----HHHHhCCeEEEEccccCCcCHHHH
Confidence            999999999999887655444445689999999999986543  2333221     123446789999999998 59999


Q ss_pred             HHHHHHHhhhc
Q 030289          169 LDWLSSNVSAK  179 (180)
Q Consensus       169 ~~~l~~~~~~~  179 (180)
                      |..+++.+.++
T Consensus       156 F~~l~~~i~~~  166 (168)
T d2atva1         156 FYELCREVRRR  166 (168)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998765

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=100.00  E-value=8.1e-34  Score=190.17  Aligned_cols=176  Identities=47%  Similarity=0.880  Sum_probs=154.5

Q ss_pred             cchHHHHhhhcccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhc
Q 030289            2 GMVISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYF   81 (180)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~   81 (180)
                      |.+++.+-+.+..+.+||+|+|.+|||||||++++.+++.....++.+.....+...+.++.+||+++++..+..+..++
T Consensus         1 ~~~~~~~~~~~~~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   80 (177)
T d1zj6a1           1 GILFTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYY   80 (177)
T ss_dssp             CHHHHHHHHHHTTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHH
T ss_pred             ChhHHHHHHHhCCCeEEEEEECCCCCCHHHHHHHHhcCCCCccccccceeEEEEeecceEEEEeccccccccccchhhhh
Confidence            45677778888999999999999999999999999999877777888888888888999999999999999999999999


Q ss_pred             cccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccC
Q 030289           82 QNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATS  161 (180)
Q Consensus        82 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  161 (180)
                      ..++++++++|.++..++.....+.............|+++|+||+|+.......++...+........++++++|||++
T Consensus        81 ~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~t  160 (177)
T d1zj6a1          81 TNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALT  160 (177)
T ss_dssp             TTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred             ccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHHHHHhhHhcCCEEEEEeCCC
Confidence            99999999999999999988888777777666667899999999999988877888888877777777889999999999


Q ss_pred             CCChHHHHHHHHHHhh
Q 030289          162 GQGLYEGLDWLSSNVS  177 (180)
Q Consensus       162 ~~~i~~~~~~l~~~~~  177 (180)
                      |+||++++++|.+++.
T Consensus       161 g~Gi~e~~~~L~~~lk  176 (177)
T d1zj6a1         161 GEGLCQGLEWMMSRLK  176 (177)
T ss_dssp             TBTHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHhC
Confidence            9999999999998874

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-35  Score=196.02  Aligned_cols=162  Identities=17%  Similarity=0.246  Sum_probs=125.9

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEE-EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE-TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV   91 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (180)
                      +.||+++|++|||||||+++|..+. ...+.||.+.... ....  ..+.+.+||++|++.+...+..+++++|++++||
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   81 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCF   81 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhcccchhhhhhc
Confidence            5799999999999999999999988 4455677764432 2233  5568999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCC---------CccCCcc-eEEEEeeccC
Q 030289           92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGL---------HSLRQRR-WYIQAACATS  161 (180)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~---------~~~~~~~-~~~~~~Sa~~  161 (180)
                      |++++++++....|+....... .+++|+++|+||+|+.+.....+.......         ..++..+ .+|++|||++
T Consensus        82 d~~~~~Sf~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt  160 (177)
T d1kmqa_          82 SIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT  160 (177)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHH-STTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             ccchhHHHHHHHHHHHHHHHHh-CCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence            9999999999988777766543 367999999999999764322211111111         1111222 4899999999


Q ss_pred             CCChHHHHHHHHHHhhh
Q 030289          162 GQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       162 ~~~i~~~~~~l~~~~~~  178 (180)
                      |.||+++|+.+++++.+
T Consensus       161 ~~gi~e~F~~i~~~~l~  177 (177)
T d1kmqa_         161 KDGVREVFEMATRAALQ  177 (177)
T ss_dssp             CTTHHHHHHHHHHHHHC
T ss_pred             CcCHHHHHHHHHHHHhC
Confidence            99999999999998764

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.1e-35  Score=194.02  Aligned_cols=159  Identities=20%  Similarity=0.335  Sum_probs=130.5

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEEEEE----cCeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLI   88 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   88 (180)
                      ...|||+++|++|||||||+++|..++ ...+.+|.+........    ..+.+.+||++|++.+...+..+++++++++
T Consensus         4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   83 (170)
T d1r2qa_           4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             eeEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEE
Confidence            457899999999999999999999888 44556777766554333    4578999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChH
Q 030289           89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLY  166 (180)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  166 (180)
                      +|+|.+++++++....|+..+.+. ..++.|+++|+||+|+..+..  .++.. .    .+...+++|++|||++|.||+
T Consensus        84 lv~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~e~~~-~----~~~~~~~~~~e~SAk~g~~V~  157 (170)
T d1r2qa_          84 VVYDITNEESFARAKNWVKELQRQ-ASPNIVIALSGNKADLANKRAVDFQEAQ-S----YADDNSLLFMETSAKTSMNVN  157 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHH-H----HHHHTTCEEEECCTTTCTTHH
T ss_pred             EEeccchhhHHHHHHHHhhhhhhc-cCCCceEEeecccccccccccccHHHHH-H----HHHhcCCEEEEeeCCCCCCHH
Confidence            999999999999999998887553 346899999999999876433  22221 1    223345789999999999999


Q ss_pred             HHHHHHHHHhhh
Q 030289          167 EGLDWLSSNVSA  178 (180)
Q Consensus       167 ~~~~~l~~~~~~  178 (180)
                      ++|..|++.+.+
T Consensus       158 e~f~~l~~~i~~  169 (170)
T d1r2qa_         158 EIFMAIAKKLPK  169 (170)
T ss_dssp             HHHHHHHHTSCC
T ss_pred             HHHHHHHHHHhh
Confidence            999999998765

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.3e-35  Score=196.69  Aligned_cols=162  Identities=18%  Similarity=0.357  Sum_probs=129.1

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEE--EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE--TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV   90 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (180)
                      .+||+++|++|||||||++++..++ ...+.+|.+..+.  .+..  ..+.+.+||++|++.+...++.+++++|++++|
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVV   82 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEE
Confidence            5799999999999999999999888 4556678876554  4444  457899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHH
Q 030289           91 VDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLD  170 (180)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  170 (180)
                      ||.+++.+++.+..|+....... ....|+++++||+|+.+.....++........+++.+++|++|||++|.||+++|.
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~  161 (170)
T d1ek0a_          83 YDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EeCCcccchhhhhhhhhhhcccc-ccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHH
Confidence            99999999999999988765543 45789999999999865322111111111222344567999999999999999999


Q ss_pred             HHHHHhhh
Q 030289          171 WLSSNVSA  178 (180)
Q Consensus       171 ~l~~~~~~  178 (180)
                      .|+++|..
T Consensus       162 ~i~~~i~~  169 (170)
T d1ek0a_         162 GIGEKIPL  169 (170)
T ss_dssp             HHHTTSCC
T ss_pred             HHHHHhcc
Confidence            99998764

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-34  Score=191.97  Aligned_cols=155  Identities=19%  Similarity=0.350  Sum_probs=124.3

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeE--EEEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV--ETVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV   90 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (180)
                      .|||+++|++|||||||+++|.++++ .++.++....+  ..+..  ..+.+.+||++|++.+..++..+++++|++++|
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv   83 (166)
T d1z0fa1           4 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   83 (166)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEEE
Confidence            48999999999999999999998873 34445555433  34444  356899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289           91 VDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG  168 (180)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (180)
                      ||++++++++....|+..+... .....|+++++||+|+.....  .++...     .++..++++++|||++|.||+++
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~e~Saktg~~v~e~  157 (166)
T d1z0fa1          84 YDITRRSTYNHLSSWLTDARNL-TNPNTVIILIGNKADLEAQRDVTYEEAKQ-----FAEENGLLFLEASAKTGENVEDA  157 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHH-----HHHHTTCEEEECCTTTCTTHHHH
T ss_pred             eccCchHHHHHHHHHHHHHHhh-ccccceEEEEcccccchhhcccHHHHHHH-----HHHHcCCEEEEEeCCCCCCHHHH
Confidence            9999999999999998877543 346789999999999865332  222221     12334578999999999999999


Q ss_pred             HHHHHHHh
Q 030289          169 LDWLSSNV  176 (180)
Q Consensus       169 ~~~l~~~~  176 (180)
                      |.++++.+
T Consensus       158 f~~i~~~i  165 (166)
T d1z0fa1         158 FLEAAKKI  165 (166)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99999876

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-34  Score=195.11  Aligned_cols=166  Identities=16%  Similarity=0.154  Sum_probs=127.4

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEE-EEE--cCeEEEEEEcCCCCCChhhHHhhccccCEE
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVET-VEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGL   87 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   87 (180)
                      +....+||+++|++|||||||+++|+.+. ...+.||++..... +..  ..+.+.+||++|++.+...+..+++++|++
T Consensus         5 ~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~   84 (185)
T d2atxa1           5 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF   84 (185)
T ss_dssp             CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhccccccee
Confidence            35678999999999999999999999888 45566777644332 333  457889999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCC---------CccCCcc-eEEEEe
Q 030289           88 IFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGL---------HSLRQRR-WYIQAA  157 (180)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~---------~~~~~~~-~~~~~~  157 (180)
                      ++|||++++++++....|+....+.. .+++|+++|+||+|+.+.............         ..++..+ .+|++|
T Consensus        85 ilv~d~t~~~Sf~~~~~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~  163 (185)
T d2atxa1          85 LICFSVVNPASFQNVKEEWVPELKEY-APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVEC  163 (185)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEEC
T ss_pred             eeccccchHHHHHHHHHHHHHHHHhc-CCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEEe
Confidence            99999999999998877766666543 468999999999998764322111111100         1111222 579999


Q ss_pred             eccCCCChHHHHHHHHHHhhh
Q 030289          158 CATSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       158 Sa~~~~~i~~~~~~l~~~~~~  178 (180)
                      ||++|.||+++|+.+++++..
T Consensus       164 SAk~~~gv~e~F~~li~~il~  184 (185)
T d2atxa1         164 SALTQKGLKTVFDEAIIAILT  184 (185)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHC
T ss_pred             cCCCCcCHHHHHHHHHHHHcC
Confidence            999999999999999998753

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-35  Score=198.12  Aligned_cols=159  Identities=21%  Similarity=0.397  Sum_probs=128.2

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEE--EEEE------------cCeEEEEEEcCCCCCChhhHHhh
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE--TVEY------------KNVSFTVWDVGGQDKIRPLWRHY   80 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~--~~~~------------~~~~~~i~D~~G~~~~~~~~~~~   80 (180)
                      .+||+++|++|||||||+++|++++ ...+.+|.+..+.  .+..            ..+++.+||++|+++++.++..+
T Consensus         5 ~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~~   84 (186)
T d2f7sa1           5 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAF   84 (186)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHHH
Confidence            5899999999999999999999887 3344455554433  2222            23679999999999999999999


Q ss_pred             ccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCH--hHHHhHhCCCccCCcceEEEEee
Q 030289           81 FQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSV--SEVTDKLGLHSLRQRRWYIQAAC  158 (180)
Q Consensus        81 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~S  158 (180)
                      ++++|++++|||++++.+++.+..|+..+.........|+++|+||+|+.....+  ++..     ..++..++++++||
T Consensus        85 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~-----~~~~~~~~~~~e~S  159 (186)
T d2f7sa1          85 FRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQAR-----ELADKYGIPYFETS  159 (186)
T ss_dssp             HTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHH-----HHHHHTTCCEEEEB
T ss_pred             HhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHH-----HHHHHcCCEEEEEe
Confidence            9999999999999999999999999988876666677899999999999764432  2221     22234456899999


Q ss_pred             ccCCCChHHHHHHHHHHhhhc
Q 030289          159 ATSGQGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       159 a~~~~~i~~~~~~l~~~~~~~  179 (180)
                      |++|+||+++|+++++.+.++
T Consensus       160 ak~~~~i~e~f~~l~~~i~~k  180 (186)
T d2f7sa1         160 AATGQNVEKAVETLLDLIMKR  180 (186)
T ss_dssp             TTTTBTHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999988764

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-34  Score=193.19  Aligned_cols=159  Identities=21%  Similarity=0.334  Sum_probs=128.2

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEEEEE----cCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV   90 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (180)
                      .+||+++|++|||||||+++|..++ ...+.+|.+........    ....+.+||+||++++...+..+++.++++++|
T Consensus         5 ~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (174)
T d2bmea1           5 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLV   84 (174)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEEE
Confidence            4899999999999999999999887 44555666655544333    456899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhH-HHhHhCCCccCCcceEEEEeeccCCCChHHHH
Q 030289           91 VDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSE-VTDKLGLHSLRQRRWYIQAACATSGQGLYEGL  169 (180)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  169 (180)
                      ||.++++++..+..|+..+.... ..++|+++|+||+|+........ ....    .+...++++++|||++|.||+++|
T Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~----~~~~~~~~~~e~Sak~~~gi~e~f  159 (174)
T d2bmea1          85 YDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASR----FAQENELMFLETSALTGENVEEAF  159 (174)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHH----HHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             EecccchhHHHHhhhhccccccc-CCceEEEEEEecccccchhchhhhHHHH----HHHhCCCEEEEeeCCCCcCHHHHH
Confidence            99999999999999998876543 36799999999999865433211 1111    123346789999999999999999


Q ss_pred             HHHHHHhhhc
Q 030289          170 DWLSSNVSAK  179 (180)
Q Consensus       170 ~~l~~~~~~~  179 (180)
                      .++++.+.++
T Consensus       160 ~~l~~~i~~~  169 (174)
T d2bmea1         160 VQCARKILNK  169 (174)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999987654

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.5e-35  Score=194.71  Aligned_cols=161  Identities=19%  Similarity=0.372  Sum_probs=102.6

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeE--EEEEEc--CeEEEEEEcCCCCCChhhHHhhccccCEEEE
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV--ETVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF   89 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   89 (180)
                      .-|||+++|.+|||||||+++|++++ ..++.+|.+..+  ..+..+  .+.+.+||+||++.+...+..+++++|++++
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~   84 (173)
T d2fu5c1           5 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIML   84 (173)
T ss_dssp             EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEE
Confidence            45899999999999999999999877 445556766544  445543  4678899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHH
Q 030289           90 VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGL  169 (180)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  169 (180)
                      |||++++.+++.+..|+..+... ...+.|+++|+||+|+...........   ...+...++++++|||++|+||+++|
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilv~~k~D~~~~~~~~~~~~---~~~~~~~~~~~~e~Sa~~g~gv~e~f  160 (173)
T d2fu5c1          85 VYDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERG---EKLALDYGIKFMETSAKANINVENAF  160 (173)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEEC--CCSCCCSCHHHH---HHHHHHHTCEEEECCC---CCHHHHH
T ss_pred             EEECCChhhHHHHHHHHHHhhhh-ccCCceEEEEEecccchhhcccHHHHH---HHHHHhcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999998887543 346799999999999887543221111   01223456789999999999999999


Q ss_pred             HHHHHHhhhc
Q 030289          170 DWLSSNVSAK  179 (180)
Q Consensus       170 ~~l~~~~~~~  179 (180)
                      .++++.+.++
T Consensus       161 ~~l~~~i~~k  170 (173)
T d2fu5c1         161 FTLARDIKAK  170 (173)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998765

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-34  Score=193.22  Aligned_cols=158  Identities=20%  Similarity=0.328  Sum_probs=123.4

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEE--EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE--TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV   90 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (180)
                      -+||+|+|++|||||||++++.+++ ...+.++......  ....  ....+.+||++|++.+...++.+++.+|++++|
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv   82 (173)
T d2a5ja1           3 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV   82 (173)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEEE
Confidence            3799999999999999999999888 4444454443332  2333  457899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289           91 VDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG  168 (180)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (180)
                      ||++++++++.+..|+..+... ...++|+++|+||+|+.....  .++.. .    .++..+++|++|||++|.||+++
T Consensus        83 ~d~~~~~sf~~~~~~~~~~~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~-~----~a~~~~~~~~e~Sa~tg~~V~e~  156 (173)
T d2a5ja1          83 YDITRRETFNHLTSWLEDARQH-SSSNMVIMLIGNKSDLESRRDVKREEGE-A----FAREHGLIFMETSAKTACNVEEA  156 (173)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHH-H----HHHHHTCEEEEECTTTCTTHHHH
T ss_pred             EeecChHHHHhHHHHHHHHHHh-CCCCCeEEEEecCCchhhhhhhHHHHHH-H----HHHHcCCEEEEecCCCCCCHHHH
Confidence            9999999999999999887654 346799999999999865332  22221 1    12334568999999999999999


Q ss_pred             HHHHHHHhhhc
Q 030289          169 LDWLSSNVSAK  179 (180)
Q Consensus       169 ~~~l~~~~~~~  179 (180)
                      |.++++.+.++
T Consensus       157 f~~i~~~i~~~  167 (173)
T d2a5ja1         157 FINTAKEIYRK  167 (173)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999987654

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-34  Score=194.25  Aligned_cols=165  Identities=16%  Similarity=0.177  Sum_probs=127.4

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEEEE-E--cCeEEEEEEcCCCCCChhhHHhhccccCEEEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVE-Y--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF   89 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~~~-~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   89 (180)
                      |+.+||+++|++|||||||+++|..+. ...+.||++....... .  +.+.+.+||++|++++...+..+++++|++++
T Consensus         1 m~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   80 (191)
T d2ngra_           1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV   80 (191)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CCceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeec
Confidence            457899999999999999999999888 5566788875543322 2  45689999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhH---------hCCCccCC-cceEEEEeec
Q 030289           90 VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDK---------LGLHSLRQ-RRWYIQAACA  159 (180)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~---------~~~~~~~~-~~~~~~~~Sa  159 (180)
                      |||++++++++.+..|+....... ..+.|+++|+||+|+.+.....+....         .+...+.+ .+.+|++|||
T Consensus        81 v~d~~~~~Sf~~~~~~~~~~~~~~-~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA  159 (191)
T d2ngra_          81 CFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA  159 (191)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHH-CTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCT
T ss_pred             ccccchHHHHHHHHHHHHHHHhhc-CCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeC
Confidence            999999999999987766665543 368999999999998754221111100         00011112 2357999999


Q ss_pred             cCCCChHHHHHHHHHHhhhc
Q 030289          160 TSGQGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       160 ~~~~~i~~~~~~l~~~~~~~  179 (180)
                      ++|.||+++|+.+++.+.+.
T Consensus       160 k~~~~V~e~f~~l~~~~~~~  179 (191)
T d2ngra_         160 LTQKGLKNVFDEAILAALEP  179 (191)
T ss_dssp             TTCTTHHHHHHHHHHHHTSC
T ss_pred             CCCcCHHHHHHHHHHHHhcC
Confidence            99999999999999887654

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-33  Score=188.53  Aligned_cols=158  Identities=19%  Similarity=0.403  Sum_probs=119.2

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCCcc-cc-ccccceeEEE--EEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGEIV-TT-IPTIGFNVET--VEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLI   88 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~~~-~~-~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   88 (180)
                      ..|||+++|++|||||||++++..+++. .+ .++.+.....  +..  ..+.+.+|||||++.+..++..+++++|+++
T Consensus         5 ~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i   84 (170)
T d2g6ba1           5 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALL   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeE
Confidence            4689999999999999999999988743 33 3455555544  333  3468899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCH--hHHHhHhCCCccCCcceEEEEeeccCCCChH
Q 030289           89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSV--SEVTDKLGLHSLRQRRWYIQAACATSGQGLY  166 (180)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  166 (180)
                      +|||+++++++.....|+....... ....|+++|+||+|+......  ++...     .++..++++++|||++|.||+
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~~k~d~~~~~~v~~~~~~~-----~~~~~~~~~~e~Sak~g~gi~  158 (170)
T d2g6ba1          85 LLYDVTNKASFDNIQAWLTEIHEYA-QHDVALMLLGNKVDSAHERVVKREDGEK-----LAKEYGLPFMETSAKTGLNVD  158 (170)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECCSTTSCCCSCHHHHHH-----HHHHHTCCEEECCTTTCTTHH
T ss_pred             EEecCCcccchhhhhhhhhhhhhcc-CCCceEEEEEeeechhhcccccHHHHHH-----HHHHcCCEEEEEeCCCCcCHH
Confidence            9999999999999999988776543 357899999999998875432  22221     123445689999999999999


Q ss_pred             HHHHHHHHHhhh
Q 030289          167 EGLDWLSSNVSA  178 (180)
Q Consensus       167 ~~~~~l~~~~~~  178 (180)
                      ++|+++++.+.+
T Consensus       159 e~f~~l~~~i~k  170 (170)
T d2g6ba1         159 LAFTAIAKELKR  170 (170)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCC
Confidence            999999998764

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-34  Score=190.78  Aligned_cols=158  Identities=17%  Similarity=0.363  Sum_probs=123.9

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCCc-cccccccc--eeEEEEEEc--CeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIG--FNVETVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV   90 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~--~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (180)
                      -+||+|+|++|||||||++++.++.+ ..+.++.+  .....+..+  .+.+.+||++|++.+...+..+++++|++++|
T Consensus         4 ~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~v   83 (175)
T d2f9la1           4 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLV   83 (175)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEEE
Confidence            48999999999999999999998873 44445554  334444554  46889999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHh-HHHhHhCCCccCCcceEEEEeeccCCCChHHHH
Q 030289           91 VDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVS-EVTDKLGLHSLRQRRWYIQAACATSGQGLYEGL  169 (180)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  169 (180)
                      ||.++++++.....|+..+.... .+++|+++|+||+|+.+..... +.....    ....+.++++|||++|.|++++|
T Consensus        84 ~d~~~~~S~~~~~~~~~~i~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~----~~~~~~~~~e~Sa~~g~~i~e~f  158 (175)
T d2f9la1          84 YDIAKHLTYENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTDEARAF----AEKNNLSFIETSALDSTNVEEAF  158 (175)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHH----HHHTTCEEEECCTTTCTTHHHHH
T ss_pred             EECCCcccchhHHHHHHHHHHhc-CCCCcEEEEEeeecccccccchHHHHHHh----hcccCceEEEEecCCCcCHHHHH
Confidence            99999999999999998886543 3679999999999997643221 111111    12344689999999999999999


Q ss_pred             HHHHHHhhh
Q 030289          170 DWLSSNVSA  178 (180)
Q Consensus       170 ~~l~~~~~~  178 (180)
                      .++++.+.+
T Consensus       159 ~~l~~~i~~  167 (175)
T d2f9la1         159 KNILTEIYR  167 (175)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988643

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-33  Score=192.09  Aligned_cols=158  Identities=22%  Similarity=0.385  Sum_probs=128.0

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEE--EEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEE
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVET--VEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF   89 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   89 (180)
                      ..+||+|+|++|||||||+++|..+. ...+.+|.+.....  +..  .++.+.+|||||++++..++..+++++|++++
T Consensus         5 ~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~   84 (194)
T d2bcgy1           5 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIII   84 (194)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence            35899999999999999999999887 55556777755443  433  46789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCH--hHHHhHhCCCccCCcceEEEEeeccCCCChHH
Q 030289           90 VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSV--SEVTDKLGLHSLRQRRWYIQAACATSGQGLYE  167 (180)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  167 (180)
                      |||+++++++.....|+..+... ...+.|+++|+||+|+.+....  ++....     ....++.+++|||++|.||++
T Consensus        85 v~d~t~~~s~~~~~~~~~~~~~~-~~~~~~iilv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~e~SAk~g~gi~e  158 (194)
T d2bcgy1          85 VYDVTDQESFNGVKMWLQEIDRY-ATSTVLKLLVGNKCDLKDKRVVEYDVAKEF-----ADANKMPFLETSALDSTNVED  158 (194)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHH-----HHHTTCCEEECCTTTCTTHHH
T ss_pred             EEeCcchhhhhhHhhhhhhhhhc-ccCCceEEEEEeccccccccchhHHHHhhh-----hhccCcceEEEecCcCccHHH
Confidence            99999999999999888877543 3468999999999998764332  221111     123456799999999999999


Q ss_pred             HHHHHHHHhhh
Q 030289          168 GLDWLSSNVSA  178 (180)
Q Consensus       168 ~~~~l~~~~~~  178 (180)
                      +|+++++.+.+
T Consensus       159 ~f~~l~~~i~~  169 (194)
T d2bcgy1         159 AFLTMARQIKE  169 (194)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998765

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.2e-34  Score=190.27  Aligned_cols=159  Identities=21%  Similarity=0.379  Sum_probs=129.5

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeE--EEEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV--ETVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV   90 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (180)
                      .+||+++|++|||||||+++|.++++ ..+.++.+...  ..+..  ..+.+.+|||||++++..++..+++++|++++|
T Consensus         7 ~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v   86 (177)
T d1x3sa1           7 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILV   86 (177)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEE
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            58999999999999999999998884 44445555433  34444  456899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC-CHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHH
Q 030289           91 VDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM-SVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGL  169 (180)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  169 (180)
                      ||++++.+++....|+..+.........|+++++||+|..... ..++..+     .++..++++++|||++|+||+++|
T Consensus        87 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~-----~~~~~~~~~~e~Sa~tg~gv~e~f  161 (177)
T d1x3sa1          87 YDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLK-----FARKHSMLFIEASAKTCDGVQCAF  161 (177)
T ss_dssp             EETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHH-----HHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             EECCCccccccchhhhhhhcccccccceeeEEEeeccccccccccHHHHHH-----HHHHCCCEEEEEeCCCCCCHHHHH
Confidence            9999999999999999998776666779999999999986533 2222221     233455789999999999999999


Q ss_pred             HHHHHHhhhc
Q 030289          170 DWLSSNVSAK  179 (180)
Q Consensus       170 ~~l~~~~~~~  179 (180)
                      +++++.+.+.
T Consensus       162 ~~l~~~l~~~  171 (177)
T d1x3sa1         162 EELVEKIIQT  171 (177)
T ss_dssp             HHHHHHHHTS
T ss_pred             HHHHHHHccC
Confidence            9999988764

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9e-34  Score=188.22  Aligned_cols=159  Identities=25%  Similarity=0.405  Sum_probs=124.4

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEE--EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE--TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV   90 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (180)
                      -+||+++|++|||||||+++|+.++ ...+.+|.+..+.  .+..  ..+.+.+|||||++.+..++..++++++++++|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            3799999999999999999999988 4555677775554  3443  356788999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHH
Q 030289           91 VDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLD  170 (180)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  170 (180)
                      ||.+++++++.+..|+....... ....|++++++|.|+.......+....+    +...++++++|||++|+||+++|+
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~i~~~~k~d~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~~v~e~f~  156 (166)
T d1g16a_          82 YDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEAL----AKELGIPFIESSAKNDDNVNEIFF  156 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHHHH----HHHHTCCEEECBTTTTBSHHHHHH
T ss_pred             EECCCccCHHHHHhhhhhhhccc-cCcceeeeecchhhhhhhhhhHHHHHHH----HHhcCCeEEEECCCCCCCHHHHHH
Confidence            99999999999988877776543 4578899999999987754433333222    223467899999999999999999


Q ss_pred             HHHHHhhhc
Q 030289          171 WLSSNVSAK  179 (180)
Q Consensus       171 ~l~~~~~~~  179 (180)
                      ++++.+.++
T Consensus       157 ~l~~~i~~k  165 (166)
T d1g16a_         157 TLAKLIQEK  165 (166)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhc
Confidence            999998775

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-33  Score=188.12  Aligned_cols=160  Identities=16%  Similarity=0.172  Sum_probs=122.7

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCC--cccccccccee--EEEEEE--cCeEEEEEEcCCCCCC-hhhHHhhccccCEE
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGE--IVTTIPTIGFN--VETVEY--KNVSFTVWDVGGQDKI-RPLWRHYFQNTHGL   87 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~--~~~~~~t~~~~--~~~~~~--~~~~~~i~D~~G~~~~-~~~~~~~~~~~~~~   87 (180)
                      ..|||+++|++|||||||+++|++..  .....+|++..  ...+..  ....+.+||+++.... +..+..+++++|++
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~~~~~~~~~~~~~   81 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAY   81 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeecccccccccccccccccccccee
Confidence            46899999999999999999998766  33444555543  344444  4567789998764322 23567789999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCCh
Q 030289           88 IFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGL  165 (180)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  165 (180)
                      ++|||++++.+++.+..|+..+......+++|+++|+||+|+.....  .++..     ..+...+++|++|||++|.||
T Consensus        82 ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~-----~~a~~~~~~~~e~Sak~g~~i  156 (172)
T d2g3ya1          82 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGR-----ACAVVFDCKFIETSAAVQHNV  156 (172)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHH-----HHHHHHTCEEEECBTTTTBSH
T ss_pred             eeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHH-----HHHHHcCCeEEEEeCCCCcCH
Confidence            99999999999999999999887766667899999999999876432  33321     123345678999999999999


Q ss_pred             HHHHHHHHHHhhhc
Q 030289          166 YEGLDWLSSNVSAK  179 (180)
Q Consensus       166 ~~~~~~l~~~~~~~  179 (180)
                      +++|..+++.+..+
T Consensus       157 ~~~f~~l~~~i~~r  170 (172)
T d2g3ya1         157 KELFEGIVRQVRLR  170 (172)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc
Confidence            99999999998765

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9e-34  Score=191.03  Aligned_cols=164  Identities=18%  Similarity=0.198  Sum_probs=126.5

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEE-EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE-TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF   89 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   89 (180)
                      .+.+||+++|++|||||||+++|+.+. ...+.+|++.... .+..  ....+.+||++|++.+...+..+++++|++++
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   82 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeeceeeeeeccCcceEEEeecccccccchhhhhhcccccceeee
Confidence            357899999999999999999999888 5556778774433 3333  45678999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCC---------ccCCc-ceEEEEeec
Q 030289           90 VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLH---------SLRQR-RWYIQAACA  159 (180)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~---------~~~~~-~~~~~~~Sa  159 (180)
                      |||++++++++.+..|+....... ..++|+++|+||+|+..+....+........         .+++. ..+|++|||
T Consensus        83 v~d~~~~~sf~~i~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SA  161 (183)
T d1mh1a_          83 CFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  161 (183)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHH-STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             eeccchHHHHHHHHHHHHHHHHHh-CCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCC
Confidence            999999999999987666555443 4578999999999986643221111111111         11112 258999999


Q ss_pred             cCCCChHHHHHHHHHHhhh
Q 030289          160 TSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       160 ~~~~~i~~~~~~l~~~~~~  178 (180)
                      ++|.||+++|..+++.+.+
T Consensus       162 k~~~~V~e~F~~l~~~il~  180 (183)
T d1mh1a_         162 LTQRGLKTVFDEAIRAVLC  180 (183)
T ss_dssp             TTCTTHHHHHHHHHHHHSC
T ss_pred             CCCcCHHHHHHHHHHHHcC
Confidence            9999999999999998765

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.2e-33  Score=186.99  Aligned_cols=160  Identities=16%  Similarity=0.270  Sum_probs=113.2

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEEEEEE-----cCeEEEEEEcCCCCCChhhHHhhccccCEEEE
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVETVEY-----KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF   89 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~~~~~-----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   89 (180)
                      -+||+++|++|||||||+++|.++++ ..+.+|.+........     ....+.+||++|++.+...+..+++.++++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            47999999999999999999998884 4455666544433333     34678999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhccc---ccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCc-ceEEEEeeccCCC
Q 030289           90 VVDSNDRERIGEAKDELHRMLSED---ELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQR-RWYIQAACATSGQ  163 (180)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~  163 (180)
                      |||++++.+++.+..|+..+....   ...++|+++|+||+|+.+...  ..+...++.    ... ..+|++|||++|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~----~~~~~~~~~e~SA~~g~  157 (175)
T d1ky3a_          82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELA----KSLGDIPLFLTSAKNAI  157 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHH----HHTTSCCEEEEBTTTTB
T ss_pred             EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHH----HHcCCCeEEEEeCCCCc
Confidence            999999999999999988876432   335789999999999875322  111111111    111 2579999999999


Q ss_pred             ChHHHHHHHHHHhhhc
Q 030289          164 GLYEGLDWLSSNVSAK  179 (180)
Q Consensus       164 ~i~~~~~~l~~~~~~~  179 (180)
                      ||+++|+++++.+.++
T Consensus       158 gv~e~f~~l~~~~l~~  173 (175)
T d1ky3a_         158 NVDTAFEEIARSALQQ  173 (175)
T ss_dssp             SHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhc
Confidence            9999999999987664

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.4e-33  Score=188.34  Aligned_cols=160  Identities=16%  Similarity=0.271  Sum_probs=129.0

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEEEEE----cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV   91 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (180)
                      +||+++|.+|||||||+++|++++ ...+.||.+........    ..+.+.+||++|+..+...+..++..+|++++|+
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   82 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVF   82 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEee
Confidence            799999999999999999999888 55667888876655544    4568999999999999888999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhccc---ccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289           92 DSNDRERIGEAKDELHRMLSED---ELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG  168 (180)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~---~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  168 (180)
                      |.+++.++..+..|+..+....   ...++|+++|+||+|+.+.....+....+.   ....++++++|||++|.||+++
T Consensus        83 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~---~~~~~~~~~e~Sak~~~gI~e~  159 (184)
T d1vg8a_          83 DVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWC---YSKNNIPYFETSAKEAINVEQA  159 (184)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHH---HHTTSCCEEECBTTTTBSHHHH
T ss_pred             cccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHH---HHhcCCeEEEEcCCCCcCHHHH
Confidence            9999999999999987775432   345689999999999876443222222211   1233568999999999999999


Q ss_pred             HHHHHHHhhhc
Q 030289          169 LDWLSSNVSAK  179 (180)
Q Consensus       169 ~~~l~~~~~~~  179 (180)
                      |+++++.+.++
T Consensus       160 f~~l~~~i~~~  170 (184)
T d1vg8a_         160 FQTIARNALKQ  170 (184)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            99999987654

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=100.00  E-value=1.5e-31  Score=177.43  Aligned_cols=166  Identities=58%  Similarity=1.023  Sum_probs=150.1

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECC
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSN   94 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~   94 (180)
                      +.+||+++|++|||||||+|++.++++....+|.+........+++.+.+||.+|...........+..++++++++|+.
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSC   83 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETT
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCcceecccceeeeeeccCceEEEEeeccccccccccchhhhhhhhhhhhhhhhh
Confidence            46899999999999999999999999887788999888888889999999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHH
Q 030289           95 DRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSS  174 (180)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  174 (180)
                      +..++.....++............|+++++||.|+.......++...+....+...+++|++|||++|.||+++|++|++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~~~l~~  163 (169)
T d1upta_          84 DRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVE  163 (169)
T ss_dssp             CCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             hcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            98888888887777766666678999999999999988877788888777777778899999999999999999999999


Q ss_pred             HhhhcC
Q 030289          175 NVSAKG  180 (180)
Q Consensus       175 ~~~~~~  180 (180)
                      .+.+++
T Consensus       164 ~l~~k~  169 (169)
T d1upta_         164 TLKSRQ  169 (169)
T ss_dssp             HHHTCC
T ss_pred             HHHhCC
Confidence            998874

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.7e-33  Score=186.04  Aligned_cols=158  Identities=16%  Similarity=0.218  Sum_probs=124.0

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeE-EEEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV-ETVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV   91 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~-~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (180)
                      ++||+++|++|||||||+++++.+. ...+.||.+... ..+..  ..+.+.+||++|++.+...++.+++++|++++||
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   81 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICF   81 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccccccccccchhhhhhhhheee
Confidence            5799999999999999999999988 445667776333 33333  4578899999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC--------------CHhHHHhHhCCCccCCcc-eEEEE
Q 030289           92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM--------------SVSEVTDKLGLHSLRQRR-WYIQA  156 (180)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~--------------~~~~~~~~~~~~~~~~~~-~~~~~  156 (180)
                      |++++++|+.+..|+....... ..+.|+++|+||+|+....              +.++...     .+++.+ .+|++
T Consensus        82 d~~~~~Sf~~~~~~~~~~~~~~-~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~-----~a~~~~~~~y~E  155 (179)
T d1m7ba_          82 DISRPETLDSVLKKWKGEIQEF-CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN-----MAKQIGAATYIE  155 (179)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHH-CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH-----HHHHHTCSEEEE
T ss_pred             ecccCCCHHHHHHHHHHHHhcc-CCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHH-----HHHHhCCCeEEE
Confidence            9999999999988777665443 3589999999999986421              1111111     111222 47999


Q ss_pred             eeccCCCC-hHHHHHHHHHHhhhc
Q 030289          157 ACATSGQG-LYEGLDWLSSNVSAK  179 (180)
Q Consensus       157 ~Sa~~~~~-i~~~~~~l~~~~~~~  179 (180)
                      |||++|.| |+++|+.+++.+.++
T Consensus       156 ~SAk~~~n~i~~~F~~~~~~~l~k  179 (179)
T d1m7ba_         156 CSALQSENSVRDIFHVATLACVNK  179 (179)
T ss_dssp             CBTTTBHHHHHHHHHHHHHHHHTC
T ss_pred             EeCCCCCcCHHHHHHHHHHHHhcC
Confidence            99999985 999999999998764

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-32  Score=181.16  Aligned_cols=161  Identities=16%  Similarity=0.299  Sum_probs=124.5

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEE--EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEE
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE--TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGL   87 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   87 (180)
                      +.+-|||+|+|++|||||||+++|..+. ...+.+|++....  .+..  ..+.+.+||++|+......+..++..++++
T Consensus         3 ~~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   82 (174)
T d1wmsa_           3 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   82 (174)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceE
Confidence            3567899999999999999999999888 4455566665433  3333  346789999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhcc---cccCCCeEEEEEecCCCCCC-CCHhHHHhHhCCCccCC-cceEEEEeeccCC
Q 030289           88 IFVVDSNDRERIGEAKDELHRMLSE---DELREAVLLVFANKQDLPNA-MSVSEVTDKLGLHSLRQ-RRWYIQAACATSG  162 (180)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~iiiv~nK~D~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~  162 (180)
                      ++++|.+++.+++.+..|+..+...   ....+.|+++|+||+|+.+. ...++....     +++ ..++|++|||++|
T Consensus        83 i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~-----~~~~~~~~~~e~Sak~~  157 (174)
T d1wmsa_          83 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAW-----CRDNGDYPYFETSAKDA  157 (174)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHH-----HHHTTCCCEEECCTTTC
T ss_pred             EEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHHH-----HHHcCCCeEEEEcCCCC
Confidence            9999999999999999998777543   23357899999999998653 233332221     111 2357999999999


Q ss_pred             CChHHHHHHHHHHhhh
Q 030289          163 QGLYEGLDWLSSNVSA  178 (180)
Q Consensus       163 ~~i~~~~~~l~~~~~~  178 (180)
                      .||+++|+++++.+.+
T Consensus       158 ~gI~e~f~~l~~~il~  173 (174)
T d1wmsa_         158 TNVAAAFEEAVRRVLA  173 (174)
T ss_dssp             TTHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHHhc
Confidence            9999999999998864

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=8.3e-32  Score=179.89  Aligned_cols=156  Identities=13%  Similarity=0.164  Sum_probs=119.8

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEE-EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE-TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV   90 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (180)
                      .+.+||+++|++|||||||++++.++.+..+.+|....+. .+..  ..+.+.+||++|+..+     .+++.+|++++|
T Consensus         3 ~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~ilV   77 (175)
T d2bmja1           3 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIFV   77 (175)
T ss_dssp             CCEEEEEEECCTTTTHHHHHHHHHHSCCCCCCCSSCEEEEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEEEE
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHhCCCCCcCCccceeEEEEeecCceEEEEEEeeccccccc-----ccccccceeEEE
Confidence            3579999999999999999999999987766676665443 3445  4478999999998864     367889999999


Q ss_pred             EECCChhhHHHHHHHHHHHhcc--cccCCCeEEEEEecCCCCCCC----CHhHHHhHhCCCccCCcceEEEEeeccCCCC
Q 030289           91 VDSNDRERIGEAKDELHRMLSE--DELREAVLLVFANKQDLPNAM----SVSEVTDKLGLHSLRQRRWYIQAACATSGQG  164 (180)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~iiiv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  164 (180)
                      ||++++++++.+..|+..+...  .....+|+++|+||+|+....    ..++.. .+.   ....+++|++|||++|.|
T Consensus        78 fd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~-~~~---~~~~~~~~~e~SAk~~~~  153 (175)
T d2bmja1          78 FSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARAR-ALC---ADMKRCSYYETCATYGLN  153 (175)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHH-HHH---HTSTTEEEEEEBTTTTBT
T ss_pred             eecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHH-HHH---HHhCCCeEEEeCCCCCcC
Confidence            9999999999999888776432  234678999999999975422    122222 111   123457899999999999


Q ss_pred             hHHHHHHHHHHhhh
Q 030289          165 LYEGLDWLSSNVSA  178 (180)
Q Consensus       165 i~~~~~~l~~~~~~  178 (180)
                      |+++|..+++.+.+
T Consensus       154 v~~~F~~l~~~i~~  167 (175)
T d2bmja1         154 VDRVFQEVAQKVVT  167 (175)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988764

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.98  E-value=1.3e-32  Score=182.31  Aligned_cols=154  Identities=20%  Similarity=0.347  Sum_probs=120.5

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEE--EEEE--cCeEEEEEEcCCCCCChh-hHHhhccccCEEE
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE--TVEY--KNVSFTVWDVGGQDKIRP-LWRHYFQNTHGLI   88 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~-~~~~~~~~~~~~i   88 (180)
                      +-+||+++|++|||||||+++|..++ ...+.+|.+....  ....  ....+.+||++|...+.. .++.+++++|+++
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence            35899999999999999999999888 4445566654443  3333  567899999999876654 4778999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC--CHhHHHhHhCCCccCCcceEEEEeeccC---CC
Q 030289           89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM--SVSEVTDKLGLHSLRQRRWYIQAACATS---GQ  163 (180)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~  163 (180)
                      +|||++++++++.+..|+..+.......++|+++|+||+|+.++.  +.++..+     .++..++++++|||++   ++
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~e~SAkt~~~~~  155 (165)
T d1z06a1          81 FVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQK-----FADTHSMPLFETSAKNPNDND  155 (165)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHH-----HHHHTTCCEEECCSSSGGGGS
T ss_pred             EEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHH-----HHHHCCCEEEEEecccCCcCc
Confidence            999999999999999999988776666789999999999987643  2333221     2234456799999987   56


Q ss_pred             ChHHHHHHHH
Q 030289          164 GLYEGLDWLS  173 (180)
Q Consensus       164 ~i~~~~~~l~  173 (180)
                      ||+++|.+|+
T Consensus       156 ~V~e~F~~lA  165 (165)
T d1z06a1         156 HVEAIFMTLA  165 (165)
T ss_dssp             CHHHHHHHHC
T ss_pred             CHHHHHHHhC
Confidence            9999998873

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.1e-30  Score=171.12  Aligned_cols=157  Identities=37%  Similarity=0.631  Sum_probs=139.9

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChh
Q 030289           18 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRE   97 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~   97 (180)
                      ||+++|++|||||||+|+|.++.+....||.+.........+....+||++|...+...+..++..++++++++|.++..
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~   81 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPE   81 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEETTCGG
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCeeeceeeEeEEEeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccccchh
Confidence            79999999999999999999999888889999999998889999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCcc-------CCcceEEEEeeccCCCChHHHHH
Q 030289           98 RIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSL-------RQRRWYIQAACATSGQGLYEGLD  170 (180)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~Sa~~~~~i~~~~~  170 (180)
                      ++.....++..........+.|+++++||.|+.......++.+.+.....       ....+++++|||++|+||+|+|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv~e~~~  161 (166)
T d2qtvb1          82 RFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQ  161 (166)
T ss_dssp             GHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTBSHHHHHH
T ss_pred             hhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCCCHHHHHH
Confidence            99888888888877777788999999999999887777777776654433       24567899999999999999999


Q ss_pred             HHHH
Q 030289          171 WLSS  174 (180)
Q Consensus       171 ~l~~  174 (180)
                      ||.+
T Consensus       162 ~l~~  165 (166)
T d2qtvb1         162 WLSQ  165 (166)
T ss_dssp             HHTT
T ss_pred             HHhC
Confidence            9975

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.97  E-value=1.8e-29  Score=169.66  Aligned_cols=165  Identities=30%  Similarity=0.596  Sum_probs=133.1

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV   91 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (180)
                      +..++.||+++|++|||||||+++|.++.+....++.+.....+...+..+..||++++..+...+..+.+..+++++++
T Consensus         9 ~~~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (186)
T d1f6ba_           9 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLV   88 (186)
T ss_dssp             CTTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEE
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHhCCCCcceecccccceeEEEecccccccccccchhhhhhHHhhhhcccceeeeee
Confidence            34778999999999999999999999988777778888888888889999999999999999888999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCC------------ccCCcceEEEEeec
Q 030289           92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLH------------SLRQRRWYIQAACA  159 (180)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~Sa  159 (180)
                      |..+...+.....++..........+.|+++++||.|+.......++.+.+...            .....++++++|||
T Consensus        89 d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA  168 (186)
T d1f6ba_          89 DCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV  168 (186)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBT
T ss_pred             eccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEEEEEeC
Confidence            999998888888777777666667889999999999998877766665544322            22345678999999


Q ss_pred             cCCCChHHHHHHHHHHh
Q 030289          160 TSGQGLYEGLDWLSSNV  176 (180)
Q Consensus       160 ~~~~~i~~~~~~l~~~~  176 (180)
                      ++|+||+|+|+||.+.+
T Consensus       169 ~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         169 LKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             TTTBSHHHHHHHHHTTC
T ss_pred             CCCCCHHHHHHHHHHhh
Confidence            99999999999999875

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1.4e-29  Score=172.30  Aligned_cols=164  Identities=22%  Similarity=0.419  Sum_probs=130.1

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECC
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSN   94 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~   94 (180)
                      +++||+++|+.|||||||+++|..+.+ .+.||+|+...++......+++||++|++.++..+..++++++++++++|.+
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~-~~~pTiG~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~~~   79 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHG-SGVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALS   79 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTS-SCCCCCSCEEEEEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEEEGG
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCC-CCCceeeEEEEEEeccceeeeeccccccccccccccccccccceeeEeeecc
Confidence            478999999999999999999987775 4679999999999999999999999999999999999999999999999987


Q ss_pred             Chh----------hHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC------------------CCHhH----H-HhH
Q 030289           95 DRE----------RIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA------------------MSVSE----V-TDK  141 (180)
Q Consensus        95 ~~~----------~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~------------------~~~~~----~-~~~  141 (180)
                      +..          .+.+...++..++......+.|+++++||+|+...                  .+...    + ...
T Consensus        80 ~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f  159 (200)
T d2bcjq2          80 EYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMF  159 (200)
T ss_dssp             GGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHHHHH
T ss_pred             chhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHHHHHH
Confidence            643          34444444555555555678999999999996431                  11111    1 112


Q ss_pred             hCCCccCCcceEEEEeeccCCCChHHHHHHHHHHhhhc
Q 030289          142 LGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       142 ~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  179 (180)
                      ........+.+.+|+|||++|.||+++|+.+.+.+.++
T Consensus       160 ~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~  197 (200)
T d2bcjq2         160 VDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL  197 (200)
T ss_dssp             HTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHH
Confidence            23333445678899999999999999999999888753

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=3.7e-29  Score=169.50  Aligned_cols=161  Identities=23%  Similarity=0.431  Sum_probs=125.0

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECC
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSN   94 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~   94 (180)
                      +.+||+++|+.|||||||+++|....    .||.++....+......+.+||++|++.++..+..+++.++++++|+|.+
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d~~   76 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIH----EAGTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALS   76 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHH----SCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCC----CCCccEEEEEEEeeeeeeeeeccccccccccchhhcccCCceeeeEEeec
Confidence            46899999999999999999997543    46777778888999999999999999999999999999999999999998


Q ss_pred             ChhhH----------HHHHHHHHHHhcccccCCCeEEEEEecCCCCCC-----------------CCHhH----HHhH-h
Q 030289           95 DRERI----------GEAKDELHRMLSEDELREAVLLVFANKQDLPNA-----------------MSVSE----VTDK-L  142 (180)
Q Consensus        95 ~~~~~----------~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~-----------------~~~~~----~~~~-~  142 (180)
                      +.+++          .....++..++........|+++++||+|+...                 ....+    +... .
T Consensus        77 ~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~  156 (195)
T d1svsa1          77 DYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFE  156 (195)
T ss_dssp             GGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHHH
T ss_pred             ccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHHHHHH
Confidence            76543          344455556666666678999999999985321                 11111    1111 1


Q ss_pred             CC-CccCCcceEEEEeeccCCCChHHHHHHHHHHhhhc
Q 030289          143 GL-HSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       143 ~~-~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  179 (180)
                      .. .......+++++|||+++.||+++|+.+.+.+.++
T Consensus       157 ~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~  194 (195)
T d1svsa1         157 DLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN  194 (195)
T ss_dssp             TTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence            11 22244577899999999999999999999888764

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=1.3e-27  Score=162.60  Aligned_cols=163  Identities=25%  Similarity=0.420  Sum_probs=122.5

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECC
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSN   94 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~   94 (180)
                      +-+||+++|++|||||||++++.  ....+.||+|+...++..+...+.+||++|++.++..+..++++++++++++|.+
T Consensus         1 r~iKivllG~~~vGKTsll~r~~--f~~~~~pTiG~~~~~~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~~~~   78 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQMR--IIHGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSS   78 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH--HHHSCCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETT
T ss_pred             CeEEEEEECCCCCCHHHHHHHHh--cCCCCCCeeeeEEEEEeeeeeeeeeecccceeeecccccccccccceeEEEEEcC
Confidence            45899999999999999999993  3456679999999999999999999999999999999999999999999999988


Q ss_pred             Ch----------hhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC------------------CCHhHHH----hHh
Q 030289           95 DR----------ERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA------------------MSVSEVT----DKL  142 (180)
Q Consensus        95 ~~----------~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~------------------~~~~~~~----~~~  142 (180)
                      +.          ..++....++..++......++|+++++||+|+.++                  .+.+...    ..+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f  158 (200)
T d1zcba2          79 EFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECF  158 (200)
T ss_dssp             CTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHH
T ss_pred             CcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHHHHHH
Confidence            64          356677778888888777789999999999996431                  1111111    111


Q ss_pred             -C-CCccCCcceEEEEeeccCCCChHHHHHHHHHHhhhc
Q 030289          143 -G-LHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       143 -~-~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  179 (180)
                       . ......+.+.+++|||+++.||+++|+.+.+.+.++
T Consensus       159 ~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~  197 (200)
T d1zcba2         159 RGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD  197 (200)
T ss_dssp             HTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHH
Confidence             1 111234567788999999999999999998877653

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.95  E-value=7.1e-27  Score=156.32  Aligned_cols=154  Identities=16%  Similarity=0.068  Sum_probs=108.3

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCCc--cccc--cccceeEEEEEEcCeEEEEEEcCCCCCChh--------hHHhhcccc
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGEI--VTTI--PTIGFNVETVEYKNVSFTVWDVGGQDKIRP--------LWRHYFQNT   84 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~~--~~~~--~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~   84 (180)
                      -+|+|+|.+|||||||+|+|++.+.  ....  .|...........+..+.+|||||......        ....++.++
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~a   85 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADV   85 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeeeeeeeecccccccccccccchhcccccccccccc
Confidence            3699999999999999999998762  2222  244556666777889999999999765422        234456789


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCC
Q 030289           85 HGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQG  164 (180)
Q Consensus        85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  164 (180)
                      |++++|+|++++..  ....++...+... ..+.|+++|+||+|+.+..  ++..+.....   .....++++||++|.|
T Consensus        86 d~il~v~D~~~~~~--~~~~~i~~~l~~~-~~~~piilv~NK~Dl~~~~--~~~~~~~~~~---~~~~~~~~iSA~~~~g  157 (178)
T d1wf3a1          86 NAVVWVVDLRHPPT--PEDELVARALKPL-VGKVPILLVGNKLDAAKYP--EEAMKAYHEL---LPEAEPRMLSALDERQ  157 (178)
T ss_dssp             SEEEEEEETTSCCC--HHHHHHHHHHGGG-TTTSCEEEEEECGGGCSSH--HHHHHHHHHT---STTSEEEECCTTCHHH
T ss_pred             cceeeeechhhhhc--ccccchhhheecc-ccchhhhhhhcccccccCH--HHHHHHHHhh---cccCceEEEecCCCCC
Confidence            99999999986543  3334444444332 3468999999999986632  2222221111   0123688999999999


Q ss_pred             hHHHHHHHHHHhhh
Q 030289          165 LYEGLDWLSSNVSA  178 (180)
Q Consensus       165 i~~~~~~l~~~~~~  178 (180)
                      +++++++|.+.+.+
T Consensus       158 i~~L~~~i~~~lpe  171 (178)
T d1wf3a1         158 VAELKADLLALMPE  171 (178)
T ss_dssp             HHHHHHHHHTTCCB
T ss_pred             HHHHHHHHHHhCCC
Confidence            99999999998754

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=1.4e-26  Score=152.39  Aligned_cols=149  Identities=18%  Similarity=0.208  Sum_probs=109.8

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCCc--ccccc--ccceeEEEEEEcCeEEEEEEcCCCCCCh--------hhHHhhccc
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNVSFTVWDVGGQDKIR--------PLWRHYFQN   83 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~~~   83 (180)
                      .+||+++|++|||||||+|+|++.+.  ....+  +.......+...+..+.+||+||.....        .....++..
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   80 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQ   80 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCceeeeccccccccccccchhHHHHHHHHHHHh
Confidence            37999999999999999999997762  22222  4445556777789999999999965442        124455678


Q ss_pred             cCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCC
Q 030289           84 THGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQ  163 (180)
Q Consensus        84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  163 (180)
                      +|++++++|..+...++....|...+...  ..+.|+++|+||+|+..+...          .....+.+++++||++|.
T Consensus        81 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~iilv~NK~Dl~~~~~~----------~~~~~~~~~~~iSAk~~~  148 (161)
T d2gj8a1          81 ADRVLFMVDGTTTDAVDPAEIWPEFIARL--PAKLPITVVRNKADITGETLG----------MSEVNGHALIRLSARTGE  148 (161)
T ss_dssp             CSEEEEEEETTTCCCCSHHHHCHHHHHHS--CTTCCEEEEEECHHHHCCCCE----------EEEETTEEEEECCTTTCT
T ss_pred             ccccceeeccccccchhhhhhhhhhhhhc--ccccceeeccchhhhhhhHHH----------HHHhCCCcEEEEECCCCC
Confidence            99999999998877665565554443322  246899999999997653211          112235689999999999


Q ss_pred             ChHHHHHHHHHHh
Q 030289          164 GLYEGLDWLSSNV  176 (180)
Q Consensus       164 ~i~~~~~~l~~~~  176 (180)
                      ||++++++|.+.+
T Consensus       149 gi~~L~~~l~~~l  161 (161)
T d2gj8a1         149 GVDVLRNHLKQSM  161 (161)
T ss_dssp             THHHHHHHHHHHC
T ss_pred             CHHHHHHHHHhhC
Confidence            9999999998864

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=6.5e-27  Score=161.47  Aligned_cols=162  Identities=24%  Similarity=0.394  Sum_probs=129.0

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEEC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDS   93 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   93 (180)
                      ++.+||+++|+.|||||||++++..+.   ..||+|+....+..+++.+.+||++|+..++..|..++++++++++++|.
T Consensus         4 k~~~KilllG~~~vGKTsll~~~~~~~---~~pTiG~~~~~~~~~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~d~   80 (221)
T d1azta2           4 RATHRLLLLGAGESGKSTIVKQMRILH---VVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVAS   80 (221)
T ss_dssp             HHSEEEEEECSTTSSHHHHHHHHHHHH---CCCCCSCEEEEEEETTEEEEEEECCCSTTTTTGGGGGCTTCSEEEEEEET
T ss_pred             hhcCEEEEECCCCCCHHHHHHHHhcCC---cCCCCCeEEEEEEECcEEEEEEecCccceeccchhhhcccccceEEEEEc
Confidence            457899999999999999999997543   45899999999999999999999999999999999999999999999998


Q ss_pred             CCh----------hhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC------CCHh---------------------
Q 030289           94 NDR----------ERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA------MSVS---------------------  136 (180)
Q Consensus        94 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~------~~~~---------------------  136 (180)
                      ++.          ..+.+....+..++......++|+++++||+|+.++      ....                     
T Consensus        81 s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~  160 (221)
T d1azta2          81 SSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGE  160 (221)
T ss_dssp             TGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCCTTC
T ss_pred             cccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccccccCCC
Confidence            753          456667777888888877789999999999997431      1111                     


Q ss_pred             -----H--------HHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHHhhh
Q 030289          137 -----E--------VTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       137 -----~--------~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  178 (180)
                           .        +...........+.+..++|||.+..||+.+|+.+.+.+.+
T Consensus       161 ~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~  215 (221)
T d1azta2         161 DPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQR  215 (221)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHH
Confidence                 0        11111122223455778999999999999999988776654

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=8.2e-26  Score=151.32  Aligned_cols=154  Identities=23%  Similarity=0.294  Sum_probs=106.1

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCCc-cc--cccccceeEEEEEE-cCeEEEEEEcCCCCC-------ChhhHHhhccccCE
Q 030289           18 RILMVGLDAAGKTTILYKLKLGEI-VT--TIPTIGFNVETVEY-KNVSFTVWDVGGQDK-------IRPLWRHYFQNTHG   86 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~~-~~--~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~-------~~~~~~~~~~~~~~   86 (180)
                      +|+|+|.+|||||||+|+|++... ..  ...|.......... .+..+.+|||||...       ........+..+++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~   82 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV   82 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhh
Confidence            599999999999999999997662 11  12244444443333 567899999999432       22234455678999


Q ss_pred             EEEEEECCCh--hhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCC
Q 030289           87 LIFVVDSNDR--ERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQG  164 (180)
Q Consensus        87 ~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  164 (180)
                      +++++|....  ..+.....++.....  ...++|+++|+||+|+..+....++.+.+.     ..+.+++++||++|.|
T Consensus        83 ~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~-----~~~~~~~~iSA~tg~g  155 (180)
T d1udxa2          83 LLYVLDAADEPLKTLETLRKEVGAYDP--ALLRRPSLVALNKVDLLEEEAVKALADALA-----REGLAVLPVSALTGAG  155 (180)
T ss_dssp             EEEEEETTSCHHHHHHHHHHHHHHHCH--HHHHSCEEEEEECCTTSCHHHHHHHHHHHH-----TTTSCEEECCTTTCTT
T ss_pred             hhhhcccccccccchhhhhhhhhcccc--ccchhhhhhhhhhhhhhhHHHHHHHHHHHH-----hcCCeEEEEEcCCCCC
Confidence            9999998643  233333344433211  224578999999999987554444444433     2356899999999999


Q ss_pred             hHHHHHHHHHHhhh
Q 030289          165 LYEGLDWLSSNVSA  178 (180)
Q Consensus       165 i~~~~~~l~~~~~~  178 (180)
                      |+++++.|.+.+.+
T Consensus       156 id~L~~~i~~~l~~  169 (180)
T d1udxa2         156 LPALKEALHALVRS  169 (180)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999888764

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.93  E-value=1.5e-26  Score=154.79  Aligned_cols=161  Identities=16%  Similarity=0.141  Sum_probs=111.7

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCCcccc----------ccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhcc
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGEIVTT----------IPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQ   82 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~----------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   82 (180)
                      ..+.+||+++|+++||||||+|+|++......          ..+.......+...+..+.++|+||+..+.......+.
T Consensus         2 ~~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~   81 (179)
T d1wb1a4           2 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAAD   81 (179)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTT
T ss_pred             CCCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhh
Confidence            45788999999999999999999986441111          11223344455668889999999999988888888999


Q ss_pred             ccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHh---HHHhHhCCCccCCcceEEEEeec
Q 030289           83 NTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVS---EVTDKLGLHSLRQRRWYIQAACA  159 (180)
Q Consensus        83 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Sa  159 (180)
                      .+|++++++|+.+...-+. ...+. .+.   ..++|+++|+||+|+.+.....   +....+..........+++++||
T Consensus        82 ~~d~~ilv~d~~~g~~~~~-~~~~~-~~~---~~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA  156 (179)
T d1wb1a4          82 IIDLALIVVDAKEGPKTQT-GEHML-ILD---HFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISA  156 (179)
T ss_dssp             SCCEEEEEEETTTCSCHHH-HHHHH-HHH---HTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCT
T ss_pred             hccccccccccccccchhh-hhhhh-hhh---hcCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc
Confidence            9999999999986432222 22222 222   2478999999999998743221   11122111111223468999999


Q ss_pred             cCCCChHHHHHHHHHHhhh
Q 030289          160 TSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       160 ~~~~~i~~~~~~l~~~~~~  178 (180)
                      ++|+|++++++.|.+.+.+
T Consensus       157 ~~g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         157 KTGFGVDELKNLIITTLNN  175 (179)
T ss_dssp             TTCTTHHHHHHHHHHHHHH
T ss_pred             cCCcCHHHHHHHHHhcCCc
Confidence            9999999999999998875

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.93  E-value=2e-25  Score=146.68  Aligned_cols=146  Identities=24%  Similarity=0.330  Sum_probs=108.5

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCC--ccccc--cccceeEEEEEEcCeEEEEEEcCCCCC--------C-hhhHHhhccc
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGE--IVTTI--PTIGFNVETVEYKNVSFTVWDVGGQDK--------I-RPLWRHYFQN   83 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~--~~~~~--~t~~~~~~~~~~~~~~~~i~D~~G~~~--------~-~~~~~~~~~~   83 (180)
                      +||+++|.+|||||||+|+|++.+  .....  .|.......+...+..+.+|||||...        . .......+.+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   80 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEK   80 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHHh
Confidence            589999999999999999999766  22222  244455566777899999999999321        1 1223445678


Q ss_pred             cCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCC
Q 030289           84 THGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQ  163 (180)
Q Consensus        84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  163 (180)
                      +|++++|+|++++...+...-+ ...      ...++++++||.|+.+....+++...+...      .+++++||++|+
T Consensus        81 ad~ii~v~d~~~~~~~~~~~~~-~~~------~~~~~i~~~~k~d~~~~~~~~~~~~~~~~~------~~~~~vSA~~g~  147 (160)
T d1xzpa2          81 ADIVLFVLDASSPLDEEDRKIL-ERI------KNKRYLVVINKVDVVEKINEEEIKNKLGTD------RHMVKISALKGE  147 (160)
T ss_dssp             CSEEEEEEETTSCCCHHHHHHH-HHH------TTSSEEEEEEECSSCCCCCHHHHHHHHTCS------TTEEEEEGGGTC
T ss_pred             CCEEEEEEeCCCCcchhhhhhh-hhc------ccccceeeeeeccccchhhhHHHHHHhCCC------CcEEEEECCCCC
Confidence            9999999999987654433222 221      356799999999999888877777666532      358999999999


Q ss_pred             ChHHHHHHHHHH
Q 030289          164 GLYEGLDWLSSN  175 (180)
Q Consensus       164 ~i~~~~~~l~~~  175 (180)
                      ||++++++|.+.
T Consensus       148 gi~~L~~~I~ke  159 (160)
T d1xzpa2         148 GLEKLEESIYRE  159 (160)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhc
Confidence            999999998764

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.93  E-value=8.6e-26  Score=150.03  Aligned_cols=152  Identities=18%  Similarity=0.136  Sum_probs=101.5

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCCcc--c--cccccceeEEEEEEcCeEEEEEEcCCCCCC---------hhhHHhhcccc
Q 030289           18 RILMVGLDAAGKTTILYKLKLGEIV--T--TIPTIGFNVETVEYKNVSFTVWDVGGQDKI---------RPLWRHYFQNT   84 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~~~--~--~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~~~~   84 (180)
                      .|+++|++|||||||+|+|++....  .  ...|.......+......+.+||++|....         ......++..+
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~a   81 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREA   81 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccccccccccccceeeeeccccccccccccccccccC
Confidence            6899999999999999999976622  2  223555667778889999999999993221         22345556789


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCC
Q 030289           85 HGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQG  164 (180)
Q Consensus        85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  164 (180)
                      |+++++.+.++..... ...++. .+..   .++|+++|+||+|+.++...+...+...     .....++++||++|.|
T Consensus        82 d~i~~~~~~~~~~~~~-~~~~~~-~l~~---~~~pviiv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~i~iSAk~g~g  151 (171)
T d1mkya1          82 DLVLFVVDGKRGITKE-DESLAD-FLRK---STVDTILVANKAENLREFEREVKPELYS-----LGFGEPIPVSAEHNIN  151 (171)
T ss_dssp             SEEEEEEETTTCCCHH-HHHHHH-HHHH---HTCCEEEEEESCCSHHHHHHHTHHHHGG-----GSSCSCEECBTTTTBS
T ss_pred             cEEEEeeccccccccc-cccccc-cccc---ccccccccchhhhhhhhhhhHHHHHHHh-----cCCCCeEEEecCCCCC
Confidence            9999999987543322 122222 2222   3678999999999865322211111111     1122468899999999


Q ss_pred             hHHHHHHHHHHhhhc
Q 030289          165 LYEGLDWLSSNVSAK  179 (180)
Q Consensus       165 i~~~~~~l~~~~~~~  179 (180)
                      +++++++|.+.+.++
T Consensus       152 id~L~~~i~~~l~e~  166 (171)
T d1mkya1         152 LDTMLETIIKKLEEK  166 (171)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCCC
Confidence            999999999998876

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.93  E-value=3e-25  Score=149.24  Aligned_cols=160  Identities=17%  Similarity=0.131  Sum_probs=107.3

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCc--ccccc--ccceeEEEEEEcCeEEEEEEcCCCCC------------ChhhH
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNVSFTVWDVGGQDK------------IRPLW   77 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~------------~~~~~   77 (180)
                      .+.+||+|+|++|||||||+|+|++...  ....+  |.......+...+..+.++|+||...            .....
T Consensus         6 ~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1mkya2           6 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRV   85 (186)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCceeeeeccCCccccccccccccccchhHHH
Confidence            4579999999999999999999998762  22222  33444556777889999999999543            22345


Q ss_pred             HhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEE
Q 030289           78 RHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQ  155 (180)
Q Consensus        78 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~  155 (180)
                      ...++.+|++++|+|++.... .....+...+ .   ..+.|+++|+||+|+.....  .+++.+.+..........+++
T Consensus        86 ~~~~~~~dvii~v~d~~~~~~-~~~~~~~~~~-~---~~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  160 (186)
T d1mkya2          86 VDSIEKADVVVIVLDATQGIT-RQDQRMAGLM-E---RRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI  160 (186)
T ss_dssp             HHHHHHCSEEEEEEETTTCCC-HHHHHHHHHH-H---HTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHhcCCEEEEeecccccch-hhHHHHHHHH-H---HcCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeEE
Confidence            556678999999999975432 2222222222 2   24689999999999865332  333333322221222245799


Q ss_pred             EeeccCCCChHHHHHHHHHHhhh
Q 030289          156 AACATSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       156 ~~Sa~~~~~i~~~~~~l~~~~~~  178 (180)
                      ++||++|.|++++++.|.+.+..
T Consensus       161 ~vSa~~g~gv~~L~~~i~~~~~~  183 (186)
T d1mkya2         161 FTSADKGWNIDRMIDAMNLAYAS  183 (186)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999887654

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.92  E-value=2.1e-25  Score=149.65  Aligned_cols=154  Identities=18%  Similarity=0.222  Sum_probs=99.3

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCC-cccccc--ccceeEEEEEEcCeEEEEEEcCCCCCC---------------hhhHHh
Q 030289           18 RILMVGLDAAGKTTILYKLKLGE-IVTTIP--TIGFNVETVEYKNVSFTVWDVGGQDKI---------------RPLWRH   79 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~-~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~---------------~~~~~~   79 (180)
                      .|+++|++|||||||+|+|++.+ .....|  |..  ...+...  .+.+|||||....               ......
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~--~~~~~~~--~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~   77 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK--IIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIED   77 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS--CEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeec--ccccccc--cceecccCCceeccccccccccccchhhhhhhhh
Confidence            58999999999999999999876 222333  333  2333333  4678999994211               112344


Q ss_pred             hccccCEEEEEEECCChhhHHHHH---------HHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccC
Q 030289           80 YFQNTHGLIFVVDSNDRERIGEAK---------DELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLR  148 (180)
Q Consensus        80 ~~~~~~~~i~v~d~~~~~~~~~~~---------~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~  148 (180)
                      .++.+|++++|+|...........         ..+...+.   ..++|+++|+||+|+.+...  ...+...+.. ...
T Consensus        78 ~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~---~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~-~~~  153 (184)
T d2cxxa1          78 NAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLR---ELDIPTIVAVNKLDKIKNVQEVINFLAEKFEV-PLS  153 (184)
T ss_dssp             HGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHH---HTTCCEEEEEECGGGCSCHHHHHHHHHHHHTC-CGG
T ss_pred             cccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHH---HcCCCEEEEEeeeehhhhHHHHHHHHHHHhcc-ccc
Confidence            556799999999987542221111         11122222   24789999999999875322  1122223322 222


Q ss_pred             CcceEEEEeeccCCCChHHHHHHHHHHhhhc
Q 030289          149 QRRWYIQAACATSGQGLYEGLDWLSSNVSAK  179 (180)
Q Consensus       149 ~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  179 (180)
                      .....++++||++|.||+++++.+.+.+.+|
T Consensus       154 ~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e~  184 (184)
T d2cxxa1         154 EIDKVFIPISAKFGDNIERLKNRIFEVIRER  184 (184)
T ss_dssp             GHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHccCC
Confidence            3344688999999999999999999999875

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=2.2e-24  Score=147.37  Aligned_cols=157  Identities=25%  Similarity=0.374  Sum_probs=113.2

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEE---cCeEEEEEEcCCCCCCh-hhHHhhccccCEEEEEEEC
Q 030289           18 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY---KNVSFTVWDVGGQDKIR-PLWRHYFQNTHGLIFVVDS   93 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~---~~~~~~i~D~~G~~~~~-~~~~~~~~~~~~~i~v~d~   93 (180)
                      +|+|+|++|||||||+|+|.++++....+|.+.....+..   .+..+.+||++|++.++ ..+..++..++++++|+|+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D~   81 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDS   81 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEET
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcccCCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceEEEc
Confidence            7999999999999999999998877777888888777766   56789999999998875 4578888999999999999


Q ss_pred             CChhh-HHHHHHHHHHHhccc--ccCCCeEEEEEecCCCCCCCCHhHHHhHhC---------------------------
Q 030289           94 NDRER-IGEAKDELHRMLSED--ELREAVLLVFANKQDLPNAMSVSEVTDKLG---------------------------  143 (180)
Q Consensus        94 ~~~~~-~~~~~~~~~~~~~~~--~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~---------------------------  143 (180)
                      ++..+ +.....++..++...  ....+|+++++||+|+......+++.+.+.                           
T Consensus        82 ~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~~~~i~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~  161 (207)
T d2fh5b1          82 AAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQL  161 (207)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCS
T ss_pred             ccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCCHHHHHHHHHHHhhhhhhccccccceeehhhhhhhhh
Confidence            98654 345555555544321  235689999999999987665554332210                           


Q ss_pred             -C---Cc-c--CCcceEEEEeeccCCCC------hHHHHHHHHH
Q 030289          144 -L---HS-L--RQRRWYIQAACATSGQG------LYEGLDWLSS  174 (180)
Q Consensus       144 -~---~~-~--~~~~~~~~~~Sa~~~~~------i~~~~~~l~~  174 (180)
                       .   .+ +  ...++.++++|++++.+      ++.+-+|+.+
T Consensus       162 ~~~~~~~~~~~~~~~v~~~~~S~~~~~~~~~~~~i~~~~~wl~~  205 (207)
T d2fh5b1         162 GKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAK  205 (207)
T ss_dssp             SCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHH
T ss_pred             cccchhhhHHhccCCcEEEEeeecCCCcccccccHHHHHHHHHH
Confidence             0   00 0  11346799999999886      7777777654

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.91  E-value=1.6e-24  Score=146.69  Aligned_cols=163  Identities=11%  Similarity=0.049  Sum_probs=98.6

Q ss_pred             hhhcccCcc-EEEEEcCCCCChHHHHHHhhcCCc-cc--cccccceeEEEEEEcCeEEEEEEcCCCCCC-----------
Q 030289            9 KMLFARKEM-RILMVGLDAAGKTTILYKLKLGEI-VT--TIPTIGFNVETVEYKNVSFTVWDVGGQDKI-----------   73 (180)
Q Consensus         9 ~~~~~~~~~-~i~i~G~~~~GKStli~~l~~~~~-~~--~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~-----------   73 (180)
                      ...+|+..+ +|+|+|++|||||||+|+|++.+. ..  ..++......... ....+.+.|++|....           
T Consensus        15 ~~~~p~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~   93 (195)
T d1svia_          15 PEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI-INDELHFVDVPGYGFAKVSKSEREAWG   93 (195)
T ss_dssp             GGGSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE-ETTTEEEEECCCBCCCSSCHHHHHHHH
T ss_pred             hhHCCCCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeeccccc-ccccceEEEEEeeccccccccccchhh
Confidence            344555555 999999999999999999997652 11  1222222222222 2345566777763221           


Q ss_pred             --hhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcc
Q 030289           74 --RPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRR  151 (180)
Q Consensus        74 --~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  151 (180)
                        ..........++++++++|++++.. ....+++..+ ..   .++|+++|+||+|+.++...++..+...........
T Consensus        94 ~~~~~~~~~~~~~~~vi~viD~~~~~~-~~~~~~~~~l-~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~  168 (195)
T d1svia_          94 RMIETYITTREELKAVVQIVDLRHAPS-NDDVQMYEFL-KY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPE  168 (195)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHH-HH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTT
T ss_pred             hHHhhhhccccchhhhhhhhhcccccc-cccccccccc-cc---ccCcceechhhccccCHHHHHHHHHHHHHHhcccCC
Confidence              1112233446799999999975432 1222233222 22   468999999999987655544433332222222345


Q ss_pred             eEEEEeeccCCCChHHHHHHHHHHhh
Q 030289          152 WYIQAACATSGQGLYEGLDWLSSNVS  177 (180)
Q Consensus       152 ~~~~~~Sa~~~~~i~~~~~~l~~~~~  177 (180)
                      .+++++||++|.|+++++++|.+.+.
T Consensus       169 ~~~~~~SA~~~~gi~el~~~i~~~l~  194 (195)
T d1svia_         169 DELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             SEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCCCCHHHHHHHHHHHhC
Confidence            68999999999999999999998874

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.91  E-value=6e-24  Score=142.73  Aligned_cols=155  Identities=22%  Similarity=0.249  Sum_probs=101.9

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCC--cccc-ccccceeEEEEEE-cCeEEEEEEcCCC----CCChh---hHHhhccccCE
Q 030289           18 RILMVGLDAAGKTTILYKLKLGE--IVTT-IPTIGFNVETVEY-KNVSFTVWDVGGQ----DKIRP---LWRHYFQNTHG   86 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~--~~~~-~~t~~~~~~~~~~-~~~~~~i~D~~G~----~~~~~---~~~~~~~~~~~   86 (180)
                      +|+|+|++|||||||+|+|++..  ...+ ..|.......... ++..+.+|||||.    .....   .....+..++.
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~   82 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRV   82 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCE
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHHHhhh
Confidence            69999999999999999998766  2222 2355555555555 4568999999993    22222   22234467888


Q ss_pred             EEEEEECCChhh---HHHHHHH-HHHHhcccccCCCeEEEEEecCCCCCCCC-HhHHHhHhCCCccCCcceEEEEeeccC
Q 030289           87 LIFVVDSNDRER---IGEAKDE-LHRMLSEDELREAVLLVFANKQDLPNAMS-VSEVTDKLGLHSLRQRRWYIQAACATS  161 (180)
Q Consensus        87 ~i~v~d~~~~~~---~~~~~~~-~~~~~~~~~~~~~~iiiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~  161 (180)
                      ++++++....+.   .+....+ ...........++|+++|+||+|+.+... .+.+...+.      .+.+++.+||++
T Consensus        83 i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~~~~~~~~~~~------~~~~v~~iSA~~  156 (185)
T d1lnza2          83 IVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLT------DDYPVFPISAVT  156 (185)
T ss_dssp             EEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCC------SCCCBCCCSSCC
T ss_pred             hhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHHHHHHHHHHhc------cCCcEEEEECCC
Confidence            888887654321   1111111 11122223345789999999999986432 223333322      245789999999


Q ss_pred             CCChHHHHHHHHHHhhh
Q 030289          162 GQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       162 ~~~i~~~~~~l~~~~~~  178 (180)
                      |.|++++++.+.+.+.+
T Consensus       157 g~Gi~~L~~~i~~~L~~  173 (185)
T d1lnza2         157 REGLRELLFEVANQLEN  173 (185)
T ss_dssp             SSTTHHHHHHHHHHHTS
T ss_pred             CCCHHHHHHHHHHhhhh
Confidence            99999999999998865

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.90  E-value=2.1e-23  Score=144.23  Aligned_cols=156  Identities=21%  Similarity=0.192  Sum_probs=100.9

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCCcc--cc-ccccceeEE------------------EEEEcCeEEEEEEcCCCCCChh
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGEIV--TT-IPTIGFNVE------------------TVEYKNVSFTVWDVGGQDKIRP   75 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~~~--~~-~~t~~~~~~------------------~~~~~~~~~~i~D~~G~~~~~~   75 (180)
                      ..|+|+|++++|||||+|+|++....  +. ..+......                  .+...+..+.++||||+..|..
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~   85 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTT   85 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTT
T ss_pred             CEEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccc
Confidence            34999999999999999999864311  00 011111111                  1223456899999999999988


Q ss_pred             hHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCH---hHHHh------------
Q 030289           76 LWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSV---SEVTD------------  140 (180)
Q Consensus        76 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~---~~~~~------------  140 (180)
                      .....+..+|++++|+|+.+.-.  .....+...+.   ..++|+++|+||+|+......   ..+..            
T Consensus        86 ~~~~~~~~~D~~ilVvda~~g~~--~~~~~~~~~~~---~~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~  160 (227)
T d1g7sa4          86 LRKRGGALADLAILIVDINEGFK--PQTQEALNILR---MYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQK  160 (227)
T ss_dssp             SBCSSSBSCSEEEEEEETTTCCC--HHHHHHHHHHH---HTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHH
T ss_pred             cchhcccccceEEEEEecccCcc--cchhHHHHHhh---cCCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHH
Confidence            87788899999999999975422  22222222222   247899999999998653210   00000            


Q ss_pred             ----------Hh---CC-------CccCCcceEEEEeeccCCCChHHHHHHHHHHhh
Q 030289          141 ----------KL---GL-------HSLRQRRWYIQAACATSGQGLYEGLDWLSSNVS  177 (180)
Q Consensus       141 ----------~~---~~-------~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  177 (180)
                                .+   ..       ........+++++||++|.|++++++.+.....
T Consensus       161 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~  217 (227)
T d1g7sa4         161 LDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (227)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence                      00   00       000122468999999999999999999887654

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.89  E-value=4.9e-23  Score=139.31  Aligned_cols=160  Identities=16%  Similarity=0.097  Sum_probs=105.9

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCC--cc--c--cccccceeEEEEEE-----------------------cCeEEE
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGE--IV--T--TIPTIGFNVETVEY-----------------------KNVSFT   63 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~--~~--~--~~~t~~~~~~~~~~-----------------------~~~~~~   63 (180)
                      ++..+||+++|+.++|||||+++|++..  ..  .  ...|....+.....                       ....+.
T Consensus         2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (195)
T d1kk1a3           2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   81 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEe
Confidence            3567899999999999999999998643  11  1  11122222111111                       234689


Q ss_pred             EEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHh----HHH
Q 030289           64 VWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVS----EVT  139 (180)
Q Consensus        64 i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~----~~~  139 (180)
                      ++|+||+..|.......+..+|++++++|+.+....+...+.+......   ...+++++.||+|+.+.....    ++.
T Consensus        82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~---~~~~iiv~inK~D~~d~~~~~~~~~~~~  158 (195)
T d1kk1a3          82 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENYRQIK  158 (195)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred             eeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh---cCccceeeeecccchhhHHHHHHHHHHH
Confidence            9999999999888888899999999999998653223333333222111   234588899999988743221    222


Q ss_pred             hHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHHhh
Q 030289          140 DKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVS  177 (180)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  177 (180)
                      +.+..  .....++++++||++|+|++++++.+.+.+.
T Consensus       159 ~~~~~--~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~iP  194 (195)
T d1kk1a3         159 EFIEG--TVAENAPIIPISALHGANIDVLVKAIEDFIP  194 (195)
T ss_dssp             HHHTT--STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHhcc--ccCCCCeEEEEECCCCCCHHHHHHHHHHHCc
Confidence            22221  1223568999999999999999999987653

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.88  E-value=4.8e-23  Score=140.36  Aligned_cols=160  Identities=14%  Similarity=0.081  Sum_probs=103.9

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCCcc------ccccccceeE--EEEEE--------------------------cC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGEIV------TTIPTIGFNV--ETVEY--------------------------KN   59 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~------~~~~t~~~~~--~~~~~--------------------------~~   59 (180)
                      ++++||+++|+.++|||||+++|++....      ....+.....  ..+..                          ..
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL   85 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence            45689999999999999999999863210      0000111111  11100                          12


Q ss_pred             eEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhH--
Q 030289           60 VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSE--  137 (180)
Q Consensus        60 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~--  137 (180)
                      ..+.++|+||+..|.......+..+|++++|+|+.+.-.-......+... ..  ....|++++.||+|+.+......  
T Consensus        86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~-~~--~~i~~iIV~vNK~Dl~~~~~~~~~~  162 (205)
T d2qn6a3          86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVAL-GI--IGVKNLIIVQNKVDVVSKEEALSQY  162 (205)
T ss_dssp             EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHH-HH--TTCCCEEEEEECGGGSCHHHHHHHH
T ss_pred             EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHH-HH--cCCceeeeccccCCCccchHHHHHH
Confidence            46899999999999888888899999999999997642112222222222 22  12357899999999986432222  


Q ss_pred             --HHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHHhhh
Q 030289          138 --VTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSA  178 (180)
Q Consensus       138 --~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  178 (180)
                        +...+..  .....++++++||++|.||+++++.+...+..
T Consensus       163 ~~~~~~l~~--~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip~  203 (205)
T d2qn6a3         163 RQIKQFTKG--TWAENVPIIPVSALHKINIDSLIEGIEEYIKT  203 (205)
T ss_dssp             HHHHHHHTT--STTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             HHHHHHhcc--ccCCCCeEEEEeCCCCCChHHHHHHHHhhCCC
Confidence              2222221  22345789999999999999999999887653

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.87  E-value=8.6e-23  Score=137.63  Aligned_cols=159  Identities=17%  Similarity=0.097  Sum_probs=110.0

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcC-----------------C--ccccccccceeEEEEEEcCeEEEEEEcCCCCCChh
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLG-----------------E--IVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRP   75 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~-----------------~--~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~   75 (180)
                      +++||+++|+.++|||||+++|+..                 .  ..+...|+......+...+..+.++||||+..|..
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~   81 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHH
Confidence            5789999999999999999999741                 0  11112255555566777889999999999999988


Q ss_pred             hHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC-HhHH----HhHhCCCccCCc
Q 030289           76 LWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS-VSEV----TDKLGLHSLRQR  150 (180)
Q Consensus        76 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~-~~~~----~~~~~~~~~~~~  150 (180)
                      .....+..+|++++|+|+.+.-. .+..+.+......   ...|+|++.||+|+.++.. .+.+    ...+........
T Consensus        82 ~~~~~~~~aD~allVVda~~G~~-~QT~~~~~~a~~~---~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~  157 (196)
T d1d2ea3          82 NMITGTAPLDGCILVVAANDGPM-PQTREHLLLARQI---GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE  157 (196)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSC-HHHHHHHHHHHHT---TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHHhhcCeEEEEEEcCCCCc-hhHHHHHHHHHHh---cCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCcc
Confidence            88888999999999999985432 2223333332221   3457999999999875322 2222    222221222334


Q ss_pred             ceEEEEeeccCC----------CChHHHHHHHHHHhh
Q 030289          151 RWYIQAACATSG----------QGLYEGLDWLSSNVS  177 (180)
Q Consensus       151 ~~~~~~~Sa~~~----------~~i~~~~~~l~~~~~  177 (180)
                      .++++++|+++|          .+++++++.+.+.+.
T Consensus       158 ~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP  194 (196)
T d1d2ea3         158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (196)
T ss_dssp             TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             cCEEEEEEccccccccCcccccCCHHHHHHHHHhhCC
Confidence            578999999988          488888888876553

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.85  E-value=1.6e-21  Score=132.39  Aligned_cols=142  Identities=18%  Similarity=0.110  Sum_probs=98.4

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCC-------------cc-------ccccccceeEEEEEEcCeEEEEEEcCCCCCCh
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGE-------------IV-------TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIR   74 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~-------------~~-------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~   74 (180)
                      +++||+++|+.++|||||+++|+...             ..       +..-|++.....+...+.++.++||||+..|-
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~   81 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI   81 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhH
Confidence            57899999999999999999996320             00       11336777778888899999999999999999


Q ss_pred             hhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCe-EEEEEecCCCCCCCC-HhH----HHhHhCCCccC
Q 030289           75 PLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV-LLVFANKQDLPNAMS-VSE----VTDKLGLHSLR  148 (180)
Q Consensus        75 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iiiv~nK~D~~~~~~-~~~----~~~~~~~~~~~  148 (180)
                      ......+..+|++++|+|+.+.-..+... .+... ..   .++| +++++||+|+.+... .++    +...+....+.
T Consensus        82 ~~~~~~~~~aD~avlVvda~~Gv~~qt~~-~~~~~-~~---~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~~  156 (204)
T d2c78a3          82 KNMITGAAQMDGAILVVSAADGPMPQTRE-HILLA-RQ---VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFP  156 (204)
T ss_dssp             HHHHHHHTTCSSEEEEEETTTCCCHHHHH-HHHHH-HH---TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHCCEEEEEEECCCCCcHHHHH-HHHHH-HH---cCCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCCC
Confidence            88889999999999999997654333222 22222 22   3554 788899999865321 222    22222222233


Q ss_pred             CcceEEEEeeccC
Q 030289          149 QRRWYIQAACATS  161 (180)
Q Consensus       149 ~~~~~~~~~Sa~~  161 (180)
                      ...+++++.|+..
T Consensus       157 ~~~i~~i~~sa~~  169 (204)
T d2c78a3         157 GDEVPVIRGSALL  169 (204)
T ss_dssp             TTTSCEEECCHHH
T ss_pred             cccceeeeeechh
Confidence            4456788888763

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.85  E-value=1.4e-20  Score=129.06  Aligned_cols=150  Identities=16%  Similarity=0.107  Sum_probs=101.0

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCC--cc----------------------------------ccccccceeEEEEE
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGE--IV----------------------------------TTIPTIGFNVETVE   56 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~--~~----------------------------------~~~~t~~~~~~~~~   56 (180)
                      ++..+||+++|+.++|||||+++|+...  ..                                  ....|+......+.
T Consensus         6 ~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~   85 (222)
T d1zunb3           6 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS   85 (222)
T ss_dssp             SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred             cCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEe
Confidence            4567899999999999999999996311  00                                  00113333444555


Q ss_pred             EcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCC-CeEEEEEecCCCCCCCC-
Q 030289           57 YKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELRE-AVLLVFANKQDLPNAMS-  134 (180)
Q Consensus        57 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~iiiv~nK~D~~~~~~-  134 (180)
                      ..+..+.++|+||+..|-.........+|++++|+|+...-.  ........++..   .+ ..++++.||+|+.+... 
T Consensus        86 ~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~--~Qt~e~~~~~~~---~gv~~iiv~vNK~D~~~~~~~  160 (222)
T d1zunb3          86 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ--TQTRRHSYIASL---LGIKHIVVAINKMDLNGFDER  160 (222)
T ss_dssp             CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC--HHHHHHHHHHHH---TTCCEEEEEEECTTTTTSCHH
T ss_pred             ccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcc--cchHHHHHHHHH---cCCCEEEEEEEccccccccce
Confidence            578899999999999999888888999999999999975432  222222223222   34 34889999999976332 


Q ss_pred             -HhH----HHhHhCCCccCCcceEEEEeeccCCCChHH
Q 030289          135 -VSE----VTDKLGLHSLRQRRWYIQAACATSGQGLYE  167 (180)
Q Consensus       135 -~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  167 (180)
                       .++    +...+....+....++|+++||.+|+||.+
T Consensus       161 ~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~  198 (222)
T d1zunb3         161 VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN  198 (222)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             ehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCCc
Confidence             122    222222223334567899999999999843

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.83  E-value=2.2e-19  Score=126.09  Aligned_cols=110  Identities=21%  Similarity=0.101  Sum_probs=85.6

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCC---------------------ccccccccceeEEEEEEcCeEEEEEEcCCCCCChh
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGE---------------------IVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRP   75 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~---------------------~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~   75 (180)
                      -||+++|+.|+|||||+.+++...                     -.+...|+......+..++.++.++||||+..|..
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~~   86 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTI   86 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCST
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhhHH
Confidence            379999999999999999996311                     00112366677788888999999999999999999


Q ss_pred             hHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289           76 LWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN  131 (180)
Q Consensus        76 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~  131 (180)
                      .....++-+|++|+|+|+.+.-..+...-| ....    ..++|.++++||.|...
T Consensus        87 e~~~~l~~~D~avlVvda~~Gv~~~T~~~w-~~a~----~~~lP~i~fINKmDr~~  137 (276)
T d2bv3a2          87 EVERSMRVLDGAIVVFDSSQGVEPQSETVW-RQAE----KYKVPRIAFANKMDKTG  137 (276)
T ss_dssp             THHHHHHHCCEEEEEEETTTSSCHHHHHHH-HHHH----TTTCCEEEEEECTTSTT
T ss_pred             HHHHHHHhhhheEEeccccCCcchhHHHHH-HHHH----HcCCCEEEEEecccccc
Confidence            999999999999999999865443333333 3332    24899999999999765

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=2e-20  Score=127.43  Aligned_cols=119  Identities=24%  Similarity=0.330  Sum_probs=86.3

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhc----cccCEEEEE
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYF----QNTHGLIFV   90 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~----~~~~~~i~v   90 (180)
                      .+.+|+++|++|||||||+|+|++++.... .|.......+...+..+.+||+||+..+...+..++    ..++.++++
T Consensus         2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~~-tt~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~~   80 (209)
T d1nrjb_           2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFM   80 (209)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCCCB-CCCSSCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCe-EEecceEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhccccceE
Confidence            357899999999999999999998774422 233444555666788899999999988766655544    456888999


Q ss_pred             EECCC-hhhHHHHHHHHHHHh---cccccCCCeEEEEEecCCCCCCCC
Q 030289           91 VDSND-RERIGEAKDELHRML---SEDELREAVLLVFANKQDLPNAMS  134 (180)
Q Consensus        91 ~d~~~-~~~~~~~~~~~~~~~---~~~~~~~~~iiiv~nK~D~~~~~~  134 (180)
                      +|+.+ ..+++....|+....   ......++|+++|+||+|+.+...
T Consensus        81 vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~  128 (209)
T d1nrjb_          81 VDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP  128 (209)
T ss_dssp             EETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred             EEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccCc
Confidence            98764 555666666654433   222346899999999999977543

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=1.1e-19  Score=120.86  Aligned_cols=152  Identities=18%  Similarity=0.109  Sum_probs=95.9

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCCc--cccc-cccce-eEEEEEEcCeEEEEEEcCCCCCChhh---------HHhhcccc
Q 030289           18 RILMVGLDAAGKTTILYKLKLGEI--VTTI-PTIGF-NVETVEYKNVSFTVWDVGGQDKIRPL---------WRHYFQNT   84 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~~--~~~~-~t~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~---------~~~~~~~~   84 (180)
                      .|+|+|.+|||||||+|+|++...  .... .|... ...........+..+|++|.......         .......+
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDV   86 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCceeEeecCCCceecchhhhhhhhhhccccchhhc
Confidence            488999999999999999998762  2222 23333 33444447778888999985432111         11122356


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC-HhHHHhHhCCCccCCcceEEEEeeccCCC
Q 030289           85 HGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS-VSEVTDKLGLHSLRQRRWYIQAACATSGQ  163 (180)
Q Consensus        85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  163 (180)
                      ++++++.|..+...  ....+...+..    ...|.++|+||.|+..... .......+..   .....+++++||++|.
T Consensus        87 ~~~l~~~d~~~~~~--~~~~~~~~l~~----~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~---~~~~~~~~~vSA~~g~  157 (179)
T d1egaa1          87 ELVIFVVEGTRWTP--DDEMVLNKLRE----GKAPVILAVNKVDNVQEKADLLPHLQFLAS---QMNFLDIVPISAETGL  157 (179)
T ss_dssp             EEEEEEEETTCCCH--HHHHHHHHHHS----SSSCEEEEEESTTTCCCHHHHHHHHHHHHT---TSCCSEEEECCTTTTT
T ss_pred             ceeEEEEecCccch--hHHHHHHHhhh----ccCceeeeeeeeeccchhhhhhhHhhhhhh---hcCCCCEEEEeCcCCC
Confidence            77888888765332  22333333322    3567899999999876421 1111111111   1123479999999999


Q ss_pred             ChHHHHHHHHHHhhh
Q 030289          164 GLYEGLDWLSSNVSA  178 (180)
Q Consensus       164 ~i~~~~~~l~~~~~~  178 (180)
                      |++++++.+.+.+.+
T Consensus       158 gi~~L~~~i~~~lpe  172 (179)
T d1egaa1         158 NVDTIAAIVRKHLPE  172 (179)
T ss_dssp             THHHHHHHHHTTCCB
T ss_pred             CHHHHHHHHHHhCCC
Confidence            999999999988865

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.80  E-value=1.2e-18  Score=121.91  Aligned_cols=108  Identities=16%  Similarity=0.141  Sum_probs=83.8

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCC--c-------------------cccccccceeEEEEEEcCeEEEEEEcCCCCCChhh
Q 030289           18 RILMVGLDAAGKTTILYKLKLGE--I-------------------VTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPL   76 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~--~-------------------~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   76 (180)
                      ||+++|+.++|||||+.+|+...  .                   .....|+......+..++.++.++||||+..|...
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~e   83 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGE   83 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhhh
Confidence            79999999999999999996321  0                   01123666777888889999999999999999999


Q ss_pred             HHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCC
Q 030289           77 WRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP  130 (180)
Q Consensus        77 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~  130 (180)
                      ....++-+|++++|+|+.+.-..+....| ....    ..++|.++++||+|..
T Consensus        84 ~~~al~~~D~avlvvda~~Gv~~~t~~~~-~~~~----~~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          84 IRGALEAADAALVAVSAEAGVQVGTERAW-TVAE----RLGLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHH----HTTCCEEEEEECGGGC
T ss_pred             hhhhhcccCceEEEeeccCCccchhHHHH-Hhhh----hccccccccccccccc
Confidence            99999999999999999865433333333 2222    2478999999999964

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=1.7e-19  Score=124.87  Aligned_cols=150  Identities=15%  Similarity=0.080  Sum_probs=102.4

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC----------------------------------ccccccccceeEEEEEEcC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE----------------------------------IVTTIPTIGFNVETVEYKN   59 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~----------------------------------~~~~~~t~~~~~~~~~~~~   59 (180)
                      +.++||+++|+.++|||||+.+|+...                                  ..+...|+......+...+
T Consensus         4 k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~   83 (239)
T d1f60a3           4 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   83 (239)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred             CCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC
Confidence            446899999999999999999996310                                  0112347777788888899


Q ss_pred             eEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhh-----HHHHHHHHHHHhcccccCCC-eEEEEEecCCCCCCC
Q 030289           60 VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRER-----IGEAKDELHRMLSEDELREA-VLLVFANKQDLPNAM  133 (180)
Q Consensus        60 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~iiiv~nK~D~~~~~  133 (180)
                      .++.++|+|||..|-.........+|++++|+|+....-     .+.....+..+...   -++ ++++++||+|+.+..
T Consensus        84 ~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~---~gv~~iiv~iNKmD~~~~d  160 (239)
T d1f60a3          84 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSVKWD  160 (239)
T ss_dssp             EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGGTTC
T ss_pred             EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHH---cCCCeEEEEEECCCCCCCC
Confidence            999999999999999999999999999999999974311     01112222222221   244 588999999987632


Q ss_pred             C--HhHH----HhHhCCCccCCcceEEEEeeccCCCChH
Q 030289          134 S--VSEV----TDKLGLHSLRQRRWYIQAACATSGQGLY  166 (180)
Q Consensus       134 ~--~~~~----~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  166 (180)
                      .  .+++    ...+.........++++++|+.+|.|+-
T Consensus       161 ~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~  199 (239)
T d1f60a3         161 ESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMI  199 (239)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTT
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCcce
Confidence            2  1222    2221111222335688999999998863

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=8.2e-19  Score=117.19  Aligned_cols=165  Identities=13%  Similarity=0.096  Sum_probs=88.5

Q ss_pred             HHhhhcccCccEEEEEcCCCCChHHHHHHhhcCCccccc---cccceeE-EEEEEcCeEEEEEEcCCCCC-C-------h
Q 030289            7 RLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTI---PTIGFNV-ETVEYKNVSFTVWDVGGQDK-I-------R   74 (180)
Q Consensus         7 ~~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~---~t~~~~~-~~~~~~~~~~~i~D~~G~~~-~-------~   74 (180)
                      .+++.+..+.++|+++|.+|||||||+|+|++.+.....   ++..... ......+......+.++... .       .
T Consensus         7 ~~~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (188)
T d1puia_           7 DIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQ   86 (188)
T ss_dssp             SGGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHH
T ss_pred             ChhHCCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhh
Confidence            346677788999999999999999999999987632221   2222222 22222333333333333111 1       1


Q ss_pred             hhHHhhc---cccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCC-ccCCc
Q 030289           75 PLWRHYF---QNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLH-SLRQR  150 (180)
Q Consensus        75 ~~~~~~~---~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~-~~~~~  150 (180)
                      .......   ...+.++.+.+...... .....++.....    ...++++++||+|+.+........+.+... .....
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~  161 (188)
T d1puia_          87 RALGEYLEKRQSLQGLVVLMDIRHPLK-DLDQQMIEWAVD----SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNG  161 (188)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHHH----TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCS
T ss_pred             hhhhhhhhhhhheeEEEEeecccccch-hHHHHHHHHhhh----ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCC
Confidence            1111111   22344555555543322 222333333322    356799999999987743322222111110 01123


Q ss_pred             ceEEEEeeccCCCChHHHHHHHHHHh
Q 030289          151 RWYIQAACATSGQGLYEGLDWLSSNV  176 (180)
Q Consensus       151 ~~~~~~~Sa~~~~~i~~~~~~l~~~~  176 (180)
                      ..+++++||++|.||+++++.|.+.+
T Consensus       162 ~~~~i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         162 DVQVETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             CEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CCcEEEEeCCCCCCHHHHHHHHHHHh
Confidence            46899999999999999999987654

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.78  E-value=2.7e-19  Score=123.12  Aligned_cols=150  Identities=19%  Similarity=0.250  Sum_probs=96.1

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCC----------------------------------ccccccccceeEEEEEEcCe
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGE----------------------------------IVTTIPTIGFNVETVEYKNV   60 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~----------------------------------~~~~~~t~~~~~~~~~~~~~   60 (180)
                      +++||+++|+.++|||||+.+|+...                                  ......|+......+...+.
T Consensus         2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~   81 (224)
T d1jnya3           2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY   81 (224)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred             CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCc
Confidence            47899999999999999999985310                                  00111244455566677889


Q ss_pred             EEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhH------HHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC-
Q 030289           61 SFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERI------GEAKDELHRMLSEDELREAVLLVFANKQDLPNAM-  133 (180)
Q Consensus        61 ~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~-  133 (180)
                      .+.++||||+..|.......+.-+|++++|+|+.+...-      ....+.+... ..  ....+++++.||+|+.... 
T Consensus        82 ~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~-~~--~~~~~iIv~iNK~D~~~~~~  158 (224)
T d1jnya3          82 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILA-KT--MGLDQLIVAVNKMDLTEPPY  158 (224)
T ss_dssp             EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHH-HH--TTCTTCEEEEECGGGSSSTT
T ss_pred             eeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHH-HH--hCCCceEEEEEcccCCCccc
Confidence            999999999999999999999999999999999864211      1111211111 11  1234688999999987532 


Q ss_pred             C---HhHHHhHh----CCCccCCcceEEEEeeccCCCChHH
Q 030289          134 S---VSEVTDKL----GLHSLRQRRWYIQAACATSGQGLYE  167 (180)
Q Consensus       134 ~---~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~i~~  167 (180)
                      .   .+++....    .........++++++||.+|.|+.+
T Consensus       159 ~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         159 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             cHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            2   11111111    1111233467899999999999854

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.77  E-value=8.7e-19  Score=121.78  Aligned_cols=158  Identities=18%  Similarity=0.211  Sum_probs=89.8

Q ss_pred             hhhcccCccEEEEEcCCCCChHHHHHHhhcCC--c--------------------------------cccccccceeEEE
Q 030289            9 KMLFARKEMRILMVGLDAAGKTTILYKLKLGE--I--------------------------------VTTIPTIGFNVET   54 (180)
Q Consensus         9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~--~--------------------------------~~~~~t~~~~~~~   54 (180)
                      +....++++||+++|+.++|||||+.+|+...  .                                .....++......
T Consensus        17 ~~~~~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~   96 (245)
T d1r5ba3          17 KDMYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAY   96 (245)
T ss_dssp             HHHSCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCE
T ss_pred             HHhcCCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccc
Confidence            44555678899999999999999999995311  0                                0011233333445


Q ss_pred             EEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhh---H--H-HHHHHHHHHhcccccCCCeEEEEEecCC
Q 030289           55 VEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRER---I--G-EAKDELHRMLSEDELREAVLLVFANKQD  128 (180)
Q Consensus        55 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~--~-~~~~~~~~~~~~~~~~~~~iiiv~nK~D  128 (180)
                      +...+..+.++|+||+..|..........+|++++|+|+.+..-   +  . .....+ .++...  .-.++++++||+|
T Consensus        97 ~~~~~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l-~l~~~~--~i~~iiv~iNKmD  173 (245)
T d1r5ba3          97 FETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHA-VLARTQ--GINHLVVVINKMD  173 (245)
T ss_dssp             EECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHH-HHHHHT--TCSSEEEEEECTT
T ss_pred             cccccceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHH-HHHHHc--CCCeEEEEEEcCC
Confidence            55577899999999999999888888899999999999975311   0  0 122222 222221  1234889999999


Q ss_pred             CCCCCC----HhHHHhHhCCC------ccCCcceEEEEeeccCCCChHHHH
Q 030289          129 LPNAMS----VSEVTDKLGLH------SLRQRRWYIQAACATSGQGLYEGL  169 (180)
Q Consensus       129 ~~~~~~----~~~~~~~~~~~------~~~~~~~~~~~~Sa~~~~~i~~~~  169 (180)
                      +.....    .+++.+.+...      .-....++|+++||++|+||.+++
T Consensus       174 ~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~  224 (245)
T d1r5ba3         174 EPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  224 (245)
T ss_dssp             STTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             CCccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccch
Confidence            875322    22222222110      001235789999999999998754

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=9e-17  Score=118.97  Aligned_cols=159  Identities=13%  Similarity=0.092  Sum_probs=90.5

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccce-----eEEEEEE-cCeEEEEEEcCCCCCCh-----hhHHhh
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGF-----NVETVEY-KNVSFTVWDVGGQDKIR-----PLWRHY   80 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~-----~~~~~~~-~~~~~~i~D~~G~~~~~-----~~~~~~   80 (180)
                      ....++|+|+|.+|||||||+|+|.+... .......++     ....+.. ....+.+|||||-....     ......
T Consensus        53 ~~~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~~~~~~l~DtPG~~~~~~~~~~~~~~~~  132 (400)
T d1tq4a_          53 DSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMK  132 (400)
T ss_dssp             HHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTT
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccCCCeEEEEeCCCcccccccHHHHHHHhh
Confidence            34679999999999999999999997541 111111111     1112222 34468899999944322     123334


Q ss_pred             ccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC---------CCCHhHHHhHhC------CC
Q 030289           81 FQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN---------AMSVSEVTDKLG------LH  145 (180)
Q Consensus        81 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~---------~~~~~~~~~~~~------~~  145 (180)
                      +..+|.++++.|..-.+.   -.+.+..+ ..   .++|+++|.||+|...         ....+...+.+.      +.
T Consensus       133 ~~~~d~~l~~~~~~~~~~---d~~l~~~l-~~---~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~  205 (400)
T d1tq4a_         133 FYEYDFFIIISATRFKKN---DIDIAKAI-SM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFR  205 (400)
T ss_dssp             GGGCSEEEEEESSCCCHH---HHHHHHHH-HH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             hhcceEEEEecCCCCCHH---HHHHHHHH-HH---cCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHH
Confidence            567888888876532221   12222222 21   4789999999999521         111111111110      00


Q ss_pred             ccCCcceEEEEeeccCC--CChHHHHHHHHHHhhh
Q 030289          146 SLRQRRWYIQAACATSG--QGLYEGLDWLSSNVSA  178 (180)
Q Consensus       146 ~~~~~~~~~~~~Sa~~~--~~i~~~~~~l~~~~~~  178 (180)
                      ...-...++|.+|..+.  .++.++.+.+.+.+.+
T Consensus       206 ~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~  240 (400)
T d1tq4a_         206 ENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI  240 (400)
T ss_dssp             HTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred             HcCCCCCCEEEecCCcccccCHHHHHHHHHHHhHH
Confidence            00111236888887653  4899999998887754

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.60  E-value=6.5e-15  Score=102.90  Aligned_cols=117  Identities=9%  Similarity=0.083  Sum_probs=77.6

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCC-c-ccc--ccccceeEEEEEEcCeEEEEEEcCCCCCC----h---hhHHhh-
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGE-I-VTT--IPTIGFNVETVEYKNVSFTVWDVGGQDKI----R---PLWRHY-   80 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~-~-~~~--~~t~~~~~~~~~~~~~~~~i~D~~G~~~~----~---~~~~~~-   80 (180)
                      ....++|+++|.+|||||||+|++++.. . ...  ..|...........+..+.++||||-...    .   .....+ 
T Consensus        29 ~~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~  108 (257)
T d1h65a_          29 DVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL  108 (257)
T ss_dssp             TCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchHHHHHHHHHHHH
Confidence            3678999999999999999999999877 2 121  22555666777778999999999994321    1   111112 


Q ss_pred             -ccccCEEEEEEECCCh---hhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289           81 -FQNTHGLIFVVDSNDR---ERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN  131 (180)
Q Consensus        81 -~~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~  131 (180)
                       ....|++++|++++..   ..-.....++...+...  .-.++++|+||+|...
T Consensus       109 ~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~--~~~~~ivv~t~~D~~~  161 (257)
T d1h65a_         109 LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKG--IWNKAIVALTHAQFSP  161 (257)
T ss_dssp             TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGG--GGGGEEEEEECCSCCC
T ss_pred             hcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchh--hhhCEEEEEECcccCC
Confidence             2356889999987643   12223334444443321  1246899999999875

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.59  E-value=7.7e-15  Score=105.74  Aligned_cols=110  Identities=17%  Similarity=0.097  Sum_probs=77.5

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC--cc-----------------ccccccceeEEEEEE----------------cCe
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE--IV-----------------TTIPTIGFNVETVEY----------------KNV   60 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~--~~-----------------~~~~t~~~~~~~~~~----------------~~~   60 (180)
                      --||+|+|+.++|||||+.+|+...  ..                 +...|+......+..                +.+
T Consensus        17 IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~~   96 (341)
T d1n0ua2          17 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF   96 (341)
T ss_dssp             EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccce
Confidence            3469999999999999999996211  00                 011244433333322                346


Q ss_pred             EEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCC
Q 030289           61 SFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP  130 (180)
Q Consensus        61 ~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~  130 (180)
                      .+.++||||+..|.......++-+|++++|+|+.+.-..+...-| ....    ..+.|.++++||+|..
T Consensus        97 ~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~-~~a~----~~~~p~i~viNKiDr~  161 (341)
T d1n0ua2          97 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVL-RQAL----GERIKPVVVINKVDRA  161 (341)
T ss_dssp             EEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHH-HHHH----HTTCEEEEEEECHHHH
T ss_pred             EEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHH-HHHH----HcCCCeEEEEECcccc
Confidence            799999999999999999999999999999999865433333333 2222    2478999999999953

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=2.9e-15  Score=107.66  Aligned_cols=151  Identities=15%  Similarity=0.145  Sum_probs=90.5

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhc------CC--ccccccccc---------------------eeEEEEEE-------
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKL------GE--IVTTIPTIG---------------------FNVETVEY-------   57 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~------~~--~~~~~~t~~---------------------~~~~~~~~-------   57 (180)
                      .+.++|+|.|+||||||||+++|..      .+  .....|+..                     ........       
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg~  131 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA  131 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhcccccccccccccccccccc
Confidence            5689999999999999999999963      11  111111111                     11111100       


Q ss_pred             -------------cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEE
Q 030289           58 -------------KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFA  124 (180)
Q Consensus        58 -------------~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~  124 (180)
                                   .+..+.+++|.|.-...   -.+...+|.+++|.++...+.++....-+.++      .   -++|+
T Consensus       132 ~~~~~~~~~~~~~~g~d~iliEtvG~gq~e---~~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~------a---Di~Vv  199 (327)
T d2p67a1         132 SQRARELMLLCEAAGYDVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKKGLMEV------A---DLIVI  199 (327)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCHHHHHH------C---SEEEE
T ss_pred             hhhhhHHHHHHHhcCCCeEEEeeccccccc---hhhhhccceEEEEecCCCchhhhhhchhhhcc------c---cEEEE
Confidence                         13467788888754322   23556699999999887666666666655554      2   27889


Q ss_pred             ecCCCCCCCCH----hHHHhHhCC--CccCCcceEEEEeeccCCCChHHHHHHHHHHh
Q 030289          125 NKQDLPNAMSV----SEVTDKLGL--HSLRQRRWYIQAACATSGQGLYEGLDWLSSNV  176 (180)
Q Consensus       125 nK~D~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  176 (180)
                      ||+|.......    .++...+..  .....-..+++.|||.+|+|++++++.|.+..
T Consensus       200 NKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~  257 (327)
T d2p67a1         200 NKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK  257 (327)
T ss_dssp             CCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred             EeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHH
Confidence            99998763322    122222211  11122345899999999999999999997654

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.55  E-value=4.2e-16  Score=108.02  Aligned_cols=114  Identities=12%  Similarity=-0.013  Sum_probs=66.0

Q ss_pred             eEEEEEEcCCCCCChhh---HHhhc--cccCEEEEEEECCC---hhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289           60 VSFTVWDVGGQDKIRPL---WRHYF--QNTHGLIFVVDSND---RERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN  131 (180)
Q Consensus        60 ~~~~i~D~~G~~~~~~~---~~~~~--~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~  131 (180)
                      ..+.++|+||+..+...   .....  ...+.+++++|+..   +..............   .....|.++++||+|+..
T Consensus        95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~---~~~~~~~ivvinK~D~~~  171 (244)
T d1yrba1          95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLID---LRLGATTIPALNKVDLLS  171 (244)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHH---HHHTSCEEEEECCGGGCC
T ss_pred             cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHH---HHhCCCceeeeecccccc
Confidence            45999999998765322   11111  23568899998753   222211111111111   123678999999999887


Q ss_pred             CCCHhHHHh----------HhCC-Ccc--------------CCcceEEEEeeccCCCChHHHHHHHHHHh
Q 030289          132 AMSVSEVTD----------KLGL-HSL--------------RQRRWYIQAACATSGQGLYEGLDWLSSNV  176 (180)
Q Consensus       132 ~~~~~~~~~----------~~~~-~~~--------------~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  176 (180)
                      .........          .+.. ...              ....++++++||++|+|+++++..|.+..
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         172 EEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            432211110          0000 000              01245799999999999999999988753

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.52  E-value=7.6e-14  Score=100.07  Aligned_cols=151  Identities=12%  Similarity=0.128  Sum_probs=93.3

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcC-----C---ccccccc-------------------cc--eeEEEEE--------
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLG-----E---IVTTIPT-------------------IG--FNVETVE--------   56 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~-----~---~~~~~~t-------------------~~--~~~~~~~--------   56 (180)
                      .+.++|.|.|+||||||||+++|...     .   .....|+                   .+  +......        
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~gg~  128 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV  128 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeeccccccccccch
Confidence            56789999999999999999999731     0   0000000                   00  1111100        


Q ss_pred             ------------EcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEE
Q 030289           57 ------------YKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFA  124 (180)
Q Consensus        57 ------------~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~  124 (180)
                                  ..++.+.+++|.|.......   ...-+|..++|..+...+.++....-+.++         +-++|+
T Consensus       129 ~~~~~~~i~~~~~~g~d~iiiETVG~gq~e~~---~~~~~D~~v~v~~p~~GD~iQ~~k~gilE~---------aDi~vv  196 (323)
T d2qm8a1         129 AAKTRETMLLCEAAGFDVILVETVGVGQSETA---VADLTDFFLVLMLPGAGDELQGIKKGIFEL---------ADMIAV  196 (323)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEECSSSSCHHH---HHTTSSEEEEEECSCC------CCTTHHHH---------CSEEEE
T ss_pred             hHHHHHHHHhhccCCCCeEEEeehhhhhhhhh---hhcccceEEEEeeccchhhhhhhhhhHhhh---------hheeeE
Confidence                        02468899999997654433   334599999999998777666555544444         238999


Q ss_pred             ecCCCCCCCCHhH-----HHhHhCCCcc--CCcceEEEEeeccCCCChHHHHHHHHHHh
Q 030289          125 NKQDLPNAMSVSE-----VTDKLGLHSL--RQRRWYIQAACATSGQGLYEGLDWLSSNV  176 (180)
Q Consensus       125 nK~D~~~~~~~~~-----~~~~~~~~~~--~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  176 (180)
                      ||+|+........     ....+.....  .....+++.|||.++.|++++++++.+..
T Consensus       197 NKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~  255 (323)
T d2qm8a1         197 NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR  255 (323)
T ss_dssp             ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             eccccccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHH
Confidence            9999876543221     2222222222  22345799999999999999999997764

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.20  E-value=1.5e-11  Score=88.22  Aligned_cols=78  Identities=29%  Similarity=0.308  Sum_probs=44.6

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCC-cccccc--ccceeEEEEE------------------------EcCeEEEEEEcCC
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGE-IVTTIP--TIGFNVETVE------------------------YKNVSFTVWDVGG   69 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~-~~~~~~--t~~~~~~~~~------------------------~~~~~~~i~D~~G   69 (180)
                      ++|+++|.|+||||||+|+|++.+ .....|  |++.+.....                        .....+.++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            589999999999999999999766 222222  4443333221                        1225799999999


Q ss_pred             CCCC----hhhH---HhhccccCEEEEEEECC
Q 030289           70 QDKI----RPLW---RHYFQNTHGLIFVVDSN   94 (180)
Q Consensus        70 ~~~~----~~~~---~~~~~~~~~~i~v~d~~   94 (180)
                      -...    ....   ...++++|++++|+|+.
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~  112 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDAT  112 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETT
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEeccc
Confidence            4221    1122   23346899999999975

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.17  E-value=2e-10  Score=81.39  Aligned_cols=82  Identities=20%  Similarity=0.259  Sum_probs=60.5

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC--ccccc--cccceeEEEEEEc-----------------CeEEEEEEcCCCCC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE--IVTTI--PTIGFNVETVEYK-----------------NVSFTVWDVGGQDK   72 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~--~~~~~--~t~~~~~~~~~~~-----------------~~~~~i~D~~G~~~   72 (180)
                      ...++|+++|.|+||||||+|++++..  .....  .|++++...+.+.                 ...+.+.|+||...
T Consensus         8 ~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~   87 (296)
T d1ni3a1           8 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   87 (296)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence            467899999999999999999999654  23333  3677777777653                 35789999998221


Q ss_pred             -------ChhhHHhhccccCEEEEEEECCC
Q 030289           73 -------IRPLWRHYFQNTHGLIFVVDSND   95 (180)
Q Consensus        73 -------~~~~~~~~~~~~~~~i~v~d~~~   95 (180)
                             ........++++|+++.|+|+.+
T Consensus        88 gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          88 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccccccccHHHHHHHhhccceeEEEEeccC
Confidence                   22335556789999999998754

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.15  E-value=1.3e-10  Score=82.46  Aligned_cols=113  Identities=18%  Similarity=0.144  Sum_probs=70.1

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCCc--cccccccc-eeEEEE-------------------------------------
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGEI--VTTIPTIG-FNVETV-------------------------------------   55 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~~--~~~~~t~~-~~~~~~-------------------------------------   55 (180)
                      ..+|+|+|..++|||||+|+|++.++  ....+++. +....+                                     
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  105 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhC
Confidence            45799999999999999999998762  22233332 111010                                     


Q ss_pred             ------------EE---cCeEEEEEEcCCCCC--------C-----hhhHHhhccccCEE-EEEEECCChhhHHHHHHHH
Q 030289           56 ------------EY---KNVSFTVWDVGGQDK--------I-----RPLWRHYFQNTHGL-IFVVDSNDRERIGEAKDEL  106 (180)
Q Consensus        56 ------------~~---~~~~~~i~D~~G~~~--------~-----~~~~~~~~~~~~~~-i~v~d~~~~~~~~~~~~~~  106 (180)
                                  ..   ....+.++|+||-..        .     ..+...|+..++.+ ++|.++...-+.+....+.
T Consensus       106 ~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~  185 (299)
T d2akab1         106 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIA  185 (299)
T ss_dssp             STTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHH
T ss_pred             CCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHH
Confidence                        00   112488999999321        1     24466677777755 5555665444444555555


Q ss_pred             HHHhcccccCCCeEEEEEecCCCCCC
Q 030289          107 HRMLSEDELREAVLLVFANKQDLPNA  132 (180)
Q Consensus       107 ~~~~~~~~~~~~~iiiv~nK~D~~~~  132 (180)
                      ..+..    ...++++|+||+|..++
T Consensus       186 ~~~~~----~~~r~i~Vltk~D~~~~  207 (299)
T d2akab1         186 KEVDP----QGQRTIGVITKLDLMDE  207 (299)
T ss_dssp             HHHCT----TCSSEEEEEECGGGSCT
T ss_pred             HHhCc----CCCceeeEEeccccccc
Confidence            55422    34579999999998764

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.12  E-value=9.1e-11  Score=82.46  Aligned_cols=78  Identities=21%  Similarity=0.201  Sum_probs=55.9

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC-c-ccc-ccccceeEEEEEEc-----------------CeEEEEEEcCCCCCChh
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE-I-VTT-IPTIGFNVETVEYK-----------------NVSFTVWDVGGQDKIRP   75 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~-~-~~~-~~t~~~~~~~~~~~-----------------~~~~~i~D~~G~~~~~~   75 (180)
                      .+||+++|.|+||||||+|+++..+ . ..| ..|+.++...+.+.                 ...+.++|+||--.-.+
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            4799999999999999999999776 2 222 23666666666552                 24689999999544322


Q ss_pred             -------hHHhhccccCEEEEEEEC
Q 030289           76 -------LWRHYFQNTHGLIFVVDS   93 (180)
Q Consensus        76 -------~~~~~~~~~~~~i~v~d~   93 (180)
                             .....++++|+++.|+|+
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~  106 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRC  106 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEEC
T ss_pred             cCCCccHHHHHHHHhccceEEEeec
Confidence                   234556789999999986

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.06  E-value=7.7e-10  Score=78.65  Aligned_cols=68  Identities=21%  Similarity=0.237  Sum_probs=42.7

Q ss_pred             EEEEEEcCCCCC-------------ChhhHHhhccccCEEEEEE-ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEec
Q 030289           61 SFTVWDVGGQDK-------------IRPLWRHYFQNTHGLIFVV-DSNDRERIGEAKDELHRMLSEDELREAVLLVFANK  126 (180)
Q Consensus        61 ~~~i~D~~G~~~-------------~~~~~~~~~~~~~~~i~v~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK  126 (180)
                      .+.++|+||-..             ...+...|+.+++.+++++ +....-..+....+...+..    ....+++|+||
T Consensus       132 ~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~----~~~r~i~Vitk  207 (306)
T d1jwyb_         132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP----EGKRTIGVITK  207 (306)
T ss_dssp             SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS----SCSSEEEEEEC
T ss_pred             CceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHhCc----CCCeEEEEEec
Confidence            578999999432             1345777888999876666 43322222333444444421    34579999999


Q ss_pred             CCCCCC
Q 030289          127 QDLPNA  132 (180)
Q Consensus       127 ~D~~~~  132 (180)
                      +|....
T Consensus       208 ~D~~~~  213 (306)
T d1jwyb_         208 LDLMDK  213 (306)
T ss_dssp             TTSSCS
T ss_pred             cccccc
Confidence            998653

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.87  E-value=6e-10  Score=78.00  Aligned_cols=58  Identities=22%  Similarity=0.372  Sum_probs=37.6

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhhcCCccccccccce--eEEEEEEcCeEEEEEEcCCC
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF--NVETVEYKNVSFTVWDVGGQ   70 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~--~~~~~~~~~~~~~i~D~~G~   70 (180)
                      .....++|+|+|.|+||||||+|+|.+.......++-|.  ....+. .+-.+.++||||-
T Consensus       108 ~~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~i~-~~~~~~l~DTPGi  167 (273)
T d1puja_         108 VKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVK-VGKELELLDTPGI  167 (273)
T ss_dssp             CCCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEE-ETTTEEEEECCCC
T ss_pred             CCCCceEEEEEecCccchhhhhhhhhccceEEECCcccccccceEEE-CCCCeEEecCCCc
Confidence            345689999999999999999999998773333332221  222222 2346999999993

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.65  E-value=1.4e-08  Score=68.39  Aligned_cols=35  Identities=29%  Similarity=0.377  Sum_probs=27.6

Q ss_pred             hHHHHhhhcccCccEEEEEcCCCCChHHHHHHhhcCC
Q 030289            4 VISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus         4 ~~~~~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      -+..++..++  .-..+++|++|||||||+|+|.+..
T Consensus        85 g~~~L~~~l~--~kt~~~~G~SGVGKSTLiN~L~~~~  119 (225)
T d1u0la2          85 GIEELKEYLK--GKISTMAGLSGVGKSSLLNAINPGL  119 (225)
T ss_dssp             THHHHHHHHS--SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             hHhhHHHHhc--CCeEEEECCCCCCHHHHHHhhcchh
Confidence            3556666663  4577999999999999999998764

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.47  E-value=1.7e-08  Score=68.20  Aligned_cols=31  Identities=16%  Similarity=0.304  Sum_probs=22.8

Q ss_pred             HhhhcccCccEEEEEcCCCCChHHHHHHhhcCC
Q 030289            8 LKMLFARKEMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus         8 ~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      +...++  .-..+++|++|||||||+|+|.+..
T Consensus        91 L~~~l~--~~~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          91 IIPHFQ--DKTTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             TGGGGT--TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred             HHHhhc--cceEEEECCCCccHHHHHHhhccHh
Confidence            444443  3456899999999999999999764

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.40  E-value=2.2e-07  Score=64.63  Aligned_cols=90  Identities=12%  Similarity=0.068  Sum_probs=63.9

Q ss_pred             hHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEE
Q 030289           76 LWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQ  155 (180)
Q Consensus        76 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (180)
                      .....++.+|++++|+|+.++-+.  ....+..++     .+.|.++|+||+|+.+....+++.+.+..     .+...+
T Consensus         8 ~i~~~i~~~DvIl~V~DaR~P~ss--~~~~l~~~~-----~~Kp~IlVlNK~DLv~~~~~~~w~~~f~~-----~~~~~i   75 (273)
T d1puja_           8 EVTEKLKLIDIVYELVDARIPMSS--RNPMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHFEN-----QGIRSL   75 (273)
T ss_dssp             HHHHHGGGCSEEEEEEETTSTTTT--SCHHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHHHT-----TTCCEE
T ss_pred             HHHHHHHhCCEEEEEEECCCCCCC--CCHHHHHHH-----cCCCeEEEEECccCCchHHHHHHHHHHHh-----cCCccc
Confidence            355678899999999999866432  223334443     25789999999999876555555555432     234678


Q ss_pred             EeeccCCCChHHHHHHHHHHhh
Q 030289          156 AACATSGQGLYEGLDWLSSNVS  177 (180)
Q Consensus       156 ~~Sa~~~~~i~~~~~~l~~~~~  177 (180)
                      .+|+.++.++.++...+.+.+.
T Consensus        76 ~isa~~~~~~~~~~~~~~~~l~   97 (273)
T d1puja_          76 SINSVNGQGLNQIVPASKEILQ   97 (273)
T ss_dssp             ECCTTTCTTGGGHHHHHHHHHH
T ss_pred             eeecccCCCccccchhhhhhhh
Confidence            9999999999888877766554

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.38  E-value=2.6e-07  Score=61.53  Aligned_cols=66  Identities=12%  Similarity=0.118  Sum_probs=38.4

Q ss_pred             cCeEEEEEEcCCCCCChhh----HHhh--ccccCEEEEEEECCChh-hHHHHHHHHHHHhcccccCCCeEEEEEecCCCC
Q 030289           58 KNVSFTVWDVGGQDKIRPL----WRHY--FQNTHGLIFVVDSNDRE-RIGEAKDELHRMLSEDELREAVLLVFANKQDLP  130 (180)
Q Consensus        58 ~~~~~~i~D~~G~~~~~~~----~~~~--~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~  130 (180)
                      .+.++.++||+|....+..    +..+  ..+.+-+++|.|+.... .+.....+...+ ..       --+++||.|..
T Consensus        91 ~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~-~~-------~~~I~TKlDe~  162 (207)
T d1ls1a2          91 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKV-GV-------TGLVLTKLDGD  162 (207)
T ss_dssp             HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHT-CC-------CEEEEECGGGC
T ss_pred             ccCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhC-CC-------CeeEEeecCcc
Confidence            3457999999996655332    1111  12468899999986543 333222222222 21       24788999965


Q ss_pred             C
Q 030289          131 N  131 (180)
Q Consensus       131 ~  131 (180)
                      .
T Consensus       163 ~  163 (207)
T d1ls1a2         163 A  163 (207)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.35  E-value=4.2e-07  Score=60.40  Aligned_cols=110  Identities=20%  Similarity=0.171  Sum_probs=62.6

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC-----cc------cccc-----------ccceeEEEEE---------------
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE-----IV------TTIP-----------TIGFNVETVE---------------   56 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~-----~~------~~~~-----------t~~~~~~~~~---------------   56 (180)
                      .+..-|+++|++||||||.+-+|...-     .+      .+.+           ..++.+....               
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~~   83 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQA   83 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTHHHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccccccchhhHhhcccccCceEEeccCCccHHHHHHHHHHH
Confidence            345567899999999999987774311     00      0000           1111111111               


Q ss_pred             --EcCeEEEEEEcCCCCCChhh----HHhhc--------cccCEEEEEEECCC-hhhHHHHHHHHHHHhcccccCCCeEE
Q 030289           57 --YKNVSFTVWDVGGQDKIRPL----WRHYF--------QNTHGLIFVVDSND-RERIGEAKDELHRMLSEDELREAVLL  121 (180)
Q Consensus        57 --~~~~~~~i~D~~G~~~~~~~----~~~~~--------~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~ii  121 (180)
                        ..+.++.++||+|...+...    ...+.        ...+-.++|+|++. .+........+..+ ..       --
T Consensus        84 ~~~~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-~~-------~~  155 (207)
T d1okkd2          84 MKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV-GL-------TG  155 (207)
T ss_dssp             HHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHH-CC-------SE
T ss_pred             HHHCCCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhcc-CC-------ce
Confidence              02467999999997655332    11111        13467899999874 44455555554444 11       25


Q ss_pred             EEEecCCCCC
Q 030289          122 VFANKQDLPN  131 (180)
Q Consensus       122 iv~nK~D~~~  131 (180)
                      +++||.|...
T Consensus       156 lI~TKlDet~  165 (207)
T d1okkd2         156 VIVTKLDGTA  165 (207)
T ss_dssp             EEEECTTSSC
T ss_pred             EEEeccCCCC
Confidence            6899999754

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.34  E-value=1.8e-06  Score=58.13  Aligned_cols=22  Identities=36%  Similarity=0.496  Sum_probs=19.2

Q ss_pred             EEEEcCCCCChHHHHHHhhcCC
Q 030289           19 ILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        19 i~i~G~~~~GKStli~~l~~~~   40 (180)
                      .+|.|.-|||||||+++++...
T Consensus         6 ~iitGFLGaGKTTll~~lL~~~   27 (222)
T d1nija1           6 TLLTGFLGAGKTTLLRHILNEQ   27 (222)
T ss_dssp             EEEEESSSSSCHHHHHHHHHSC
T ss_pred             EEEeeCCCCCHHHHHHHHHhcC
Confidence            5788999999999999998643

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.33  E-value=2.5e-07  Score=62.11  Aligned_cols=87  Identities=21%  Similarity=0.158  Sum_probs=58.9

Q ss_pred             hccccCEEEEEEECCChh-hHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEee
Q 030289           80 YFQNTHGLIFVVDSNDRE-RIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAAC  158 (180)
Q Consensus        80 ~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  158 (180)
                      ...+.|.+++|+.+.+|+ +...+..++....    ..+++.++|+||+|+.++...+.+.....   ......+++.+|
T Consensus         7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~----~~~i~pvIvlnK~DL~~~~~~~~~~~~~~---~~~~~~~v~~vS   79 (225)
T d1u0la2           7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAE----KNELETVMVINKMDLYDEDDLRKVRELEE---IYSGLYPIVKTS   79 (225)
T ss_dssp             TEESCCEEEEEECSSTTCCCHHHHHHHHHHHH----HTTCEEEEEECCGGGCCHHHHHHHHHHHH---HHTTTSCEEECC
T ss_pred             CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHH----HcCCCEEEEEeCcccCCHHHHHHHHHhhc---ccccceeEEEec
Confidence            346789999999987654 3445555554442    35789999999999987543333332211   111234789999


Q ss_pred             ccCCCChHHHHHHHH
Q 030289          159 ATSGQGLYEGLDWLS  173 (180)
Q Consensus       159 a~~~~~i~~~~~~l~  173 (180)
                      ++++.|++++...+.
T Consensus        80 a~~~~g~~~L~~~l~   94 (225)
T d1u0la2          80 AKTGMGIEELKEYLK   94 (225)
T ss_dssp             TTTCTTHHHHHHHHS
T ss_pred             cccchhHhhHHHHhc
Confidence            999999999988763

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.32  E-value=2.3e-06  Score=56.96  Aligned_cols=137  Identities=21%  Similarity=0.205  Sum_probs=73.0

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCC-----cc------ccc-----------cccceeEEEEE--------------
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGE-----IV------TTI-----------PTIGFNVETVE--------------   56 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~-----~~------~~~-----------~t~~~~~~~~~--------------   56 (180)
                      +.++.-|+++|++||||||.+-+|...-     .+      .+.           ...++......              
T Consensus         8 ~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~   87 (213)
T d1vmaa2           8 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA   87 (213)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccccchhHHHHHHhhhcCccccccCCCCcHHHHHHHHHH
Confidence            4566678899999999999987775311     00      000           01111111111              


Q ss_pred             ---EcCeEEEEEEcCCCCCChhhH----Hhhcc--------ccCEEEEEEECCCh-hhHHHHHHHHHHHhcccccCCCeE
Q 030289           57 ---YKNVSFTVWDVGGQDKIRPLW----RHYFQ--------NTHGLIFVVDSNDR-ERIGEAKDELHRMLSEDELREAVL  120 (180)
Q Consensus        57 ---~~~~~~~i~D~~G~~~~~~~~----~~~~~--------~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~i  120 (180)
                         ..+.++.++||+|...++...    ..+.+        ..+-.++|+|+... +.+......+..+        -+-
T Consensus        88 ~~~~~~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~--------~~~  159 (213)
T d1vmaa2          88 HALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAV--------NVT  159 (213)
T ss_dssp             HHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHHHHHS--------CCC
T ss_pred             HHHHcCCCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCcchhhhhhhhcccc--------CCc
Confidence               025679999999976654331    11111        13568999998632 3333333333322        123


Q ss_pred             EEEEecCCCCCCCC-HhHHHhHhCCCccCCcceEEEEeeccCCCChHH
Q 030289          121 LVFANKQDLPNAMS-VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYE  167 (180)
Q Consensus       121 iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  167 (180)
                      -+++||.|.....- .-.+....+        .|+..++  +|+++++
T Consensus       160 ~lI~TKlDe~~~~G~~l~~~~~~~--------~Pi~~i~--~Gq~v~D  197 (213)
T d1vmaa2         160 GIILTKLDGTAKGGITLAIARELG--------IPIKFIG--VGEKAED  197 (213)
T ss_dssp             EEEEECGGGCSCTTHHHHHHHHHC--------CCEEEEE--CSSSGGG
T ss_pred             eEEEecccCCCcccHHHHHHHHHC--------CCEEEEe--CCCCccc
Confidence            67899999754321 112222323        3566665  5666654

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.22  E-value=6.6e-07  Score=59.62  Aligned_cols=93  Identities=11%  Similarity=0.097  Sum_probs=48.5

Q ss_pred             cCeEEEEEEcCCCCCChh--h----HHhhc--cccCEEEEEEECCCh-hhHHHHHHHHHHHhcccccCCCeEEEEEecCC
Q 030289           58 KNVSFTVWDVGGQDKIRP--L----WRHYF--QNTHGLIFVVDSNDR-ERIGEAKDELHRMLSEDELREAVLLVFANKQD  128 (180)
Q Consensus        58 ~~~~~~i~D~~G~~~~~~--~----~~~~~--~~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D  128 (180)
                      .+.++.++||+|...+..  .    ...+.  -+.+-+++|+++... +.+......+...       ++ --+++||.|
T Consensus        93 ~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~~~~-------~~-~~lI~TKlD  164 (211)
T d1j8yf2          93 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQAS-------KI-GTIIITKMD  164 (211)
T ss_dssp             TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHHC-------TT-EEEEEECTT
T ss_pred             cCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhhccc-------Cc-ceEEEeccc
Confidence            345899999999654431  1    11111  135678999998643 3333333322221       11 246799999


Q ss_pred             CCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHH
Q 030289          129 LPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYE  167 (180)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  167 (180)
                      .....  -.+....     ...+.|+..++  +|++|++
T Consensus       165 et~~~--G~~l~~~-----~~~~lPi~~it--~Gq~v~D  194 (211)
T d1j8yf2         165 GTAKG--GGALSAV-----AATGATIKFIG--TGEKIDE  194 (211)
T ss_dssp             SCSCH--HHHHHHH-----HTTTCCEEEEE--CSSSTTC
T ss_pred             CCCcc--cHHHHHH-----HHHCcCEEEEe--CCCCccc
Confidence            76531  1111111     12234566666  5776654

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.21  E-value=3.2e-07  Score=59.44  Aligned_cols=22  Identities=36%  Similarity=0.588  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCChHHHHHHhhc
Q 030289           17 MRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~   38 (180)
                      +||+++|++|+|||||++.+++
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~   22 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHh
Confidence            5899999999999999999875

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.18  E-value=8.2e-07  Score=59.08  Aligned_cols=91  Identities=14%  Similarity=0.207  Sum_probs=50.2

Q ss_pred             CeEEEEEEcCCCCCChhh----HH---hhcc-----ccCEEEEEEECCC-hhhHHHHHHHHHHHhcccccCCCeEEEEEe
Q 030289           59 NVSFTVWDVGGQDKIRPL----WR---HYFQ-----NTHGLIFVVDSND-RERIGEAKDELHRMLSEDELREAVLLVFAN  125 (180)
Q Consensus        59 ~~~~~i~D~~G~~~~~~~----~~---~~~~-----~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~iiiv~n  125 (180)
                      +.++.++||+|....+..    ..   ...+     ..+-.++|.|+.. .+........+..+ .       +--+++|
T Consensus        91 ~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-~-------~~~lIlT  162 (211)
T d2qy9a2          91 NIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV-G-------LTGITLT  162 (211)
T ss_dssp             TCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHS-C-------CCEEEEE
T ss_pred             CCCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhcc-C-------CceEEEe
Confidence            457899999996544322    11   1222     1357899999864 34444444444332 1       2367899


Q ss_pred             cCCCCCCCC-HhHHHhHhCCCccCCcceEEEEeeccCCCChHH
Q 030289          126 KQDLPNAMS-VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYE  167 (180)
Q Consensus       126 K~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  167 (180)
                      |.|.....- .-.+....        +.|+..++  +|++|++
T Consensus       163 KlDe~~~~G~~l~~~~~~--------~~Pi~~i~--~Gq~v~D  195 (211)
T d2qy9a2         163 KLDGTAKGGVIFSVADQF--------GIPIRYIG--VGERIED  195 (211)
T ss_dssp             CCTTCTTTTHHHHHHHHH--------CCCEEEEE--CSSSGGG
T ss_pred             ecCCCCCccHHHHHHHHH--------CCCEEEEe--CCCCccc
Confidence            999765322 11222232        34566666  6777754

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.10  E-value=2e-07  Score=62.77  Aligned_cols=88  Identities=9%  Similarity=0.080  Sum_probs=59.1

Q ss_pred             hccccCEEEEEEECCChh-hHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEee
Q 030289           80 YFQNTHGLIFVVDSNDRE-RIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAAC  158 (180)
Q Consensus        80 ~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  158 (180)
                      ...+.|.+++|+++.+++ +...+..++....    ..+++.++|+||+|+.++.+..+....+. ......+.+++.+|
T Consensus         7 ~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~----~~~i~pvIvlnK~DL~~~~~~~~~~~~~~-~~y~~~g~~v~~~S   81 (231)
T d1t9ha2           7 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVE----ANDIQPIICITKMDLIEDQDTEDTIQAYA-EDYRNIGYDVYLTS   81 (231)
T ss_dssp             TEECCCEEEEEEESTTTTCCHHHHHHHHHHHH----TTTCEEEEEEECGGGCCCHHHHHHHHHHH-HHHHHHTCCEEECC
T ss_pred             CccccCEEEEEEECCCCCCCHHHHHHHHHHHH----HcCCCEEEEEecccccccHHHHHHHHHHH-HHHhhccccceeee
Confidence            346789999999987653 4455566555442    35788999999999987543332222111 11123456899999


Q ss_pred             ccCCCChHHHHHHH
Q 030289          159 ATSGQGLYEGLDWL  172 (180)
Q Consensus       159 a~~~~~i~~~~~~l  172 (180)
                      +.++.|++++..++
T Consensus        82 a~~~~gl~~L~~~l   95 (231)
T d1t9ha2          82 SKDQDSLADIIPHF   95 (231)
T ss_dssp             HHHHTTCTTTGGGG
T ss_pred             cCChhHHHHHHHhh
Confidence            99999999887655

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.08  E-value=6.2e-07  Score=58.20  Aligned_cols=22  Identities=23%  Similarity=0.483  Sum_probs=20.1

Q ss_pred             cEEEEEcCCCCChHHHHHHhhc
Q 030289           17 MRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~   38 (180)
                      -+|+|.|++|||||||+++|..
T Consensus         8 K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999974

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=98.07  E-value=1.3e-06  Score=56.20  Aligned_cols=25  Identities=28%  Similarity=0.437  Sum_probs=22.5

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      .+.++|++.|++||||||+.+.|..
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            4678999999999999999998864

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=98.05  E-value=1.2e-06  Score=56.23  Aligned_cols=24  Identities=33%  Similarity=0.318  Sum_probs=21.1

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhc
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      -..||+++|++||||||+.++|..
T Consensus         3 ~~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           3 LLPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999998863

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.98  E-value=1.7e-06  Score=56.61  Aligned_cols=24  Identities=25%  Similarity=0.401  Sum_probs=21.4

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhc
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ++++|+|+|++||||||+.+.|..
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            567899999999999999988863

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.96  E-value=1.9e-06  Score=54.14  Aligned_cols=20  Identities=30%  Similarity=0.424  Sum_probs=18.1

Q ss_pred             EEEEcCCCCChHHHHHHhhc
Q 030289           19 ILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        19 i~i~G~~~~GKStli~~l~~   38 (180)
                      |++.|++||||||++++|..
T Consensus         5 Iii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77899999999999999864

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.96  E-value=2.6e-06  Score=55.87  Aligned_cols=26  Identities=19%  Similarity=0.387  Sum_probs=23.5

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhc
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      +.+-++|+++|+|||||||+...|..
T Consensus         3 ~~r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           3 SARLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             SSCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHHH
Confidence            56789999999999999999998874

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.95  E-value=2.5e-06  Score=55.82  Aligned_cols=23  Identities=39%  Similarity=0.473  Sum_probs=21.2

Q ss_pred             CccEEEEEcCCCCChHHHHHHhh
Q 030289           15 KEMRILMVGLDAAGKTTILYKLK   37 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~   37 (180)
                      +.++|+++|+|||||||+...|.
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La   24 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLA   24 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHH
Confidence            46899999999999999998886

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.94  E-value=2.2e-06  Score=54.77  Aligned_cols=21  Identities=33%  Similarity=0.395  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHhhc
Q 030289           18 RILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~   38 (180)
                      -++|+|++|||||||+++|..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999999984

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.94  E-value=2.5e-06  Score=55.28  Aligned_cols=22  Identities=36%  Similarity=0.530  Sum_probs=19.6

Q ss_pred             cEEEEEcCCCCChHHHHHHhhc
Q 030289           17 MRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~   38 (180)
                      +||+|+|+|||||||+.+.|..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999988853

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.89  E-value=3.3e-06  Score=54.75  Aligned_cols=22  Identities=45%  Similarity=0.579  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCCChHHHHHHhhc
Q 030289           17 MRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~   38 (180)
                      +||+|+|+|||||||+.+.|..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998863

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.89  E-value=3.5e-06  Score=54.73  Aligned_cols=22  Identities=36%  Similarity=0.514  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCChHHHHHHhhc
Q 030289           17 MRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ++|+|+|+|||||||+...|..
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999988863

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.85  E-value=4.5e-06  Score=54.69  Aligned_cols=25  Identities=20%  Similarity=0.205  Sum_probs=20.8

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      .++..|+|+|+|||||||++++|..
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3445678999999999999998864

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.82  E-value=5.1e-06  Score=53.76  Aligned_cols=22  Identities=36%  Similarity=0.445  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCCChHHHHHHhhc
Q 030289           17 MRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~   38 (180)
                      +||+|+|+|||||||..+.|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999988863

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.81  E-value=6e-06  Score=53.53  Aligned_cols=23  Identities=30%  Similarity=0.473  Sum_probs=20.8

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhc
Q 030289           16 EMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      .++|+|+|++||||||+.+.|..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999988863

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=4.6e-05  Score=52.73  Aligned_cols=58  Identities=21%  Similarity=0.212  Sum_probs=39.9

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcCC--ccc----cccccceeEEEEEE---cCeEEEEEEcCCC
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLGE--IVT----TIPTIGFNVETVEY---KNVSFTVWDVGGQ   70 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~~--~~~----~~~t~~~~~~~~~~---~~~~~~i~D~~G~   70 (180)
                      ..+-.=|.|+|+.++|||+|+|.|++..  +..    ...|.|+-......   .+..+.++||.|.
T Consensus        29 ~~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~   95 (277)
T d1f5na2          29 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGL   95 (277)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCB
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccc
Confidence            4444556699999999999999999765  211    12366654433332   5668999999994

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.77  E-value=6.1e-06  Score=52.65  Aligned_cols=21  Identities=24%  Similarity=0.346  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChHHHHHHhhc
Q 030289           18 RILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~   38 (180)
                      -|++.|++||||||++++|..
T Consensus         4 lI~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            388999999999999999874

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.75  E-value=6.5e-06  Score=51.99  Aligned_cols=21  Identities=43%  Similarity=0.505  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHhhc
Q 030289           18 RILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~   38 (180)
                      +|+++|++||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999988864

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.69  E-value=9.8e-06  Score=51.67  Aligned_cols=21  Identities=33%  Similarity=0.501  Sum_probs=18.3

Q ss_pred             EE-EEEcCCCCChHHHHHHhhc
Q 030289           18 RI-LMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        18 ~i-~i~G~~~~GKStli~~l~~   38 (180)
                      || .|+|.+|||||||+++|..
T Consensus         2 kii~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHH
Confidence            45 5999999999999999974

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.67  E-value=1.3e-05  Score=51.36  Aligned_cols=24  Identities=25%  Similarity=0.440  Sum_probs=20.8

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhh
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLK   37 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~   37 (180)
                      .+.+-|.++|++||||||+.+.|.
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La   27 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQ   27 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            456789999999999999998776

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.67  E-value=1.4e-05  Score=53.34  Aligned_cols=25  Identities=24%  Similarity=0.345  Sum_probs=22.1

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      |+++.|+|-||+||||||....|..
T Consensus         1 Mk~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           1 MKTIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH
Confidence            5678999999999999999988863

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.66  E-value=1.8e-05  Score=51.50  Aligned_cols=30  Identities=23%  Similarity=0.284  Sum_probs=24.3

Q ss_pred             hhhcccCccEEEEEcCCCCChHHHHHHhhc
Q 030289            9 KMLFARKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus         9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      .+.-+..++-|+|-|++|||||||.++|..
T Consensus        15 ~~~~~~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          15 LAIKTAGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             HTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             HhccCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            344456677788999999999999999863

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.66  E-value=1.2e-05  Score=53.09  Aligned_cols=25  Identities=24%  Similarity=0.206  Sum_probs=21.0

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      .=.++++|++|||||||++.+++--
T Consensus        27 Gei~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          27 GNVVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCChHHHHHHHHhccc
Confidence            3357899999999999999998644

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=1.1e-05  Score=51.89  Aligned_cols=20  Identities=30%  Similarity=0.551  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCChHHHHHHhh
Q 030289           18 RILMVGLDAAGKTTILYKLK   37 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~   37 (180)
                      +|.|.|++|+|||||+..+.
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~   22 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKAS   22 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            58999999999999998886

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.65  E-value=1.3e-05  Score=54.31  Aligned_cols=26  Identities=23%  Similarity=0.250  Sum_probs=21.8

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      .+.=+++|+|++|||||||++.+.+-
T Consensus        27 ~~Ge~vaIvG~sGsGKSTLl~ll~gl   52 (241)
T d2pmka1          27 KQGEVIGIVGRSGSGKSTLTKLIQRF   52 (241)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhc
Confidence            34567999999999999999888753

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.64  E-value=1.1e-05  Score=51.43  Aligned_cols=21  Identities=38%  Similarity=0.586  Sum_probs=18.6

Q ss_pred             cEEEEEcCCCCChHHHHHHhh
Q 030289           17 MRILMVGLDAAGKTTILYKLK   37 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~   37 (180)
                      .||+++|++||||||+.+.|.
T Consensus         2 p~IvliG~~G~GKSTig~~La   22 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLA   22 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHH
Confidence            479999999999999987775

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=1.4e-05  Score=52.26  Aligned_cols=23  Identities=22%  Similarity=0.288  Sum_probs=20.1

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhc
Q 030289           16 EMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ++.|+|+|+|||||||....|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999988864

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.64  E-value=1.2e-05  Score=51.05  Aligned_cols=20  Identities=30%  Similarity=0.580  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCChHHHHHHhh
Q 030289           18 RILMVGLDAAGKTTILYKLK   37 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~   37 (180)
                      +|+++|++||||||+...|.
T Consensus         2 ~I~liG~~GsGKsTi~k~La   21 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALA   21 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHH
Confidence            68999999999999998775

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.63  E-value=1.3e-05  Score=52.21  Aligned_cols=21  Identities=38%  Similarity=0.534  Sum_probs=19.0

Q ss_pred             EEEEcCCCCChHHHHHHhhcC
Q 030289           19 ILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        19 i~i~G~~~~GKStli~~l~~~   39 (180)
                      |+|+||+||||+||+++|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            899999999999999999653

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.62  E-value=1.6e-05  Score=52.45  Aligned_cols=23  Identities=52%  Similarity=0.540  Sum_probs=20.0

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhc
Q 030289           16 EMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      +.=|+++|.|||||||+.++|..
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            34588999999999999999974

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.62  E-value=1.4e-05  Score=51.74  Aligned_cols=21  Identities=29%  Similarity=0.493  Sum_probs=18.6

Q ss_pred             EEEEcCCCCChHHHHHHhhcC
Q 030289           19 ILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        19 i~i~G~~~~GKStli~~l~~~   39 (180)
                      |+++||+|||||||++.|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            789999999999999999643

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.61  E-value=2e-05  Score=50.69  Aligned_cols=27  Identities=22%  Similarity=0.394  Sum_probs=22.7

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhhc
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ...+..=|+++|++||||||++.++..
T Consensus        10 ~~~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          10 LSPNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SCSSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            345667889999999999999999864

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.60  E-value=1.5e-05  Score=51.37  Aligned_cols=20  Identities=20%  Similarity=0.238  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCChHHHHHHhh
Q 030289           18 RILMVGLDAAGKTTILYKLK   37 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~   37 (180)
                      -|+|.|++||||||++++|.
T Consensus         3 iI~i~G~~GsGKsT~~~~L~   22 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAM   22 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            37789999999999998885

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.60  E-value=1.7e-05  Score=53.80  Aligned_cols=24  Identities=29%  Similarity=0.357  Sum_probs=20.7

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhc
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      +.=.++|+|++|||||||++.+.+
T Consensus        27 ~Ge~vaivG~sGsGKSTLl~ll~g   50 (242)
T d1mv5a_          27 PNSIIAFAGPSGGGKSTIFSLLER   50 (242)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            445789999999999999988875

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.59  E-value=1.6e-05  Score=53.43  Aligned_cols=22  Identities=27%  Similarity=0.394  Sum_probs=19.3

Q ss_pred             cEEEEEcCCCCChHHHHHHhhc
Q 030289           17 MRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~   38 (180)
                      =-++++|++|||||||++.+.+
T Consensus        27 ei~~liGpsGsGKSTLl~~i~G   48 (232)
T d2awna2          27 EFVVFVGPSGCGKSTLLRMIAG   48 (232)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCChHHHHHHHHhc
Confidence            3578999999999999998865

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.58  E-value=1.8e-05  Score=54.07  Aligned_cols=24  Identities=25%  Similarity=0.350  Sum_probs=20.8

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhc
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      +.=.++|+|++|||||||++.+++
T Consensus        40 ~Ge~iaivG~sGsGKSTLl~ll~g   63 (253)
T d3b60a1          40 AGKTVALVGRSGSGKSTIASLITR   63 (253)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCChHHHHHHHHhc
Confidence            345799999999999999988875

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=1.8e-05  Score=51.24  Aligned_cols=21  Identities=19%  Similarity=0.390  Sum_probs=19.1

Q ss_pred             EEEEcCCCCChHHHHHHhhcC
Q 030289           19 ILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        19 i~i~G~~~~GKStli~~l~~~   39 (180)
                      |+|+||+|+||+||+++|...
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            889999999999999999743

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=2e-05  Score=53.77  Aligned_cols=25  Identities=28%  Similarity=0.344  Sum_probs=21.2

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      .+.=.++|+|++|||||||++.+.+
T Consensus        38 ~~Ge~vaivG~sGsGKSTLl~li~g   62 (251)
T d1jj7a_          38 RPGEVTALVGPNGSGKSTVAALLQN   62 (251)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhc
Confidence            3455789999999999999988875

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.57  E-value=1.9e-05  Score=53.08  Aligned_cols=25  Identities=20%  Similarity=0.279  Sum_probs=20.5

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      .=-++++|++|||||||++.+.+-.
T Consensus        31 Ge~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          31 GEFVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCcchhhHhccCCC
Confidence            3357899999999999998777543

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.56  E-value=1.9e-05  Score=53.35  Aligned_cols=23  Identities=22%  Similarity=0.202  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCC
Q 030289           18 RILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      -++++||+|||||||++.+.+-.
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            46799999999999998887643

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=97.55  E-value=2e-05  Score=53.45  Aligned_cols=23  Identities=30%  Similarity=0.340  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCC
Q 030289           18 RILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      -++++|++|||||||++.+++-.
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999998654

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.55  E-value=2.1e-05  Score=50.20  Aligned_cols=22  Identities=32%  Similarity=0.327  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCChHHHHHHhhcC
Q 030289           18 RILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~   39 (180)
                      -|++.|++||||||+.+.|...
T Consensus         6 iI~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           6 ILLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3779999999999999888643

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.55  E-value=2e-05  Score=53.20  Aligned_cols=24  Identities=29%  Similarity=0.307  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCC
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      =-++++|++|||||||++.+.+-.
T Consensus        33 e~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          33 EFLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCChHHHHHHHHHcCC
Confidence            357899999999999999887643

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.54  E-value=4.5e-05  Score=49.78  Aligned_cols=25  Identities=28%  Similarity=0.399  Sum_probs=22.3

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      +.+-+++++|++|+|||++++.|..
T Consensus        41 ~~k~n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          41 RTKNNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHH
T ss_pred             cCCCCeEEEecCCcccHHHHHHHHH
Confidence            5777999999999999999988864

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.54  E-value=2.1e-05  Score=51.37  Aligned_cols=20  Identities=40%  Similarity=0.587  Sum_probs=18.3

Q ss_pred             EEEEcCCCCChHHHHHHhhc
Q 030289           19 ILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        19 i~i~G~~~~GKStli~~l~~   38 (180)
                      |+|+||+|||||||+++|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            88999999999999999864

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.53  E-value=2.3e-05  Score=49.90  Aligned_cols=22  Identities=14%  Similarity=0.378  Sum_probs=18.4

Q ss_pred             cEEEEEcCCCCChHHHHHHhhc
Q 030289           17 MRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~   38 (180)
                      .=+++.|++||||||+.+.|..
T Consensus         7 ~iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           7 HIYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999998864

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.52  E-value=2.3e-05  Score=51.87  Aligned_cols=22  Identities=18%  Similarity=0.261  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHhhcC
Q 030289           18 RILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~   39 (180)
                      =|+|+||+|||||||+++|+..
T Consensus         4 livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           4 LYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            3789999999999999999753

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.51  E-value=2.9e-05  Score=50.77  Aligned_cols=25  Identities=32%  Similarity=0.244  Sum_probs=20.8

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      .+.--|+|+|+|||||||+...|..
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3445688999999999999998874

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.51  E-value=2.4e-05  Score=54.22  Aligned_cols=26  Identities=23%  Similarity=0.298  Sum_probs=21.6

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      .+.=.++|+|++|+|||||++.+.+-
T Consensus        60 ~~Ge~vaivG~nGsGKSTLl~~i~Gl   85 (281)
T d1r0wa_          60 EKGEMLAITGSTGSGKTSLLMLILGE   85 (281)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhCC
Confidence            34456899999999999999988753

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=97.49  E-value=1.6e-05  Score=53.63  Aligned_cols=23  Identities=30%  Similarity=0.403  Sum_probs=20.0

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcC
Q 030289           17 MRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      =-++++|++|||||||++.+.+-
T Consensus        26 ei~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          26 EILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             CEEECBCCTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Confidence            35789999999999999998863

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.49  E-value=4.1e-05  Score=51.34  Aligned_cols=33  Identities=30%  Similarity=0.345  Sum_probs=24.1

Q ss_pred             HHHhhhcccCc-cEEEEEcCCCCChHHHHHHhhc
Q 030289            6 SRLKMLFARKE-MRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus         6 ~~~~~~~~~~~-~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ..++.++...+ .++++.||+|+||||+++.+..
T Consensus        34 ~~l~~~i~~~~~~~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          34 KRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             HHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHH
Confidence            34444444333 3699999999999999988764

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=97.49  E-value=2.7e-05  Score=52.65  Aligned_cols=24  Identities=29%  Similarity=0.228  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCC
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      =-++++|++|||||||++.+.+-.
T Consensus        29 ei~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          29 EIFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            357899999999999999888654

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.47  E-value=2.9e-05  Score=52.46  Aligned_cols=25  Identities=28%  Similarity=0.332  Sum_probs=20.6

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      .=-++++|++|||||||++.+.+-.
T Consensus        31 Ge~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          31 GQIYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCCc
Confidence            3457899999999999998887643

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.46  E-value=3.1e-05  Score=52.32  Aligned_cols=25  Identities=28%  Similarity=0.293  Sum_probs=20.8

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      .=.++++|++|||||||++.+.+-.
T Consensus        29 Ge~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          29 GEFMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCChHHHHHHHHhcCC
Confidence            3457899999999999998887544

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.46  E-value=3.2e-05  Score=52.95  Aligned_cols=23  Identities=22%  Similarity=0.255  Sum_probs=19.8

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhc
Q 030289           16 EMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      +.-|++.||||+|||||+..+..
T Consensus        32 P~~ilL~GpPGtGKT~la~~la~   54 (273)
T d1gvnb_          32 PTAFLLGGQPGSGKTSLRSAIFE   54 (273)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            34588999999999999998864

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.45  E-value=1.8e-05  Score=53.15  Aligned_cols=23  Identities=26%  Similarity=0.247  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCC
Q 030289           18 RILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      -++++|++|||||||++.+.+-.
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            47899999999999999888644

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.44  E-value=2.7e-05  Score=53.16  Aligned_cols=25  Identities=24%  Similarity=0.458  Sum_probs=21.0

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      .+.=+++|+|++|||||||++.+.+
T Consensus        42 ~~Ge~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          42 EKGETVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             CTTCEEEEECSTTSSHHHHHTTTTT
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHh
Confidence            3455899999999999999987764

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.44  E-value=3.7e-05  Score=50.22  Aligned_cols=22  Identities=32%  Similarity=0.276  Sum_probs=19.1

Q ss_pred             cEEEEEcCCCCChHHHHHHhhc
Q 030289           17 MRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~   38 (180)
                      .-|+|+|+|||||||+..+|..
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4477999999999999998864

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.43  E-value=3.5e-05  Score=52.66  Aligned_cols=23  Identities=22%  Similarity=0.319  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHhhcCC
Q 030289           18 RILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      -++++|++|||||||++.+++-.
T Consensus        32 i~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          32 VTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Confidence            46899999999999999998643

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.43  E-value=3.7e-05  Score=51.84  Aligned_cols=24  Identities=25%  Similarity=0.290  Sum_probs=20.9

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhc
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ....+++.||||+||||+++.+..
T Consensus        34 ~~~~~Ll~GPpG~GKTtla~~la~   57 (239)
T d1ixsb2          34 PLEHLLLFGPPGLGKTTLAHVIAH   57 (239)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHH
Confidence            356799999999999999988874

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.43  E-value=7e-05  Score=52.95  Aligned_cols=27  Identities=19%  Similarity=0.154  Sum_probs=23.2

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      +.+.+|+|.|++|||||||++.|+..-
T Consensus       164 ~~~~nili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         164 AIGKNVIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             HHTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             HhCCCEEEEeeccccchHHHHHHhhhc
Confidence            446689999999999999999998644

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.42  E-value=3.7e-05  Score=49.16  Aligned_cols=20  Identities=40%  Similarity=0.514  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCChHHHHHHhh
Q 030289           18 RILMVGLDAAGKTTILYKLK   37 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~   37 (180)
                      .|+++|++||||||+.+.|.
T Consensus         4 ~Iil~G~~GsGKSTia~~LA   23 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELA   23 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHH
Confidence            47899999999999998885

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.41  E-value=5.8e-05  Score=50.38  Aligned_cols=34  Identities=29%  Similarity=0.441  Sum_probs=25.6

Q ss_pred             HHHHhhhcccCcc-EEEEEcCCCCChHHHHHHhhc
Q 030289            5 ISRLKMLFARKEM-RILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus         5 ~~~~~~~~~~~~~-~i~i~G~~~~GKStli~~l~~   38 (180)
                      ...++++.....+ ++++.||+|+||||+++.+..
T Consensus        24 ~~~L~~~~~~~~~~~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          24 IDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             HHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCeEEEECCCCCCchhhHHHHHH
Confidence            3455666555543 699999999999999987753

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.40  E-value=5.9e-05  Score=50.39  Aligned_cols=34  Identities=21%  Similarity=0.413  Sum_probs=25.8

Q ss_pred             HHHHhhhcccCcc-EEEEEcCCCCChHHHHHHhhc
Q 030289            5 ISRLKMLFARKEM-RILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus         5 ~~~~~~~~~~~~~-~i~i~G~~~~GKStli~~l~~   38 (180)
                      ...++++.....+ ++++.||+|+||||++..++.
T Consensus        23 ~~~L~~~i~~~~~~~lLl~Gp~G~GKttl~~~la~   57 (227)
T d1sxjc2          23 ITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAR   57 (227)
T ss_dssp             HHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCeEEEECCCCCChhHHHHHHHH
Confidence            3455566555444 699999999999999988864

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.40  E-value=8.1e-05  Score=51.09  Aligned_cols=26  Identities=35%  Similarity=0.429  Sum_probs=22.7

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhc
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      .+.+-+++++|++|+|||++++.|..
T Consensus        36 r~~k~n~lLVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          36 RRRKNNPLLVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             SSSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCccCCcEEECCCCCcHHHHHHHHHH
Confidence            46678999999999999999988864

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.39  E-value=6.3e-05  Score=51.14  Aligned_cols=24  Identities=25%  Similarity=0.349  Sum_probs=20.7

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhc
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ....|++.||+|+|||++++.+..
T Consensus        39 p~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHhh
Confidence            345699999999999999999874

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=2e-05  Score=51.27  Aligned_cols=23  Identities=35%  Similarity=0.507  Sum_probs=19.9

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhc
Q 030289           16 EMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      .+-|.++|++||||||+.+.|..
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45788999999999999998863

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.38  E-value=4.7e-05  Score=51.29  Aligned_cols=23  Identities=26%  Similarity=0.293  Sum_probs=20.1

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhc
Q 030289           16 EMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ...++|.||||+||||+++.+..
T Consensus        35 ~~~~L~~GPpGtGKT~lA~~la~   57 (238)
T d1in4a2          35 LDHVLLAGPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHh
Confidence            45799999999999999988864

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.37  E-value=4.5e-05  Score=52.16  Aligned_cols=25  Identities=28%  Similarity=0.365  Sum_probs=20.9

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      .=-++++|++|||||||++.+.+-.
T Consensus        28 GEi~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          28 GDVISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHcCc
Confidence            3457899999999999999887543

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.36  E-value=8.5e-05  Score=49.79  Aligned_cols=34  Identities=24%  Similarity=0.359  Sum_probs=25.9

Q ss_pred             HHHHhhhcccCc-cEEEEEcCCCCChHHHHHHhhc
Q 030289            5 ISRLKMLFARKE-MRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus         5 ~~~~~~~~~~~~-~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ...+++++.... .++++.||+|+||||+++.++.
T Consensus        21 ~~~l~~~i~~~~~~~lll~Gp~G~GKTtl~~~i~~   55 (237)
T d1sxjd2          21 VTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTK   55 (237)
T ss_dssp             HHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCeEEEECCCCCChHHHHHHHHH
Confidence            455666665444 3589999999999999988874

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.35  E-value=6.7e-05  Score=47.75  Aligned_cols=20  Identities=35%  Similarity=0.474  Sum_probs=17.4

Q ss_pred             EEEEcCCCCChHHHHHHhhc
Q 030289           19 ILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        19 i~i~G~~~~GKStli~~l~~   38 (180)
                      |++.|++||||||+.+.|..
T Consensus         6 I~l~G~~GsGKsTva~~L~~   25 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56779999999999998864

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.35  E-value=4.8e-05  Score=49.13  Aligned_cols=21  Identities=43%  Similarity=0.705  Sum_probs=17.5

Q ss_pred             cEEE-EEcCCCCChHHHHHHhh
Q 030289           17 MRIL-MVGLDAAGKTTILYKLK   37 (180)
Q Consensus        17 ~~i~-i~G~~~~GKStli~~l~   37 (180)
                      +||+ |.|.+||||||+++.|.
T Consensus         1 mkiivi~G~~GsGKTT~~~~La   22 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVK   22 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3565 57999999999998885

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=6.8e-05  Score=49.61  Aligned_cols=22  Identities=27%  Similarity=0.324  Sum_probs=19.7

Q ss_pred             ccEEEEEcCCCCChHHHHHHhh
Q 030289           16 EMRILMVGLDAAGKTTILYKLK   37 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~   37 (180)
                      ++-|+|.|++|||||||.+.|.
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~   23 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIV   23 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            5678999999999999998884

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.27  E-value=2.8e-05  Score=52.53  Aligned_cols=25  Identities=28%  Similarity=0.288  Sum_probs=21.0

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      .=.++++|++|||||||++.+.+-.
T Consensus        31 Ge~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          31 GERFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             TCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHcCc
Confidence            3468899999999999998887644

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.23  E-value=0.00015  Score=49.30  Aligned_cols=25  Identities=32%  Similarity=0.307  Sum_probs=21.1

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ...-.++|.|++|+|||++++.+..
T Consensus        41 ~~~~~lll~GppGtGKT~l~~~l~~   65 (276)
T d1fnna2          41 HHYPRATLLGRPGTGKTVTLRKLWE   65 (276)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHH
Confidence            3445799999999999999988864

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.18  E-value=0.0001  Score=47.98  Aligned_cols=26  Identities=27%  Similarity=0.388  Sum_probs=22.6

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhc
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ..+++-|+|-|..||||||+++.|..
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHH
Confidence            45677899999999999999998874

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.15  E-value=0.00017  Score=49.19  Aligned_cols=24  Identities=25%  Similarity=0.292  Sum_probs=20.1

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhc
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ..-.++|.|++|+|||||++++..
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHH
Confidence            344688999999999999998863

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.12  E-value=0.00017  Score=47.70  Aligned_cols=28  Identities=32%  Similarity=0.548  Sum_probs=22.9

Q ss_pred             hcccCccEEEEEcCCCCChHHHHHHhhc
Q 030289           11 LFARKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        11 ~~~~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ....+.+-|.|.|.+|||||||.+.|..
T Consensus        19 ~~~~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          19 LRNQRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             HhCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3345667788999999999999998863

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.12  E-value=0.00019  Score=48.51  Aligned_cols=32  Identities=31%  Similarity=0.285  Sum_probs=23.4

Q ss_pred             HHhhhcc--cCccEEEEEcCCCCChHHHHHHhhc
Q 030289            7 RLKMLFA--RKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus         7 ~~~~~~~--~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      .++++..  ....++++.||+|+||||++..+..
T Consensus        22 ~L~~~~~~~~~~~~lll~Gp~G~GKTt~~~~la~   55 (252)
T d1sxje2          22 FLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLE   55 (252)
T ss_dssp             HHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHH
T ss_pred             HHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence            4444443  2334699999999999999988764

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.12  E-value=0.00012  Score=49.54  Aligned_cols=24  Identities=21%  Similarity=0.117  Sum_probs=20.8

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      .-.+++.||+|+||||++..++..
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            347999999999999999988754

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.07  E-value=0.00017  Score=46.72  Aligned_cols=24  Identities=25%  Similarity=0.275  Sum_probs=20.9

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhc
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      +++-|+|.|.+||||||+++.|..
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            567889999999999999988854

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.06  E-value=0.00015  Score=48.04  Aligned_cols=21  Identities=29%  Similarity=0.281  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCChHHHHHHhhc
Q 030289           18 RILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~   38 (180)
                      =|+|.|||||||+|+...|..
T Consensus         5 iI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            367789999999999988863

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.04  E-value=0.00028  Score=47.81  Aligned_cols=23  Identities=26%  Similarity=0.335  Sum_probs=20.5

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhc
Q 030289           16 EMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      .-.+++.||+|+|||+|++.+..
T Consensus        42 ~~giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEecCCCCChhHHHHHHHH
Confidence            34699999999999999999984

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.02  E-value=0.00015  Score=50.86  Aligned_cols=24  Identities=38%  Similarity=0.504  Sum_probs=20.9

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhc
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ..-.+++.||||||||.|++++..
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHhh
Confidence            346789999999999999998874

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.98  E-value=0.00022  Score=49.92  Aligned_cols=26  Identities=31%  Similarity=0.216  Sum_probs=21.9

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhh
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLK   37 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~   37 (180)
                      ....++=|+|.|++||||||+.+.|.
T Consensus        76 ~~k~P~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          76 GQRIPYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             -CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCCCcHHHHHHH
Confidence            34667899999999999999988774

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.92  E-value=0.00019  Score=51.86  Aligned_cols=26  Identities=27%  Similarity=0.422  Sum_probs=22.1

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhh
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLK   37 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~   37 (180)
                      ..+.+-|++++|++|||||++++.|.
T Consensus        39 ~r~~k~n~llvG~~GvGKtaiv~~la   64 (387)
T d1qvra2          39 LRRTKNNPVLIGEPGVGKTAIVEGLA   64 (387)
T ss_dssp             HCSSCCCCEEEECTTSCHHHHHHHHH
T ss_pred             hcCCCCCCeEECCCCCCHHHHHHHHH
Confidence            35677789999999999999997665

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.91  E-value=0.0003  Score=47.98  Aligned_cols=23  Identities=30%  Similarity=0.359  Sum_probs=20.1

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhc
Q 030289           16 EMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      .-.+++.||||+|||++++.+..
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHH
Confidence            34599999999999999999874

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.88  E-value=0.00031  Score=47.89  Aligned_cols=24  Identities=29%  Similarity=0.285  Sum_probs=21.0

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      ...+++.||+|+|||++++++...
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceeEEecCCCCCchHHHHHHHHH
Confidence            456999999999999999998853

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.88  E-value=0.0026  Score=39.76  Aligned_cols=27  Identities=30%  Similarity=0.322  Sum_probs=22.4

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      ++..-|++-|+-|||||||++.++..-
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHhhc
Confidence            456678899999999999999887543

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.78  E-value=0.00017  Score=49.37  Aligned_cols=20  Identities=25%  Similarity=0.059  Sum_probs=16.7

Q ss_pred             EEEcCCCCChHHHHHHhhcC
Q 030289           20 LMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        20 ~i~G~~~~GKStli~~l~~~   39 (180)
                      .+.|+||+|||++++.+...
T Consensus        50 ~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          50 GSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             ECTTCCSSSHHHHHHHHHHH
T ss_pred             EeECCCCCCHHHHHHHHHHH
Confidence            34599999999999988743

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.76  E-value=0.00035  Score=51.39  Aligned_cols=23  Identities=39%  Similarity=0.524  Sum_probs=20.5

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhc
Q 030289           16 EMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      +-||+++||+|||||-|+++|..
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             cccEEEECCCCCCHHHHHHHHHH
Confidence            44999999999999999999963

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.75  E-value=0.00072  Score=46.67  Aligned_cols=26  Identities=15%  Similarity=0.192  Sum_probs=21.5

Q ss_pred             cccCccEEEEEcCCCCChHHHHHHhh
Q 030289           12 FARKEMRILMVGLDAAGKTTILYKLK   37 (180)
Q Consensus        12 ~~~~~~~i~i~G~~~~GKStli~~l~   37 (180)
                      -+..++=|+|.|++|||||||...+.
T Consensus        23 ~~~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          23 GNKCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCCEEEEeECCCCCCHHHHHHHHH
Confidence            34567889999999999999987664

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.74  E-value=0.00045  Score=45.17  Aligned_cols=20  Identities=45%  Similarity=0.642  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCChHHHHHHhh
Q 030289           18 RILMVGLDAAGKTTILYKLK   37 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~   37 (180)
                      -|+|-|..||||||+++.|.
T Consensus         2 lI~ieG~dGsGKST~~~~L~   21 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLS   21 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58999999999999998776

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.69  E-value=0.00071  Score=45.44  Aligned_cols=33  Identities=24%  Similarity=0.290  Sum_probs=23.9

Q ss_pred             HHHHhhhcccCcc--EEEEEcCCCCChHHHHHHhh
Q 030289            5 ISRLKMLFARKEM--RILMVGLDAAGKTTILYKLK   37 (180)
Q Consensus         5 ~~~~~~~~~~~~~--~i~i~G~~~~GKStli~~l~   37 (180)
                      ...++++....++  .+++.|++|+||||++..+.
T Consensus        21 ~~~L~~~i~~~~~~~~~Ll~Gp~G~GKtt~a~~~~   55 (239)
T d1njfa_          21 LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLA   55 (239)
T ss_dssp             HHHHHHHHHTTCCCSEEEEECSTTSSHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHH
Confidence            3455555554443  38899999999999998765

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.68  E-value=0.00034  Score=47.93  Aligned_cols=25  Identities=20%  Similarity=0.211  Sum_probs=21.3

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      ...|++.|++|+|||+|++++...-
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCcchhHHHHHHHHh
Confidence            4569999999999999999997543

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.52  E-value=0.00046  Score=47.92  Aligned_cols=18  Identities=28%  Similarity=0.564  Sum_probs=16.3

Q ss_pred             EEEEcCCCCChHHHHHHh
Q 030289           19 ILMVGLDAAGKTTILYKL   36 (180)
Q Consensus        19 i~i~G~~~~GKStli~~l   36 (180)
                      .+++|++|+||||++.++
T Consensus        27 nvlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          27 TAIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             EEEECCTTTCSTHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHH
Confidence            368999999999999887

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.51  E-value=0.0007  Score=44.45  Aligned_cols=20  Identities=40%  Similarity=0.494  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCChHHHHHHhh
Q 030289           18 RILMVGLDAAGKTTILYKLK   37 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~   37 (180)
                      =|+|-|..||||||+++.|.
T Consensus         4 fIviEG~dGsGKsT~~~~L~   23 (210)
T d4tmka_           4 YIVIEGLEGAGKTTARNVVV   23 (210)
T ss_dssp             EEEEEECTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            37888999999999998876

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.50  E-value=0.0012  Score=47.25  Aligned_cols=22  Identities=32%  Similarity=0.196  Sum_probs=19.4

Q ss_pred             cEEEEEcCCCCChHHHHHHhhc
Q 030289           17 MRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~   38 (180)
                      --+++.||||+|||++++.+.+
T Consensus       155 ~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         155 RYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999988863

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.00078  Score=44.01  Aligned_cols=25  Identities=28%  Similarity=0.173  Sum_probs=20.7

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcC
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      +.--+.|.|++|+|||+|+..|..+
T Consensus        22 ~G~v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          22 TGSITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHH
Confidence            3556789999999999999888643

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.45  E-value=0.00039  Score=49.13  Aligned_cols=21  Identities=29%  Similarity=0.381  Sum_probs=19.2

Q ss_pred             cEEEEEcCCCCChHHHHHHhh
Q 030289           17 MRILMVGLDAAGKTTILYKLK   37 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~   37 (180)
                      -++++.|++|+|||+|++++.
T Consensus        29 h~vLl~G~pG~GKT~lar~~~   49 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALA   49 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHH
T ss_pred             CeEEEECCCCccHHHHHHHHH
Confidence            479999999999999999885

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=96.45  E-value=0.0001  Score=47.98  Aligned_cols=18  Identities=28%  Similarity=0.399  Sum_probs=16.2

Q ss_pred             EEEcCCCCChHHHHHHhh
Q 030289           20 LMVGLDAAGKTTILYKLK   37 (180)
Q Consensus        20 ~i~G~~~~GKStli~~l~   37 (180)
                      +|+|++|||||||+.++.
T Consensus        28 vi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            578999999999999884

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.44  E-value=0.0005  Score=47.46  Aligned_cols=24  Identities=25%  Similarity=0.348  Sum_probs=17.5

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhh
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLK   37 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~   37 (180)
                      +++.=|+|.|.+||||||+.++|.
T Consensus         2 ~k~pIIgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           2 KKHPIISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             TTSCEEEEESCC---CCTHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHH
Confidence            456669999999999999998774

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.44  E-value=0.00089  Score=42.76  Aligned_cols=26  Identities=19%  Similarity=0.280  Sum_probs=21.3

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      ...=|+|.|++|+||||+.-.|....
T Consensus        13 ~g~gvl~~G~sG~GKStlal~l~~~g   38 (176)
T d1kkma_          13 YGLGVLITGDSGVGKSETALELVQRG   38 (176)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHcC
Confidence            34458999999999999998887544

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.00066  Score=45.33  Aligned_cols=22  Identities=41%  Similarity=0.412  Sum_probs=19.1

Q ss_pred             cEEEEEcCCCCChHHHHHHhhc
Q 030289           17 MRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~   38 (180)
                      -.|+|-|+.||||||+++.|..
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3588999999999999988764

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.42  E-value=0.00098  Score=43.77  Aligned_cols=22  Identities=18%  Similarity=0.208  Sum_probs=19.1

Q ss_pred             cEEEEEcCCCCChHHHHHHhhc
Q 030289           17 MRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~   38 (180)
                      |-|+|.|..||||||+.+.|..
T Consensus         4 ~iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHHH
Confidence            5688999999999999987753

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.40  E-value=0.00099  Score=42.56  Aligned_cols=26  Identities=19%  Similarity=0.247  Sum_probs=21.2

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      ...=|+|.|++|+||||+.-.|....
T Consensus        14 ~g~gvli~G~sG~GKS~lal~l~~~G   39 (177)
T d1knxa2          14 FGVGVLLTGRSGIGKSECALDLINKN   39 (177)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHTTT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHcC
Confidence            34458999999999999998887543

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.37  E-value=0.00099  Score=44.39  Aligned_cols=25  Identities=16%  Similarity=0.123  Sum_probs=20.7

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcC
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      +.--+.|.|++|+|||+|+..+...
T Consensus        33 ~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          33 TGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             SSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            3556789999999999999888654

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.32  E-value=0.0019  Score=44.31  Aligned_cols=23  Identities=17%  Similarity=0.265  Sum_probs=19.5

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhc
Q 030289           16 EMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ..-|+|.|+.|+|||||+..+..
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            44567999999999999988864

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=96.31  E-value=0.0012  Score=47.16  Aligned_cols=26  Identities=27%  Similarity=0.386  Sum_probs=22.4

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhc
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ....-+++++||+|||||-|.++|..
T Consensus        65 ~~p~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          65 ELSKSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             TCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             cCCCcceeeeCCCCccHHHHHHHHHh
Confidence            45677899999999999999998863

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.24  E-value=0.0014  Score=42.82  Aligned_cols=21  Identities=29%  Similarity=0.241  Sum_probs=18.7

Q ss_pred             cEEEEEcCCCCChHHHHHHhh
Q 030289           17 MRILMVGLDAAGKTTILYKLK   37 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~   37 (180)
                      +-|+|.|..||||||+.+.|.
T Consensus         3 ~iIgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            568899999999999998775

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.22  E-value=0.0011  Score=47.98  Aligned_cols=22  Identities=14%  Similarity=0.468  Sum_probs=18.0

Q ss_pred             CccEEEEEcCCCCChHHHHHHhh
Q 030289           15 KEMRILMVGLDAAGKTTILYKLK   37 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~   37 (180)
                      +.++ +|+|++|+|||+++.+++
T Consensus        25 ~~l~-~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          25 SNFT-SIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             CSEE-EEECSTTSSHHHHHHHHH
T ss_pred             CCEE-EEECCCCCCHHHHHHHHH
Confidence            4454 588999999999999974

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.17  E-value=0.0023  Score=41.91  Aligned_cols=32  Identities=19%  Similarity=0.421  Sum_probs=22.4

Q ss_pred             HHHhhhcccCc-c-EEEEEcCCCCChHHHHHHhh
Q 030289            6 SRLKMLFARKE-M-RILMVGLDAAGKTTILYKLK   37 (180)
Q Consensus         6 ~~~~~~~~~~~-~-~i~i~G~~~~GKStli~~l~   37 (180)
                      .++.+.....+ - -+++.|++|+||||++..+.
T Consensus        12 ~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a   45 (207)
T d1a5ta2          12 EKLVASYQAGRGHHALLIQALPGMGDDALIYALS   45 (207)
T ss_dssp             HHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHH
T ss_pred             HHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHH
Confidence            34434433333 3 38999999999999998665

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.13  E-value=0.0014  Score=43.85  Aligned_cols=24  Identities=21%  Similarity=0.162  Sum_probs=19.5

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      .--++|.|++|+|||+|.-.+...
T Consensus        36 G~~~li~G~pGsGKT~~~lq~~~~   59 (254)
T d1pzna2          36 QAITEVFGEFGSGKTQLAHTLAVM   59 (254)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHH
Confidence            345779999999999999888643

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=96.11  E-value=0.0016  Score=41.26  Aligned_cols=26  Identities=19%  Similarity=0.241  Sum_probs=21.3

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      ...=|+|.|++|+||||+.-.|....
T Consensus        14 ~g~gvli~G~sg~GKS~la~~l~~~g   39 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETALELIKRG   39 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHcC
Confidence            34568999999999999998887544

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=96.10  E-value=0.0011  Score=46.74  Aligned_cols=27  Identities=26%  Similarity=0.206  Sum_probs=23.5

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhhcC
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      .+...+|.|=|.-||||||+++.|...
T Consensus         2 ~m~~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           2 KMGVLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             CEEEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             CccceEEEEECCCCCCHHHHHHHHHHH
Confidence            466789999999999999999998753

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.09  E-value=0.0021  Score=42.21  Aligned_cols=21  Identities=43%  Similarity=0.512  Sum_probs=17.3

Q ss_pred             cEEEEEcCCCCChHHHHHHhh
Q 030289           17 MRILMVGLDAAGKTTILYKLK   37 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~   37 (180)
                      .=|+|-|+.||||||+++.|.
T Consensus         4 ~lI~ieG~dGsGKsT~~~~L~   24 (209)
T d1nn5a_           4 ALIVLEGVDRAGKSTQSRKLV   24 (209)
T ss_dssp             CEEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            347788999999999887764

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=96.01  E-value=0.002  Score=45.14  Aligned_cols=23  Identities=22%  Similarity=0.341  Sum_probs=18.1

Q ss_pred             ccEEE-EEcCCCCChHHHHHHhhc
Q 030289           16 EMRIL-MVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        16 ~~~i~-i~G~~~~GKStli~~l~~   38 (180)
                      .-.++ +.|+||+|||.|++.+..
T Consensus       122 ~~g~~l~~G~pG~GKT~la~ala~  145 (321)
T d1w44a_         122 ASGMVIVTGKGNSGKTPLVHALGE  145 (321)
T ss_dssp             ESEEEEEECSSSSCHHHHHHHHHH
T ss_pred             CCceEEEECCCCccHHHHHHHHHH
Confidence            33444 579999999999998864

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.95  E-value=0.016  Score=41.81  Aligned_cols=32  Identities=31%  Similarity=0.402  Sum_probs=26.4

Q ss_pred             HHhhhcccCccEEEEEcCCCCChHHHHHHhhc
Q 030289            7 RLKMLFARKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus         7 ~~~~~~~~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      .+++......=-|+|.|+.|+||||.++.+..
T Consensus       149 ~l~~l~~~~~GliLvtGpTGSGKSTTl~~~l~  180 (401)
T d1p9ra_         149 NFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQ  180 (401)
T ss_dssp             HHHHHHTSSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             HHHHHHhhhhceEEEEcCCCCCccHHHHHHhh
Confidence            44666666677799999999999999998875

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.94  E-value=0.002  Score=42.95  Aligned_cols=24  Identities=29%  Similarity=0.415  Sum_probs=20.3

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhc
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      +.--++|.|+||+|||+|+.++..
T Consensus        25 ~gsl~li~G~pGsGKT~l~~qia~   48 (242)
T d1tf7a2          25 KDSIILATGATGTGKTLLVSRFVE   48 (242)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHH
Confidence            466788999999999999988764

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.89  E-value=0.0027  Score=44.38  Aligned_cols=21  Identities=29%  Similarity=0.442  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChHHHHHHhhc
Q 030289           18 RILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~   38 (180)
                      .++++||+|+|||.|+..|..
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHHh
Confidence            688999999999999988863

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.0021  Score=42.84  Aligned_cols=21  Identities=33%  Similarity=0.362  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCChHHHHHHhhc
Q 030289           18 RILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~   38 (180)
                      -|+|=|.-||||||+++.|..
T Consensus         4 ~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            478999999999999998864

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.73  E-value=0.0027  Score=42.17  Aligned_cols=24  Identities=21%  Similarity=0.249  Sum_probs=19.9

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      .--++|.|++|+|||+|+..+..+
T Consensus        34 G~l~~i~G~~G~GKT~~~l~~a~~   57 (258)
T d2i1qa2          34 QSVTEFAGVFGSGKTQIMHQSCVN   57 (258)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHH
Confidence            456789999999999999888643

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=95.73  E-value=0.0019  Score=41.98  Aligned_cols=23  Identities=13%  Similarity=0.164  Sum_probs=19.5

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhc
Q 030289           16 EMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      +--+++.||+++|||.|++.|+.
T Consensus        53 kn~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          53 KNCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHH
Confidence            45578999999999999988863

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.72  E-value=0.003  Score=42.20  Aligned_cols=23  Identities=22%  Similarity=0.062  Sum_probs=19.7

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhc
Q 030289           16 EMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      .--++|.|++|+|||+|...++.
T Consensus        37 G~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          37 MAITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             SEEEEEECCTTCTHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            44578999999999999988874

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.65  E-value=0.0031  Score=41.48  Aligned_cols=21  Identities=48%  Similarity=0.479  Sum_probs=18.3

Q ss_pred             cEEEEEcCCCCChHHHHHHhh
Q 030289           17 MRILMVGLDAAGKTTILYKLK   37 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~   37 (180)
                      .=|+|=|.-||||||+++.|.
T Consensus         4 k~I~iEG~DGsGKST~~~~L~   24 (214)
T d1tmka_           4 KLILIEGLDRTGKTTQCNILY   24 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCcHHHHHHHHH
Confidence            348899999999999998775

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.51  E-value=0.0038  Score=41.16  Aligned_cols=24  Identities=21%  Similarity=0.221  Sum_probs=19.6

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhh
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLK   37 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~   37 (180)
                      .+.--++|.|++|+|||+|+..++
T Consensus        24 ~~G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          24 PIGRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHH
Confidence            346678899999999999987664

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.50  E-value=0.0037  Score=41.13  Aligned_cols=21  Identities=29%  Similarity=0.330  Sum_probs=18.8

Q ss_pred             EEEEcCCCCChHHHHHHhhcC
Q 030289           19 ILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        19 i~i~G~~~~GKStli~~l~~~   39 (180)
                      +.+.|++|+|||-|+++++..
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999988754

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=95.38  E-value=0.0048  Score=43.40  Aligned_cols=23  Identities=26%  Similarity=0.268  Sum_probs=20.8

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhc
Q 030289           16 EMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      -.+|.|=|.-|+||||+++.|..
T Consensus         6 ~~rI~iEG~iGsGKSTl~~~L~~   28 (333)
T d1p6xa_           6 IVRIYLDGVYGIGKSTTGRVMAS   28 (333)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHS
T ss_pred             eEEEEEECCccCCHHHHHHHHHH
Confidence            57899999999999999998874

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=95.28  E-value=0.005  Score=41.87  Aligned_cols=21  Identities=19%  Similarity=0.240  Sum_probs=17.3

Q ss_pred             cEEEEEcCCCCChHHHHHHhh
Q 030289           17 MRILMVGLDAAGKTTILYKLK   37 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~   37 (180)
                      =-++|.|++|+|||+|+..+.
T Consensus        36 ~l~vi~G~~G~GKT~~~~~la   56 (277)
T d1cr2a_          36 EVIMVTSGSGMGKSTFVRQQA   56 (277)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHH
Confidence            347899999999999986664

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.23  E-value=0.0065  Score=35.96  Aligned_cols=25  Identities=8%  Similarity=0.134  Sum_probs=22.2

Q ss_pred             ccCccEEEEEcCCCCChHHHHHHhh
Q 030289           13 ARKEMRILMVGLDAAGKTTILYKLK   37 (180)
Q Consensus        13 ~~~~~~i~i~G~~~~GKStli~~l~   37 (180)
                      ++..|.|.+-|.+|+|||||.+.|.
T Consensus         3 ~kqgf~i~~tg~~~~gk~~ia~al~   27 (122)
T d1g8fa3           3 PKQGFSIVLGNSLTVSREQLSIALL   27 (122)
T ss_dssp             GGCCEEEEECTTCCSCHHHHHHHHH
T ss_pred             CccceEEEEeCCCCCCHHHHHHHHH
Confidence            3567899999999999999999885

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.17  E-value=0.05  Score=36.85  Aligned_cols=76  Identities=13%  Similarity=0.056  Sum_probs=41.8

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCC
Q 030289           16 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSND   95 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~   95 (180)
                      .-=+.|.|++++|||+|+-.++..-..               .+..+.++|+.+.-.-......-+ +.|- ++++.++ 
T Consensus        60 g~i~e~~G~~~~GKT~l~l~~~~~~q~---------------~g~~~vyIDtE~~~~~e~a~~~Gv-D~d~-il~~~~~-  121 (269)
T d1mo6a1          60 GRVIEIYGPESSGKTTVALHAVANAQA---------------AGGVAAFIDAEHALDPDYAKKLGV-DTDS-LLVSQPD-  121 (269)
T ss_dssp             SSEEEEECSSSSSHHHHHHHHHHHHHH---------------TTCEEEEEESSCCCCHHHHHHHTC-CGGG-CEEECCS-
T ss_pred             ceeEEEecCCCcHHHHHHHHHHHHHhc---------------CCCEEEEEECCccCCHHHHHHhCC-CHHH-eEEecCC-
Confidence            344679999999999998777632211               233567789988543332222222 2332 2344443 


Q ss_pred             hhhHHHHHHHHHHHhc
Q 030289           96 RERIGEAKDELHRMLS  111 (180)
Q Consensus        96 ~~~~~~~~~~~~~~~~  111 (180)
                        +.+...+.+..+..
T Consensus       122 --~~E~~~~~~~~l~~  135 (269)
T d1mo6a1         122 --TGEQALEIADMLIR  135 (269)
T ss_dssp             --SHHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHHh
Confidence              34455555555543

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=95.14  E-value=0.0047  Score=43.34  Aligned_cols=23  Identities=30%  Similarity=0.322  Sum_probs=20.1

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhc
Q 030289           16 EMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      -.+|.|=|+-|+||||+++.|..
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHTC
T ss_pred             ceEEEEECCcCCCHHHHHHHHHH
Confidence            35799999999999999998863

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=95.11  E-value=0.0052  Score=44.59  Aligned_cols=22  Identities=27%  Similarity=0.496  Sum_probs=18.9

Q ss_pred             cEEEEEcCCCCChHHHHHHhhc
Q 030289           17 MRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~   38 (180)
                      -+++|+|.+|+|||+++..+..
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHH
Confidence            4689999999999999877763

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=95.11  E-value=0.046  Score=37.04  Aligned_cols=75  Identities=15%  Similarity=0.050  Sum_probs=42.1

Q ss_pred             cEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCCh
Q 030289           17 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDR   96 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~   96 (180)
                      -=+.|.|++++|||+|+..++..-..               .+..+.++|+-+.-........- -+.|-+ +++.+.  
T Consensus        58 ~itei~G~~~sGKT~l~l~~~~~aqk---------------~g~~v~yiDtE~~~~~~~a~~~G-vd~d~i-~~~~~~--  118 (268)
T d1xp8a1          58 RITEIYGPESGGKTTLALAIVAQAQK---------------AGGTCAFIDAEHALDPVYARALG-VNTDEL-LVSQPD--  118 (268)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHH---------------TTCCEEEEESSCCCCHHHHHHTT-CCGGGC-EEECCS--
T ss_pred             eEEEEecCCccchHHHHHHHHHHHHh---------------CCCEEEEEECCccCCHHHHHHhC-CCchhE-EEEcCC--
Confidence            34679999999999999877643211               12345688988744333222221 123333 344443  


Q ss_pred             hhHHHHHHHHHHHhc
Q 030289           97 ERIGEAKDELHRMLS  111 (180)
Q Consensus        97 ~~~~~~~~~~~~~~~  111 (180)
                       +.+...+.+..+..
T Consensus       119 -~~E~~~~~~~~l~~  132 (268)
T d1xp8a1         119 -NGEQALEIMELLVR  132 (268)
T ss_dssp             -SHHHHHHHHHHHHT
T ss_pred             -CHHHHHHHHHHHHh
Confidence             44555556666554

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.10  E-value=0.0061  Score=40.55  Aligned_cols=21  Identities=24%  Similarity=0.298  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCChHHHHHHhhc
Q 030289           18 RILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~~   38 (180)
                      -|+|.|..||||||..+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            378999999999999998853

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=94.90  E-value=0.013  Score=39.73  Aligned_cols=31  Identities=35%  Similarity=0.434  Sum_probs=23.1

Q ss_pred             HHHhhhcccCccEEEEE-cCCCCChHHHHHHh
Q 030289            6 SRLKMLFARKEMRILMV-GLDAAGKTTILYKL   36 (180)
Q Consensus         6 ~~~~~~~~~~~~~i~i~-G~~~~GKStli~~l   36 (180)
                      +.+...+.++..+|+++ |-.||||||+.-.|
T Consensus         9 ~~~~~~~~~~~~~iii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2           9 SALVDDIARNEHGLIMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             HHHHHHHHTTSCEEEEEECSTTSSHHHHHHHH
T ss_pred             HHHHHHhhcCCCEEEEEECCCCCCHHHHHHHH
Confidence            34455566788888866 99999999986555

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=94.90  E-value=0.0072  Score=40.91  Aligned_cols=20  Identities=25%  Similarity=0.285  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCChHHHHHHhh
Q 030289           18 RILMVGLDAAGKTTILYKLK   37 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~   37 (180)
                      -.+|.|++|+|||+|+-.+.
T Consensus        31 ~~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          31 VGALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            46799999999999987664

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=94.89  E-value=0.0096  Score=41.19  Aligned_cols=18  Identities=33%  Similarity=0.495  Sum_probs=14.6

Q ss_pred             ccEEEEEcCCCCChHHHH
Q 030289           16 EMRILMVGLDAAGKTTIL   33 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli   33 (180)
                      .-.++|.|++||||||.+
T Consensus        24 ~g~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          24 EGPLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             SSCEEEEECTTSCHHHHH
T ss_pred             CCCEEEEecCCccHHHHH
Confidence            335889999999999754

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=94.89  E-value=0.0049  Score=42.38  Aligned_cols=16  Identities=25%  Similarity=0.434  Sum_probs=13.6

Q ss_pred             EEEEEcCCCCChHHHH
Q 030289           18 RILMVGLDAAGKTTIL   33 (180)
Q Consensus        18 ~i~i~G~~~~GKStli   33 (180)
                      .++|+|++|+||||.+
T Consensus        16 ~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEEECCCTTSCHHHHH
T ss_pred             CEEEEeeCCccHHHHH
Confidence            4789999999999753

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.73  E-value=0.0093  Score=41.60  Aligned_cols=20  Identities=30%  Similarity=0.476  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCChHHHHHHhh
Q 030289           18 RILMVGLDAAGKTTILYKLK   37 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l~   37 (180)
                      .++++||+|+|||.+.+.|.
T Consensus        55 ~~lf~Gp~G~GKt~lak~la   74 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLA   74 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHH
Confidence            56788999999999998775

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=94.73  E-value=0.0093  Score=40.94  Aligned_cols=27  Identities=30%  Similarity=0.317  Sum_probs=22.2

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcCC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLGE   40 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~~   40 (180)
                      -+.=|++|+|++|+|||+|+..+..+.
T Consensus        41 grGQr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          41 GRGQRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             BTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             cCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence            345689999999999999998887543

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=94.41  E-value=0.014  Score=39.68  Aligned_cols=24  Identities=29%  Similarity=0.357  Sum_probs=19.9

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhc
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      ++--+.+.|++++|||+|++.+..
T Consensus       103 k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         103 KRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccEEEEEEcCCCCCHHHHHHHHHH
Confidence            355677889999999999988864

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=94.30  E-value=0.012  Score=41.71  Aligned_cols=20  Identities=35%  Similarity=0.351  Sum_probs=16.1

Q ss_pred             cEEEEEcCCCCChHHHHHHh
Q 030289           17 MRILMVGLDAAGKTTILYKL   36 (180)
Q Consensus        17 ~~i~i~G~~~~GKStli~~l   36 (180)
                      --.+|.|++|+|||+++.++
T Consensus       164 ~~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         164 RISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             SEEEEECCTTSTHHHHHHHH
T ss_pred             CeEEEEcCCCCCceehHHHH
Confidence            35778999999999987543

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.19  E-value=0.016  Score=38.82  Aligned_cols=33  Identities=18%  Similarity=0.335  Sum_probs=24.0

Q ss_pred             HHHHhhhcccCccEEEEEcCCCCChHHHHHHhhc
Q 030289            5 ISRLKMLFARKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus         5 ~~~~~~~~~~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      +.+++... .....|+|.|++|+||+.+.+.+..
T Consensus        13 ~~~~~~~a-~~~~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          13 LEKIKKIS-CAECPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             HHHHHHHT-TCCSCEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHh-CCCCCEEEECCCCcCHHHHHHHHHH
Confidence            33444433 4456799999999999999987753

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=93.52  E-value=0.022  Score=38.52  Aligned_cols=23  Identities=22%  Similarity=0.325  Sum_probs=18.7

Q ss_pred             ccEEEEEcCCCCChHHHHHHhhc
Q 030289           16 EMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      .-=+.|.|++|+|||+|+-.++.
T Consensus        54 g~itei~G~~gsGKTtl~l~~~~   76 (263)
T d1u94a1          54 GRIVEIYGPESSGKTTLTLQVIA   76 (263)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEecCCCcHHHHHHHHHHH
Confidence            44567999999999999877753

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=93.16  E-value=0.028  Score=37.86  Aligned_cols=86  Identities=10%  Similarity=0.098  Sum_probs=46.6

Q ss_pred             CeEEEEEEcCCCCCC-hhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCe-EEEEEecCCCCCCCC-H
Q 030289           59 NVSFTVWDVGGQDKI-RPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV-LLVFANKQDLPNAMS-V  135 (180)
Q Consensus        59 ~~~~~i~D~~G~~~~-~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iiiv~nK~D~~~~~~-~  135 (180)
                      .+.+.++|+|+.... .........-+|.++++... +..++.........+.......+.. .-++.|+.+.....+ .
T Consensus       115 ~~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~~~~~~  193 (269)
T d1cp2a_         115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVANEYELL  193 (269)
T ss_dssp             TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCCHHHH
T ss_pred             cCCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhccccceeccceEEeeecCCCccchh
Confidence            357999999975433 22333334557888888766 4555554444433332221122333 347889988765432 3


Q ss_pred             hHHHhHhCCC
Q 030289          136 SEVTDKLGLH  145 (180)
Q Consensus       136 ~~~~~~~~~~  145 (180)
                      +++.+.++..
T Consensus       194 ~~~~~~~~~~  203 (269)
T d1cp2a_         194 DAFAKELGSQ  203 (269)
T ss_dssp             HHHHHHHTCC
T ss_pred             hhhHhhcCCe
Confidence            3344455543

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=93.06  E-value=0.02  Score=39.61  Aligned_cols=15  Identities=40%  Similarity=0.676  Sum_probs=13.5

Q ss_pred             EEEEcCCCCChHHHH
Q 030289           19 ILMVGLDAAGKTTIL   33 (180)
Q Consensus        19 i~i~G~~~~GKStli   33 (180)
                      -+|+|.+|+|||||-
T Consensus        17 alfFGLSGTGKTTLs   31 (313)
T d2olra1          17 AVFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEEECSTTSSHHHHH
T ss_pred             EEEEccCCCCcccce
Confidence            479999999999976

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.88  E-value=0.037  Score=35.17  Aligned_cols=31  Identities=29%  Similarity=0.179  Sum_probs=23.3

Q ss_pred             EEEEcCCCCChHHHHHHhhcCC-ccccccccc
Q 030289           19 ILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG   49 (180)
Q Consensus        19 i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~   49 (180)
                      ++|+|...+|||.+..++.... ...|.+|..
T Consensus         2 iLVtGGarSGKS~~AE~l~~~~~~~~YiAT~~   33 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGDAPQVLYIATSQ   33 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCSCSSEEEEECCC
T ss_pred             EEEECCCCccHHHHHHHHHhcCCCcEEEEccC
Confidence            6899999999999999987544 444455543

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.85  E-value=0.41  Score=30.87  Aligned_cols=68  Identities=7%  Similarity=-0.014  Sum_probs=45.6

Q ss_pred             CeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEE-EEEecCCCCCCC
Q 030289           59 NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLL-VFANKQDLPNAM  133 (180)
Q Consensus        59 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii-iv~nK~D~~~~~  133 (180)
                      .+.+.++|+|+...  ......+..+|.++++...+ ..++....+....+.    ..+.|+. +|.|+.+..+..
T Consensus       111 ~~d~IiiD~~~~~~--~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~----~~~~~~~giv~N~~~~~~~~  179 (237)
T d1g3qa_         111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLK----KAGLAILGFVLNRYGRSDRD  179 (237)
T ss_dssp             GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHH----HTTCEEEEEEEEEETSCTTC
T ss_pred             cCCEEEEccccccc--ccchhhhhhhhccccccccc-ceecchhhHHHHHHh----hhhhhhhhhhhcccccccch
Confidence            46899999998653  33445567799999999864 455555555544432    2456655 889999876543

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=92.84  E-value=0.022  Score=39.55  Aligned_cols=15  Identities=40%  Similarity=0.676  Sum_probs=13.6

Q ss_pred             EEEEcCCCCChHHHH
Q 030289           19 ILMVGLDAAGKTTIL   33 (180)
Q Consensus        19 i~i~G~~~~GKStli   33 (180)
                      -+|+|.+|+|||||-
T Consensus        17 alffGLSGTGKTTLs   31 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEEECTTSCHHHHT
T ss_pred             EEEEccCCCCccccc
Confidence            579999999999976

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.76  E-value=0.036  Score=37.69  Aligned_cols=25  Identities=28%  Similarity=0.332  Sum_probs=20.7

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcC
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      +.=|++++|++|+|||+|+..+..+
T Consensus        67 kGQr~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          67 KGGKIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCEEEeeCCCCCCHHHHHHHHHHH
Confidence            4458999999999999998777643

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=92.54  E-value=0.025  Score=39.23  Aligned_cols=16  Identities=38%  Similarity=0.596  Sum_probs=14.2

Q ss_pred             EEEEEcCCCCChHHHH
Q 030289           18 RILMVGLDAAGKTTIL   33 (180)
Q Consensus        18 ~i~i~G~~~~GKStli   33 (180)
                      .-+|+|.+|+|||||-
T Consensus        16 ~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          16 VTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEEEECCTTSSHHHHH
T ss_pred             EEEEEccCCCCcccce
Confidence            3579999999999987

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.66  E-value=0.055  Score=35.84  Aligned_cols=19  Identities=21%  Similarity=0.497  Sum_probs=17.0

Q ss_pred             EEEEcCCCCChHHHHHHhh
Q 030289           19 ILMVGLDAAGKTTILYKLK   37 (180)
Q Consensus        19 i~i~G~~~~GKStli~~l~   37 (180)
                      .+|.|++.+||||+++.+.
T Consensus        44 ~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHH
Confidence            6799999999999998774

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=91.39  E-value=0.062  Score=36.53  Aligned_cols=85  Identities=13%  Similarity=0.158  Sum_probs=43.4

Q ss_pred             CeEEEEEEcCCCCCChhh-HHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeE-EEEEecCCCCCCCC-H
Q 030289           59 NVSFTVWDVGGQDKIRPL-WRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVL-LVFANKQDLPNAMS-V  135 (180)
Q Consensus        59 ~~~~~i~D~~G~~~~~~~-~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i-iiv~nK~D~~~~~~-~  135 (180)
                      .+.+.++|+|+....... .......++.++++... +..++......+..+.......+.++ -+|.|+.+...... .
T Consensus       118 ~~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~~-~~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~~~~~~~  196 (289)
T d2afhe1         118 DLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSG-EMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDREDELI  196 (289)
T ss_dssp             TCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECS-SHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTTHHHHH
T ss_pred             cCCeEeeccCCccCHHHHHHHHHhhccceeecccch-hHHHHHHHHHHHHHHHhhhhcccccccceeehhhcchhhHHHH
Confidence            467899999875533222 22222356766666554 34455555444443332222234444 47889877543221 3


Q ss_pred             hHHHhHhCC
Q 030289          136 SEVTDKLGL  144 (180)
Q Consensus       136 ~~~~~~~~~  144 (180)
                      +++.+.++.
T Consensus       197 ~~~~~~~g~  205 (289)
T d2afhe1         197 IALANKLGT  205 (289)
T ss_dssp             HHHHHHHTS
T ss_pred             HHHHHHcCC
Confidence            344444443

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=91.30  E-value=0.062  Score=35.32  Aligned_cols=19  Identities=37%  Similarity=0.607  Sum_probs=17.1

Q ss_pred             EEEEcCCCCChHHHHHHhh
Q 030289           19 ILMVGLDAAGKTTILYKLK   37 (180)
Q Consensus        19 i~i~G~~~~GKStli~~l~   37 (180)
                      ++|.||+.+||||+++.+.
T Consensus        38 ~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhH
Confidence            6899999999999998774

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.00  E-value=0.062  Score=34.56  Aligned_cols=25  Identities=20%  Similarity=0.230  Sum_probs=21.5

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhc
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKL   38 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~   38 (180)
                      .....+++.|++|+|||+++..+..
T Consensus        13 ~~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          13 SEGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             CSSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999987764

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=90.96  E-value=0.065  Score=31.91  Aligned_cols=24  Identities=13%  Similarity=-0.007  Sum_probs=17.4

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhh
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLK   37 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~   37 (180)
                      +..=..++.++.|+|||+++-.+.
T Consensus         6 ~~~~~~ll~apTGsGKT~~~~~~~   29 (136)
T d1a1va1           6 QSFQVAHLHAPTGSGKSTKVPAAY   29 (136)
T ss_dssp             SSCEEEEEECCTTSCTTTHHHHHH
T ss_pred             cCCCEEEEEeCCCCCHHHHHHHHH
Confidence            333345689999999999885554

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.18  E-value=0.068  Score=36.48  Aligned_cols=26  Identities=27%  Similarity=0.391  Sum_probs=21.1

Q ss_pred             cCccEEEEEcCCCCChHHHHHHhhcC
Q 030289           14 RKEMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      .+.=|++++|++|+|||+|+..+..+
T Consensus        66 g~GQr~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          66 GRGQRELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             BTTCBCEEEESTTSSHHHHHHHHHHH
T ss_pred             cCCCEEEeecCCCCChHHHHHHHHHh
Confidence            44568999999999999998766544

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=89.47  E-value=0.18  Score=34.02  Aligned_cols=19  Identities=26%  Similarity=0.410  Sum_probs=15.2

Q ss_pred             EEEEEcCCCCChHHHHHHh
Q 030289           18 RILMVGLDAAGKTTILYKL   36 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l   36 (180)
                      -|.+.|-.|+||||+.-.+
T Consensus        10 ~i~~sGKGGVGKTTvaa~l   28 (296)
T d1ihua1          10 YLFFTGKGGVGKTSISCAT   28 (296)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCcChHHHHHHHH
Confidence            4568899999999976555

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=89.27  E-value=0.13  Score=32.93  Aligned_cols=20  Identities=35%  Similarity=0.469  Sum_probs=16.4

Q ss_pred             EEEEEcCC-CCChHHHHHHhh
Q 030289           18 RILMVGLD-AAGKTTILYKLK   37 (180)
Q Consensus        18 ~i~i~G~~-~~GKStli~~l~   37 (180)
                      |+.|.|-. ||||||+.-.|.
T Consensus         3 ~~~i~gt~~GVGKTtvs~~La   23 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCALL   23 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHHH
Confidence            67899985 999999986663

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=88.85  E-value=0.074  Score=31.39  Aligned_cols=19  Identities=32%  Similarity=0.267  Sum_probs=15.5

Q ss_pred             cCccEEEEEcCCCCChHHH
Q 030289           14 RKEMRILMVGLDAAGKTTI   32 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStl   32 (180)
                      ++.-++++.+++|+|||..
T Consensus         5 ~~~~~~il~~~tGsGKT~~   23 (140)
T d1yksa1           5 KKGMTTVLDFHPGAGKTRR   23 (140)
T ss_dssp             STTCEEEECCCTTSSTTTT
T ss_pred             HcCCcEEEEcCCCCChhHH
Confidence            5567888889999999943

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=88.69  E-value=0.085  Score=35.82  Aligned_cols=25  Identities=28%  Similarity=0.396  Sum_probs=19.8

Q ss_pred             CccEEEEEcCCCCChHHHHHHhhcC
Q 030289           15 KEMRILMVGLDAAGKTTILYKLKLG   39 (180)
Q Consensus        15 ~~~~i~i~G~~~~GKStli~~l~~~   39 (180)
                      +.=|+.|+|++|+|||+|+..+..+
T Consensus        66 ~GQr~~Ifg~~g~GKt~l~~~~~~~   90 (276)
T d1fx0a3          66 RGQRELIIGDRQTGKTAVATDTILN   90 (276)
T ss_dssp             TTCBCBEEESSSSSHHHHHHHHHHT
T ss_pred             CCceEeeccCCCCChHHHHHHHHhh
Confidence            4557899999999999998665433

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=87.99  E-value=1.1  Score=26.92  Aligned_cols=23  Identities=17%  Similarity=0.356  Sum_probs=17.6

Q ss_pred             EEEEEc-CCCCChHHHHHHhhcCCc
Q 030289           18 RILMVG-LDAAGKTTILYKLKLGEI   41 (180)
Q Consensus        18 ~i~i~G-~~~~GKStli~~l~~~~~   41 (180)
                      ||+|+| ...+| +++...+..+..
T Consensus         2 Kv~IiGA~G~VG-~~~A~~l~~~~~   25 (144)
T d1mlda1           2 KVAVLGASGGIG-QPLSLLLKNSPL   25 (144)
T ss_dssp             EEEEETTTSTTH-HHHHHHHHTCTT
T ss_pred             eEEEECCCChHH-HHHHHHHHhCCc
Confidence            899999 58999 666767775553

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=86.89  E-value=0.21  Score=30.02  Aligned_cols=17  Identities=35%  Similarity=0.575  Sum_probs=13.9

Q ss_pred             EEEcCCCCChHH-HHHHh
Q 030289           20 LMVGLDAAGKTT-ILYKL   36 (180)
Q Consensus        20 ~i~G~~~~GKSt-li~~l   36 (180)
                      +++||=.||||| |++++
T Consensus         6 ~i~GpMfsGKTteLi~~~   23 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRL   23 (139)
T ss_dssp             EEECSTTSCHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHH
Confidence            578999999999 66555

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=86.04  E-value=0.24  Score=31.24  Aligned_cols=16  Identities=38%  Similarity=0.324  Sum_probs=13.5

Q ss_pred             EEEEEcCCCCChHHHH
Q 030289           18 RILMVGLDAAGKTTIL   33 (180)
Q Consensus        18 ~i~i~G~~~~GKStli   33 (180)
                      ++++.+|.|+|||.+.
T Consensus        25 n~lv~~pTGsGKT~i~   40 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLIA   40 (200)
T ss_dssp             CEEEECCTTSCHHHHH
T ss_pred             CeEEEeCCCCcHHHHH
Confidence            5889999999999743

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.62  E-value=0.32  Score=31.37  Aligned_cols=66  Identities=14%  Similarity=0.028  Sum_probs=39.6

Q ss_pred             CeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCC
Q 030289           59 NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP  130 (180)
Q Consensus        59 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~  130 (180)
                      .+.+.++|+|+...  ......+..+|.++++...+ ..++.............   ....+-+|+|+.+-.
T Consensus       109 ~~D~viiD~~~~~~--~~~~~~l~~ad~v~~v~~~~-~~~~~~~~~~~~~~~~~---~~~~~~iv~N~~~~~  174 (232)
T d1hyqa_         109 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERL---GTKVLGVVVNRITTL  174 (232)
T ss_dssp             TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHH---TCEEEEEEEEEECTT
T ss_pred             ccceeeeccccccc--chhHHHhhhhheeeeecccc-ccchhhhhhhhhhhhhc---ccccccccccccccc
Confidence            35689999998653  34445666799999998864 44444443333222111   122345789998754

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=83.18  E-value=0.39  Score=30.98  Aligned_cols=19  Identities=42%  Similarity=0.576  Sum_probs=15.0

Q ss_pred             EEEE-cCCCCChHHHHHHhh
Q 030289           19 ILMV-GLDAAGKTTILYKLK   37 (180)
Q Consensus        19 i~i~-G~~~~GKStli~~l~   37 (180)
                      |+|. +..|+||||+.-.|.
T Consensus         5 Iav~~~kGGvGKTtia~nLA   24 (237)
T d1g3qa_           5 ISIVSGKGGTGKTTVTANLS   24 (237)
T ss_dssp             EEEECSSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCcHHHHHHHHH
Confidence            6677 578999999986663

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=82.66  E-value=0.37  Score=32.35  Aligned_cols=25  Identities=28%  Similarity=0.364  Sum_probs=19.4

Q ss_pred             hcccCccEEEEEcCCCCChHHHHHH
Q 030289           11 LFARKEMRILMVGLDAAGKTTILYK   35 (180)
Q Consensus        11 ~~~~~~~~i~i~G~~~~GKStli~~   35 (180)
                      ....+..+-++-|+.|||||-..-.
T Consensus        99 ~~~~~~m~rLL~GdvGSGKT~Va~~  123 (264)
T d1gm5a3          99 MISEKPMNRLLQGDVGSGKTVVAQL  123 (264)
T ss_dssp             HHSSSCCCCEEECCSSSSHHHHHHH
T ss_pred             hhccCcceeeeeccccccccHHHHH
Confidence            3345677889999999999987533

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.23  E-value=0.14  Score=32.72  Aligned_cols=18  Identities=33%  Similarity=0.361  Sum_probs=15.0

Q ss_pred             ccEEEEEcCCCCChHHHH
Q 030289           16 EMRILMVGLDAAGKTTIL   33 (180)
Q Consensus        16 ~~~i~i~G~~~~GKStli   33 (180)
                      .-++++.+|+|+|||+..
T Consensus        40 ~~~~il~apTGsGKT~~a   57 (202)
T d2p6ra3          40 GKNLLLAMPTAAGKTLLA   57 (202)
T ss_dssp             CSCEEEECSSHHHHHHHH
T ss_pred             CCCEEEEcCCCCchhHHH
Confidence            347899999999999753

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=82.20  E-value=4.4  Score=26.44  Aligned_cols=19  Identities=26%  Similarity=0.424  Sum_probs=16.4

Q ss_pred             EEEEEcCCCCChHHHHHHh
Q 030289           18 RILMVGLDAAGKTTILYKL   36 (180)
Q Consensus        18 ~i~i~G~~~~GKStli~~l   36 (180)
                      +|+|.|-.|+||||+.-.|
T Consensus         3 ~Iai~gKGGvGKTT~a~nL   21 (269)
T d1cp2a_           3 QVAIYGKGGIGKSTTTQNL   21 (269)
T ss_dssp             EEEEEECTTSSHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHH
Confidence            5789999999999998555

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=81.25  E-value=0.69  Score=30.32  Aligned_cols=23  Identities=26%  Similarity=0.255  Sum_probs=18.2

Q ss_pred             cCccEEEEEcCCCCChHHHHHHh
Q 030289           14 RKEMRILMVGLDAAGKTTILYKL   36 (180)
Q Consensus        14 ~~~~~i~i~G~~~~GKStli~~l   36 (180)
                      ......++.|+.|+|||-..-+.
T Consensus        74 ~~~~~~LL~GdvGsGKT~V~~~a   96 (233)
T d2eyqa3          74 PLAMDRLVCGDVGFGKTEVAMRA   96 (233)
T ss_dssp             SSCCEEEEECCCCTTTHHHHHHH
T ss_pred             cCccCeEEEcCCCCCcHHHHHHH
Confidence            45568899999999999876433