Citrus Sinensis ID: 030291
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 180 | 2.2.26 [Sep-21-2011] | |||||||
| O22308 | 352 | Isoflavone-7-O-methyltran | N/A | no | 0.994 | 0.508 | 0.522 | 6e-53 | |
| O22309 | 352 | Isoflavone-7-O-methyltran | N/A | no | 0.994 | 0.508 | 0.516 | 2e-52 | |
| O24529 | 352 | Isoflavone-7-O-methyltran | N/A | no | 0.994 | 0.508 | 0.516 | 2e-52 | |
| B6VJS4 | 357 | Trans-resveratrol di-O-me | no | no | 1.0 | 0.504 | 0.5 | 4e-51 | |
| Q84KK5 | 357 | Isoflavone 7-O-methyltran | N/A | no | 0.994 | 0.501 | 0.5 | 4e-51 | |
| C6TAY1 | 358 | Flavonoid 4'-O-methyltran | no | no | 1.0 | 0.502 | 0.5 | 5e-51 | |
| O24305 | 360 | 6a-hydroxymaackiain methy | N/A | no | 0.983 | 0.491 | 0.519 | 8e-49 | |
| Q6VMW0 | 366 | 8-hydroxyquercetin 8-O-me | N/A | no | 0.988 | 0.486 | 0.519 | 3e-47 | |
| Q84KK4 | 365 | Isoflavone 4'-O-methyltra | N/A | no | 1.0 | 0.493 | 0.522 | 5e-46 | |
| Q9LEL6 | 347 | (RS)-norcoclaurine 6-O-me | N/A | no | 0.972 | 0.504 | 0.466 | 6e-45 |
| >sp|O22308|7OMT6_MEDSA Isoflavone-7-O-methyltransferase 6 OS=Medicago sativa PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 206 bits (524), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 94/180 (52%), Positives = 130/180 (72%), Gaps = 1/180 (0%)
Query: 1 MATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNL 60
+ L ++DC +F GL S+VDVGGGTG A+II E FP +KC V D P V ++ ++NL
Sbjct: 174 LINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNL 233
Query: 61 KYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDE 120
Y+ GDMF IP +DA K + H + D+DCL++LKKC+EA+ ++G+RGKV IID+VIDE
Sbjct: 234 TYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDE 293
Query: 121 KEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFGIKSLIEVYP 180
K+D+ ++T+ KLL D+ M + GKER E+EW LF+ AGF HYKI+P+ G SLIE+YP
Sbjct: 294 KKDENQVTQIKLLMDVNMAC-LNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352
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Transfers a methyl group to 7-hydroxyls of the isoflavones daidzein, genistein and 6,7,4'-trihydroxyisoflavone. Can also methylate (+)6a-hydroxymaackiain with lower efficiency. Medicago sativa (taxid: 3879) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 5EC: 0 |
| >sp|O22309|7OMT9_MEDSA Isoflavone-7-O-methyltransferase 9 OS=Medicago sativa PE=2 SV=1 | Back alignment and function description |
|---|
Score = 204 bits (520), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 93/180 (51%), Positives = 130/180 (72%), Gaps = 1/180 (0%)
Query: 1 MATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNL 60
+ L ++DC +F GL S+VDVGGGTG A+II E FP +KC V D P V ++ ++NL
Sbjct: 174 LINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNL 233
Query: 61 KYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDE 120
Y+ GDMF IP +DA K + H + D+DCL++LKKC+EA+ ++G+RGKV IID+VI+E
Sbjct: 234 TYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVINE 293
Query: 121 KEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFGIKSLIEVYP 180
K+D+ ++T+ KLL D+ M + GKER E+EW LF+ AGF HYKI+P+ G SLIE+YP
Sbjct: 294 KKDENQVTQIKLLMDVNMAC-LNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352
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Transfers a methyl group to 7-hydroxyls of the isoflavones daidzein, genistein and 6,7,4'-trihydroxyisoflavone. Can also methylate (+)6a-hydroxymaackiain with lower efficiency. Medicago sativa (taxid: 3879) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 EC: 0 |
| >sp|O24529|7OMT8_MEDSA Isoflavone-7-O-methyltransferase 8 OS=Medicago sativa PE=1 SV=1 | Back alignment and function description |
|---|
Score = 204 bits (520), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 93/180 (51%), Positives = 130/180 (72%), Gaps = 1/180 (0%)
Query: 1 MATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNL 60
+ L ++DC +F GL S+VDVGGGTG A+II E FP +KC V D P V ++ ++NL
Sbjct: 174 LINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNL 233
Query: 61 KYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDE 120
Y+ GDMF IP +DA K + H + D+DCL++LKKC+EA+ ++G+RGKV IID+VID+
Sbjct: 234 TYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDK 293
Query: 121 KEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFGIKSLIEVYP 180
K+D+ ++T+ KLL D+ M + GKER E+EW LF+ AGF HYKI+P+ G SLIE+YP
Sbjct: 294 KKDENQVTQIKLLMDVNMAC-LNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352
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Transfers a methyl group to 7-hydroxyls of the isoflavones daidzein, genistein and 6,7,4'-trihydroxyisoflavone. Can also methylate (+)6a-hydroxymaackiain with lower efficiency. Medicago sativa (taxid: 3879) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 EC: 0 |
| >sp|B6VJS4|ROMT_VITVI Trans-resveratrol di-O-methyltransferase OS=Vitis vinifera GN=ROMT PE=1 SV=2 | Back alignment and function description |
|---|
Score = 200 bits (509), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 90/180 (50%), Positives = 128/180 (71%)
Query: 1 MATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNL 60
+ ++L+K+ + +F GL S+VDVGGGTG A+ I+ AFP + CTVLDL H V + + NL
Sbjct: 178 LTSVLLKEGQGVFAGLNSLVDVGGGTGKVAKAIANAFPHLNCTVLDLSHVVAGLQGSKNL 237
Query: 61 KYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDE 120
Y GDMF+ IPP+DA K + H + +E+C+K+LK+CREAI S GKV+IID+++ +
Sbjct: 238 NYFAGDMFEAIPPADAILLKWILHDWSNEECVKILKRCREAIPSKENGGKVIIIDMIMMK 297
Query: 121 KEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFGIKSLIEVYP 180
+ D + TE++L FD+ M G+ER E EW LF++AGF+HYKI PI G++SLIEVYP
Sbjct: 298 NQGDYKSTETQLFFDMTMMIFAPGRERDENEWEKLFLDAGFSHYKITPILGLRSLIEVYP 357
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Catalyzes the biosynthesis of pterostilbene from resveratrol. Pterostilbene has both antifungal and pharmacological properties. Also has activity toward resveratrol monomethyl ether (RME). Vitis vinifera (taxid: 29760) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 0 |
| >sp|Q84KK5|D7OMT_GLYEC Isoflavone 7-O-methyltransferase OS=Glycyrrhiza echinata GN=D7OMT PE=1 SV=1 | Back alignment and function description |
|---|
Score = 200 bits (509), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 90/180 (50%), Positives = 129/180 (71%), Gaps = 1/180 (0%)
Query: 1 MATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNL 60
M L ++DC F+G+ S+VDVGGG G A+II + FP +KC V D P V ++ T+NL
Sbjct: 179 MINLALRDCNSGFEGVESIVDVGGGIGTTAKIICDTFPNLKCIVFDRPKVVENLSGTNNL 238
Query: 61 KYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDE 120
Y+ GDMFQ +P +DA K + H + D DC ++L+KC+EA++S+GE+GKV+II++VI+E
Sbjct: 239 SYVGGDMFQSVPKADAVLLKWILHNWTDNDCRRILEKCKEAVSSDGEKGKVIIIEMVINE 298
Query: 121 KEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFGIKSLIEVYP 180
+D+ E+T +KLL D+ M + GKER+E+EW LF+ AGF YKI+P+ G SLIEVYP
Sbjct: 299 NQDEHEITGTKLLMDVNMAC-LNGKERSEEEWKKLFIEAGFRDYKISPLTGFLSLIEVYP 357
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7-O-methyltransferase involved in the biosynthesis of isoformononetin. Can use daidzein as substrate, but not medicarpin or 2,7,4'-trihydroxyisoflavanone. Glycyrrhiza echinata (taxid: 46348) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 EC: 0 |
| >sp|C6TAY1|SOMT2_SOYBN Flavonoid 4'-O-methyltransferase OS=Glycine max PE=1 SV=1 | Back alignment and function description |
|---|
Score = 200 bits (508), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 90/180 (50%), Positives = 128/180 (71%)
Query: 1 MATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNL 60
M L +DC +F+GL S+VDVGGGTG A+II EAFP +KC VL+ P+ V ++ ++NL
Sbjct: 179 MLNLAFRDCNWVFEGLESIVDVGGGTGITAKIICEAFPKLKCMVLERPNVVENLSGSNNL 238
Query: 61 KYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDE 120
++ GDMF+ IP +DA K V H ++D DC+K+L+ C+EAI+ + GKV++ID VI+E
Sbjct: 239 TFVGGDMFKCIPKADAVLLKLVLHNWNDNDCMKILENCKEAISGESKTGKVVVIDTVINE 298
Query: 121 KEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFGIKSLIEVYP 180
+D+R++TE KLL D+ M + GKER E++W LF+ AGF YKI+P G SLIE+YP
Sbjct: 299 NKDERQVTELKLLMDVHMACIINGKERKEEDWKKLFMEAGFQSYKISPFTGYLSLIEIYP 358
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S-adenosyl-L-methionine-dependent methyltransferase that catalyzes the 4'-methylation of naringenin (4',5,7-trihydroxyflavanone) into ponciretin (4'-methoxy-5,7-dihydroxyflavanone). In vitro, also able to convert apigenin, daidzein, genistein and quercetin into the 4'-O-methylated compounds acacetin, formononetin, biochanine A and 4'-methylated quercetin, respectively. Glycine max (taxid: 3847) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 3 EC: 1 |
| >sp|O24305|M3OM1_PEA 6a-hydroxymaackiain methyltransferase 1 OS=Pisum sativum GN=HMM1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 192 bits (489), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 92/177 (51%), Positives = 123/177 (69%)
Query: 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYI 63
L +++ + +F+GL S+VDV GGTG A++I EAFP IKCTV D P V ++ +NL ++
Sbjct: 184 LAIQENKHVFEGLESLVDVAGGTGGVAKLIHEAFPHIKCTVFDQPQVVGNLTGNENLNFV 243
Query: 64 EGDMFQFIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKED 123
GDMF+ +P +DA K V H ++DE LK+LK +EAI+ G+ GKV+IIDI IDE D
Sbjct: 244 GGDMFKSVPSADAVLLKWVLHDWNDELSLKILKNSKEAISHKGKDGKVIIIDISIDENSD 303
Query: 124 DRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFGIKSLIEVYP 180
DR LTE +L +D+ M GKERT++EW L +AGF+ YKI PI G KSLIEVYP
Sbjct: 304 DRGLTELQLEYDVVMLTMFLGKERTKKEWEKLIYDAGFSRYKITPICGFKSLIEVYP 360
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Methyltransferase involved in the phytoalexin pisatin biosynthesis. Has both 3- and 4'-O-methyltransferase activities. Can use (+)-6a-hydroxymaackiain, 2,7,4'-trihydroxyisoflavanone and with much less activity (+)-medicarpin as substrates, but not (-)-6a-hydroxymaackiain, daidzein, formononetin or isoliquiritigenin. May be involved in formononetin biosynthesis. Pisum sativum (taxid: 3888) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 6 |
| >sp|Q6VMW0|Q8OMT_MENPI 8-hydroxyquercetin 8-O-methyltransferase OS=Mentha piperita GN=OMT2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 187 bits (475), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 93/179 (51%), Positives = 138/179 (77%), Gaps = 1/179 (0%)
Query: 3 TLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKY 62
++L +CR IF GL SMVDVGGGTGA A+ I+ AFPG++CTVLDLP+ V + ++NL +
Sbjct: 188 SILTTECREIFDGLESMVDVGGGTGATAKGIAAAFPGMECTVLDLPNVVGGLKGSENLSF 247
Query: 63 IEGDMFQFIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIA-SNGERGKVLIIDIVIDEK 121
+ GDMF FIP +DA F K + H ++DE+C+K+LKKC+EAI+ SN K+++++IV++++
Sbjct: 248 VSGDMFDFIPHADAIFMKFILHDWNDEECVKILKKCKEAISRSNNSCRKIILVEIVMEDE 307
Query: 122 EDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFGIKSLIEVYP 180
++ E TE+KL FD+ M + GKER+E+EWG LF +AGFT+YKI + G++S+IEV+P
Sbjct: 308 KETHEATETKLFFDMQMLAIITGKERSEKEWGKLFFDAGFTNYKITRVLGLRSVIEVFP 366
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8-O-methyltransferase active on various hydroxylated flavonoid substrates, including 7,8,3'4'-tetrahydroxy-flavone, 7,8,4'-trihydroxy-flavone and 8-hydroxy-flavone 7-methyl ether. Mentha piperita (taxid: 34256) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 8 |
| >sp|Q84KK4|I4OMT_LOTJA Isoflavone 4'-O-methyltransferase OS=Lotus japonicus GN=HI4'OMT PE=1 SV=1 | Back alignment and function description |
|---|
Score = 183 bits (465), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 94/180 (52%), Positives = 125/180 (69%)
Query: 1 MATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNL 60
M L +K+C+ +F+GL S+VDV GG G ++I EAFP +KCTV D P V ++ +NL
Sbjct: 186 MFKLALKECKHVFEGLGSLVDVAGGRGGVTKLIREAFPHVKCTVFDQPQVVANLTGDENL 245
Query: 61 KYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDE 120
++ GDMF+ +PP+DA K V H ++DE LK+LK C+EAI+ G+ GKV+IIDI IDE
Sbjct: 246 NFVGGDMFKSVPPADAVLLKWVLHDWNDELSLKILKNCKEAISGRGKEGKVIIIDISIDE 305
Query: 121 KEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFGIKSLIEVYP 180
DDRELTE KL +D+ M GKER ++EW L +AGF+ YKI PI G KSLIEV+P
Sbjct: 306 TSDDRELTELKLDYDLVMLTMFNGKEREKKEWEKLIYDAGFSSYKITPICGFKSLIEVFP 365
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2-hydroxyisoflavanone 4'-O-methyltransferase involved in the biosynthesis of formononetin. Can use 2,7,4'-trihydroxyisoflavanone as substrate, but not daidzein. Lotus japonicus (taxid: 34305) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 1 EC: 2 |
| >sp|Q9LEL6|6OMT_COPJA (RS)-norcoclaurine 6-O-methyltransferase OS=Coptis japonica PE=1 SV=1 | Back alignment and function description |
|---|
Score = 180 bits (456), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 83/178 (46%), Positives = 120/178 (67%), Gaps = 3/178 (1%)
Query: 3 TLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKY 62
+ LVK+C IF G+ ++VDVGGGTG R I+ AFP IKCTV DLPH + D P +
Sbjct: 172 SALVKECGNIFNGITTLVDVGGGTGTAVRNIANAFPHIKCTVYDLPHVIADSPGYSEVHC 231
Query: 63 IEGDMFQFIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKE 122
+ GDMF+FIP +DA K + H +DD++C+++LK+C+EA+ G GKV+I+DIV++ +
Sbjct: 232 VAGDMFKFIPKADAIMMKCILHDWDDKECIEILKRCKEAVPVKG--GKVIIVDIVLN-VQ 288
Query: 123 DDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFGIKSLIEVYP 180
+ T+ +L D+ M N GGKERTE+EW L +AG+ +KI I ++S+IE YP
Sbjct: 289 SEHPYTKMRLTLDLDMMLNTGGKERTEEEWKKLIHDAGYKGHKITQITAVQSVIEAYP 346
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Catalyzes the transfer of the S-methyl group of S-adenosyl-L-methionine (AdoMet) to the 6-hydroxyl group of norcoclaurine to form coclaurine. Coptis japonica (taxid: 3442) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 180 | ||||||
| 224077038 | 359 | flavonoid o-methyltransferase related [P | 1.0 | 0.501 | 0.611 | 3e-64 | |
| 225443568 | 361 | PREDICTED: isoflavone-7-O-methyltransfer | 1.0 | 0.498 | 0.605 | 3e-62 | |
| 224116348 | 372 | flavonoid o-methyltransferase related [P | 1.0 | 0.483 | 0.588 | 2e-61 | |
| 255562994 | 359 | o-methyltransferase, putative [Ricinus c | 1.0 | 0.501 | 0.580 | 4e-60 | |
| 225443570 | 354 | PREDICTED: isoflavone-7-O-methyltransfer | 1.0 | 0.508 | 0.583 | 6e-59 | |
| 359483947 | 355 | PREDICTED: isoflavone-7-O-methyltransfer | 0.966 | 0.490 | 0.594 | 7e-59 | |
| 255563164 | 355 | o-methyltransferase, putative [Ricinus c | 1.0 | 0.507 | 0.572 | 9e-59 | |
| 147788173 | 354 | hypothetical protein VITISV_009881 [Viti | 1.0 | 0.508 | 0.577 | 2e-58 | |
| 359483934 | 358 | PREDICTED: isoflavone-7-O-methyltransfer | 1.0 | 0.502 | 0.588 | 6e-57 | |
| 147788174 | 329 | hypothetical protein VITISV_009882 [Viti | 1.0 | 0.547 | 0.588 | 7e-57 |
| >gi|224077038|ref|XP_002305103.1| flavonoid o-methyltransferase related [Populus trichocarpa] gi|222848067|gb|EEE85614.1| flavonoid o-methyltransferase related [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 249 bits (636), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 110/180 (61%), Positives = 145/180 (80%)
Query: 1 MATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNL 60
M L+++DC+PIF+GL SMVDVGGGTG+ +RIISEAFP + CTVL+LP +T++ T NL
Sbjct: 180 MMNLVIRDCKPIFEGLNSMVDVGGGTGSLSRIISEAFPHMNCTVLELPQVITNLEGTKNL 239
Query: 61 KYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDE 120
Y+ GDMFQ IP +DA K +FH + DEDCLK+LKKC+EAI+S + GKV+I+D+VIDE
Sbjct: 240 NYVGGDMFQHIPSADAVLLKLIFHGWSDEDCLKILKKCKEAISSKEKGGKVIIVDVVIDE 299
Query: 121 KEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFGIKSLIEVYP 180
K+D++ELTE+KLLFD+ M GKER+ +EW LF+ AGF+HYKI P+FG++SLIEVYP
Sbjct: 300 KKDEKELTETKLLFDMLMMVVAAGKERSVKEWEKLFLEAGFSHYKITPLFGLRSLIEVYP 359
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225443568|ref|XP_002278092.1| PREDICTED: isoflavone-7-O-methyltransferase 9 isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 243 bits (619), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 109/180 (60%), Positives = 143/180 (79%)
Query: 1 MATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNL 60
M +L++KDCRP+F+GL S+VDVGGG G ARIISEAFP +KCTV DLPH V++ P+ NL
Sbjct: 182 MMSLVIKDCRPVFEGLGSLVDVGGGKGLIARIISEAFPQLKCTVFDLPHVVSNFPECGNL 241
Query: 61 KYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDE 120
KY+ GDMFQ +P +DA K V H DE+C+K+LKKCREAI S + GKV++IDIVI+E
Sbjct: 242 KYVGGDMFQSVPTADAILLKLVLHSLSDEECVKILKKCREAIPSKEKGGKVIVIDIVINE 301
Query: 121 KEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFGIKSLIEVYP 180
K+++ ++TE+KLLFD+ M V G+ER E+EW LF+ AGF+HYKI PIFG++SLIEV+P
Sbjct: 302 KKEEHDITEAKLLFDLLMMTVVTGRERNEKEWEKLFLEAGFSHYKINPIFGLRSLIEVFP 361
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224116348|ref|XP_002331960.1| flavonoid o-methyltransferase related [Populus trichocarpa] gi|222874737|gb|EEF11868.1| flavonoid o-methyltransferase related [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 240 bits (613), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 106/180 (58%), Positives = 143/180 (79%)
Query: 1 MATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNL 60
M L+++DC+PIF+GL SMVDVGGGTG+ ARIISE FP + CTVL++P + ++ T+NL
Sbjct: 193 MMNLVIRDCKPIFEGLDSMVDVGGGTGSLARIISETFPHMNCTVLEIPQVIANLEGTENL 252
Query: 61 KYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDE 120
KY+ GDMFQ IP +DA K +FH + DEDC+K+LKKC+EAI+S + GKV+I+D+VI+E
Sbjct: 253 KYVGGDMFQHIPSADAVLLKLIFHGWSDEDCVKILKKCKEAISSKEKGGKVIIVDVVINE 312
Query: 121 KEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFGIKSLIEVYP 180
K+D+ ELTE+KLLFD+ M GKER+ +EW LF+ AGF+HYKI +FG++SLIEVYP
Sbjct: 313 KKDEHELTETKLLFDMLMMVVAAGKERSVEEWERLFLEAGFSHYKITSLFGLRSLIEVYP 372
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255562994|ref|XP_002522501.1| o-methyltransferase, putative [Ricinus communis] gi|223538192|gb|EEF39801.1| o-methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 236 bits (601), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 105/181 (58%), Positives = 144/181 (79%), Gaps = 1/181 (0%)
Query: 1 MATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNL 60
M L+++DC+PIF+G+ S+VDVGGG G+ ARIISEAFP +KCTVL+LP + ++ T NL
Sbjct: 179 MMNLVIRDCKPIFEGVNSLVDVGGGNGSLARIISEAFPDMKCTVLELPQVIGNLEGTKNL 238
Query: 61 KYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERG-KVLIIDIVID 119
Y+ GDMFQ IP +DA K + H ++DE+C+K+LKKC+EAI+S G+ KV++ID+VI+
Sbjct: 239 NYVGGDMFQHIPSADAIILKLILHGWNDEECVKILKKCKEAISSTGKGSEKVIVIDLVIN 298
Query: 120 EKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFGIKSLIEVY 179
+K+D+ E TE+KLLFD+ M F GKERTE+EWG LF+ AGF+H+KI PI G++SLIEVY
Sbjct: 299 DKKDEYEFTETKLLFDMLMMFVATGKERTEKEWGELFLKAGFSHFKITPILGLRSLIEVY 358
Query: 180 P 180
P
Sbjct: 359 P 359
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225443570|ref|XP_002278127.1| PREDICTED: isoflavone-7-O-methyltransferase 9 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 232 bits (591), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 105/180 (58%), Positives = 138/180 (76%)
Query: 1 MATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNL 60
M +L +++C+ IF+GL S+VDVGGGTG AR I EAFP +KCTVLDLP V ++P+++NL
Sbjct: 175 MMSLAIRECKEIFEGLSSLVDVGGGTGTMARGICEAFPHLKCTVLDLPQVVANLPKSENL 234
Query: 61 KYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDE 120
Y+ GDMFQ IP +DA F K+V H + DEDC+K+LK+CREAI S+ E GKV+IID+V+
Sbjct: 235 DYVGGDMFQSIPSADAIFIKSVLHNWGDEDCVKILKRCREAIPSSAEGGKVIIIDLVLSN 294
Query: 121 KEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFGIKSLIEVYP 180
K+D+ EL ++KL D+ M V GKER E+EW LF+ AGF+HYKI P FG+ SLIEVYP
Sbjct: 295 KKDEHELAKTKLFNDMMMMVLVAGKERCEEEWEKLFLEAGFSHYKITPRFGVLSLIEVYP 354
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359483947|ref|XP_003633042.1| PREDICTED: isoflavone-7-O-methyltransferase 9 isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 231 bits (590), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 107/180 (59%), Positives = 141/180 (78%), Gaps = 6/180 (3%)
Query: 1 MATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNL 60
M +L++KDCRP+F+GL S+VDVGGG G ARIISEAFP +KCTV DLPH V++ P+ NL
Sbjct: 182 MMSLVIKDCRPVFEGLGSLVDVGGGKGLIARIISEAFPQLKCTVFDLPHVVSNFPECGNL 241
Query: 61 KYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDE 120
KY+ GDMFQ +P +DA K DE+C+K+LKKCREAI S + GKV++IDIVI+E
Sbjct: 242 KYVGGDMFQSVPTADAILLK------GDEECVKILKKCREAIPSKEKGGKVIVIDIVINE 295
Query: 121 KEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFGIKSLIEVYP 180
K+++ ++TE+KLLFD+ M V G+ER E+EW LF+ AGF+HYKI PIFG++SLIEV+P
Sbjct: 296 KKEEHDITEAKLLFDLLMMTVVTGRERNEKEWEKLFLEAGFSHYKINPIFGLRSLIEVFP 355
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255563164|ref|XP_002522586.1| o-methyltransferase, putative [Ricinus communis] gi|223538277|gb|EEF39886.1| o-methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 231 bits (589), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 103/180 (57%), Positives = 137/180 (76%)
Query: 1 MATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNL 60
M L++ DC+PIF+GL S+VDVGGG G+ ARIIS+ FP ++CTVLD V + + NL
Sbjct: 176 MMNLVIGDCKPIFEGLNSVVDVGGGNGSLARIISQNFPHMQCTVLDRAQVVGSLEGSKNL 235
Query: 61 KYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDE 120
Y+ GDMF+ +P +DA K V H ++DE+C+++LK CREAIAS G+ GKV++IDIV+DE
Sbjct: 236 NYVPGDMFKHVPSADAAILKLVLHCWNDEECIRILKNCREAIASKGKGGKVIVIDIVVDE 295
Query: 121 KEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFGIKSLIEVYP 180
K++ ELTE+KLLFDI M V G ERTE+EW LF+ AGF+HYKI P+ G++SLIEVYP
Sbjct: 296 KKEQDELTETKLLFDILMMVVVNGTERTEKEWKRLFLEAGFSHYKITPLLGVRSLIEVYP 355
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147788173|emb|CAN75970.1| hypothetical protein VITISV_009881 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 104/180 (57%), Positives = 137/180 (76%)
Query: 1 MATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNL 60
M +L +++C+ IF+G S+VDVGGGTG AR I EAFP +KCTVLDLP V ++P+++NL
Sbjct: 175 MMSLAIRECKEIFEGXSSLVDVGGGTGTMARGICEAFPHLKCTVLDLPQVVANLPKSENL 234
Query: 61 KYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDE 120
Y+ GDMFQ IP +DA F K+V H + DEDC+K+LK+CREAI S+ E GKV+IID+V+
Sbjct: 235 DYVGGDMFQSIPSADAIFIKSVLHNWGDEDCVKILKRCREAIPSSAEGGKVIIIDLVLSN 294
Query: 121 KEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFGIKSLIEVYP 180
K+D+ EL ++KL D+ M V GKER E+EW LF+ AGF+HYKI P FG+ SLIEVYP
Sbjct: 295 KKDEHELAKTKLFNDMMMMVLVAGKERCEEEWEKLFLEAGFSHYKITPRFGVLSLIEVYP 354
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359483934|ref|XP_003633039.1| PREDICTED: isoflavone-7-O-methyltransferase 9 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 225 bits (573), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 106/180 (58%), Positives = 141/180 (78%)
Query: 1 MATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNL 60
M+ + ++ +P+F+GL S+VD+GGGTG ARIISEAFP +KCTV DLPH V ++P++ NL
Sbjct: 179 MSVVNFRELKPVFEGLSSLVDLGGGTGLLARIISEAFPQLKCTVFDLPHVVANLPESRNL 238
Query: 61 KYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDE 120
+Y+ GDMFQ +P +DA K V H + DEDCLK+LKKCREAI S E GKV+IID+VI+E
Sbjct: 239 EYVGGDMFQSVPSADAILLKCVLHDWSDEDCLKILKKCREAIRSEEEGGKVIIIDVVINE 298
Query: 121 KEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFGIKSLIEVYP 180
K+D+ ++TE+KLL D+ M V G+ER E+EW LF+ AGF HYKI PIFG++SLIEV+P
Sbjct: 299 KKDEDDITETKLLMDMMMMTLVNGRERNEKEWERLFLEAGFRHYKITPIFGLRSLIEVFP 358
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147788174|emb|CAN75971.1| hypothetical protein VITISV_009882 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 225 bits (573), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 106/180 (58%), Positives = 141/180 (78%)
Query: 1 MATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNL 60
M+ + ++ +P+F+GL S+VD+GGGTG ARIISEAFP +KCTV DLPH V ++P++ NL
Sbjct: 150 MSVVNFRELKPVFEGLSSLVDLGGGTGLLARIISEAFPQLKCTVFDLPHVVANLPESRNL 209
Query: 61 KYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDE 120
+Y+ GDMFQ +P +DA K V H + DEDCLK+LKKCREAI S E GKV+IID+VI+E
Sbjct: 210 EYVGGDMFQSVPSADAILLKCVLHDWSDEDCLKILKKCREAIRSEEEGGKVIIIDVVINE 269
Query: 121 KEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFGIKSLIEVYP 180
K+D+ ++TE+KLL D+ M V G+ER E+EW LF+ AGF HYKI PIFG++SLIEV+P
Sbjct: 270 KKDEDDITETKLLMDMMMMTLVNGRERNEKEWERLFLEAGFRHYKITPIFGLRSLIEVFP 329
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 180 | ||||||
| UNIPROTKB|Q6VMW0 | 366 | OMT2 "8-hydroxyquercetin 8-O-m | 0.988 | 0.486 | 0.486 | 6.6e-42 | |
| UNIPROTKB|Q84KK5 | 357 | D7OMT "Isoflavone 7-O-methyltr | 0.994 | 0.501 | 0.444 | 9.9e-39 | |
| UNIPROTKB|Q84KK6 | 367 | HI4'OMT "Isoflavone 4'-O-methy | 1.0 | 0.490 | 0.455 | 3.4e-38 | |
| UNIPROTKB|Q84KK4 | 365 | HI4'OMT "Isoflavone 4'-O-methy | 1.0 | 0.493 | 0.444 | 4.3e-38 | |
| UNIPROTKB|A8QW53 | 374 | OMT3 "5-pentadecatrienyl resor | 0.977 | 0.470 | 0.385 | 7.4e-34 | |
| UNIPROTKB|Q8GSN1 | 348 | Q8GSN1 "Myricetin O-methyltran | 1.0 | 0.517 | 0.401 | 2.5e-33 | |
| UNIPROTKB|B0EXJ8 | 355 | 16OMT "Tabersonine 16-O-methyl | 0.988 | 0.501 | 0.397 | 8.5e-33 | |
| TAIR|locus:2132806 | 382 | AT4G35160 [Arabidopsis thalian | 0.95 | 0.447 | 0.344 | 1e-22 | |
| TAIR|locus:2132801 | 325 | AT4G35150 [Arabidopsis thalian | 0.95 | 0.526 | 0.350 | 2.1e-22 | |
| TAIR|locus:2153423 | 363 | OMT1 "AT5G54160" [Arabidopsis | 0.9 | 0.446 | 0.345 | 5.3e-20 |
| UNIPROTKB|Q6VMW0 OMT2 "8-hydroxyquercetin 8-O-methyltransferase" [Mentha x piperita (taxid:34256)] | Back alignment and assigned GO terms |
|---|
Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
Identities = 87/179 (48%), Positives = 119/179 (66%)
Query: 3 TLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKY 62
++L +CR IF GL SMVDVGGGTGA A+ I+ AFPG++CTVLDLP+ V + ++NL +
Sbjct: 188 SILTTECREIFDGLESMVDVGGGTGATAKGIAAAFPGMECTVLDLPNVVGGLKGSENLSF 247
Query: 63 IEGDMFQFIPPSDAXXXXXXXXXXDDEDCLKLLKKCREAIA-SNGERGXXXXXXXXXXXX 121
+ GDMF FIP +DA +DE+C+K+LKKC+EAI+ SN
Sbjct: 248 VSGDMFDFIPHADAIFMKFILHDWNDEECVKILKKCKEAISRSNNSCRKIILVEIVMEDE 307
Query: 122 XXXRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFGIKSLIEVYP 180
E TE+KL FD+ M + GKER+E+EWG LF +AGFT+YKI + G++S+IEV+P
Sbjct: 308 KETHEATETKLFFDMQMLAIITGKERSEKEWGKLFFDAGFTNYKITRVLGLRSVIEVFP 366
|
|
| UNIPROTKB|Q84KK5 D7OMT "Isoflavone 7-O-methyltransferase" [Glycyrrhiza echinata (taxid:46348)] | Back alignment and assigned GO terms |
|---|
Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
Identities = 80/180 (44%), Positives = 111/180 (61%)
Query: 1 MATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNL 60
M L ++DC F+G+ S+VDVGGG G A+II + FP +KC V D P V ++ T+NL
Sbjct: 179 MINLALRDCNSGFEGVESIVDVGGGIGTTAKIICDTFPNLKCIVFDRPKVVENLSGTNNL 238
Query: 61 KYIEGDMFQFIPPSDAXXXXXXXXXXDDEDCLKLLKKCREAIASNGERGXXXXXXXXXXX 120
Y+ GDMFQ +P +DA D DC ++L+KC+EA++S+GE+G
Sbjct: 239 SYVGGDMFQSVPKADAVLLKWILHNWTDNDCRRILEKCKEAVSSDGEKGKVIIIEMVINE 298
Query: 121 XXXXRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFGIKSLIEVYP 180
E+T +KLL D+ M + GKER+E+EW LF+ AGF YKI+P+ G SLIEVYP
Sbjct: 299 NQDEHEITGTKLLMDVNMAC-LNGKERSEEEWKKLFIEAGFRDYKISPLTGFLSLIEVYP 357
|
|
| UNIPROTKB|Q84KK6 HI4'OMT "Isoflavone 4'-O-methyltransferase" [Glycyrrhiza echinata (taxid:46348)] | Back alignment and assigned GO terms |
|---|
Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
Identities = 82/180 (45%), Positives = 110/180 (61%)
Query: 1 MATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNL 60
M L +K+CR +F+GL S+VDVGGGTG ++I E FP +KCTV D P V ++ +NL
Sbjct: 188 MFKLALKECRHVFEGLESLVDVGGGTGGVTKLIHEEFPHLKCTVFDQPQVVGNLSGNENL 247
Query: 61 KYIEGDMFQFIPPSDAXXXXXXXXXXDDEDCLKLLKKCREAIASNGERGXXXXXXXXXXX 120
K++ GDMF+ IPP+DA +DE LK+LK +EAI+ G+ G
Sbjct: 248 KFVGGDMFKSIPPADAVLLKWVLHDWNDELSLKILKNSKEAISGKGKEGKVIIIDISIDE 307
Query: 121 XXXXRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFGIKSLIEVYP 180
RELTE +L +D+ M GKER ++EW L +AGF+ YKI PI G KSLIEV+P
Sbjct: 308 ASGDRELTELQLDYDLVMLTMFNGKEREKKEWEKLISDAGFSSYKITPICGFKSLIEVFP 367
|
|
| UNIPROTKB|Q84KK4 HI4'OMT "Isoflavone 4'-O-methyltransferase" [Lotus japonicus (taxid:34305)] | Back alignment and assigned GO terms |
|---|
Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
Identities = 80/180 (44%), Positives = 109/180 (60%)
Query: 1 MATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNL 60
M L +K+C+ +F+GL S+VDV GG G ++I EAFP +KCTV D P V ++ +NL
Sbjct: 186 MFKLALKECKHVFEGLGSLVDVAGGRGGVTKLIREAFPHVKCTVFDQPQVVANLTGDENL 245
Query: 61 KYIEGDMFQFIPPSDAXXXXXXXXXXDDEDCLKLLKKCREAIASNGERGXXXXXXXXXXX 120
++ GDMF+ +PP+DA +DE LK+LK C+EAI+ G+ G
Sbjct: 246 NFVGGDMFKSVPPADAVLLKWVLHDWNDELSLKILKNCKEAISGRGKEGKVIIIDISIDE 305
Query: 121 XXXXRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFGIKSLIEVYP 180
RELTE KL +D+ M GKER ++EW L +AGF+ YKI PI G KSLIEV+P
Sbjct: 306 TSDDRELTELKLDYDLVMLTMFNGKEREKKEWEKLIYDAGFSSYKITPICGFKSLIEVFP 365
|
|
| UNIPROTKB|A8QW53 OMT3 "5-pentadecatrienyl resorcinol O-methyltransferase" [Sorghum bicolor (taxid:4558)] | Back alignment and assigned GO terms |
|---|
Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
Identities = 69/179 (38%), Positives = 107/179 (59%)
Query: 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTD--NLK 61
+L+K+ +F G+ S+VDV GG G I+ AFP +KCTVLDLPH V P + N++
Sbjct: 197 ILLKEFSEVFLGIDSLVDVAGGVGGATMAIAAAFPCLKCTVLDLPHVVAKAPSSSIGNVQ 256
Query: 62 YIEGDMFQFIPPSDAXXXXXXXXXXDDEDCLKLLKKCREAIASNGERGXXXXXXXXXXXX 121
++ GDMF+ IPP++ +++C+K+LK C++AI S G
Sbjct: 257 FVGGDMFESIPPANVVLLKWILHDWSNDECIKILKNCKQAIPSRDAGGKIIIIDVVVGSD 316
Query: 122 XXXRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFGIKSLIEVYP 180
+L E+++++D+ + +GG ER EQEW +F+ AGF YKI PI G++S+IE+YP
Sbjct: 317 SSDTKLLETQVIYDLHL-MKIGGVERDEQEWKKIFLEAGFKDYKIMPILGLRSIIELYP 374
|
|
| UNIPROTKB|Q8GSN1 Q8GSN1 "Myricetin O-methyltransferase" [Catharanthus roseus (taxid:4058)] | Back alignment and assigned GO terms |
|---|
Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
Identities = 73/182 (40%), Positives = 109/182 (59%)
Query: 1 MATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNL 60
++ +L+ + +F+GL S+VDVGGGTG A+ I+++FP +KCTV DLPH V ++ T+NL
Sbjct: 167 VSKMLIPEFNYLFEGLDSLVDVGGGTGTIAKAIAKSFPDLKCTVFDLPHVVANLESTENL 226
Query: 61 KYIEGDMFQFIPPSDAXXXXXXXXXXDDEDCLKLLKKCREAIASNGERGXXXXXXXXXXX 120
+++ GDMF+ IP ++A DE+C+K+LK CR+AI + G
Sbjct: 227 EFVGGDMFEKIPSANAILLKWILHDWKDEECVKVLKMCRKAIPEKEKGGKVILIETVLMD 286
Query: 121 XXXXR--ELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFGIKSLIEV 178
E ++++ DI M KERTE+EW +LF AGF+ YKI P+ +S IEV
Sbjct: 287 SKKHENEEAVKAQISSDIDMMVFFTAKERTEEEWATLFREAGFSGYKIFPMIDFRSPIEV 346
Query: 179 YP 180
YP
Sbjct: 347 YP 348
|
|
| UNIPROTKB|B0EXJ8 16OMT "Tabersonine 16-O-methyltransferase" [Catharanthus roseus (taxid:4058)] | Back alignment and assigned GO terms |
|---|
Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
Identities = 72/181 (39%), Positives = 108/181 (59%)
Query: 1 MATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNL 60
++ LL+ + + +F+GL S+VD+GGGTG A+ I++ FP +KCTV DLPH V ++ +N+
Sbjct: 177 ISKLLIGEYKFLFEGLASLVDIGGGTGTIAKAIAKNFPQLKCTVFDLPHVVANLESKENV 236
Query: 61 KYIEGDMFQFIPPSDAXXXXXXXXXXDDEDCLKLLKKCREAIASNGERGXXXXXXXXXXX 120
+++ GDMF+ IP ++A +DEDC+K+LK C++AI + G G
Sbjct: 237 EFVAGDMFEKIPSANAIFLKWILHDWNDEDCVKILKSCKKAIPAKG--GKVIIIDMVMYS 294
Query: 121 XXXXRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFGI-KSLIEVY 179
L +++ D+ M N KER E+EW LF AGF+ YKI P +SLIEVY
Sbjct: 295 DKKDDHLVKTQTSMDMAMLVNFAAKERCEKEWAFLFKEAGFSDYKIYPKLDFTRSLIEVY 354
Query: 180 P 180
P
Sbjct: 355 P 355
|
|
| TAIR|locus:2132806 AT4G35160 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
Identities = 61/177 (34%), Positives = 88/177 (49%)
Query: 9 CRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYIEGDMF 68
C +F G+ +MVDVGGGTG ++ + FP IK DLPH + D ++ +EGDMF
Sbjct: 204 CHGLFDGVTTMVDVGGGTGETMGMLVKEFPWIKGFNFDLPHVIEVAEVLDGVENVEGDMF 263
Query: 69 QFIPPSDAXXXXXXXXXXDDEDCLKLLKKCREAIASN-GE----RGXXXXXXXXXXXXXX 123
IP DA D+DC+K+LK C+EA+ N G+
Sbjct: 264 DSIPACDAIFIKWVLHDWGDKDCIKILKNCKEAVPPNIGKVLIVESVIGENKKTMIVDER 323
Query: 124 XRELTESKLLFDIFMNFNVG-GKERTEQEWGSLFVNAGFTHYKIAPIFGIKSLIEVY 179
+L +L+ D+ M + GKERT +EW + AGF Y++ I ++SLI Y
Sbjct: 324 DEKLEHVRLMLDMVMMAHTSTGKERTLKEWDFVLKEAGFARYEVRDIDDVQSLIIAY 380
|
|
| TAIR|locus:2132801 AT4G35150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
Identities = 62/177 (35%), Positives = 88/177 (49%)
Query: 9 CRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYIEGDMF 68
C+ +F G+ ++VDVGGGTG I+ + FP IK DLPH + D ++ +EGDMF
Sbjct: 147 CQGLFDGVATVVDVGGGTGETMGILVKEFPWIKGFNFDLPHVIEVAQVLDGVENVEGDMF 206
Query: 69 QFIPPSDAXXXXXXXXXXDDEDCLKLLKKCREAIASN-GERGXXXXXXXXXXXXXXXRE- 126
IP SDA D+DC+K+LK C+EA+ N G+ E
Sbjct: 207 DSIPASDAVIIKWVLHDWGDKDCIKILKNCKEAVLPNIGKVLIVECVIGEKKNTMIAEER 266
Query: 127 ---LTESKLLFDIFMNFNVG-GKERTEQEWGSLFVNAGFTHYKIAPIFGIKSLIEVY 179
L +L D+ M + GKERT +EW + AGF Y++ ++SLI Y
Sbjct: 267 DDKLEHVRLQLDMVMMVHTSTGKERTLKEWDFVLTEAGFARYEVRDFDDVQSLIIAY 323
|
|
| TAIR|locus:2153423 OMT1 "AT5G54160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 238 (88.8 bits), Expect = 5.3e-20, P = 5.3e-20
Identities = 58/168 (34%), Positives = 86/168 (51%)
Query: 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQFIP 72
F+GL S+VDVGGG GA ++I +P +K DLPH + D P ++++ GDMF +P
Sbjct: 196 FEGLTSLVDVGGGIGATLKMIVSKYPNLKGINFDLPHVIEDAPSHPGIEHVGGDMFVSVP 255
Query: 73 PSDAXXXXXXXXXXDDEDCLKLLKKCREAIASNGERGXXXXXXXXXXXXXXXRELTESKL 132
DA DE C+K LK C E++ +G+ T+ +
Sbjct: 256 KGDAIFMKWICHDWSDEHCVKFLKNCYESLPEDGKVILAECILPETPDSSLS---TKQVV 312
Query: 133 LFD-IFMNFNVGGKERTEQEWGSLFVNAGFTHYKIA-PIFGIKSLIEV 178
D I + N GGKERTE+E+ +L +GF K+ FG+ +LIE+
Sbjct: 313 HVDCIMLAHNPGGKERTEKEFEALAKASGFKGIKVVCDAFGV-NLIEL 359
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 180 | |||
| pfam00891 | 239 | pfam00891, Methyltransf_2, O-methyltransferase | 2e-59 | |
| TIGR02716 | 306 | TIGR02716, C20_methyl_CrtF, C-20 methyltransferase | 1e-12 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 2e-06 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 7e-05 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 4e-04 | |
| COG4106 | 257 | COG4106, Tam, Trans-aconitate methyltransferase [G | 0.002 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 0.002 |
| >gnl|CDD|216177 pfam00891, Methyltransf_2, O-methyltransferase | Back alignment and domain information |
|---|
Score = 184 bits (470), Expect = 2e-59
Identities = 69/156 (44%), Positives = 95/156 (60%), Gaps = 4/156 (2%)
Query: 1 MATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNL 60
+ + + F GL S+VDVGGGTGA A I A+P IK V DLPH + D P D +
Sbjct: 87 LVMKKILETAFDFSGLSSLVDVGGGTGALAAAIVRAYPHIKGIVFDLPHVIADAPSADRV 146
Query: 61 KYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDE 120
+++ GD F+ +P +DA K V H + DEDC+K+LK+C EA+ GKV+++++V+ E
Sbjct: 147 EFVGGDFFESVPEADAILLKWVLHDWSDEDCVKILKRCYEALPPG---GKVIVVEMVLPE 203
Query: 121 KEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLF 156
DD TE LL D+ M GGKERTE+EW L
Sbjct: 204 DPDDDLETE-VLLLDLNMLVLNGGKERTEKEWRKLL 238
|
This family includes a range of O-methyltransferases. These enzymes utilise S-adenosyl methionine. Length = 239 |
| >gnl|CDD|131763 TIGR02716, C20_methyl_CrtF, C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Score = 64.3 bits (156), Expect = 1e-12
Identities = 40/147 (27%), Positives = 78/147 (53%), Gaps = 13/147 (8%)
Query: 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ------- 56
LL+++ + G++ M+DVGGG G + + + FP + T+L+LP A+ + +
Sbjct: 140 LLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGV 197
Query: 57 TDNLKYIEGDMF-QFIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115
D ++ I D++ + P +DA F + + +++ + KK +A+ S G++LI+D
Sbjct: 198 ADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSG---GRLLILD 254
Query: 116 IVIDEKEDDRELTESKLLFDIFMNFNV 142
+VID+ E+ S + M F+V
Sbjct: 255 MVIDDPENPNFDYLSHYILGAGMPFSV 281
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-06
Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 19/108 (17%)
Query: 20 VDVGGGTGAFARIISEAFPGIKCTVLDL-PHAVTDMPQT------DNLKYIEGDM---FQ 69
+D+G GTG+ A ++ FPG + T +DL P + + + +++GD
Sbjct: 6 LDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGDAPDALD 65
Query: 70 FIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117
+ DA VF D L+LL + G L+++ V
Sbjct: 66 LLEGFDA-----VFIGGGGGDLLELLDALASLLKPGG----RLVLNAV 104
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 7e-05
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 13/98 (13%)
Query: 20 VDVGGGTGAFARIISEAFPGIKCTVLDL-PHAVTDMPQ---------TDNLKYIEGDMFQ 69
+D+G GTG R + EA PG++ T +D+ P A+ + ++ D
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAID 60
Query: 70 FIPPS-DAFFFKTVFHFFDDEDCLKLLKKCREAIASNG 106
P S D V H D +L+ R + G
Sbjct: 61 LDPGSFDVVVASNVLHHLADPR--AVLRNLRRLLKPGG 96
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 37.8 bits (88), Expect = 4e-04
Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 17/110 (15%)
Query: 20 VDVGGGTGAFARIISEAFPGIKCTVLDLPHAV-------TDMPQTDNLKYIEGDMFQFIP 72
+D+G GTGA A ++ PG + T +D+ DN++ ++GD + P
Sbjct: 3 LDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP 61
Query: 73 PS----DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVI 118
+ D H ED + L++ R + G VL++ +V+
Sbjct: 62 EADESFDVIISDPPLHHL-VEDLARFLEEARRLLKPGG----VLVLTLVL 106
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|226591 COG4106, Tam, Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 37.4 bits (87), Expect = 0.002
Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 17/109 (15%)
Query: 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLD-----LPHAVTDMPQTDN 59
V RP R +VD+G G G +++ +P T +D L A +P +
Sbjct: 25 RVPLERP-----RRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP---D 76
Query: 60 LKYIEGDMFQFIP--PSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNG 106
+ E D+ + P P+D F V + D +LL + +A G
Sbjct: 77 ATFEEADLRTWKPEQPTDLLFANAVLQWL--PDHPELLPRLVSQLAPGG 123
|
Length = 257 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 35.4 bits (82), Expect = 0.002
Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 11/97 (11%)
Query: 20 VDVGGGTGAFARIISEAFPGIKCTVLDL-PHAV-----TDMPQTDNLKYIEGDMFQFIPP 73
+D+G GTG R ++ A P T +D+ A+ + ++++ D
Sbjct: 2 LDLGCGTGRVLRALARAGP-SSVTGVDISKEALELAKERLRDKGPKVRFVVADARDLPFE 60
Query: 74 SDAF----FFKTVFHFFDDEDCLKLLKKCREAIASNG 106
+F + + LL++ + G
Sbjct: 61 EGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97
|
This family appears to be a methyltransferase domain. Length = 97 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 180 | |||
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 99.9 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.87 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.85 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.85 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.85 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.85 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.84 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.84 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.83 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.83 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.83 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.82 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 99.82 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.82 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.82 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.81 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.8 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.8 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.8 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.79 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.78 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.78 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.78 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.77 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.77 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.77 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.76 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.75 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.74 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.73 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.73 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.73 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.73 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.73 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.72 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.72 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.71 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.71 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.7 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.7 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.69 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.68 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.67 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.66 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.66 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.66 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.65 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.65 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.64 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.63 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.63 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.62 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.62 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.62 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.61 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.61 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.61 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.61 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.61 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.6 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.6 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.59 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.59 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.58 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.58 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.58 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.57 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.57 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.56 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.56 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.55 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.52 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.5 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.49 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.49 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.47 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.47 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.45 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 99.45 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.44 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.43 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.43 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.42 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.41 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.41 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.41 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.39 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.39 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.38 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.37 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.36 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.36 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.36 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.35 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.35 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.35 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.34 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.33 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.33 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.33 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.32 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.31 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 99.31 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.3 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.29 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.28 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.28 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.28 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.27 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.25 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.24 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.24 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.24 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.23 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.23 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.22 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 99.22 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.22 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.2 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.2 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.2 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 99.15 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.13 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.12 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.11 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.1 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.1 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 99.08 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.07 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.04 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.04 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 99.02 | |
| PLN02366 | 308 | spermidine synthase | 99.01 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.01 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 99.0 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 99.0 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.99 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.98 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.97 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.96 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.94 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.94 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.94 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.93 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.91 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.91 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.9 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.9 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.9 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.88 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.85 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.84 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.84 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.83 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.82 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.82 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.81 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.81 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.8 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.79 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 98.77 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.74 | |
| PLN02476 | 278 | O-methyltransferase | 98.73 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.73 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.69 | |
| PLN02823 | 336 | spermine synthase | 98.68 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.65 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.64 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.64 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.63 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 98.62 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.61 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.6 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.6 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.6 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.59 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.59 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.58 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.58 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.56 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.56 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.55 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.53 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.52 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.48 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.46 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.44 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.42 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.42 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.4 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.4 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.4 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.36 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.35 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.33 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.31 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.28 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 98.27 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.19 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.15 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 98.09 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 98.08 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.07 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.06 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 98.05 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.03 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.01 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.0 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.99 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 97.98 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 97.98 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.98 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.95 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 97.94 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 97.93 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.92 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.87 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 97.87 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.85 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 97.83 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 97.82 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.81 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 97.81 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.79 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 97.76 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.75 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.69 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 97.68 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.63 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.61 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.56 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.56 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 97.54 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.51 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.49 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 97.48 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.45 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.43 | |
| KOG2918 | 335 | consensus Carboxymethyl transferase [Posttranslati | 97.41 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.4 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.37 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 97.33 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 97.33 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.27 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 97.23 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 97.22 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 97.2 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 97.19 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 97.14 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 97.13 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 97.07 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.05 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 97.04 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 96.96 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 96.91 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 96.84 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 96.81 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.8 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 96.79 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 96.76 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 96.74 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 96.71 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 96.46 | |
| PF04072 | 183 | LCM: Leucine carboxyl methyltransferase; InterPro: | 96.26 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 96.26 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 96.19 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 96.13 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 96.13 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 95.91 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 95.9 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 95.77 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 95.67 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 95.62 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 95.51 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 95.36 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 95.3 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 95.29 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 95.26 | |
| PF12692 | 160 | Methyltransf_17: S-adenosyl-L-methionine methyltra | 95.22 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 95.09 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 95.02 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 94.91 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 94.83 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 94.53 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 94.26 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 94.11 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 94.02 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 93.79 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 93.59 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 93.57 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 93.48 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 92.86 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 92.73 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 92.66 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 92.63 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 92.55 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 92.5 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 92.29 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 91.98 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 91.72 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 91.68 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 91.43 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 91.43 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 91.05 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 90.65 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 90.4 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 90.37 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 90.17 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 90.1 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 90.07 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 89.52 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 88.74 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 88.69 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 88.59 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 88.23 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 88.11 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 87.94 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 87.67 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 87.06 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 86.96 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 86.67 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 86.62 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 86.49 | |
| PF07109 | 97 | Mg-por_mtran_C: Magnesium-protoporphyrin IX methyl | 86.34 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 86.01 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 85.97 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 85.94 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 85.82 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 83.14 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 83.1 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 83.06 | |
| PRK13699 | 227 | putative methylase; Provisional | 82.65 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 82.44 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 82.34 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 82.09 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 82.09 | |
| PHA01634 | 156 | hypothetical protein | 81.98 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 81.13 | |
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellu | 80.98 | |
| PF06016 | 1289 | Reovirus_L2: Reovirus core-spike protein lambda-2 | 80.54 |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.9e-23 Score=150.93 Aligned_cols=148 Identities=36% Similarity=0.779 Sum_probs=125.1
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCCCCCeeEEecCCcccCCCccEEEeccccc
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVFH 84 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~d~~~~~~~~D~v~~~~~l~ 84 (180)
+...++ +.+..+|+|||+|+|.++..+++.+|+++++.+|++++++.+++..|+++..+|++++.|.+|+++..+++|
T Consensus 92 ~~~~~d--~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~~D~~~l~~vLh 169 (241)
T PF00891_consen 92 LLEAFD--FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFFDPLPVADVYLLRHVLH 169 (241)
T ss_dssp HHHHST--TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TTTCCSSESEEEEESSGG
T ss_pred hhcccc--ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHHhhhccccceeeehhhh
Confidence 445566 778889999999999999999999999999999999988888888999999999998888899999999999
Q ss_pred cCChHHHHHHHHHHHHhhccCCCC--cEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHH
Q 030291 85 FFDDEDCLKLLKKCREAIASNGER--GKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFV 157 (180)
Q Consensus 85 ~~~~~~~~~~l~~~~~~L~p~~~~--G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 157 (180)
++++++...+|++++++|+| | |+++|.|...++........+.....++.++...+++.+|.++|.++++
T Consensus 170 ~~~d~~~~~iL~~~~~al~p---g~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~G~~rt~~e~~~ll~ 241 (241)
T PF00891_consen 170 DWSDEDCVKILRNAAAALKP---GKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTGGKERTEEEWEALLK 241 (241)
T ss_dssp GS-HHHHHHHHHHHHHHSEE---CTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHSSS-EEHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHhCC---CCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhcCCCCcCHHHHHHHhC
Confidence 99999999999999999999 8 9999999998887766433333356777777766789999999999874
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-21 Score=145.64 Aligned_cols=156 Identities=24% Similarity=0.463 Sum_probs=117.6
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCC-------CCCeeEEecCCcc-cCCCccE
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ-------TDNLKYIEGDMFQ-FIPPSDA 76 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~-------~~~~~~~~~d~~~-~~~~~D~ 76 (180)
+++.+. +++..+|||||||+|.++..+++.+|+.+++++|.+.+++.+++ ..++++..+|+.+ ..|.+|+
T Consensus 141 l~~~~~--~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~ 218 (306)
T TIGR02716 141 LLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADA 218 (306)
T ss_pred HHHHcC--CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCE
Confidence 444555 67788999999999999999999999999999999777776653 4679999999975 5667899
Q ss_pred EEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhh-ccceeeEeecCCcccCHHHHHHH
Q 030291 77 FFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKL-LFDIFMNFNVGGKERTEQEWGSL 155 (180)
Q Consensus 77 v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 155 (180)
|+++.++|+++++...+++++++++|+| ||++++.|....+..... +..... .....+. .......+.++|.++
T Consensus 219 v~~~~~lh~~~~~~~~~il~~~~~~L~p---gG~l~i~d~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~e~~~l 293 (306)
T TIGR02716 219 VLFCRILYSANEQLSTIMCKKAFDAMRS---GGRLLILDMVIDDPENPN-FDYLSHYILGAGMP-FSVLGFKEQARYKEI 293 (306)
T ss_pred EEeEhhhhcCChHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCCch-hhHHHHHHHHcccc-cccccCCCHHHHHHH
Confidence 9999999999888777899999999999 999999998765443221 111111 1111101 111123457999999
Q ss_pred HHHcCCeEEEEe
Q 030291 156 FVNAGFTHYKIA 167 (180)
Q Consensus 156 l~~aGf~~~~~~ 167 (180)
|+++||+.+++.
T Consensus 294 l~~aGf~~v~~~ 305 (306)
T TIGR02716 294 LESLGYKDVTMV 305 (306)
T ss_pred HHHcCCCeeEec
Confidence 999999988754
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.4e-22 Score=142.11 Aligned_cols=161 Identities=19% Similarity=0.310 Sum_probs=79.8
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCch-hhccCCC------CCCeeEEecCCcc-cCC--CccEEEecc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ-FIP--PSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~-~~~--~~D~v~~~~ 81 (180)
..++.+|||+|||+|..+..+++.. +..+++++|+|+ |++.+++ ..+++++++|..+ +.+ +||+|++.+
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 4677899999999999999998874 567999999976 9999975 3589999999955 333 599999999
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhh--ccceeeEee------------cCCccc
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKL--LFDIFMNFN------------VGGKER 147 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~------------~~~~~~ 147 (180)
.+++++|.. +.++++.++||| ||.+++.|+..+....-........ ......... .-..+.
T Consensus 125 glrn~~d~~--~~l~E~~RVLkP---GG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~ 199 (233)
T PF01209_consen 125 GLRNFPDRE--RALREMYRVLKP---GGRLVILEFSKPRNPLLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFP 199 (233)
T ss_dssp -GGG-SSHH--HHHHHHHHHEEE---EEEEEEEEEEB-SSHHHHHHHHH-------------------------------
T ss_pred hHHhhCCHH--HHHHHHHHHcCC---CeEEEEeeccCCCCchhhceeeeeeccccccccccccccccccccccccccccc
Confidence 999999988 779999999999 9999999998776532211111100 000000000 001345
Q ss_pred CHHHHHHHHHHcCCeEEEEeec-CCceeEEEE
Q 030291 148 TEQEWGSLFVNAGFTHYKIAPI-FGIKSLIEV 178 (180)
Q Consensus 148 ~~~~~~~~l~~aGf~~~~~~~~-~~~~~~~~~ 178 (180)
+.+++.++++++||+.++.... .|..+++.+
T Consensus 200 ~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g 231 (233)
T PF01209_consen 200 SPEELKELLEEAGFKNVEYRPLTFGIVTIHVG 231 (233)
T ss_dssp --------------------------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 7899999999999998877655 455555443
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-20 Score=133.64 Aligned_cols=160 Identities=19% Similarity=0.276 Sum_probs=118.0
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcc-cCC--CccEEEeccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ-FIP--PSDAFFFKTV 82 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~-~~~--~~D~v~~~~~ 82 (180)
.+++.+|||||||||..+..+++..+..+++++|+++ |+..+++ ..+++|+.+|+.+ +++ +||++.+++.
T Consensus 49 ~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fg 128 (238)
T COG2226 49 IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFG 128 (238)
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeeh
Confidence 3478999999999999999999998889999999976 9999985 2339999999955 443 6999999999
Q ss_pred cccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhh-hhh--ccceee-EeecC-----------Cccc
Q 030291 83 FHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTE-SKL--LFDIFM-NFNVG-----------GKER 147 (180)
Q Consensus 83 l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~-~~~~~-----------~~~~ 147 (180)
|++++|.+ ++|++++|+||| ||.+++.+...+....-..... ... ...... ....+ .++.
T Consensus 129 lrnv~d~~--~aL~E~~RVlKp---gG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p 203 (238)
T COG2226 129 LRNVTDID--KALKEMYRVLKP---GGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFP 203 (238)
T ss_pred hhcCCCHH--HHHHHHHHhhcC---CeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCC
Confidence 99999988 779999999999 9999999988765533211111 100 010111 11111 1345
Q ss_pred CHHHHHHHHHHcCCeEEEEeec-CCceeEEE
Q 030291 148 TEQEWGSLFVNAGFTHYKIAPI-FGIKSLIE 177 (180)
Q Consensus 148 ~~~~~~~~l~~aGf~~~~~~~~-~~~~~~~~ 177 (180)
+.+++.+.++++||+.+..... .|...+..
T Consensus 204 ~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~ 234 (238)
T COG2226 204 DQEELKQMIEKAGFEEVRYENLTFGIVALHR 234 (238)
T ss_pred CHHHHHHHHHhcCceEEeeEeeeeeeEEEEE
Confidence 7899999999999998874444 44444443
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-20 Score=138.06 Aligned_cols=161 Identities=19% Similarity=0.163 Sum_probs=116.3
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCch-hhccCCC---------CCCeeEEecCCcc-cCC--CccEEE
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPH-AVTDMPQ---------TDNLKYIEGDMFQ-FIP--PSDAFF 78 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~-~~~~a~~---------~~~~~~~~~d~~~-~~~--~~D~v~ 78 (180)
.+++.+|||+|||+|.++..+++.. +..+++++|+++ |++.+++ ..++++.++|+.+ +.+ +||+|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 4678899999999999999888874 567899999976 9888753 2478999999855 333 599999
Q ss_pred eccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhc-----c-ceeeEee-------cCCc
Q 030291 79 FKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLL-----F-DIFMNFN-------VGGK 145 (180)
Q Consensus 79 ~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~-------~~~~ 145 (180)
++.++|+++++. ++++++.++||| ||.+++.++..+.......+...... . ....... .-.+
T Consensus 151 ~~~~l~~~~d~~--~~l~ei~rvLkp---GG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~ 225 (261)
T PLN02233 151 MGYGLRNVVDRL--KAMQEMYRVLKP---GSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINE 225 (261)
T ss_pred EecccccCCCHH--HHHHHHHHHcCc---CcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHh
Confidence 999999999887 789999999999 99999999876554321111000000 0 0000000 0024
Q ss_pred ccCHHHHHHHHHHcCCeEEEEeecCC-ceeEEEE
Q 030291 146 ERTEQEWGSLFVNAGFTHYKIAPIFG-IKSLIEV 178 (180)
Q Consensus 146 ~~~~~~~~~~l~~aGf~~~~~~~~~~-~~~~~~~ 178 (180)
+.+.+++.++++++||+.++.....+ ...+..+
T Consensus 226 f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~ 259 (261)
T PLN02233 226 YLTGEELEKLALEAGFSSAKHYEISGGLMGNLVA 259 (261)
T ss_pred cCCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEE
Confidence 57999999999999999988877654 4444433
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-20 Score=137.22 Aligned_cols=154 Identities=18% Similarity=0.253 Sum_probs=109.8
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCccc--CCCccEEEec
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQF--IPPSDAFFFK 80 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~--~~~~D~v~~~ 80 (180)
.+++.+. ..++.+|||||||+|.++..+++.+|+.+++++|+++ |++.+++ .++++.++|+.+. .+.||+|+++
T Consensus 20 ~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~-~~~~~~~~d~~~~~~~~~fD~v~~~ 96 (255)
T PRK14103 20 DLLARVG--AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE-RGVDARTGDVRDWKPKPDTDVVVSN 96 (255)
T ss_pred HHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh-cCCcEEEcChhhCCCCCCceEEEEe
Confidence 3555665 6678999999999999999999998889999999976 8888865 4688999998542 3469999999
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhh---hccce-eeE-eecCCcccCHHHHHHH
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESK---LLFDI-FMN-FNVGGKERTEQEWGSL 155 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~-~~~~~~~~~~~~~~~~ 155 (180)
.++||++++. .++++++++|+| ||.+++.................. .+... ... ...+....+.+++.++
T Consensus 97 ~~l~~~~d~~--~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 171 (255)
T PRK14103 97 AALQWVPEHA--DLLVRWVDELAP---GSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAEL 171 (255)
T ss_pred hhhhhCCCHH--HHHHHHHHhCCC---CcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHH
Confidence 9999999887 789999999999 898888643211111111011100 00000 000 0112245689999999
Q ss_pred HHHcCCeEEE
Q 030291 156 FVNAGFTHYK 165 (180)
Q Consensus 156 l~~aGf~~~~ 165 (180)
|+++||++..
T Consensus 172 l~~aGf~v~~ 181 (255)
T PRK14103 172 LTDAGCKVDA 181 (255)
T ss_pred HHhCCCeEEE
Confidence 9999998543
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.5e-20 Score=134.42 Aligned_cols=154 Identities=21% Similarity=0.318 Sum_probs=115.2
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----CCCeeEEecCCcc-cCC--Ccc
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----TDNLKYIEGDMFQ-FIP--PSD 75 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----~~~~~~~~~d~~~-~~~--~~D 75 (180)
.+++.+. ++++.+|||||||+|..+..+++.+ +++++++|+++ +++.+++ ..++.+.++|+.+ +.+ .||
T Consensus 43 ~~l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD 119 (263)
T PTZ00098 43 KILSDIE--LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFD 119 (263)
T ss_pred HHHHhCC--CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeE
Confidence 4555666 7888999999999999999888765 67999999966 8777764 3579999999865 333 699
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHH
Q 030291 76 AFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSL 155 (180)
Q Consensus 76 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (180)
+|++..+++|++..+...++++++++|+| ||.+++.+........... ........ ......+.+++.++
T Consensus 120 ~V~s~~~l~h~~~~d~~~~l~~i~r~LkP---GG~lvi~d~~~~~~~~~~~--~~~~~~~~-----~~~~~~~~~~~~~~ 189 (263)
T PTZ00098 120 MIYSRDAILHLSYADKKKLFEKCYKWLKP---NGILLITDYCADKIENWDE--EFKAYIKK-----RKYTLIPIQEYGDL 189 (263)
T ss_pred EEEEhhhHHhCCHHHHHHHHHHHHHHcCC---CcEEEEEEeccccccCcHH--HHHHHHHh-----cCCCCCCHHHHHHH
Confidence 99999999898855556899999999999 9999999876543211110 11111100 11245688999999
Q ss_pred HHHcCCeEEEEeecC
Q 030291 156 FVNAGFTHYKIAPIF 170 (180)
Q Consensus 156 l~~aGf~~~~~~~~~ 170 (180)
++++||+.++..+..
T Consensus 190 l~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 190 IKSCNFQNVVAKDIS 204 (263)
T ss_pred HHHCCCCeeeEEeCc
Confidence 999999999887654
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.7e-20 Score=140.64 Aligned_cols=150 Identities=16% Similarity=0.230 Sum_probs=108.8
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcc-cC--CCccEEEeccc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQ-FI--PPSDAFFFKTV 82 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~-~~--~~~D~v~~~~~ 82 (180)
.++.+|||||||+|.++..+++.+ +++++++|+++ +++.+++ ..++++.++|+.+ +. ..||+|++..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 567899999999999999999987 78999999976 8877653 3579999999865 32 36999999999
Q ss_pred cccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCc-hhhhh-hhhccceeeEeecCCcccCHHHHHHHHHHcC
Q 030291 83 FHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDD-RELTE-SKLLFDIFMNFNVGGKERTEQEWGSLFVNAG 160 (180)
Q Consensus 83 l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 160 (180)
++|+++.. .+++++.++||| ||.+++.++........ ..+.. .....+............+.+++.++++++|
T Consensus 196 ~~h~~d~~--~~l~e~~rvLkp---GG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aG 270 (340)
T PLN02244 196 GEHMPDKR--KFVQELARVAAP---GGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLG 270 (340)
T ss_pred hhccCCHH--HHHHHHHHHcCC---CcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCC
Confidence 99999887 789999999999 99999988653221110 00000 0000000000001113458899999999999
Q ss_pred CeEEEEeec
Q 030291 161 FTHYKIAPI 169 (180)
Q Consensus 161 f~~~~~~~~ 169 (180)
|+.+++.+.
T Consensus 271 f~~v~~~d~ 279 (340)
T PLN02244 271 LQDIKTEDW 279 (340)
T ss_pred CCeeEeeeC
Confidence 999988765
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.9e-20 Score=133.38 Aligned_cols=166 Identities=17% Similarity=0.228 Sum_probs=120.4
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCch-hhccCCC------CCCeeEEecCCcc-cC--CC
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ-FI--PP 73 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~-~~--~~ 73 (180)
+++.+. .+++.+|||+|||+|.++..+++.. +..+++++|+++ +++.+++ ..++++.++|..+ +. ..
T Consensus 37 ~l~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 114 (231)
T TIGR02752 37 TMKRMN--VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNS 114 (231)
T ss_pred HHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCC
Confidence 445555 6678899999999999999998875 677999999965 8777653 3578999998855 22 36
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhc-c----cee-----------
Q 030291 74 SDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLL-F----DIF----------- 137 (180)
Q Consensus 74 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~----------- 137 (180)
||+|++..+++++++.. ++++++.++|+| ||.+++.+...+.... +...... + ...
T Consensus 115 fD~V~~~~~l~~~~~~~--~~l~~~~~~Lk~---gG~l~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~~ 186 (231)
T TIGR02752 115 FDYVTIGFGLRNVPDYM--QVLREMYRVVKP---GGKVVCLETSQPTIPG---FKQLYFFYFKYIMPLFGKLFAKSYKEY 186 (231)
T ss_pred ccEEEEecccccCCCHH--HHHHHHHHHcCc---CeEEEEEECCCCCChH---HHHHHHHHHcChhHHhhHHhcCCHHHH
Confidence 99999999999999887 789999999999 9999988765433221 1111000 0 000
Q ss_pred e-EeecCCcccCHHHHHHHHHHcCCeEEEEeecC-CceeEEEEeC
Q 030291 138 M-NFNVGGKERTEQEWGSLFVNAGFTHYKIAPIF-GIKSLIEVYP 180 (180)
Q Consensus 138 ~-~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~-~~~~~~~~~~ 180 (180)
. .......+.+.+++.++++++||+++++.... +..+.+.++|
T Consensus 187 ~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 187 SWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 0 00011245688999999999999999888775 6777777665
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-20 Score=137.10 Aligned_cols=153 Identities=17% Similarity=0.175 Sum_probs=112.3
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHC--CCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcc-cCCCccEEEeccc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAF--PGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQ-FIPPSDAFFFKTV 82 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~--~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~-~~~~~D~v~~~~~ 82 (180)
++..+|||||||+|..+..+++.+ |+.+++++|+++ |++.+++ ..++++.++|+.+ +.+.+|+|+++.+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 567899999999999999998874 689999999965 9888864 2478999999965 4457999999999
Q ss_pred cccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchh-hhhhhhcc-ceeeEe-----------ecCCcccCH
Q 030291 83 FHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRE-LTESKLLF-DIFMNF-----------NVGGKERTE 149 (180)
Q Consensus 83 l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~-----------~~~~~~~~~ 149 (180)
+||+++.+...+++++.++|+| ||.+++.+........... +.+....+ ...... .......+.
T Consensus 132 l~~~~~~~~~~~l~~i~~~Lkp---gG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~ 208 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNP---NGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDSI 208 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCC---CeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCH
Confidence 9999887777999999999999 9999999876544322111 11110000 000000 011245799
Q ss_pred HHHHHHHHHcCCeEEEEeec
Q 030291 150 QEWGSLFVNAGFTHYKIAPI 169 (180)
Q Consensus 150 ~~~~~~l~~aGf~~~~~~~~ 169 (180)
+++.++++++||+.++....
T Consensus 209 ~~~~~~l~~aGF~~~~~~~~ 228 (239)
T TIGR00740 209 ETHKARLKNVGFSHVELWFQ 228 (239)
T ss_pred HHHHHHHHHcCCchHHHHHH
Confidence 99999999999997665433
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.7e-20 Score=136.06 Aligned_cols=160 Identities=16% Similarity=0.173 Sum_probs=108.9
Q ss_pred ccccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccCCCc
Q 030291 3 TLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFIPPS 74 (180)
Q Consensus 3 ~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~~~~ 74 (180)
+.+++++. ++++.+|||||||.|.++..+++.+ +++++++++|+ ..+.+++ ..++++...|+.+..+.|
T Consensus 52 ~~~~~~~~--l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~f 128 (273)
T PF02353_consen 52 DLLCEKLG--LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKF 128 (273)
T ss_dssp HHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-
T ss_pred HHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCC
Confidence 45677888 9999999999999999999999998 89999999976 6666643 467999999997655589
Q ss_pred cEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHH
Q 030291 75 DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGS 154 (180)
Q Consensus 75 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (180)
|.|++..+++|+.......+++++.++|+| ||.+++.............-........ .....++...+.+++..
T Consensus 129 D~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkp---gG~~~lq~i~~~~~~~~~~~~~~~~~i~--kyiFPgg~lps~~~~~~ 203 (273)
T PF02353_consen 129 DRIVSIEMFEHVGRKNYPAFFRKISRLLKP---GGRLVLQTITHRDPPYHAERRSSSDFIR--KYIFPGGYLPSLSEILR 203 (273)
T ss_dssp SEEEEESEGGGTCGGGHHHHHHHHHHHSET---TEEEEEEEEEE--HHHHHCTTCCCHHHH--HHTSTTS---BHHHHHH
T ss_pred CEEEEEechhhcChhHHHHHHHHHHHhcCC---CcEEEEEecccccccchhhcCCCceEEE--EeeCCCCCCCCHHHHHH
Confidence 999999999999888778999999999999 8998887766554321110000000111 11234566778899999
Q ss_pred HHHHcCCeEEEEeecC
Q 030291 155 LFVNAGFTHYKIAPIF 170 (180)
Q Consensus 155 ~l~~aGf~~~~~~~~~ 170 (180)
.++++||++.+....+
T Consensus 204 ~~~~~~l~v~~~~~~~ 219 (273)
T PF02353_consen 204 AAEDAGLEVEDVENLG 219 (273)
T ss_dssp HHHHTT-EEEEEEE-H
T ss_pred HHhcCCEEEEEEEEcC
Confidence 9999999998887653
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.9e-20 Score=134.49 Aligned_cols=157 Identities=20% Similarity=0.261 Sum_probs=127.0
Q ss_pred ccccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccCCCc
Q 030291 3 TLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFIPPS 74 (180)
Q Consensus 3 ~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~~~~ 74 (180)
+.+++.+. ++++.++||||||.|.++..+++.+ +++++|+++|+ +...+++ ..++++...|..+..+.|
T Consensus 62 ~~~~~kl~--L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~f 138 (283)
T COG2230 62 DLILEKLG--LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPF 138 (283)
T ss_pred HHHHHhcC--CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccccc
Confidence 45667777 8999999999999999999999999 89999999976 7777764 458999999997766679
Q ss_pred cEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHH
Q 030291 75 DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGS 154 (180)
Q Consensus 75 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (180)
|-|++..+++|+.......+++++.+.|+| ||.+++.....+...... ...+. ..+...++...+..++..
T Consensus 139 DrIvSvgmfEhvg~~~~~~ff~~~~~~L~~---~G~~llh~I~~~~~~~~~----~~~~i--~~yiFPgG~lPs~~~i~~ 209 (283)
T COG2230 139 DRIVSVGMFEHVGKENYDDFFKKVYALLKP---GGRMLLHSITGPDQEFRR----FPDFI--DKYIFPGGELPSISEILE 209 (283)
T ss_pred ceeeehhhHHHhCcccHHHHHHHHHhhcCC---CceEEEEEecCCCccccc----chHHH--HHhCCCCCcCCCHHHHHH
Confidence 999999999999998888999999999999 999999988776654310 00011 122335667778899999
Q ss_pred HHHHcCCeEEEEeecCC
Q 030291 155 LFVNAGFTHYKIAPIFG 171 (180)
Q Consensus 155 ~l~~aGf~~~~~~~~~~ 171 (180)
..+++||.+.+....+.
T Consensus 210 ~~~~~~~~v~~~~~~~~ 226 (283)
T COG2230 210 LASEAGFVVLDVESLRP 226 (283)
T ss_pred HHHhcCcEEehHhhhcH
Confidence 99999999888766543
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.4e-20 Score=135.77 Aligned_cols=165 Identities=33% Similarity=0.565 Sum_probs=138.0
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCCC-CCeeEEecCCcccCCCccEEEeccccccCChHHH
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQT-DNLKYIEGDMFQFIPPSDAFFFKTVFHFFDDEDC 91 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~-~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~~~~ 91 (180)
+......+|+|+|.|..+..++..+|....+-+|++..++.+... +.++.+-+|+++..|.-|+|++.+++||+.|.++
T Consensus 175 f~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P~~daI~mkWiLhdwtDedc 254 (342)
T KOG3178|consen 175 FKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTPKGDAIWMKWILHDWTDEDC 254 (342)
T ss_pred cccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccccccCCCcCeEEEEeecccCChHHH
Confidence 456788999999999999999999999888888888888888775 7899999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCcEEEEEEeeeCC-CCCchhhhhhhhccceeeEee-cCCcccCHHHHHHHHHHcCCeEEEEeec
Q 030291 92 LKLLKKCREAIASNGERGKVLIIDIVIDE-KEDDRELTESKLLFDIFMNFN-VGGKERTEQEWGSLFVNAGFTHYKIAPI 169 (180)
Q Consensus 92 ~~~l~~~~~~L~p~~~~G~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 169 (180)
.++|++|+..|+| +|++++.|.+.+. ...+..........+..+... .+++.++.++++.++.++||.+..+.-.
T Consensus 255 vkiLknC~~sL~~---~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~~~~~~~ 331 (342)
T KOG3178|consen 255 VKILKNCKKSLPP---GGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPVCMVALT 331 (342)
T ss_pred HHHHHHHHHhCCC---CCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhhcCceeEEEec
Confidence 9999999999999 9999999997765 322211122333344433332 4478899999999999999999999999
Q ss_pred CCceeEEEEeC
Q 030291 170 FGIKSLIEVYP 180 (180)
Q Consensus 170 ~~~~~~~~~~~ 180 (180)
....++|+++|
T Consensus 332 ~~~~~~Ie~~k 342 (342)
T KOG3178|consen 332 AYSYSVIEFHK 342 (342)
T ss_pred cCccchheeCC
Confidence 99999998875
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.7e-20 Score=133.63 Aligned_cols=152 Identities=16% Similarity=0.169 Sum_probs=111.8
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHH--CCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcc-cCCCccEEEecc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEA--FPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQ-FIPPSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~--~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~-~~~~~D~v~~~~ 81 (180)
.+++.+|||||||+|..+..+++. .|+.+++++|+++ |++.+++ ..+++++++|+.+ +.+.+|+|+++.
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~ 133 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF 133 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhh
Confidence 356789999999999999988874 5789999999966 9998875 2479999999865 445799999999
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchh-hhhhhhcc-ceeeEee-----------cCCcccC
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRE-LTESKLLF-DIFMNFN-----------VGGKERT 148 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~-----------~~~~~~~ 148 (180)
++||+++.+...++++++++|+| ||.+++.+........... +...+..+ ....++. ......+
T Consensus 134 ~l~~l~~~~~~~~l~~i~~~Lkp---GG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~ 210 (247)
T PRK15451 134 TLQFLEPSERQALLDKIYQGLNP---GGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDS 210 (247)
T ss_pred HHHhCCHHHHHHHHHHHHHhcCC---CCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCC
Confidence 99999987777999999999999 9999999866544332221 11111000 0001100 0113458
Q ss_pred HHHHHHHHHHcCCeEEEEe
Q 030291 149 EQEWGSLFVNAGFTHYKIA 167 (180)
Q Consensus 149 ~~~~~~~l~~aGf~~~~~~ 167 (180)
.++..++|+++||+.++..
T Consensus 211 ~~~~~~~L~~aGF~~v~~~ 229 (247)
T PRK15451 211 VETHKARLHKAGFEHSELW 229 (247)
T ss_pred HHHHHHHHHHcCchhHHHH
Confidence 8999999999999876554
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.2e-20 Score=125.89 Aligned_cols=137 Identities=19% Similarity=0.216 Sum_probs=97.7
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEec---CCcccCCCccEEEeccccccCCh
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEG---DMFQFIPPSDAFFFKTVFHFFDD 88 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~---d~~~~~~~~D~v~~~~~l~~~~~ 88 (180)
..+..+|||||||.|.++..+.+. +.+++++|+++ +++. . +...... +...+...||+|++..+++|+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~g~D~~~~~~~~-~---~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d 93 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR--GFEVTGVDISPQMIEK-R---NVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPD 93 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT--TSEEEEEESSHHHHHH-T---TSEEEEEECHTHHCHSSSEEEEEEESSGGGSSH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHhh-h---hhhhhhhhhhhhhccccchhhHhhHHHHhhccc
Confidence 467889999999999999999776 44899999965 7666 1 2222222 22123457999999999999998
Q ss_pred HHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEEE
Q 030291 89 EDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYK 165 (180)
Q Consensus 89 ~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 165 (180)
+. ++|+++.++|+| ||.+++.++........ ....+...... ..+...++.++|.++++++||++++
T Consensus 94 ~~--~~l~~l~~~Lkp---gG~l~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 94 PE--EFLKELSRLLKP---GGYLVISDPNRDDPSPR--SFLKWRYDRPY---GGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp HH--HHHHHHHHCEEE---EEEEEEEEEBTTSHHHH--HHHHCCGTCHH---TTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred HH--HHHHHHHHhcCC---CCEEEEEEcCCcchhhh--HHHhcCCcCcc---CceeccCCHHHHHHHHHHCCCEEEE
Confidence 77 889999999999 89999988765321100 00111111100 0234678999999999999999886
|
... |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-19 Score=135.54 Aligned_cols=146 Identities=14% Similarity=0.120 Sum_probs=105.0
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcc-c--CCCccEEEecccc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQ-F--IPPSDAFFFKTVF 83 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~-~--~~~~D~v~~~~~l 83 (180)
++.+|||||||+|.++..+++. +.+++++|++. +++.++. ..++++.++|+.+ + ...||+|++..++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 4569999999999999988864 77899999965 8888763 2478999998744 2 2369999999999
Q ss_pred ccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccce-eeEeecCCcccCHHHHHHHHHHcCCe
Q 030291 84 HFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDI-FMNFNVGGKERTEQEWGSLFVNAGFT 162 (180)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~aGf~ 162 (180)
+|++++. .+++++.++||| ||.+++.+.+................... ....+...++++++++.++++++||+
T Consensus 209 eHv~d~~--~~L~~l~r~LkP---GG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~ 283 (322)
T PLN02396 209 EHVANPA--EFCKSLSALTIP---NGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVD 283 (322)
T ss_pred HhcCCHH--HHHHHHHHHcCC---CcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCe
Confidence 9999998 889999999999 99999987653211000000000000000 00011112468999999999999999
Q ss_pred EEEEe
Q 030291 163 HYKIA 167 (180)
Q Consensus 163 ~~~~~ 167 (180)
++++.
T Consensus 284 i~~~~ 288 (322)
T PLN02396 284 VKEMA 288 (322)
T ss_pred EEEEe
Confidence 98884
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-18 Score=130.45 Aligned_cols=146 Identities=14% Similarity=0.116 Sum_probs=104.8
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCC-------CCCCeeEEecCCcc--cCCCccEEEeccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMP-------QTDNLKYIEGDMFQ--FIPPSDAFFFKTV 82 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~-------~~~~~~~~~~d~~~--~~~~~D~v~~~~~ 82 (180)
..++++|||||||+|.++..++...+ ..++++|++. |+.+++ ...++.+...++.+ ....||+|++.++
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~V~s~gv 197 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDTVFSMGV 197 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCEEEEcch
Confidence 45578999999999999998888754 3799999976 765432 14577788887743 2236999999999
Q ss_pred cccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCe
Q 030291 83 FHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFT 162 (180)
Q Consensus 83 l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 162 (180)
++|.+++. .+|++++++|+| ||.+++.+.......... +........ ........+.+++.+.++++||+
T Consensus 198 L~H~~dp~--~~L~el~r~Lkp---GG~Lvletl~i~g~~~~~-l~p~~ry~k----~~nv~flpS~~~L~~~L~~aGF~ 267 (314)
T TIGR00452 198 LYHRKSPL--EHLKQLKHQLVI---KGELVLETLVIDGDLNTV-LVPKDRYAK----MKNVYFIPSVSALKNWLEKVGFE 267 (314)
T ss_pred hhccCCHH--HHHHHHHHhcCC---CCEEEEEEEEecCccccc-cCchHHHHh----ccccccCCCHHHHHHHHHHCCCe
Confidence 99999987 789999999999 999999876554332111 000000000 00111345889999999999999
Q ss_pred EEEEeec
Q 030291 163 HYKIAPI 169 (180)
Q Consensus 163 ~~~~~~~ 169 (180)
.+++...
T Consensus 268 ~V~i~~~ 274 (314)
T TIGR00452 268 NFRILDV 274 (314)
T ss_pred EEEEEec
Confidence 9987754
|
Known examples to date are restricted to the proteobacteria. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-18 Score=138.14 Aligned_cols=150 Identities=19% Similarity=0.267 Sum_probs=114.0
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCcc-cCC--Cc
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQ-FIP--PS 74 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~-~~~--~~ 74 (180)
.+++.+. ++++.+|||||||+|..+..+++.. +++++++|+++ ++..+++ ..++++.++|+.+ +.+ .|
T Consensus 257 ~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~f 333 (475)
T PLN02336 257 EFVDKLD--LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSF 333 (475)
T ss_pred HHHHhcC--CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCE
Confidence 3455555 6678899999999999999888876 77999999976 8877754 3578999999865 333 59
Q ss_pred cEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHH
Q 030291 75 DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGS 154 (180)
Q Consensus 75 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (180)
|+|++..+++|++++. .++++++++|+| ||.+++.+............ ..... ..+....+.+++.+
T Consensus 334 D~I~s~~~l~h~~d~~--~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~~~~~---~~~~~-----~~g~~~~~~~~~~~ 400 (475)
T PLN02336 334 DVIYSRDTILHIQDKP--ALFRSFFKWLKP---GGKVLISDYCRSPGTPSPEF---AEYIK-----QRGYDLHDVQAYGQ 400 (475)
T ss_pred EEEEECCcccccCCHH--HHHHHHHHHcCC---CeEEEEEEeccCCCCCcHHH---HHHHH-----hcCCCCCCHHHHHH
Confidence 9999999999999987 789999999999 99999988765432221111 11111 11235678899999
Q ss_pred HHHHcCCeEEEEeec
Q 030291 155 LFVNAGFTHYKIAPI 169 (180)
Q Consensus 155 ~l~~aGf~~~~~~~~ 169 (180)
+++++||+++.+.+.
T Consensus 401 ~l~~aGF~~i~~~d~ 415 (475)
T PLN02336 401 MLKDAGFDDVIAEDR 415 (475)
T ss_pred HHHHCCCeeeeeecc
Confidence 999999999876543
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.7e-19 Score=131.66 Aligned_cols=153 Identities=15% Similarity=0.173 Sum_probs=108.0
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCccc----CCCccEEEecc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQF----IPPSDAFFFKT 81 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~----~~~~D~v~~~~ 81 (180)
..+.+|||+|||+|.++..+++. +.+++++|+++ |++.+++ ..+++++++|+.+. ...||+|++..
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 45679999999999999999987 56899999965 8888864 25788999988541 23699999999
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhh-hh---hccc-eeeEeecCCcccCHHHHHHHH
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTE-SK---LLFD-IFMNFNVGGKERTEQEWGSLF 156 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~-~~---~~~~-~~~~~~~~~~~~~~~~~~~~l 156 (180)
+++|++++. .+++++.++|+| ||.+++...+.........+.. .. .... ............+++++.+++
T Consensus 121 vl~~~~~~~--~~l~~~~~~Lkp---gG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l 195 (255)
T PRK11036 121 VLEWVADPK--SVLQTLWSVLRP---GGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWL 195 (255)
T ss_pred HHHhhCCHH--HHHHHHHHHcCC---CeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHH
Confidence 999999887 789999999999 9999887654322100000000 00 0000 000011112346889999999
Q ss_pred HHcCCeEEEEeecCCce
Q 030291 157 VNAGFTHYKIAPIFGIK 173 (180)
Q Consensus 157 ~~aGf~~~~~~~~~~~~ 173 (180)
+++||++++..-...++
T Consensus 196 ~~aGf~~~~~~gi~~~~ 212 (255)
T PRK11036 196 EEAGWQIMGKTGVRVFH 212 (255)
T ss_pred HHCCCeEeeeeeEEEEe
Confidence 99999998776554443
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-18 Score=130.63 Aligned_cols=145 Identities=17% Similarity=0.166 Sum_probs=105.0
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCC-------CCCCeeEEecCCcc-c-CCCccEEEecccc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMP-------QTDNLKYIEGDMFQ-F-IPPSDAFFFKTVF 83 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~-------~~~~~~~~~~d~~~-~-~~~~D~v~~~~~l 83 (180)
..+.+|||||||+|.++..+++..+. +++++|++. ++.+++ ...++.+..+|+.+ + ...||+|++..++
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s~~vl 199 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVL 199 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEECChh
Confidence 35689999999999999999998644 699999976 665432 13579999998844 2 2369999999999
Q ss_pred ccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeE
Q 030291 84 HFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTH 163 (180)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 163 (180)
||..++. .+++++++.|+| ||.+++.+.......... +........ ........+.+++.++++++||+.
T Consensus 200 ~H~~dp~--~~L~~l~~~Lkp---GG~lvl~~~~i~~~~~~~-l~p~~~y~~----~~~~~~lps~~~l~~~L~~aGF~~ 269 (322)
T PRK15068 200 YHRRSPL--DHLKQLKDQLVP---GGELVLETLVIDGDENTV-LVPGDRYAK----MRNVYFIPSVPALKNWLERAGFKD 269 (322)
T ss_pred hccCCHH--HHHHHHHHhcCC---CcEEEEEEEEecCCCccc-cCchhHHhc----CccceeCCCHHHHHHHHHHcCCce
Confidence 9999887 789999999999 999988766544332211 000000000 000112358899999999999999
Q ss_pred EEEeec
Q 030291 164 YKIAPI 169 (180)
Q Consensus 164 ~~~~~~ 169 (180)
+++...
T Consensus 270 i~~~~~ 275 (322)
T PRK15068 270 VRIVDV 275 (322)
T ss_pred EEEEeC
Confidence 988755
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.6e-18 Score=122.89 Aligned_cols=136 Identities=14% Similarity=0.190 Sum_probs=105.9
Q ss_pred CeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcc-cC-CCccEEEeccccccC
Q 030291 17 RSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQ-FI-PPSDAFFFKTVFHFF 86 (180)
Q Consensus 17 ~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~-~~-~~~D~v~~~~~l~~~ 86 (180)
++|||||||+|..+..+++.+++++++++|+++ ++..+++ ..++++...|+.. +. +.||+|++..+++|+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 479999999999999999998888999999966 7776654 4578999999844 22 369999999999999
Q ss_pred ChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEEEE
Q 030291 87 DDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKI 166 (180)
Q Consensus 87 ~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 166 (180)
++.. .+++++.++|+| ||.+++.+......... . .........+.++|.++++++||++++.
T Consensus 81 ~~~~--~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~----------~---~~~~~~~~~s~~~~~~~l~~~Gf~~~~~ 142 (224)
T smart00828 81 KDKM--DLFSNISRHLKD---GGHLVLADFIANLLSAI----------E---HEETTSYLVTREEWAELLARNNLRVVEG 142 (224)
T ss_pred CCHH--HHHHHHHHHcCC---CCEEEEEEcccccCccc----------c---ccccccccCCHHHHHHHHHHCCCeEEEe
Confidence 8876 889999999999 99999988643221100 0 0001112468899999999999999988
Q ss_pred eecC
Q 030291 167 APIF 170 (180)
Q Consensus 167 ~~~~ 170 (180)
....
T Consensus 143 ~~~~ 146 (224)
T smart00828 143 VDAS 146 (224)
T ss_pred EECc
Confidence 7653
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.78 E-value=5e-18 Score=128.30 Aligned_cols=141 Identities=25% Similarity=0.295 Sum_probs=108.2
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC---CCCeeEEecCCcc-cC--CCccEEEeccccccC
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ---TDNLKYIEGDMFQ-FI--PPSDAFFFKTVFHFF 86 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~---~~~~~~~~~d~~~-~~--~~~D~v~~~~~l~~~ 86 (180)
++..+|||||||+|.++..+++..+..+++++|.++ |++.+++ ..++++..+|+.+ +. ..||+|+++.+++|+
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence 356799999999999999998887778999999966 8888765 3578889999854 22 359999999999999
Q ss_pred ChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEEEE
Q 030291 87 DDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKI 166 (180)
Q Consensus 87 ~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 166 (180)
++.. .+++++.++|+| ||.+++.+...+..+.. . ...+.+. ...+.+++.++++++||+.+++
T Consensus 192 ~d~~--~~L~e~~rvLkP---GG~LvIi~~~~p~~~~~----r--~~~~~~~------~~~t~eEl~~lL~~aGF~~V~i 254 (340)
T PLN02490 192 PDPQ--RGIKEAYRVLKI---GGKACLIGPVHPTFWLS----R--FFADVWM------LFPKEEEYIEWFTKAGFKDVKL 254 (340)
T ss_pred CCHH--HHHHHHHHhcCC---CcEEEEEEecCcchhHH----H--Hhhhhhc------cCCCHHHHHHHHHHCCCeEEEE
Confidence 9987 679999999999 99998876543221100 0 0111111 2357899999999999999988
Q ss_pred eecCC
Q 030291 167 APIFG 171 (180)
Q Consensus 167 ~~~~~ 171 (180)
.+..+
T Consensus 255 ~~i~~ 259 (340)
T PLN02490 255 KRIGP 259 (340)
T ss_pred EEcCh
Confidence 77644
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3e-19 Score=126.36 Aligned_cols=146 Identities=14% Similarity=0.136 Sum_probs=106.7
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCcc--cC-CCccEEEecccccc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQ--FI-PPSDAFFFKTVFHF 85 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~--~~-~~~D~v~~~~~l~~ 85 (180)
.+.+|||||||.|.++..+++. +++|+++|+++ +++.|+. .-.+++.+....+ .. .+||+|+|..+++|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 6789999999999999999999 68899999976 8888885 2334466665543 22 47999999999999
Q ss_pred CChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhcc-ceeeEeecCCcccCHHHHHHHHHHcCCeEE
Q 030291 86 FDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLF-DIFMNFNVGGKERTEQEWGSLFVNAGFTHY 164 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 164 (180)
+++++ .+++.|.+++|| ||.+++++.+.........+....... .+...++...++..++|+...+.++|+.+.
T Consensus 137 v~dp~--~~~~~c~~lvkP---~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~ 211 (243)
T COG2227 137 VPDPE--SFLRACAKLVKP---GGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKII 211 (243)
T ss_pred cCCHH--HHHHHHHHHcCC---CcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEE
Confidence 99999 789999999999 999999888744332211111100011 111122222356788999999999999887
Q ss_pred EEe
Q 030291 165 KIA 167 (180)
Q Consensus 165 ~~~ 167 (180)
+..
T Consensus 212 ~~~ 214 (243)
T COG2227 212 DRK 214 (243)
T ss_pred eec
Confidence 764
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.2e-18 Score=110.65 Aligned_cols=98 Identities=22% Similarity=0.512 Sum_probs=81.7
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCC-cc--cCCCccEEEecc-c
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDM-FQ--FIPPSDAFFFKT-V 82 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~-~~--~~~~~D~v~~~~-~ 82 (180)
++.+|||||||+|.++..+++.+++.+++++|+++ +++.+++ ..+++++++|+ .. ..+.||+|++.. +
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 46789999999999999999988899999999965 8888864 58999999999 32 344699999999 5
Q ss_pred cccCCh-HHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 83 FHFFDD-EDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 83 l~~~~~-~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
++++.+ ++..++++++++.|+| ||.+++.+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~p---gG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKP---GGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCC---CcEEEEEE
Confidence 664443 4566899999999999 88888764
|
... |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.6e-18 Score=124.23 Aligned_cols=153 Identities=14% Similarity=0.186 Sum_probs=107.1
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-CCCeeEEecCCccc--CCCccEEEe
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-TDNLKYIEGDMFQF--IPPSDAFFF 79 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-~~~~~~~~~d~~~~--~~~~D~v~~ 79 (180)
.++..+. ..++.+|||||||+|.++..+++.+|+.+++++|+++ +++.+++ ..++++..+|+.+. .+.||+|++
T Consensus 22 ~ll~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 99 (258)
T PRK01683 22 DLLARVP--LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLIFA 99 (258)
T ss_pred HHHhhCC--CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEEEE
Confidence 4555555 6778999999999999999999998889999999976 8888876 56788999998542 236999999
Q ss_pred ccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhh---hccceeeEee-cCCcccCHHHHHHH
Q 030291 80 KTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESK---LLFDIFMNFN-VGGKERTEQEWGSL 155 (180)
Q Consensus 80 ~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~ 155 (180)
+.++||+++.. .+++++.++|+| ||.+++.............+.+.. .+........ ......+..++.+.
T Consensus 100 ~~~l~~~~d~~--~~l~~~~~~Lkp---gG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 174 (258)
T PRK01683 100 NASLQWLPDHL--ELFPRLVSLLAP---GGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAYYDA 174 (258)
T ss_pred ccChhhCCCHH--HHHHHHHHhcCC---CcEEEEECCCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHHHHH
Confidence 99999999887 789999999999 888877532111111100000000 0000000000 11234577889999
Q ss_pred HHHcCCeE
Q 030291 156 FVNAGFTH 163 (180)
Q Consensus 156 l~~aGf~~ 163 (180)
+.++|+.+
T Consensus 175 l~~~g~~v 182 (258)
T PRK01683 175 LAPAACRV 182 (258)
T ss_pred HHhCCCce
Confidence 99999874
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.4e-18 Score=119.14 Aligned_cols=139 Identities=16% Similarity=0.178 Sum_probs=102.9
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcc-cC-CCcc
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ-FI-PPSD 75 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~-~~-~~~D 75 (180)
+++.+. ..++.+|||+|||+|..+..+++. +.+++++|+++ +++.+++ ..++++.+.|+.+ +. ..||
T Consensus 22 l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD 97 (197)
T PRK11207 22 VLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEYD 97 (197)
T ss_pred HHHhcc--cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCcC
Confidence 344444 456789999999999999999987 56899999976 8887764 2457888888854 22 3599
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHH
Q 030291 76 AFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSL 155 (180)
Q Consensus 76 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (180)
+|+++.++||+++.....+++++.++|+| ||.+++........... .......++.+++.+.
T Consensus 98 ~I~~~~~~~~~~~~~~~~~l~~i~~~Lkp---gG~~~~~~~~~~~~~~~---------------~~~~~~~~~~~el~~~ 159 (197)
T PRK11207 98 FILSTVVLMFLEAKTIPGLIANMQRCTKP---GGYNLIVAAMDTADYPC---------------TVGFPFAFKEGELRRY 159 (197)
T ss_pred EEEEecchhhCCHHHHHHHHHHHHHHcCC---CcEEEEEEEecCCCCCC---------------CCCCCCccCHHHHHHH
Confidence 99999999999877778999999999999 89877665443322100 0001133578889888
Q ss_pred HHHcCCeEEEEe
Q 030291 156 FVNAGFTHYKIA 167 (180)
Q Consensus 156 l~~aGf~~~~~~ 167 (180)
++ ||++++..
T Consensus 160 ~~--~~~~~~~~ 169 (197)
T PRK11207 160 YE--GWEMVKYN 169 (197)
T ss_pred hC--CCeEEEee
Confidence 87 89887763
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-17 Score=120.37 Aligned_cols=163 Identities=17% Similarity=0.223 Sum_probs=115.5
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCC-CCeEEEeeCch-hhccCCC-------CCCeeEEecCCccc---CCCccEEEec
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFP-GIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQF---IPPSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~---~~~~D~v~~~ 80 (180)
..+..+|||+|||+|.++..+++.++ ..+++++|+++ +++.+++ ..++++...|+.+. .+.||+|+++
T Consensus 49 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~ 128 (239)
T PRK00216 49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIA 128 (239)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEe
Confidence 34568999999999999999999876 68999999965 7776654 25688898888552 2369999999
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhh-h-cc----ceeeEee--------cCCcc
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESK-L-LF----DIFMNFN--------VGGKE 146 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~-~-~~----~~~~~~~--------~~~~~ 146 (180)
.+++++++.. .+++++.++|+| ||.+++.+...+............ . .. ....... .-...
T Consensus 129 ~~l~~~~~~~--~~l~~~~~~L~~---gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (239)
T PRK00216 129 FGLRNVPDID--KALREMYRVLKP---GGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAF 203 (239)
T ss_pred cccccCCCHH--HHHHHHHHhccC---CcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhC
Confidence 9999999887 779999999999 999999887654332110000000 0 00 0000000 00134
Q ss_pred cCHHHHHHHHHHcCCeEEEEeec-CCceeEEEEeC
Q 030291 147 RTEQEWGSLFVNAGFTHYKIAPI-FGIKSLIEVYP 180 (180)
Q Consensus 147 ~~~~~~~~~l~~aGf~~~~~~~~-~~~~~~~~~~~ 180 (180)
++.++|.++++++||+.+++... .++..++.+++
T Consensus 204 ~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 204 PDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred CCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 57899999999999999999886 46666666553
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-17 Score=121.84 Aligned_cols=145 Identities=17% Similarity=0.213 Sum_probs=104.7
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-CCCeeEEecCCcc-cC--CCccEEE
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-TDNLKYIEGDMFQ-FI--PPSDAFF 78 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-~~~~~~~~~d~~~-~~--~~~D~v~ 78 (180)
.+++.+. ..+..+|||+|||+|.++..+.+. +.+++++|+++ +++.+++ .....+.++|+.. +. ..||+|+
T Consensus 33 ~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~ 108 (251)
T PRK10258 33 ALLAMLP--QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAW 108 (251)
T ss_pred HHHHhcC--ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEE
Confidence 3444554 345789999999999999888775 67899999966 8888876 3345788888854 22 2599999
Q ss_pred eccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHH
Q 030291 79 FKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVN 158 (180)
Q Consensus 79 ~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 158 (180)
++.++++.++.. .+++++.++|+| ||.++++.+...... ++...+...+ .......+.+.+++.+++++
T Consensus 109 s~~~l~~~~d~~--~~l~~~~~~Lk~---gG~l~~~~~~~~~~~---el~~~~~~~~---~~~~~~~~~~~~~l~~~l~~ 177 (251)
T PRK10258 109 SNLAVQWCGNLS--TALRELYRVVRP---GGVVAFTTLVQGSLP---ELHQAWQAVD---ERPHANRFLPPDAIEQALNG 177 (251)
T ss_pred ECchhhhcCCHH--HHHHHHHHHcCC---CeEEEEEeCCCCchH---HHHHHHHHhc---cCCccccCCCHHHHHHHHHh
Confidence 999999998887 789999999999 899888765433211 1212211111 11123356789999999998
Q ss_pred cCCeE
Q 030291 159 AGFTH 163 (180)
Q Consensus 159 aGf~~ 163 (180)
.|++.
T Consensus 178 ~~~~~ 182 (251)
T PRK10258 178 WRYQH 182 (251)
T ss_pred CCcee
Confidence 88864
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.2e-18 Score=116.56 Aligned_cols=156 Identities=17% Similarity=0.197 Sum_probs=113.2
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-CCCeeEEecCCcc--cCCCccEEEe
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-TDNLKYIEGDMFQ--FIPPSDAFFF 79 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-~~~~~~~~~d~~~--~~~~~D~v~~ 79 (180)
.++..++ .....+|.|+|||+|..+..|.+++|.+.++|+|.|. |++.|++ ..+++|..+|+.+ +.+..|++++
T Consensus 21 dLla~Vp--~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dllfa 98 (257)
T COG4106 21 DLLARVP--LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLLFA 98 (257)
T ss_pred HHHhhCC--ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchhhh
Confidence 4666777 7889999999999999999999999999999999966 9999976 7899999999966 3447999999
Q ss_pred ccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhcc----ceeeEeecCCcccCHHHHHHH
Q 030291 80 KTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLF----DIFMNFNVGGKERTEQEWGSL 155 (180)
Q Consensus 80 ~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 155 (180)
+.+|+++++.. .+|.++...|.| ||.+.+.-+..-+.+.+..+.+..... .+...........++..+-++
T Consensus 99 NAvlqWlpdH~--~ll~rL~~~L~P---gg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~l 173 (257)
T COG4106 99 NAVLQWLPDHP--ELLPRLVSQLAP---GGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYEL 173 (257)
T ss_pred hhhhhhccccH--HHHHHHHHhhCC---CceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHH
Confidence 99999999998 789999999999 777776543322222222222222110 010100112234577788888
Q ss_pred HHHcCCeEEEEe
Q 030291 156 FVNAGFTHYKIA 167 (180)
Q Consensus 156 l~~aGf~~~~~~ 167 (180)
|...+-+ ++++
T Consensus 174 La~~~~r-vDiW 184 (257)
T COG4106 174 LAPLACR-VDIW 184 (257)
T ss_pred hCcccce-eeee
Confidence 8777654 3443
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.1e-17 Score=119.64 Aligned_cols=145 Identities=17% Similarity=0.285 Sum_probs=107.5
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHH-CCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcc-cC--CCccEEEecc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEA-FPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ-FI--PPSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~-~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~-~~--~~~D~v~~~~ 81 (180)
++++.+|||||||+|..+..+++. .+..+++++|+++ +++.+++ ..++++..+|+.+ +. ..||+|+++.
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 567899999999999988777665 4556899999965 8888875 3588899998854 22 2699999999
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCC
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGF 161 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 161 (180)
++++.++.. ++++++.++|+| ||.+++.+.......... . ...... .........+.+++.++++++||
T Consensus 155 v~~~~~d~~--~~l~~~~r~Lkp---GG~l~i~~~~~~~~~~~~-~---~~~~~~--~~~~~~~~~~~~e~~~~l~~aGf 223 (272)
T PRK11873 155 VINLSPDKE--RVFKEAFRVLKP---GGRFAISDVVLRGELPEE-I---RNDAEL--YAGCVAGALQEEEYLAMLAEAGF 223 (272)
T ss_pred cccCCCCHH--HHHHHHHHHcCC---CcEEEEEEeeccCCCCHH-H---HHhHHH--HhccccCCCCHHHHHHHHHHCCC
Confidence 999998877 779999999999 999999987654432211 1 111111 11112234678999999999999
Q ss_pred eEEEEee
Q 030291 162 THYKIAP 168 (180)
Q Consensus 162 ~~~~~~~ 168 (180)
..+++..
T Consensus 224 ~~v~i~~ 230 (272)
T PRK11873 224 VDITIQP 230 (272)
T ss_pred CceEEEe
Confidence 9887644
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.3e-17 Score=124.34 Aligned_cols=153 Identities=11% Similarity=0.119 Sum_probs=111.9
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC---CCCeeEEecCCcccCCCccEEEec
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ---TDNLKYIEGDMFQFIPPSDAFFFK 80 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~---~~~~~~~~~d~~~~~~~~D~v~~~ 80 (180)
+++.+. ++++.+|||||||+|.++..+++.+ +++++++|+++ +++.+++ ..++++...|+.+..+.||.|++.
T Consensus 159 l~~~l~--l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Ivs~ 235 (383)
T PRK11705 159 ICRKLQ--LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIVSV 235 (383)
T ss_pred HHHHhC--CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEEEe
Confidence 445555 6788999999999999999998876 67999999976 8887765 235778888885444579999999
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcC
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAG 160 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 160 (180)
.+++|+++.....+++++.++|+| ||.+++.+......... .....+ .+...++...+.+++.+.++ .|
T Consensus 236 ~~~ehvg~~~~~~~l~~i~r~Lkp---GG~lvl~~i~~~~~~~~-----~~~~i~--~yifp~g~lps~~~i~~~~~-~~ 304 (383)
T PRK11705 236 GMFEHVGPKNYRTYFEVVRRCLKP---DGLFLLHTIGSNKTDTN-----VDPWIN--KYIFPNGCLPSVRQIAQASE-GL 304 (383)
T ss_pred CchhhCChHHHHHHHHHHHHHcCC---CcEEEEEEccCCCCCCC-----CCCCce--eeecCCCcCCCHHHHHHHHH-CC
Confidence 999999877666899999999999 89999877644332111 011111 12234455667888877766 58
Q ss_pred CeEEEEeecCC
Q 030291 161 FTHYKIAPIFG 171 (180)
Q Consensus 161 f~~~~~~~~~~ 171 (180)
|.+.++...+.
T Consensus 305 ~~v~d~~~~~~ 315 (383)
T PRK11705 305 FVMEDWHNFGA 315 (383)
T ss_pred cEEEEEecChh
Confidence 99888766543
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-16 Score=115.17 Aligned_cols=163 Identities=15% Similarity=0.138 Sum_probs=114.4
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCC-CeEEEeeCch-hhccCCC----CCCeeEEecCCccc---CCCccEEEecccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPG-IKCTVLDLPH-AVTDMPQ----TDNLKYIEGDMFQF---IPPSDAFFFKTVF 83 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~-~~~~~~D~~~-~~~~a~~----~~~~~~~~~d~~~~---~~~~D~v~~~~~l 83 (180)
..++.+|||+|||+|..+..+++..+. .+++++|+++ ++..+++ ..++++..+|+.+. .+.||+|+++.++
T Consensus 37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~ 116 (223)
T TIGR01934 37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGL 116 (223)
T ss_pred cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeee
Confidence 346789999999999999999998865 6899999965 6666654 35788989988552 2369999999999
Q ss_pred ccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhh--hccceee--Ee-e---------cCCcccCH
Q 030291 84 HFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESK--LLFDIFM--NF-N---------VGGKERTE 149 (180)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~-~---------~~~~~~~~ 149 (180)
++.++.. .+++++.+.|+| ||.+++.+...+............ ....... .. . ....+.+.
T Consensus 117 ~~~~~~~--~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (223)
T TIGR01934 117 RNVTDIQ--KALREMYRVLKP---GGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQ 191 (223)
T ss_pred CCcccHH--HHHHHHHHHcCC---CcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCH
Confidence 9998877 789999999999 999999887544321111000000 0000000 00 0 00134588
Q ss_pred HHHHHHHHHcCCeEEEEeecCCc-eeEEEEeC
Q 030291 150 QEWGSLFVNAGFTHYKIAPIFGI-KSLIEVYP 180 (180)
Q Consensus 150 ~~~~~~l~~aGf~~~~~~~~~~~-~~~~~~~~ 180 (180)
++|.+.++++||+.++.....+. ..++.++|
T Consensus 192 ~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 192 EELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred HHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 99999999999999888877554 55665543
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.8e-18 Score=121.75 Aligned_cols=144 Identities=19% Similarity=0.181 Sum_probs=107.4
Q ss_pred CCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC--------CC----CeeEEecCCcccCCCccEEEeccc
Q 030291 16 LRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ--------TD----NLKYIEGDMFQFIPPSDAFFFKTV 82 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~--------~~----~~~~~~~d~~~~~~~~D~v~~~~~ 82 (180)
+.+|||+|||+|.++..|++. ++.++|+|.++ |++.|++ .. ++++.+.+..+..+.||.|+|+.+
T Consensus 90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence 477999999999999999999 67899999976 8888874 23 466777777556667999999999
Q ss_pred cccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCch--hhhhhhhccceeeEeecCCcccCHHHHHHHHHHcC
Q 030291 83 FHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDR--ELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAG 160 (180)
Q Consensus 83 l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 160 (180)
++|+.|+. .++..+.+.|+| +|.+++++.+..-..... .+.+.....- ...++...++.+++++..+++.++
T Consensus 168 leHV~dp~--~~l~~l~~~lkP---~G~lfittinrt~lS~~~~i~~~E~vl~iv-p~Gth~~ekfi~p~e~~~~l~~~~ 241 (282)
T KOG1270|consen 168 LEHVKDPQ--EFLNCLSALLKP---NGRLFITTINRTILSFAGTIFLAEIVLRIV-PKGTHTWEKFINPEELTSILNANG 241 (282)
T ss_pred HHHHhCHH--HHHHHHHHHhCC---CCceEeeehhhhHHHhhccccHHHHHHHhc-CCCCcCHHHcCCHHHHHHHHHhcC
Confidence 99999998 889999999999 999999987654322111 0111111111 011112235678999999999999
Q ss_pred CeEEEEe
Q 030291 161 FTHYKIA 167 (180)
Q Consensus 161 f~~~~~~ 167 (180)
+++..+.
T Consensus 242 ~~v~~v~ 248 (282)
T KOG1270|consen 242 AQVNDVV 248 (282)
T ss_pred cchhhhh
Confidence 9877664
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.2e-17 Score=111.09 Aligned_cols=99 Identities=26% Similarity=0.439 Sum_probs=85.7
Q ss_pred cCCCeEEEeCCcccHHHHHHH-HHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcc-c--C-CCccEEEecc
Q 030291 14 QGLRSMVDVGGGTGAFARIIS-EAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ-F--I-PPSDAFFFKT 81 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~-~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~-~--~-~~~D~v~~~~ 81 (180)
+...+|||+|||+|.++..++ +.+++.+++++|+++ +++.+++ ..++++.++|+.+ + . ..||+|++..
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNG 81 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcC
Confidence 467899999999999999999 457889999999966 9988875 4589999999977 2 2 3699999999
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
+++++.+.. .+++++.+.|++ +|.+++.+..
T Consensus 82 ~l~~~~~~~--~~l~~~~~~lk~---~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VLHHFPDPE--KVLKNIIRLLKP---GGILIISDPN 112 (152)
T ss_dssp TGGGTSHHH--HHHHHHHHHEEE---EEEEEEEEEE
T ss_pred chhhccCHH--HHHHHHHHHcCC---CcEEEEEECC
Confidence 999999998 779999999999 8988888876
|
... |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.9e-17 Score=117.58 Aligned_cols=155 Identities=18% Similarity=0.224 Sum_probs=108.8
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCch-hhccCCC-----CCCeeEEecCCcc-c--CCCc
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQ-F--IPPS 74 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~-~--~~~~ 74 (180)
+++.+. +.++.+|||+|||+|.++..+++.+ |..+++++|+++ +++.+++ ..++++...|+.. + .+.|
T Consensus 11 ~~~~~~--~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 88 (241)
T PRK08317 11 TFELLA--VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSF 88 (241)
T ss_pred HHHHcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCc
Confidence 445555 6778999999999999999999887 778999999965 7766653 4678899988754 2 2369
Q ss_pred cEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhh-hhhhccceeeEeecCCcccCHHHHH
Q 030291 75 DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELT-ESKLLFDIFMNFNVGGKERTEQEWG 153 (180)
Q Consensus 75 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (180)
|+|++..+++|+.++. .+++++.++|+| ||.+++.++............ ........+. ...........+.
T Consensus 89 D~v~~~~~~~~~~~~~--~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 161 (241)
T PRK08317 89 DAVRSDRVLQHLEDPA--RALAEIARVLRP---GGRVVVLDTDWDTLVWHSGDRALMRKILNFWS--DHFADPWLGRRLP 161 (241)
T ss_pred eEEEEechhhccCCHH--HHHHHHHHHhcC---CcEEEEEecCCCceeecCCChHHHHHHHHHHH--hcCCCCcHHHHHH
Confidence 9999999999999987 789999999999 999999875322110000000 0000111000 0112334567899
Q ss_pred HHHHHcCCeEEEEee
Q 030291 154 SLFVNAGFTHYKIAP 168 (180)
Q Consensus 154 ~~l~~aGf~~~~~~~ 168 (180)
+.++++||+.+++..
T Consensus 162 ~~l~~aGf~~~~~~~ 176 (241)
T PRK08317 162 GLFREAGLTDIEVEP 176 (241)
T ss_pred HHHHHcCCCceeEEE
Confidence 999999999776643
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-16 Score=112.93 Aligned_cols=139 Identities=15% Similarity=0.127 Sum_probs=100.7
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCcc-c-CCCccE
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQ-F-IPPSDA 76 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~-~-~~~~D~ 76 (180)
+++.+. ..++.+|||+|||+|.++..+++. +.+++++|+++ +++.+++ .-++++.+.|... + .+.||+
T Consensus 22 l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~ 97 (195)
T TIGR00477 22 VREAVK--TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYDF 97 (195)
T ss_pred HHHHhc--cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCCE
Confidence 444554 456789999999999999999986 56899999966 8887653 2246677777643 2 236999
Q ss_pred EEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHH
Q 030291 77 FFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLF 156 (180)
Q Consensus 77 v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 156 (180)
|+++.++|+++......+++++.++|+| ||.+++.+......... . ......++.+++.+.+
T Consensus 98 I~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lli~~~~~~~~~~~-------------~--~~~~~~~~~~el~~~f 159 (195)
T TIGR00477 98 IFSTVVFMFLQAGRVPEIIANMQAHTRP---GGYNLIVAAMDTADYPC-------------H--MPFSFTFKEDELRQYY 159 (195)
T ss_pred EEEecccccCCHHHHHHHHHHHHHHhCC---CcEEEEEEecccCCCCC-------------C--CCcCccCCHHHHHHHh
Confidence 9999999999877777999999999999 89877766533221000 0 0011346888998888
Q ss_pred HHcCCeEEEEe
Q 030291 157 VNAGFTHYKIA 167 (180)
Q Consensus 157 ~~aGf~~~~~~ 167 (180)
+ +|+++...
T Consensus 160 ~--~~~~~~~~ 168 (195)
T TIGR00477 160 A--DWELLKYN 168 (195)
T ss_pred C--CCeEEEee
Confidence 6 58877665
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-16 Score=115.25 Aligned_cols=149 Identities=16% Similarity=0.117 Sum_probs=100.7
Q ss_pred cCCCeEEEeCCcccHHHHHHHHH----CCCCeEEEeeCch-hhccCCC---CCCeeEEecCCc--c-cCCCccEEEeccc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEA----FPGIKCTVLDLPH-AVTDMPQ---TDNLKYIEGDMF--Q-FIPPSDAFFFKTV 82 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~----~~~~~~~~~D~~~-~~~~a~~---~~~~~~~~~d~~--~-~~~~~D~v~~~~~ 82 (180)
.++.+|||||||+|.++..+++. .++.+++++|+++ |++.+++ ..++++...+.. . ...+||+|+++.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 46789999999999998888754 3567899999965 8888875 245666655442 2 2236999999999
Q ss_pred cccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEee-----cCCcccCHHHHHHHHH
Q 030291 83 FHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFN-----VGGKERTEQEWGSLFV 157 (180)
Q Consensus 83 l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~ 157 (180)
+||+++++..++++++.++++ |.+++.+...+...... +.............. ...+.++.+++.++++
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~-----~~~~i~dl~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~ 212 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR-----RLVLHNDLIRSRLAYAL-FWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAP 212 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC-----eeEEEeccccCHHHHHH-HHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhh
Confidence 999999877789999999986 56666665544211100 011111000000111 1125689999999999
Q ss_pred HcCCeEEEEeec
Q 030291 158 NAGFTHYKIAPI 169 (180)
Q Consensus 158 ~aGf~~~~~~~~ 169 (180)
+ ||++...+.+
T Consensus 213 ~-Gf~~~~~~~~ 223 (232)
T PRK06202 213 Q-GWRVERQWPF 223 (232)
T ss_pred C-CCeEEeccce
Confidence 9 9998776655
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.7e-17 Score=101.81 Aligned_cols=88 Identities=23% Similarity=0.480 Sum_probs=73.3
Q ss_pred EEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC---CCCeeEEecCCcc-cC--CCccEEEeccccccCChHHHH
Q 030291 20 VDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ---TDNLKYIEGDMFQ-FI--PPSDAFFFKTVFHFFDDEDCL 92 (180)
Q Consensus 20 LdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~---~~~~~~~~~d~~~-~~--~~~D~v~~~~~l~~~~~~~~~ 92 (180)
||+|||+|..+..+++. +..+++++|+++ +++.+++ ..++++.+.|+.+ +. .+||+|++..+++|+++..
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~-- 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPE-- 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHH--
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccCHH--
Confidence 89999999999999999 788999999966 8888875 5567799999855 33 3699999999999997776
Q ss_pred HHHHHHHHhhccCCCCcEEEE
Q 030291 93 KLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 93 ~~l~~~~~~L~p~~~~G~~~~ 113 (180)
.+++++.++||| ||.+++
T Consensus 78 ~~l~e~~rvLk~---gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKP---GGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEE---EEEEEE
T ss_pred HHHHHHHHHcCc---CeEEeC
Confidence 889999999999 888765
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-17 Score=105.76 Aligned_cols=87 Identities=23% Similarity=0.447 Sum_probs=57.6
Q ss_pred EEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCe---eEEecCCcccC--CCccEEEeccccccCC
Q 030291 20 VDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNL---KYIEGDMFQFI--PPSDAFFFKTVFHFFD 87 (180)
Q Consensus 20 LdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~---~~~~~d~~~~~--~~~D~v~~~~~l~~~~ 87 (180)
||||||+|.++..+++.+|..+++++|+|+ |++.+++ ..+. ++...+..... .+||+|++..++||++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 799999999999999999999999999976 9988876 2233 33333332222 2799999999999997
Q ss_pred hHHHHHHHHHHHHhhccCCCCcEE
Q 030291 88 DEDCLKLLKKCREAIASNGERGKV 111 (180)
Q Consensus 88 ~~~~~~~l~~~~~~L~p~~~~G~~ 111 (180)
+.. .++++++++|+| ||.+
T Consensus 81 ~~~--~~l~~~~~~L~p---gG~l 99 (99)
T PF08242_consen 81 DIE--AVLRNIYRLLKP---GGIL 99 (99)
T ss_dssp -HH--HHHHHHTTT-TS---S-EE
T ss_pred hHH--HHHHHHHHHcCC---CCCC
Confidence 776 889999999999 7865
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-16 Score=116.55 Aligned_cols=136 Identities=20% Similarity=0.280 Sum_probs=101.4
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC--CCCeeEEecCCcc-c--CCCccEEEeccccccCCh
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ--TDNLKYIEGDMFQ-F--IPPSDAFFFKTVFHFFDD 88 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~--~~~~~~~~~d~~~-~--~~~~D~v~~~~~l~~~~~ 88 (180)
.+.+|||+|||+|.++..+++.++..+++++|++. ++..+++ ..++.+..+|+.+ + .+.||+|+++.++||+.+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 45789999999999999999999888899999965 7766654 3478899999855 2 235999999999999988
Q ss_pred HHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEEEEe
Q 030291 89 EDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIA 167 (180)
Q Consensus 89 ~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 167 (180)
.. .+++++.++|+| ||.+++..+..... ......... ....+.+.++|.++++++ |+.+...
T Consensus 114 ~~--~~l~~~~~~L~~---~G~l~~~~~~~~~~------~~~~~~~~~-----~~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 114 LS--QALSELARVLKP---GGLLAFSTFGPGTL------HELRQSFGQ-----HGLRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred HH--HHHHHHHHHcCC---CcEEEEEeCCccCH------HHHHHHHHH-----hccCCCCHHHHHHHHHHh-cCCcEEE
Confidence 87 789999999999 89998876533221 111111110 123456788888888887 7765543
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.9e-16 Score=113.13 Aligned_cols=144 Identities=13% Similarity=0.169 Sum_probs=101.8
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccCCCccEEEecccccc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFIPPSDAFFFKTVFHF 85 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~~~~D~v~~~~~l~~ 85 (180)
.+..+|||+|||+|.++..+++. +.+++++|+++ ++..+++ ..++++.++|+.+....||+|++..+++|
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~ 131 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIH 131 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHh
Confidence 45789999999999999999876 56899999965 8887764 14789999998654467999999999999
Q ss_pred CChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeE--eecCCcccCHHHHHHHHHHcCCeE
Q 030291 86 FDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMN--FNVGGKERTEQEWGSLFVNAGFTH 163 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~aGf~~ 163 (180)
++......+++++.+++++ |.++.... .... ............. .......++.+++.++++++||++
T Consensus 132 ~~~~~~~~~l~~i~~~~~~----~~~i~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v 201 (219)
T TIGR02021 132 YPASDMAKALGHLASLTKE----RVIFTFAP---KTAW---LAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKI 201 (219)
T ss_pred CCHHHHHHHHHHHHHHhCC----CEEEEECC---CchH---HHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCcee
Confidence 9877777889999999887 44333221 1111 1011111111000 011224568999999999999999
Q ss_pred EEEeec
Q 030291 164 YKIAPI 169 (180)
Q Consensus 164 ~~~~~~ 169 (180)
+.....
T Consensus 202 ~~~~~~ 207 (219)
T TIGR02021 202 VREGLV 207 (219)
T ss_pred eeeecc
Confidence 877644
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.1e-16 Score=110.86 Aligned_cols=155 Identities=11% Similarity=0.075 Sum_probs=100.8
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcc-cC--CCccEEEeccccccCChH
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQ-FI--PPSDAFFFKTVFHFFDDE 89 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~-~~--~~~D~v~~~~~l~~~~~~ 89 (180)
.++.+|||||||+|..+..+.+.+ +.+++++|+++ |++.+++. ..+.++|+.+ +. .+||+|++.+++||+++.
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~ 126 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA--DDKVVGSFEALPFRDKSFDVVMSSFALHASDNI 126 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc--cceEEechhhCCCCCCCEEEEEecChhhccCCH
Confidence 357899999999999999998886 56899999976 99988753 2456777744 32 369999999999999998
Q ss_pred HHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhh--hccceeeE-eec-----------CCcccCHHHHHHH
Q 030291 90 DCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESK--LLFDIFMN-FNV-----------GGKERTEQEWGSL 155 (180)
Q Consensus 90 ~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~-----------~~~~~~~~~~~~~ 155 (180)
. ++++++.++||| ...+ .+...++......+.... ........ ... -..+.+.+++.++
T Consensus 127 ~--~~l~e~~RvLkp---~~~i--le~~~p~~~~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~ 199 (226)
T PRK05785 127 E--KVIAEFTRVSRK---QVGF--IAMGKPDNVIKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREI 199 (226)
T ss_pred H--HHHHHHHHHhcC---ceEE--EEeCCCCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHH
Confidence 8 779999999998 4322 333332221111010000 00000000 000 0134578999999
Q ss_pred HHHcCCeEEEEeec-CCceeEEEEe
Q 030291 156 FVNAGFTHYKIAPI-FGIKSLIEVY 179 (180)
Q Consensus 156 l~~aGf~~~~~~~~-~~~~~~~~~~ 179 (180)
++++| ..++.... .|...+...+
T Consensus 200 ~~~~~-~~~~~~~~~~G~~~~~~~~ 223 (226)
T PRK05785 200 FEKYA-DIKVYEERGLGLVYFVVGS 223 (226)
T ss_pred HHHHh-CceEEEEccccEEEEEEEe
Confidence 99974 54555544 5566665554
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.1e-16 Score=100.36 Aligned_cols=86 Identities=17% Similarity=0.336 Sum_probs=71.0
Q ss_pred EEEeCCcccHHHHHHHHHC---CCCeEEEeeCch-hhccCCC-----CCCeeEEecCCcc---cCCCccEEEecc-cccc
Q 030291 19 MVDVGGGTGAFARIISEAF---PGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQ---FIPPSDAFFFKT-VFHF 85 (180)
Q Consensus 19 iLdiG~G~G~~~~~l~~~~---~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~---~~~~~D~v~~~~-~l~~ 85 (180)
|||+|||+|..+..+.+.+ |..+++++|+++ |++.+++ ..+++++++|+.+ ..+.||+|++.+ +++|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999886 457999999966 9988875 3589999999965 234799999955 5999
Q ss_pred CChHHHHHHHHHHHHhhcc
Q 030291 86 FDDEDCLKLLKKCREAIAS 104 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~L~p 104 (180)
+.+++...+++++.++|+|
T Consensus 81 ~~~~~~~~ll~~~~~~l~p 99 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRP 99 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEE
T ss_pred CCHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.9e-16 Score=108.92 Aligned_cols=102 Identities=15% Similarity=0.213 Sum_probs=85.7
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-CCCeeEEecCCcccCC--CccEEEeccccccCCh
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-TDNLKYIEGDMFQFIP--PSDAFFFKTVFHFFDD 88 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-~~~~~~~~~d~~~~~~--~~D~v~~~~~l~~~~~ 88 (180)
++++.+|||||||+|..+..+.+..++.+++++|+++ +++.+++ ..++.+.++|+.++.+ +||+|+++.+++|+++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCH
Confidence 4567899999999999999999887888999999976 9999876 4678888888866433 6999999999999987
Q ss_pred HHHHHHHHHHHHhhccCCCCcEEEEEEeeeC
Q 030291 89 EDCLKLLKKCREAIASNGERGKVLIIDIVID 119 (180)
Q Consensus 89 ~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~ 119 (180)
....++++++.++++ +.+++.+...+
T Consensus 121 ~~~~~~l~el~r~~~-----~~v~i~e~~~~ 146 (204)
T TIGR03587 121 DNLPTAYRELYRCSN-----RYILIAEYYNP 146 (204)
T ss_pred HHHHHHHHHHHhhcC-----cEEEEEEeeCC
Confidence 777789999999873 78888887543
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-15 Score=113.62 Aligned_cols=132 Identities=17% Similarity=0.159 Sum_probs=98.2
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCccc--CCCccEEEecccccc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQF--IPPSDAFFFKTVFHF 85 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~~--~~~~D~v~~~~~l~~ 85 (180)
..+.+|||+|||+|.++..+++. +.+++++|.++ +++.+++ ..++++...|+... ..+||+|++..++||
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMF 196 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhh
Confidence 34569999999999999999886 67899999976 8877654 33678888887442 236999999999999
Q ss_pred CChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEEE
Q 030291 86 FDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYK 165 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 165 (180)
++.+....+++++.++|+| ||.+++........... . ......++.+++.+.++. |+++.
T Consensus 197 l~~~~~~~~l~~~~~~Lkp---gG~~l~v~~~~~~~~~~--------~-------~p~~~~~~~~el~~~~~~--~~i~~ 256 (287)
T PRK12335 197 LNRERIPAIIKNMQEHTNP---GGYNLIVCAMDTEDYPC--------P-------MPFSFTFKEGELKDYYQD--WEIVK 256 (287)
T ss_pred CCHHHHHHHHHHHHHhcCC---CcEEEEEEecccccCCC--------C-------CCCCcccCHHHHHHHhCC--CEEEE
Confidence 9887788999999999999 89877755432221000 0 011234678899998854 88877
Q ss_pred Ee
Q 030291 166 IA 167 (180)
Q Consensus 166 ~~ 167 (180)
..
T Consensus 257 ~~ 258 (287)
T PRK12335 257 YN 258 (287)
T ss_pred Ee
Confidence 64
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-15 Score=121.72 Aligned_cols=140 Identities=14% Similarity=0.200 Sum_probs=104.7
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----CCCeeEEecCCcc---cC--CCc
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----TDNLKYIEGDMFQ---FI--PPS 74 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----~~~~~~~~~d~~~---~~--~~~ 74 (180)
+++.+. ..+..+|||||||+|.++..+++.. .+++++|+++ +++.+++ ..++++.++|+.+ +. .+|
T Consensus 29 il~~l~--~~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~f 104 (475)
T PLN02336 29 ILSLLP--PYEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSV 104 (475)
T ss_pred HHhhcC--ccCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCE
Confidence 344444 3456799999999999999999884 4799999965 8876643 4578999999853 22 369
Q ss_pred cEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHH
Q 030291 75 DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGS 154 (180)
Q Consensus 75 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (180)
|+|+++.+++|++++....+++++.++|+| ||.+++.+........ ..+ .......+....|..
T Consensus 105 D~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~---gG~l~~~d~~~~~~~~---------~~~----~~~~~~~~~~~~~~~ 168 (475)
T PLN02336 105 DLIFSNWLLMYLSDKEVENLAERMVKWLKV---GGYIFFRESCFHQSGD---------SKR----KNNPTHYREPRFYTK 168 (475)
T ss_pred EEEehhhhHHhCCHHHHHHHHHHHHHhcCC---CeEEEEEeccCCCCCc---------ccc----cCCCCeecChHHHHH
Confidence 999999999999998777999999999999 9999998765332210 000 011123456789999
Q ss_pred HHHHcCCeEE
Q 030291 155 LFVNAGFTHY 164 (180)
Q Consensus 155 ~l~~aGf~~~ 164 (180)
++.++||...
T Consensus 169 ~f~~~~~~~~ 178 (475)
T PLN02336 169 VFKECHTRDE 178 (475)
T ss_pred HHHHheeccC
Confidence 9999998765
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.8e-15 Score=108.76 Aligned_cols=145 Identities=16% Similarity=0.200 Sum_probs=100.7
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccCCCccEEEecccccc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFIPPSDAFFFKTVFHF 85 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~~~~D~v~~~~~l~~ 85 (180)
.+..+|||||||+|.++..+++. +.+++++|+++ ++..+++ ..++++..+|+....+.||+|++..+++|
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~--~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR--GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence 45779999999999999999887 45699999966 8887764 14789999996334457999999999999
Q ss_pred CChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceee-E-eecCCcccCHHHHHHHHHHcCCeE
Q 030291 86 FDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFM-N-FNVGGKERTEQEWGSLFVNAGFTH 163 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~l~~aGf~~ 163 (180)
++++....+++++.+.+++ |.++.... .... ..........+. . ........+.++|.++++++||++
T Consensus 140 ~~~~~~~~~l~~l~~~~~~----~~~i~~~~---~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 209 (230)
T PRK07580 140 YPQEDAARMLAHLASLTRG----SLIFTFAP---YTPL---LALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKV 209 (230)
T ss_pred CCHHHHHHHHHHHHhhcCC----eEEEEECC---ccHH---HHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCce
Confidence 9988877889999887654 44443221 1110 001111111100 0 011234568899999999999999
Q ss_pred EEEeecC
Q 030291 164 YKIAPIF 170 (180)
Q Consensus 164 ~~~~~~~ 170 (180)
.++....
T Consensus 210 ~~~~~~~ 216 (230)
T PRK07580 210 VRTERIS 216 (230)
T ss_pred Eeeeecc
Confidence 8887653
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.7e-15 Score=112.81 Aligned_cols=147 Identities=14% Similarity=0.102 Sum_probs=97.1
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCCC-----------CCeeEEecCCcccCCCccEEEeccc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQT-----------DNLKYIEGDMFQFIPPSDAFFFKTV 82 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~-----------~~~~~~~~d~~~~~~~~D~v~~~~~ 82 (180)
++.+|||||||+|.++..+++. +.+++++|+++ |++.+++. .++++.+.|+.+....||+|++..+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v 221 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV 221 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence 4679999999999999999987 67899999976 88877641 2567888887444457999999999
Q ss_pred cccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCe
Q 030291 83 FHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFT 162 (180)
Q Consensus 83 l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 162 (180)
++|+++.....+++.+.+ +.+ |++++.. . +.......+......+.-.. .......++.+++.++++++||+
T Consensus 222 L~H~p~~~~~~ll~~l~~-l~~----g~liIs~-~-p~~~~~~~l~~~g~~~~g~~-~~~r~y~~s~eel~~lL~~AGf~ 293 (315)
T PLN02585 222 LIHYPQDKADGMIAHLAS-LAE----KRLIISF-A-PKTLYYDILKRIGELFPGPS-KATRAYLHAEADVERALKKAGWK 293 (315)
T ss_pred EEecCHHHHHHHHHHHHh-hcC----CEEEEEe-C-CcchHHHHHHHHHhhcCCCC-cCceeeeCCHHHHHHHHHHCCCE
Confidence 999988776677777775 445 5555532 1 11111110101000110000 00001235899999999999999
Q ss_pred EEEEeecCC
Q 030291 163 HYKIAPIFG 171 (180)
Q Consensus 163 ~~~~~~~~~ 171 (180)
+.+......
T Consensus 294 v~~~~~~~~ 302 (315)
T PLN02585 294 VARREMTAT 302 (315)
T ss_pred EEEEEEeec
Confidence 887665543
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.8e-15 Score=108.34 Aligned_cols=145 Identities=12% Similarity=0.105 Sum_probs=98.8
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCC---C----CCCeeEEecCCcc--cCCCccEEEecccc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMP---Q----TDNLKYIEGDMFQ--FIPPSDAFFFKTVF 83 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~---~----~~~~~~~~~d~~~--~~~~~D~v~~~~~l 83 (180)
-.+++|||||||.|.++-.++...+ ..++|+|.+. ...+++ + ...+......+.+ ....||+|++.++|
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~FDtVF~MGVL 192 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGAFDTVFSMGVL 192 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCCcCEEEEeeeh
Confidence 3578999999999999999998853 3689999854 333322 1 2233343333322 23469999999999
Q ss_pred ccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeE
Q 030291 84 HFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTH 163 (180)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 163 (180)
+|..++- ..|.++++.|++ ||.+++-....+...... +........ ...-+...+...+...++++||+.
T Consensus 193 YHrr~Pl--~~L~~Lk~~L~~---gGeLvLETlvi~g~~~~~-L~P~~rYa~----m~nv~FiPs~~~L~~wl~r~gF~~ 262 (315)
T PF08003_consen 193 YHRRSPL--DHLKQLKDSLRP---GGELVLETLVIDGDENTV-LVPEDRYAK----MRNVWFIPSVAALKNWLERAGFKD 262 (315)
T ss_pred hccCCHH--HHHHHHHHhhCC---CCEEEEEEeeecCCCceE-EccCCcccC----CCceEEeCCHHHHHHHHHHcCCce
Confidence 9999999 779999999999 888887666555443322 111110000 001113358899999999999999
Q ss_pred EEEeec
Q 030291 164 YKIAPI 169 (180)
Q Consensus 164 ~~~~~~ 169 (180)
+++.+.
T Consensus 263 v~~v~~ 268 (315)
T PF08003_consen 263 VRCVDV 268 (315)
T ss_pred EEEecC
Confidence 998755
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-14 Score=101.22 Aligned_cols=134 Identities=17% Similarity=0.170 Sum_probs=101.6
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCccc-CCCccEEEecccccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQF-IPPSDAFFFKTVFHF 85 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~~-~~~~D~v~~~~~l~~ 85 (180)
..++.+|||+|||+|.++..+.+..+ +++++|+++ +++.+++ ..++++..+|..+. .+.||+|+++-.+++
T Consensus 17 ~~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 17 ELKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLP 94 (179)
T ss_pred hcCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCC
Confidence 34567899999999999999998864 899999965 8877764 34678888888653 347999999988776
Q ss_pred CChH-------------------HHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcc
Q 030291 86 FDDE-------------------DCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKE 146 (180)
Q Consensus 86 ~~~~-------------------~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (180)
.++. ....+++++.++|+| ||.+++.....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~---gG~~~~~~~~~---------------------------- 143 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKE---GGRVQLIQSSL---------------------------- 143 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCC---CCEEEEEEecc----------------------------
Confidence 6532 135789999999999 99988865311
Q ss_pred cCHHHHHHHHHHcCCeEEEEeecCCceeEEEEe
Q 030291 147 RTEQEWGSLFVNAGFTHYKIAPIFGIKSLIEVY 179 (180)
Q Consensus 147 ~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~ 179 (180)
...+++.+.+++.||+...+...+-+.--+.++
T Consensus 144 ~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~ 176 (179)
T TIGR00537 144 NGEPDTFDKLDERGFRYEIVAERGLFFEELFAI 176 (179)
T ss_pred CChHHHHHHHHhCCCeEEEEEEeecCceEEEEE
Confidence 124778899999999988887776665444443
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-14 Score=103.50 Aligned_cols=131 Identities=15% Similarity=0.160 Sum_probs=99.2
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------------------CCCeeEEecCCcccC---
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------------------TDNLKYIEGDMFQFI--- 71 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------------------~~~~~~~~~d~~~~~--- 71 (180)
+++.+|||+|||.|..+..|+++ +..++++|+|+ +++.+.+ ..++++.++|+.+..
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 46689999999999999999988 77899999976 7776411 346889999997632
Q ss_pred -CCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHH
Q 030291 72 -PPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQ 150 (180)
Q Consensus 72 -~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (180)
+.||.|+-..+++|++...+..+++.+.++|+| ||.+++.......... .......+.+
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkp---gG~~ll~~~~~~~~~~-----------------~gpp~~~~~~ 170 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPP---GARQLLITLDYDQSEM-----------------AGPPFSVSPA 170 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCC---CCeEEEEEEEcCCCCC-----------------CCcCCCCCHH
Confidence 469999999999999999889999999999999 8887776654432110 0011346888
Q ss_pred HHHHHHHHcCCeEEEEe
Q 030291 151 EWGSLFVNAGFTHYKIA 167 (180)
Q Consensus 151 ~~~~~l~~aGf~~~~~~ 167 (180)
++.++++. +|++..+.
T Consensus 171 eL~~~f~~-~~~i~~~~ 186 (213)
T TIGR03840 171 EVEALYGG-HYEIELLE 186 (213)
T ss_pred HHHHHhcC-CceEEEEe
Confidence 99888863 45554443
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.9e-14 Score=100.78 Aligned_cols=139 Identities=10% Similarity=0.112 Sum_probs=96.0
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccC----CCCCCeeEEecCCccc------CCCccEEEecc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDM----PQTDNLKYIEGDMFQF------IPPSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a----~~~~~~~~~~~d~~~~------~~~~D~v~~~~ 81 (180)
++++.+|||+|||+|.++..+++..+..+++++|.++ |++.+ ++..++.++.+|...+ ...+|+|++.
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d- 148 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQD- 148 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEEC-
Confidence 6788999999999999999999887656899999965 76633 3356889999998542 1259999853
Q ss_pred ccccCChHH-HHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcC
Q 030291 82 VFHFFDDED-CLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAG 160 (180)
Q Consensus 82 ~l~~~~~~~-~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 160 (180)
+.++. ...+++++.++||| ||.++++-.... .+... .. . ...++..+.++++|
T Consensus 149 ----~~~p~~~~~~L~~~~r~LKp---GG~lvI~v~~~~--------------~d~~~---~~-~-~~~~~~~~~l~~aG 202 (226)
T PRK04266 149 ----VAQPNQAEIAIDNAEFFLKD---GGYLLLAIKARS--------------IDVTK---DP-K-EIFKEEIRKLEEGG 202 (226)
T ss_pred ----CCChhHHHHHHHHHHHhcCC---CcEEEEEEeccc--------------ccCcC---CH-H-HHHHHHHHHHHHcC
Confidence 22222 23568999999999 999999522110 00000 00 0 11234459999999
Q ss_pred CeEEEEeecCCc---eeEEEE
Q 030291 161 FTHYKIAPIFGI---KSLIEV 178 (180)
Q Consensus 161 f~~~~~~~~~~~---~~~~~~ 178 (180)
|+.++.....+. +..+.+
T Consensus 203 F~~i~~~~l~p~~~~h~~~v~ 223 (226)
T PRK04266 203 FEILEVVDLEPYHKDHAAVVA 223 (226)
T ss_pred CeEEEEEcCCCCcCCeEEEEE
Confidence 999999888655 554443
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.9e-15 Score=104.28 Aligned_cols=119 Identities=17% Similarity=0.296 Sum_probs=91.0
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcccCC-CccEEEeccccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQFIP-PSDAFFFKTVFH 84 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~~~-~~D~v~~~~~l~ 84 (180)
..++.+|||+|||+|.++..+++.+|+.+++++|.++ +++.+++ ..++++.++|.....+ .||+|++....+
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~~~~~~~ 108 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIFIGGSGG 108 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEEECCCcc
Confidence 5678899999999999999999998889999999955 7777764 2478888888744333 699999977654
Q ss_pred cCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEE
Q 030291 85 FFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHY 164 (180)
Q Consensus 85 ~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 164 (180)
++ ..+++.+.+.|+| ||.+++..... -+.+++...+++.||+.+
T Consensus 109 ~~-----~~~l~~~~~~Lk~---gG~lv~~~~~~----------------------------~~~~~~~~~l~~~g~~~~ 152 (187)
T PRK08287 109 NL-----TAIIDWSLAHLHP---GGRLVLTFILL----------------------------ENLHSALAHLEKCGVSEL 152 (187)
T ss_pred CH-----HHHHHHHHHhcCC---CeEEEEEEecH----------------------------hhHHHHHHHHHHCCCCcc
Confidence 32 2678999999999 88887743211 123567788999998766
Q ss_pred EEe
Q 030291 165 KIA 167 (180)
Q Consensus 165 ~~~ 167 (180)
++.
T Consensus 153 ~~~ 155 (187)
T PRK08287 153 DCV 155 (187)
T ss_pred eEE
Confidence 653
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.4e-15 Score=110.98 Aligned_cols=99 Identities=20% Similarity=0.365 Sum_probs=80.1
Q ss_pred cCCCeEEEeCCcccH----HHHHHHHHCC-----CCeEEEeeCch-hhccCCCC--------------------------
Q 030291 14 QGLRSMVDVGGGTGA----FARIISEAFP-----GIKCTVLDLPH-AVTDMPQT-------------------------- 57 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~----~~~~l~~~~~-----~~~~~~~D~~~-~~~~a~~~-------------------------- 57 (180)
.++.+|+|+|||+|. ++..+.+.++ +.+++++|+++ |++.|++.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 356799999999997 3445555543 57899999976 99888751
Q ss_pred -------CCeeEEecCCcccC---CCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 58 -------DNLKYIEGDMFQFI---PPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 58 -------~~~~~~~~d~~~~~---~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
.+++|.+.|+.+.. +.||+|+|..+++|++++...++++++.++|+| ||.+++..
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~p---GG~L~lg~ 242 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKP---GGYLFLGH 242 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCC---CeEEEEEC
Confidence 36889999997632 369999999999999988888999999999999 88888853
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.6e-15 Score=104.03 Aligned_cols=138 Identities=15% Similarity=0.169 Sum_probs=94.0
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCcc-cC-CCccE
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQ-FI-PPSDA 76 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~-~~-~~~D~ 76 (180)
+++.+. .-++.++||+|||.|..+..|++. +..|+++|.++ .++.+++ .-.++..+.|+.+ .. ..||+
T Consensus 22 v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD~ 97 (192)
T PF03848_consen 22 VLEAVP--LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYDF 97 (192)
T ss_dssp HHHHCT--TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEEE
T ss_pred HHHHHh--hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcCE
Confidence 334444 456789999999999999999999 77899999976 7776653 4558888999855 22 36999
Q ss_pred EEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHH
Q 030291 77 FFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLF 156 (180)
Q Consensus 77 v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 156 (180)
|++..+++|++.+.+.++++.+.+.++| ||.+++........... .. .....+.+.++.+.+
T Consensus 98 I~st~v~~fL~~~~~~~i~~~m~~~~~p---GG~~li~~~~~~~d~p~--------~~-------~~~f~~~~~EL~~~y 159 (192)
T PF03848_consen 98 IVSTVVFMFLQRELRPQIIENMKAATKP---GGYNLIVTFMETPDYPC--------PS-------PFPFLLKPGELREYY 159 (192)
T ss_dssp EEEESSGGGS-GGGHHHHHHHHHHTEEE---EEEEEEEEEB--SSS----------SS---------S--B-TTHHHHHT
T ss_pred EEEEEEeccCCHHHHHHHHHHHHhhcCC---cEEEEEEEecccCCCCC--------CC-------CCCcccCHHHHHHHh
Confidence 9999999999999999999999999999 88877755433221100 00 011234567777777
Q ss_pred HHcCCeEEEE
Q 030291 157 VNAGFTHYKI 166 (180)
Q Consensus 157 ~~aGf~~~~~ 166 (180)
. ||++++.
T Consensus 160 ~--dW~il~y 167 (192)
T PF03848_consen 160 A--DWEILKY 167 (192)
T ss_dssp T--TSEEEEE
T ss_pred C--CCeEEEE
Confidence 4 6887664
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-14 Score=103.35 Aligned_cols=147 Identities=22% Similarity=0.287 Sum_probs=107.8
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCC------CeEEEeeCc-hhhccCCC---------CCCeeEEecCCcc-cCC--C
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPG------IKCTVLDLP-HAVTDMPQ---------TDNLKYIEGDMFQ-FIP--P 73 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~------~~~~~~D~~-~~~~~a~~---------~~~~~~~~~d~~~-~~~--~ 73 (180)
..+..++||++||||.++-.+++..+. .++++.|++ +|+..+++ ..++.++.+|..+ +++ .
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s 177 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDS 177 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCc
Confidence 455689999999999999999988655 789999995 59888764 3458899999954 444 5
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEee---c--------
Q 030291 74 SDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFN---V-------- 142 (180)
Q Consensus 74 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-------- 142 (180)
+|...+.+.+.++++.+ +.|++++|+||| ||++++.++..-+.+.-..+.+ ...++...... .
T Consensus 178 ~D~yTiafGIRN~th~~--k~l~EAYRVLKp---GGrf~cLeFskv~~~~l~~fy~-~ysf~VlpvlG~~iagd~~sYqY 251 (296)
T KOG1540|consen 178 FDAYTIAFGIRNVTHIQ--KALREAYRVLKP---GGRFSCLEFSKVENEPLKWFYD-QYSFDVLPVLGEIIAGDRKSYQY 251 (296)
T ss_pred ceeEEEecceecCCCHH--HHHHHHHHhcCC---CcEEEEEEccccccHHHHHHHH-hhhhhhhchhhHhhhhhHhhhhh
Confidence 99999999999999999 669999999999 9999998876544221111111 11111100000 0
Q ss_pred ----CCcccCHHHHHHHHHHcCCeEEE
Q 030291 143 ----GGKERTEQEWGSLFVNAGFTHYK 165 (180)
Q Consensus 143 ----~~~~~~~~~~~~~l~~aGf~~~~ 165 (180)
-.++.+-+++..+.+++||..+.
T Consensus 252 LveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 252 LVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred HHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 01445788999999999999886
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.8e-14 Score=98.76 Aligned_cols=117 Identities=21% Similarity=0.261 Sum_probs=89.5
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCccc--CCCccEEEecccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQF--IPPSDAFFFKTVF 83 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~--~~~~D~v~~~~~l 83 (180)
++++.+|||+|||+|..+..++...++.+++++|.++ +++.+++ ..++++.++|+.+. ..+||+|+++..
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~- 121 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV- 121 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc-
Confidence 3457899999999999999999988899999999965 8887764 34599999998552 236999999753
Q ss_pred ccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeE
Q 030291 84 HFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTH 163 (180)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 163 (180)
.+.. .+++++.+.|+| ||.+++.... ....++.++.++.|+.+
T Consensus 122 ---~~~~--~~l~~~~~~Lkp---GG~lv~~~~~-----------------------------~~~~~l~~~~~~~~~~~ 164 (187)
T PRK00107 122 ---ASLS--DLVELCLPLLKP---GGRFLALKGR-----------------------------DPEEEIAELPKALGGKV 164 (187)
T ss_pred ---cCHH--HHHHHHHHhcCC---CeEEEEEeCC-----------------------------ChHHHHHHHHHhcCceE
Confidence 3333 789999999999 8988886421 12345667777778886
Q ss_pred EEEe
Q 030291 164 YKIA 167 (180)
Q Consensus 164 ~~~~ 167 (180)
.+.+
T Consensus 165 ~~~~ 168 (187)
T PRK00107 165 EEVI 168 (187)
T ss_pred eeeE
Confidence 5554
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.4e-15 Score=106.44 Aligned_cols=147 Identities=10% Similarity=0.062 Sum_probs=95.5
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcc---cC--CCccEEEeccccccC
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQ---FI--PPSDAFFFKTVFHFF 86 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~---~~--~~~D~v~~~~~l~~~ 86 (180)
++++.+|||||||+|.++..+++.. +..++++|+++ ++..+++ .++++.++|+.+ +. .+||+|+++.++||+
T Consensus 11 i~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~ 88 (194)
T TIGR02081 11 IPPGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQAT 88 (194)
T ss_pred cCCCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcC
Confidence 4567899999999999998887664 56789999965 7777754 357788888744 12 259999999999999
Q ss_pred ChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhc--cce---eeEeecCCcccCHHHHHHHHHHcCC
Q 030291 87 DDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLL--FDI---FMNFNVGGKERTEQEWGSLFVNAGF 161 (180)
Q Consensus 87 ~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~l~~aGf 161 (180)
+++. .+++++.+.+++ +.+.+ +..........+...... ... ......+.++++.+++.++++++||
T Consensus 89 ~d~~--~~l~e~~r~~~~----~ii~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf 160 (194)
T TIGR02081 89 RNPE--EILDEMLRVGRH----AIVSF--PNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNL 160 (194)
T ss_pred cCHH--HHHHHHHHhCCe----EEEEc--CChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCC
Confidence 9987 779988887655 33222 111000000000000000 000 0000112357799999999999999
Q ss_pred eEEEEeec
Q 030291 162 THYKIAPI 169 (180)
Q Consensus 162 ~~~~~~~~ 169 (180)
++++....
T Consensus 161 ~v~~~~~~ 168 (194)
T TIGR02081 161 RILDRAAF 168 (194)
T ss_pred EEEEEEEe
Confidence 99887654
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.8e-15 Score=106.65 Aligned_cols=147 Identities=14% Similarity=0.167 Sum_probs=100.8
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCccc----CCCccEEEecccc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQF----IPPSDAFFFKTVF 83 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~~----~~~~D~v~~~~~l 83 (180)
.++.+|||||||+|.++..+.+. +++++++|+++ ++..+++ ..++++...+..+. ...||+|++..++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 45778999999999999988876 56799999965 7766653 33567777777432 2369999999999
Q ss_pred ccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhcccee-eEeecCCcccCHHHHHHHHHHcCCe
Q 030291 84 HFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIF-MNFNVGGKERTEQEWGSLFVNAGFT 162 (180)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~aGf~ 162 (180)
+|.++.. .+++++.+.|+| ||.+++........................ .......++.+.++|.++++++||+
T Consensus 125 ~~~~~~~--~~l~~~~~~L~~---gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 199 (233)
T PRK05134 125 EHVPDPA--SFVRACAKLVKP---GGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLE 199 (233)
T ss_pred hccCCHH--HHHHHHHHHcCC---CcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCe
Confidence 9999887 779999999999 899887754321110000000000000000 0001123456889999999999999
Q ss_pred EEEEe
Q 030291 163 HYKIA 167 (180)
Q Consensus 163 ~~~~~ 167 (180)
+++..
T Consensus 200 ~v~~~ 204 (233)
T PRK05134 200 VQDIT 204 (233)
T ss_pred Eeeee
Confidence 98775
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.9e-15 Score=110.05 Aligned_cols=98 Identities=20% Similarity=0.347 Sum_probs=77.6
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCC-CCeEEEeeCch-hhccCCC-----C--CCeeEEecCCccc--C-CCc-----c
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFP-GIKCTVLDLPH-AVTDMPQ-----T--DNLKYIEGDMFQF--I-PPS-----D 75 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~~~~D~~~-~~~~a~~-----~--~~~~~~~~d~~~~--~-~~~-----D 75 (180)
++++.+|||+|||+|..+..+++..+ +.+++++|+|+ |++.+++ . .++.++++|+.+. . +.+ .
T Consensus 61 ~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~ 140 (301)
T TIGR03438 61 TGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRL 140 (301)
T ss_pred hCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeE
Confidence 34668999999999999999999876 57899999976 8877754 2 3467789999652 2 223 2
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEE
Q 030291 76 AFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 76 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
++++...+++++..+...+|++++++|+| ||.+++
T Consensus 141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~p---gG~~li 175 (301)
T TIGR03438 141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGP---GGGLLI 175 (301)
T ss_pred EEEecccccCCCHHHHHHHHHHHHHhcCC---CCEEEE
Confidence 45556789999988888999999999999 888876
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.6e-15 Score=101.00 Aligned_cols=149 Identities=11% Similarity=0.084 Sum_probs=100.0
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCccc-----CCCccEEEeccccccC
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQF-----IPPSDAFFFKTVFHFF 86 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~-----~~~~D~v~~~~~l~~~ 86 (180)
++++++|||+|||.|.+...|.+.. +++..|+|++. .+..|. ...++++++|+.+. ..+||.||++.+++++
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k-~v~g~GvEid~~~v~~cv-~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~ 88 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEK-QVDGYGVEIDPDNVAACV-ARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAV 88 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhc-CCeEEEEecCHHHHHHHH-HcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhH
Confidence 5789999999999999999888864 88999999955 454443 34577899999542 2369999999999999
Q ss_pred ChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhh-hhcc-ce---eeEeecCCcccCHHHHHHHHHHcCC
Q 030291 87 DDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTES-KLLF-DI---FMNFNVGGKERTEQEWGSLFVNAGF 161 (180)
Q Consensus 87 ~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~-~~---~~~~~~~~~~~~~~~~~~~l~~aGf 161 (180)
.+++ ++|+++.++-+ ..+++-++.........+... +... +. ..+-..+-++.|..++++++++.|+
T Consensus 89 ~~P~--~vL~EmlRVgr------~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i 160 (193)
T PF07021_consen 89 RRPD--EVLEEMLRVGR------RAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGI 160 (193)
T ss_pred hHHH--HHHHHHHHhcC------eEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCC
Confidence 9998 67888877743 444433332111111000000 0000 00 0011133467799999999999999
Q ss_pred eEEEEeecCC
Q 030291 162 THYKIAPIFG 171 (180)
Q Consensus 162 ~~~~~~~~~~ 171 (180)
++.+.....+
T Consensus 161 ~I~~~~~~~~ 170 (193)
T PF07021_consen 161 RIEERVFLDG 170 (193)
T ss_pred EEEEEEEEcC
Confidence 9998876533
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.59 E-value=5e-14 Score=98.39 Aligned_cols=91 Identities=21% Similarity=0.279 Sum_probs=72.5
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCccc--CCCccEEEecccccc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQF--IPPSDAFFFKTVFHF 85 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~--~~~~D~v~~~~~l~~ 85 (180)
++.+|||+|||+|..+..++...+..+++++|.++ +++.+++ ..+++++++|+.+. .+.||+|++.. +++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~ 120 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LAS 120 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhC
Confidence 37899999999999999998888888999999965 7766653 34699999999652 34799999876 432
Q ss_pred CChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 86 FDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
.. .+++.+.++|+| ||.+++.
T Consensus 121 ---~~--~~~~~~~~~Lkp---gG~lvi~ 141 (181)
T TIGR00138 121 ---LN--VLLELTLNLLKV---GGYFLAY 141 (181)
T ss_pred ---HH--HHHHHHHHhcCC---CCEEEEE
Confidence 22 568889999999 8888874
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.1e-14 Score=103.79 Aligned_cols=147 Identities=15% Similarity=0.165 Sum_probs=100.5
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CC-CeeEEecCCccc----CCCccEEEecccc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TD-NLKYIEGDMFQF----IPPSDAFFFKTVF 83 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~-~~~~~~~d~~~~----~~~~D~v~~~~~l 83 (180)
.+.+|||+|||+|.++..+++. +.+++++|+++ ++..+++ .. ++++...|..+. .+.||+|++..++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL--GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 4779999999999999988876 45699999965 7776654 22 588888887441 1369999999999
Q ss_pred ccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhcccee-eEeecCCcccCHHHHHHHHHHcCCe
Q 030291 84 HFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIF-MNFNVGGKERTEQEWGSLFVNAGFT 162 (180)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~aGf~ 162 (180)
+|+.++. .+++++.++|+| ||.+++........................ ........+.+.+++.++++++||+
T Consensus 123 ~~~~~~~--~~l~~~~~~L~~---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~ 197 (224)
T TIGR01983 123 EHVPDPQ--AFIRACAQLLKP---GGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLR 197 (224)
T ss_pred HhCCCHH--HHHHHHHHhcCC---CcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCe
Confidence 9999888 789999999999 898888765322110000000000000000 0001112456889999999999999
Q ss_pred EEEEee
Q 030291 163 HYKIAP 168 (180)
Q Consensus 163 ~~~~~~ 168 (180)
++++..
T Consensus 198 i~~~~~ 203 (224)
T TIGR01983 198 VKDVKG 203 (224)
T ss_pred eeeeee
Confidence 988763
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-14 Score=101.51 Aligned_cols=162 Identities=14% Similarity=0.117 Sum_probs=117.5
Q ss_pred ccCCC-eEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCC----C--CCCe-eEEecCCccc---C--------C
Q 030291 13 FQGLR-SMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMP----Q--TDNL-KYIEGDMFQF---I--------P 72 (180)
Q Consensus 13 ~~~~~-~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~----~--~~~~-~~~~~d~~~~---~--------~ 72 (180)
++... +|||||||||..+..+++.+|..++.-.|... .....+ . ..|+ .-+..|+.++ . .
T Consensus 22 l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~ 101 (204)
T PF06080_consen 22 LPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPE 101 (204)
T ss_pred hCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCC
Confidence 34555 49999999999999999999999999999844 322222 1 2222 2334444331 1 1
Q ss_pred CccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEee-cCCcccCHHH
Q 030291 73 PSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFN-VGGKERTEQE 151 (180)
Q Consensus 73 ~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 151 (180)
.||.|++..++|-.+-.....+++...++|++ ||.+++..+...++.... +....+|...... ..+-.++.++
T Consensus 102 ~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~---gG~L~~YGPF~~~G~~ts---~SN~~FD~sLr~rdp~~GiRD~e~ 175 (204)
T PF06080_consen 102 SFDAIFCINMLHISPWSAVEGLFAGAARLLKP---GGLLFLYGPFNRDGKFTS---ESNAAFDASLRSRDPEWGIRDIED 175 (204)
T ss_pred CcceeeehhHHHhcCHHHHHHHHHHHHHhCCC---CCEEEEeCCcccCCEeCC---cHHHHHHHHHhcCCCCcCccCHHH
Confidence 59999999999999988888999999999999 999999887766554332 3444444333222 2345689999
Q ss_pred HHHHHHHcCCeEEEEeecCCceeEEEEeC
Q 030291 152 WGSLFVNAGFTHYKIAPIFGIKSLIEVYP 180 (180)
Q Consensus 152 ~~~~l~~aGf~~~~~~~~~~~~~~~~~~~ 180 (180)
+.++.++.|++..++...+.=.-++.++|
T Consensus 176 v~~lA~~~GL~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 176 VEALAAAHGLELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred HHHHHHHCCCccCcccccCCCCeEEEEeC
Confidence 99999999999999988877666666654
|
The function of this family is unknown. |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-14 Score=101.90 Aligned_cols=142 Identities=17% Similarity=0.243 Sum_probs=97.6
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCc-hhhccCCC-----C-CCeeEEecCCcc--cC-CCccEEEecccc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLP-HAVTDMPQ-----T-DNLKYIEGDMFQ--FI-PPSDAFFFKTVF 83 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~-~~~~~a~~-----~-~~~~~~~~d~~~--~~-~~~D~v~~~~~l 83 (180)
....+.||.|+|.|+.+..++... -.++..+|+. +.++.|++ . ...++++..+.+ +. ..||+|++.+++
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CCcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 357899999999999999775443 3468999984 48888773 2 335677777755 32 269999999999
Q ss_pred ccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeE
Q 030291 84 HFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTH 163 (180)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 163 (180)
.|+.|.+...+|++|+++|+| +|.+++-+........ .+|.. -+.-.++.+.+.++|++||+++
T Consensus 133 ghLTD~dlv~fL~RCk~~L~~---~G~IvvKEN~~~~~~~---------~~D~~----DsSvTRs~~~~~~lF~~AGl~~ 196 (218)
T PF05891_consen 133 GHLTDEDLVAFLKRCKQALKP---NGVIVVKENVSSSGFD---------EFDEE----DSSVTRSDEHFRELFKQAGLRL 196 (218)
T ss_dssp GGS-HHHHHHHHHHHHHHEEE---EEEEEEEEEEESSSEE---------EEETT----TTEEEEEHHHHHHHHHHCT-EE
T ss_pred ccCCHHHHHHHHHHHHHhCcC---CcEEEEEecCCCCCCc---------ccCCc----cCeeecCHHHHHHHHHHcCCEE
Confidence 999999999999999999999 8888888876654311 11110 1123468899999999999999
Q ss_pred EEEeecCCc
Q 030291 164 YKIAPIFGI 172 (180)
Q Consensus 164 ~~~~~~~~~ 172 (180)
+......++
T Consensus 197 v~~~~Q~~f 205 (218)
T PF05891_consen 197 VKEEKQKGF 205 (218)
T ss_dssp EEEEE-TT-
T ss_pred EEeccccCC
Confidence 987766553
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.9e-14 Score=106.41 Aligned_cols=98 Identities=14% Similarity=0.224 Sum_probs=77.5
Q ss_pred ccCCCeEEEeCCcccHHHHHH--HHHCCCCeEEEeeCch-hhccCCC--------CCCeeEEecCCcccC---CCccEEE
Q 030291 13 FQGLRSMVDVGGGTGAFARII--SEAFPGIKCTVLDLPH-AVTDMPQ--------TDNLKYIEGDMFQFI---PPSDAFF 78 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l--~~~~~~~~~~~~D~~~-~~~~a~~--------~~~~~~~~~d~~~~~---~~~D~v~ 78 (180)
..++++|+|||||.|.++..+ +..+|+.+++++|.++ +++.|++ ..+++|..+|..+.. ..||+|+
T Consensus 121 ~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF 200 (296)
T PLN03075 121 NGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVF 200 (296)
T ss_pred cCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEE
Confidence 347899999999988554443 3457899999999955 8877764 367999999997632 4799999
Q ss_pred eccccccCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 79 FKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 79 ~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
+. +++++......++++++++.|+| ||.+++-
T Consensus 201 ~~-ALi~~dk~~k~~vL~~l~~~LkP---GG~Lvlr 232 (296)
T PLN03075 201 LA-ALVGMDKEEKVKVIEHLGKHMAP---GALLMLR 232 (296)
T ss_pred Ee-cccccccccHHHHHHHHHHhcCC---CcEEEEe
Confidence 99 88998655555899999999999 7777764
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.2e-14 Score=100.59 Aligned_cols=131 Identities=13% Similarity=0.152 Sum_probs=98.4
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------------------CCCeeEEecCCccc----
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------------------TDNLKYIEGDMFQF---- 70 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------------------~~~~~~~~~d~~~~---- 70 (180)
+++.+|||+|||.|..+..|++. +..|+++|+++ +++++.+ ..++++.++|+.+.
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 45679999999999999999987 77899999976 6775421 35688999999763
Q ss_pred CCCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHH
Q 030291 71 IPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQ 150 (180)
Q Consensus 71 ~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (180)
.+.||.|+-..+++|++...+..+++.+.++|+| ||.+++.......... ..+....+.+
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~p---gG~~~l~~~~~~~~~~-----------------~gPp~~~~~~ 173 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPA---GCRGLLVTLDYPQEEL-----------------AGPPFSVSDE 173 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCC---CCeEEEEEEEeCCccC-----------------CCCCCCCCHH
Confidence 2469999999999999999999999999999999 8866665444332210 0011346889
Q ss_pred HHHHHHHHcCCeEEEEe
Q 030291 151 EWGSLFVNAGFTHYKIA 167 (180)
Q Consensus 151 ~~~~~l~~aGf~~~~~~ 167 (180)
++.++++. +|++..+.
T Consensus 174 el~~~~~~-~~~i~~~~ 189 (218)
T PRK13255 174 EVEALYAG-CFEIELLE 189 (218)
T ss_pred HHHHHhcC-CceEEEee
Confidence 99998853 26655443
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.9e-15 Score=102.44 Aligned_cols=131 Identities=17% Similarity=0.267 Sum_probs=92.2
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----CCCeeEEecCCcccCC--CccEEEecccccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----TDNLKYIEGDMFQFIP--PSDAFFFKTVFHF 85 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----~~~~~~~~~d~~~~~~--~~D~v~~~~~l~~ 85 (180)
.+...++||+|||.|.++..|+... .+++++|+++ .++.+++ .+++++.+.|+.+..| .||+|+++.+++|
T Consensus 41 ~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SEVlYY 118 (201)
T PF05401_consen 41 RRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSEVLYY 118 (201)
T ss_dssp TSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES-GGG
T ss_pred ccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEehHhHc
Confidence 4566899999999999999999995 4799999966 8888874 6899999999966433 6999999999999
Q ss_pred CCh-HHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEE
Q 030291 86 FDD-EDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHY 164 (180)
Q Consensus 86 ~~~-~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 164 (180)
+.+ ++...++.++.++|+| ||.+++..... . .+ . . + ++....+.+.++|++. |..+
T Consensus 119 L~~~~~L~~~l~~l~~~L~p---gG~LV~g~~rd-~-~c-----~---~---w------gh~~ga~tv~~~~~~~-~~~~ 175 (201)
T PF05401_consen 119 LDDAEDLRAALDRLVAALAP---GGHLVFGHARD-A-NC-----R---R---W------GHAAGAETVLEMLQEH-LTEV 175 (201)
T ss_dssp SSSHHHHHHHHHHHHHTEEE---EEEEEEEEE-H-H-HH-----H---H---T------T-S--HHHHHHHHHHH-SEEE
T ss_pred CCCHHHHHHHHHHHHHHhCC---CCEEEEEEecC-C-cc-----c---c---c------CcccchHHHHHHHHHH-hhhe
Confidence 986 5678899999999999 88888866421 0 00 0 0 1 1234668888888887 5555
Q ss_pred EEee
Q 030291 165 KIAP 168 (180)
Q Consensus 165 ~~~~ 168 (180)
+...
T Consensus 176 ~~~~ 179 (201)
T PF05401_consen 176 ERVE 179 (201)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 5443
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.5e-15 Score=103.25 Aligned_cols=147 Identities=18% Similarity=0.213 Sum_probs=108.0
Q ss_pred CCeEEEeCCcccHHHHHHHHHCCC--CeEEEeeCch-hhccCCC-----CCCeeEEecCCccc-------CCCccEEEec
Q 030291 16 LRSMVDVGGGTGAFARIISEAFPG--IKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQF-------IPPSDAFFFK 80 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~~~~--~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~~-------~~~~D~v~~~ 80 (180)
+.+|||||||.|...-.+++..++ .++.+.|.++ +++..++ ..++...+.|+..+ .+++|.|.+.
T Consensus 72 ~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 72 AETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEE
Confidence 348999999999999999999877 8999999965 7777765 35555556666432 1269999999
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCC---cccCHHHHHHHHH
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGG---KERTEQEWGSLFV 157 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~ 157 (180)
++|..++......++.+++++||| ||.+++.|....+-.... . .....++...+....+ .+++.+++.+++.
T Consensus 152 FvLSAi~pek~~~a~~nl~~llKP---GG~llfrDYg~~DlaqlR-F-~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~ 226 (264)
T KOG2361|consen 152 FVLSAIHPEKMQSVIKNLRTLLKP---GGSLLFRDYGRYDLAQLR-F-KKGQCISENFYVRGDGTRAYFFTEEELDELFT 226 (264)
T ss_pred EEEeccChHHHHHHHHHHHHHhCC---CcEEEEeecccchHHHHh-c-cCCceeecceEEccCCceeeeccHHHHHHHHH
Confidence 999999999888999999999999 999999887554332211 0 0111222222222222 4679999999999
Q ss_pred HcCCeEEEEe
Q 030291 158 NAGFTHYKIA 167 (180)
Q Consensus 158 ~aGf~~~~~~ 167 (180)
++||..++..
T Consensus 227 ~agf~~~~~~ 236 (264)
T KOG2361|consen 227 KAGFEEVQLE 236 (264)
T ss_pred hcccchhccc
Confidence 9999987653
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.1e-14 Score=99.27 Aligned_cols=150 Identities=18% Similarity=0.127 Sum_probs=102.1
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCee-EEecCCcc----cCCCccEEEecc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLK-YIEGDMFQ----FIPPSDAFFFKT 81 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~-~~~~d~~~----~~~~~D~v~~~~ 81 (180)
.....+||||||||.+-.. ...-|.++++.+|+++ |-+.+.+ ..++. |+.++..+ +..+||.|++..
T Consensus 75 ~~K~~vLEvgcGtG~Nfkf-y~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tl 153 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKF-YPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTL 153 (252)
T ss_pred cCccceEEecccCCCCccc-ccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEE
Confidence 3456789999999987653 3334689999999965 6655543 45666 77776633 234799999999
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCC
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGF 161 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 161 (180)
++-...++. +.|.+++++|+| ||.+++.+....+...-+. ......+........+..++.+.+ +.++.+-|
T Consensus 154 vLCSve~~~--k~L~e~~rlLRp---gG~iifiEHva~~y~~~n~--i~q~v~ep~~~~~~dGC~ltrd~~-e~Leda~f 225 (252)
T KOG4300|consen 154 VLCSVEDPV--KQLNEVRRLLRP---GGRIIFIEHVAGEYGFWNR--ILQQVAEPLWHLESDGCVLTRDTG-ELLEDAEF 225 (252)
T ss_pred EEeccCCHH--HHHHHHHHhcCC---CcEEEEEecccccchHHHH--HHHHHhchhhheeccceEEehhHH-HHhhhccc
Confidence 999889998 669999999999 9999999987665433221 111122221111122345566655 67888889
Q ss_pred eEEEEeecCCc
Q 030291 162 THYKIAPIFGI 172 (180)
Q Consensus 162 ~~~~~~~~~~~ 172 (180)
+..........
T Consensus 226 ~~~~~kr~~~~ 236 (252)
T KOG4300|consen 226 SIDSCKRFNFG 236 (252)
T ss_pred ccchhhcccCC
Confidence 98776655433
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.2e-14 Score=114.37 Aligned_cols=103 Identities=20% Similarity=0.348 Sum_probs=84.4
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCcc-c--C--CCccEEEeccc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQ-F--I--PPSDAFFFKTV 82 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~-~--~--~~~D~v~~~~~ 82 (180)
.++.+|||||||+|..+..+++.+|+.+++++|+++ |++.+++ ..++.+.++|..+ + . .+||+|+++.+
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 457899999999999999999999999999999976 8888764 2467788888754 1 2 35999999999
Q ss_pred cccCC-----------hHHHHHHHHHHHHhhccCCCCcEEEEEEeeeC
Q 030291 83 FHFFD-----------DEDCLKLLKKCREAIASNGERGKVLIIDIVID 119 (180)
Q Consensus 83 l~~~~-----------~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~ 119 (180)
+|++. .....++++++.++||| ||.+++.+...+
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKP---GGrLII~D~v~~ 541 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKP---GGRIIIRDGIMT 541 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCC---CcEEEEEeCccC
Confidence 98752 34556899999999999 999999986544
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.2e-13 Score=99.15 Aligned_cols=126 Identities=19% Similarity=0.209 Sum_probs=91.8
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC---C----CCeeEEecCCcccCCCccEEEeccccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ---T----DNLKYIEGDMFQFIPPSDAFFFKTVFH 84 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~---~----~~~~~~~~d~~~~~~~~D~v~~~~~l~ 84 (180)
..++.+|||+|||+|.++..+++..+ .+++++|+++ +++.+++ . .++.+..++ ..||+|+++...
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~-----~~fD~Vvani~~- 189 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD-----LKADVIVANILA- 189 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC-----CCcCEEEEcCcH-
Confidence 35788999999999999987776643 3699999966 8887765 1 122222221 169999987543
Q ss_pred cCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEE
Q 030291 85 FFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHY 164 (180)
Q Consensus 85 ~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 164 (180)
.....+++++.++|+| ||.+++++... ...+++.+.+++.||++.
T Consensus 190 ----~~~~~l~~~~~~~Lkp---gG~lilsgi~~----------------------------~~~~~v~~~l~~~Gf~~~ 234 (250)
T PRK00517 190 ----NPLLELAPDLARLLKP---GGRLILSGILE----------------------------EQADEVLEAYEEAGFTLD 234 (250)
T ss_pred ----HHHHHHHHHHHHhcCC---CcEEEEEECcH----------------------------hhHHHHHHHHHHCCCEEE
Confidence 2234779999999999 99999865321 134678899999999999
Q ss_pred EEeecCCceeEEEEeC
Q 030291 165 KIAPIFGIKSLIEVYP 180 (180)
Q Consensus 165 ~~~~~~~~~~~~~~~~ 180 (180)
+.....++.+++..++
T Consensus 235 ~~~~~~~W~~~~~~~~ 250 (250)
T PRK00517 235 EVLERGEWVALVGKKK 250 (250)
T ss_pred EEEEeCCEEEEEEEeC
Confidence 9999888887766543
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.50 E-value=1e-13 Score=90.97 Aligned_cols=100 Identities=16% Similarity=0.286 Sum_probs=78.0
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcc---c-CCC
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ---F-IPP 73 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~---~-~~~ 73 (180)
+++.+. +++..+|||+|||+|..+..+++..|..+++++|+++ +++.+++ ..++++...|... . .+.
T Consensus 11 ~~~~~~--~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (124)
T TIGR02469 11 TLSKLR--LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPE 88 (124)
T ss_pred HHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCC
Confidence 344454 5667899999999999999999998888999999965 7777653 3578888888643 1 236
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 74 SDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 74 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
||.|++....+. ..++++.+.+.|+| ||.+++.
T Consensus 89 ~D~v~~~~~~~~-----~~~~l~~~~~~Lk~---gG~li~~ 121 (124)
T TIGR02469 89 PDRVFIGGSGGL-----LQEILEAIWRRLRP---GGRIVLN 121 (124)
T ss_pred CCEEEECCcchh-----HHHHHHHHHHHcCC---CCEEEEE
Confidence 999999765432 23789999999999 8888775
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.1e-12 Score=94.51 Aligned_cols=133 Identities=14% Similarity=0.105 Sum_probs=91.6
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCch-----hhccCCCCCCeeEEecCCccc------CCCccEEEec
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPH-----AVTDMPQTDNLKYIEGDMFQF------IPPSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~-----~~~~a~~~~~~~~~~~d~~~~------~~~~D~v~~~ 80 (180)
+++..+|||+|||+|.++..+++.. +.-+++++|+++ ++..++...|+.++..|+..+ .+.+|+|++.
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFAD 209 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEe
Confidence 6788999999999999999999885 345899999964 455555567899999998543 2469999987
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcC
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAG 160 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 160 (180)
.. . +++ ...++.++.++||| ||.+++. .-.... +. .......++ +++ +.|+++|
T Consensus 210 va--~-pdq-~~il~~na~r~LKp---GG~~vI~-ika~~i-------------d~---g~~pe~~f~-~ev-~~L~~~G 263 (293)
T PTZ00146 210 VA--Q-PDQ-ARIVALNAQYFLKN---GGHFIIS-IKANCI-------------DS---TAKPEVVFA-SEV-QKLKKEG 263 (293)
T ss_pred CC--C-cch-HHHHHHHHHHhccC---CCEEEEE-Eecccc-------------cc---CCCHHHHHH-HHH-HHHHHcC
Confidence 64 1 232 22456789999999 8999883 211110 00 000001112 334 7899999
Q ss_pred CeEEEEeecCC
Q 030291 161 FTHYKIAPIFG 171 (180)
Q Consensus 161 f~~~~~~~~~~ 171 (180)
|+.++..+..+
T Consensus 264 F~~~e~v~L~P 274 (293)
T PTZ00146 264 LKPKEQLTLEP 274 (293)
T ss_pred CceEEEEecCC
Confidence 99998888754
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.5e-13 Score=104.30 Aligned_cols=106 Identities=17% Similarity=0.284 Sum_probs=83.5
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC---------CCCeeEEecCCcccC--C
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ---------TDNLKYIEGDMFQFI--P 72 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~---------~~~~~~~~~d~~~~~--~ 72 (180)
+++.++ .....+|||+|||+|.++..+++.+|..+++++|.+. +++.+++ ..++++...|..+.. .
T Consensus 220 lL~~lp--~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~ 297 (378)
T PRK15001 220 FMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF 297 (378)
T ss_pred HHHhCC--cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCC
Confidence 445555 3335699999999999999999999999999999976 8888764 136788888886643 3
Q ss_pred CccEEEecccccc---CChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 73 PSDAFFFKTVFHF---FDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 73 ~~D~v~~~~~l~~---~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
+||+|+++-.+|. +.+....++++.+.++|+| ||.++++.
T Consensus 298 ~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~Lkp---GG~L~iV~ 340 (378)
T PRK15001 298 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI---NGELYIVA 340 (378)
T ss_pred CEEEEEECcCcccCccCCHHHHHHHHHHHHHhccc---CCEEEEEE
Confidence 6999999866654 3344455889999999999 99998874
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.9e-13 Score=94.68 Aligned_cols=99 Identities=19% Similarity=0.373 Sum_probs=79.0
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcccCC--CccEEEeccccc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQFIP--PSDAFFFKTVFH 84 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~~~--~~D~v~~~~~l~ 84 (180)
....+|||+|||+|.++..+++..|..+++++|.++ +++.+++ ..+++++..|..+..+ .||+|+++=-++
T Consensus 30 ~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 30 HKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFH 109 (170)
T ss_dssp HTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SB
T ss_pred ccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchh
Confidence 367899999999999999999999998999999966 7777764 2338999999987554 699999987766
Q ss_pred cCCh---HHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 85 FFDD---EDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 85 ~~~~---~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
.-.+ ....+++++..+.|+| ||.+++..
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~---~G~l~lv~ 140 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKP---GGRLFLVI 140 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHhccC---CCEEEEEe
Confidence 5544 2356899999999999 89887754
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.8e-13 Score=102.00 Aligned_cols=100 Identities=19% Similarity=0.266 Sum_probs=79.8
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCcccC-CCccEEEeccccccC
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQFI-PPSDAFFFKTVFHFF 86 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~~~-~~~D~v~~~~~l~~~ 86 (180)
....+|||+|||+|.++..+++.+|..+++++|++. +++.+++ .-..++...|..... ..||+|+++-.+|+.
T Consensus 195 ~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlIvsNPPFH~g 274 (342)
T PRK09489 195 HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMIISNPPFHDG 274 (342)
T ss_pred cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEEEECCCccCC
Confidence 345689999999999999999999989999999976 8888764 223467777775543 369999999888864
Q ss_pred Ch---HHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 87 DD---EDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 87 ~~---~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
.+ .....+++++.+.|+| ||.++++..
T Consensus 275 ~~~~~~~~~~~i~~a~~~Lkp---gG~L~iVan 304 (342)
T PRK09489 275 IQTSLDAAQTLIRGAVRHLNS---GGELRIVAN 304 (342)
T ss_pred ccccHHHHHHHHHHHHHhcCc---CCEEEEEEe
Confidence 32 2345889999999999 999998764
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.1e-12 Score=94.85 Aligned_cols=124 Identities=20% Similarity=0.337 Sum_probs=92.3
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcccC--CCccEEEeccccc-
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQFI--PPSDAFFFKTVFH- 84 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~~--~~~D~v~~~~~l~- 84 (180)
.+.+|||+|||+|.++..+++..+..+++++|+++ +++.+++ ..++++.++|+.+.. ..||+|+++-...
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCc
Confidence 45689999999999999999998888999999965 8877764 346899999997644 3699999853322
Q ss_pred -----cCChH------------------HHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEee
Q 030291 85 -----FFDDE------------------DCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFN 141 (180)
Q Consensus 85 -----~~~~~------------------~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (180)
.+... ....+++++.+.|+| ||.+++..
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~---gG~~~~~~-------------------------- 217 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKP---GGWLLLEI-------------------------- 217 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhccc---CCEEEEEE--------------------------
Confidence 11111 123678999999999 88877621
Q ss_pred cCCcccCHHHHHHHHHHcCCeEEEEeecC
Q 030291 142 VGGKERTEQEWGSLFVNAGFTHYKIAPIF 170 (180)
Q Consensus 142 ~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 170 (180)
.....+++.+.++++||+.+++....
T Consensus 218 ---~~~~~~~~~~~l~~~gf~~v~~~~d~ 243 (251)
T TIGR03534 218 ---GYDQGEAVRALFEAAGFADVETRKDL 243 (251)
T ss_pred ---CccHHHHHHHHHHhCCCCceEEEeCC
Confidence 01234678899999999988776553
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.9e-12 Score=92.79 Aligned_cols=157 Identities=17% Similarity=0.237 Sum_probs=114.8
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCC--CeEEEeeCch-hhccCCC------CCCe-eEEecCCccc------CCCccEE
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPG--IKCTVLDLPH-AVTDMPQ------TDNL-KYIEGDMFQF------IPPSDAF 77 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~--~~~~~~D~~~-~~~~a~~------~~~~-~~~~~d~~~~------~~~~D~v 77 (180)
..+.+||||.||+|......+...|. .++...|.++ .++..++ ..++ +|.++|.++. .|.++++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 56889999999999999988888876 7899999976 7777764 3444 9999999873 3569999
Q ss_pred EeccccccCChHH-HHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCch--hhhhhhhccceeeEeecCCcccCHHHHHH
Q 030291 78 FFKTVFHFFDDED-CLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDR--ELTESKLLFDIFMNFNVGGKERTEQEWGS 154 (180)
Q Consensus 78 ~~~~~l~~~~~~~-~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (180)
++++.++.++|.. ....++.+.+++.| ||.++.+...+.++.... .+........ +.+ +.++..|+.+
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~p---gG~lIyTgQPwHPQle~IAr~LtsHr~g~~-WvM-----RrRsq~EmD~ 284 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEP---GGYLIYTGQPWHPQLEMIARVLTSHRDGKA-WVM-----RRRSQAEMDQ 284 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCC---CcEEEEcCCCCCcchHHHHHHHhcccCCCc-eEE-----EecCHHHHHH
Confidence 9999999999876 44679999999999 888888764443332110 0000000011 111 5579999999
Q ss_pred HHHHcCCeEEE-EeecCCceeEEEEe
Q 030291 155 LFVNAGFTHYK-IAPIFGIKSLIEVY 179 (180)
Q Consensus 155 ~l~~aGf~~~~-~~~~~~~~~~~~~~ 179 (180)
+++++||+-++ .++.+++.++..++
T Consensus 285 Lv~~aGF~K~~q~ID~~GIFTVSlA~ 310 (311)
T PF12147_consen 285 LVEAAGFEKIDQRIDEWGIFTVSLAR 310 (311)
T ss_pred HHHHcCCchhhheeccCCceEEEeec
Confidence 99999999654 45667877776654
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.3e-13 Score=94.97 Aligned_cols=99 Identities=15% Similarity=0.207 Sum_probs=76.9
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCC-cc-c--C--CCccEEEec
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDM-FQ-F--I--PPSDAFFFK 80 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~-~~-~--~--~~~D~v~~~ 80 (180)
++..+|||+|||+|..+..+++.+|+.+++++|+++ +++.+++ ..++.+.++|+ .. + . ..||+|+++
T Consensus 39 ~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 39 NDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 357899999999999999999998888999999965 8887764 36799999998 32 1 2 359999987
Q ss_pred cccccCC------hHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 81 TVFHFFD------DEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 81 ~~l~~~~------~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
....+.. ......+++++.++|+| ||.+++..
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~Lkp---gG~l~i~~ 156 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKP---GGEIHFAT 156 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCC---CCEEEEEc
Confidence 6543221 11134789999999999 89998864
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.8e-14 Score=99.58 Aligned_cols=144 Identities=13% Similarity=0.165 Sum_probs=102.6
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCe-eEEecCCc---c--cCCCccE
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNL-KYIEGDMF---Q--FIPPSDA 76 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~-~~~~~d~~---~--~~~~~D~ 76 (180)
+++...+ ..+..++||+|||||.....+.... .+.+++|+|+ |++++...+-. +..+.+.. . ...++|+
T Consensus 116 emI~~~~--~g~F~~~lDLGCGTGL~G~~lR~~a--~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DL 191 (287)
T COG4976 116 EMIGKAD--LGPFRRMLDLGCGTGLTGEALRDMA--DRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDL 191 (287)
T ss_pred HHHHhcc--CCccceeeecccCcCcccHhHHHHH--hhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccc
Confidence 4455555 5568899999999999999999884 4599999988 99999763322 23333332 1 1236999
Q ss_pred EEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHH
Q 030291 77 FFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLF 156 (180)
Q Consensus 77 v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 156 (180)
|.+..++-|+.+.+ .++.-....|+| ||.+.++.-..+.... +..........+..-..+.+
T Consensus 192 i~AaDVl~YlG~Le--~~~~~aa~~L~~---gGlfaFSvE~l~~~~~-------------f~l~ps~RyAH~~~YVr~~l 253 (287)
T COG4976 192 IVAADVLPYLGALE--GLFAGAAGLLAP---GGLFAFSVETLPDDGG-------------FVLGPSQRYAHSESYVRALL 253 (287)
T ss_pred hhhhhHHHhhcchh--hHHHHHHHhcCC---CceEEEEecccCCCCC-------------eecchhhhhccchHHHHHHH
Confidence 99999999999988 789999999999 8888886533332211 11111111234667789999
Q ss_pred HHcCCeEEEEeec
Q 030291 157 VNAGFTHYKIAPI 169 (180)
Q Consensus 157 ~~aGf~~~~~~~~ 169 (180)
+..||+++++.++
T Consensus 254 ~~~Gl~~i~~~~t 266 (287)
T COG4976 254 AASGLEVIAIEDT 266 (287)
T ss_pred HhcCceEEEeecc
Confidence 9999999988654
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-12 Score=94.43 Aligned_cols=125 Identities=14% Similarity=0.239 Sum_probs=94.1
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCccc-----CCCccEEEe
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQF-----IPPSDAFFF 79 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~-----~~~~D~v~~ 79 (180)
.+...+|||+|||+|..+..++++.+.++++++|+.+ +.+.|++ ..++++.++|+.+. ..+||+|+|
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~ 121 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC 121 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence 4458999999999999999999998889999999966 8888875 68999999999652 225999999
Q ss_pred ccccc----------------cCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecC
Q 030291 80 KTVFH----------------FFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVG 143 (180)
Q Consensus 80 ~~~l~----------------~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (180)
+=-.+ |.......++++.+.+.||| ||.+.++-.
T Consensus 122 NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~---~G~l~~V~r--------------------------- 171 (248)
T COG4123 122 NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKP---GGRLAFVHR--------------------------- 171 (248)
T ss_pred CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccC---CCEEEEEec---------------------------
Confidence 62211 11222345889999999999 999988641
Q ss_pred CcccCHHHHHHHHHHcCCeEEEEeec
Q 030291 144 GKERTEQEWGSLFVNAGFTHYKIAPI 169 (180)
Q Consensus 144 ~~~~~~~~~~~~l~~aGf~~~~~~~~ 169 (180)
.-...++.+++.+.+|...++...
T Consensus 172 --~erl~ei~~~l~~~~~~~k~i~~V 195 (248)
T COG4123 172 --PERLAEIIELLKSYNLEPKRIQFV 195 (248)
T ss_pred --HHHHHHHHHHHHhcCCCceEEEEe
Confidence 123456777777777776665544
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.2e-13 Score=94.24 Aligned_cols=97 Identities=16% Similarity=0.156 Sum_probs=74.6
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCC-CCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccC---C
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFP-GIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFI---P 72 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~---~ 72 (180)
+++.+. ..++.+|||||||+|..+..+++..+ ..+++++|.++ +++.+++ ..++++..+|..+.. .
T Consensus 64 ~~~~l~--~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~ 141 (205)
T PRK13944 64 MCELIE--PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHA 141 (205)
T ss_pred HHHhcC--CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCC
Confidence 344444 56778999999999999998888753 56899999965 7777764 235899999986532 3
Q ss_pred CccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 73 PSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 73 ~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
.||+|++...+++++ +++.+.|+| ||.+++.
T Consensus 142 ~fD~Ii~~~~~~~~~--------~~l~~~L~~---gG~lvi~ 172 (205)
T PRK13944 142 PFDAIIVTAAASTIP--------SALVRQLKD---GGVLVIP 172 (205)
T ss_pred CccEEEEccCcchhh--------HHHHHhcCc---CcEEEEE
Confidence 699999998887654 357789999 8888774
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.5e-12 Score=92.05 Aligned_cols=99 Identities=14% Similarity=0.196 Sum_probs=76.5
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCccc----C--CCccEEEec
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQF----I--PPSDAFFFK 80 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~----~--~~~D~v~~~ 80 (180)
+...++||||||+|.++..+++.+|...++++|++. +++.+++ ..+++++++|+.+. . ..+|.|+++
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 356799999999999999999999999999999966 8877753 35899999999541 2 259998887
Q ss_pred cccccCChH------HHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 81 TVFHFFDDE------DCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 81 ~~l~~~~~~------~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
....+.... ....+++++.++|+| ||.+++..
T Consensus 95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~Lkp---gG~l~~~t 132 (194)
T TIGR00091 95 FPDPWPKKRHNKRRITQPHFLKEYANVLKK---GGVIHFKT 132 (194)
T ss_pred CCCcCCCCCccccccCCHHHHHHHHHHhCC---CCEEEEEe
Confidence 643332211 013689999999999 89888865
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.4e-12 Score=89.18 Aligned_cols=97 Identities=13% Similarity=0.238 Sum_probs=75.4
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCchhhccCCCCCCeeEEecCCccc---------C--CCccEEEec
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQF---------I--PPSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~a~~~~~~~~~~~d~~~~---------~--~~~D~v~~~ 80 (180)
++++.+|||||||+|.++..+++.. +..+++++|++++. ...+++++++|+.+. . ..+|+|+++
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~----~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~ 124 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD----PIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSD 124 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc----CCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecC
Confidence 4678899999999999999998885 45689999997642 235689999998652 2 259999998
Q ss_pred cccccCChHH---------HHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 81 TVFHFFDDED---------CLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 81 ~~l~~~~~~~---------~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
.+.++..++. ...+|+.+.++|+| ||.+++..+
T Consensus 125 ~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~Lkp---GG~~vi~~~ 166 (209)
T PRK11188 125 MAPNMSGTPAVDIPRAMYLVELALDMCRDVLAP---GGSFVVKVF 166 (209)
T ss_pred CCCccCCChHHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEEe
Confidence 8776654321 13689999999999 898888653
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.5e-12 Score=93.15 Aligned_cols=134 Identities=17% Similarity=0.339 Sum_probs=95.0
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcccC--CCccEEEecccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQFI--PPSDAFFFKTVF 83 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~~--~~~D~v~~~~~l 83 (180)
..+..+|||+|||+|.++..++...+..+++++|+++ +++.+++ ..++.+.++|+.+.. ..||+|+++-..
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPY 185 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCc
Confidence 3466789999999999999999999889999999965 7777664 357999999986654 369999985221
Q ss_pred ------ccCCh------------------HHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeE
Q 030291 84 ------HFFDD------------------EDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMN 139 (180)
Q Consensus 84 ------~~~~~------------------~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (180)
+.+.. .....+++++.+.|+| ||.+++ +..
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~---gG~l~~-e~g---------------------- 239 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKP---GGWLLL-EIG---------------------- 239 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhccc---CCEEEE-EEC----------------------
Confidence 11111 1234788899999999 888777 210
Q ss_pred eecCCcccCHHHHHHHHHHcCCeEEEEe-ecCCceeEEEE
Q 030291 140 FNVGGKERTEQEWGSLFVNAGFTHYKIA-PIFGIKSLIEV 178 (180)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~aGf~~~~~~-~~~~~~~~~~~ 178 (180)
....+++.+++++.||..+++. +..+...++.+
T Consensus 240 ------~~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~ 273 (275)
T PRK09328 240 ------YDQGEAVRALLAAAGFADVETRKDLAGRDRVVLG 273 (275)
T ss_pred ------chHHHHHHHHHHhCCCceeEEecCCCCCceEEEE
Confidence 0123568889999999876664 33444444433
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-12 Score=89.57 Aligned_cols=128 Identities=16% Similarity=0.143 Sum_probs=86.1
Q ss_pred EEeeCch-hhccCCC---------CCCeeEEecCCcc-cCC--CccEEEeccccccCChHHHHHHHHHHHHhhccCCCCc
Q 030291 43 TVLDLPH-AVTDMPQ---------TDNLKYIEGDMFQ-FIP--PSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERG 109 (180)
Q Consensus 43 ~~~D~~~-~~~~a~~---------~~~~~~~~~d~~~-~~~--~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G 109 (180)
+|+|+|+ |++.|++ ..+++++++|..+ +.+ +||+|++..+++++++.. +++++++++||| ||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~--~~l~ei~rvLkp---GG 75 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRL--RAMKEMYRVLKP---GS 75 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHH--HHHHHHHHHcCc---Ce
Confidence 4799976 9988743 1368999999955 332 599999999999999887 789999999999 99
Q ss_pred EEEEEEeeeCCCCCchhhhhhhhccc-------eeeEee-c------CCcccCHHHHHHHHHHcCCeEEEEeec-CCcee
Q 030291 110 KVLIIDIVIDEKEDDRELTESKLLFD-------IFMNFN-V------GGKERTEQEWGSLFVNAGFTHYKIAPI-FGIKS 174 (180)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~-~------~~~~~~~~~~~~~l~~aGf~~~~~~~~-~~~~~ 174 (180)
.+++.++..+....... ...+.... ...... . -..+.+.+++.++++++||+.+..... .+..+
T Consensus 76 ~l~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g~~~ 154 (160)
T PLN02232 76 RVSILDFNKSNQSVTTF-MQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGGFMG 154 (160)
T ss_pred EEEEEECCCCChHHHHH-HHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcchHhH
Confidence 99999987544322110 00000000 000000 0 013468899999999999998876655 33444
Q ss_pred EE
Q 030291 175 LI 176 (180)
Q Consensus 175 ~~ 176 (180)
+.
T Consensus 155 ~~ 156 (160)
T PLN02232 155 NL 156 (160)
T ss_pred ee
Confidence 43
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.8e-12 Score=92.95 Aligned_cols=97 Identities=18% Similarity=0.196 Sum_probs=75.2
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCch-hhccCCC------CCCeeEEecCCccc---CCC
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQF---IPP 73 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~---~~~ 73 (180)
+++.+. +.++.+|||||||+|..+..+++.. +..+++++|+++ +++.+++ ..++++.++|.... ...
T Consensus 68 ~~~~l~--~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~ 145 (212)
T PRK13942 68 MCELLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAP 145 (212)
T ss_pred HHHHcC--CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCC
Confidence 445555 6788999999999999999888874 456899999965 8877764 35799999998652 236
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 74 SDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 74 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
||+|++....+++ .+.+.+.|+| ||.+++.
T Consensus 146 fD~I~~~~~~~~~--------~~~l~~~Lkp---gG~lvi~ 175 (212)
T PRK13942 146 YDRIYVTAAGPDI--------PKPLIEQLKD---GGIMVIP 175 (212)
T ss_pred cCEEEECCCcccc--------hHHHHHhhCC---CcEEEEE
Confidence 9999998776544 3456678999 8988774
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.1e-11 Score=84.78 Aligned_cols=122 Identities=20% Similarity=0.293 Sum_probs=89.4
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCC--eeEEecCCcccCC--CccEEEeccc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDN--LKYIEGDMFQFIP--PSDAFFFKTV 82 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~--~~~~~~d~~~~~~--~~D~v~~~~~ 82 (180)
.++.+|||+|||+|.++..++.. +.+++++|.++ +++.+++ ..+ +.+++.|..+..+ .||+|+++..
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence 56778999999999999999888 67899999965 7777753 122 8888898866443 5999998765
Q ss_pred cccCC-------------------hHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecC
Q 030291 83 FHFFD-------------------DEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVG 143 (180)
Q Consensus 83 l~~~~-------------------~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (180)
+.... ......+++++.++|+| ||.+++....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~---gG~~~~~~~~-------------------------- 150 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKP---GGRILLLQSS-------------------------- 150 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCC---CeEEEEEEcc--------------------------
Confidence 43211 11234689999999999 8888775310
Q ss_pred CcccCHHHHHHHHHHcCCeEEEEee
Q 030291 144 GKERTEQEWGSLFVNAGFTHYKIAP 168 (180)
Q Consensus 144 ~~~~~~~~~~~~l~~aGf~~~~~~~ 168 (180)
....+++.++++++||++.....
T Consensus 151 --~~~~~~l~~~~~~~g~~~~~~~~ 173 (188)
T PRK14968 151 --LTGEDEVLEYLEKLGFEAEVVAE 173 (188)
T ss_pred --cCCHHHHHHHHHHCCCeeeeeee
Confidence 11346788999999998876543
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-11 Score=90.16 Aligned_cols=124 Identities=12% Similarity=0.134 Sum_probs=89.6
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-CCCeeEEecCCcccC--CCccEEEeccccccCChHH
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-TDNLKYIEGDMFQFI--PPSDAFFFKTVFHFFDDED 90 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-~~~~~~~~~d~~~~~--~~~D~v~~~~~l~~~~~~~ 90 (180)
...+|||+|||+|.++..++...+..+++++|+++ +++.+++ ..+++++++|+.+.. ..||+|+++-.+++.+..+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d 143 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTD 143 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchh
Confidence 45799999999999999888887678999999966 8888775 467899999997633 3699999988887765432
Q ss_pred H------------------HHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHH
Q 030291 91 C------------------LKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEW 152 (180)
Q Consensus 91 ~------------------~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (180)
. .++++.....|+| +|.+.+.- ...+ .+ ...++.+++
T Consensus 144 ~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p---~G~~~~~y---ss~~-------------~y------~~sl~~~~y 198 (279)
T PHA03411 144 TKDVFEYTGGEFEFKVMTLGQKFADVGYFIVP---TGSAGFAY---SGRP-------------YY------DGTMKSNKY 198 (279)
T ss_pred hhhhhhhccCccccccccHHHHHhhhHheecC---CceEEEEE---eccc-------------cc------cccCCHHHH
Confidence 2 2455666677777 66555541 1110 00 123577889
Q ss_pred HHHHHHcCCeE
Q 030291 153 GSLFVNAGFTH 163 (180)
Q Consensus 153 ~~~l~~aGf~~ 163 (180)
.+++++.||..
T Consensus 199 ~~~l~~~g~~~ 209 (279)
T PHA03411 199 LKWSKQTGLVT 209 (279)
T ss_pred HHHHHhcCcEe
Confidence 99999999864
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.1e-12 Score=95.96 Aligned_cols=91 Identities=14% Similarity=0.254 Sum_probs=71.8
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCC---CeEEEeeCch-hhccCCC-CCCeeEEecCCcc-cC--CCccEEEecccccc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPG---IKCTVLDLPH-AVTDMPQ-TDNLKYIEGDMFQ-FI--PPSDAFFFKTVFHF 85 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~---~~~~~~D~~~-~~~~a~~-~~~~~~~~~d~~~-~~--~~~D~v~~~~~l~~ 85 (180)
....+|||+|||+|.++..+++..+. ..++++|+++ ++..+++ ..++++.++|..+ +. .+||+|++...-
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~~-- 161 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYAP-- 161 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecCC--
Confidence 34578999999999999999887653 4789999976 8888865 5778899998855 33 369999986541
Q ss_pred CChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 86 FDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
..++++.++|+| ||.++++.+
T Consensus 162 -------~~~~e~~rvLkp---gG~li~~~p 182 (272)
T PRK11088 162 -------CKAEELARVVKP---GGIVITVTP 182 (272)
T ss_pred -------CCHHHHHhhccC---CCEEEEEeC
Confidence 336889999999 999988764
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.1e-12 Score=91.95 Aligned_cols=98 Identities=14% Similarity=0.182 Sum_probs=75.4
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHCC-CCeEEEeeCch-hhccCCC------CCCeeEEecCCccc---CC
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFP-GIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQF---IP 72 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~---~~ 72 (180)
.+++.+. +.++.+|||||||+|..+..+++..+ ..+++++|.++ +++.+++ ..++++.++|..+. ..
T Consensus 68 ~~~~~l~--~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~ 145 (215)
T TIGR00080 68 MMTELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLA 145 (215)
T ss_pred HHHHHhC--CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccC
Confidence 3455555 67889999999999999999988853 46799999955 8877764 35799999998653 23
Q ss_pred CccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 73 PSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 73 ~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
.||+|++.....++ .+.+.+.|+| ||.+++.
T Consensus 146 ~fD~Ii~~~~~~~~--------~~~~~~~L~~---gG~lv~~ 176 (215)
T TIGR00080 146 PYDRIYVTAAGPKI--------PEALIDQLKE---GGILVMP 176 (215)
T ss_pred CCCEEEEcCCcccc--------cHHHHHhcCc---CcEEEEE
Confidence 69999988765543 4457789999 8888874
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-11 Score=88.67 Aligned_cols=133 Identities=19% Similarity=0.196 Sum_probs=98.5
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------------------CCCeeEEecCCcccC--
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------------------TDNLKYIEGDMFQFI-- 71 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------------------~~~~~~~~~d~~~~~-- 71 (180)
.+++.+||..|||.|.-...|++. +..++|+|+|+ +++.+.+ ..++++.++|+++..
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 466779999999999999999998 67899999976 7776511 357899999998722
Q ss_pred --CCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCH
Q 030291 72 --PPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTE 149 (180)
Q Consensus 72 --~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
+.||+|+=..++.-++...+.++.+.+.++|+| ||.+++.....+.... . .+....+.
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p---~g~~lLi~l~~~~~~~----------------~-GPPf~v~~ 172 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKP---GGRGLLITLEYPQGEM----------------E-GPPFSVTE 172 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEE---EEEEEEEEEES-CSCS----------------S-SSS----H
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCC---CCcEEEEEEEcCCcCC----------------C-CcCCCCCH
Confidence 269999999999999999999999999999999 8886666554332211 0 11123577
Q ss_pred HHHHHHHHHcCCeEEEEee
Q 030291 150 QEWGSLFVNAGFTHYKIAP 168 (180)
Q Consensus 150 ~~~~~~l~~aGf~~~~~~~ 168 (180)
+++.+++. .+|++..+..
T Consensus 173 ~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 173 EEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp HHHHHHHT-TTEEEEEEEE
T ss_pred HHHHHHhc-CCcEEEEEec
Confidence 89999998 8888776653
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.7e-12 Score=94.35 Aligned_cols=121 Identities=17% Similarity=0.130 Sum_probs=85.6
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCccc-CCCccEEEeccccc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQF-IPPSDAFFFKTVFH 84 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~-~~~~D~v~~~~~l~ 84 (180)
.++.+|||+|||+|.++..+++.. ..+++++|+++ +++.+++ ..++.+...+.... ..+||+|+++...+
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~ 236 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLG-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE 236 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH
Confidence 467899999999999998877653 45899999966 8887764 23455666554232 23699999976543
Q ss_pred cCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEE
Q 030291 85 FFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHY 164 (180)
Q Consensus 85 ~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 164 (180)
....++.++.+.|+| ||.++++.... ...+++.+.+++. |+++
T Consensus 237 -----~l~~ll~~~~~~Lkp---gG~li~sgi~~----------------------------~~~~~v~~~~~~~-f~~~ 279 (288)
T TIGR00406 237 -----VIKELYPQFSRLVKP---GGWLILSGILE----------------------------TQAQSVCDAYEQG-FTVV 279 (288)
T ss_pred -----HHHHHHHHHHHHcCC---CcEEEEEeCcH----------------------------hHHHHHHHHHHcc-Ccee
Confidence 234789999999999 99998866321 1235566677665 8877
Q ss_pred EEeecCCc
Q 030291 165 KIAPIFGI 172 (180)
Q Consensus 165 ~~~~~~~~ 172 (180)
++....++
T Consensus 280 ~~~~~~~W 287 (288)
T TIGR00406 280 EIRQREEW 287 (288)
T ss_pred eEeccCCC
Confidence 77665543
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.35 E-value=8e-12 Score=93.07 Aligned_cols=128 Identities=16% Similarity=0.138 Sum_probs=90.9
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcc-cCCCccEEEecccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQ-FIPPSDAFFFKTVF 83 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~-~~~~~D~v~~~~~l 83 (180)
..++.+|||+|||+|.++...++.. -.+++++|+.+ +++.++. ..++.+. ...+ ....||+|++|-..
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~klG-A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~~~~~~dlvvANI~~ 235 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKLG-AKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDLVEGKFDLVVANILA 235 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHTT-BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCTCCS-EEEEEEES-H
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--EecccccccCCEEEECCCH
Confidence 4567899999999999999988884 23799999954 7777764 3455442 1112 22579999986553
Q ss_pred ccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeE
Q 030291 84 HFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTH 163 (180)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 163 (180)
.....++..+.+.|+| ||.++++..... ..+++.+.+++ ||++
T Consensus 236 -----~vL~~l~~~~~~~l~~---~G~lIlSGIl~~----------------------------~~~~v~~a~~~-g~~~ 278 (295)
T PF06325_consen 236 -----DVLLELAPDIASLLKP---GGYLILSGILEE----------------------------QEDEVIEAYKQ-GFEL 278 (295)
T ss_dssp -----HHHHHHHHHCHHHEEE---EEEEEEEEEEGG----------------------------GHHHHHHHHHT-TEEE
T ss_pred -----HHHHHHHHHHHHhhCC---CCEEEEccccHH----------------------------HHHHHHHHHHC-CCEE
Confidence 3344788889999999 888888765321 23667788877 9999
Q ss_pred EEEeecCCceeEEEEeC
Q 030291 164 YKIAPIFGIKSLIEVYP 180 (180)
Q Consensus 164 ~~~~~~~~~~~~~~~~~ 180 (180)
++.....++.++...+|
T Consensus 279 ~~~~~~~~W~~l~~~Kk 295 (295)
T PF06325_consen 279 VEEREEGEWVALVFKKK 295 (295)
T ss_dssp EEEEEETTEEEEEEEE-
T ss_pred EEEEEECCEEEEEEEeC
Confidence 99999888877766553
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.1e-11 Score=82.45 Aligned_cols=100 Identities=22% Similarity=0.326 Sum_probs=81.0
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcc---cCCCc
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ---FIPPS 74 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~---~~~~~ 74 (180)
.++++. +.++++++|||||+|..+..++...|..+++++|-.+ +++..++ -+|++++.++.-+ ..+++
T Consensus 26 ~ls~L~--~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~ 103 (187)
T COG2242 26 TLSKLR--PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSP 103 (187)
T ss_pred HHHhhC--CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCC
Confidence 345566 7889999999999999999999889999999999843 6655543 6899999999855 34479
Q ss_pred cEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 75 DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 75 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
|.||..+. . +.+ .+|+.+...|+| ||++++..
T Consensus 104 daiFIGGg-~---~i~--~ile~~~~~l~~---ggrlV~na 135 (187)
T COG2242 104 DAIFIGGG-G---NIE--EILEAAWERLKP---GGRLVANA 135 (187)
T ss_pred CEEEECCC-C---CHH--HHHHHHHHHcCc---CCeEEEEe
Confidence 99999887 3 223 789999999999 88888854
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=4e-11 Score=92.68 Aligned_cols=131 Identities=16% Similarity=0.229 Sum_probs=91.7
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCccc-C---CCccEEEecccc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQF-I---PPSDAFFFKTVF 83 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~~-~---~~~D~v~~~~~l 83 (180)
++..+|||+|||+|.++..++...|..+++++|+++ +++.+++ ..++++.++|+.+. . ..||+|+++=-.
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPY 329 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPY 329 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCC
Confidence 455699999999999999999988899999999966 8888875 34789999998653 1 259999995321
Q ss_pred cc-----CC----------------h--HHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEe
Q 030291 84 HF-----FD----------------D--EDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNF 140 (180)
Q Consensus 84 ~~-----~~----------------~--~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (180)
.. .. + .-.+.+++.+.+.|+| ||.+++ +...
T Consensus 330 I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~Lkp---gG~lil-EiG~---------------------- 383 (423)
T PRK14966 330 IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAE---GGFLLL-EHGF---------------------- 383 (423)
T ss_pred CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCC---CcEEEE-EECc----------------------
Confidence 00 00 0 1133667777889999 776654 2211
Q ss_pred ecCCcccCHHHHHHHHHHcCCeEEEEeec-CCceeEE
Q 030291 141 NVGGKERTEQEWGSLFVNAGFTHYKIAPI-FGIKSLI 176 (180)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~aGf~~~~~~~~-~~~~~~~ 176 (180)
...+.+.+++++.||..+++... .+...++
T Consensus 384 ------~Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v 414 (423)
T PRK14966 384 ------DQGAAVRGVLAENGFSGVETLPDLAGLDRVT 414 (423)
T ss_pred ------cHHHHHHHHHHHCCCcEEEEEEcCCCCcEEE
Confidence 13467888899999987776554 4444444
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.8e-11 Score=85.24 Aligned_cols=97 Identities=21% Similarity=0.255 Sum_probs=74.0
Q ss_pred ccccccccCCCeEEEeCCcccHHHHHHHHH-CCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCccc---C-CC
Q 030291 7 KDCRPIFQGLRSMVDVGGGTGAFARIISEA-FPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQF---I-PP 73 (180)
Q Consensus 7 ~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~-~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~---~-~~ 73 (180)
..+. +.++.+|||+|||+|.++..++.. .+..+++++|.++ +++.+++ ..++++..+|..+. . +.
T Consensus 34 ~~l~--~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~ 111 (198)
T PRK00377 34 SKLR--LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEK 111 (198)
T ss_pred HHcC--CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCC
Confidence 3444 678889999999999999988776 4567899999955 8876653 35788888888542 2 46
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEE
Q 030291 74 SDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 74 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
||.|++.... .+. ..+++.+.+.|+| ||.+++
T Consensus 112 ~D~V~~~~~~---~~~--~~~l~~~~~~Lkp---gG~lv~ 143 (198)
T PRK00377 112 FDRIFIGGGS---EKL--KEIISASWEIIKK---GGRIVI 143 (198)
T ss_pred CCEEEECCCc---ccH--HHHHHHHHHHcCC---CcEEEE
Confidence 9999985421 223 3789999999999 888876
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.1e-11 Score=86.76 Aligned_cols=108 Identities=17% Similarity=0.259 Sum_probs=84.8
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcccCC-Ccc
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQFIP-PSD 75 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~~~-~~D 75 (180)
.|++.++ .....+|||+|||.|.++..+++..|..+++.+|.+. +++.+++ ..+..+...|..++.. +||
T Consensus 149 lLl~~l~--~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kfd 226 (300)
T COG2813 149 LLLETLP--PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKFD 226 (300)
T ss_pred HHHHhCC--ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccccccccc
Confidence 3555666 4545599999999999999999999999999999977 7888875 2333567788766544 699
Q ss_pred EEEeccccccCChH---HHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 76 AFFFKTVFHFFDDE---DCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 76 ~v~~~~~l~~~~~~---~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
+|+++=-+|--.+. -..++++...+.|++ ||.+.++..
T Consensus 227 ~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~---gGeL~iVan 267 (300)
T COG2813 227 LIISNPPFHAGKAVVHSLAQEIIAAAARHLKP---GGELWIVAN 267 (300)
T ss_pred EEEeCCCccCCcchhHHHHHHHHHHHHHhhcc---CCEEEEEEc
Confidence 99999888744332 233789999999999 999999875
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2e-11 Score=90.31 Aligned_cols=129 Identities=16% Similarity=0.205 Sum_probs=93.0
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC---CCCee----EEecCCcc-cC-CCccEEEeccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ---TDNLK----YIEGDMFQ-FI-PPSDAFFFKTV 82 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~---~~~~~----~~~~d~~~-~~-~~~D~v~~~~~ 82 (180)
..++.++||+|||+|.++.+.++.. -.+++++|+.+ +++.++. ..++. ....+... .. .+||+|++|=.
T Consensus 160 ~~~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANIL 238 (300)
T COG2264 160 LKKGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANIL 238 (300)
T ss_pred hcCCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhh
Confidence 4689999999999999999999885 33699999955 7777764 22222 22222222 22 36999999763
Q ss_pred cccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCe
Q 030291 83 FHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFT 162 (180)
Q Consensus 83 l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 162 (180)
- .....+...+.+.++| ||.++++..... ..+...+.++++||+
T Consensus 239 A-----~vl~~La~~~~~~lkp---gg~lIlSGIl~~----------------------------q~~~V~~a~~~~gf~ 282 (300)
T COG2264 239 A-----EVLVELAPDIKRLLKP---GGRLILSGILED----------------------------QAESVAEAYEQAGFE 282 (300)
T ss_pred H-----HHHHHHHHHHHHHcCC---CceEEEEeehHh----------------------------HHHHHHHHHHhCCCe
Confidence 2 2334789999999999 899999764221 136677899999999
Q ss_pred EEEEeecCCceeEEEE
Q 030291 163 HYKIAPIFGIKSLIEV 178 (180)
Q Consensus 163 ~~~~~~~~~~~~~~~~ 178 (180)
+++......+.++...
T Consensus 283 v~~~~~~~eW~~i~~k 298 (300)
T COG2264 283 VVEVLEREEWVAIVGK 298 (300)
T ss_pred EeEEEecCCEEEEEEE
Confidence 9999998777666543
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.3e-11 Score=90.12 Aligned_cols=94 Identities=16% Similarity=0.344 Sum_probs=73.0
Q ss_pred CeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccCC--CccEEEec------
Q 030291 17 RSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFIP--PSDAFFFK------ 80 (180)
Q Consensus 17 ~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~~--~~D~v~~~------ 80 (180)
.+|||+|||+|.++..++..+++.+++++|++. ++..+++ ..+++++++|+.+..+ .||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 689999999999999999999889999999965 8877764 2459999999977543 59999986
Q ss_pred -------cccccCCh----------HHHHHHHHHHHHhhccCCCCcEEEE
Q 030291 81 -------TVFHFFDD----------EDCLKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 81 -------~~l~~~~~----------~~~~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
.+..|-|. .....+++++.+.|+| ||.+++
T Consensus 196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~---gG~l~~ 242 (284)
T TIGR00536 196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKP---NGFLVC 242 (284)
T ss_pred chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccC---CCEEEE
Confidence 12222221 1345788999999999 776655
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.8e-11 Score=86.84 Aligned_cols=99 Identities=14% Similarity=0.187 Sum_probs=84.6
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------------------CCCeeEEecCCcccC---
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------------------TDNLKYIEGDMFQFI--- 71 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------------------~~~~~~~~~d~~~~~--- 71 (180)
+++.+||..|||.|..+..|++. +.+++++|+|+ .++.+.+ ..++++.++|+++..
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 35689999999999999999998 66799999977 7766421 458999999998732
Q ss_pred ---CCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 72 ---PPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 72 ---~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
+.||+|+-..++.++++..+.++.+.+.++|+| ||.+++....
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~p---gg~llll~~~ 165 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSN---NTQILLLVME 165 (226)
T ss_pred cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCC---CcEEEEEEEe
Confidence 369999999999999999999999999999999 8988887653
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.4e-11 Score=86.79 Aligned_cols=143 Identities=17% Similarity=0.159 Sum_probs=95.4
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcccC-CCccEEEeccccccCChHHHH
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQFI-PPSDAFFFKTVFHFFDDEDCL 92 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~~-~~~D~v~~~~~l~~~~~~~~~ 92 (180)
...++||||+|.|..+..++..+.. +++.|.|. |..+.++ .+++.+..+-.... ..||+|.|..+|....++.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~--v~aTE~S~~Mr~rL~~-kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P~-- 168 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKE--VYATEASPPMRWRLSK-KGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRPL-- 168 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcce--EEeecCCHHHHHHHHh-CCCeEEehhhhhccCCceEEEeehhhhhccCCHH--
Confidence 4578999999999999999999766 99999987 7665554 45555544433332 3699999999999999998
Q ss_pred HHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhh--ccceeeEeecCCc--ccCHHHHHHHHHHcCCeEEEEee
Q 030291 93 KLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKL--LFDIFMNFNVGGK--ERTEQEWGSLFVNAGFTHYKIAP 168 (180)
Q Consensus 93 ~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~l~~aGf~~~~~~~ 168 (180)
.+|+.++++|+| +|.++++-..+-.+ .. +... ...........+. .-....+.+.|+.+||+++....
T Consensus 169 ~LL~~i~~~l~p---~G~lilAvVlP~~p-yV----E~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr 240 (265)
T PF05219_consen 169 TLLRDIRRALKP---NGRLILAVVLPFRP-YV----EFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWTR 240 (265)
T ss_pred HHHHHHHHHhCC---CCEEEEEEEecccc-cE----EcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEec
Confidence 889999999999 78888865432211 10 0000 0000000000111 11234455889999999988875
Q ss_pred cC
Q 030291 169 IF 170 (180)
Q Consensus 169 ~~ 170 (180)
.+
T Consensus 241 ~P 242 (265)
T PF05219_consen 241 LP 242 (265)
T ss_pred cC
Confidence 54
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.3e-11 Score=90.79 Aligned_cols=96 Identities=18% Similarity=0.355 Sum_probs=73.4
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccCC--CccEEEecc---
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFIP--PSDAFFFKT--- 81 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~~--~~D~v~~~~--- 81 (180)
++.+|||+|||+|.++..+++..++.+++++|+++ +++.+++ ..+++++++|+.+..+ .||+|+++=
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 45789999999999999999999889999999966 8887764 2478999999866443 599999861
Q ss_pred ---ccc-------cCCh----------HHHHHHHHHHHHhhccCCCCcEEEE
Q 030291 82 ---VFH-------FFDD----------EDCLKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 82 ---~l~-------~~~~----------~~~~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
.+. |-+. .....+++.+.+.|+| ||.+++
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~---gG~l~~ 249 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNE---NGVLVV 249 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCC---CCEEEE
Confidence 111 1111 1235779999999999 777665
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.9e-11 Score=93.87 Aligned_cols=99 Identities=11% Similarity=0.175 Sum_probs=75.9
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcc---cC--CCccEEEecc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ---FI--PPSDAFFFKT 81 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~---~~--~~~D~v~~~~ 81 (180)
.....+||||||+|.++..++...|+..++|+|++. ++..+.+ ..|+.++++|+.. .. .++|.|++++
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 445689999999999999999999999999999965 7776653 4689999999843 22 3699999865
Q ss_pred ccccCChH----HHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 82 VFHFFDDE----DCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 82 ~l~~~~~~----~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
..-+.... ....+++++.++|+| ||.+.+..
T Consensus 201 PdPW~KkrHRRlv~~~fL~e~~RvLkp---GG~l~l~T 235 (390)
T PRK14121 201 PVPWDKKPHRRVISEDFLNEALRVLKP---GGTLELRT 235 (390)
T ss_pred CCCccccchhhccHHHHHHHHHHHcCC---CcEEEEEE
Confidence 43221111 124789999999999 89888865
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.9e-12 Score=88.66 Aligned_cols=91 Identities=21% Similarity=0.281 Sum_probs=70.8
Q ss_pred CeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCC--c-----c---cCCCccEEEecccccc
Q 030291 17 RSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDM--F-----Q---FIPPSDAFFFKTVFHF 85 (180)
Q Consensus 17 ~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~--~-----~---~~~~~D~v~~~~~l~~ 85 (180)
+.++|+|||+|..+..+++.+.. ++++|+++ |++.+++..++++...-. . + ...+.|+|++..++|+
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~--VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HW 112 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKE--VIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHW 112 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhh--heeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHh
Confidence 37899999999999989998765 99999976 999999866665554322 1 1 1236999999999998
Q ss_pred CChHHHHHHHHHHHHhhccCCCCc-EEEEEE
Q 030291 86 FDDEDCLKLLKKCREAIASNGERG-KVLIID 115 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~L~p~~~~G-~~~~~~ 115 (180)
+..+ .+.+.+.++||+ .| .+.+=.
T Consensus 113 Fdle---~fy~~~~rvLRk---~Gg~iavW~ 137 (261)
T KOG3010|consen 113 FDLE---RFYKEAYRVLRK---DGGLIAVWN 137 (261)
T ss_pred hchH---HHHHHHHHHcCC---CCCEEEEEE
Confidence 8766 889999999999 55 544433
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.2e-11 Score=82.89 Aligned_cols=124 Identities=17% Similarity=0.153 Sum_probs=91.1
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccC---CCccEEEecccc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFI---PPSDAFFFKTVF 83 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~---~~~D~v~~~~~l 83 (180)
...+|||+|||.|.+...|++..-....+++|.++ +++-|+. ...|+|.+.|+.++. +.||+|+-.+++
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTL 146 (227)
T ss_pred cccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCce
Confidence 34499999999999999999885344589999976 7766653 344999999998742 359998876655
Q ss_pred ccCC------hHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHH
Q 030291 84 HFFD------DEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFV 157 (180)
Q Consensus 84 ~~~~------~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 157 (180)
..+. +.....++..+.+.|+| ||.++|..++ +|.+|+.+.++
T Consensus 147 DAisLs~d~~~~r~~~Y~d~v~~ll~~---~gifvItSCN-----------------------------~T~dELv~~f~ 194 (227)
T KOG1271|consen 147 DAISLSPDGPVGRLVVYLDSVEKLLSP---GGIFVITSCN-----------------------------FTKDELVEEFE 194 (227)
T ss_pred eeeecCCCCcccceeeehhhHhhccCC---CcEEEEEecC-----------------------------ccHHHHHHHHh
Confidence 4431 12224678899999999 8888886532 46688888888
Q ss_pred HcCCeEEEEeecC
Q 030291 158 NAGFTHYKIAPIF 170 (180)
Q Consensus 158 ~aGf~~~~~~~~~ 170 (180)
..||+....+..+
T Consensus 195 ~~~f~~~~tvp~p 207 (227)
T KOG1271|consen 195 NFNFEYLSTVPTP 207 (227)
T ss_pred cCCeEEEEeeccc
Confidence 8888876655443
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-10 Score=84.45 Aligned_cols=100 Identities=19% Similarity=0.203 Sum_probs=72.6
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCcccC--CCccEEEeccccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQFI--PPSDAFFFKTVFH 84 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~~~--~~~D~v~~~~~l~ 84 (180)
+.+..+|||+|||+|.++..+++.. ..+++++|+++ ++..+++ ..++++..+|+.+.. ..||+|+++-...
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCC
Confidence 4567899999999999999888763 34899999965 7776654 235788888886533 3699999974322
Q ss_pred cCCh-------------------HHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 85 FFDD-------------------EDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 85 ~~~~-------------------~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
.... .....+++++.++|+| ||.+++...
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~---gG~l~~~~~ 160 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAP---GGSLLLVQS 160 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCC---CcEEEEEEe
Confidence 1111 1134678899999999 899887643
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.3e-11 Score=84.81 Aligned_cols=101 Identities=17% Similarity=0.276 Sum_probs=75.6
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcc---cC-CC
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ---FI-PP 73 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~---~~-~~ 73 (180)
+++.+. ..++.+|||+|||+|.++..+++..++.+++++|+++ +++.+++ ..++++..+|..+ .. +.
T Consensus 32 l~~~l~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~ 109 (196)
T PRK07402 32 LISQLR--LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPA 109 (196)
T ss_pred HHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCC
Confidence 344444 5678899999999999999998888888999999955 8777764 3578999988854 22 34
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 74 SDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 74 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
+|.++.... .+ ...+++++.+.|+| ||.+++...
T Consensus 110 ~d~v~~~~~----~~--~~~~l~~~~~~Lkp---gG~li~~~~ 143 (196)
T PRK07402 110 PDRVCIEGG----RP--IKEILQAVWQYLKP---GGRLVATAS 143 (196)
T ss_pred CCEEEEECC----cC--HHHHHHHHHHhcCC---CeEEEEEee
Confidence 677655321 12 34789999999999 888888754
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.7e-11 Score=88.67 Aligned_cols=98 Identities=17% Similarity=0.319 Sum_probs=74.9
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCc-hhhccCCC-------CCCeeEEecCCccc----CCCccEEEecc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLP-HAVTDMPQ-------TDNLKYIEGDMFQF----IPPSDAFFFKT 81 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~-~~~~~a~~-------~~~~~~~~~d~~~~----~~~~D~v~~~~ 81 (180)
+.+.+|||||||+|.++..+++..|..+++++|++ ++++.+++ .++++++.+|..+. ...||+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 45789999999999999999999999999999994 48777764 36899999998542 23699999753
Q ss_pred cc-ccCCh-HHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 82 VF-HFFDD-EDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 82 ~l-~~~~~-~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
.- ...+. ....++++++++.|+| ||.+++.
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~p---gGvlvin 176 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSS---DGIFVVN 176 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCC---CcEEEEE
Confidence 11 11111 1124899999999999 7887774
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.24 E-value=3e-10 Score=91.09 Aligned_cols=123 Identities=15% Similarity=0.331 Sum_probs=88.5
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccCC--CccEEEeccc--
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFIP--PSDAFFFKTV-- 82 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~~--~~D~v~~~~~-- 82 (180)
++.+|||+|||+|.++..++...|+.+++++|+++ +++.+++ ..++++.++|+.+..+ .||+|+++--
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCC
Confidence 34689999999999999999998899999999966 8887764 2478999999866443 5999998421
Q ss_pred ------------cccCCh----------HHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEe
Q 030291 83 ------------FHFFDD----------EDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNF 140 (180)
Q Consensus 83 ------------l~~~~~----------~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (180)
..|-+. .....+++.+.+.|+| ||.+++ +...
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~---gG~l~l-Eig~---------------------- 271 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKP---NGKIIL-EIGF---------------------- 271 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccC---CCEEEE-EECC----------------------
Confidence 111111 1234578888999999 887765 3210
Q ss_pred ecCCcccCHHHHHHHHHHcCCeEEEEeec
Q 030291 141 NVGGKERTEQEWGSLFVNAGFTHYKIAPI 169 (180)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 169 (180)
...+.+.+++++.||..+++...
T Consensus 272 ------~q~~~v~~~~~~~g~~~~~~~~D 294 (506)
T PRK01544 272 ------KQEEAVTQIFLDHGYNIESVYKD 294 (506)
T ss_pred ------chHHHHHHHHHhcCCCceEEEec
Confidence 12356778888889887766544
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.6e-11 Score=89.59 Aligned_cols=94 Identities=19% Similarity=0.360 Sum_probs=72.8
Q ss_pred CeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccCC--CccEEEecc-----
Q 030291 17 RSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFIP--PSDAFFFKT----- 81 (180)
Q Consensus 17 ~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~~--~~D~v~~~~----- 81 (180)
.+|||+|||+|.++..++..+|+.+++++|+++ +++.+++ ..++++.++|+.+..+ .||+|+++=
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 689999999999999999999999999999966 8887764 2469999999866443 599999861
Q ss_pred -cc-------ccCCh----------HHHHHHHHHHHHhhccCCCCcEEEE
Q 030291 82 -VF-------HFFDD----------EDCLKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 82 -~l-------~~~~~----------~~~~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
.+ +|-+. .....+++++.+.|+| ||.+++
T Consensus 215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~p---gG~l~~ 261 (307)
T PRK11805 215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTE---DGVLVV 261 (307)
T ss_pred cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCC---CCEEEE
Confidence 11 11111 1234789999999999 777766
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.24 E-value=2e-10 Score=80.94 Aligned_cols=96 Identities=16% Similarity=0.298 Sum_probs=70.4
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCchhhccCCCCCCeeEEecCCccc---------C--CCccEEEec
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQF---------I--PPSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~a~~~~~~~~~~~d~~~~---------~--~~~D~v~~~ 80 (180)
++++.+|||+|||+|.++..+++.+ +..+++++|++++. ...++++.++|+.+. . ..+|+|++.
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~ 105 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSD 105 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcC
Confidence 5778899999999999999988875 55689999997633 235678888887541 1 259999986
Q ss_pred ccccc-----CCh----HHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 81 TVFHF-----FDD----EDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 81 ~~l~~-----~~~----~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
...+. ... .....++..+.++|+| ||.+++..
T Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lvi~~ 146 (188)
T TIGR00438 106 AAPNISGYWDIDHLRSIDLVELALDIAKEVLKP---KGNFVVKV 146 (188)
T ss_pred CCCCCCCCccccHHHHHHHHHHHHHHHHHHccC---CCEEEEEE
Confidence 54221 111 1234789999999999 88888853
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.4e-11 Score=85.35 Aligned_cols=95 Identities=12% Similarity=0.133 Sum_probs=71.9
Q ss_pred cccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcccC---CCcc
Q 030291 6 VKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQFI---PPSD 75 (180)
Q Consensus 6 ~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~~---~~~D 75 (180)
++.+. ..+..+|||+|||+|..+..+++.. .+++++|.++ ++..+++ ..++++..+|..+.. ..||
T Consensus 71 ~~~l~--~~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 146 (212)
T PRK00312 71 TELLE--LKPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFD 146 (212)
T ss_pred HHhcC--CCCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcC
Confidence 34444 5678899999999999998877774 3799999965 7776654 346899999985532 3699
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 76 AFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 76 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
+|++...++++ .+.+.+.|+| ||.+++.-
T Consensus 147 ~I~~~~~~~~~--------~~~l~~~L~~---gG~lv~~~ 175 (212)
T PRK00312 147 RILVTAAAPEI--------PRALLEQLKE---GGILVAPV 175 (212)
T ss_pred EEEEccCchhh--------hHHHHHhcCC---CcEEEEEE
Confidence 99998776544 4557789999 88888754
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.5e-11 Score=77.22 Aligned_cols=96 Identities=18% Similarity=0.186 Sum_probs=72.7
Q ss_pred CCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCccc-----CCCccEEEeccc
Q 030291 16 LRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQF-----IPPSDAFFFKTV 82 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~-----~~~~D~v~~~~~ 82 (180)
+.+|||+|||+|.++..+++.. ..+++++|+++ .++.++. ..++++.++|..+. .++||+|+++--
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 3589999999999999999997 68999999955 6666653 46899999999652 246999999765
Q ss_pred cccCC------hHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 83 FHFFD------DEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 83 l~~~~------~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
..... ......+++++.+.|+| ||.+++.-
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~---gG~~~~~~ 115 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKP---GGVLVFIT 115 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCC---CeEEEEEe
Confidence 44321 11234889999999999 88887754
|
... |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.6e-11 Score=73.83 Aligned_cols=92 Identities=25% Similarity=0.420 Sum_probs=72.9
Q ss_pred eEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCC------CCCCeeEEecCCccc----CCCccEEEeccccccC
Q 030291 18 SMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMP------QTDNLKYIEGDMFQF----IPPSDAFFFKTVFHFF 86 (180)
Q Consensus 18 ~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~------~~~~~~~~~~d~~~~----~~~~D~v~~~~~l~~~ 86 (180)
+++|+|||.|..+..+++ .+..+++++|+++ ....++ ...++++...|..+. .+.+|+|++..+++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999888 5578999999965 555554 256788889888663 2369999999999884
Q ss_pred ChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 87 DDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 87 ~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
......+++.+.+.++| +|.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~~---~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKP---GGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCC---CCEEEEE
Confidence 33344889999999999 8888775
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.9e-10 Score=81.77 Aligned_cols=144 Identities=10% Similarity=0.181 Sum_probs=90.3
Q ss_pred cccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----C-----------------------------
Q 030291 12 IFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----T----------------------------- 57 (180)
Q Consensus 12 ~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----~----------------------------- 57 (180)
.+-.+..+|||||..|.++..+++.+....+.|+|+.. .++.|++ .
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~ 134 (288)
T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD 134 (288)
T ss_pred cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccc
Confidence 34567889999999999999999999777899999955 7777764 0
Q ss_pred ---------------CCeeEEecCCcc-cCCCccEEEeccccc----cCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 58 ---------------DNLKYIEGDMFQ-FIPPSDAFFFKTVFH----FFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 58 ---------------~~~~~~~~d~~~-~~~~~D~v~~~~~l~----~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
.|+.+...|+++ ..+.||+|+|.++-. .+.|+....+++++.+.|.| ||.+++ ++
T Consensus 135 ~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~p---gGiLvv-EP- 209 (288)
T KOG2899|consen 135 RAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHP---GGILVV-EP- 209 (288)
T ss_pred ccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCc---CcEEEE-cC-
Confidence 111111122221 234699999865432 34678889999999999999 555555 42
Q ss_pred eCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHc--CCeEEE
Q 030291 118 IDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNA--GFTHYK 165 (180)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a--Gf~~~~ 165 (180)
.++ ..+.......+.... ....-...++.+.+++.+. ||+-++
T Consensus 210 --QpW--ksY~kaar~~e~~~~-ny~~i~lkp~~f~~~l~q~~vgle~~e 254 (288)
T KOG2899|consen 210 --QPW--KSYKKAARRSEKLAA-NYFKIFLKPEDFEDWLNQIVVGLESVE 254 (288)
T ss_pred --Cch--HHHHHHHHHHHHhhc-CccceecCHHHHHhhhhhhhhheeeec
Confidence 221 112222222211111 1111345788899998887 565443
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.7e-11 Score=89.62 Aligned_cols=122 Identities=17% Similarity=0.051 Sum_probs=86.0
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcc-cC--CCccEEEeccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ-FI--PPSDAFFFKTV 82 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~-~~--~~~D~v~~~~~ 82 (180)
.+++.+|||+|||+|.++...+.. +.+++++|++. |+..++. ..++.+.++|+.+ +. ..||+|+++-.
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP 257 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence 567889999999999998776654 67899999965 8776653 2347888999865 22 36999999632
Q ss_pred cc-------cCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHH
Q 030291 83 FH-------FFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSL 155 (180)
Q Consensus 83 l~-------~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (180)
.. +.......++++++.++|+| ||++++..+. ..++.+.
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~---gG~lv~~~~~-------------------------------~~~~~~~ 303 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKS---EGWIVYAVPT-------------------------------RIDLESL 303 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccC---CcEEEEEEcC-------------------------------CCCHHHH
Confidence 11 11112245889999999999 8988875421 1235567
Q ss_pred HHHcCCeEEEEeecCC
Q 030291 156 FVNAGFTHYKIAPIFG 171 (180)
Q Consensus 156 l~~aGf~~~~~~~~~~ 171 (180)
++++|| ++......-
T Consensus 304 ~~~~g~-i~~~~~~~~ 318 (329)
T TIGR01177 304 AEDAFR-VVKRFEVRV 318 (329)
T ss_pred HhhcCc-chheeeeee
Confidence 888899 776665533
|
This family is found exclusively in the Archaea. |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.9e-11 Score=83.33 Aligned_cols=98 Identities=11% Similarity=0.168 Sum_probs=78.3
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeC-chhhccCCC------CCCeeEEecCCccc---CCC
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDL-PHAVTDMPQ------TDNLKYIEGDMFQF---IPP 73 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~------~~~~~~~~~d~~~~---~~~ 73 (180)
.+++.+. ++++.+|||||||+|+.+.-+++... +++.+|. ++..+.|++ ..|+.+.++|-..- .+.
T Consensus 63 ~m~~~L~--~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aP 138 (209)
T COG2518 63 RMLQLLE--LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAP 138 (209)
T ss_pred HHHHHhC--CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCC
Confidence 3556666 78899999999999999999999853 7999998 446777764 56799999999653 346
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 74 SDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 74 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
||.|++......+|.. +.+.|++ ||++++-.-
T Consensus 139 yD~I~Vtaaa~~vP~~--------Ll~QL~~---gGrlv~PvG 170 (209)
T COG2518 139 YDRIIVTAAAPEVPEA--------LLDQLKP---GGRLVIPVG 170 (209)
T ss_pred cCEEEEeeccCCCCHH--------HHHhccc---CCEEEEEEc
Confidence 9999999998877765 4568999 899888553
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-10 Score=86.80 Aligned_cols=98 Identities=16% Similarity=0.241 Sum_probs=74.4
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----------CCCeeEEecCCccc----CCCccEE
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----------TDNLKYIEGDMFQF----IPPSDAF 77 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----------~~~~~~~~~d~~~~----~~~~D~v 77 (180)
+++.+||+||||+|..+..+++..+..+++++|+++ +++.+++ .++++++.+|.... ...||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 467899999999999999998875567899999955 8877764 35789999998652 2369999
Q ss_pred EeccccccCChH--HHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 78 FFKTVFHFFDDE--DCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 78 ~~~~~l~~~~~~--~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
++...-.+.+.. ...++++.+++.|+| ||.+++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~---gGvlv~~ 190 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKE---DGIFVAQ 190 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCC---CcEEEEe
Confidence 986543332222 134889999999999 7776653
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.8e-10 Score=82.35 Aligned_cols=96 Identities=20% Similarity=0.279 Sum_probs=71.3
Q ss_pred CCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC---CCCeeEEecCCcccC-----CCccEEEecccc---
Q 030291 16 LRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ---TDNLKYIEGDMFQFI-----PPSDAFFFKTVF--- 83 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~---~~~~~~~~~d~~~~~-----~~~D~v~~~~~l--- 83 (180)
..+|||+|||+|.++..+++..++.+++++|+++ +++.+++ ..+.++.++|+.+.. +.||+|+++=-.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence 4589999999999999999988888999999965 8887775 233678899986532 359999986321
Q ss_pred ---ccCChH------------------HHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 84 ---HFFDDE------------------DCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 84 ---~~~~~~------------------~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
...++. ....+++.+.+.|+| ||.+++.
T Consensus 167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~---gG~l~l~ 215 (251)
T TIGR03704 167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAP---GGHLLVE 215 (251)
T ss_pred hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCC---CCEEEEE
Confidence 111111 134778888899999 8887763
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.6e-11 Score=83.40 Aligned_cols=97 Identities=14% Similarity=0.258 Sum_probs=68.7
Q ss_pred CCCeEEEeCCcccHHH--H--HHHHH----CC-CCeEEEeeCch-hhccCCC----------------------------
Q 030291 15 GLRSMVDVGGGTGAFA--R--IISEA----FP-GIKCTVLDLPH-AVTDMPQ---------------------------- 56 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~--~--~l~~~----~~-~~~~~~~D~~~-~~~~a~~---------------------------- 56 (180)
..-+|+..||++|.=. . .+.+. .+ ..++++.|++. +++.|++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 5679999999999632 2 23331 12 46899999966 8888862
Q ss_pred ------CCCeeEEecCCcc-cC--CCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 57 ------TDNLKYIEGDMFQ-FI--PPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 57 ------~~~~~~~~~d~~~-~~--~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
..+++|...|..+ .. +.||+|+|..++-|+.++.+.++++++.+.|+| ||.+++.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~p---gG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKP---GGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEE---EEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCC---CCEEEEe
Confidence 3679999999977 22 269999999999999999999999999999999 7777774
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.2e-11 Score=83.79 Aligned_cols=99 Identities=13% Similarity=0.202 Sum_probs=71.6
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCch-hhccCCC------CCCeeEEecCCcccC---C
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQFI---P 72 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~~---~ 72 (180)
.+++.+. ++++.+|||||||+|+.+..++... +..+++++|..+ ..+.|++ ..++.+.++|..... .
T Consensus 63 ~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~a 140 (209)
T PF01135_consen 63 RMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEA 140 (209)
T ss_dssp HHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-
T ss_pred HHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCC
Confidence 4566676 8899999999999999999998874 445789999854 7777764 568999999986532 3
Q ss_pred CccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 73 PSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 73 ~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
.||.|++......++.. +.+.|++ ||++++.-
T Consensus 141 pfD~I~v~~a~~~ip~~--------l~~qL~~---gGrLV~pi 172 (209)
T PF01135_consen 141 PFDRIIVTAAVPEIPEA--------LLEQLKP---GGRLVAPI 172 (209)
T ss_dssp SEEEEEESSBBSS--HH--------HHHTEEE---EEEEEEEE
T ss_pred CcCEEEEeeccchHHHH--------HHHhcCC---CcEEEEEE
Confidence 69999999888655433 5667999 78777743
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3e-09 Score=79.22 Aligned_cols=122 Identities=17% Similarity=0.276 Sum_probs=86.5
Q ss_pred eEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----C-CCeeEEecCCcccCC-CccEEEecc--cccc--
Q 030291 18 SMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----T-DNLKYIEGDMFQFIP-PSDAFFFKT--VFHF-- 85 (180)
Q Consensus 18 ~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~-~~~~~~~~d~~~~~~-~~D~v~~~~--~l~~-- 85 (180)
+|||+|||+|..+..++...|.++++++|++. +++.|++ . .++.++.+|.++... .||+|++|= .-..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~ 192 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP 192 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence 79999999999999999999999999999965 8877764 2 456677778877554 699999851 1111
Q ss_pred -C-C---------------h--HHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcc
Q 030291 86 -F-D---------------D--EDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKE 146 (180)
Q Consensus 86 -~-~---------------~--~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (180)
. + + .....++..+.+.|+| ||.+++ +.. .
T Consensus 193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~---~g~l~l-e~g----------------------------~ 240 (280)
T COG2890 193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKP---GGVLIL-EIG----------------------------L 240 (280)
T ss_pred ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCC---CcEEEE-EEC----------------------------C
Confidence 1 0 0 1345678888889998 555444 321 1
Q ss_pred cCHHHHHHHHHHcC-CeEEEEeecCC
Q 030291 147 RTEQEWGSLFVNAG-FTHYKIAPIFG 171 (180)
Q Consensus 147 ~~~~~~~~~l~~aG-f~~~~~~~~~~ 171 (180)
...+.+.+++.+.| |..+.......
T Consensus 241 ~q~~~v~~~~~~~~~~~~v~~~~d~~ 266 (280)
T COG2890 241 TQGEAVKALFEDTGFFEIVETLKDLF 266 (280)
T ss_pred CcHHHHHHHHHhcCCceEEEEEecCC
Confidence 13477889999999 67666655533
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.3e-09 Score=87.74 Aligned_cols=98 Identities=14% Similarity=0.163 Sum_probs=73.3
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------------CCCeeEEecCCccc----CCCcc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------------TDNLKYIEGDMFQF----IPPSD 75 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------------~~~~~~~~~d~~~~----~~~~D 75 (180)
+++++|||||||+|..+..+++..+..+++.+|+++ +++.+++ .++++++.+|..+. ..+||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 567899999999999999988754337999999955 8887765 25789999998652 23699
Q ss_pred EEEeccccccCCh---HHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 76 AFFFKTVFHFFDD---EDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 76 ~v~~~~~l~~~~~---~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
+|++...-...+. ....++++.+++.|+| ||.+++.
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~p---gG~lv~~ 414 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAP---DGLLVVQ 414 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCC---CeEEEEe
Confidence 9999754322221 1123689999999999 7777664
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.6e-10 Score=84.46 Aligned_cols=99 Identities=12% Similarity=0.140 Sum_probs=74.6
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------------CCCeeEEecCCccc----CCCc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------------TDNLKYIEGDMFQF----IPPS 74 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------------~~~~~~~~~d~~~~----~~~~ 74 (180)
..++.+||+||||+|..++.+++..+..+++.+|+++ +++.|++ .++++++.+|..+. ...|
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 3567899999999999999888876667999999955 8887763 46899999998662 2369
Q ss_pred cEEEecccc---ccCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 75 DAFFFKTVF---HFFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 75 D~v~~~~~l---~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
|+|++...- .........++++.+++.|+| ||.++..
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkP---gGV~V~Q 267 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTE---DGAFVCQ 267 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCC---CcEEEEe
Confidence 999986421 111222335799999999999 7776654
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.6e-10 Score=85.48 Aligned_cols=92 Identities=16% Similarity=0.248 Sum_probs=69.9
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCC-CeEEEeeCch-hhccCCC------CCCeeEEecCCccc---CCCccEEEecc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPG-IKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQF---IPPSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~-~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~---~~~~D~v~~~~ 81 (180)
++++.+|||||||+|.++..+++..+. ..++++|.++ +++.+++ ..++.+.++|..+. ...||+|++..
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~ 157 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTV 157 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECC
Confidence 567789999999999999999888643 4799999965 7776653 35788899987542 23699999976
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
.+.++ ...+.+.|+| ||.+++..
T Consensus 158 g~~~i--------p~~~~~~Lkp---gG~Lvv~~ 180 (322)
T PRK13943 158 GVDEV--------PETWFTQLKE---GGRVIVPI 180 (322)
T ss_pred chHHh--------HHHHHHhcCC---CCEEEEEe
Confidence 65533 3346678999 89887753
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.5e-11 Score=84.37 Aligned_cols=143 Identities=16% Similarity=0.204 Sum_probs=98.5
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCCC--C--CeeEEecCCcc---cCCCccEEEeccccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQT--D--NLKYIEGDMFQ---FIPPSDAFFFKTVFH 84 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~--~--~~~~~~~d~~~---~~~~~D~v~~~~~l~ 84 (180)
.+....++|||||.|.....+.... --+++-+|.|. |++.++.. + .....++|... ...++|+|+++..+|
T Consensus 70 kk~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslH 148 (325)
T KOG2940|consen 70 KKSFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLH 148 (325)
T ss_pred hhhCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhh
Confidence 3556789999999999999998885 44689999977 99999862 3 34566666622 223699999999999
Q ss_pred cCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEee-----cC-CcccCHHHHHHHHHH
Q 030291 85 FFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFN-----VG-GKERTEQEWGSLFVN 158 (180)
Q Consensus 85 ~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~l~~ 158 (180)
+..+.. ..+.+|..+||| +|.++ ......+. +++.+....+..+.. .+ ..+....++..+|..
T Consensus 149 W~NdLP--g~m~~ck~~lKP---Dg~Fi-asmlggdT-----LyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~r 217 (325)
T KOG2940|consen 149 WTNDLP--GSMIQCKLALKP---DGLFI-ASMLGGDT-----LYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTR 217 (325)
T ss_pred hhccCc--hHHHHHHHhcCC---Cccch-hHHhcccc-----HHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhh
Confidence 998877 779999999999 55544 33333332 223322222211111 11 234456889999999
Q ss_pred cCCeEEEEe
Q 030291 159 AGFTHYKIA 167 (180)
Q Consensus 159 aGf~~~~~~ 167 (180)
|||....+.
T Consensus 218 AGF~m~tvD 226 (325)
T KOG2940|consen 218 AGFSMLTVD 226 (325)
T ss_pred cCcccceec
Confidence 999876654
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.9e-10 Score=77.59 Aligned_cols=80 Identities=19% Similarity=0.412 Sum_probs=62.6
Q ss_pred CcccccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----CCCeeEEecCCccc-CC--
Q 030291 1 MATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----TDNLKYIEGDMFQF-IP-- 72 (180)
Q Consensus 1 ~~~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----~~~~~~~~~d~~~~-~~-- 72 (180)
+++.+++.+. +.++.+|||||||+|.++..+++. ..+++++|+++ +++.+++ ..+++++++|+.+. .+
T Consensus 1 ~~~~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~ 76 (169)
T smart00650 1 VIDKIVRAAN--LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKL 76 (169)
T ss_pred CHHHHHHhcC--CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCcccc
Confidence 3456777777 778889999999999999999988 56899999965 7777654 35799999999662 22
Q ss_pred CccEEEeccccc
Q 030291 73 PSDAFFFKTVFH 84 (180)
Q Consensus 73 ~~D~v~~~~~l~ 84 (180)
.+|.|+++-..+
T Consensus 77 ~~d~vi~n~Py~ 88 (169)
T smart00650 77 QPYKVVGNLPYN 88 (169)
T ss_pred CCCEEEECCCcc
Confidence 489998875543
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.4e-09 Score=80.77 Aligned_cols=98 Identities=15% Similarity=0.188 Sum_probs=72.4
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----------CCCeeEEecCCccc----CCCccEEE
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----------TDNLKYIEGDMFQF----IPPSDAFF 78 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----------~~~~~~~~~d~~~~----~~~~D~v~ 78 (180)
+++.+||+||||+|..+..+++..+..+++++|+++ +++.+++ ..++++...|.... ...||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 456799999999999999888876567899999965 7666653 25788888887542 34699999
Q ss_pred eccccccCChH--HHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 79 FKTVFHFFDDE--DCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 79 ~~~~l~~~~~~--~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
+.......+.. ...++++.+++.|+| ||.+++.
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~p---gG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNE---DGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCC---CcEEEEc
Confidence 86542222221 135889999999999 7887775
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.4e-09 Score=91.54 Aligned_cols=65 Identities=22% Similarity=0.260 Sum_probs=54.1
Q ss_pred CCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----------------------CCCeeEEecCCcccCC
Q 030291 16 LRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----------------------TDNLKYIEGDMFQFIP 72 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----------------------~~~~~~~~~d~~~~~~ 72 (180)
+.+|||+|||+|.++..+++.++..+++++|++. +++.+++ ..+++++++|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 4689999999999999999999888999999966 8877743 1369999999977442
Q ss_pred ----CccEEEec
Q 030291 73 ----PSDAFFFK 80 (180)
Q Consensus 73 ----~~D~v~~~ 80 (180)
.||+|+++
T Consensus 199 ~~~~~fDlIVSN 210 (1082)
T PLN02672 199 DNNIELDRIVGC 210 (1082)
T ss_pred ccCCceEEEEEC
Confidence 49999985
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3e-09 Score=78.20 Aligned_cols=97 Identities=15% Similarity=0.290 Sum_probs=78.3
Q ss_pred CCCeEEEeCCcccH----HHHHHHHHCC-----CCeEEEeeCch-hhccCCC----------------------------
Q 030291 15 GLRSMVDVGGGTGA----FARIISEAFP-----GIKCTVLDLPH-AVTDMPQ---------------------------- 56 (180)
Q Consensus 15 ~~~~iLdiG~G~G~----~~~~l~~~~~-----~~~~~~~D~~~-~~~~a~~---------------------------- 56 (180)
..-+|...||++|. ++..+.+.++ ..++++.|++. +++.|+.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 47799999999995 3444455554 57899999966 8888863
Q ss_pred -------CCCeeEEecCCcccC---CCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 57 -------TDNLKYIEGDMFQFI---PPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 57 -------~~~~~~~~~d~~~~~---~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
...|.|...|..++. +.||+|+|..++-|+..+.+.+++.+.+..|+| ||.+++-
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~---gG~LflG 240 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKP---GGLLFLG 240 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCC---CCEEEEc
Confidence 245778888886633 259999999999999999999999999999999 8888874
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.01 E-value=3e-09 Score=80.10 Aligned_cols=97 Identities=14% Similarity=0.136 Sum_probs=72.8
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----------CCCeeEEecCCcc---c--CCCccEE
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----------TDNLKYIEGDMFQ---F--IPPSDAF 77 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----------~~~~~~~~~d~~~---~--~~~~D~v 77 (180)
+++.+||+||||.|..++.+++..+..+++.+|+.+ +++.+++ .+|++++.+|... . ...||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 578999999999999999998775456899999965 7777664 3589999999743 2 2369999
Q ss_pred EeccccccCChH--HHHHHHHHHHHhhccCCCCcEEEE
Q 030291 78 FFKTVFHFFDDE--DCLKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 78 ~~~~~l~~~~~~--~~~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
++...-...+.. ...++++.+++.|+| ||.++.
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~p---gGvlv~ 204 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRP---GGVVCT 204 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCC---CcEEEE
Confidence 985443222221 234789999999999 777755
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.1e-09 Score=83.14 Aligned_cols=105 Identities=17% Similarity=0.136 Sum_probs=77.1
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCccc-----CCCccEEEecc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQF-----IPPSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~~-----~~~~D~v~~~~ 81 (180)
..++.+|||+|||+|..+..+++..++.+++++|.++ ++..+++ ..++++.++|..+. ..+||.|++.-
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 321 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDA 321 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECC
Confidence 4577899999999999999999987667999999965 8877764 23478888998542 13599999532
Q ss_pred ------ccccCC-------h-------HHHHHHHHHHHHhhccCCCCcEEEEEEeeeCC
Q 030291 82 ------VFHFFD-------D-------EDCLKLLKKCREAIASNGERGKVLIIDIVIDE 120 (180)
Q Consensus 82 ------~l~~~~-------~-------~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~ 120 (180)
++.+-+ . ..+.++|.++.++|+| ||.++++.+....
T Consensus 322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~Lkp---GG~lvystcs~~~ 377 (427)
T PRK10901 322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKP---GGTLLYATCSILP 377 (427)
T ss_pred CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCCCh
Confidence 121111 1 1234789999999999 9999988764433
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.8e-09 Score=80.34 Aligned_cols=97 Identities=14% Similarity=0.260 Sum_probs=74.4
Q ss_pred CCCeEEEeCCcccHH--HH--HHHHHCC----CCeEEEeeCch-hhccCCC-----------------------------
Q 030291 15 GLRSMVDVGGGTGAF--AR--IISEAFP----GIKCTVLDLPH-AVTDMPQ----------------------------- 56 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~--~~--~l~~~~~----~~~~~~~D~~~-~~~~a~~----------------------------- 56 (180)
+.-+|+..||++|.- +. .+.+..+ ..+++++|++. +++.|++
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 346999999999963 22 2334322 46899999966 8888863
Q ss_pred --------CCCeeEEecCCcc-cC---CCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 57 --------TDNLKYIEGDMFQ-FI---PPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 57 --------~~~~~~~~~d~~~-~~---~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
...++|.+.|..+ +. +.||+|+|..++.|+.++.+.++++++.++|+| ||.+++.
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~p---gG~L~lG 261 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKP---DGLLFAG 261 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCC---CcEEEEe
Confidence 1446777778866 22 369999999999999998889999999999999 8877664
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.8e-08 Score=70.67 Aligned_cols=125 Identities=13% Similarity=0.128 Sum_probs=77.3
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCCCCCeeEEecCCcc-cCC--CccEEEeccccccCChH
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQ-FIP--PSDAFFFKTVFHFFDDE 89 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~d~~~-~~~--~~D~v~~~~~l~~~~~~ 89 (180)
.++...|.|+|||.+.++..+. ....+..+|+-.. .+ .+..+|+.. |++ ..|++++...|.- .
T Consensus 70 ~~~~~viaD~GCGdA~la~~~~---~~~~V~SfDLva~------n~--~Vtacdia~vPL~~~svDv~VfcLSLMG---T 135 (219)
T PF05148_consen 70 RPKSLVIADFGCGDAKLAKAVP---NKHKVHSFDLVAP------NP--RVTACDIANVPLEDESVDVAVFCLSLMG---T 135 (219)
T ss_dssp S-TTS-EEEES-TT-HHHHH-----S---EEEEESS-S------ST--TEEES-TTS-S--TT-EEEEEEES---S---S
T ss_pred cCCCEEEEECCCchHHHHHhcc---cCceEEEeeccCC------CC--CEEEecCccCcCCCCceeEEEEEhhhhC---C
Confidence 3456789999999999996653 2346899997321 12 245677743 433 5999887666542 2
Q ss_pred HHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEEEEeec
Q 030291 90 DCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPI 169 (180)
Q Consensus 90 ~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 169 (180)
.+..++.+..|+||| ||.+.|++... ++.+.+.+.+.+++.||+.......
T Consensus 136 n~~~fi~EA~RvLK~---~G~L~IAEV~S--------------------------Rf~~~~~F~~~~~~~GF~~~~~d~~ 186 (219)
T PF05148_consen 136 NWPDFIREANRVLKP---GGILKIAEVKS--------------------------RFENVKQFIKALKKLGFKLKSKDES 186 (219)
T ss_dssp -HHHHHHHHHHHEEE---EEEEEEEEEGG--------------------------G-S-HHHHHHHHHCTTEEEEEEE--
T ss_pred CcHHHHHHHHheecc---CcEEEEEEecc--------------------------cCcCHHHHHHHHHHCCCeEEecccC
Confidence 344899999999999 89999987421 3346788999999999999887766
Q ss_pred CCceeEEEEeC
Q 030291 170 FGIKSLIEVYP 180 (180)
Q Consensus 170 ~~~~~~~~~~~ 180 (180)
.....++++.|
T Consensus 187 n~~F~~f~F~K 197 (219)
T PF05148_consen 187 NKHFVLFEFKK 197 (219)
T ss_dssp STTEEEEEEEE
T ss_pred CCeEEEEEEEE
Confidence 77777777653
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.5e-09 Score=76.19 Aligned_cols=101 Identities=19% Similarity=0.259 Sum_probs=82.3
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHH-CCCCeEEEeeC-chhhccCCC-------CCCeeEEecCCccc--CCC
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEA-FPGIKCTVLDL-PHAVTDMPQ-------TDNLKYIEGDMFQF--IPP 73 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~-~~~~~~~~~D~-~~~~~~a~~-------~~~~~~~~~d~~~~--~~~ 73 (180)
|+.... +.++.+|+|.|.|+|.++..|+.. .|..+++.+|. .+..+.|++ ..++++..+|+.+. ...
T Consensus 86 I~~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~ 163 (256)
T COG2519 86 IVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEED 163 (256)
T ss_pred HHHHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccccc
Confidence 455666 899999999999999999999864 67789999999 447777764 45599999999763 236
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 74 SDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 74 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
+|+|+. -++++. .+++.+.++|+| ||.+.+..+.
T Consensus 164 vDav~L-----Dmp~PW--~~le~~~~~Lkp---gg~~~~y~P~ 197 (256)
T COG2519 164 VDAVFL-----DLPDPW--NVLEHVSDALKP---GGVVVVYSPT 197 (256)
T ss_pred cCEEEE-----cCCChH--HHHHHHHHHhCC---CcEEEEEcCC
Confidence 999988 567888 789999999999 8888886644
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.4e-09 Score=74.92 Aligned_cols=96 Identities=14% Similarity=0.249 Sum_probs=68.7
Q ss_pred CeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcc------cCCCccEEEecccc
Q 030291 17 RSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ------FIPPSDAFFFKTVF 83 (180)
Q Consensus 17 ~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~------~~~~~D~v~~~~~l 83 (180)
..+||||||.|.+...+++..|+..++|+|+.. .+..+.+ ..|+.++++|+.. +..+.|.|+.++-=
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence 388999999999999999999999999999944 5555542 7899999999865 22368888874321
Q ss_pred ccCCh------HHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 84 HFFDD------EDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 84 ~~~~~------~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
=+... -....+++.+.+.|+| ||.+.+..
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~---gG~l~~~T 133 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKP---GGELYFAT 133 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCC---CCEEEEEe
Confidence 11110 0234899999999999 88887754
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.2e-10 Score=78.16 Aligned_cols=96 Identities=13% Similarity=0.186 Sum_probs=72.1
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-CCCeeEEecCCcccC----CCccEEEeccccccCCh
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-TDNLKYIEGDMFQFI----PPSDAFFFKTVFHFFDD 88 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-~~~~~~~~~d~~~~~----~~~D~v~~~~~l~~~~~ 88 (180)
.+.-|||||||+|..+..+.+. +..++++|+|. |++.|.+ .-.-.+..+|+=+.. +.||.+|+.+++.++.+
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcn 127 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLCN 127 (270)
T ss_pred CCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeecc
Confidence 3788999999999999988887 56799999966 9999975 212356777774432 25999998877766532
Q ss_pred ---------HHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 89 ---------EDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 89 ---------~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
.....|+..++.+|++ |+..++.-
T Consensus 128 A~~s~~~P~~Rl~~FF~tLy~~l~r---g~raV~Qf 160 (270)
T KOG1541|consen 128 ADKSLHVPKKRLLRFFGTLYSCLKR---GARAVLQF 160 (270)
T ss_pred cCccccChHHHHHHHhhhhhhhhcc---CceeEEEe
Confidence 3445778889999999 77777643
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.5e-09 Score=75.60 Aligned_cols=95 Identities=14% Similarity=0.181 Sum_probs=71.9
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCch-hhccCCC-------CCCeeEEecCCccc---------CCCc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQF---------IPPS 74 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~---------~~~~ 74 (180)
..++++|||||||+|..+..++... +..+++++|.++ +.+.+++ ..+++++.+|..+. .++|
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 4568899999999999998888775 467999999954 7777764 46799999999652 2369
Q ss_pred cEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 75 DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 75 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
|+|+.... .+....++..+.+.|+| ||.+++-+
T Consensus 146 D~VfiDa~-----k~~y~~~~~~~~~ll~~---GG~ii~dn 178 (234)
T PLN02781 146 DFAFVDAD-----KPNYVHFHEQLLKLVKV---GGIIAFDN 178 (234)
T ss_pred CEEEECCC-----HHHHHHHHHHHHHhcCC---CeEEEEEc
Confidence 99988432 23334789999999999 66655543
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.5e-09 Score=76.52 Aligned_cols=100 Identities=14% Similarity=0.238 Sum_probs=74.5
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHH-CCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcc-cC---
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEA-FPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQ-FI--- 71 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~-~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~-~~--- 71 (180)
|+..++ +.++++|||.|.|+|.++..|+.. .|.-+++.+|..+ ..+.|++ ..++++.+.|+.. -+
T Consensus 32 I~~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~ 109 (247)
T PF08704_consen 32 ILMRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE 109 (247)
T ss_dssp HHHHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT
T ss_pred HHHHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc
Confidence 455566 899999999999999999999865 6788999999944 7777764 5689999999954 12
Q ss_pred --CCccEEEeccccccCChHHHHHHHHHHHHhh-ccCCCCcEEEEEEe
Q 030291 72 --PPSDAFFFKTVFHFFDDEDCLKLLKKCREAI-ASNGERGKVLIIDI 116 (180)
Q Consensus 72 --~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L-~p~~~~G~~~~~~~ 116 (180)
..+|.|+. -++++. .++..+.++| ++ ||.+....+
T Consensus 110 ~~~~~DavfL-----Dlp~Pw--~~i~~~~~~L~~~---gG~i~~fsP 147 (247)
T PF08704_consen 110 LESDFDAVFL-----DLPDPW--EAIPHAKRALKKP---GGRICCFSP 147 (247)
T ss_dssp -TTSEEEEEE-----ESSSGG--GGHHHHHHHE-EE---EEEEEEEES
T ss_pred ccCcccEEEE-----eCCCHH--HHHHHHHHHHhcC---CceEEEECC
Confidence 35999887 567787 6799999999 88 888777653
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.2e-08 Score=71.94 Aligned_cols=121 Identities=17% Similarity=0.199 Sum_probs=87.0
Q ss_pred CCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCCCCCeeEEecCCcc-cCC-----CccEEEeccccccCChH
Q 030291 16 LRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQ-FIP-----PSDAFFFKTVFHFFDDE 89 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~d~~~-~~~-----~~D~v~~~~~l~~~~~~ 89 (180)
.-++|||||=+..+...- .+...++.+|+.+. .+ .+.+.|+++ +.| .||+|.++.+|.++|++
T Consensus 52 ~lrlLEVGals~~N~~s~---~~~fdvt~IDLns~------~~--~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p 120 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACST---SGWFDVTRIDLNSQ------HP--GILQQDFMERPLPKNESEKFDVISLSLVLNFVPDP 120 (219)
T ss_pred cceEEeecccCCCCcccc---cCceeeEEeecCCC------CC--CceeeccccCCCCCCcccceeEEEEEEEEeeCCCH
Confidence 468999998765544332 23445899998431 11 225667766 333 59999999999999977
Q ss_pred H-HHHHHHHHHHhhccCCCCcE-----EEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeE
Q 030291 90 D-CLKLLKKCREAIASNGERGK-----VLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTH 163 (180)
Q Consensus 90 ~-~~~~l~~~~~~L~p~~~~G~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 163 (180)
. +-+++.++.+.|+| +|. ++++-+... ..+.++.+.+.|.++++..||..
T Consensus 121 ~~RG~Ml~r~~~fL~~---~g~~~~~~LFlVlP~~C---------------------v~NSRy~~~~~l~~im~~LGf~~ 176 (219)
T PF11968_consen 121 KQRGEMLRRAHKFLKP---PGLSLFPSLFLVLPLPC---------------------VTNSRYMTEERLREIMESLGFTR 176 (219)
T ss_pred HHHHHHHHHHHHHhCC---CCccCcceEEEEeCchH---------------------hhcccccCHHHHHHHHHhCCcEE
Confidence 6 45999999999999 888 777643221 12447778899999999999999
Q ss_pred EEEeecCC
Q 030291 164 YKIAPIFG 171 (180)
Q Consensus 164 ~~~~~~~~ 171 (180)
++.....-
T Consensus 177 ~~~~~~~K 184 (219)
T PF11968_consen 177 VKYKKSKK 184 (219)
T ss_pred EEEEecCe
Confidence 88765543
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.5e-09 Score=82.03 Aligned_cols=107 Identities=15% Similarity=0.118 Sum_probs=77.9
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CC--CeeEEecCCccc-----CCCccEEEe
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TD--NLKYIEGDMFQF-----IPPSDAFFF 79 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~--~~~~~~~d~~~~-----~~~~D~v~~ 79 (180)
..++.+|||+|||+|..+..+++..+..+++++|.++ ++..+++ .- ++.+..+|.... ...||.|++
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL 315 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence 4567899999999999999999887667999999965 7777654 11 233356666431 235999995
Q ss_pred ------ccccccCChH--------------HHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCC
Q 030291 80 ------KTVFHFFDDE--------------DCLKLLKKCREAIASNGERGKVLIIDIVIDEKE 122 (180)
Q Consensus 80 ------~~~l~~~~~~--------------~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~ 122 (180)
.+++++.++. .+.++|.++.++||| ||.++.+++......
T Consensus 316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkp---gG~lvystcs~~~~E 375 (426)
T TIGR00563 316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKT---GGTLVYATCSVLPEE 375 (426)
T ss_pred cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCChhh
Confidence 2456555441 135899999999999 999999887665443
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.2e-09 Score=82.19 Aligned_cols=103 Identities=17% Similarity=0.166 Sum_probs=75.5
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCch-hhccCCC------CCCeeEEecCCccc---C-CCccEEEec
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQF---I-PPSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~---~-~~~D~v~~~ 80 (180)
..++.+|||+|||+|..+..+++.. +..+++++|+++ +++.+++ ..++++.++|..+. . ..||+|++.
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D 327 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVD 327 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEc
Confidence 4567899999999999999998875 567999999965 7776653 24589999998542 2 369999974
Q ss_pred c------ccccCChH--------------HHHHHHHHHHHhhccCCCCcEEEEEEeee
Q 030291 81 T------VFHFFDDE--------------DCLKLLKKCREAIASNGERGKVLIIDIVI 118 (180)
Q Consensus 81 ~------~l~~~~~~--------------~~~~~l~~~~~~L~p~~~~G~~~~~~~~~ 118 (180)
. ++.+-++. .+..+|+.+.++|+| ||.++.+....
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~lvystcs~ 382 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKK---GGILVYSTCTI 382 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEcCCC
Confidence 2 22221111 124689999999999 89988766544
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.1e-09 Score=81.86 Aligned_cols=91 Identities=11% Similarity=0.126 Sum_probs=64.8
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcccC-------CCccEEE
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQFI-------PPSDAFF 78 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~~-------~~~D~v~ 78 (180)
..++.+|||+|||+|.++..+++.. .+++++|.++ +++.+++ ..++++.++|+.+.. ..||+|+
T Consensus 295 ~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi 372 (443)
T PRK13168 295 PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVL 372 (443)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEE
Confidence 4567899999999999999998884 5899999976 8888874 357999999985421 2599998
Q ss_pred eccccccCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 79 FKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 79 ~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
+.=--. .....++.+.+ ++| ++.++++
T Consensus 373 ~dPPr~-----g~~~~~~~l~~-~~~---~~ivyvS 399 (443)
T PRK13168 373 LDPPRA-----GAAEVMQALAK-LGP---KRIVYVS 399 (443)
T ss_pred ECcCCc-----ChHHHHHHHHh-cCC---CeEEEEE
Confidence 732211 11244555555 577 5666654
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.3e-08 Score=73.10 Aligned_cols=95 Identities=16% Similarity=0.175 Sum_probs=69.5
Q ss_pred CCCeEEEeCCcccHHHHHHHHHC---CCCeEEEeeCch-hhccCCC-CCCeeEEecCCccc--CCCccEEEeccccccC-
Q 030291 15 GLRSMVDVGGGTGAFARIISEAF---PGIKCTVLDLPH-AVTDMPQ-TDNLKYIEGDMFQF--IPPSDAFFFKTVFHFF- 86 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~---~~~~~~~~D~~~-~~~~a~~-~~~~~~~~~d~~~~--~~~~D~v~~~~~l~~~- 86 (180)
...+|||+|||+|.++..+++.. +..+++++|+++ ++..+++ ..++.+.++|+... ...||+|+++=-+.-.
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~ 128 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIK 128 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCcc
Confidence 36799999999999999988764 356899999965 8888876 45688999999652 2369999996332211
Q ss_pred ---------ChHHHHHHHHHHHHhhccCCCCcEEEE
Q 030291 87 ---------DDEDCLKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 87 ---------~~~~~~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
...-...+++++.+++++ |.+++
T Consensus 129 ~~d~~ar~~g~~~~~~li~~A~~Ll~~----G~~IL 160 (241)
T PHA03412 129 TSDFKGKYTGAEFEYKVIERASQIARQ----GTFII 160 (241)
T ss_pred ccccCCcccccHHHHHHHHHHHHHcCC----CEEEe
Confidence 112234688999997776 66655
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-08 Score=68.90 Aligned_cols=109 Identities=15% Similarity=0.129 Sum_probs=86.9
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCch-hhccCCC-CCCeeEEecCCcc--------cCC
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPH-AVTDMPQ-TDNLKYIEGDMFQ--------FIP 72 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~-~~~~a~~-~~~~~~~~~d~~~--------~~~ 72 (180)
.+.+..+ ...+.-|||+|.|+|.++++++++. +....+.+|.+. ......+ .+...++.+|..+ ..+
T Consensus 39 ~M~s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq 116 (194)
T COG3963 39 KMASVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQ 116 (194)
T ss_pred HHHhccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCC
Confidence 4455555 5667789999999999999999884 566789999954 5554444 6667788888865 234
Q ss_pred CccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 73 PSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 73 ~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
.||.|+|.--+-.++-....++|+.+...|.+ ||.++.....
T Consensus 117 ~~D~viS~lPll~~P~~~~iaile~~~~rl~~---gg~lvqftYg 158 (194)
T COG3963 117 FFDSVISGLPLLNFPMHRRIAILESLLYRLPA---GGPLVQFTYG 158 (194)
T ss_pred eeeeEEeccccccCcHHHHHHHHHHHHHhcCC---CCeEEEEEec
Confidence 59999999888889988888999999999999 8888887765
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.9e-09 Score=78.53 Aligned_cols=98 Identities=14% Similarity=0.138 Sum_probs=68.7
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------------C----CCeeEEecCCcc-------c
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------------T----DNLKYIEGDMFQ-------F 70 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------------~----~~~~~~~~d~~~-------~ 70 (180)
++.+|||+|||-|.-...+.... -..++|+|++. .++.|++ . -...+.++|... .
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 78899999999888777777664 45799999965 7777753 1 234566776643 1
Q ss_pred CC--CccEEEeccccccCC--hHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 71 IP--PSDAFFFKTVFHFFD--DEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 71 ~~--~~D~v~~~~~l~~~~--~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
.+ .||+|-|.+++||.- ....+.+|.++.+.|+| ||.++.+.+
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~---GG~FIgT~~ 187 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKP---GGYFIGTTP 187 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCC---CCEEEEEec
Confidence 12 699999999999874 34466799999999999 777766554
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.4e-08 Score=80.58 Aligned_cols=106 Identities=18% Similarity=0.217 Sum_probs=76.9
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCch-hhccCCC------CCCeeEEecCCcccC--CCccEEEec--
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQFI--PPSDAFFFK-- 80 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~~--~~~D~v~~~-- 80 (180)
..++.+|||+|||+|..+..+++.. +..+++++|+++ +++.+++ ..++++.++|..... ..||+|++.
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCC
Confidence 4567899999999999998888764 345899999966 8877764 246889999986532 359999962
Q ss_pred ----cccc-------cCChH-------HHHHHHHHHHHhhccCCCCcEEEEEEeeeCCC
Q 030291 81 ----TVFH-------FFDDE-------DCLKLLKKCREAIASNGERGKVLIIDIVIDEK 121 (180)
Q Consensus 81 ----~~l~-------~~~~~-------~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~ 121 (180)
+++. ++... .+..+|.++.++|+| ||.++.+++.....
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp---gG~lvystcs~~~~ 383 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKP---GGVLVYATCSIEPE 383 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCChh
Confidence 2221 11111 234689999999999 99999988665433
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.5e-08 Score=80.18 Aligned_cols=103 Identities=14% Similarity=0.156 Sum_probs=77.6
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCch-hhccCCC------CCCeeEEecCCcccC-------CCccEE
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQFI-------PPSDAF 77 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~~-------~~~D~v 77 (180)
..++.+|||+|||+|..+..+++.. +..+++++|.+. ++..+++ ..++++.++|..... ..||.|
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 4567899999999999999998875 346899999965 7777754 346899999985421 259999
Q ss_pred Eec------cccccCChH--------------HHHHHHHHHHHhhccCCCCcEEEEEEeee
Q 030291 78 FFK------TVFHFFDDE--------------DCLKLLKKCREAIASNGERGKVLIIDIVI 118 (180)
Q Consensus 78 ~~~------~~l~~~~~~--------------~~~~~l~~~~~~L~p~~~~G~~~~~~~~~ 118 (180)
++. +++++-++. .+.++|.++.++||| ||.++.+++..
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkp---gG~lvystcsi 387 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKP---GGTLVYATCTL 387 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCC
Confidence 962 355544431 135889999999999 99988877554
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.5e-08 Score=77.85 Aligned_cols=108 Identities=12% Similarity=0.161 Sum_probs=78.7
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCch-hhccCCC------CCCeeEEecCCccc----CCCccEEEec
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQF----IPPSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~----~~~~D~v~~~ 80 (180)
..++.+|||+|||+|..+..+++.. +..+++++|+++ +++.+++ ..++++.+.|.... ...||.|++.
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 4567899999999999999988875 456899999966 8877764 24678889988542 2359999962
Q ss_pred ------cccccCCh--------------HHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCC
Q 030291 81 ------TVFHFFDD--------------EDCLKLLKKCREAIASNGERGKVLIIDIVIDEKED 123 (180)
Q Consensus 81 ------~~l~~~~~--------------~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~ 123 (180)
+++..-++ ..+.++|.++.+.|+| ||.++.+.+.......
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvYsTCs~~~eEn 374 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEK---GGILLYSTCTVTKEEN 374 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECCCChhhC
Confidence 22222121 1245789999999999 9998888776544433
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.1e-08 Score=69.64 Aligned_cols=101 Identities=15% Similarity=0.116 Sum_probs=64.4
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCC---------CCCeeEEecCCccc-------CCCccE
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ---------TDNLKYIEGDMFQF-------IPPSDA 76 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~---------~~~~~~~~~d~~~~-------~~~~D~ 76 (180)
...+.+|||+|||+|..+..++...+..+++..|.++.++..+. ..++++...|.-++ ...||+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 45678999999999999998888866789999998654444432 35667777665321 125999
Q ss_pred EEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeee
Q 030291 77 FFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVI 118 (180)
Q Consensus 77 v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~ 118 (180)
|+.+.+++.- .....+++.+.+.|++ +|.+++.....
T Consensus 123 IlasDv~Y~~--~~~~~L~~tl~~ll~~---~~~vl~~~~~R 159 (173)
T PF10294_consen 123 ILASDVLYDE--ELFEPLVRTLKRLLKP---NGKVLLAYKRR 159 (173)
T ss_dssp EEEES--S-G--GGHHHHHHHHHHHBTT----TTEEEEEE-S
T ss_pred EEEecccchH--HHHHHHHHHHHHHhCC---CCEEEEEeCEe
Confidence 9999999864 3445889999999999 77777766544
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.2e-08 Score=73.29 Aligned_cols=105 Identities=12% Similarity=0.080 Sum_probs=75.7
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCC-CCeEEEeeCch-hhccCCC------CCCeeEEecCCcc---cCCCccEEEec-
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFP-GIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ---FIPPSDAFFFK- 80 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~---~~~~~D~v~~~- 80 (180)
..++.+|||+|||+|..+..+++... ...++++|.+. +++.+++ ..++.+.+.|... ..+.||.|++.
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 45678999999999999999888753 35899999965 7776654 3468888888743 22469999962
Q ss_pred -----cccccCChH--------------HHHHHHHHHHHhhccCCCCcEEEEEEeeeCC
Q 030291 81 -----TVFHFFDDE--------------DCLKLLKKCREAIASNGERGKVLIIDIVIDE 120 (180)
Q Consensus 81 -----~~l~~~~~~--------------~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~ 120 (180)
+++.+-++. .+.++|+.+.+.|+| ||.++.+......
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp---gG~lvYstcs~~~ 204 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKP---GGVLVYSTCSLEP 204 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCCCh
Confidence 222222211 234689999999999 8998887765443
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.9e-09 Score=77.40 Aligned_cols=78 Identities=17% Similarity=0.290 Sum_probs=61.5
Q ss_pred ccccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----CCCeeEEecCCcc-cCCCccE
Q 030291 3 TLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----TDNLKYIEGDMFQ-FIPPSDA 76 (180)
Q Consensus 3 ~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----~~~~~~~~~d~~~-~~~~~D~ 76 (180)
+.+++.+. ..++.+|||||||+|.++..+++. ..+++++|+++ +++.+++ ..++++.++|+.+ +.+.+|.
T Consensus 19 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d~ 94 (258)
T PRK14896 19 DRIVEYAE--DTDGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFNK 94 (258)
T ss_pred HHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhceE
Confidence 34555555 667889999999999999999998 45799999965 7777654 3689999999976 4567899
Q ss_pred EEeccccc
Q 030291 77 FFFKTVFH 84 (180)
Q Consensus 77 v~~~~~l~ 84 (180)
|+++-..+
T Consensus 95 Vv~NlPy~ 102 (258)
T PRK14896 95 VVSNLPYQ 102 (258)
T ss_pred EEEcCCcc
Confidence 99876643
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1e-07 Score=68.68 Aligned_cols=123 Identities=16% Similarity=0.154 Sum_probs=87.5
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCCCCCeeEEecCCcc-cC--CCccEEEeccccccCChH
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQ-FI--PPSDAFFFKTVFHFFDDE 89 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~d~~~-~~--~~~D~v~~~~~l~~~~~~ 89 (180)
.+....|.|+|||.+.++. .. ...+..+|+-. .+-.+..+|+.+ ++ .+.|++++...|. ..
T Consensus 178 r~~~~vIaD~GCGEakiA~---~~--~~kV~SfDL~a--------~~~~V~~cDm~~vPl~d~svDvaV~CLSLM---gt 241 (325)
T KOG3045|consen 178 RPKNIVIADFGCGEAKIAS---SE--RHKVHSFDLVA--------VNERVIACDMRNVPLEDESVDVAVFCLSLM---GT 241 (325)
T ss_pred CcCceEEEecccchhhhhh---cc--ccceeeeeeec--------CCCceeeccccCCcCccCcccEEEeeHhhh---cc
Confidence 3566788999999998876 22 23488888632 123446677755 33 3699877755443 22
Q ss_pred HHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEEEEeec
Q 030291 90 DCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPI 169 (180)
Q Consensus 90 ~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 169 (180)
.+..++.++.++|++ ||.+++.+.- .++-+...+...+...||.+......
T Consensus 242 n~~df~kEa~RiLk~---gG~l~IAEv~--------------------------SRf~dv~~f~r~l~~lGF~~~~~d~~ 292 (325)
T KOG3045|consen 242 NLADFIKEANRILKP---GGLLYIAEVK--------------------------SRFSDVKGFVRALTKLGFDVKHKDVS 292 (325)
T ss_pred cHHHHHHHHHHHhcc---CceEEEEehh--------------------------hhcccHHHHHHHHHHcCCeeeehhhh
Confidence 334899999999999 9999997732 13446677999999999999888877
Q ss_pred CCceeEEEEeC
Q 030291 170 FGIKSLIEVYP 180 (180)
Q Consensus 170 ~~~~~~~~~~~ 180 (180)
.....++++.+
T Consensus 293 n~~F~lfefkK 303 (325)
T KOG3045|consen 293 NKYFTLFEFKK 303 (325)
T ss_pred cceEEEEEEec
Confidence 77777777754
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.2e-08 Score=82.54 Aligned_cols=96 Identities=14% Similarity=0.181 Sum_probs=70.4
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------C-CCeeEEecCCcccC----CCccEEEecc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------T-DNLKYIEGDMFQFI----PPSDAFFFKT 81 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~-~~~~~~~~d~~~~~----~~~D~v~~~~ 81 (180)
.+.+|||+|||+|.++..++... ..+++++|.++ +++.+++ . .+++++++|+.+.. ..||+|++.=
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~G-a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGG-AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 47899999999999999988863 33699999976 8888875 1 47899999986532 3699999842
Q ss_pred c-cc------cCC--hHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 82 V-FH------FFD--DEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 82 ~-l~------~~~--~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
- +. ... ......++..+.+.|+| ||.+++.
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~---gG~l~~~ 655 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRP---GGTLYFS 655 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCC---CCEEEEE
Confidence 1 00 000 12234678889999999 8877664
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.2e-08 Score=72.13 Aligned_cols=96 Identities=15% Similarity=0.187 Sum_probs=70.7
Q ss_pred CeEEEeCCcccHHHHHHHHHCCCCeEEEeeCc-hhhccCCC-----CC-CeeEEecCCccc------CCCccEEEecccc
Q 030291 17 RSMVDVGGGTGAFARIISEAFPGIKCTVLDLP-HAVTDMPQ-----TD-NLKYIEGDMFQF------IPPSDAFFFKTVF 83 (180)
Q Consensus 17 ~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~-~~~~~a~~-----~~-~~~~~~~d~~~~------~~~~D~v~~~~~l 83 (180)
..+||||||.|.+...+++..|...++|+|+. ..+..+.+ .- |+.+++.|+... .++.|-|+.++.=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 47999999999999999999999999999993 34444432 34 899999998551 2268888874331
Q ss_pred ccCCh------HHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 84 HFFDD------EDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 84 ~~~~~------~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
=+... -....+++.+.+.|+| ||.+.+.+
T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~---gG~l~~aT 164 (227)
T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKP---GGVLHFAT 164 (227)
T ss_pred CCCCccccccccCCHHHHHHHHHHccC---CCEEEEEe
Confidence 11100 1234899999999999 88888864
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.3e-08 Score=72.35 Aligned_cols=95 Identities=23% Similarity=0.340 Sum_probs=71.9
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCC-CCeEEEeeCch-hhccCCC-------CCCeeEEecCCccc---------CCCc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFP-GIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQF---------IPPS 74 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~---------~~~~ 74 (180)
..++++|||||+++|..+..+++..| +.+++.+|..+ ..+.|++ ..+++++.+|..+. .+.|
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF 122 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence 45788999999999999999998865 68999999944 7777754 46899999999652 1369
Q ss_pred cEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 75 DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 75 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
|+|+.-.. ......++..+.+.|+| |+++++|.
T Consensus 123 D~VFiDa~-----K~~y~~y~~~~~~ll~~----ggvii~DN 155 (205)
T PF01596_consen 123 DFVFIDAD-----KRNYLEYFEKALPLLRP----GGVIIADN 155 (205)
T ss_dssp EEEEEEST-----GGGHHHHHHHHHHHEEE----EEEEEEET
T ss_pred eEEEEccc-----ccchhhHHHHHhhhccC----CeEEEEcc
Confidence 99998543 22334778899999999 66666654
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.8e-08 Score=70.18 Aligned_cols=97 Identities=18% Similarity=0.303 Sum_probs=74.6
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCC-CCeEEEeeCc-hhhccCCC-------CCCeeEEe-cCCcc---c--CCCccEE
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFP-GIKCTVLDLP-HAVTDMPQ-------TDNLKYIE-GDMFQ---F--IPPSDAF 77 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~~~~D~~-~~~~~a~~-------~~~~~~~~-~d~~~---~--~~~~D~v 77 (180)
..++++|||||.+.|.-+..++...| +.+++.+|.. ++...|++ ..++..+. +|..+ . .++||+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 46789999999999999999999987 7799999994 58888875 45688888 57755 2 3579999
Q ss_pred EeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeee
Q 030291 78 FFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVI 118 (180)
Q Consensus 78 ~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~ 118 (180)
|.-.. ......++..+.+.|+| |++++.|...
T Consensus 137 FIDad-----K~~yp~~le~~~~lLr~----GGliv~DNvl 168 (219)
T COG4122 137 FIDAD-----KADYPEYLERALPLLRP----GGLIVADNVL 168 (219)
T ss_pred EEeCC-----hhhCHHHHHHHHHHhCC----CcEEEEeecc
Confidence 98433 22334889999999999 5555555443
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.1e-09 Score=77.45 Aligned_cols=76 Identities=21% Similarity=0.283 Sum_probs=58.0
Q ss_pred ccccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC---CCCeeEEecCCcc-cCCC--cc
Q 030291 3 TLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ---TDNLKYIEGDMFQ-FIPP--SD 75 (180)
Q Consensus 3 ~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~---~~~~~~~~~d~~~-~~~~--~D 75 (180)
+.+++.+. +.++.+|||||||+|.++..+++..+ +++++|+++ +++.+++ ..+++++++|+.+ +.+. +|
T Consensus 32 ~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~ 107 (272)
T PRK00274 32 DKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPL 107 (272)
T ss_pred HHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcc
Confidence 34455555 66788999999999999999999964 799999965 8888765 3689999999965 2333 47
Q ss_pred EEEeccc
Q 030291 76 AFFFKTV 82 (180)
Q Consensus 76 ~v~~~~~ 82 (180)
.|+++--
T Consensus 108 ~vv~NlP 114 (272)
T PRK00274 108 KVVANLP 114 (272)
T ss_pred eEEEeCC
Confidence 7777643
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.4e-08 Score=72.15 Aligned_cols=141 Identities=20% Similarity=0.358 Sum_probs=80.4
Q ss_pred CCCeEEEeCCccc--HHHHHHHH-HCCCCeEEEeeCch-hhccCCC----CCC--eeEEecCCcccC-----C----Ccc
Q 030291 15 GLRSMVDVGGGTG--AFARIISE-AFPGIKCTVLDLPH-AVTDMPQ----TDN--LKYIEGDMFQFI-----P----PSD 75 (180)
Q Consensus 15 ~~~~iLdiG~G~G--~~~~~l~~-~~~~~~~~~~D~~~-~~~~a~~----~~~--~~~~~~d~~~~~-----~----~~D 75 (180)
+-...||||||.- .+++.+++ ..|.+++..+|... .+..++. ..+ ..++++|+.++. + -.|
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 5678999999974 25555554 47999999999955 7777764 344 889999997631 1 133
Q ss_pred -----EEEeccccccCCh-HHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCH
Q 030291 76 -----AFFFKTVFHFFDD-EDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTE 149 (180)
Q Consensus 76 -----~v~~~~~l~~~~~-~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
.+++..++||++| .+-..++++++++|.| |.+++++.......... . ......+.........++.
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lap---GS~L~ish~t~d~~p~~--~---~~~~~~~~~~~~~~~~Rs~ 219 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAP---GSYLAISHATDDGAPER--A---EALEAVYAQAGSPGRPRSR 219 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-T---T-EEEEEEEB-TTSHHH--H---HHHHHHHHHCCS----B-H
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCC---CceEEEEecCCCCCHHH--H---HHHHHHHHcCCCCceecCH
Confidence 6888999999987 4566899999999999 88888887655332211 1 1111222222344577899
Q ss_pred HHHHHHHHHcCCeEEE
Q 030291 150 QEWGSLFVNAGFTHYK 165 (180)
Q Consensus 150 ~~~~~~l~~aGf~~~~ 165 (180)
+++..+|. ||++++
T Consensus 220 ~ei~~~f~--g~elve 233 (267)
T PF04672_consen 220 EEIAAFFD--GLELVE 233 (267)
T ss_dssp HHHHHCCT--TSEE-T
T ss_pred HHHHHHcC--CCccCC
Confidence 99999986 887654
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.1e-08 Score=72.36 Aligned_cols=76 Identities=17% Similarity=0.261 Sum_probs=57.4
Q ss_pred ccccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----CCCeeEEecCCcc-cCCCcc-
Q 030291 3 TLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----TDNLKYIEGDMFQ-FIPPSD- 75 (180)
Q Consensus 3 ~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----~~~~~~~~~d~~~-~~~~~D- 75 (180)
+.+++.+. ..++.+|||||||+|.++..+++..+ .++++|.++ ++..+++ ..++++.++|+.+ +.+.+|
T Consensus 19 ~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d~ 94 (253)
T TIGR00755 19 QKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFPK 94 (253)
T ss_pred HHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcCC
Confidence 34555555 66788999999999999999999975 499999965 7766654 3689999999966 333566
Q ss_pred --EEEeccc
Q 030291 76 --AFFFKTV 82 (180)
Q Consensus 76 --~v~~~~~ 82 (180)
+|+++-.
T Consensus 95 ~~~vvsNlP 103 (253)
T TIGR00755 95 QLKVVSNLP 103 (253)
T ss_pred cceEEEcCC
Confidence 6666544
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.73 E-value=9e-08 Score=70.85 Aligned_cols=96 Identities=10% Similarity=0.089 Sum_probs=72.5
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCC-CCeEEEeeCch-hhccCCC-------CCCeeEEecCCccc---------CCCc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFP-GIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQF---------IPPS 74 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~---------~~~~ 74 (180)
+.++++|||||+++|..+..++...+ +.+++.+|.++ ..+.|++ ..+++++.+|..+. .+.|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 45689999999999999999988754 56799999954 7777754 46899999998652 1369
Q ss_pred cEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 75 DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 75 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
|+|+.-.- ......+++.+.+.|+| ||.+++-+.
T Consensus 196 D~VFIDa~-----K~~Y~~y~e~~l~lL~~---GGvIV~DNv 229 (278)
T PLN02476 196 DFAFVDAD-----KRMYQDYFELLLQLVRV---GGVIVMDNV 229 (278)
T ss_pred CEEEECCC-----HHHHHHHHHHHHHhcCC---CcEEEEecC
Confidence 99998443 33345789999999999 555555333
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.2e-08 Score=76.42 Aligned_cols=82 Identities=17% Similarity=0.313 Sum_probs=61.7
Q ss_pred ccccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcc-cCCC
Q 030291 3 TLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQ-FIPP 73 (180)
Q Consensus 3 ~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~-~~~~ 73 (180)
+.+++... ..++.+|||||||+|.++..+++.. .+++++|+++ +++.+++ ..+++++++|+.+ ..+.
T Consensus 26 ~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~ 101 (294)
T PTZ00338 26 DKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPY 101 (294)
T ss_pred HHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccc
Confidence 34455555 6778899999999999999999884 5699999965 7777653 3679999999976 4557
Q ss_pred ccEEEeccccccCChH
Q 030291 74 SDAFFFKTVFHFFDDE 89 (180)
Q Consensus 74 ~D~v~~~~~l~~~~~~ 89 (180)
+|.|+++-- +++..+
T Consensus 102 ~d~VvaNlP-Y~Istp 116 (294)
T PTZ00338 102 FDVCVANVP-YQISSP 116 (294)
T ss_pred cCEEEecCC-cccCcH
Confidence 898887544 344444
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.5e-08 Score=72.32 Aligned_cols=76 Identities=22% Similarity=0.453 Sum_probs=62.9
Q ss_pred cccccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeC-chhhccCCC-------CCCeeEEecCCcc-cCC
Q 030291 2 ATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDL-PHAVTDMPQ-------TDNLKYIEGDMFQ-FIP 72 (180)
Q Consensus 2 ~~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~-------~~~~~~~~~d~~~-~~~ 72 (180)
+..|++..+ +++++.|||||.|||.++..+++. +.+++++|+ +.|+....+ ....++..+|++. ++|
T Consensus 47 ~~~I~~ka~--~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P 122 (315)
T KOG0820|consen 47 IDQIVEKAD--LKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP 122 (315)
T ss_pred HHHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc
Confidence 345677777 899999999999999999999999 666999999 447666543 4788999999987 678
Q ss_pred CccEEEecc
Q 030291 73 PSDAFFFKT 81 (180)
Q Consensus 73 ~~D~v~~~~ 81 (180)
.||.++++-
T Consensus 123 ~fd~cVsNl 131 (315)
T KOG0820|consen 123 RFDGCVSNL 131 (315)
T ss_pred ccceeeccC
Confidence 999999853
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-07 Score=72.25 Aligned_cols=96 Identities=15% Similarity=0.105 Sum_probs=71.1
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----------CCCeeEEecCCccc----CCCccEEE
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----------TDNLKYIEGDMFQF----IPPSDAFF 78 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----------~~~~~~~~~d~~~~----~~~~D~v~ 78 (180)
+++++||.||+|.|..++.+++..+..+++.+|+.+ +++.+++ .++++++.+|.... ...||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 467899999999999999988876677899999954 7777764 36889999988663 23699999
Q ss_pred eccccccC---C--hHHHHHHHH-HHHHhhccCCCCcEEEE
Q 030291 79 FKTVFHFF---D--DEDCLKLLK-KCREAIASNGERGKVLI 113 (180)
Q Consensus 79 ~~~~l~~~---~--~~~~~~~l~-~~~~~L~p~~~~G~~~~ 113 (180)
+-.. ... + .....++++ .+++.|+| ||.+++
T Consensus 182 ~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p---~Gvlv~ 218 (336)
T PLN02823 182 GDLA-DPVEGGPCYQLYTKSFYERIVKPKLNP---GGIFVT 218 (336)
T ss_pred ecCC-CccccCcchhhccHHHHHHHHHHhcCC---CcEEEE
Confidence 8531 111 1 111237888 89999999 776554
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=8.6e-07 Score=67.10 Aligned_cols=144 Identities=17% Similarity=0.153 Sum_probs=85.3
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC--------CCCeeEEe-cCC---ccc----CCCccEE
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ--------TDNLKYIE-GDM---FQF----IPPSDAF 77 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~--------~~~~~~~~-~d~---~~~----~~~~D~v 77 (180)
...++||||||+|.+...++...++.+++++|+++ +++.|++ ..++++.. .|. ... ...||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 56899999999999988888887789999999965 8888874 23566654 222 221 2359999
Q ss_pred EeccccccCChHHHH---HHHHHH----------------HHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceee
Q 030291 78 FFKTVFHFFDDEDCL---KLLKKC----------------REAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFM 138 (180)
Q Consensus 78 ~~~~~l~~~~~~~~~---~~l~~~----------------~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (180)
+|+=-++.-...... .-.+.+ .+++.+ ||.+-++.....+. ........++.
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~---GGe~~fi~~mi~eS------~~~~~~~gwft 264 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCE---GGEVAFIKRMIEES------KAFAKQVLWFT 264 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeC---CcEeeeehHhhHHH------HHHHhhCcEEE
Confidence 998665433222100 111222 223335 56655544332221 01111111111
Q ss_pred EeecCCcccCHHHHHHHHHHcCCeEEEEeec
Q 030291 139 NFNVGGKERTEQEWGSLFVNAGFTHYKIAPI 169 (180)
Q Consensus 139 ~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 169 (180)
..-++.-+.+.+.+.|++.|...+.+...
T Consensus 265 --smv~kk~~l~~l~~~L~~~~~~~~~~~e~ 293 (321)
T PRK11727 265 --SLVSKKENLPPLYRALKKVGAVEVKTIEM 293 (321)
T ss_pred --EEeeccCCHHHHHHHHHHcCCceEEEEEE
Confidence 11124458899999999999977666554
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.64 E-value=7.8e-07 Score=65.51 Aligned_cols=135 Identities=15% Similarity=0.105 Sum_probs=91.7
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hh-------ccCCC-----------------------------
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AV-------TDMPQ----------------------------- 56 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~-------~~a~~----------------------------- 56 (180)
....+||--|||.|+++..++.. +..+.+.|.|- |+ ....+
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 45679999999999999999998 66788888654 42 22110
Q ss_pred ----------CCCeeEEecCCcc--cC----CCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCC
Q 030291 57 ----------TDNLKYIEGDMFQ--FI----PPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDE 120 (180)
Q Consensus 57 ----------~~~~~~~~~d~~~--~~----~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~ 120 (180)
..+++...+|+.+ .. ..||+|+..+.+...++-- ++++.+.++||| ||..+=..+..-.
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~--~Yi~tI~~lLkp---gG~WIN~GPLlyh 207 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENII--EYIETIEHLLKP---GGYWINFGPLLYH 207 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHH--HHHHHHHHHhcc---CCEEEecCCcccc
Confidence 2467788888866 12 2599999998887766655 899999999999 6633333322111
Q ss_pred CCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEEEEee
Q 030291 121 KEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAP 168 (180)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 168 (180)
. ..........-.++.+|+..++++.||+++....
T Consensus 208 ~-------------~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 208 F-------------EPMSIPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred C-------------CCCCCCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 0 0000000111346889999999999999876654
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.2e-06 Score=60.08 Aligned_cols=133 Identities=13% Similarity=0.197 Sum_probs=85.4
Q ss_pred CCCeEEEeCCcccHHHHHHHHH-CCCCeEEEeeCc-hhhccCCC-----CCCeeEEecCCccc--CCCccEEEeccc--c
Q 030291 15 GLRSMVDVGGGTGAFARIISEA-FPGIKCTVLDLP-HAVTDMPQ-----TDNLKYIEGDMFQF--IPPSDAFFFKTV--F 83 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~-~~~~~~~~~D~~-~~~~~a~~-----~~~~~~~~~d~~~~--~~~~D~v~~~~~--l 83 (180)
.+.-++|||||+|..+..|.+. .|++.+...|++ ++.+..++ ..+++.++.|+.+. ..+.|+++.+=- .
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPPYVp 122 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPPYVP 122 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCCcCc
Confidence 3677999999999999999887 478889999994 45554332 45678888888663 346888877522 1
Q ss_pred cc---CC--------------hHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcc
Q 030291 84 HF---FD--------------DEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKE 146 (180)
Q Consensus 84 ~~---~~--------------~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (180)
.. +. -....+++.++-..|.| .|.+++......
T Consensus 123 t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp---~Gv~Ylv~~~~N--------------------------- 172 (209)
T KOG3191|consen 123 TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSP---RGVFYLVALRAN--------------------------- 172 (209)
T ss_pred CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCc---CceEEeeehhhc---------------------------
Confidence 11 10 01123556666677777 777777543211
Q ss_pred cCHHHHHHHHHHcCCeEEEEeec---CCceeEEEE
Q 030291 147 RTEQEWGSLFVNAGFTHYKIAPI---FGIKSLIEV 178 (180)
Q Consensus 147 ~~~~~~~~~l~~aGf~~~~~~~~---~~~~~~~~~ 178 (180)
.++++-..++..||........ +...+.+.+
T Consensus 173 -~p~ei~k~l~~~g~~~~~~~~Rk~~~E~l~ilkf 206 (209)
T KOG3191|consen 173 -KPKEILKILEKKGYGVRIAMQRKAGGETLSILKF 206 (209)
T ss_pred -CHHHHHHHHhhcccceeEEEEEecCCceEEEEEE
Confidence 3466777888888876544432 334455544
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.63 E-value=7.3e-08 Score=71.51 Aligned_cols=98 Identities=16% Similarity=0.187 Sum_probs=73.4
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC--------CC----CeeEEecCCcc---------c
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ--------TD----NLKYIEGDMFQ---------F 70 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~--------~~----~~~~~~~d~~~---------~ 70 (180)
.++.+.++++|||-|.-++.+.+.. -..++++|+.+ .+++|++ .. ...|+++|-.. +
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~ 193 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFK 193 (389)
T ss_pred hccccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCC
Confidence 4778889999999998888887764 33689999987 7888874 11 24666766532 2
Q ss_pred CCCccEEEeccccccCC--hHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 71 IPPSDAFFFKTVFHFFD--DEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 71 ~~~~D~v~~~~~l~~~~--~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
.|.||+|-|.+++||.- ....+-+|.++...|+| ||.++-+
T Consensus 194 dp~fDivScQF~~HYaFetee~ar~~l~Nva~~Lkp---GG~FIgT 236 (389)
T KOG1975|consen 194 DPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKP---GGVFIGT 236 (389)
T ss_pred CCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCC---CcEEEEe
Confidence 34599999999999764 34456789999999999 5655543
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.8e-09 Score=73.62 Aligned_cols=94 Identities=18% Similarity=0.271 Sum_probs=69.9
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEec-CCcccCCCccEEEeccccccCChHHH
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEG-DMFQFIPPSDAFFFKTVFHFFDDEDC 91 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~-d~~~~~~~~D~v~~~~~l~~~~~~~~ 91 (180)
..+.++||+|+|.|..+..++..+.. +++.++|. |..+.++. +..++.. +-.+..-.+|+|.|..++....++.
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~fee--vyATElS~tMr~rL~kk-~ynVl~~~ew~~t~~k~dli~clNlLDRc~~p~- 186 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTFEE--VYATELSWTMRDRLKKK-NYNVLTEIEWLQTDVKLDLILCLNLLDRCFDPF- 186 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchHHH--HHHHHhhHHHHHHHhhc-CCceeeehhhhhcCceeehHHHHHHHHhhcChH-
Confidence 34689999999999999999888655 88889977 88877652 2222211 1111222599999999999888888
Q ss_pred HHHHHHHHHhhccCCCCcEEEEE
Q 030291 92 LKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 92 ~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
++|+.++.+|.|. +|.++++
T Consensus 187 -kLL~Di~~vl~ps--ngrviva 206 (288)
T KOG3987|consen 187 -KLLEDIHLVLAPS--NGRVIVA 206 (288)
T ss_pred -HHHHHHHHHhccC--CCcEEEE
Confidence 7899999999994 5776664
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.6e-07 Score=61.82 Aligned_cols=89 Identities=17% Similarity=0.223 Sum_probs=63.3
Q ss_pred ccccccccccCCCeEEEeCCcccH-HHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcccCC----CccEEE
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGA-FARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQFIP----PSDAFF 78 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~-~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~~~----~~D~v~ 78 (180)
|.+.+. -..+.+++|||||+|. .+..|.+. +..++++|.++ .++.+++ ..++++.+|.+++.. .+|+|.
T Consensus 8 l~~~~~--~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~-~~~~~v~dDlf~p~~~~y~~a~liy 82 (134)
T PRK04148 8 IAENYE--KGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKK-LGLNAFVDDLFNPNLEIYKNAKLIY 82 (134)
T ss_pred HHHhcc--cccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHH-hCCeEEECcCCCCCHHHHhcCCEEE
Confidence 444444 3445789999999996 77777766 67899999965 7777754 357889999987543 599999
Q ss_pred eccccccCChHHHHHHHHHHHHhhc
Q 030291 79 FKTVFHFFDDEDCLKLLKKCREAIA 103 (180)
Q Consensus 79 ~~~~l~~~~~~~~~~~l~~~~~~L~ 103 (180)
+... .++....+.++++.++
T Consensus 83 sirp-----p~el~~~~~~la~~~~ 102 (134)
T PRK04148 83 SIRP-----PRDLQPFILELAKKIN 102 (134)
T ss_pred EeCC-----CHHHHHHHHHHHHHcC
Confidence 8543 3444455666666664
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.8e-07 Score=71.14 Aligned_cols=98 Identities=13% Similarity=0.162 Sum_probs=69.3
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------C-CCeeEEecCCccc-------CCCccEE
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------T-DNLKYIEGDMFQF-------IPPSDAF 77 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~-~~~~~~~~d~~~~-------~~~~D~v 77 (180)
..+.+|||+|||+|.++...+.. ...+++++|.++ +++.+++ . .+++++++|+.+. ...||+|
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 35789999999999998765543 244899999976 8887764 1 3789999999662 1269999
Q ss_pred EeccccccCCh--------HHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 78 FFKTVFHFFDD--------EDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 78 ~~~~~l~~~~~--------~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
++.=-. .... .....++..+.+.|+| ||.++.+.+
T Consensus 298 ilDPP~-f~~~k~~l~~~~~~y~~l~~~a~~lLk~---gG~lv~~sc 340 (396)
T PRK15128 298 VMDPPK-FVENKSQLMGACRGYKDINMLAIQLLNP---GGILLTFSC 340 (396)
T ss_pred EECCCC-CCCChHHHHHHHHHHHHHHHHHHHHcCC---CeEEEEEeC
Confidence 985321 1111 1233556678899999 888887654
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.1e-07 Score=65.20 Aligned_cols=132 Identities=12% Similarity=0.059 Sum_probs=77.4
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhcc-CCCCCCee-EEecCCcc--------cCCCccEEEecccc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTD-MPQTDNLK-YIEGDMFQ--------FIPPSDAFFFKTVF 83 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~-a~~~~~~~-~~~~d~~~--------~~~~~D~v~~~~~l 83 (180)
.+.++||+|||+|.++..+++.. -.+++++|.+. ++.. .++..++. +...|+.. ....+|+++.+..
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~g-a~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~- 152 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKG-AKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLI- 152 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehH-
Confidence 56789999999999999999873 45799999965 6654 44444433 33333321 1224777776544
Q ss_pred ccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEee-cCCcccCHHHHHHHHHHcCCe
Q 030291 84 HFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFN-VGGKERTEQEWGSLFVNAGFT 162 (180)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~aGf~ 162 (180)
.++..+.+.|+| +-.+++..+-..-.. ......+... ...+..-.+.+...+.+.||+
T Consensus 153 ---------~~l~~i~~~l~~---~~~~~L~KPqFE~~~---------~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~ 211 (228)
T TIGR00478 153 ---------SILPELDLLLNP---NDLTLLFKPQFEAGR---------EKKNKKGVVRDKEAIALALHKVIDKGESPDFQ 211 (228)
T ss_pred ---------hHHHHHHHHhCc---CeEEEEcChHhhhcH---------hhcCcCCeecCHHHHHHHHHHHHHHHHcCCCe
Confidence 348889999998 444445422111100 0111111110 011223456777778889999
Q ss_pred EEEEeec
Q 030291 163 HYKIAPI 169 (180)
Q Consensus 163 ~~~~~~~ 169 (180)
+......
T Consensus 212 ~~~~~~s 218 (228)
T TIGR00478 212 EKKIIFS 218 (228)
T ss_pred EeeEEEC
Confidence 8776644
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=3e-07 Score=66.88 Aligned_cols=66 Identities=18% Similarity=0.268 Sum_probs=51.0
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCc----ccC----CCccEEE
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMF----QFI----PPSDAFF 78 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~----~~~----~~~D~v~ 78 (180)
.+..|||+|||+|..+..++...|.++++++|.|+ ++.-+.. .+++...+.++. .+. +.+|+++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllv 227 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLV 227 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEe
Confidence 34579999999999999999999999999999977 5554432 677877755443 222 3699988
Q ss_pred ec
Q 030291 79 FK 80 (180)
Q Consensus 79 ~~ 80 (180)
+|
T Consensus 228 sN 229 (328)
T KOG2904|consen 228 SN 229 (328)
T ss_pred cC
Confidence 86
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.3e-07 Score=65.25 Aligned_cols=65 Identities=18% Similarity=0.305 Sum_probs=53.4
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeC-chhhccCCC-----CCCeeEEecCCcccCCCccEEEec
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDL-PHAVTDMPQ-----TDNLKYIEGDMFQFIPPSDAFFFK 80 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~-----~~~~~~~~~d~~~~~~~~D~v~~~ 80 (180)
.+++|+|+|||||.++...+-.. -.+++++|+ +++++-+++ ..++.+..+|+.+....+|.++.|
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lG-a~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimN 115 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLG-ASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMN 115 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcC-CcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEEC
Confidence 46789999999999998877775 348999999 568887775 468999999997666789988885
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.59 E-value=1e-07 Score=72.44 Aligned_cols=64 Identities=25% Similarity=0.312 Sum_probs=52.0
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCccc---C-CCccEEEec
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQF---I-PPSDAFFFK 80 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~---~-~~~D~v~~~ 80 (180)
++.+|||+|||+|.++..+++. +.+++++|.++ +++.+++ ..++++.++|+.+. . ..||+|++.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 4689999999999999999885 56899999965 8888764 34799999999542 1 259999985
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.1e-07 Score=69.58 Aligned_cols=94 Identities=18% Similarity=0.269 Sum_probs=70.4
Q ss_pred CCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCC-------CCCeeEEecCCcc-cCC-CccEEEeccccccC
Q 030291 16 LRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ-------TDNLKYIEGDMFQ-FIP-PSDAFFFKTVFHFF 86 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~-------~~~~~~~~~d~~~-~~~-~~D~v~~~~~l~~~ 86 (180)
++.|||+|||+|.++-..++.. -.++.+++-|+|.+.|++ ..+|+++.+-+.+ .+| ..|++|+--+=.-+
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~mL 256 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAG-AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYML 256 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhC-cceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchhhh
Confidence 5679999999999998888875 447999999999999885 6889999998865 556 59999984433333
Q ss_pred ChHHHHHHHHHHHHhhccCCCCcEEEE
Q 030291 87 DDEDCLKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 87 ~~~~~~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
-++...+..--.++.|+| .|..+=
T Consensus 257 ~NERMLEsYl~Ark~l~P---~GkMfP 280 (517)
T KOG1500|consen 257 VNERMLESYLHARKWLKP---NGKMFP 280 (517)
T ss_pred hhHHHHHHHHHHHhhcCC---CCcccC
Confidence 344333333345699999 888774
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.7e-07 Score=70.89 Aligned_cols=99 Identities=14% Similarity=0.206 Sum_probs=74.7
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHC----CCCeEEEeeCch-hhccCCC------CCCeeE--EecCCccc---C-----
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAF----PGIKCTVLDLPH-AVTDMPQ------TDNLKY--IEGDMFQF---I----- 71 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~----~~~~~~~~D~~~-~~~~a~~------~~~~~~--~~~d~~~~---~----- 71 (180)
++++..++|+|||+|.-+..|++.. ...+|+.+|+|. +++.+.+ .+.+++ +++|+.+. +
T Consensus 74 i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~ 153 (319)
T TIGR03439 74 IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPEN 153 (319)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccc
Confidence 3567789999999999888877764 346899999976 7766643 244544 78888542 1
Q ss_pred -CCccEEEec-cccccCChHHHHHHHHHHHH-hhccCCCCcEEEEE
Q 030291 72 -PPSDAFFFK-TVFHFFDDEDCLKLLKKCRE-AIASNGERGKVLII 114 (180)
Q Consensus 72 -~~~D~v~~~-~~l~~~~~~~~~~~l~~~~~-~L~p~~~~G~~~~~ 114 (180)
+...+++.. +++.++++++...+|+++++ .|+| ||.+++.
T Consensus 154 ~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~---~d~lLiG 196 (319)
T TIGR03439 154 RSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSP---SDSFLIG 196 (319)
T ss_pred cCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCC---CCEEEEe
Confidence 125666664 58999999999999999999 9999 7887773
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.7e-07 Score=70.42 Aligned_cols=95 Identities=16% Similarity=0.122 Sum_probs=68.9
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCC-------CCCeeEEecCCcc---cCCCccEEEecccc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ-------TDNLKYIEGDMFQ---FIPPSDAFFFKTVF 83 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~-------~~~~~~~~~d~~~---~~~~~D~v~~~~~l 83 (180)
=..++|||+|||+|.++..-++.+ -.+++++|-|++.+.+.+ ...+++..+.+.+ +.+..|+|++-++=
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence 356789999999999999988887 568999999887777764 4568888888865 33479999997664
Q ss_pred ccCCh-HHHHHHHHHHHHhhccCCCCcEEE
Q 030291 84 HFFDD-EDCLKLLKKCREAIASNGERGKVL 112 (180)
Q Consensus 84 ~~~~~-~~~~~~l~~~~~~L~p~~~~G~~~ 112 (180)
+++-- .-...+|-.-=++|+| ||.++
T Consensus 138 y~Ll~EsMldsVl~ARdkwL~~---~G~i~ 164 (346)
T KOG1499|consen 138 YFLLYESMLDSVLYARDKWLKE---GGLIY 164 (346)
T ss_pred HHHHHhhhhhhhhhhhhhccCC---CceEc
Confidence 44332 2222334444489999 66554
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.1e-07 Score=67.63 Aligned_cols=98 Identities=15% Similarity=0.239 Sum_probs=74.8
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCc-hhhccCCC----------CCCeeEEecCCccc---CC-CccEEE
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLP-HAVTDMPQ----------TDNLKYIEGDMFQF---IP-PSDAFF 78 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~-~~~~~a~~----------~~~~~~~~~d~~~~---~~-~~D~v~ 78 (180)
+++++||-||.|.|..++.+++..+..+++.+|+. .+++.+++ .+|++++..|..+. .+ .||+|+
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence 44579999999999999999999988999999995 48888875 37888999888662 23 599999
Q ss_pred eccccc--cCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 79 FKTVFH--FFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 79 ~~~~l~--~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
+-..=. .-+..-...+++.++++|++ +|.++..
T Consensus 155 ~D~tdp~gp~~~Lft~eFy~~~~~~L~~---~Gi~v~q 189 (282)
T COG0421 155 VDSTDPVGPAEALFTEEFYEGCRRALKE---DGIFVAQ 189 (282)
T ss_pred EcCCCCCCcccccCCHHHHHHHHHhcCC---CcEEEEe
Confidence 854422 11111223899999999999 6666654
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.1e-07 Score=66.54 Aligned_cols=97 Identities=21% Similarity=0.267 Sum_probs=70.9
Q ss_pred ccccccccCCCeEEEeCCcccHHHHHHHHHC--CCCeEEEeeC-chhhccCCC----------------CCCeeEEecCC
Q 030291 7 KDCRPIFQGLRSMVDVGGGTGAFARIISEAF--PGIKCTVLDL-PHAVTDMPQ----------------TDNLKYIEGDM 67 (180)
Q Consensus 7 ~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~--~~~~~~~~D~-~~~~~~a~~----------------~~~~~~~~~d~ 67 (180)
+.+..-+.++.+.||+|+|+|.++..+.... ++....|+|. ++.++..++ ..+..++.+|-
T Consensus 74 e~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDg 153 (237)
T KOG1661|consen 74 EYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDG 153 (237)
T ss_pred HHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCc
Confidence 3333346788999999999999999887552 3433489998 666666653 46778888887
Q ss_pred cc---cCCCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 68 FQ---FIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 68 ~~---~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
.. ...+||.|.+..... +..+++...|++ ||++++-
T Consensus 154 r~g~~e~a~YDaIhvGAaa~--------~~pq~l~dqL~~---gGrllip 192 (237)
T KOG1661|consen 154 RKGYAEQAPYDAIHVGAAAS--------ELPQELLDQLKP---GGRLLIP 192 (237)
T ss_pred cccCCccCCcceEEEccCcc--------ccHHHHHHhhcc---CCeEEEe
Confidence 55 234699999975543 567788889999 9999884
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.5e-07 Score=68.89 Aligned_cols=101 Identities=17% Similarity=0.214 Sum_probs=70.2
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCC-CCeEEEeeCch-hhccCCC----CCCeeE--EecCCc---ccCCCccEEEecccc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFP-GIKCTVLDLPH-AVTDMPQ----TDNLKY--IEGDMF---QFIPPSDAFFFKTVF 83 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~~~~D~~~-~~~~a~~----~~~~~~--~~~d~~---~~~~~~D~v~~~~~l 83 (180)
.+.+|||+|+|+|..+-+..+.++ ..+++.+|.|. |++.++. ..+... ...+.. .+....|+|+++++|
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~L 112 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYVL 112 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehhh
Confidence 467899999999998877777765 45789999976 7776653 111110 011111 133356999999999
Q ss_pred ccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCC
Q 030291 84 HFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDE 120 (180)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~ 120 (180)
..+++..+..+++++.+.+. +.++++|...+.
T Consensus 113 ~EL~~~~r~~lv~~LW~~~~-----~~LVlVEpGt~~ 144 (274)
T PF09243_consen 113 NELPSAARAELVRSLWNKTA-----PVLVLVEPGTPA 144 (274)
T ss_pred hcCCchHHHHHHHHHHHhcc-----CcEEEEcCCChH
Confidence 99999777788888888764 588888865443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.7e-06 Score=60.03 Aligned_cols=131 Identities=14% Similarity=0.088 Sum_probs=90.8
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCC-eEEEeeCc-hhhccCCC--------CCCeeEEecCCcc---c--CCCccEEE
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGI-KCTVLDLP-HAVTDMPQ--------TDNLKYIEGDMFQ---F--IPPSDAFF 78 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~-~~~~~D~~-~~~~~a~~--------~~~~~~~~~d~~~---~--~~~~D~v~ 78 (180)
+.+.+|||...|.|.++...++. ++ .++.++.. ..++-|.- ..++.++.+|..+ . ..+||+|+
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 45789999999999999999888 55 78899984 47776652 3578999999976 2 23699988
Q ss_pred ec-cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHH
Q 030291 79 FK-TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFV 157 (180)
Q Consensus 79 ~~-~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 157 (180)
-- =-|.+........+.+++.++|+| ||.++=..-.+...-+ ..| -.....+.|+
T Consensus 211 HDPPRfS~AgeLYseefY~El~RiLkr---gGrlFHYvG~Pg~ryr---------G~d------------~~~gVa~RLr 266 (287)
T COG2521 211 HDPPRFSLAGELYSEEFYRELYRILKR---GGRLFHYVGNPGKRYR---------GLD------------LPKGVAERLR 266 (287)
T ss_pred eCCCccchhhhHhHHHHHHHHHHHcCc---CCcEEEEeCCCCcccc---------cCC------------hhHHHHHHHH
Confidence 51 112222344455899999999999 8888764422211100 001 2356778999
Q ss_pred HcCCeEEEEeecC
Q 030291 158 NAGFTHYKIAPIF 170 (180)
Q Consensus 158 ~aGf~~~~~~~~~ 170 (180)
++||+++......
T Consensus 267 ~vGF~~v~~~~~~ 279 (287)
T COG2521 267 RVGFEVVKKVREA 279 (287)
T ss_pred hcCceeeeeehhc
Confidence 9999988766543
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.48 E-value=1e-06 Score=64.43 Aligned_cols=96 Identities=15% Similarity=0.163 Sum_probs=71.5
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCch-hhccCCC-------CCCeeEEecCCccc----------CCC
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQF----------IPP 73 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~----------~~~ 73 (180)
..++++|||||+++|..+..++... ++.+++.+|..+ ....|++ ..+++++.++..+. .+.
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 3568899999999999999998875 577999999944 6666653 57899999988652 146
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 74 SDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 74 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
||+|+.-.- ...-..+++.+.+.|+| |+++++|..
T Consensus 157 fD~iFiDad-----K~~Y~~y~~~~l~ll~~----GGviv~DNv 191 (247)
T PLN02589 157 FDFIFVDAD-----KDNYINYHKRLIDLVKV----GGVIGYDNT 191 (247)
T ss_pred ccEEEecCC-----HHHhHHHHHHHHHhcCC----CeEEEEcCC
Confidence 999998543 22234678888999999 455555533
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=9e-07 Score=62.73 Aligned_cols=94 Identities=13% Similarity=0.227 Sum_probs=62.4
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcccC----CCccEEEeccc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQFI----PPSDAFFFKTV 82 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~~----~~~D~v~~~~~ 82 (180)
..+.++||+|||+|.++..++... ..+++++|.++ +++.+++ ..+++++++|+.+.. ..||+|+++=-
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPP 130 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPP 130 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCC
Confidence 356799999999999998765554 35899999955 6665553 347899999986522 25999998544
Q ss_pred cccCChHHHHHHHHHHHH--hhccCCCCcEEEEE
Q 030291 83 FHFFDDEDCLKLLKKCRE--AIASNGERGKVLII 114 (180)
Q Consensus 83 l~~~~~~~~~~~l~~~~~--~L~p~~~~G~~~~~ 114 (180)
... . ....+++.+.+ +|+| ++.+++.
T Consensus 131 y~~-g--~~~~~l~~l~~~~~l~~---~~iv~ve 158 (199)
T PRK10909 131 FRK-G--LLEETINLLEDNGWLAD---EALIYVE 158 (199)
T ss_pred CCC-C--hHHHHHHHHHHCCCcCC---CcEEEEE
Confidence 321 1 11244555554 3777 5555543
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.4e-07 Score=66.88 Aligned_cols=82 Identities=17% Similarity=0.281 Sum_probs=60.0
Q ss_pred ccccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----CCCeeEEecCCcc-cCC---C
Q 030291 3 TLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----TDNLKYIEGDMFQ-FIP---P 73 (180)
Q Consensus 3 ~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----~~~~~~~~~d~~~-~~~---~ 73 (180)
+.+++... ..+.+.|||||+|.|.+|..|++. ..+++++|+.. +.+..++ ..+++++.+|++. +.+ .
T Consensus 20 ~kIv~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~ 95 (259)
T COG0030 20 DKIVEAAN--ISPGDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQ 95 (259)
T ss_pred HHHHHhcC--CCCCCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcC
Confidence 34555555 666899999999999999999999 45599999854 5555543 5889999999977 455 4
Q ss_pred ccEEEeccccccCChH
Q 030291 74 SDAFFFKTVFHFFDDE 89 (180)
Q Consensus 74 ~D~v~~~~~l~~~~~~ 89 (180)
++.|+++-- +++..+
T Consensus 96 ~~~vVaNlP-Y~Issp 110 (259)
T COG0030 96 PYKVVANLP-YNISSP 110 (259)
T ss_pred CCEEEEcCC-CcccHH
Confidence 677776543 344443
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.42 E-value=9.9e-07 Score=71.06 Aligned_cols=98 Identities=10% Similarity=0.125 Sum_probs=70.0
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcc---cC--CCccEEEeccc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ---FI--PPSDAFFFKTV 82 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~---~~--~~~D~v~~~~~ 82 (180)
....+||||||.|.++..+++.+|+..++|+|... .+.++.+ ..|+.+.+.|+.. .+ .+.|.|+.++.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 46788999999999999999999999999999943 3333321 4678888777621 22 35888887443
Q ss_pred cccCCh------HHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 83 FHFFDD------EDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 83 l~~~~~------~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
==+... -....+++.+.+.|+| ||.+.+..
T Consensus 427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~---gG~i~~~T 462 (506)
T PRK01544 427 DPWIKNKQKKKRIFNKERLKILQDKLKD---NGNLVFAS 462 (506)
T ss_pred CCCCCCCCccccccCHHHHHHHHHhcCC---CCEEEEEc
Confidence 111110 1234889999999999 88888754
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.42 E-value=5.9e-07 Score=65.83 Aligned_cols=99 Identities=16% Similarity=0.179 Sum_probs=71.3
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----------CCCeeEEecCCcc----cCC-CccEE
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----------TDNLKYIEGDMFQ----FIP-PSDAF 77 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----------~~~~~~~~~d~~~----~~~-~~D~v 77 (180)
+++++||=||.|.|..++.+++..+..+++.+|+.+ +++.+++ .+|++++..|... ... .||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 468999999999999999999887678999999955 7777764 4689999999855 233 69999
Q ss_pred EeccccccCCh--HHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 78 FFKTVFHFFDD--EDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 78 ~~~~~l~~~~~--~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
+.-..-...+. .-..++++.+++.|+| +|.+++..
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~---~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKP---DGVLVLQA 191 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCC---CcEEEEEc
Confidence 98332211111 1234889999999999 66666543
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.1e-07 Score=71.08 Aligned_cols=91 Identities=16% Similarity=0.244 Sum_probs=63.9
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCccc-----C--CCccEEE
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQF-----I--PPSDAFF 78 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~-----~--~~~D~v~ 78 (180)
..+..+|||+|||+|.++..+++.. .+++++|.++ +++.+++ ..+++++++|+.+. . ..||+|+
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi 367 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLL 367 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence 4566899999999999999998874 4799999965 8888775 35899999998542 1 2489998
Q ss_pred eccccccCChHHHHHHHHHHHHhhccCCCCcEEEE
Q 030291 79 FKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 79 ~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
+.-.= ..-. ..+++.+.+ ++| ++.+++
T Consensus 368 ~dPPr--~G~~--~~~l~~l~~-l~~---~~ivyv 394 (431)
T TIGR00479 368 LDPPR--KGCA--AEVLRTIIE-LKP---ERIVYV 394 (431)
T ss_pred ECcCC--CCCC--HHHHHHHHh-cCC---CEEEEE
Confidence 73220 1101 255666554 778 665555
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.1e-06 Score=61.37 Aligned_cols=89 Identities=21% Similarity=0.337 Sum_probs=67.8
Q ss_pred eEEEeCCcccHHHHHHHHHCCCCeEEEeeCch----hhccCCC---CCCeeEEecCCcc--cCCCccEEEeccccccCCh
Q 030291 18 SMVDVGGGTGAFARIISEAFPGIKCTVLDLPH----AVTDMPQ---TDNLKYIEGDMFQ--FIPPSDAFFFKTVFHFFDD 88 (180)
Q Consensus 18 ~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~----~~~~a~~---~~~~~~~~~d~~~--~~~~~D~v~~~~~l~~~~~ 88 (180)
+++|||+|.|.-+..++=.+|..+++.+|... .+..+.. ..|+++++..+.+ ....||+|++..+- +
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~----~ 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVA----P 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSS----S
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhc----C
Confidence 89999999999999999999999999999833 3333332 6789999999966 33469999998774 2
Q ss_pred HHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 89 EDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 89 ~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
.. .+++.+...+++ ||.+++.-
T Consensus 127 l~--~l~~~~~~~l~~---~G~~l~~K 148 (184)
T PF02527_consen 127 LD--KLLELARPLLKP---GGRLLAYK 148 (184)
T ss_dssp HH--HHHHHHGGGEEE---EEEEEEEE
T ss_pred HH--HHHHHHHHhcCC---CCEEEEEc
Confidence 33 778999999999 78777753
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.8e-07 Score=63.55 Aligned_cols=102 Identities=16% Similarity=0.195 Sum_probs=59.1
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCC---------------CCCCeeEEecCC
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMP---------------QTDNLKYIEGDM 67 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~---------------~~~~~~~~~~d~ 67 (180)
.+++.+. +.+.+..+|||||.|......+...+-.+.+|+|+.+ ....++ ...++++..+|+
T Consensus 33 ~il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf 110 (205)
T PF08123_consen 33 KILDELN--LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF 110 (205)
T ss_dssp HHHHHTT----TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T
T ss_pred HHHHHhC--CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc
Confidence 4556666 7889999999999999888776665444599999843 332222 146788899999
Q ss_pred ccc------CCCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 68 FQF------IPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 68 ~~~------~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
.+. ....|+|+++... +++ +.-..|.+....||+ |..+++
T Consensus 111 l~~~~~~~~~s~AdvVf~Nn~~--F~~-~l~~~L~~~~~~lk~----G~~IIs 156 (205)
T PF08123_consen 111 LDPDFVKDIWSDADVVFVNNTC--FDP-DLNLALAELLLELKP----GARIIS 156 (205)
T ss_dssp TTHHHHHHHGHC-SEEEE--TT--T-H-HHHHHHHHHHTTS-T----T-EEEE
T ss_pred cccHhHhhhhcCCCEEEEeccc--cCH-HHHHHHHHHHhcCCC----CCEEEE
Confidence 762 2468999998764 333 333456777788998 444554
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.7e-06 Score=62.62 Aligned_cols=88 Identities=10% Similarity=0.135 Sum_probs=67.3
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----------CCCeeEEecCCccc-CCCccEEEecc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----------TDNLKYIEGDMFQF-IPPSDAFFFKT 81 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----------~~~~~~~~~d~~~~-~~~~D~v~~~~ 81 (180)
+++++||=||+|.|..++.++++- .+++.+|+.+ +++.+++ .+|++++.. +.+. ...||+|++-.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIvDs 147 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYD--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIICLQ 147 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcC--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEEcC
Confidence 678999999999999999999984 3899999955 8877775 577777652 3222 24699999865
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
. .++ .+.+.++++|+| ||.++..
T Consensus 148 ~----~~~---~fy~~~~~~L~~---~Gi~v~Q 170 (262)
T PRK00536 148 E----PDI---HKIDGLKRMLKE---DGVFISV 170 (262)
T ss_pred C----CCh---HHHHHHHHhcCC---CcEEEEC
Confidence 4 222 778999999999 6666553
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.6e-07 Score=65.89 Aligned_cols=98 Identities=16% Similarity=0.141 Sum_probs=74.2
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcc-c--CCCccEEEeccccccCCh
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQ-F--IPPSDAFFFKTVFHFFDD 88 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~-~--~~~~D~v~~~~~l~~~~~ 88 (180)
.+.+..++|+|||.|-.... .|.+..++.|++. .+.-+++.+......+|+.. + ..++|.+++..++||+..
T Consensus 43 ~~~gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT 118 (293)
T KOG1331|consen 43 QPTGSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLST 118 (293)
T ss_pred cCCcceeeecccCCcccCcC----CCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhh
Confidence 34578899999999876543 3778899999976 55555543332566677755 2 236999999999999986
Q ss_pred HH-HHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 89 ED-CLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 89 ~~-~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
.. +.++++++.+.++| ||..++..+.
T Consensus 119 ~~RR~~~l~e~~r~lrp---gg~~lvyvwa 145 (293)
T KOG1331|consen 119 RERRERALEELLRVLRP---GGNALVYVWA 145 (293)
T ss_pred HHHHHHHHHHHHHHhcC---CCceEEEEeh
Confidence 54 55899999999999 9998886654
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.2e-06 Score=69.41 Aligned_cols=94 Identities=22% Similarity=0.305 Sum_probs=61.9
Q ss_pred CCeEEEeCCcccHHHHHHHHHC----CCCeEEEeeCch-hhccC----C--C-CCCeeEEecCCcc-cCC-CccEEEecc
Q 030291 16 LRSMVDVGGGTGAFARIISEAF----PGIKCTVLDLPH-AVTDM----P--Q-TDNLKYIEGDMFQ-FIP-PSDAFFFKT 81 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~~----~~~~~~~~D~~~-~~~~a----~--~-~~~~~~~~~d~~~-~~~-~~D~v~~~~ 81 (180)
...|+|||||+|.++.+.++.. ...+++++|-+. +.... + . ..+|+++++|+.+ ..| .+|+|++-.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSEl 266 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSEL 266 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE--
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEec
Confidence 4679999999999987766553 346899999854 22221 1 1 5889999999976 334 699999844
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEE
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
+=....++...+.|....+.||| |++.+
T Consensus 267 LGsfg~nEl~pE~Lda~~rfLkp----~Gi~I 294 (448)
T PF05185_consen 267 LGSFGDNELSPECLDAADRFLKP----DGIMI 294 (448)
T ss_dssp -BTTBTTTSHHHHHHHGGGGEEE----EEEEE
T ss_pred cCCccccccCHHHHHHHHhhcCC----CCEEe
Confidence 42233344455778888899999 46655
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.31 E-value=1e-06 Score=64.50 Aligned_cols=136 Identities=13% Similarity=0.179 Sum_probs=79.4
Q ss_pred CCCeEEEeCCcccHHHHH-HHHHCCCCeEEEeeCch-hhccCC----C------------------------------CC
Q 030291 15 GLRSMVDVGGGTGAFARI-ISEAFPGIKCTVLDLPH-AVTDMP----Q------------------------------TD 58 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~-l~~~~~~~~~~~~D~~~-~~~~a~----~------------------------------~~ 58 (180)
++.++||||||+-..... +++.+ ..++..|..+ ..+..+ + ..
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f--~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWF--EEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTE--EEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhh--cceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 467899999999544322 12222 2478888733 433221 1 12
Q ss_pred Cee-EEecCCccc--------CC-CccEEEeccccccCC--hHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchh
Q 030291 59 NLK-YIEGDMFQF--------IP-PSDAFFFKTVFHFFD--DEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRE 126 (180)
Q Consensus 59 ~~~-~~~~d~~~~--------~~-~~D~v~~~~~l~~~~--~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~ 126 (180)
.+. ++..|+.++ .| .+|+|++.++++... .+.....++++.++||| ||.+++........
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkp---GG~Lil~~~l~~t~----- 205 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKP---GGHLILAGVLGSTY----- 205 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEE---EEEEEEEEESS-SE-----
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCC---CcEEEEEEEcCcee-----
Confidence 233 566777551 23 399999999998764 34567889999999999 88888876532110
Q ss_pred hhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEEEEee
Q 030291 127 LTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAP 168 (180)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 168 (180)
..+ +....+.-..+.+.+++.++++||.+.+...
T Consensus 206 -----Y~v---G~~~F~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 206 -----YMV---GGHKFPCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp -----EEE---TTEEEE---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred -----EEE---CCEecccccCCHHHHHHHHHHcCCEEEeccc
Confidence 000 0001112346889999999999999988774
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.2e-06 Score=66.66 Aligned_cols=90 Identities=17% Similarity=0.168 Sum_probs=61.6
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcccC----CCccEEEecccc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQFI----PPSDAFFFKTVF 83 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~~----~~~D~v~~~~~l 83 (180)
++.+|||++||+|.++..++.. ..+++++|.++ +++.+++ ..++++.++|+.+.. ..||+|++.=--
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr 310 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPR 310 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCC
Confidence 4578999999999999999865 56899999965 7777764 347899999985422 359999884221
Q ss_pred ccCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 84 HFFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
. .-.. ++++.+. .++| ++.++++
T Consensus 311 ~--G~~~--~~l~~l~-~~~p---~~ivyvs 333 (374)
T TIGR02085 311 R--GIGK--ELCDYLS-QMAP---KFILYSS 333 (374)
T ss_pred C--CCcH--HHHHHHH-hcCC---CeEEEEE
Confidence 1 1111 4455554 4678 5555553
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00016 Score=54.93 Aligned_cols=84 Identities=15% Similarity=0.217 Sum_probs=67.1
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCCCCCeeEEecCCcccC---CCccEEEeccccccCChH
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQFI---PPSDAFFFKTVFHFFDDE 89 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~d~~~~~---~~~D~v~~~~~l~~~~~~ 89 (180)
+.++.++|||||++|.++..+++. +.+++++|...+-......++++....|..... ..+|+++|-.+- .+
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve----~P 282 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVE----KP 282 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEeccc----CH
Confidence 467889999999999999999998 669999998777666677889999988886633 259999986653 34
Q ss_pred HHHHHHHHHHHhhcc
Q 030291 90 DCLKLLKKCREAIAS 104 (180)
Q Consensus 90 ~~~~~l~~~~~~L~p 104 (180)
. .+.+-+.++|..
T Consensus 283 ~--rva~lm~~Wl~~ 295 (357)
T PRK11760 283 A--RVAELMAQWLVN 295 (357)
T ss_pred H--HHHHHHHHHHhc
Confidence 4 557778888876
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.4e-06 Score=63.14 Aligned_cols=79 Identities=15% Similarity=0.189 Sum_probs=62.4
Q ss_pred CcccccccccccccCCCeEEEeCCcccHHHHHHHHHCC-CCeEEEeeCch-hhccCCC----CCCeeEEecCCccc---C
Q 030291 1 MATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFP-GIKCTVLDLPH-AVTDMPQ----TDNLKYIEGDMFQF---I 71 (180)
Q Consensus 1 ~~~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~~~~D~~~-~~~~a~~----~~~~~~~~~d~~~~---~ 71 (180)
|++++++.+. ..++..++|.+||.|..+..+++..+ ..+++++|.++ +++.+++ ..+++++++|+.+. .
T Consensus 7 ll~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l 84 (296)
T PRK00050 7 LLDEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVL 84 (296)
T ss_pred cHHHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHH
Confidence 3456777776 67788999999999999999999985 68999999955 8888765 25899999999541 1
Q ss_pred ----CCccEEEecc
Q 030291 72 ----PPSDAFFFKT 81 (180)
Q Consensus 72 ----~~~D~v~~~~ 81 (180)
+.+|.|++..
T Consensus 85 ~~~~~~vDgIl~DL 98 (296)
T PRK00050 85 AEGLGKVDGILLDL 98 (296)
T ss_pred HcCCCccCEEEECC
Confidence 2699988843
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.8e-05 Score=54.20 Aligned_cols=123 Identities=14% Similarity=0.217 Sum_probs=81.0
Q ss_pred EEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccCC--C-ccEEEeccccccCC
Q 030291 19 MVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFIP--P-SDAFFFKTVFHFFD 87 (180)
Q Consensus 19 iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~~--~-~D~v~~~~~l~~~~ 87 (180)
|.||||-.|.+...|.+...-.++++.|+++ -++.|++ ..++++..+|=++.++ . .|.|+..+| .
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM----G 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGM----G 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-----
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecC----C
Confidence 6899999999999999997666899999955 7777764 5789999999767543 3 888888776 3
Q ss_pred hHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEEEEe
Q 030291 88 DEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIA 167 (180)
Q Consensus 88 ~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 167 (180)
.....++|++....++. ...+++ .+ ......++..|.+.||.+++..
T Consensus 77 G~lI~~ILe~~~~~~~~---~~~lIL-qP-----------------------------~~~~~~LR~~L~~~gf~I~~E~ 123 (205)
T PF04816_consen 77 GELIIEILEAGPEKLSS---AKRLIL-QP-----------------------------NTHAYELRRWLYENGFEIIDED 123 (205)
T ss_dssp HHHHHHHHHHTGGGGTT-----EEEE-EE-----------------------------SS-HHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHhhHHHhcc---CCeEEE-eC-----------------------------CCChHHHHHHHHHCCCEEEEeE
Confidence 34455677777666655 334443 11 1244778899999999987654
Q ss_pred ec---CCceeEEEE
Q 030291 168 PI---FGIKSLIEV 178 (180)
Q Consensus 168 ~~---~~~~~~~~~ 178 (180)
-. ..++.++.+
T Consensus 124 lv~e~~~~YeIi~~ 137 (205)
T PF04816_consen 124 LVEENGRFYEIIVA 137 (205)
T ss_dssp EEEETTEEEEEEEE
T ss_pred EEeECCEEEEEEEE
Confidence 33 224444444
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=9.6e-05 Score=56.32 Aligned_cols=97 Identities=19% Similarity=0.288 Sum_probs=73.2
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeC-chhhccCCC-------------CCCeeEEecCCcccC----CCc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDL-PHAVTDMPQ-------------TDNLKYIEGDMFQFI----PPS 74 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~-------------~~~~~~~~~d~~~~~----~~~ 74 (180)
.+...++|-+|+|.|...+.+++.-.--+++.+|+ |+|++-++. .+|++++..|..+.. ..|
T Consensus 287 ~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 287 VRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred ccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 46788999999999999999887643568999999 669988873 578999999987632 259
Q ss_pred cEEEecc------ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 75 DAFFFKT------VFHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 75 D~v~~~~------~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
|.||.-. ++.. ....++..-+++.|++ +|.+++..
T Consensus 367 D~vIVDl~DP~tps~~r---lYS~eFY~ll~~~l~e---~Gl~VvQa 407 (508)
T COG4262 367 DVVIVDLPDPSTPSIGR---LYSVEFYRLLSRHLAE---TGLMVVQA 407 (508)
T ss_pred cEEEEeCCCCCCcchhh---hhhHHHHHHHHHhcCc---CceEEEec
Confidence 9998721 2211 1233788889999999 77777643
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.08 E-value=1e-05 Score=58.29 Aligned_cols=98 Identities=17% Similarity=0.317 Sum_probs=73.4
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCC----CeEEEeeCch-hhccCC-----C--CCCeeEEecCCccc---CC---Ccc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPG----IKCTVLDLPH-AVTDMP-----Q--TDNLKYIEGDMFQF---IP---PSD 75 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~----~~~~~~D~~~-~~~~a~-----~--~~~~~~~~~d~~~~---~~---~~D 75 (180)
-++.+.+|+|+|+..-++.|+..+.. .+++.+|++. .+.... + .-.+.-+++|+... +| +-=
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl 156 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRL 156 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEE
Confidence 45789999999999999988877643 7899999976 333222 1 33455667787432 22 233
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 76 AFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 76 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
.++..+++..+.+.++..+|.+++.+|+| |..+++-
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~p---Gd~~LlG 192 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRP---GDYFLLG 192 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCC---cceEEEe
Confidence 56668889999999999999999999999 8888774
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.6e-06 Score=68.24 Aligned_cols=98 Identities=16% Similarity=0.223 Sum_probs=63.1
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCc---h-hhccCCCCCCeeEEecCC-cc--cCC--CccEEEeccccc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLP---H-AVTDMPQTDNLKYIEGDM-FQ--FIP--PSDAFFFKTVFH 84 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~---~-~~~~a~~~~~~~~~~~d~-~~--~~~--~~D~v~~~~~l~ 84 (180)
..-+++||+|||+|.++..|++. +.....+-+. + .++.|.+ ..+....+-+ .. +.| .||+|.|+.++.
T Consensus 116 g~iR~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfale-RGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i 192 (506)
T PF03141_consen 116 GGIRTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALE-RGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLI 192 (506)
T ss_pred CceEEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhh-cCcchhhhhhccccccCCccchhhhhcccccc
Confidence 34467899999999999999998 5333333321 1 2223322 1232222222 11 333 599999988876
Q ss_pred cCCh-HHHHHHHHHHHHhhccCCCCcEEEEEEeeeC
Q 030291 85 FFDD-EDCLKLLKKCREAIASNGERGKVLIIDIVID 119 (180)
Q Consensus 85 ~~~~-~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~ 119 (180)
.+.. .. -+|-++-|+|+| ||.++++.+...
T Consensus 193 ~W~~~~g--~~l~evdRvLRp---GGyfv~S~ppv~ 223 (506)
T PF03141_consen 193 PWHPNDG--FLLFEVDRVLRP---GGYFVLSGPPVY 223 (506)
T ss_pred cchhccc--ceeehhhhhhcc---CceEEecCCccc
Confidence 6654 34 579999999999 999999876443
|
; GO: 0008168 methyltransferase activity |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.06 E-value=7.7e-06 Score=57.17 Aligned_cols=94 Identities=18% Similarity=0.262 Sum_probs=56.6
Q ss_pred CCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCchhhccCCCCCCeeEEecCCcc---------cC----CCccEEEec
Q 030291 15 GLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQ---------FI----PPSDAFFFK 80 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~a~~~~~~~~~~~d~~~---------~~----~~~D~v~~~ 80 (180)
+..++||+||++|.++..+++.. +..+++++|+..+.. ..++...++|+.+ .. ..+|+|++-
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~----~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D 98 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDP----LQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLSD 98 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-----TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE-
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccccc----ccceeeeecccchhhHHHhhhhhccccccCcceeccc
Confidence 45899999999999999999986 567899999855311 1334444555432 11 369999986
Q ss_pred cccccCCh---------HHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 81 TVFHFFDD---------EDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 81 ~~l~~~~~---------~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
.......+ ......+.-+.+.|+| ||.+++--
T Consensus 99 ~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~---gG~~v~K~ 139 (181)
T PF01728_consen 99 MAPNVSGDRNIDEFISIRLILSQLLLALELLKP---GGTFVIKV 139 (181)
T ss_dssp ------SSHHSSHHHHHHHHHHHHHHHHHHHCT---TEEEEEEE
T ss_pred cccCCCCchhhHHHHHHHHHHHHHHHHHhhhcC---CCEEEEEe
Confidence 63222211 1222344455577999 77666644
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00035 Score=49.05 Aligned_cols=137 Identities=10% Similarity=0.064 Sum_probs=92.9
Q ss_pred ccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-----hhccCCCCCCeeEEecCCcccC------CCcc
Q 030291 7 KDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-----AVTDMPQTDNLKYIEGDMFQFI------PPSD 75 (180)
Q Consensus 7 ~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-----~~~~a~~~~~~~~~~~d~~~~~------~~~D 75 (180)
+.++ ++++++||-+|+.+|.....+..-.+.-.+++++.+. .+..+++..|+-.+..|+..+. +..|
T Consensus 70 ~~~p--i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VD 147 (231)
T COG1889 70 KNFP--IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVD 147 (231)
T ss_pred ccCC--cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhccccc
Confidence 3455 8899999999999999999998887766889999843 4566667889999999995443 3588
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHH
Q 030291 76 AFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSL 155 (180)
Q Consensus 76 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (180)
+|+.--. +..+..-+..+....|++ +|.++++--...-. ... . .. .-.++-.+-
T Consensus 148 viy~DVA----Qp~Qa~I~~~Na~~FLk~---~G~~~i~iKArSId--------------vT~---d-p~-~vf~~ev~k 201 (231)
T COG1889 148 VIYQDVA----QPNQAEILADNAEFFLKK---GGYVVIAIKARSID--------------VTA---D-PE-EVFKDEVEK 201 (231)
T ss_pred EEEEecC----CchHHHHHHHHHHHhccc---CCeEEEEEEeeccc--------------ccC---C-HH-HHHHHHHHH
Confidence 8876221 233334567788999999 88887754322111 000 0 00 001222356
Q ss_pred HHHcCCeEEEEeecCC
Q 030291 156 FVNAGFTHYKIAPIFG 171 (180)
Q Consensus 156 l~~aGf~~~~~~~~~~ 171 (180)
|++.||++.+..+.-+
T Consensus 202 L~~~~f~i~e~~~LeP 217 (231)
T COG1889 202 LEEGGFEILEVVDLEP 217 (231)
T ss_pred HHhcCceeeEEeccCC
Confidence 7889999999988754
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.4e-05 Score=57.11 Aligned_cols=89 Identities=22% Similarity=0.352 Sum_probs=69.0
Q ss_pred CCeEEEeCCcccHHHHHHHHHCCCCeEEEeeC-ch---hhccCCC---CCCeeEEecCCcccC--CC-ccEEEecccccc
Q 030291 16 LRSMVDVGGGTGAFARIISEAFPGIKCTVLDL-PH---AVTDMPQ---TDNLKYIEGDMFQFI--PP-SDAFFFKTVFHF 85 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~-~~---~~~~a~~---~~~~~~~~~d~~~~~--~~-~D~v~~~~~l~~ 85 (180)
+.+++|||+|.|.-+..++-.+|+.+++.+|. .+ .++.+.+ ..|++++++.+.+.. .. ||+|.+..+-.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva~- 146 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVAS- 146 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehccc-
Confidence 68999999999999999998889999999997 33 3444443 678999999885432 24 99999977642
Q ss_pred CChHHHHHHHHHHHHhhccCCCCcEEEE
Q 030291 86 FDDEDCLKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
- ..+++-+...+++ ||+++.
T Consensus 147 ---L--~~l~e~~~pllk~---~g~~~~ 166 (215)
T COG0357 147 ---L--NVLLELCLPLLKV---GGGFLA 166 (215)
T ss_pred ---h--HHHHHHHHHhccc---CCcchh
Confidence 2 2667888899998 777765
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.2e-05 Score=62.43 Aligned_cols=98 Identities=19% Similarity=0.279 Sum_probs=74.3
Q ss_pred CCeEEEeCCcccHHHHHHHHHCCCC-eEEEeeCch-hhccCCC--------CCCeeEEecCCcccC-------CCccEEE
Q 030291 16 LRSMVDVGGGTGAFARIISEAFPGI-KCTVLDLPH-AVTDMPQ--------TDNLKYIEGDMFQFI-------PPSDAFF 78 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~~~~~-~~~~~D~~~-~~~~a~~--------~~~~~~~~~d~~~~~-------~~~D~v~ 78 (180)
+++||++=|=||.++...+.. ++ +++.+|+|. .++.+++ ..++.++++|+++.+ ..||+|+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 889999999999999988877 66 899999987 9999985 466899999997732 2699999
Q ss_pred ec------cccccCC-hHHHHHHHHHHHHhhccCCCCcEEEEEEeee
Q 030291 79 FK------TVFHFFD-DEDCLKLLKKCREAIASNGERGKVLIIDIVI 118 (180)
Q Consensus 79 ~~------~~l~~~~-~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~ 118 (180)
+- .--..+. ......++..+.+.|+| ||.++++....
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~p---gG~l~~~s~~~ 339 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAP---GGTLVTSSCSR 339 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCC---CCEEEEEecCC
Confidence 71 1000011 12344789999999999 88888876543
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.00 E-value=4.4e-05 Score=53.78 Aligned_cols=95 Identities=11% Similarity=0.171 Sum_probs=61.4
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCccc---C---C-CccEEEe
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQF---I---P-PSDAFFF 79 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~---~---~-~~D~v~~ 79 (180)
.+.++||++||+|.++..++.... .+++++|.+. ++..+++ ..+++++++|+... . . .+|+|+.
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 467899999999999999999853 3799999955 6655543 34688999998542 1 1 2677776
Q ss_pred ccccccCChHHHHHHHHHHH--HhhccCCCCcEEEEEEee
Q 030291 80 KTVFHFFDDEDCLKLLKKCR--EAIASNGERGKVLIIDIV 117 (180)
Q Consensus 80 ~~~l~~~~~~~~~~~l~~~~--~~L~p~~~~G~~~~~~~~ 117 (180)
.=-+.. .. ...+++.+. .+|++ +.+++.+..
T Consensus 128 DPPy~~-~~--~~~~l~~l~~~~~l~~----~~iiv~E~~ 160 (189)
T TIGR00095 128 DPPFFN-GA--LQALLELCENNWILED----TVLIVVEED 160 (189)
T ss_pred CcCCCC-Cc--HHHHHHHHHHCCCCCC----CeEEEEEec
Confidence 222211 11 124455554 35776 556666543
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.4e-05 Score=59.50 Aligned_cols=92 Identities=16% Similarity=0.115 Sum_probs=68.7
Q ss_pred CCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCccc---CCCccEEEecccccc
Q 030291 16 LRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQF---IPPSDAFFFKTVFHF 85 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~---~~~~D~v~~~~~l~~ 85 (180)
..+|||++||+|.++..++...+..+++++|.++ +++.+++ ..++++.+.|+... ...||+|++.= .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C--
Confidence 3589999999999999998886556899999955 7776654 34566888888542 24699998842 1
Q ss_pred CChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 86 FDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
..+. .++....+.+++ +|.+.++..
T Consensus 135 -Gs~~--~~l~~al~~~~~---~gilyvSAt 159 (382)
T PRK04338 135 -GSPA--PFLDSAIRSVKR---GGLLCVTAT 159 (382)
T ss_pred -CCcH--HHHHHHHHHhcC---CCEEEEEec
Confidence 2333 678887788899 899999843
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00015 Score=55.11 Aligned_cols=99 Identities=16% Similarity=0.113 Sum_probs=71.2
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEec-CCcc-cCCC--ccEEEec-
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEG-DMFQ-FIPP--SDAFFFK- 80 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~-d~~~-~~~~--~D~v~~~- 80 (180)
...+..|||-=||||.+.....-. +++++|.|+.. |+.-++. -....+... |+.. +++. +|.|++-
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDP 272 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDP 272 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecC
Confidence 567789999999999999887666 88899999976 8888875 134444444 7744 4443 9999872
Q ss_pred -----cccccCC-hHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 81 -----TVFHFFD-DEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 81 -----~~l~~~~-~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
....-.. +....++++.+.++|++ ||++++..+
T Consensus 273 PYGrst~~~~~~l~~Ly~~~le~~~evLk~---gG~~vf~~p 311 (347)
T COG1041 273 PYGRSTKIKGEGLDELYEEALESASEVLKP---GGRIVFAAP 311 (347)
T ss_pred CCCcccccccccHHHHHHHHHHHHHHHhhc---CcEEEEecC
Confidence 1111111 34456889999999999 888888653
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.98 E-value=7e-05 Score=55.83 Aligned_cols=134 Identities=13% Similarity=0.054 Sum_probs=83.0
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCc-------h-hhccCCC------------------------------
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLP-------H-AVTDMPQ------------------------------ 56 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~-------~-~~~~a~~------------------------------ 56 (180)
.+.+||--|||.|.++..++..++.++. =+.| . ++..++.
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~~~qG--NEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD 227 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGFKCQG--NEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD 227 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhcccccc--cHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence 3678999999999999999887544322 1211 1 1211110
Q ss_pred ---------CCCeeEEecCCccc--CC----CccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCC
Q 030291 57 ---------TDNLKYIEGDMFQF--IP----PSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEK 121 (180)
Q Consensus 57 ---------~~~~~~~~~d~~~~--~~----~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~ 121 (180)
.++.+.-.+|+.+. .+ .||+|+..+.+..-.+-- +++..+...|+| ||..+=..+..-.-
T Consensus 228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~Nil--eYi~tI~~iLk~---GGvWiNlGPLlYHF 302 (369)
T KOG2798|consen 228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNIL--EYIDTIYKILKP---GGVWINLGPLLYHF 302 (369)
T ss_pred ccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHH--HHHHHHHHhccC---CcEEEeccceeeec
Confidence 23444456777662 22 499999988877665555 899999999999 55554443321110
Q ss_pred CCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEEEEe
Q 030291 122 EDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIA 167 (180)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 167 (180)
. +.........-..+.+++..+.+..||++.+..
T Consensus 303 ~------------d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 303 E------------DTHGVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred c------------CCCCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 0 000001111234688999999999999987665
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.98 E-value=8.5e-05 Score=52.50 Aligned_cols=107 Identities=16% Similarity=0.233 Sum_probs=73.0
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCchhhccCCCCCCeeEEecCCccc---------CC-
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQF---------IP- 72 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~a~~~~~~~~~~~d~~~~---------~~- 72 (180)
+|.+.+ ..+.++.+|+|||+..|.++..+++.. +...++++|+.++-. .+++.++++|+..+ .+
T Consensus 35 el~~k~-~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~----~~~V~~iq~d~~~~~~~~~l~~~l~~ 109 (205)
T COG0293 35 ELNEKF-KLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP----IPGVIFLQGDITDEDTLEKLLEALGG 109 (205)
T ss_pred HHHHhc-CeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc----CCCceEEeeeccCccHHHHHHHHcCC
Confidence 344555 357889999999999999999888774 455699999855322 34599999999652 12
Q ss_pred -CccEEEecccc--------ccCCh-HHHHHHHHHHHHhhccCCCCcEEEEEEeee
Q 030291 73 -PSDAFFFKTVF--------HFFDD-EDCLKLLKKCREAIASNGERGKVLIIDIVI 118 (180)
Q Consensus 73 -~~D~v~~~~~l--------~~~~~-~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~ 118 (180)
.+|+|++-..- +|... ......+.-+..+|+| ||.+++-.+-.
T Consensus 110 ~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~---~G~fv~K~fqg 162 (205)
T COG0293 110 APVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKP---GGSFVAKVFQG 162 (205)
T ss_pred CCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCC---CCeEEEEEEeC
Confidence 36999973322 22221 2233556667789999 88888766543
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.95 E-value=4e-06 Score=64.68 Aligned_cols=51 Identities=16% Similarity=0.320 Sum_probs=42.1
Q ss_pred CeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcc
Q 030291 17 RSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ 69 (180)
Q Consensus 17 ~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~ 69 (180)
.++||++||+|.++..+++.. .+++++|.+. +++.+++ ..++++.++|+.+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 479999999999999888885 3799999965 8888775 2478899998854
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00011 Score=52.42 Aligned_cols=95 Identities=17% Similarity=0.225 Sum_probs=70.5
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCC-CCeEEEeeCch-hhccCCC-------CCCeeEEecCCccc---------CCCc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFP-GIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQF---------IPPS 74 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~---------~~~~ 74 (180)
+-+++++||||.=+|.-+..++...| +.+++++|+.. ..+.+.. ...++++++...+. .+.|
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf 150 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF 150 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence 34688999999999999999888764 67999999854 5555542 67899999988652 2369
Q ss_pred cEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 75 DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 75 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
|.+|. .+..+... .++.++.+++++ |+++++|.
T Consensus 151 DfaFv----DadK~nY~-~y~e~~l~Llr~----GGvi~~DN 183 (237)
T KOG1663|consen 151 DFAFV----DADKDNYS-NYYERLLRLLRV----GGVIVVDN 183 (237)
T ss_pred eEEEE----ccchHHHH-HHHHHHHhhccc----ccEEEEec
Confidence 99987 44444433 789999999999 55555554
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00019 Score=50.04 Aligned_cols=144 Identities=17% Similarity=0.077 Sum_probs=85.5
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCchhhccCCC-------------CCCeeEEecCCcc
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPHAVTDMPQ-------------TDNLKYIEGDMFQ 69 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~a~~-------------~~~~~~~~~d~~~ 69 (180)
+++..+. ++++.+|+|+=.|.|++++.+.... |.-.++++=..+....+.. ..|.+.+-.....
T Consensus 39 E~L~FaG--lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A 116 (238)
T COG4798 39 EVLAFAG--LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVA 116 (238)
T ss_pred ceeEEec--cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccc
Confidence 4566666 8999999999999999999998874 4445554433222111111 2333333332222
Q ss_pred --cCCCccEEEeccccc-----cCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeec
Q 030291 70 --FIPPSDAFFFKTVFH-----FFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNV 142 (180)
Q Consensus 70 --~~~~~D~v~~~~~l~-----~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (180)
.....|+++.+..-| .++.....++.+.+.++||| ||.+++.|.......... +. .
T Consensus 117 ~~~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKP---GGv~~V~dH~a~pG~~~~---------dt-----~ 179 (238)
T COG4798 117 LGAPQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKP---GGVYLVEDHRADPGSGLS---------DT-----I 179 (238)
T ss_pred cCCCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCC---CcEEEEEeccccCCCChh---------hh-----h
Confidence 122466666532222 12233445889999999999 888888776554432211 00 0
Q ss_pred CCcccCHHHHHHHHHHcCCeEEEE
Q 030291 143 GGKERTEQEWGSLFVNAGFTHYKI 166 (180)
Q Consensus 143 ~~~~~~~~~~~~~l~~aGf~~~~~ 166 (180)
.....+.....+..+++||+....
T Consensus 180 ~~~ri~~a~V~a~veaaGFkl~ae 203 (238)
T COG4798 180 TLHRIDPAVVIAEVEAAGFKLEAE 203 (238)
T ss_pred hhcccChHHHHHHHHhhcceeeee
Confidence 113356777888999999987643
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.92 E-value=2.9e-05 Score=55.04 Aligned_cols=86 Identities=19% Similarity=0.269 Sum_probs=60.5
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeC-chhhccCCC-------CCCeeEEecCCcccC--CCccEEEeccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDL-PHAVTDMPQ-------TDNLKYIEGDMFQFI--PPSDAFFFKTV 82 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~-------~~~~~~~~~d~~~~~--~~~D~v~~~~~ 82 (180)
..++.+|+|.-||-|.++..+++..+...++++|+ |...+..++ ..++...++|..+.. ..+|-|+++..
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp 178 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLP 178 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--T
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECCh
Confidence 46789999999999999999999777888999999 446666553 577899999996643 35999888543
Q ss_pred cccCChHHHHHHHHHHHHhhcc
Q 030291 83 FHFFDDEDCLKLLKKCREAIAS 104 (180)
Q Consensus 83 l~~~~~~~~~~~l~~~~~~L~p 104 (180)
- ... .+|..+.+.+++
T Consensus 179 ~----~~~--~fl~~~~~~~~~ 194 (200)
T PF02475_consen 179 E----SSL--EFLDAALSLLKE 194 (200)
T ss_dssp S----SGG--GGHHHHHHHEEE
T ss_pred H----HHH--HHHHHHHHHhcC
Confidence 2 122 678889999998
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=3.1e-05 Score=53.60 Aligned_cols=93 Identities=13% Similarity=0.211 Sum_probs=69.3
Q ss_pred CCeEEEeCCcccHHHHHHHHHCCCCeEEEeeC-chhhccCCC------CCCeeEEecCCcc-cCCCccEEEeccccccCC
Q 030291 16 LRSMVDVGGGTGAFARIISEAFPGIKCTVLDL-PHAVTDMPQ------TDNLKYIEGDMFQ-FIPPSDAFFFKTVFHFFD 87 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~------~~~~~~~~~d~~~-~~~~~D~v~~~~~l~~~~ 87 (180)
.+.+.|+|+|+|.++...++. --++++++. |.....+.+ ..+++++.+|..+ .....|+|+|-..=..+-
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi 110 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALI 110 (252)
T ss_pred hhceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhh
Confidence 367899999999998877776 446999998 445444443 5789999999976 456799999855433334
Q ss_pred hHHHHHHHHHHHHhhccCCCCcEEEE
Q 030291 88 DEDCLKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 88 ~~~~~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
++.+..++..+...|+. ++.++=
T Consensus 111 ~E~qVpV~n~vleFLr~---d~tiiP 133 (252)
T COG4076 111 EEKQVPVINAVLEFLRY---DPTIIP 133 (252)
T ss_pred cccccHHHHHHHHHhhc---CCcccc
Confidence 45556788999999998 777664
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.87 E-value=6.6e-05 Score=54.89 Aligned_cols=92 Identities=13% Similarity=0.203 Sum_probs=70.7
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHH-CCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCccc----
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEA-FPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQF---- 70 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~-~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~---- 70 (180)
.|+..+. +.++++|+|-|.|+|.++.++++. .|.-+++.+|.-+ ..+++.+ ..++++.+-|+...
T Consensus 96 ~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ 173 (314)
T KOG2915|consen 96 MILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI 173 (314)
T ss_pred HHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence 4566677 899999999999999999999887 5777899999844 4455543 68899999999541
Q ss_pred -CCCccEEEeccccccCChHHHHHHHHHHHHhhcc
Q 030291 71 -IPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIAS 104 (180)
Q Consensus 71 -~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p 104 (180)
...+|.|+. -++.+. ..+.-+..+||.
T Consensus 174 ks~~aDaVFL-----DlPaPw--~AiPha~~~lk~ 201 (314)
T KOG2915|consen 174 KSLKADAVFL-----DLPAPW--EAIPHAAKILKD 201 (314)
T ss_pred cccccceEEE-----cCCChh--hhhhhhHHHhhh
Confidence 124888887 455666 558888889998
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.8e-05 Score=58.64 Aligned_cols=94 Identities=15% Similarity=0.221 Sum_probs=63.2
Q ss_pred cccccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----CCCeeEEecCCcccC-C---
Q 030291 2 ATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----TDNLKYIEGDMFQFI-P--- 72 (180)
Q Consensus 2 ~~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----~~~~~~~~~d~~~~~-~--- 72 (180)
++.+++.+. ..++..|+|||+|.|.+|..|++.. .+++++|..+ +....++ .++++++.+|++.-. +
T Consensus 19 ~~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~ 94 (262)
T PF00398_consen 19 ADKIVDALD--LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLL 94 (262)
T ss_dssp HHHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHC
T ss_pred HHHHHHhcC--CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhh
Confidence 345666666 6688999999999999999999995 7799999844 5444443 689999999997621 1
Q ss_pred --CccEEEeccccccCChHHHHHHHHHHHHhhcc
Q 030291 73 --PSDAFFFKTVFHFFDDEDCLKLLKKCREAIAS 104 (180)
Q Consensus 73 --~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p 104 (180)
....|+++-.. ++. ..++.++...-+.
T Consensus 95 ~~~~~~vv~NlPy-~is----~~il~~ll~~~~~ 123 (262)
T PF00398_consen 95 KNQPLLVVGNLPY-NIS----SPILRKLLELYRF 123 (262)
T ss_dssp SSSEEEEEEEETG-TGH----HHHHHHHHHHGGG
T ss_pred cCCceEEEEEecc-cch----HHHHHHHhhcccc
Confidence 23355554332 222 2556666664333
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00013 Score=54.08 Aligned_cols=147 Identities=16% Similarity=0.153 Sum_probs=92.2
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCC---------CCCeeEEecCCcccC----------C-C
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ---------TDNLKYIEGDMFQFI----------P-P 73 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~---------~~~~~~~~~d~~~~~----------~-~ 73 (180)
.+...|+.+|||.-....++.. .++.+++-+|.+++++..++ ..+..++..|+.+.+ + .
T Consensus 80 ~g~~qvV~LGaGlDTr~~Rl~~-~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 80 AGIRQVVILGAGLDTRAYRLPW-PDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA 158 (260)
T ss_pred cCCcEEEEeCCccccHHHhcCC-CCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence 3456799999999777766532 23678888888875544332 467888888885311 1 2
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceee-EeecC-CcccCHHH
Q 030291 74 SDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFM-NFNVG-GKERTEQE 151 (180)
Q Consensus 74 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~ 151 (180)
.-++++-+++.|++.....++++.+.+...| |+ .++.+...+........ .......... ..... ....+.++
T Consensus 159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~---gs-~l~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (260)
T TIGR00027 159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAP---GS-RLAFDYVRPLDGEWRAG-MRAPVYHAARGVDGSGLVFGIDRAD 233 (260)
T ss_pred CeeeeecchhhcCCHHHHHHHHHHHHHhCCC---Cc-EEEEEeccccchhHHHH-HHHHHHHhhhcccccccccCCChhh
Confidence 4578889999999999999999999998888 44 45555544311110000 0000000000 00011 12357899
Q ss_pred HHHHHHHcCCeEEEE
Q 030291 152 WGSLFVNAGFTHYKI 166 (180)
Q Consensus 152 ~~~~l~~aGf~~~~~ 166 (180)
+.+.|++.||+..+.
T Consensus 234 ~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 234 VAEWLAERGWRASEH 248 (260)
T ss_pred HHHHHHHCCCeeecC
Confidence 999999999998765
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.82 E-value=1.5e-05 Score=52.80 Aligned_cols=69 Identities=14% Similarity=0.209 Sum_probs=50.8
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeC-chhhccCCC-----CCCeeEEecCCcccC---CCccEEEeccccc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDL-PHAVTDMPQ-----TDNLKYIEGDMFQFI---PPSDAFFFKTVFH 84 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~-----~~~~~~~~~d~~~~~---~~~D~v~~~~~l~ 84 (180)
.+.+++|+|||.|.++.. ...+....+.|+|+ ++.++-+.+ .-++.++++|+.+.. +.||.++.+--+.
T Consensus 48 Egkkl~DLgcgcGmLs~a-~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIA-FSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPFG 125 (185)
T ss_pred cCcchhhhcCchhhhHHH-hhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCCC
Confidence 467899999999999833 33344567899999 558888875 456788999987633 3599988865543
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.81 E-value=1.7e-05 Score=61.49 Aligned_cols=51 Identities=16% Similarity=0.309 Sum_probs=42.0
Q ss_pred CeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcc
Q 030291 17 RSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ 69 (180)
Q Consensus 17 ~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~ 69 (180)
.++||++||+|.++..+++.. .+++++|.++ +++.+++ ..++++.++|+.+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 579999999999999888875 3799999965 8877764 3478899999854
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=97.81 E-value=1.7e-05 Score=57.43 Aligned_cols=99 Identities=16% Similarity=0.141 Sum_probs=67.1
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCcccCC--CccEEEeccccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQFIP--PSDAFFFKTVFH 84 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~~~~--~~D~v~~~~~l~ 84 (180)
++.+.+|+|||||.--++..+....++.+|++.|+.. +++.... ..+.++...|.....+ ..|+.+..-+++
T Consensus 103 ~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp 182 (251)
T PF07091_consen 103 IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLP 182 (251)
T ss_dssp S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HH
T ss_pred CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHH
Confidence 5679999999999999999888888889999999954 6655543 5678888889876433 599999988888
Q ss_pred cCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 85 FFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 85 ~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
.+..+.. ..--++.+.++. -.++++-+
T Consensus 183 ~le~q~~-g~g~~ll~~~~~----~~~vVSfP 209 (251)
T PF07091_consen 183 CLERQRR-GAGLELLDALRS----PHVVVSFP 209 (251)
T ss_dssp HHHHHST-THHHHHHHHSCE----SEEEEEEE
T ss_pred HHHHHhc-chHHHHHHHhCC----CeEEEecc
Confidence 7766553 333455666664 45555443
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.79 E-value=1.1e-05 Score=54.33 Aligned_cols=96 Identities=17% Similarity=0.241 Sum_probs=64.8
Q ss_pred CCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCC---------CCCeeEEecCCcc-----cCCCccEEEe
Q 030291 16 LRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQ---------TDNLKYIEGDMFQ-----FIPPSDAFFF 79 (180)
Q Consensus 16 ~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~---------~~~~~~~~~d~~~-----~~~~~D~v~~ 79 (180)
+.+|||+|+|- |..+..++...|..++...|..+ .+...++ ..++..+.-+... ....||.|++
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 47899999986 66666777778888999999854 5555443 1222222222211 1226999999
Q ss_pred ccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 80 KTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 80 ~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
..++.. ++....+++.+...|+| .|.-+++.+
T Consensus 110 ADClFf--dE~h~sLvdtIk~lL~p---~g~Al~fsP 141 (201)
T KOG3201|consen 110 ADCLFF--DEHHESLVDTIKSLLRP---SGRALLFSP 141 (201)
T ss_pred ccchhH--HHHHHHHHHHHHHHhCc---ccceeEecC
Confidence 988743 44445889999999999 788766543
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00012 Score=51.13 Aligned_cols=99 Identities=17% Similarity=0.248 Sum_probs=65.2
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCC-----CCCCeeEEecCCcccCCCccEEEeccccccCCh
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMP-----QTDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDD 88 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~-----~~~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~ 88 (180)
.+++|||+|+|+|..+..-+... -..++..|+.. .....+ ...++.+...|...+.+.+|+++...+++.-+.
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlfy~~~~ 157 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLFYNHTE 157 (218)
T ss_pred ccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeeceecCchH
Confidence 46899999999999988777764 33566677643 332222 145678888888776667999999998875444
Q ss_pred HHHHHHHHHHHHhhccCCCCcEEEEEEeeeC
Q 030291 89 EDCLKLLKKCREAIASNGERGKVLIIDIVID 119 (180)
Q Consensus 89 ~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~ 119 (180)
.. .++. +...+... |-.+++.++..+
T Consensus 158 a~--~l~~-~~~~l~~~--g~~vlvgdp~R~ 183 (218)
T COG3897 158 AD--RLIP-WKDRLAEA--GAAVLVGDPGRA 183 (218)
T ss_pred HH--HHHH-HHHHHHhC--CCEEEEeCCCCC
Confidence 44 5577 55555551 455555555443
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.75 E-value=5.2e-05 Score=52.99 Aligned_cols=98 Identities=14% Similarity=0.139 Sum_probs=62.4
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCe---------EEEeeCch-hhccCCC-------CCCeeEEecCC
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIK---------CTVLDLPH-AVTDMPQ-------TDNLKYIEGDM 67 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~---------~~~~D~~~-~~~~a~~-------~~~~~~~~~d~ 67 (180)
|+.... .+++..++|--||+|.+....+....+.. +++.|++. ++..+++ ...+.+.+.|+
T Consensus 20 ll~la~--~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~ 97 (179)
T PF01170_consen 20 LLNLAG--WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDA 97 (179)
T ss_dssp HHHHTT----TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--G
T ss_pred HHHHhC--CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecch
Confidence 344444 56788999999999999887766655555 89999955 7777764 45688999999
Q ss_pred cc-cC--CCccEEEecccccc-CCh-----HHHHHHHHHHHHhhcc
Q 030291 68 FQ-FI--PPSDAFFFKTVFHF-FDD-----EDCLKLLKKCREAIAS 104 (180)
Q Consensus 68 ~~-~~--~~~D~v~~~~~l~~-~~~-----~~~~~~l~~~~~~L~p 104 (180)
.+ +. ..+|.|+++--... +.. .-..++++++.+++++
T Consensus 98 ~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 98 RELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp GGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred hhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 65 31 35999998543221 121 1234667888888886
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=4.5e-05 Score=58.83 Aligned_cols=100 Identities=16% Similarity=0.159 Sum_probs=76.1
Q ss_pred cccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcc-cC--CCccEEEec
Q 030291 12 IFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQ-FI--PPSDAFFFK 80 (180)
Q Consensus 12 ~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~-~~--~~~D~v~~~ 80 (180)
.+.+++.++|+|||-|.....+.... .+.++++|.+. .+.++.. .....+...|+.. +. ..+|.+.+.
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f~-~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~l 185 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAVFK-KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFL 185 (364)
T ss_pred cCcccccccccCcCcCchhHHHHHhc-cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEE
Confidence 45667789999999999988776654 67799999854 4444432 3444457777755 23 369999999
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
.+..|.++.. .+++++.++++| ||.+...+..
T Consensus 186 d~~~~~~~~~--~~y~Ei~rv~kp---GG~~i~~e~i 217 (364)
T KOG1269|consen 186 EVVCHAPDLE--KVYAEIYRVLKP---GGLFIVKEWI 217 (364)
T ss_pred eecccCCcHH--HHHHHHhcccCC---CceEEeHHHH
Confidence 9999999999 779999999999 7777776654
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00012 Score=54.76 Aligned_cols=97 Identities=22% Similarity=0.335 Sum_probs=67.5
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCC-eEEEeeCch-hhccCCC--------CCCeeEEecCCccc------CCCccEEE
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGI-KCTVLDLPH-AVTDMPQ--------TDNLKYIEGDMFQF------IPPSDAFF 78 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~-~~~~~D~~~-~~~~a~~--------~~~~~~~~~d~~~~------~~~~D~v~ 78 (180)
.+++|||+=|=||.++...+.. ++ +++.+|.|. +++.+++ ..++++++.|+++. ...||+|+
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g--GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~II 200 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG--GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLII 200 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT--TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence 5789999999999999987665 44 799999987 8998875 36889999999762 23699999
Q ss_pred ec---cccccCC-hHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 79 FK---TVFHFFD-DEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 79 ~~---~~l~~~~-~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
+- +.=..+. ......++.++.+.|+| ||.++.+..
T Consensus 201 lDPPsF~k~~~~~~~~y~~L~~~a~~ll~~---gG~l~~~sc 239 (286)
T PF10672_consen 201 LDPPSFAKSKFDLERDYKKLLRRAMKLLKP---GGLLLTCSC 239 (286)
T ss_dssp E--SSEESSTCEHHHHHHHHHHHHHHTEEE---EEEEEEEE-
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHhcCC---CCEEEEEcC
Confidence 71 1101111 23345789999999999 777666543
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00055 Score=54.80 Aligned_cols=103 Identities=13% Similarity=0.114 Sum_probs=72.2
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCC-CCeEEEeeCch-hhccCCC------CCCeeEEecCCcc---cCC-CccEEEe-
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFP-GIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ---FIP-PSDAFFF- 79 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~---~~~-~~D~v~~- 79 (180)
..++.+|||+++|.|.-+..+++... ...+++.|++. .+...++ ..++.+.+.|... ..+ .||.|++
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 46788999999999999999988753 35799999954 4444432 3567777777643 222 5999994
Q ss_pred ---c--cccccCCh--------------HHHHHHHHHHHHhhccCCCCcEEEEEEeee
Q 030291 80 ---K--TVFHFFDD--------------EDCLKLLKKCREAIASNGERGKVLIIDIVI 118 (180)
Q Consensus 80 ---~--~~l~~~~~--------------~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~ 118 (180)
+ +++..-++ ..+.++|....++||| ||.++-+.+..
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~Lkp---GG~LVYSTCT~ 245 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKP---GGTLVYSTCTL 245 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCC---CcEEEEECCCC
Confidence 3 23433222 1236889999999999 88887776653
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00051 Score=49.46 Aligned_cols=140 Identities=10% Similarity=0.078 Sum_probs=83.4
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhc-cCCCCCCeeEE-ecCCcc-----cCCCccEEEeccccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVT-DMPQTDNLKYI-EGDMFQ-----FIPPSDAFFFKTVFH 84 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~-~a~~~~~~~~~-~~d~~~-----~~~~~D~v~~~~~l~ 84 (180)
..++..+||||+.||.++..+++.. -..++++|... .+. ..++.+|+..+ ..|+.. .....|++++--.+-
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d~~v~DvSFI 155 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPDLIVIDVSFI 155 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCCeEEEEeehh
Confidence 3567889999999999999999995 33689999844 343 34445555433 233321 122578888754432
Q ss_pred cCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEee-cCCcccCHHHHHHHHHHcCCeE
Q 030291 85 FFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFN-VGGKERTEQEWGSLFVNAGFTH 163 (180)
Q Consensus 85 ~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~aGf~~ 163 (180)
... .+|..+...+++ ++-++..--...+.. .......+... ...+..-...+.+.+.+.||++
T Consensus 156 ---SL~--~iLp~l~~l~~~---~~~~v~LvKPQFEag--------r~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~ 219 (245)
T COG1189 156 ---SLK--LILPALLLLLKD---GGDLVLLVKPQFEAG--------REQVGKKGVVRDPKLHAEVLSKIENFAKELGFQV 219 (245)
T ss_pred ---hHH--HHHHHHHHhcCC---CceEEEEecchhhhh--------hhhcCcCceecCcchHHHHHHHHHHHHhhcCcEE
Confidence 222 779999999999 666555321110100 01111111111 1123334577888899999999
Q ss_pred EEEeec
Q 030291 164 YKIAPI 169 (180)
Q Consensus 164 ~~~~~~ 169 (180)
..+...
T Consensus 220 ~gl~~S 225 (245)
T COG1189 220 KGLIKS 225 (245)
T ss_pred eeeEcc
Confidence 887644
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0028 Score=45.18 Aligned_cols=88 Identities=9% Similarity=0.164 Sum_probs=68.5
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccCC---CccEEEecc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFIP---PSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~~---~~D~v~~~~ 81 (180)
.+...++.||||-.+.+...+.+..+...++..|+.+ .++.|.+ ..+++...+|-+..+. .+|+++..+
T Consensus 14 V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAG 93 (226)
T COG2384 14 VKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAG 93 (226)
T ss_pred HHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeC
Confidence 3456669999999999999999999888999999844 5555543 6788999998866432 599988876
Q ss_pred ccccCChHHHHHHHHHHHHhhcc
Q 030291 82 VFHFFDDEDCLKLLKKCREAIAS 104 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p 104 (180)
+ .......+|++-.+-|+.
T Consensus 94 M----GG~lI~~ILee~~~~l~~ 112 (226)
T COG2384 94 M----GGTLIREILEEGKEKLKG 112 (226)
T ss_pred C----cHHHHHHHHHHhhhhhcC
Confidence 6 345566788888888874
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00083 Score=48.02 Aligned_cols=133 Identities=13% Similarity=0.084 Sum_probs=84.2
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCch-----hhccCCCCCCeeEEecCCcccC------CCccEEEec
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPH-----AVTDMPQTDNLKYIEGDMFQFI------PPSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~-----~~~~a~~~~~~~~~~~d~~~~~------~~~D~v~~~ 80 (180)
++++.+||-+|+++|.....+..-. +.-.+++++.+. .+..|++..|+-.+..|+..+. +..|+|++-
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~D 150 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQD 150 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEec
Confidence 7889999999999999999888873 466899999843 3455556899999999996532 369998873
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcC
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAG 160 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 160 (180)
-. ...+.+-++.++...||+ ||.++++--... .|... . ..--..+-.+.|++.|
T Consensus 151 Va----Qp~Qa~I~~~Na~~fLk~---gG~~~i~iKa~s--------------iD~t~---~--p~~vf~~e~~~L~~~~ 204 (229)
T PF01269_consen 151 VA----QPDQARIAALNARHFLKP---GGHLIISIKARS--------------IDSTA---D--PEEVFAEEVKKLKEEG 204 (229)
T ss_dssp -S----STTHHHHHHHHHHHHEEE---EEEEEEEEEHHH--------------H-SSS---S--HHHHHHHHHHHHHCTT
T ss_pred CC----ChHHHHHHHHHHHhhccC---CcEEEEEEecCc--------------ccCcC---C--HHHHHHHHHHHHHHcC
Confidence 33 123333567888899999 888888642211 11000 0 0000122345677889
Q ss_pred CeEEEEeecCC
Q 030291 161 FTHYKIAPIFG 171 (180)
Q Consensus 161 f~~~~~~~~~~ 171 (180)
|++.+...+.+
T Consensus 205 ~~~~e~i~LeP 215 (229)
T PF01269_consen 205 FKPLEQITLEP 215 (229)
T ss_dssp CEEEEEEE-TT
T ss_pred CChheEeccCC
Confidence 99999888754
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=97.54 E-value=4.8e-05 Score=52.03 Aligned_cols=62 Identities=21% Similarity=0.425 Sum_probs=45.1
Q ss_pred CeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccCC-----C-ccEEEec
Q 030291 17 RSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFIP-----P-SDAFFFK 80 (180)
Q Consensus 17 ~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~~-----~-~D~v~~~ 80 (180)
..|+|+.||.|..+..+++.+ .+++++|+.. .++.++. ..+++++++|+.+..+ . +|+|+++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred CEEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 369999999999999999995 4599999954 6777663 5689999999976321 2 7999963
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0012 Score=44.25 Aligned_cols=95 Identities=18% Similarity=0.306 Sum_probs=62.4
Q ss_pred EEEeCCcccHHHHHHHHHCCC-CeEEEeeCch-hhccCCCC---CC---eeEEecCCcc---cCC---CccEEEeccccc
Q 030291 19 MVDVGGGTGAFARIISEAFPG-IKCTVLDLPH-AVTDMPQT---DN---LKYIEGDMFQ---FIP---PSDAFFFKTVFH 84 (180)
Q Consensus 19 iLdiG~G~G~~~~~l~~~~~~-~~~~~~D~~~-~~~~a~~~---~~---~~~~~~d~~~---~~~---~~D~v~~~~~l~ 84 (180)
++|+|||+|... .+....+. ..++++|.+. ++...+.. .. +.+...+... +.. .+|++.+....+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 999999999977 34444322 4788899965 55553321 11 4677776543 222 599994444444
Q ss_pred cCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCC
Q 030291 85 FFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDE 120 (180)
Q Consensus 85 ~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~ 120 (180)
+.. .. ..+.++.+.++| +|.+++.......
T Consensus 131 ~~~-~~--~~~~~~~~~l~~---~g~~~~~~~~~~~ 160 (257)
T COG0500 131 LLP-PA--KALRELLRVLKP---GGRLVLSDLLRDG 160 (257)
T ss_pred cCC-HH--HHHHHHHHhcCC---CcEEEEEeccCCC
Confidence 444 33 779999999999 8888887765443
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.49 E-value=9.2e-05 Score=47.01 Aligned_cols=90 Identities=23% Similarity=0.375 Sum_probs=37.5
Q ss_pred EEeCCcccHHHHHHHHHCCC---CeEEEeeC-c---hhhccCCC---CCCeeEEecCCccc-----CCCccEEEeccccc
Q 030291 20 VDVGGGTGAFARIISEAFPG---IKCTVLDL-P---HAVTDMPQ---TDNLKYIEGDMFQF-----IPPSDAFFFKTVFH 84 (180)
Q Consensus 20 LdiG~G~G~~~~~l~~~~~~---~~~~~~D~-~---~~~~~a~~---~~~~~~~~~d~~~~-----~~~~D~v~~~~~l~ 84 (180)
||||+..|..+..+++..+. .+++++|. + ...+..++ ..+++++.++..+. ...+|+++.-+. |
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~-H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD-H 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC-C
Confidence 69999999998888876533 26899998 4 23333332 56899999998542 247999988553 2
Q ss_pred cCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 85 FFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 85 ~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
..+. ....++.+.+.|+| ||.+++.|
T Consensus 80 ~~~~--~~~dl~~~~~~l~~---ggviv~dD 105 (106)
T PF13578_consen 80 SYEA--VLRDLENALPRLAP---GGVIVFDD 105 (106)
T ss_dssp -HHH--HHHHHHHHGGGEEE---EEEEEEE-
T ss_pred CHHH--HHHHHHHHHHHcCC---CeEEEEeC
Confidence 2222 23668899999999 77666654
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00022 Score=50.03 Aligned_cols=98 Identities=16% Similarity=0.307 Sum_probs=67.3
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCc-hhhccCCC-------------CCCeeEEecCCcccCCC-ccEEEe
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLP-HAVTDMPQ-------------TDNLKYIEGDMFQFIPP-SDAFFF 79 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~-~~~~~a~~-------------~~~~~~~~~d~~~~~~~-~D~v~~ 79 (180)
....+.|||||-|.+...|...+|.-.+.|.++. ++-+..+. ..|+.+...+.....|+ |..-..
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 4467899999999999999999999999999982 23333321 35666666666555553 444444
Q ss_pred ccccccCChHH-----------HHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 80 KTVFHFFDDED-----------CLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 80 ~~~l~~~~~~~-----------~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
+-+++.++|+. ...++.+..=+|++ ||.++...
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~---gg~~ytit 183 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLRE---GGILYTIT 183 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhc---CceEEEEe
Confidence 44555555542 23678888899999 77777654
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00031 Score=46.97 Aligned_cols=54 Identities=11% Similarity=0.083 Sum_probs=41.9
Q ss_pred eEEEeCCcccHHHHHHHHHCCCCeEEEeeCc-hhhccCCC------CCCeeEEecCCcccC
Q 030291 18 SMVDVGGGTGAFARIISEAFPGIKCTVLDLP-HAVTDMPQ------TDNLKYIEGDMFQFI 71 (180)
Q Consensus 18 ~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~-~~~~~a~~------~~~~~~~~~d~~~~~ 71 (180)
+++|||||.|..+..+++.++..+++++|+. .+.+.+++ ..++++.+..+.+..
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~~~ 61 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGDRD 61 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeCCC
Confidence 4899999999999999999888899999994 47666654 245777777664433
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00038 Score=46.70 Aligned_cols=70 Identities=21% Similarity=0.372 Sum_probs=48.3
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHH----CCCCeEEEeeCch-hhccCCC---------CCCeeEEecCCccc--CCCccE
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEA----FPGIKCTVLDLPH-AVTDMPQ---------TDNLKYIEGDMFQF--IPPSDA 76 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~----~~~~~~~~~D~~~-~~~~a~~---------~~~~~~~~~d~~~~--~~~~D~ 76 (180)
..+..+|+|+|||.|.++..++.. .++.+++++|..+ ..+.+.+ ..+.++...+..+. ....++
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI 102 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence 356889999999999999999882 2688999999844 5555543 24555555555332 335777
Q ss_pred EEeccc
Q 030291 77 FFFKTV 82 (180)
Q Consensus 77 v~~~~~ 82 (180)
++..++
T Consensus 103 ~vgLHa 108 (141)
T PF13679_consen 103 LVGLHA 108 (141)
T ss_pred EEEeec
Confidence 776444
|
|
| >KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0014 Score=48.95 Aligned_cols=153 Identities=12% Similarity=0.147 Sum_probs=100.4
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHC--CCCeEEEeeCch-hhccCC---C------------------------CCCeeE
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAF--PGIKCTVLDLPH-AVTDMP---Q------------------------TDNLKY 62 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~--~~~~~~~~D~~~-~~~~a~---~------------------------~~~~~~ 62 (180)
......|+.+|||.-.+.-.|...+ +.+.++-+|.|+ ...++. + .++...
T Consensus 85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~ 164 (335)
T KOG2918|consen 85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHL 164 (335)
T ss_pred cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceee
Confidence 3567889999999999999998886 677888888876 333331 0 233334
Q ss_pred EecCCcc--c----C-------CCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhh
Q 030291 63 IEGDMFQ--F----I-------PPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTE 129 (180)
Q Consensus 63 ~~~d~~~--~----~-------~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~ 129 (180)
.-.|..+ . + .-+-++++-.++-|++++....+++.+.+.... +.++..+...+..+....+..
T Consensus 165 ~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~----a~fv~YEQi~~~D~Fg~vM~~ 240 (335)
T KOG2918|consen 165 IGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFEN----AHFVNYEQINPNDRFGKVMLA 240 (335)
T ss_pred eccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCc----ccEEEEeccCCCChHHHHHHH
Confidence 4444432 0 0 014456777888899998888889999988875 899999988866655432222
Q ss_pred hhhccceeeEeecCCcccCHHHHHHHHHHcCCeEEEEeecCC
Q 030291 130 SKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFG 171 (180)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~ 171 (180)
.-.......... ...-+.+..++-+.++||+-+.+.+...
T Consensus 241 nlk~r~~~L~gl--e~y~s~Esq~~Rf~~~Gw~~v~a~Dm~e 280 (335)
T KOG2918|consen 241 NLKRRGCPLHGL--ETYNSIESQRSRFLKAGWEYVIAVDMNE 280 (335)
T ss_pred HHHhcCCCCchh--hhcccHHHHHHHHHhcCCceeehhhHHH
Confidence 111111111000 1345788899999999999888776543
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0012 Score=49.01 Aligned_cols=96 Identities=16% Similarity=0.303 Sum_probs=54.4
Q ss_pred CCCeEEEeCCcccHHHHH-HHHH-CCCCeEEEeeCch-hhccCCC--------CCCeeEEecCCcc---cCCCccEEEec
Q 030291 15 GLRSMVDVGGGTGAFARI-ISEA-FPGIKCTVLDLPH-AVTDMPQ--------TDNLKYIEGDMFQ---FIPPSDAFFFK 80 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~-l~~~-~~~~~~~~~D~~~-~~~~a~~--------~~~~~~~~~d~~~---~~~~~D~v~~~ 80 (180)
.+++|+=||||.=-+|.. +++. .++..++++|..+ +.+.+++ ..++++.++|..+ ....||+|+..
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 356999999998655554 4443 4678899999944 6666643 6789999999865 24579999987
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
....- ....+.+++..+.+.++| |..+++-
T Consensus 200 alVg~-~~e~K~~Il~~l~~~m~~---ga~l~~R 229 (276)
T PF03059_consen 200 ALVGM-DAEPKEEILEHLAKHMAP---GARLVVR 229 (276)
T ss_dssp TT-S-----SHHHHHHHHHHHS-T---TSEEEEE
T ss_pred hhccc-ccchHHHHHHHHHhhCCC---CcEEEEe
Confidence 76542 222345899999999999 6666553
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00027 Score=53.64 Aligned_cols=101 Identities=17% Similarity=0.178 Sum_probs=62.7
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHH-------CCCCeEEEeeCch-hhccCC------C--CCCeeEEecCCccc-----C
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEA-------FPGIKCTVLDLPH-AVTDMP------Q--TDNLKYIEGDMFQF-----I 71 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~-------~~~~~~~~~D~~~-~~~~a~------~--~~~~~~~~~d~~~~-----~ 71 (180)
..++.+|+|.+||+|.+...+.+. .+...++|+|+.+ +...++ . ..+..+..+|.+.. .
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 456778999999999998887663 3678899999944 444332 1 33345778887652 2
Q ss_pred CCccEEEecc--ccc-c----C-----------C-hHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 72 PPSDAFFFKT--VFH-F----F-----------D-DEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 72 ~~~D~v~~~~--~l~-~----~-----------~-~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
..||+|+++= ... + . + ...-..++..+.+.|++ +|++.+.-+
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~---~G~~~~Ilp 184 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKP---GGRAAIILP 184 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhccc---ccceeEEec
Confidence 3699999842 211 0 0 0 01112588999999999 888766554
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0012 Score=46.23 Aligned_cols=98 Identities=17% Similarity=0.221 Sum_probs=63.8
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCccc-------CCCccEEEe
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQF-------IPPSDAFFF 79 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~-------~~~~D~v~~ 79 (180)
.+.++||+=||+|.++...+.+. -.+++.+|.+. .....++ ..+++.+..|.... ...||+|++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 57899999999999999988885 34799999854 5555543 34688888887441 236999998
Q ss_pred ccccccCChHHHHHHHHHHH--HhhccCCCCcEEEEEEeeeC
Q 030291 80 KTVFHFFDDEDCLKLLKKCR--EAIASNGERGKVLIIDIVID 119 (180)
Q Consensus 80 ~~~l~~~~~~~~~~~l~~~~--~~L~p~~~~G~~~~~~~~~~ 119 (180)
-=-. ..... ..+++..+. .+|++ +.+++.+....
T Consensus 121 DPPY-~~~~~-~~~~l~~l~~~~~l~~----~~~ii~E~~~~ 156 (183)
T PF03602_consen 121 DPPY-AKGLY-YEELLELLAENNLLNE----DGLIIIEHSKK 156 (183)
T ss_dssp --ST-TSCHH-HHHHHHHHHHTTSEEE----EEEEEEEEETT
T ss_pred CCCc-ccchH-HHHHHHHHHHCCCCCC----CEEEEEEecCC
Confidence 3221 11221 236677777 78998 66677676544
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0001 Score=55.89 Aligned_cols=103 Identities=15% Similarity=0.252 Sum_probs=65.0
Q ss_pred CCeEEEeCCcccHHHHHHHHHCCCC-eEEEeeCchhhccCCC-------CCCeeEEecCCcc---cCC---CccEEEecc
Q 030291 16 LRSMVDVGGGTGAFARIISEAFPGI-KCTVLDLPHAVTDMPQ-------TDNLKYIEGDMFQ---FIP---PSDAFFFKT 81 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~~~~~-~~~~~D~~~~~~~a~~-------~~~~~~~~~d~~~---~~~---~~D~v~~~~ 81 (180)
+++|||+|.|.|.-..++-..+|.. +++.++.+..+...-. .........|+.. ++| .|++++...
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~ 193 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLD 193 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhhh
Confidence 5679999999998887777777653 3455555443333221 2233344444432 344 377777655
Q ss_pred ccccCCh-HHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCC
Q 030291 82 VFHFFDD-EDCLKLLKKCREAIASNGERGKVLIIDIVIDEK 121 (180)
Q Consensus 82 ~l~~~~~-~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~ 121 (180)
-|-+... ......++++.+.+.| ||.+++++...+.+
T Consensus 194 eLl~d~~ek~i~~~ie~lw~l~~~---gg~lVivErGtp~G 231 (484)
T COG5459 194 ELLPDGNEKPIQVNIERLWNLLAP---GGHLVIVERGTPAG 231 (484)
T ss_pred hhccccCcchHHHHHHHHHHhccC---CCeEEEEeCCCchh
Confidence 4444433 3344589999999999 99999998754443
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00072 Score=55.11 Aligned_cols=66 Identities=9% Similarity=0.122 Sum_probs=44.1
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCC--------CCeEEEeeCch-hhccCCC----C--CCeeEEecCCcc--------cC
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFP--------GIKCTVLDLPH-AVTDMPQ----T--DNLKYIEGDMFQ--------FI 71 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~--------~~~~~~~D~~~-~~~~a~~----~--~~~~~~~~d~~~--------~~ 71 (180)
...+|||.+||+|.+...++...+ ...++++|+.+ .+..++. . ..+...+.|... ..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 456899999999999988876643 24679999955 6655542 1 234445555432 12
Q ss_pred CCccEEEec
Q 030291 72 PPSDAFFFK 80 (180)
Q Consensus 72 ~~~D~v~~~ 80 (180)
+.||+|+.+
T Consensus 111 ~~fD~IIgN 119 (524)
T TIGR02987 111 DLFDIVITN 119 (524)
T ss_pred CcccEEEeC
Confidence 369999985
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0019 Score=50.28 Aligned_cols=92 Identities=16% Similarity=0.195 Sum_probs=68.8
Q ss_pred CeEEEeCCcccHHHHHHHHHCCC-CeEEEeeCch-hhccCCC------CCCeeEEecCCcccC----CCccEEEeccccc
Q 030291 17 RSMVDVGGGTGAFARIISEAFPG-IKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQFI----PPSDAFFFKTVFH 84 (180)
Q Consensus 17 ~~iLdiG~G~G~~~~~l~~~~~~-~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~~----~~~D~v~~~~~l~ 84 (180)
-+|||+-||+|..+..++...++ .+++++|.+. .++.+++ ..++++.+.|....+ ..||+|..-- +
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f- 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F- 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C-
Confidence 48999999999999999988533 5799999954 6666654 235788888885422 3599998733 2
Q ss_pred cCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 85 FFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 85 ~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
..+. .++..+.+.+++ +|.+.++.+.
T Consensus 124 --Gs~~--~fld~al~~~~~---~glL~vTaTD 149 (374)
T TIGR00308 124 --GTPA--PFVDSAIQASAE---RGLLLVTATD 149 (374)
T ss_pred --CCcH--HHHHHHHHhccc---CCEEEEEecc
Confidence 2333 679999999998 8899998543
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0024 Score=53.94 Aligned_cols=100 Identities=10% Similarity=0.111 Sum_probs=65.0
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHC----C--------------------------------------CCeEEEeeCch-h
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAF----P--------------------------------------GIKCTVLDLPH-A 50 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~----~--------------------------------------~~~~~~~D~~~-~ 50 (180)
+++..++|..||+|.+....+... | ..+++++|+++ +
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 457889999999999887654420 1 23689999955 8
Q ss_pred hccCCC-------CCCeeEEecCCccc-C----CCccEEEeccccc-cCC-hHHHHHHHHHHHHhhc---cCCCCcEEEE
Q 030291 51 VTDMPQ-------TDNLKYIEGDMFQF-I----PPSDAFFFKTVFH-FFD-DEDCLKLLKKCREAIA---SNGERGKVLI 113 (180)
Q Consensus 51 ~~~a~~-------~~~~~~~~~d~~~~-~----~~~D~v~~~~~l~-~~~-~~~~~~~l~~~~~~L~---p~~~~G~~~~ 113 (180)
+..|+. ...+++.++|+.+. . ..+|+|+++=-.. .+. ......+.+.+.+.++ + |+.+++
T Consensus 269 v~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~---g~~~~l 345 (702)
T PRK11783 269 IQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFG---GWNAAL 345 (702)
T ss_pred HHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCC---CCeEEE
Confidence 888774 35688999998652 1 2499999973321 122 2333355555555555 6 777766
Q ss_pred EEe
Q 030291 114 IDI 116 (180)
Q Consensus 114 ~~~ 116 (180)
...
T Consensus 346 lt~ 348 (702)
T PRK11783 346 FSS 348 (702)
T ss_pred EeC
Confidence 543
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0095 Score=41.57 Aligned_cols=102 Identities=18% Similarity=0.287 Sum_probs=61.0
Q ss_pred ccccccccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCchhhccCCCCCCeeEEec-CCccc---------CC--C
Q 030291 7 KDCRPIFQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPHAVTDMPQTDNLKYIEG-DMFQF---------IP--P 73 (180)
Q Consensus 7 ~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~a~~~~~~~~~~~-d~~~~---------~~--~ 73 (180)
++|. .+++.++|||+||.+|.++.-..+.. |+..+.++|+-.. .-....+++++ |+.++ +| .
T Consensus 62 dKy~-~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~----~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~ 136 (232)
T KOG4589|consen 62 DKYR-FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI----EPPEGATIIQGNDVTDPETYRKIFEALPNRP 136 (232)
T ss_pred hhcc-ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec----cCCCCcccccccccCCHHHHHHHHHhCCCCc
Confidence 3444 46889999999999999999887774 8889999997331 11233444444 55442 34 4
Q ss_pred ccEEEecccccc----CChHH-----HHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 74 SDAFFFKTVFHF----FDDED-----CLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 74 ~D~v~~~~~l~~----~~~~~-----~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
.|+|++-..-.. +.|.. +..++--....+.| +|.++.--+
T Consensus 137 VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p---~g~fvcK~w 185 (232)
T KOG4589|consen 137 VDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIP---NGSFVCKLW 185 (232)
T ss_pred ccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCC---CcEEEEEEe
Confidence 898887433211 11222 22233333456778 666665443
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0042 Score=45.42 Aligned_cols=96 Identities=16% Similarity=0.160 Sum_probs=63.6
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchh---hccCCC---------CCCeeEEecCCcc------cCCC-cc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHA---VTDMPQ---------TDNLKYIEGDMFQ------FIPP-SD 75 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~---~~~a~~---------~~~~~~~~~d~~~------~~~~-~D 75 (180)
....|||+|+|+|..+...+... ...+...|.+.. +....+ ...+.....+.-. ..+. +|
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~-~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL-GAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh-cceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 35679999999997777666654 667888887552 222221 1233333332211 1235 89
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 76 AFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 76 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
+|+++.++++-.... .++..++..|.. ++.+++...
T Consensus 165 lilasDvvy~~~~~e--~Lv~tla~ll~~---~~~i~l~~~ 200 (248)
T KOG2793|consen 165 LILASDVVYEEESFE--GLVKTLAFLLAK---DGTIFLAYP 200 (248)
T ss_pred EEEEeeeeecCCcch--hHHHHHHHHHhc---CCeEEEEEe
Confidence 999999998777666 778999999988 775555443
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0011 Score=50.09 Aligned_cols=78 Identities=13% Similarity=0.157 Sum_probs=60.5
Q ss_pred CcccccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCcc-----
Q 030291 1 MATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQ----- 69 (180)
Q Consensus 1 ~~~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~----- 69 (180)
|++++++.+. ..++..++|.=+|.|..+..+++..+..+++++|... ++..+++ ..+++++++++.+
T Consensus 8 ll~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l 85 (305)
T TIGR00006 8 LLDEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHL 85 (305)
T ss_pred hHHHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHH
Confidence 3456777776 6778899999999999999999987668999999944 7777754 3589999988854
Q ss_pred ---cCCCccEEEec
Q 030291 70 ---FIPPSDAFFFK 80 (180)
Q Consensus 70 ---~~~~~D~v~~~ 80 (180)
....+|.|++.
T Consensus 86 ~~~~~~~vDgIl~D 99 (305)
T TIGR00006 86 DELLVTKIDGILVD 99 (305)
T ss_pred HhcCCCcccEEEEe
Confidence 11358888874
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0023 Score=48.33 Aligned_cols=147 Identities=14% Similarity=0.147 Sum_probs=91.8
Q ss_pred CCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCC---------CCCeeEEecCCcc-cCC------C-----c
Q 030291 16 LRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ---------TDNLKYIEGDMFQ-FIP------P-----S 74 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~---------~~~~~~~~~d~~~-~~~------~-----~ 74 (180)
...|+-+|||.-.-..++-.- ++.+++-+|+|++++.-++ ....+++..|+.+ ..+ . .
T Consensus 93 ~~qvViLgaGLDTRayRl~~~-~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~p 171 (297)
T COG3315 93 IRQVVILGAGLDTRAYRLDWP-KGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRSRP 171 (297)
T ss_pred ccEEEEeccccccceeecCCC-CCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcCCC
Confidence 578999999885544443222 2678899999986655543 2378999999973 221 2 4
Q ss_pred cEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee-eCCCCCchhhhhhhhcccee-e-EeecCCcccCHHH
Q 030291 75 DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV-IDEKEDDRELTESKLLFDIF-M-NFNVGGKERTEQE 151 (180)
Q Consensus 75 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~ 151 (180)
-++++-+++.|++.+...++++.+...+.| |-.++.+.. .........-.......... . .........+..+
T Consensus 172 t~~iaEGLl~YL~~~~v~~ll~~I~~~~~~----gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e 247 (297)
T COG3315 172 TLWIAEGLLMYLPEEAVDRLLSRIAALSAP----GSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDDPAE 247 (297)
T ss_pred eEEEeccccccCCHHHHHHHHHHHHHhCCC----CceEEEeccccHHHHhcccchhhhhhccccccccccceeccCCHHH
Confidence 478899999999999999999999999998 555555542 11110000000000011000 0 0001112346899
Q ss_pred HHHHHHHcCCeEEEEe
Q 030291 152 WGSLFVNAGFTHYKIA 167 (180)
Q Consensus 152 ~~~~l~~aGf~~~~~~ 167 (180)
+...+.+.||......
T Consensus 248 ~~~~l~~~g~~~~~~~ 263 (297)
T COG3315 248 IETWLAERGWRSTLNR 263 (297)
T ss_pred HHHHHHhcCEEEEecC
Confidence 9999999999887663
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0041 Score=44.18 Aligned_cols=97 Identities=12% Similarity=0.167 Sum_probs=52.2
Q ss_pred CCCeEEEeCCcccHHHHHHH---HHC-CCCeEEEeeCc--hhhccCCC----CCCeeEEecCCccc--------C---CC
Q 030291 15 GLRSMVDVGGGTGAFARIIS---EAF-PGIKCTVLDLP--HAVTDMPQ----TDNLKYIEGDMFQF--------I---PP 73 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~---~~~-~~~~~~~~D~~--~~~~~a~~----~~~~~~~~~d~~~~--------~---~~ 73 (180)
.++.|+|+|.-.|.-+..++ +.. +..+++++|+. ..-..+.+ .++|+++.+|-.++ . +.
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 57899999988887666554 343 77899999982 22222223 48999999998652 1 12
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 74 SDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 74 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
..+|+. ..-|...+.. +.|+.....+++ |+++++-|+.
T Consensus 112 ~vlVil-Ds~H~~~hvl--~eL~~y~plv~~---G~Y~IVeDt~ 149 (206)
T PF04989_consen 112 PVLVIL-DSSHTHEHVL--AELEAYAPLVSP---GSYLIVEDTI 149 (206)
T ss_dssp SEEEEE-SS----SSHH--HHHHHHHHT--T---T-EEEETSHH
T ss_pred ceEEEE-CCCccHHHHH--HHHHHhCccCCC---CCEEEEEecc
Confidence 334443 3333334444 558889999999 8888887664
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0016 Score=46.26 Aligned_cols=99 Identities=18% Similarity=0.333 Sum_probs=69.5
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeC-chhhccCCC-----CCCeeEEecCCcc---cCC--CccEEEecc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDL-PHAVTDMPQ-----TDNLKYIEGDMFQ---FIP--PSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~-----~~~~~~~~~d~~~---~~~--~~D~v~~~~ 81 (180)
..++.+||+||-|-|.....+.+..|..++ .++. ++++.+.+. ..|+-.+.+-..+ .++ .||-|+.--
T Consensus 99 ~tkggrvLnVGFGMgIidT~iQe~~p~~H~-IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDT 177 (271)
T KOG1709|consen 99 STKGGRVLNVGFGMGIIDTFIQEAPPDEHW-IIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDT 177 (271)
T ss_pred hhCCceEEEeccchHHHHHHHhhcCCcceE-EEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeec
Confidence 467899999999999998888777665444 5555 667766664 5677666654433 333 599998754
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
.-.+.++.. .+..-+.+.||| +|.+-.+...
T Consensus 178 y~e~yEdl~--~~hqh~~rLLkP---~gv~SyfNg~ 208 (271)
T KOG1709|consen 178 YSELYEDLR--HFHQHVVRLLKP---EGVFSYFNGL 208 (271)
T ss_pred hhhHHHHHH--HHHHHHhhhcCC---CceEEEecCc
Confidence 434444444 788899999999 8877666543
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.00029 Score=54.48 Aligned_cols=49 Identities=27% Similarity=0.460 Sum_probs=36.8
Q ss_pred CeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCC
Q 030291 17 RSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDM 67 (180)
Q Consensus 17 ~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~ 67 (180)
.++||+=||.|.++..+++.. .+++|+|..+ +++.|+. ..|++|..++.
T Consensus 198 ~~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred CcEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 379999999999999998884 4699999955 8888874 56889988765
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.001 Score=52.77 Aligned_cols=65 Identities=23% Similarity=0.368 Sum_probs=51.8
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCccc---C---CCccEEEe
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQF---I---PPSDAFFF 79 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~---~---~~~D~v~~ 79 (180)
..+..+++|+=||.|.++..+++. ..+++++|+++ +++.|++ ..|++|..++..+. . ..+|.|+.
T Consensus 291 ~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vvv 368 (432)
T COG2265 291 LAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVV 368 (432)
T ss_pred hcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEE
Confidence 346679999999999999999977 56799999955 8888764 46689999988552 1 25899987
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.02 Score=44.72 Aligned_cols=150 Identities=15% Similarity=0.202 Sum_probs=82.6
Q ss_pred CCCeEEEeCCcccHHHHHHH--------HH-------CCCCeEEEeeCch-hhc-cCCC------------------CCC
Q 030291 15 GLRSMVDVGGGTGAFARIIS--------EA-------FPGIKCTVLDLPH-AVT-DMPQ------------------TDN 59 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~--------~~-------~~~~~~~~~D~~~-~~~-~a~~------------------~~~ 59 (180)
..-+|+|+|||+|.++..+. +. .|..++..-|+|. ... -.+. ..+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 36689999999998765443 22 1456778888753 111 0110 001
Q ss_pred -e--eEEecCCcc---cCCCccEEEeccccccCCh------------------------------------HHHHHHHHH
Q 030291 60 -L--KYIEGDMFQ---FIPPSDAFFFKTVFHFFDD------------------------------------EDCLKLLKK 97 (180)
Q Consensus 60 -~--~~~~~d~~~---~~~~~D~v~~~~~l~~~~~------------------------------------~~~~~~l~~ 97 (180)
+ ..+.+++.. +..+.++++++.++|++.. .++..+|+-
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~ 222 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRA 222 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 1 222355555 2235999999999998852 023445666
Q ss_pred HHHhhccCCCCcEEEEEEeeeCCCCCc-hh-hhhh------hhcccee--e--------EeecCCcccCHHHHHHHHHHc
Q 030291 98 CREAIASNGERGKVLIIDIVIDEKEDD-RE-LTES------KLLFDIF--M--------NFNVGGKERTEQEWGSLFVNA 159 (180)
Q Consensus 98 ~~~~L~p~~~~G~~~~~~~~~~~~~~~-~~-~~~~------~~~~~~~--~--------~~~~~~~~~~~~~~~~~l~~a 159 (180)
=++-|.| ||.+++.-...+..... .. .... ..+.++. + ....+....+.+|+++.+++.
T Consensus 223 Ra~ELvp---GG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~ 299 (386)
T PLN02668 223 RAQEMKR---GGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEAN 299 (386)
T ss_pred HHHHhcc---CcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhc
Confidence 6678999 99999876554321111 00 0000 0000100 0 001223456899999999988
Q ss_pred C-CeEEEEe
Q 030291 160 G-FTHYKIA 167 (180)
Q Consensus 160 G-f~~~~~~ 167 (180)
| |++.++.
T Consensus 300 gsF~I~~le 308 (386)
T PLN02668 300 GSFAIDKLE 308 (386)
T ss_pred CCEEeeeeE
Confidence 7 5555444
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0051 Score=47.10 Aligned_cols=96 Identities=19% Similarity=0.247 Sum_probs=73.6
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeC-chhhccCCC-------CCCeeEEecCCcccC---CCccEEEeccc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDL-PHAVTDMPQ-------TDNLKYIEGDMFQFI---PPSDAFFFKTV 82 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~-------~~~~~~~~~d~~~~~---~~~D~v~~~~~ 82 (180)
..+.+|+|.=+|-|.++..++... ..+++++|+ |......++ ...++.+++|..... +.+|-|+++..
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g-~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKG-RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcC-CceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 458899999999999999999885 233999999 446665553 455889999997633 45999999665
Q ss_pred cccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeC
Q 030291 83 FHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVID 119 (180)
Q Consensus 83 l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~ 119 (180)
- ... +++....+.+++ ||.+-..+....
T Consensus 266 ~----~a~--~fl~~A~~~~k~---~g~iHyy~~~~e 293 (341)
T COG2520 266 K----SAH--EFLPLALELLKD---GGIIHYYEFVPE 293 (341)
T ss_pred C----cch--hhHHHHHHHhhc---CcEEEEEeccch
Confidence 3 233 789999999999 788877775443
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.024 Score=38.60 Aligned_cols=100 Identities=13% Similarity=0.048 Sum_probs=62.0
Q ss_pred CCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCe-eEEecCCcc----cCCCccEEEeccccccCCh-
Q 030291 16 LRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNL-KYIEGDMFQ----FIPPSDAFFFKTVFHFFDD- 88 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~-~~~~~d~~~----~~~~~D~v~~~~~l~~~~~- 88 (180)
+.+.+=+|+..-+.-...++.. ..++..+|..+ .++.-- ..++ ++.+.|+.. ....||.+.+.++++|+.-
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~G-A~~iltveyn~L~i~~~~-~dr~ssi~p~df~~~~~~y~~~fD~~as~~siEh~GLG 79 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHG-AAKILTVEYNKLEIQEEF-RDRLSSILPVDFAKNWQKYAGSFDFAASFSSIEHFGLG 79 (177)
T ss_pred CceEEEEecCCchhhHHHHHcC-CceEEEEeecccccCccc-ccccccccHHHHHHHHHHhhccchhhheechhcccccc
Confidence 4567778887655554444443 45688888644 222111 1222 233344432 2346999999999988721
Q ss_pred --------HHHHHHHHHHHHhhccCCCCcEEEEEEeeeCC
Q 030291 89 --------EDCLKLLKKCREAIASNGERGKVLIIDIVIDE 120 (180)
Q Consensus 89 --------~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~ 120 (180)
..-...+.+++++||| ||.+++.-+...+
T Consensus 80 RYGDPidp~Gdl~~m~~i~~vLK~---GG~L~l~vPvG~d 116 (177)
T PF03269_consen 80 RYGDPIDPIGDLRAMAKIKCVLKP---GGLLFLGVPVGTD 116 (177)
T ss_pred ccCCCCCccccHHHHHHHHHhhcc---CCeEEEEeecCCc
Confidence 1223669999999999 9999998776543
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.039 Score=42.36 Aligned_cols=93 Identities=14% Similarity=0.169 Sum_probs=67.0
Q ss_pred ccCCCeEEEeCCc-ccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecC---CcccCC-CccEEEeccccccC
Q 030291 13 FQGLRSMVDVGGG-TGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGD---MFQFIP-PSDAFFFKTVFHFF 86 (180)
Q Consensus 13 ~~~~~~iLdiG~G-~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d---~~~~~~-~~D~v~~~~~l~~~ 86 (180)
.+++++|+=+|+| .|..+..+++.. +++++++|.++ -.+.+++...-.++... ..+... .+|+|+..-. .
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~-ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~-- 239 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAM-GAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P-- 239 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc-CCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h--
Confidence 6788899988877 356777788876 59999999966 78888775555555543 211222 3999887444 2
Q ss_pred ChHHHHHHHHHHHHhhccCCCCcEEEEEEeee
Q 030291 87 DDEDCLKLLKKCREAIASNGERGKVLIIDIVI 118 (180)
Q Consensus 87 ~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~ 118 (180)
..+....+.|++ +|.+++.....
T Consensus 240 ------~~~~~~l~~l~~---~G~~v~vG~~~ 262 (339)
T COG1064 240 ------ATLEPSLKALRR---GGTLVLVGLPG 262 (339)
T ss_pred ------hhHHHHHHHHhc---CCEEEEECCCC
Confidence 458888899999 99999988763
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0083 Score=47.64 Aligned_cols=100 Identities=17% Similarity=0.206 Sum_probs=72.5
Q ss_pred cCCC-eEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCC-----CCCCeeEEecCCcc---cCCCccEEEecccc
Q 030291 14 QGLR-SMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMP-----QTDNLKYIEGDMFQ---FIPPSDAFFFKTVF 83 (180)
Q Consensus 14 ~~~~-~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~-----~~~~~~~~~~d~~~---~~~~~D~v~~~~~l 83 (180)
.+.. +++.+|||...++..+.+.. ...++.+|.|+ .++... ...-.++...|+.. +.++||+|+..+.+
T Consensus 46 ~p~~~~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtl 124 (482)
T KOG2352|consen 46 SPSDFKILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTL 124 (482)
T ss_pred chhhceeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcc
Confidence 3444 89999999999888887774 33589999976 444332 24556777777754 34579999999988
Q ss_pred ccCChH--------HHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 84 HFFDDE--------DCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 84 ~~~~~~--------~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
+++... .....+.++.+++++ ||+.+.....
T Consensus 125 Dal~~de~a~~~~~~v~~~~~eVsrvl~~---~gk~~svtl~ 163 (482)
T KOG2352|consen 125 DALFEDEDALLNTAHVSNMLDEVSRVLAP---GGKYISVTLV 163 (482)
T ss_pred ccccCCchhhhhhHHhhHHHhhHHHHhcc---CCEEEEEEee
Confidence 877422 223567899999999 8998887763
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0013 Score=41.42 Aligned_cols=32 Identities=28% Similarity=0.471 Sum_probs=27.2
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeC
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDL 47 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~ 47 (180)
.+....+|||||.|.+...|.+. +....|+|.
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 35678999999999999999998 555788885
|
; GO: 0008168 methyltransferase activity |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.047 Score=39.72 Aligned_cols=85 Identities=15% Similarity=0.125 Sum_probs=50.0
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCcccCC-----CccEEEec--
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQFIP-----PSDAFFFK-- 80 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~~~~-----~~D~v~~~-- 80 (180)
-.+++||-+|= .-..+.+++...+..+++.+|+.+ .++..++ .-+++....|+..++| .||+++..
T Consensus 43 L~gk~il~lGD-DDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP 121 (243)
T PF01861_consen 43 LEGKRILFLGD-DDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP 121 (243)
T ss_dssp STT-EEEEES--TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---
T ss_pred ccCCEEEEEcC-CcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC
Confidence 35788999983 334555566566678999999966 6666653 4459999999987665 59998872
Q ss_pred cccccCChHHHHHHHHHHHHhhcc
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIAS 104 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p 104 (180)
.++ +...-++.+..+.||.
T Consensus 122 yT~-----~G~~LFlsRgi~~Lk~ 140 (243)
T PF01861_consen 122 YTP-----EGLKLFLSRGIEALKG 140 (243)
T ss_dssp SSH-----HHHHHHHHHHHHTB-S
T ss_pred CCH-----HHHHHHHHHHHHHhCC
Confidence 332 3455889999999998
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.024 Score=44.05 Aligned_cols=109 Identities=12% Similarity=0.191 Sum_probs=74.6
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCC--CeEEEeeCch-hhccCCC------CCCeeEEecCCcc---cCC---CccEE
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPG--IKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ---FIP---PSDAF 77 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~--~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~---~~~---~~D~v 77 (180)
..++.+|||..++.|.=|..+++..++ ..++++|.+. -+...+. ..++...+.|... ..+ .||.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 467799999999999999988888654 5669999954 4444432 3455666766532 112 39999
Q ss_pred Ee------ccccccCCh--------------HHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCc
Q 030291 78 FF------KTVFHFFDD--------------EDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDD 124 (180)
Q Consensus 78 ~~------~~~l~~~~~--------------~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~ 124 (180)
++ .+++.--|+ ..+.++|....+.||| ||.++.+.+.......+
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~---GG~LVYSTCS~~~eENE 297 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKP---GGVLVYSTCSLTPEENE 297 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEccCCchhcCH
Confidence 86 334432222 2355899999999999 89888887765544433
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.019 Score=44.22 Aligned_cols=151 Identities=17% Similarity=0.206 Sum_probs=77.2
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHH--------C--------CCCeEEEeeCch-hhcc-CCC----------CCCe--eE
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEA--------F--------PGIKCTVLDLPH-AVTD-MPQ----------TDNL--KY 62 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~--------~--------~~~~~~~~D~~~-~~~~-a~~----------~~~~--~~ 62 (180)
.+..-+|+|+||.+|.++..+... + |...++.-|+|. .... .+. ..++ ..
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 456678999999999988765432 1 235778888854 1111 111 2333 23
Q ss_pred EecCCcc---cCCCccEEEeccccccCCh-------------------------------------HHHHHHHHHHHHhh
Q 030291 63 IEGDMFQ---FIPPSDAFFFKTVFHFFDD-------------------------------------EDCLKLLKKCREAI 102 (180)
Q Consensus 63 ~~~d~~~---~~~~~D~v~~~~~l~~~~~-------------------------------------~~~~~~l~~~~~~L 102 (180)
+.+++.+ +..+.|++++..++|++.. .++..+|+.=++=|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 4577766 2336999999999988742 12334555556778
Q ss_pred ccCCCCcEEEEEEeeeCCCCCchh--------hhhhh------hccceeeE--eecCCcccCHHHHHHHHHHcC-CeEEE
Q 030291 103 ASNGERGKVLIIDIVIDEKEDDRE--------LTESK------LLFDIFMN--FNVGGKERTEQEWGSLFVNAG-FTHYK 165 (180)
Q Consensus 103 ~p~~~~G~~~~~~~~~~~~~~~~~--------~~~~~------~~~~~~~~--~~~~~~~~~~~~~~~~l~~aG-f~~~~ 165 (180)
+| ||.+++.-...++...... +...+ ...+.... ...+...++.+|+.+.+++.| |++.+
T Consensus 174 v~---GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~~ 250 (334)
T PF03492_consen 174 VP---GGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIEK 250 (334)
T ss_dssp EE---EEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEEE
T ss_pred cc---CcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEEE
Confidence 99 8888888776655211110 00000 00000000 012234578999999999776 55544
Q ss_pred E
Q 030291 166 I 166 (180)
Q Consensus 166 ~ 166 (180)
+
T Consensus 251 l 251 (334)
T PF03492_consen 251 L 251 (334)
T ss_dssp E
T ss_pred E
Confidence 4
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.011 Score=41.47 Aligned_cols=84 Identities=21% Similarity=0.365 Sum_probs=57.9
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCC---------CCCeeEEecCCccc------------CCC
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ---------TDNLKYIEGDMFQF------------IPP 73 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~---------~~~~~~~~~d~~~~------------~~~ 73 (180)
+...|+.+|||--....++....++.+++-+|++++++..++ ..+.+++..|+.+. ...
T Consensus 78 ~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~ 157 (183)
T PF04072_consen 78 GARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDR 157 (183)
T ss_dssp TESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTS
T ss_pred CCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCC
Confidence 345899999999999888888767888999999885555443 12356799999641 113
Q ss_pred ccEEEeccccccCChHHHHHHHHHH
Q 030291 74 SDAFFFKTVFHFFDDEDCLKLLKKC 98 (180)
Q Consensus 74 ~D~v~~~~~l~~~~~~~~~~~l~~~ 98 (180)
.-++++-+++.|++......+++.+
T Consensus 158 ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 158 PTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp EEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred CeEEEEcchhhcCCHHHHHHHHHHh
Confidence 5588889999999998877777765
|
It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.024 Score=39.73 Aligned_cols=98 Identities=14% Similarity=0.216 Sum_probs=62.4
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCccc---C---CCccEEEec
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQF---I---PPSDAFFFK 80 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~---~---~~~D~v~~~ 80 (180)
.+.++||+=+|+|.++...+.++ -.+++.+|.+. .....++ ..++.++..|.... . +.||+|+.-
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 47889999999999999998886 45789999854 4444432 47888888888532 1 149999983
Q ss_pred cccc-cCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 81 TVFH-FFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 81 ~~l~-~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
=-++ -+-+....-.+..-..+|+| +.+++++..
T Consensus 122 PPy~~~l~~~~~~~~~~~~~~~L~~----~~~iv~E~~ 155 (187)
T COG0742 122 PPYAKGLLDKELALLLLEENGWLKP----GALIVVEHD 155 (187)
T ss_pred CCCccchhhHHHHHHHHHhcCCcCC----CcEEEEEeC
Confidence 3332 11122212112224478999 555555543
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.026 Score=42.40 Aligned_cols=107 Identities=13% Similarity=0.123 Sum_probs=74.1
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCC-CCeEEEeeCch-hhccCCC------CCCeeEEecCCccc----CC-CccEEEe
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFP-GIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQF----IP-PSDAFFF 79 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~----~~-~~D~v~~ 79 (180)
..++.+|||..++.|.-+..+++... ...+++.|.+. .+...+. ..++.....|.... .+ .||.|++
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 45678899999999999999988865 66899999854 4444432 45677776666432 23 4999996
Q ss_pred ------ccccccCCh--------------HHHHHHHHHHHHhh----ccCCCCcEEEEEEeeeCCCC
Q 030291 80 ------KTVFHFFDD--------------EDCLKLLKKCREAI----ASNGERGKVLIIDIVIDEKE 122 (180)
Q Consensus 80 ------~~~l~~~~~--------------~~~~~~l~~~~~~L----~p~~~~G~~~~~~~~~~~~~ 122 (180)
.+++..-++ ..+.++|+.+.+.+ +| ||.++.+........
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~---gG~lvYsTCS~~~eE 226 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKP---GGRLVYSTCSLSPEE 226 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEE---EEEEEEEESHHHGGG
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccC---CCeEEEEeccHHHHH
Confidence 223333332 13457899999999 99 888888776554443
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.0065 Score=45.95 Aligned_cols=67 Identities=19% Similarity=0.282 Sum_probs=48.8
Q ss_pred CcccccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeC-chhhccCCC-----CCCeeEEecCCcc
Q 030291 1 MATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDL-PHAVTDMPQ-----TDNLKYIEGDMFQ 69 (180)
Q Consensus 1 ~~~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~-----~~~~~~~~~d~~~ 69 (180)
|.+++++.+. ..++..++|.=-|.|..+..+++..|+.+++++|- +.+++.+++ ..++.++++++.+
T Consensus 8 ll~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~ 80 (310)
T PF01795_consen 8 LLKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSN 80 (310)
T ss_dssp THHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGG
T ss_pred cHHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHH
Confidence 3456677776 77888999999999999999999998899999999 557766654 4788888888843
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.0017 Score=43.78 Aligned_cols=42 Identities=21% Similarity=0.347 Sum_probs=37.8
Q ss_pred CCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 72 PPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 72 ~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
.+.|+|++.++++|+.-.+-..+++.|.+.||| ||++-++-+
T Consensus 46 ns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp---~G~LriAvP 87 (185)
T COG4627 46 NSVDAIYAEHVLEHLTYDEGTSALKECHRFLRP---GGKLRIAVP 87 (185)
T ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCc---CcEEEEEcC
Confidence 369999999999999988888999999999999 999888654
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.0089 Score=46.31 Aligned_cols=68 Identities=9% Similarity=0.029 Sum_probs=51.8
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCC--------------------------------C-------eEEEeeCch-hhc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPG--------------------------------I-------KCTVLDLPH-AVT 52 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~--------------------------------~-------~~~~~D~~~-~~~ 52 (180)
+.+...++|-=||+|.+....+...++ + .++++|+.. +++
T Consensus 189 w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~ 268 (381)
T COG0116 189 WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIE 268 (381)
T ss_pred CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHH
Confidence 556679999999999998876655421 1 267999955 888
Q ss_pred cCCC-------CCCeeEEecCCcc-cC--CCccEEEec
Q 030291 53 DMPQ-------TDNLKYIEGDMFQ-FI--PPSDAFFFK 80 (180)
Q Consensus 53 ~a~~-------~~~~~~~~~d~~~-~~--~~~D~v~~~ 80 (180)
.|+. .+.|+|.+.|+.. .. ..+|+||++
T Consensus 269 ~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~N 306 (381)
T COG0116 269 GAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISN 306 (381)
T ss_pred HHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeC
Confidence 8874 5779999999965 22 369999996
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.0053 Score=38.92 Aligned_cols=87 Identities=13% Similarity=0.214 Sum_probs=42.5
Q ss_pred CccEEEeccccccC----ChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccC
Q 030291 73 PSDAFFFKTVFHFF----DDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERT 148 (180)
Q Consensus 73 ~~D~v~~~~~l~~~----~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (180)
.||+|+|.++.-++ .|+....+++++.+.|+| | ++++.++- + ...+........... .....-...
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~p---G-G~lilEpQ---~--w~sY~~~~~~~~~~~-~n~~~i~lr 70 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRP---G-GILILEPQ---P--WKSYKKAKRLSEEIR-ENYKSIKLR 70 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEE---E-EEEEEE--------HHHHHTTTTS-HHHH-HHHHH----
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCC---C-CEEEEeCC---C--cHHHHHHhhhhHHHH-hHHhceEEC
Confidence 48999998775433 577788999999999999 4 55554431 1 111111110000000 000001135
Q ss_pred HHHHHHHHHH--cCCeEEEEeec
Q 030291 149 EQEWGSLFVN--AGFTHYKIAPI 169 (180)
Q Consensus 149 ~~~~~~~l~~--aGf~~~~~~~~ 169 (180)
++.+.+.|.+ -||..++....
T Consensus 71 P~~F~~~L~~~evGF~~~e~~~~ 93 (110)
T PF06859_consen 71 PDQFEDYLLEPEVGFSSVEELGV 93 (110)
T ss_dssp GGGHHHHHTSTTT---EEEEE--
T ss_pred hHHHHHHHHhcccceEEEEEccc
Confidence 6678888887 59998876544
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.058 Score=39.29 Aligned_cols=96 Identities=14% Similarity=0.099 Sum_probs=69.3
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHH-CCCCeEEEeeCch-----hhccCCCCCCeeEEecCCcccC------CCccEEEec
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEA-FPGIKCTVLDLPH-----AVTDMPQTDNLKYIEGDMFQFI------PPSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~-~~~~~~~~~D~~~-----~~~~a~~~~~~~~~~~d~~~~~------~~~D~v~~~ 80 (180)
++++.+||-+|+++|......... .|.--+++++.+. .+..|++..|+-.+.-|+..+. +-.|+|++
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFa- 232 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFA- 232 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEec-
Confidence 688999999999999988777765 4666788888732 5777777888888888885432 24677666
Q ss_pred cccccCChHH-HHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 81 TVFHFFDDED-CLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 81 ~~l~~~~~~~-~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
-+..++ .+-+.-+....||+ ||.++++-.
T Consensus 233 ----Dvaqpdq~RivaLNA~~FLk~---gGhfvisik 262 (317)
T KOG1596|consen 233 ----DVAQPDQARIVALNAQYFLKN---GGHFVISIK 262 (317)
T ss_pred ----cCCCchhhhhhhhhhhhhhcc---CCeEEEEEe
Confidence 233333 33445577789999 999998754
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.021 Score=41.84 Aligned_cols=73 Identities=16% Similarity=0.305 Sum_probs=51.5
Q ss_pred cccccccccccCCC--eEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-h-------hccCC------C--CCCeeEEec
Q 030291 4 LLVKDCRPIFQGLR--SMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-A-------VTDMP------Q--TDNLKYIEG 65 (180)
Q Consensus 4 ~l~~~~~~~~~~~~--~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~-------~~~a~------~--~~~~~~~~~ 65 (180)
.|++.+. ++++. +|||+=+|+|..+..++.. +++++.+|-+. + +..+. . ..+++++++
T Consensus 77 ~l~kAvg--lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~ 152 (250)
T PRK10742 77 AVAKAVG--IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152 (250)
T ss_pred HHHHHhC--CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC
Confidence 3555665 66766 9999999999999999988 78899999643 2 22211 0 146888888
Q ss_pred CCcccC----CCccEEEec
Q 030291 66 DMFQFI----PPSDAFFFK 80 (180)
Q Consensus 66 d~~~~~----~~~D~v~~~ 80 (180)
|..+.+ ..||+|++-
T Consensus 153 da~~~L~~~~~~fDVVYlD 171 (250)
T PRK10742 153 SSLTALTDITPRPQVVYLD 171 (250)
T ss_pred cHHHHHhhCCCCCcEEEEC
Confidence 885532 258998863
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.0064 Score=48.57 Aligned_cols=55 Identities=20% Similarity=0.356 Sum_probs=44.6
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ 69 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~ 69 (180)
++....++|+-||||.++..+++.. .+++|++++. .+..|+. -.|.+|+++-..+
T Consensus 381 l~~~k~llDv~CGTG~iglala~~~--~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARGV--KRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhccc--cceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 5677889999999999999998884 4699999954 8888874 4788999995534
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.11 Score=43.84 Aligned_cols=94 Identities=17% Similarity=0.179 Sum_probs=57.7
Q ss_pred CCeEEEeCCcccHHHHHHHHHC-------C-----CCeEEEeeC-c---hhhccCC----------------------C-
Q 030291 16 LRSMVDVGGGTGAFARIISEAF-------P-----GIKCTVLDL-P---HAVTDMP----------------------Q- 56 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~~-------~-----~~~~~~~D~-~---~~~~~a~----------------------~- 56 (180)
.-+|+|+|=|+|.+.....+.+ | ..+++.+|. + +.+..+. .
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 4689999999999777665433 3 357888885 2 1111110 0
Q ss_pred ------CC--CeeEEecCCcccC----CCccEEEecc-ccccCChHHHHHHHHHHHHhhccCCCCcEEE
Q 030291 57 ------TD--NLKYIEGDMFQFI----PPSDAFFFKT-VFHFFDDEDCLKLLKKCREAIASNGERGKVL 112 (180)
Q Consensus 57 ------~~--~~~~~~~d~~~~~----~~~D~v~~~~-~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~ 112 (180)
.. ++++..+|+.+.+ ..+|+++.-. .-..-|+--..++++++++.++| ||.+.
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~---~~~~~ 203 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARP---GATLA 203 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCC---CCEEE
Confidence 12 3446667775422 2489988743 33333333345889999999999 55554
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.012 Score=42.20 Aligned_cols=53 Identities=19% Similarity=0.279 Sum_probs=43.6
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQ 69 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~ 69 (180)
....|+|.-||.|..+..++.+++. ++++|++. -+..|+. ..+++|+++|+++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~--VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld 154 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPY--VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLD 154 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCe--EEEEeccHHHHHHHhccceeecCCceeEEEechHHH
Confidence 5677999999999999999988554 99999955 5666653 5799999999976
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.41 Score=37.16 Aligned_cols=95 Identities=16% Similarity=0.163 Sum_probs=67.0
Q ss_pred CCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCc--------ccC-C-CccEEEeccc
Q 030291 15 GLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMF--------QFI-P-PSDAFFFKTV 82 (180)
Q Consensus 15 ~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~--------~~~-~-~~D~v~~~~~ 82 (180)
...+++=+|||+ |.++..+++...-.+++.+|.++ .++.|++..........-. +.. + .+|+++-...
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G 247 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG 247 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC
Confidence 344899999999 99998888888778899999955 8888876222222111110 111 2 4999886444
Q ss_pred cccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCC
Q 030291 83 FHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDE 120 (180)
Q Consensus 83 l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~ 120 (180)
. + ..+..+.+++++ +|.+.+.......
T Consensus 248 ~-----~---~~~~~ai~~~r~---gG~v~~vGv~~~~ 274 (350)
T COG1063 248 S-----P---PALDQALEALRP---GGTVVVVGVYGGE 274 (350)
T ss_pred C-----H---HHHHHHHHHhcC---CCEEEEEeccCCc
Confidence 1 1 569999999999 9999998877555
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.018 Score=38.61 Aligned_cols=106 Identities=12% Similarity=0.110 Sum_probs=66.6
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcc-cCCCc
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQ-FIPPS 74 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~-~~~~~ 74 (180)
++++.+. -++..+.+|+|+|.|......++.. -...+++++.+ .+...+- ..+..|..-|.+. ++..|
T Consensus 63 nVLSll~--~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy 139 (199)
T KOG4058|consen 63 NVLSLLR--GNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDY 139 (199)
T ss_pred HHHHHcc--CCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccccc
Confidence 4455555 4667899999999999988877774 34578999854 4444431 5677788888866 45556
Q ss_pred cEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCC
Q 030291 75 DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDE 120 (180)
Q Consensus 75 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~ 120 (180)
..++...+-.-++ .+-.+++.-+.. +..++-.-+..+.
T Consensus 140 ~~vviFgaes~m~-----dLe~KL~~E~p~---nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 140 RNVVIFGAESVMP-----DLEDKLRTELPA---NTRVVACRFPLPT 177 (199)
T ss_pred ceEEEeehHHHHh-----hhHHHHHhhCcC---CCeEEEEecCCCc
Confidence 6555533322222 334455556666 6777766554443
|
|
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.041 Score=40.57 Aligned_cols=34 Identities=21% Similarity=0.471 Sum_probs=25.9
Q ss_pred CCeEEEeCCcccHHHHHHHHHC--------CCCeEEEeeCch
Q 030291 16 LRSMVDVGGGTGAFARIISEAF--------PGIKCTVLDLPH 49 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~~--------~~~~~~~~D~~~ 49 (180)
+-+|+|+|+|+|.++..++... ...+++.+|.|+
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp 60 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISP 60 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCH
Confidence 4699999999999999988763 246899999865
|
; PDB: 4F3N_A 1ZKD_B. |
| >PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.089 Score=35.30 Aligned_cols=54 Identities=22% Similarity=0.304 Sum_probs=30.9
Q ss_pred CCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCCCCCeeEEecCCcc
Q 030291 16 LRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQ 69 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~d~~~ 69 (180)
..-|||+|-|.|..-..|.+.+|+.+++++|-.-......-.+.-.++.+|+.+
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~P~~~~~ilGdi~~ 82 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSSTPPEEDLILGDIRE 82 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG---GGGEEES-HHH
T ss_pred CCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCCCchHheeeccHHH
Confidence 467999999999999999999999999999942111111113445667888854
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.29 Score=37.32 Aligned_cols=96 Identities=14% Similarity=0.148 Sum_probs=67.8
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCC-c--cc--------C--CCccEE
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDM-F--QF--------I--PPSDAF 77 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~-~--~~--------~--~~~D~v 77 (180)
.+.++++|=+|+|+ |..+...++.+.-.+++.+|+.+ .++.|++.+--.+.+..- . +. . ..+|+.
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~ 246 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVT 246 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeE
Confidence 57789999999998 88888888888667899999965 899888721111111111 0 10 1 138888
Q ss_pred EeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeC
Q 030291 78 FFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVID 119 (180)
Q Consensus 78 ~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~ 119 (180)
+-...++ ..++....++++ +|.++++.+..+
T Consensus 247 ~dCsG~~--------~~~~aai~a~r~---gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 247 FDCSGAE--------VTIRAAIKATRS---GGTVVLVGMGAE 277 (354)
T ss_pred EEccCch--------HHHHHHHHHhcc---CCEEEEeccCCC
Confidence 8766654 557778899999 999888876543
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.072 Score=39.95 Aligned_cols=100 Identities=16% Similarity=0.130 Sum_probs=67.8
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----------CCCeeEEecCCcc-----cCCCccE
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----------TDNLKYIEGDMFQ-----FIPPSDA 76 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----------~~~~~~~~~d~~~-----~~~~~D~ 76 (180)
..+++++|=||.|.|...+...++-.--.+...|+.+ .++..++ .+++....+|-.. ....||+
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 6789999999999999988877663222466777654 3433332 5788888887644 2346999
Q ss_pred EEec--cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 77 FFFK--TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 77 v~~~--~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
|+.- ....--...-...+..-+.++||+ +|.+....
T Consensus 199 ii~dssdpvgpa~~lf~~~~~~~v~~aLk~---dgv~~~q~ 236 (337)
T KOG1562|consen 199 IITDSSDPVGPACALFQKPYFGLVLDALKG---DGVVCTQG 236 (337)
T ss_pred EEEecCCccchHHHHHHHHHHHHHHHhhCC---CcEEEEec
Confidence 9973 233222223344678888999999 78777754
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.052 Score=40.80 Aligned_cols=66 Identities=18% Similarity=0.219 Sum_probs=53.3
Q ss_pred cccccccccccccCCCeEEEeCCcccHHHHHHHHHCCC-CeEEEeeC-chhhccCCC-----CCCeeEEecCCcc
Q 030291 2 ATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPG-IKCTVLDL-PHAVTDMPQ-----TDNLKYIEGDMFQ 69 (180)
Q Consensus 2 ~~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~-~~~~~~D~-~~~~~~a~~-----~~~~~~~~~d~~~ 69 (180)
.+++++.+. .++....+|.--|.|..+..+++.++. .+++++|- +.+++.+++ .+++++++.++.+
T Consensus 12 l~E~i~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~ 84 (314)
T COG0275 12 LNEVVELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN 84 (314)
T ss_pred HHHHHHhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence 345566666 777899999999999999999999864 45999999 458888875 5689999998843
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.037 Score=41.72 Aligned_cols=76 Identities=13% Similarity=0.171 Sum_probs=40.3
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC--------CCCeeEEecCC----cccC----CCccE
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ--------TDNLKYIEGDM----FQFI----PPSDA 76 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~--------~~~~~~~~~d~----~~~~----~~~D~ 76 (180)
+...++||||+|....--.|.....+-++++.|+.+ .++.|++ ..+|+++...- +... ..||+
T Consensus 101 ~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~df 180 (299)
T PF05971_consen 101 PEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDF 180 (299)
T ss_dssp S---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEE
T ss_pred ccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeE
Confidence 346789999999986654444333377899999955 7888864 56788875532 2211 25999
Q ss_pred EEeccccccCChH
Q 030291 77 FFFKTVFHFFDDE 89 (180)
Q Consensus 77 v~~~~~l~~~~~~ 89 (180)
.+|+=-+|.-.++
T Consensus 181 tmCNPPFy~s~~e 193 (299)
T PF05971_consen 181 TMCNPPFYSSQEE 193 (299)
T ss_dssp EEE-----SS---
T ss_pred EecCCccccChhh
Confidence 9998777655443
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.4 Score=39.16 Aligned_cols=96 Identities=9% Similarity=0.085 Sum_probs=63.5
Q ss_pred cCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCc--------------cc-------
Q 030291 14 QGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMF--------------QF------- 70 (180)
Q Consensus 14 ~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~--------------~~------- 70 (180)
.++.+|+=+|+|. |..+...++.. +++++++|... .++.+++.+ .++...|.. +.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aeslG-A~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~ 240 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVESMG-AEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA 240 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcC-CeEEEeccccccccccchhhhcchhHHHHHHH
Confidence 4689999999998 77777777776 67899999954 777776522 222211110 00
Q ss_pred -----CCCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 71 -----IPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 71 -----~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
...+|++|.......-+.+. .+.++..+.+|| ||.++....
T Consensus 241 ~~~~~~~gaDVVIetag~pg~~aP~--lit~~~v~~mkp---GgvIVdvg~ 286 (509)
T PRK09424 241 LFAEQAKEVDIIITTALIPGKPAPK--LITAEMVASMKP---GSVIVDLAA 286 (509)
T ss_pred HHHhccCCCCEEEECCCCCcccCcc--hHHHHHHHhcCC---CCEEEEEcc
Confidence 13589998866543222232 225999999999 888887765
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.097 Score=42.03 Aligned_cols=95 Identities=19% Similarity=0.373 Sum_probs=59.8
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeC-----chhhccCCCCCCeeEEecCCcccC---C-CccEEEecccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDL-----PHAVTDMPQTDNLKYIEGDMFQFI---P-PSDAFFFKTVF 83 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~-----~~~~~~a~~~~~~~~~~~d~~~~~---~-~~D~v~~~~~l 83 (180)
...-+.|+|..+|.|.++.+|.+. . +..... +..+...-..+=| -.-.|..+.+ | .||++.+.+++
T Consensus 363 ~~~iRNVMDMnAg~GGFAAAL~~~--~--VWVMNVVP~~~~ntL~vIydRGLI-G~yhDWCE~fsTYPRTYDLlHA~~lf 437 (506)
T PF03141_consen 363 WGRIRNVMDMNAGYGGFAAALIDD--P--VWVMNVVPVSGPNTLPVIYDRGLI-GVYHDWCEAFSTYPRTYDLLHADGLF 437 (506)
T ss_pred ccceeeeeeecccccHHHHHhccC--C--ceEEEecccCCCCcchhhhhcccc-hhccchhhccCCCCcchhheehhhhh
Confidence 345678999999999999999765 3 333322 1111111111111 1122333332 3 59999999888
Q ss_pred ccCChH-HHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 84 HFFDDE-DCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 84 ~~~~~~-~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
....+. ....+|-++=|.|+| +|.+++-|
T Consensus 438 s~~~~rC~~~~illEmDRILRP---~G~~iiRD 467 (506)
T PF03141_consen 438 SLYKDRCEMEDILLEMDRILRP---GGWVIIRD 467 (506)
T ss_pred hhhcccccHHHHHHHhHhhcCC---CceEEEec
Confidence 776542 344789999999999 99998865
|
; GO: 0008168 methyltransferase activity |
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.092 Score=39.72 Aligned_cols=99 Identities=19% Similarity=0.335 Sum_probs=63.0
Q ss_pred CCCeEEEeCCcccHHHHHHHHHC--------------------CCCeEEEeeCc---hhhccCCC---------------
Q 030291 15 GLRSMVDVGGGTGAFARIISEAF--------------------PGIKCTVLDLP---HAVTDMPQ--------------- 56 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~--------------------~~~~~~~~D~~---~~~~~a~~--------------- 56 (180)
+..+||.||+|.|.-..+++..+ +...++.+|+. .++.+...
T Consensus 86 ~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~ 165 (315)
T PF11312_consen 86 KSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAA 165 (315)
T ss_pred cCceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccc
Confidence 34799999999986444443332 12478999972 23333221
Q ss_pred --------CCCeeEEecCCcccC----------CCccEEEeccccccCC---hHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 57 --------TDNLKYIEGDMFQFI----------PPSDAFFFKTVFHFFD---DEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 57 --------~~~~~~~~~d~~~~~----------~~~D~v~~~~~l~~~~---~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
.-+++|.+.|++... +..|+|-..+++..+- -.+..++|.++-..++| |-.++++|
T Consensus 166 ~~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~---GslLLVvD 242 (315)
T PF11312_consen 166 NWPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPP---GSLLLVVD 242 (315)
T ss_pred ccccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCC---CcEEEEEc
Confidence 235778888886511 2367776666554332 23345899999999999 77777776
Q ss_pred e
Q 030291 116 I 116 (180)
Q Consensus 116 ~ 116 (180)
.
T Consensus 243 S 243 (315)
T PF11312_consen 243 S 243 (315)
T ss_pred C
Confidence 4
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.047 Score=39.69 Aligned_cols=77 Identities=25% Similarity=0.403 Sum_probs=44.1
Q ss_pred cccccccccccCC--CeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhh----ccC----CC--------CCCeeEEec
Q 030291 4 LLVKDCRPIFQGL--RSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAV----TDM----PQ--------TDNLKYIEG 65 (180)
Q Consensus 4 ~l~~~~~~~~~~~--~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~----~~a----~~--------~~~~~~~~~ 65 (180)
.|++.+. ++++ .+|||.-+|.|.-+..++.. +++++++|-+..+ ..+ .+ ..+++++++
T Consensus 64 ~l~kA~G--lk~~~~~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~ 139 (234)
T PF04445_consen 64 PLAKAVG--LKPGMRPSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHG 139 (234)
T ss_dssp HHHHHTT---BTTB---EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES
T ss_pred HHHHHhC--CCCCCCCEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcC
Confidence 3455555 5554 38999999999999888766 7789999975522 211 11 258999999
Q ss_pred CCcccC----CCccEEEeccccc
Q 030291 66 DMFQFI----PPSDAFFFKTVFH 84 (180)
Q Consensus 66 d~~~~~----~~~D~v~~~~~l~ 84 (180)
|..+.+ .++|+|+.-=|+.
T Consensus 140 d~~~~L~~~~~s~DVVY~DPMFp 162 (234)
T PF04445_consen 140 DALEYLRQPDNSFDVVYFDPMFP 162 (234)
T ss_dssp -CCCHCCCHSS--SEEEE--S--
T ss_pred CHHHHHhhcCCCCCEEEECCCCC
Confidence 987743 3699999854543
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.17 Score=39.75 Aligned_cols=58 Identities=12% Similarity=0.127 Sum_probs=50.5
Q ss_pred CCCeeEEecCCcc-----cCCCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 57 TDNLKYIEGDMFQ-----FIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 57 ~~~~~~~~~d~~~-----~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
..+++++++++.+ +.+++|.++.+..+.++++....+.++++.+.++| ||++++-...
T Consensus 274 ~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~p---gaRV~~Rsa~ 336 (380)
T PF11899_consen 274 LDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARP---GARVLWRSAA 336 (380)
T ss_pred CCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCC---CCEEEEeeCC
Confidence 5889999999866 23469999999999999999999999999999999 9999986544
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=93.59 E-value=1 Score=35.25 Aligned_cols=100 Identities=15% Similarity=0.114 Sum_probs=62.6
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecC----Ccc------cCCCccEEEec
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGD----MFQ------FIPPSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d----~~~------~~~~~D~v~~~ 80 (180)
..++.+||.+|+|. |..+..+++.....+++++|.++ ..+.+++.....++... ..+ ....+|+++-.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence 45678899999988 88888888887433588888744 66666543222222211 111 11248988764
Q ss_pred ccc---------------ccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 81 TVF---------------HFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 81 ~~l---------------~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
-.- +..++.. ..+.++.+.+++ +|.+++....
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~---~G~iv~~g~~ 308 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETDRP--DALREAIQAVRK---GGTVSIIGVY 308 (386)
T ss_pred CCCcccccccccccccccccccCch--HHHHHHHHHhcc---CCEEEEEcCC
Confidence 211 1112333 568899999999 8999887643
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.68 Score=30.30 Aligned_cols=87 Identities=16% Similarity=0.112 Sum_probs=53.0
Q ss_pred CCCeeEEecCCcc---cC-CCccEEEeccc-cccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhh
Q 030291 57 TDNLKYIEGDMFQ---FI-PPSDAFFFKTV-FHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESK 131 (180)
Q Consensus 57 ~~~~~~~~~d~~~---~~-~~~D~v~~~~~-l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~ 131 (180)
.-.+++..+|+.+ .+ ..+|+++.-.. -..-++--..++++++++.+++ || .+.+-
T Consensus 30 ~v~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~---~~-~l~Ty---------------- 89 (124)
T PF05430_consen 30 NVTLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKP---GG-TLATY---------------- 89 (124)
T ss_dssp TEEEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEE---EE-EEEES----------------
T ss_pred CEEEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCC---Cc-EEEEe----------------
Confidence 3456778888855 22 46999887542 2222222244889999999999 44 33311
Q ss_pred hccceeeEeecCCcccCHHHHHHHHHHcCCeEEEEeecCCceeEEEE
Q 030291 132 LLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFGIKSLIEV 178 (180)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~ 178 (180)
.....++..|.++||.+.+.-..++...++.+
T Consensus 90 ---------------s~a~~Vr~~L~~aGF~v~~~~g~g~Kr~~~~a 121 (124)
T PF05430_consen 90 ---------------SSAGAVRRALQQAGFEVEKVPGFGRKREMLRA 121 (124)
T ss_dssp -----------------BHHHHHHHHHCTEEEEEEE-STTSSEEEEE
T ss_pred ---------------echHHHHHHHHHcCCEEEEcCCCCCcchheEE
Confidence 12245788999999999888877776444443
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.064 Score=41.33 Aligned_cols=39 Identities=15% Similarity=0.358 Sum_probs=30.6
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHH----C----CCCeEEEeeCchhh
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEA----F----PGIKCTVLDLPHAV 51 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~----~----~~~~~~~~D~~~~~ 51 (180)
.+.+-.++|||+|+|.++..++.. + ..+++..+|.|+.+
T Consensus 75 ~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L 121 (370)
T COG1565 75 RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPEL 121 (370)
T ss_pred CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHH
Confidence 455678999999999999887754 2 36799999997633
|
|
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.14 Score=38.20 Aligned_cols=97 Identities=9% Similarity=0.028 Sum_probs=54.8
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----------------CCCeeEEec---CCcc-cCC
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----------------TDNLKYIEG---DMFQ-FIP 72 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----------------~~~~~~~~~---d~~~-~~~ 72 (180)
-..++|||+|||.|.-........ .+++...|.+. .+....- ..-....+. |-.. ...
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~-~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~ 193 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKG-AVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTE 193 (282)
T ss_pred ecCceeEecCCcccccchhhhhhc-cceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhcc
Confidence 457899999999998777665553 26677777644 3322110 011111222 1100 112
Q ss_pred --CccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 73 --PSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 73 --~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
.||+|.++-+++......... .-.....+++ +|.++++.
T Consensus 194 ~~~ydlIlsSetiy~~~~~~~~~-~~~r~~l~~~---D~~~~~aA 234 (282)
T KOG2920|consen 194 RTHYDLILSSETIYSIDSLAVLY-LLHRPCLLKT---DGVFYVAA 234 (282)
T ss_pred ccchhhhhhhhhhhCcchhhhhH-hhhhhhcCCc---cchhhhhh
Confidence 599999988887655554221 3344455566 77777754
|
|
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.16 Score=37.72 Aligned_cols=35 Identities=20% Similarity=0.470 Sum_probs=30.5
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHC-----CCCeEEEeeC
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAF-----PGIKCTVLDL 47 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~-----~~~~~~~~D~ 47 (180)
+++...++|.|||.|.++..+.+.. +...++.+|-
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR 55 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDR 55 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEec
Confidence 5677889999999999999998887 5678999997
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=92.66 E-value=1.3 Score=31.40 Aligned_cols=104 Identities=13% Similarity=0.128 Sum_probs=70.5
Q ss_pred cCCCeEEEeCCcccHHHHHHHH----HCCCCeEEEeeCch-hhccCC-CCCCeeEEecCCcccC---------CCc-cEE
Q 030291 14 QGLRSMVDVGGGTGAFARIISE----AFPGIKCTVLDLPH-AVTDMP-QTDNLKYIEGDMFQFI---------PPS-DAF 77 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~----~~~~~~~~~~D~~~-~~~~a~-~~~~~~~~~~d~~~~~---------~~~-D~v 77 (180)
..++.|+|+|.-.|..+..++. .....++.++|++- .++.+. +.+++.++.++-.++. ..| -+.
T Consensus 68 ~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIf 147 (237)
T COG3510 68 LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIF 147 (237)
T ss_pred cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEE
Confidence 4578899999988876555543 33457899999854 444443 3789999999886531 123 334
Q ss_pred EeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCC
Q 030291 78 FFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKE 122 (180)
Q Consensus 78 ~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~ 122 (180)
++...-|+..... ..|+-...+|.. |-++++.|.+..+-+
T Consensus 148 vilDsdHs~~hvL--Ael~~~~pllsa---G~Y~vVeDs~v~dlp 187 (237)
T COG3510 148 VILDSDHSMEHVL--AELKLLAPLLSA---GDYLVVEDSNVNDLP 187 (237)
T ss_pred EEecCCchHHHHH--HHHHHhhhHhhc---CceEEEecccccCCC
Confidence 4455666655555 448888899999 888888887765543
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.63 E-value=3.8 Score=31.56 Aligned_cols=95 Identities=14% Similarity=0.197 Sum_probs=56.7
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHH-CCCCeEEEeeCch-hhccCCCCCCeeEEecCCcccCCCccEEEeccccccCChH
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEA-FPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDDE 89 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~-~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~~ 89 (180)
.+++++||=+|||. |.++..+++. ....+++++|.++ .++.+++... .....+. .....+|+|+-... ..
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~-~~~~~~~-~~~~g~d~viD~~G-----~~ 233 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADE-TYLIDDI-PEDLAVDHAFECVG-----GR 233 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCc-eeehhhh-hhccCCcEEEECCC-----CC
Confidence 35678999999866 5566666664 4456789999854 5555554211 1111111 11124888874222 10
Q ss_pred HHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 90 DCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 90 ~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
.....+....+.|++ +|.+++....
T Consensus 234 ~~~~~~~~~~~~l~~---~G~iv~~G~~ 258 (341)
T cd08237 234 GSQSAINQIIDYIRP---QGTIGLMGVS 258 (341)
T ss_pred ccHHHHHHHHHhCcC---CcEEEEEeec
Confidence 011458888999999 9999987753
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=92.55 E-value=0.25 Score=35.83 Aligned_cols=95 Identities=21% Similarity=0.417 Sum_probs=62.8
Q ss_pred cccCCCeEEEeCCcccHHHHHHHHHC----C--CC---eEEEeeCchhhccCCCCCCeeEEecCCccc---------CC-
Q 030291 12 IFQGLRSMVDVGGGTGAFARIISEAF----P--GI---KCTVLDLPHAVTDMPQTDNLKYIEGDMFQF---------IP- 72 (180)
Q Consensus 12 ~~~~~~~iLdiG~G~G~~~~~l~~~~----~--~~---~~~~~D~~~~~~~a~~~~~~~~~~~d~~~~---------~~- 72 (180)
.+.+-.+++|+.+..|.++.-|.++. + +. .++++|+..|.. ...+..+++|+... ++
T Consensus 38 i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP----I~GV~qlq~DIT~~stae~Ii~hfgg 113 (294)
T KOG1099|consen 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP----IEGVIQLQGDITSASTAEAIIEHFGG 113 (294)
T ss_pred HHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc----cCceEEeecccCCHhHHHHHHHHhCC
Confidence 35677899999999999888776653 1 11 389999866432 34566778888541 12
Q ss_pred -CccEEEeccc-----cccCCh----HHHHHHHHHHHHhhccCCCCcEEEE
Q 030291 73 -PSDAFFFKTV-----FHFFDD----EDCLKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 73 -~~D~v~~~~~-----l~~~~~----~~~~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
..|+|+|-+. +|.+.. +.....|.-...+|+| ||.++-
T Consensus 114 ekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~---Gg~FVa 161 (294)
T KOG1099|consen 114 EKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKP---GGSFVA 161 (294)
T ss_pred CCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecC---CCeeeh
Confidence 5999998543 454433 2333456666789999 676654
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=92.50 E-value=0.43 Score=31.88 Aligned_cols=74 Identities=24% Similarity=0.371 Sum_probs=46.1
Q ss_pred eEEEeeCch-hhccCCC-------CCCeeEEecCCcc---cCC--CccEEEeccccccCCh---------HHHHHHHHHH
Q 030291 41 KCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQ---FIP--PSDAFFFKTVFHFFDD---------EDCLKLLKKC 98 (180)
Q Consensus 41 ~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~---~~~--~~D~v~~~~~l~~~~~---------~~~~~~l~~~ 98 (180)
+++++|+.+ +++..++ ..++++++.+=.. ..+ +.|+++.+.. |+|. ......++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLG--YLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLG--YLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEES--B-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECC--cCCCCCCCCCcCcHHHHHHHHHH
Confidence 478999955 7777764 3578888765522 222 5888777533 4432 2344779999
Q ss_pred HHhhccCCCCcEEEEEEeeeC
Q 030291 99 REAIASNGERGKVLIIDIVID 119 (180)
Q Consensus 99 ~~~L~p~~~~G~~~~~~~~~~ 119 (180)
.+.|+| ||.+.++-....
T Consensus 79 l~lL~~---gG~i~iv~Y~GH 96 (140)
T PF06962_consen 79 LELLKP---GGIITIVVYPGH 96 (140)
T ss_dssp HHHEEE---EEEEEEEE--ST
T ss_pred HHhhcc---CCEEEEEEeCCC
Confidence 999999 888888765433
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.29 E-value=0.13 Score=39.98 Aligned_cols=41 Identities=27% Similarity=0.584 Sum_probs=34.2
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCC
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMP 55 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~ 55 (180)
-+...++|+|.|.|.++..+.-.+ +.++.++|.+. ..++++
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~ 193 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQ 193 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHH
Confidence 467889999999999999988777 88999999876 555554
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.98 E-value=0.19 Score=39.91 Aligned_cols=52 Identities=21% Similarity=0.247 Sum_probs=38.8
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCc-hhhccCCC-------CCCeeEEecCC
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLP-HAVTDMPQ-------TDNLKYIEGDM 67 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~-~~~~~a~~-------~~~~~~~~~d~ 67 (180)
+..-+||||.|||.++....... .-++++++.- +|.+.+++ ..+|+++.-.-
T Consensus 66 gkv~vLdigtGTGLLSmMAvrag-aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrS 125 (636)
T KOG1501|consen 66 GKVFVLDIGTGTGLLSMMAVRAG-ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRS 125 (636)
T ss_pred ceEEEEEccCCccHHHHHHHHhc-CCeEEeehhhchHHHHHHHHHhcCCCccceeeecccc
Confidence 34568999999999999888886 4479999984 48877764 45666665433
|
|
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=91.72 E-value=0.19 Score=39.15 Aligned_cols=107 Identities=10% Similarity=0.177 Sum_probs=71.4
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCc----hhhccCCC------------CCCeeEEecCCc
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLP----HAVTDMPQ------------TDNLKYIEGDMF 68 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~----~~~~~a~~------------~~~~~~~~~d~~ 68 (180)
+.+.+. +++.+...|+|+|.|.....++.......-.|+++. ++....++ ...+..+++++.
T Consensus 184 i~dEl~--~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~ 261 (419)
T KOG3924|consen 184 IVDELK--LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFL 261 (419)
T ss_pred HHHHhc--cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccC
Confidence 445555 788888999999999999888776544344666652 22222221 456788888886
Q ss_pred ccC------CCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeC
Q 030291 69 QFI------PPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVID 119 (180)
Q Consensus 69 ~~~------~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~ 119 (180)
++. +..++|+++.+.. -++...+ +.++..-+++ |-+++-.....+
T Consensus 262 ~~~~v~eI~~eatvi~vNN~~F-dp~L~lr--~~eil~~ck~---gtrIiS~~~L~~ 312 (419)
T KOG3924|consen 262 DPKRVTEIQTEATVIFVNNVAF-DPELKLR--SKEILQKCKD---GTRIISSKPLVP 312 (419)
T ss_pred CHHHHHHHhhcceEEEEecccC-CHHHHHh--hHHHHhhCCC---cceEeccccccc
Confidence 632 3588999877642 2333334 6689999999 777777776655
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=91.68 E-value=2.6 Score=31.56 Aligned_cols=63 Identities=22% Similarity=0.163 Sum_probs=41.5
Q ss_pred eEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcc----c-CCCccEEEecc
Q 030291 18 SMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQ----F-IPPSDAFFFKT 81 (180)
Q Consensus 18 ~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~----~-~~~~D~v~~~~ 81 (180)
+++|+-||.|.++..+.+.. -..+.++|..+ +.+..+....-...+.|+.+ . .+.+|+++...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G-~~~v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG-FEIVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcC-CEEEEEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCC
Confidence 68999999999999888774 33467899854 44444432111255666644 1 34699988753
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=91.43 E-value=0.58 Score=30.63 Aligned_cols=79 Identities=14% Similarity=0.253 Sum_probs=42.4
Q ss_pred cCCCeEEEeCCcccH-HHHHHHHHCCCCeEEEeeCchhhccCCCCCCeeEEecCCcccCC----CccEEEeccccccCCh
Q 030291 14 QGLRSMVDVGGGTGA-FARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQFIP----PSDAFFFKTVFHFFDD 88 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~-~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~d~~~~~~----~~D~v~~~~~l~~~~~ 88 (180)
.+..+|+|||-|.=. .+..|.+. +..++++|..+. .+ ...+.++..|++++.. ..|+|.+... .
T Consensus 12 ~~~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~--~a--~~g~~~v~DDif~P~l~iY~~a~lIYSiRP-----P 80 (127)
T PF03686_consen 12 NNYGKIVEVGIGFNPEVAKKLKER--GFDVIATDINPR--KA--PEGVNFVVDDIFNPNLEIYEGADLIYSIRP-----P 80 (127)
T ss_dssp S-SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S--------STTEE---SSS--HHHHTTEEEEEEES-------
T ss_pred CCCCcEEEECcCCCHHHHHHHHHc--CCcEEEEECccc--cc--ccCcceeeecccCCCHHHhcCCcEEEEeCC-----C
Confidence 356699999999865 44555555 688999998543 22 3678889999987532 5889888543 2
Q ss_pred HHHHHHHHHHHHhhc
Q 030291 89 EDCLKLLKKCREAIA 103 (180)
Q Consensus 89 ~~~~~~l~~~~~~L~ 103 (180)
++....+-++++.+.
T Consensus 81 ~El~~~il~lA~~v~ 95 (127)
T PF03686_consen 81 PELQPPILELAKKVG 95 (127)
T ss_dssp TTSHHHHHHHHHHHT
T ss_pred hHHhHHHHHHHHHhC
Confidence 222344666666664
|
; PDB: 2K4M_A. |
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=91.43 E-value=2.7 Score=33.04 Aligned_cols=107 Identities=14% Similarity=0.247 Sum_probs=57.9
Q ss_pred ccccccccccCCCeEEEeCCcccH----HHHHHHHH---CCCCeEEEeeCc----h-hhccCCC---------CCCeeEE
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGA----FARIISEA---FPGIKCTVLDLP----H-AVTDMPQ---------TDNLKYI 63 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~----~~~~l~~~---~~~~~~~~~D~~----~-~~~~a~~---------~~~~~~~ 63 (180)
|++.+. -.....|+|+|.|.|. +...|+++ .|..++|+++.+ . .++...+ .-..+|.
T Consensus 102 IleA~~--g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~ 179 (374)
T PF03514_consen 102 ILEAFE--GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFH 179 (374)
T ss_pred HHHHhc--cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEE
Confidence 444444 3456688999999985 33344443 267899999982 2 3333321 2344444
Q ss_pred ec--CCcccC-------CCccEEE--eccccccCChH------HHHHHHHHHHHhhccCCCCcEEEEEEeee
Q 030291 64 EG--DMFQFI-------PPSDAFF--FKTVFHFFDDE------DCLKLLKKCREAIASNGERGKVLIIDIVI 118 (180)
Q Consensus 64 ~~--d~~~~~-------~~~D~v~--~~~~l~~~~~~------~~~~~l~~~~~~L~p~~~~G~~~~~~~~~ 118 (180)
.. +-.+.. ..-+.++ +...+||+.+. ....+|+.++ .|+| -.+++++...
T Consensus 180 ~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir-~L~P----~vvv~~E~ea 246 (374)
T PF03514_consen 180 PVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIR-SLNP----KVVVLVEQEA 246 (374)
T ss_pred ecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHH-hcCC----CEEEEEeecC
Confidence 42 211211 1222333 45557888632 1234665555 7899 6777777653
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=91.05 E-value=2.9 Score=26.98 Aligned_cols=79 Identities=15% Similarity=0.224 Sum_probs=52.2
Q ss_pred cCCCeEEEeCCcccH-HHHHHHHHCCCCeEEEeeCchhhccCCCCCCeeEEecCCcccC----CCccEEEeccccccCCh
Q 030291 14 QGLRSMVDVGGGTGA-FARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQFI----PPSDAFFFKTVFHFFDD 88 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~-~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~d~~~~~----~~~D~v~~~~~l~~~~~ 88 (180)
...++|+|+|.|-=. .+..|++. ++.++++|+.+. .+ ...+.++..|++++. ...|+|.+... .
T Consensus 12 ~~~gkVvEVGiG~~~~VA~~L~e~--g~dv~atDI~~~--~a--~~g~~~v~DDitnP~~~iY~~A~lIYSiRp-----p 80 (129)
T COG1255 12 NARGKVVEVGIGFFLDVAKRLAER--GFDVLATDINEK--TA--PEGLRFVVDDITNPNISIYEGADLIYSIRP-----P 80 (129)
T ss_pred hcCCcEEEEccchHHHHHHHHHHc--CCcEEEEecccc--cC--cccceEEEccCCCccHHHhhCccceeecCC-----C
Confidence 455699999998854 45555555 577999998553 23 367889999997643 25888887433 3
Q ss_pred HHHHHHHHHHHHhhc
Q 030291 89 EDCLKLLKKCREAIA 103 (180)
Q Consensus 89 ~~~~~~l~~~~~~L~ 103 (180)
++....+-++++.++
T Consensus 81 pEl~~~ildva~aVg 95 (129)
T COG1255 81 PELQSAILDVAKAVG 95 (129)
T ss_pred HHHHHHHHHHHHhhC
Confidence 443355556666654
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=90.65 E-value=3.1 Score=31.86 Aligned_cols=91 Identities=15% Similarity=0.043 Sum_probs=55.9
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcc-cCCCccEEEeccccccCChH
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQ-FIPPSDAFFFKTVFHFFDDE 89 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~-~~~~~D~v~~~~~l~~~~~~ 89 (180)
.+++++||=.|+|. |..+..+++.. ++++++++.++ ..+.+++..--.++ +..+ ....+|+++..... .
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~~~Ga~~vi--~~~~~~~~~~d~~i~~~~~-----~ 234 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLALALGAASAG--GAYDTPPEPLDAAILFAPA-----G 234 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHhCCceec--cccccCcccceEEEECCCc-----H
Confidence 56788999888654 55666666765 67888888744 56666552211111 1111 12247876543221 1
Q ss_pred HHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 90 DCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 90 ~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
..+....++|++ +|.+++....
T Consensus 235 ---~~~~~~~~~l~~---~G~~v~~G~~ 256 (329)
T TIGR02822 235 ---GLVPPALEALDR---GGVLAVAGIH 256 (329)
T ss_pred ---HHHHHHHHhhCC---CcEEEEEecc
Confidence 357888899999 9999887753
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=90.40 E-value=6.3 Score=29.83 Aligned_cols=86 Identities=16% Similarity=0.126 Sum_probs=53.4
Q ss_pred CCCeEEEeCCcc-cHHHHHHHHHCCCCe-EEEeeCch-hhccCCCCCCeeEEecCCcc-cCCCccEEEeccccccCChHH
Q 030291 15 GLRSMVDVGGGT-GAFARIISEAFPGIK-CTVLDLPH-AVTDMPQTDNLKYIEGDMFQ-FIPPSDAFFFKTVFHFFDDED 90 (180)
Q Consensus 15 ~~~~iLdiG~G~-G~~~~~l~~~~~~~~-~~~~D~~~-~~~~a~~~~~~~~~~~d~~~-~~~~~D~v~~~~~l~~~~~~~ 90 (180)
.+.++|=+|+|. |.++..+++.. +++ +.++|..+ .++.+.... ..|..+ ....+|+|+-... .+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~-G~~~v~~~~~~~~rl~~a~~~~-----~i~~~~~~~~g~Dvvid~~G-----~~- 211 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAA-GGSPPAVWETNPRRRDGATGYE-----VLDPEKDPRRDYRAIYDASG-----DP- 211 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHhhhhcc-----ccChhhccCCCCCEEEECCC-----CH-
Confidence 356788888765 77777788776 554 66677643 555544321 112211 1225888876432 22
Q ss_pred HHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 91 CLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 91 ~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
..+..+.+.+++ +|.+++....
T Consensus 212 --~~~~~~~~~l~~---~G~iv~~G~~ 233 (308)
T TIGR01202 212 --SLIDTLVRRLAK---GGEIVLAGFY 233 (308)
T ss_pred --HHHHHHHHhhhc---CcEEEEEeec
Confidence 457888899999 9999987653
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=90.37 E-value=0.96 Score=32.58 Aligned_cols=97 Identities=12% Similarity=0.164 Sum_probs=55.6
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHC--CCCeEEEeeCch-hhccCCC----------------------------------
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAF--PGIKCTVLDLPH-AVTDMPQ---------------------------------- 56 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~--~~~~~~~~D~~~-~~~~a~~---------------------------------- 56 (180)
..+-++.|-.||+|.+.--+.-.. .-..+++.|+.+ +++.|++
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~ 129 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE 129 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 457789999999999766554333 234689999954 8877752
Q ss_pred --------------CCCeeEEecCCcccC-------C-CccEEEecc---ccccCC----hHHHHHHHHHHHHhhccCCC
Q 030291 57 --------------TDNLKYIEGDMFQFI-------P-PSDAFFFKT---VFHFFD----DEDCLKLLKKCREAIASNGE 107 (180)
Q Consensus 57 --------------~~~~~~~~~d~~~~~-------~-~~D~v~~~~---~l~~~~----~~~~~~~l~~~~~~L~p~~~ 107 (180)
.......+.|++++. + ..|+|+.-- -+..|. .....++|..+.++|.+
T Consensus 130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~--- 206 (246)
T PF11599_consen 130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPE--- 206 (246)
T ss_dssp HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-T---
T ss_pred HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCC---
Confidence 123567788887621 2 379988721 122332 34466899999999954
Q ss_pred CcEEEE
Q 030291 108 RGKVLI 113 (180)
Q Consensus 108 ~G~~~~ 113 (180)
++.+.+
T Consensus 207 ~sVV~v 212 (246)
T PF11599_consen 207 RSVVAV 212 (246)
T ss_dssp T-EEEE
T ss_pred CcEEEE
Confidence 455555
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.17 E-value=1.5 Score=32.63 Aligned_cols=85 Identities=14% Similarity=0.203 Sum_probs=64.1
Q ss_pred cccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCCCCCeeEEecCCcccCC---CccEEEeccccccCCh
Q 030291 12 IFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQFIP---PSDAFFFKTVFHFFDD 88 (180)
Q Consensus 12 ~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~d~~~~~~---~~D~v~~~~~l~~~~~ 88 (180)
.+.++...+|+|+..|.++..|.++ +..++++|...|.+..-..+.++-...|-+...| +.|..+|-.+ +.
T Consensus 208 rL~~~M~avDLGAcPGGWTyqLVkr--~m~V~aVDng~ma~sL~dtg~v~h~r~DGfk~~P~r~~idWmVCDmV----Ek 281 (358)
T COG2933 208 RLAPGMWAVDLGACPGGWTYQLVKR--NMRVYAVDNGPMAQSLMDTGQVTHLREDGFKFRPTRSNIDWMVCDMV----EK 281 (358)
T ss_pred hhcCCceeeecccCCCccchhhhhc--ceEEEEeccchhhhhhhcccceeeeeccCcccccCCCCCceEEeehh----cC
Confidence 4577889999999999999999988 7889999987776666667778877777766444 4888887555 33
Q ss_pred HHHHHHHHHHHHhhcc
Q 030291 89 EDCLKLLKKCREAIAS 104 (180)
Q Consensus 89 ~~~~~~l~~~~~~L~p 104 (180)
+. .+-..+..+|..
T Consensus 282 P~--rv~~li~~Wl~n 295 (358)
T COG2933 282 PA--RVAALIAKWLVN 295 (358)
T ss_pred cH--HHHHHHHHHHHc
Confidence 44 445666777775
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=90.10 E-value=0.63 Score=34.49 Aligned_cols=70 Identities=10% Similarity=0.085 Sum_probs=42.8
Q ss_pred HHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcccCCCccEEEeccccccCChHHHHHHHHHHHHhhcc
Q 030291 29 FARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIAS 104 (180)
Q Consensus 29 ~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p 104 (180)
+++.|.+..+..++++.|.++ .+..+.+.+-+.-...+ .+....+|+|+..- |-....++++++...+++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~Dlvvlav-----P~~~~~~~l~~~~~~~~~ 71 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLAV-----PVSAIEDVLEEIAPYLKP 71 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE-S------HHHHHHHHHHHHCGS-T
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEcC-----CHHHHHHHHHHhhhhcCC
Confidence 466788888789999999955 77776543333333332 23445689988743 344455777777777777
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.07 E-value=1.7 Score=32.66 Aligned_cols=88 Identities=16% Similarity=0.113 Sum_probs=54.7
Q ss_pred CeEEEeCCcc--cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCC-cccCCCccEEEeccccccCChHHHH
Q 030291 17 RSMVDVGGGT--GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDM-FQFIPPSDAFFFKTVFHFFDDEDCL 92 (180)
Q Consensus 17 ~~iLdiG~G~--G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~-~~~~~~~D~v~~~~~l~~~~~~~~~ 92 (180)
.+|+=+|.|. |.+++.+.+......+++.|.+. ....+....-+.-...+. .......|+|+.+-- -....
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavP-----i~~~~ 78 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVP-----IEATE 78 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEecc-----HHHHH
Confidence 4566666665 67888888887777788998855 455554322221112222 234556899988443 33444
Q ss_pred HHHHHHHHhhccCCCCcEEEE
Q 030291 93 KLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 93 ~~l~~~~~~L~p~~~~G~~~~ 113 (180)
++++++...|++ |.++.
T Consensus 79 ~~l~~l~~~l~~----g~iv~ 95 (279)
T COG0287 79 EVLKELAPHLKK----GAIVT 95 (279)
T ss_pred HHHHHhcccCCC----CCEEE
Confidence 788888888888 55554
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=89.52 E-value=3.2 Score=26.73 Aligned_cols=82 Identities=12% Similarity=0.116 Sum_probs=54.4
Q ss_pred cccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCc---c----cCC--CccEEEeccccccCChHHHHHH
Q 030291 25 GTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMF---Q----FIP--PSDAFFFKTVFHFFDDEDCLKL 94 (180)
Q Consensus 25 G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~---~----~~~--~~D~v~~~~~l~~~~~~~~~~~ 94 (180)
|.|..+..+++... .+++++|.++ ..+.+++..--.+...+-. + ..+ .+|+|+-.-. .. ..
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g-----~~---~~ 71 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG-----SG---DT 71 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSS-----SH---HH
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecC-----cH---HH
Confidence 45788888888874 9999999965 6666665332222222111 1 122 5898876433 22 56
Q ss_pred HHHHHHhhccCCCCcEEEEEEeee
Q 030291 95 LKKCREAIASNGERGKVLIIDIVI 118 (180)
Q Consensus 95 l~~~~~~L~p~~~~G~~~~~~~~~ 118 (180)
++...+++++ +|.+++.....
T Consensus 72 ~~~~~~~l~~---~G~~v~vg~~~ 92 (130)
T PF00107_consen 72 LQEAIKLLRP---GGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHEEE---EEEEEEESSTS
T ss_pred HHHHHHHhcc---CCEEEEEEccC
Confidence 9999999999 89999987654
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.74 E-value=6.1 Score=30.36 Aligned_cols=91 Identities=13% Similarity=0.170 Sum_probs=55.4
Q ss_pred cCCCeEEEeCCcc-cHHHHHHHHHCCCC-eEEEeeCch-hhccCCCCCCeeEEe---cCCcc---cCCCccEEEeccccc
Q 030291 14 QGLRSMVDVGGGT-GAFARIISEAFPGI-KCTVLDLPH-AVTDMPQTDNLKYIE---GDMFQ---FIPPSDAFFFKTVFH 84 (180)
Q Consensus 14 ~~~~~iLdiG~G~-G~~~~~l~~~~~~~-~~~~~D~~~-~~~~a~~~~~~~~~~---~d~~~---~~~~~D~v~~~~~l~ 84 (180)
.++++||=+|+|. |..+..+++.. ++ +++++|.++ .++.+++..-..++. .++.+ ..+.+|+|+-...
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~-G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G-- 244 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTL-GAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG-- 244 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC--
Confidence 3567888888765 66777777776 55 688888754 666665522111111 11111 1124888775322
Q ss_pred cCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 85 FFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 85 ~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
.+ ..+....+++++ +|.+++...
T Consensus 245 ---~~---~~~~~~~~~l~~---~G~iv~~G~ 267 (343)
T PRK09880 245 ---HP---SSINTCLEVTRA---KGVMVQVGM 267 (343)
T ss_pred ---CH---HHHHHHHHHhhc---CCEEEEEcc
Confidence 22 457778889999 999998764
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=88.69 E-value=9.4 Score=29.44 Aligned_cols=92 Identities=18% Similarity=0.245 Sum_probs=55.5
Q ss_pred cCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeC---ch-hhccCCCCCCeeEEe---cCCc--ccCCCccEEEecccc
Q 030291 14 QGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDL---PH-AVTDMPQTDNLKYIE---GDMF--QFIPPSDAFFFKTVF 83 (180)
Q Consensus 14 ~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~---~~-~~~~a~~~~~~~~~~---~d~~--~~~~~~D~v~~~~~l 83 (180)
.++.+||=+|+|. |.++..+++.. ++++++++. ++ ..+.+++.. .+.+. .+.. .....+|+|+-...
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~~~G-a~~v~~~~~~~~~~~~~~~~d~vid~~g- 247 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVEELG-ATYVNSSKTPVAEVKLVGEFDLIIEATG- 247 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHcC-CEEecCCccchhhhhhcCCCCEEEECcC-
Confidence 4677888888765 66777777776 668888875 22 444444321 12211 1110 01234888776432
Q ss_pred ccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeee
Q 030291 84 HFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVI 118 (180)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~ 118 (180)
.. ..+.+..+.|++ +|.+++.....
T Consensus 248 ----~~---~~~~~~~~~l~~---~G~~v~~G~~~ 272 (355)
T cd08230 248 ----VP---PLAFEALPALAP---NGVVILFGVPG 272 (355)
T ss_pred ----CH---HHHHHHHHHccC---CcEEEEEecCC
Confidence 22 457888899999 89988876543
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=88.59 E-value=0.31 Score=36.63 Aligned_cols=41 Identities=10% Similarity=0.023 Sum_probs=33.6
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ 56 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~ 56 (180)
.+++.|||-=+|+|..+.+..+. +-+++|+|+++ ..+.+++
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~ 248 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGLR 248 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHHH
Confidence 67899999999999999887777 66799999954 6666653
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=88.23 E-value=2.2 Score=35.00 Aligned_cols=93 Identities=10% Similarity=0.123 Sum_probs=58.7
Q ss_pred CCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcc-----------------------
Q 030291 15 GLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQ----------------------- 69 (180)
Q Consensus 15 ~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~----------------------- 69 (180)
++.+++=+|+|. |..+..+++.. ++.++++|... .++.+++. ..+++..|..+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~l-Ga~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~ 240 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQSM-GAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL 240 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc-CCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence 468999999998 56666666665 67799999844 66666542 22222222100
Q ss_pred ---cCCCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 70 ---FIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 70 ---~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
....+|+|+....+.--+.+. -+.++..+.+|| |+.++-.
T Consensus 241 ~~e~~~~~DIVI~TalipG~~aP~--Lit~emv~~MKp---GsvIVDl 283 (511)
T TIGR00561 241 FAAQAKEVDIIITTALIPGKPAPK--LITEEMVDSMKA---GSVIVDL 283 (511)
T ss_pred HHHHhCCCCEEEECcccCCCCCCe--eehHHHHhhCCC---CCEEEEe
Confidence 123699998766554433443 347788899999 6665433
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.11 E-value=1.9 Score=34.81 Aligned_cols=102 Identities=16% Similarity=0.166 Sum_probs=67.4
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeC-chhhccCCC------CCCeeEEecCCcc----------cCCCcc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDL-PHAVTDMPQ------TDNLKYIEGDMFQ----------FIPPSD 75 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~------~~~~~~~~~d~~~----------~~~~~D 75 (180)
......+|-+|-|.|.+...+....|..+++++++ +++++.+.+ ..+..+...|-.+ ....||
T Consensus 293 ~~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~d 372 (482)
T KOG2352|consen 293 LDTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPD 372 (482)
T ss_pred ccccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCc
Confidence 34567788888888999999998999999999999 669998875 1223333222222 122599
Q ss_pred EEEe------ccccccCCh-HHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 76 AFFF------KTVFHFFDD-EDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 76 ~v~~------~~~l~~~~~-~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
+++. ++.+.+-+. -....+|..++..|.| .|.+.+.-..
T Consensus 373 vl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p---~g~f~inlv~ 418 (482)
T KOG2352|consen 373 VLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPP---RGMFIINLVT 418 (482)
T ss_pred EEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCc---cceEEEEEec
Confidence 8885 122222221 2234788899999999 7777654433
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=87.94 E-value=4.3 Score=25.66 Aligned_cols=81 Identities=23% Similarity=0.310 Sum_probs=48.3
Q ss_pred CcccHHHHHHHHHC--CCCeEEEeeCch-hhccCCCCCCeeEEecCCccc-------CCCccEEEeccccccCChHHHHH
Q 030291 24 GGTGAFARIISEAF--PGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQF-------IPPSDAFFFKTVFHFFDDEDCLK 93 (180)
Q Consensus 24 ~G~G~~~~~l~~~~--~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~-------~~~~D~v~~~~~l~~~~~~~~~~ 93 (180)
||.|.++..+++.. .+..++.+|..+ ..+.++.. .+.++.+|..++ ..++|.+++..- ++....
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~-----~d~~n~ 77 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE-GVEVIYGDATDPEVLERAGIEKADAVVILTD-----DDEENL 77 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-TSEEEES-TTSHHHHHHTTGGCESEEEEESS-----SHHHHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-ccccccccchhhhHHhhcCccccCEEEEccC-----CHHHHH
Confidence 56666776665542 245799999854 65555533 378899999652 236887777332 334334
Q ss_pred HHHHHHHhhccCCCCcEEEE
Q 030291 94 LLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 94 ~l~~~~~~L~p~~~~G~~~~ 113 (180)
.+....+.+.| ...++.
T Consensus 78 ~~~~~~r~~~~---~~~ii~ 94 (116)
T PF02254_consen 78 LIALLARELNP---DIRIIA 94 (116)
T ss_dssp HHHHHHHHHTT---TSEEEE
T ss_pred HHHHHHHHHCC---CCeEEE
Confidence 45566677777 555555
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=87.67 E-value=6.3 Score=29.84 Aligned_cols=91 Identities=13% Similarity=0.188 Sum_probs=55.7
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCC---c------ccCCCccEEEecc
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDM---F------QFIPPSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~---~------~~~~~~D~v~~~~ 81 (180)
+..+.+||-.|+|. |..+..+++.. +.+++.++.++ ..+.+++.. ++....+- . .....+|+++...
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~ 240 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKELG-ADEVLNSLDDSPKDKKAAGLGGGFDVIFDFV 240 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhC-CCEEEcCCCcCHHHHHHHhcCCCceEEEECC
Confidence 45677888888764 77777777776 67788888744 555543311 11111111 0 0122589887532
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
.. . ..++.+.+.|++ +|.++....
T Consensus 241 g~------~--~~~~~~~~~l~~---~G~~v~~g~ 264 (338)
T cd08254 241 GT------Q--PTFEDAQKAVKP---GGRIVVVGL 264 (338)
T ss_pred CC------H--HHHHHHHHHhhc---CCEEEEECC
Confidence 21 1 458888999999 898887653
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=87.06 E-value=1.9 Score=35.29 Aligned_cols=88 Identities=18% Similarity=0.289 Sum_probs=61.0
Q ss_pred CCeEEEeCCcccHHHHHHHHH----CCCCeEEEeeC-chhhccCC--C----CCCeeEEecCCcc-cCC--CccEEEecc
Q 030291 16 LRSMVDVGGGTGAFARIISEA----FPGIKCTVLDL-PHAVTDMP--Q----TDNLKYIEGDMFQ-FIP--PSDAFFFKT 81 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~----~~~~~~~~~D~-~~~~~~a~--~----~~~~~~~~~d~~~-~~~--~~D~v~~~~ 81 (180)
...|+-+|+|-|-+..+.++. ....++++++- |.++...+ + ..+++++-.|+.. ..| ..|++++ .
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VS-E 446 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVS-E 446 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHH-H
Confidence 557789999999887765543 34678899997 44333222 2 6899999999966 233 4888765 3
Q ss_pred ccccCCh-HHHHHHHHHHHHhhcc
Q 030291 82 VFHFFDD-EDCLKLLKKCREAIAS 104 (180)
Q Consensus 82 ~l~~~~~-~~~~~~l~~~~~~L~p 104 (180)
.|..+.| +..++.|.-+.+.|||
T Consensus 447 LLGSFGDNELSPECLDG~q~fLkp 470 (649)
T KOG0822|consen 447 LLGSFGDNELSPECLDGAQKFLKP 470 (649)
T ss_pred hhccccCccCCHHHHHHHHhhcCC
Confidence 3344444 3355889999999999
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=86.96 E-value=4.2 Score=32.46 Aligned_cols=87 Identities=15% Similarity=0.143 Sum_probs=55.0
Q ss_pred cCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcccCCCccEEEeccccccCChHHH
Q 030291 14 QGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDDEDC 91 (180)
Q Consensus 14 ~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~~~~ 91 (180)
..+++|+=+|+|. |......++.. +++++++|.++ ....++..+ .+.. +..+.....|+|+..- ...
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~~R~~~A~~~G-~~~~--~~~e~v~~aDVVI~at-----G~~-- 268 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDPICALQAAMEG-YEVM--TMEEAVKEGDIFVTTT-----GNK-- 268 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECChhhHHHHHhcC-CEEc--cHHHHHcCCCEEEECC-----CCH--
Confidence 4678999999998 66666666665 77899999854 555555422 2221 1212334689988642 222
Q ss_pred HHHHHH-HHHhhccCCCCcEEEEEE
Q 030291 92 LKLLKK-CREAIASNGERGKVLIID 115 (180)
Q Consensus 92 ~~~l~~-~~~~L~p~~~~G~~~~~~ 115 (180)
.++.. ..+.+++ ||.++.+.
T Consensus 269 -~~i~~~~l~~mk~---GgilvnvG 289 (413)
T cd00401 269 -DIITGEHFEQMKD---GAIVCNIG 289 (413)
T ss_pred -HHHHHHHHhcCCC---CcEEEEeC
Confidence 34554 4889999 77777765
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=86.67 E-value=3.5 Score=30.84 Aligned_cols=79 Identities=11% Similarity=0.072 Sum_probs=46.4
Q ss_pred eEEEeCCcc--cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcccCCCccEEEeccccccCChHHHHHH
Q 030291 18 SMVDVGGGT--GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCLKL 94 (180)
Q Consensus 18 ~iLdiG~G~--G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~~~~~~~ 94 (180)
+|.=||+|. |.++..+.+. +.+++++|.+. .++.+.+...+.....+. +.....|+|+.. ++.....++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~-~~~~~aDlVila-----vp~~~~~~~ 73 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIERGLVDEASTDL-SLLKDCDLVILA-----LPIGLLLPP 73 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHCCCcccccCCH-hHhcCCCEEEEc-----CCHHHHHHH
Confidence 355567765 3455555555 56799999854 555554332222222222 223468988874 344555577
Q ss_pred HHHHHHhhcc
Q 030291 95 LKKCREAIAS 104 (180)
Q Consensus 95 l~~~~~~L~p 104 (180)
++++...+++
T Consensus 74 ~~~l~~~l~~ 83 (279)
T PRK07417 74 SEQLIPALPP 83 (279)
T ss_pred HHHHHHhCCC
Confidence 8888888887
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.62 E-value=3.5 Score=31.59 Aligned_cols=91 Identities=14% Similarity=0.190 Sum_probs=61.1
Q ss_pred CCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCC--CCCeeEEecCCcc---cCCCccEEEeccccccCCh
Q 030291 16 LRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQ--TDNLKYIEGDMFQ---FIPPSDAFFFKTVFHFFDD 88 (180)
Q Consensus 16 ~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~--~~~~~~~~~d~~~---~~~~~D~v~~~~~l~~~~~ 88 (180)
+.+|.=||.|. |..+..++--. ++.++.+|++. .+.+... ..++..+-.+... ....+|++|..-.+---..
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgaka 246 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKA 246 (371)
T ss_pred CccEEEECCccccchHHHHHhcc-CCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCC
Confidence 35677788887 77777666555 77899999964 5555544 5667776666533 3457999887555544455
Q ss_pred HHHHHHHHHHHHhhccCCCCcEEE
Q 030291 89 EDCLKLLKKCREAIASNGERGKVL 112 (180)
Q Consensus 89 ~~~~~~l~~~~~~L~p~~~~G~~~ 112 (180)
+. -+.+++...+|| |+.++
T Consensus 247 Pk--Lvt~e~vk~Mkp---GsViv 265 (371)
T COG0686 247 PK--LVTREMVKQMKP---GSVIV 265 (371)
T ss_pred ce--ehhHHHHHhcCC---CcEEE
Confidence 65 347888999999 44444
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=86.49 E-value=11 Score=27.95 Aligned_cols=92 Identities=16% Similarity=0.096 Sum_probs=54.3
Q ss_pred cCCCeEEEeCCcc-cHHHHHHHHHCCCCe-EEEeeCch-hhccCCCCCCeeEEe-cCCcc------cCCCccEEEecccc
Q 030291 14 QGLRSMVDVGGGT-GAFARIISEAFPGIK-CTVLDLPH-AVTDMPQTDNLKYIE-GDMFQ------FIPPSDAFFFKTVF 83 (180)
Q Consensus 14 ~~~~~iLdiG~G~-G~~~~~l~~~~~~~~-~~~~D~~~-~~~~a~~~~~~~~~~-~d~~~------~~~~~D~v~~~~~l 83 (180)
.++++||=+|+|. |..+..+++.. +++ ++.+|.++ ..+.+++..--.++. .+..+ ....+|+++-...
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~-G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G- 196 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAA-GAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSG- 196 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCC-
Confidence 3567888888765 66666677766 554 88888743 555554421111111 11101 1124888775322
Q ss_pred ccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 84 HFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
.. ..+....+.+++ +|.+++....
T Consensus 197 ----~~---~~~~~~~~~l~~---~G~iv~~G~~ 220 (280)
T TIGR03366 197 ----AT---AAVRACLESLDV---GGTAVLAGSV 220 (280)
T ss_pred ----Ch---HHHHHHHHHhcC---CCEEEEeccC
Confidence 12 457888899999 8999987754
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2 | Back alignment and domain information |
|---|
Probab=86.34 E-value=6 Score=24.65 Aligned_cols=80 Identities=14% Similarity=0.137 Sum_probs=45.7
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEee--cCCcccCHHHHHHHHHH
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFN--VGGKERTEQEWGSLFVN 158 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~ 158 (180)
.+|-|.+.++..++|+.+.+..+ |.++++- .|... .+.-.++.-.++-... ..-.....+++.+.+++
T Consensus 3 DvLIHYp~~d~~~~l~~La~~t~-----~~~ifTf--AP~T~---~L~~m~~iG~lFP~~dRsp~i~~~~e~~l~~~l~~ 72 (97)
T PF07109_consen 3 DVLIHYPAEDAAQMLAHLASRTR-----GSLIFTF--APRTP---LLALMHAIGKLFPRPDRSPRIYPHREEDLRRALAA 72 (97)
T ss_pred ceEeccCHHHHHHHHHHHHHhcc-----CcEEEEE--CCCCH---HHHHHHHHhccCCCCCCCCcEEEeCHHHHHHHHHh
Confidence 45567788888888999988875 5555532 11111 1112222221111100 01123578899999999
Q ss_pred cCCeEEEEeecC
Q 030291 159 AGFTHYKIAPIF 170 (180)
Q Consensus 159 aGf~~~~~~~~~ 170 (180)
+||++.+.....
T Consensus 73 ~g~~~~r~~ris 84 (97)
T PF07109_consen 73 AGWRIGRTERIS 84 (97)
T ss_pred CCCeeeeccccc
Confidence 999998776553
|
1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process |
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=86.01 E-value=6 Score=30.02 Aligned_cols=84 Identities=10% Similarity=0.004 Sum_probs=46.7
Q ss_pred CCeEEEeCCcc-c-HHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcccCCCccEEEeccccccCChHHHH
Q 030291 16 LRSMVDVGGGT-G-AFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCL 92 (180)
Q Consensus 16 ~~~iLdiG~G~-G-~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~~~~~ 92 (180)
..+|.=||+|. | .++..+.+.....+++++|.++ ..+.+++..-......+..+.....|+|+..- +.....
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiav-----p~~~~~ 80 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCV-----PVGASG 80 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECC-----CHHHHH
Confidence 35688888876 3 3444454443224789999854 55544432211111222222345689888744 333334
Q ss_pred HHHHHHHHhhcc
Q 030291 93 KLLKKCREAIAS 104 (180)
Q Consensus 93 ~~l~~~~~~L~p 104 (180)
.+++++...+++
T Consensus 81 ~v~~~l~~~l~~ 92 (307)
T PRK07502 81 AVAAEIAPHLKP 92 (307)
T ss_pred HHHHHHHhhCCC
Confidence 667888888888
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=85.97 E-value=9.2 Score=26.38 Aligned_cols=119 Identities=15% Similarity=0.166 Sum_probs=68.5
Q ss_pred eCCcccHHHHHHHHHCC-CCeEE--EeeCch-hhccCCC---------CCCeeEE-ecCCcc---cC----CCccEEEec
Q 030291 22 VGGGTGAFARIISEAFP-GIKCT--VLDLPH-AVTDMPQ---------TDNLKYI-EGDMFQ---FI----PPSDAFFFK 80 (180)
Q Consensus 22 iG~G~G~~~~~l~~~~~-~~~~~--~~D~~~-~~~~a~~---------~~~~~~~-~~d~~~---~~----~~~D~v~~~ 80 (180)
||=|.=.++..|++... ...++ ..|..+ ...+... ..++++. ..|+.. .. ..||.|+.+
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 45555567788888865 44454 444422 3433331 2333332 344432 11 259999987
Q ss_pred ccccc-----------CChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCH
Q 030291 81 TVFHF-----------FDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTE 149 (180)
Q Consensus 81 ~~l~~-----------~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
+---- ....-...+++.+.++|++ +|.+.++-..... ++.
T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~---~G~IhVTl~~~~p--------------------------y~~ 133 (166)
T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKP---DGEIHVTLKDGQP--------------------------YDS 133 (166)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCCCC--------------------------Ccc
Confidence 65221 0012355788999999999 8998886432111 111
Q ss_pred HHHHHHHHHcCCeEEEEeec
Q 030291 150 QEWGSLFVNAGFTHYKIAPI 169 (180)
Q Consensus 150 ~~~~~~l~~aGf~~~~~~~~ 169 (180)
=.+.++.+++||...+...+
T Consensus 134 W~i~~lA~~~gl~l~~~~~F 153 (166)
T PF10354_consen 134 WNIEELAAEAGLVLVRKVPF 153 (166)
T ss_pred ccHHHHHHhcCCEEEEEecC
Confidence 22457778889988877665
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=85.94 E-value=7.7 Score=30.35 Aligned_cols=109 Identities=12% Similarity=0.093 Sum_probs=65.4
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCC----eEEEeeCch----hhccCCC---CCCeeEEecCCcc-------cC---
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGI----KCTVLDLPH----AVTDMPQ---TDNLKYIEGDMFQ-------FI--- 71 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~----~~~~~D~~~----~~~~a~~---~~~~~~~~~d~~~-------~~--- 71 (180)
.+++.+|||..+..|.-+..+++..... .+++=|... ++....+ ..++.+...|... ..
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~ 232 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDK 232 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchh
Confidence 6789999999999999998888875322 466667622 2222211 2233333333211 01
Q ss_pred C--CccEEEec------cccccCCh---------------HHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCc
Q 030291 72 P--PSDAFFFK------TVFHFFDD---------------EDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDD 124 (180)
Q Consensus 72 ~--~~D~v~~~------~~l~~~~~---------------~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~ 124 (180)
. .||-|++- +++.+-++ ..+..+|.+..++|++ ||.++-+.......+.+
T Consensus 233 ~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~---GG~lVYSTCSLnpieNE 305 (375)
T KOG2198|consen 233 EQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKV---GGRLVYSTCSLNPIENE 305 (375)
T ss_pred hhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcC---CCEEEEeccCCCchhhH
Confidence 1 37877751 12222211 2244789999999999 99999988766554443
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=85.82 E-value=11 Score=27.24 Aligned_cols=92 Identities=14% Similarity=0.157 Sum_probs=54.6
Q ss_pred cCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEec---CCcc-----cCCCccEEEecccc
Q 030291 14 QGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEG---DMFQ-----FIPPSDAFFFKTVF 83 (180)
Q Consensus 14 ~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~---d~~~-----~~~~~D~v~~~~~l 83 (180)
.++.+||-.|+|+ |..+..+++.. +.++++++.++ ..+.+++.....++.. +... ....+|+++....
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~- 210 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVG- 210 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCC-
Confidence 5678999999886 66666666665 57888888753 4444332111111111 1100 1235899886432
Q ss_pred ccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 84 HFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
.. ..+..+.+.+++ +|.++.....
T Consensus 211 ----~~---~~~~~~~~~l~~---~G~~v~~~~~ 234 (271)
T cd05188 211 ----GP---ETLAQALRLLRP---GGRIVVVGGT 234 (271)
T ss_pred ----CH---HHHHHHHHhccc---CCEEEEEccC
Confidence 21 346777888899 8988876543
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.14 E-value=8.1 Score=30.59 Aligned_cols=66 Identities=12% Similarity=0.128 Sum_probs=43.9
Q ss_pred CeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCC--CCCeeEEecCCccc------CCCccEEEeccc
Q 030291 17 RSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQ--TDNLKYIEGDMFQF------IPPSDAFFFKTV 82 (180)
Q Consensus 17 ~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~--~~~~~~~~~d~~~~------~~~~D~v~~~~~ 82 (180)
.+||=||||. |......+.+....+++..|-+. ...++.. ..+++..+.|+.+. +..+|+|+....
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p 77 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAP 77 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCC
Confidence 4689999966 55444443333347899999863 5555543 45899999999663 236899887543
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=83.10 E-value=11 Score=28.78 Aligned_cols=122 Identities=13% Similarity=0.133 Sum_probs=61.1
Q ss_pred CCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch--hhccCCCCCCeeEEe-cCCcccCCCccEEEeccccccCChHH
Q 030291 15 GLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH--AVTDMPQTDNLKYIE-GDMFQFIPPSDAFFFKTVFHFFDDED 90 (180)
Q Consensus 15 ~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~--~~~~a~~~~~~~~~~-~d~~~~~~~~D~v~~~~~l~~~~~~~ 90 (180)
.+.+|+=+|+|. |......+.......++.++.+. ..+.+++.+. .... .+..+....+|+|+..-.-.+.
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~-~~~~~~~~~~~l~~aDvVi~at~~~~~---- 251 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGG-NAVPLDELLELLNEADVVISATGAPHY---- 251 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCC-eEEeHHHHHHHHhcCCEEEECCCCCch----
Confidence 578899999876 54444444433235688888743 2333333221 2222 1222234569999986543322
Q ss_pred HHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHH
Q 030291 91 CLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVN 158 (180)
Q Consensus 91 ~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 158 (180)
...++...+.. + ++..++.|...|..-... .. ...+...++.++|.+..++
T Consensus 252 -~~~~~~~~~~~-~---~~~~~viDlavPrdi~~~-------v~-----~l~~v~l~~vDdl~~~~~~ 302 (311)
T cd05213 252 -AKIVERAMKKR-S---GKPRLIVDLAVPRDIEPE-------VG-----ELEGVRLYTIDDLEEVVEE 302 (311)
T ss_pred -HHHHHHHHhhC-C---CCCeEEEEeCCCCCCchh-------hc-----cCCCcEEEEHHHhHHHHHH
Confidence 12344433333 2 355666676654332110 00 1122345677888776654
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=83.06 E-value=3.8 Score=33.00 Aligned_cols=99 Identities=11% Similarity=0.024 Sum_probs=54.9
Q ss_pred CCeEEEeCCcccHHH--HHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcc---cC---CCccEEEe
Q 030291 16 LRSMVDVGGGTGAFA--RIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQ---FI---PPSDAFFF 79 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~--~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~---~~---~~~D~v~~ 79 (180)
++.+.|+|.|.|.-. ...+-....-.++.||.+. |...... .........-+.. +. ..||++++
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~ 280 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVIC 280 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEEe
Confidence 456777887766433 2222222244688999865 5554432 1111111111211 11 14999999
Q ss_pred ccccccCChHHHH-HHHHHHH-HhhccCCCCcEEEEEEee
Q 030291 80 KTVFHFFDDEDCL-KLLKKCR-EAIASNGERGKVLIIDIV 117 (180)
Q Consensus 80 ~~~l~~~~~~~~~-~~l~~~~-~~L~p~~~~G~~~~~~~~ 117 (180)
.+.++++.....+ ...+..+ +..++ |+.+++.+..
T Consensus 281 ah~l~~~~s~~~R~~v~~s~~r~~~r~---g~~lViIe~g 317 (491)
T KOG2539|consen 281 AHKLHELGSKFSRLDVPESLWRKTDRS---GYFLVIIEKG 317 (491)
T ss_pred eeeeeccCCchhhhhhhHHHHHhccCC---CceEEEEecC
Confidence 9999999875533 3344443 55666 7788887653
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=82.65 E-value=1.4 Score=32.04 Aligned_cols=40 Identities=13% Similarity=0.075 Sum_probs=32.1
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCC
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMP 55 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~ 55 (180)
.+++.|||-=||+|..+.+..+. +.+++++|+++ ..+.+.
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~y~~~~~ 202 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQYHRAGQ 202 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHHHHHHHH
Confidence 57889999999999999887777 66799999955 555443
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=82.44 E-value=5.8 Score=31.27 Aligned_cols=94 Identities=16% Similarity=0.138 Sum_probs=63.1
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCC-CCeEEEeeCch-hhccCCC-------CC-CeeEEecCCccc----CCCccEEEec
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFP-GIKCTVLDLPH-AVTDMPQ-------TD-NLKYIEGDMFQF----IPPSDAFFFK 80 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~~~~D~~~-~~~~a~~-------~~-~~~~~~~d~~~~----~~~~D~v~~~ 80 (180)
.+-++||.=+|+|.-+.+++.+.+ ..+++.-|+++ ..+.+++ .. ++++.+.|...- ...||+|=.
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDl- 127 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDL- 127 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEe-
Confidence 456899999999999999988843 45788999955 6666653 23 678888888442 235998765
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
.-+..+. .+|....+.++. ||.+.++.+.
T Consensus 128 ---DPfGSp~--pfldsA~~~v~~---gGll~vTaTD 156 (377)
T PF02005_consen 128 ---DPFGSPA--PFLDSALQAVKD---GGLLCVTATD 156 (377)
T ss_dssp -----SS--H--HHHHHHHHHEEE---EEEEEEEE--
T ss_pred ---CCCCCcc--HhHHHHHHHhhc---CCEEEEeccc
Confidence 3344455 889999999999 8888887654
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=82.34 E-value=16 Score=28.43 Aligned_cols=93 Identities=16% Similarity=0.109 Sum_probs=55.0
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCC-eEEEeeCch-hhccCCCCCCeeEEec---CCcc----c-CCCccEEEecc
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGI-KCTVLDLPH-AVTDMPQTDNLKYIEG---DMFQ----F-IPPSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~-~~~~~D~~~-~~~~a~~~~~~~~~~~---d~~~----~-~~~~D~v~~~~ 81 (180)
++++++||=.|+|. |..+..+++.. ++ .++++|.++ ..+.+++..-..++.. +..+ . ...+|+++-..
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~-G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~ 267 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAA-GASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMA 267 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECC
Confidence 55677888888765 66666677766 65 588888744 5555544221111111 1111 0 11488887532
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
. .. ..+....+.+++ +|.+++....
T Consensus 268 G-----~~---~~~~~~~~~l~~---~G~iv~~G~~ 292 (371)
T cd08281 268 G-----SV---PALETAYEITRR---GGTTVTAGLP 292 (371)
T ss_pred C-----Ch---HHHHHHHHHHhc---CCEEEEEccC
Confidence 1 11 447778889999 8998887643
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=82.09 E-value=7.1 Score=28.89 Aligned_cols=97 Identities=16% Similarity=0.324 Sum_probs=49.4
Q ss_pred cCCCeEEEeCCcccHHHHHHH---HHC--CCCeEEEeeC----ch-hhcc-----------CC---------------C-
Q 030291 14 QGLRSMVDVGGGTGAFARIIS---EAF--PGIKCTVLDL----PH-AVTD-----------MP---------------Q- 56 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~---~~~--~~~~~~~~D~----~~-~~~~-----------a~---------------~- 56 (180)
.-+..|+|.||-.|..+..++ +.+ ++-+++++|. |+ ..+. .. +
T Consensus 73 ~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~ 152 (248)
T PF05711_consen 73 DVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARY 152 (248)
T ss_dssp TS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCT
T ss_pred CCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHc
Confidence 446789999999997665543 322 3557888883 22 1100 00 0
Q ss_pred ---CCCeeEEecCCcccCCC---ccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 57 ---TDNLKYIEGDMFQFIPP---SDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 57 ---~~~~~~~~~d~~~~~~~---~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
..++.++.+.+.+.+|. -.+.++.-=........ ..|+.+...|.| ||.+++-|
T Consensus 153 gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlYesT~--~aLe~lyprl~~---GGiIi~DD 212 (248)
T PF05711_consen 153 GLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLYESTK--DALEFLYPRLSP---GGIIIFDD 212 (248)
T ss_dssp TTSSTTEEEEES-HHHHCCC-TT--EEEEEE---SHHHHH--HHHHHHGGGEEE---EEEEEESS
T ss_pred CCCcccEEEECCcchhhhccCCCccEEEEEEeccchHHHH--HHHHHHHhhcCC---CeEEEEeC
Confidence 25788888888554432 12222211111112333 779999999999 66666644
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=82.09 E-value=21 Score=27.55 Aligned_cols=93 Identities=15% Similarity=0.123 Sum_probs=55.5
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCC-eEEEeeCch-hhccCCCCCCeeEEe---cCCcc----cC--CCccEEEec
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGI-KCTVLDLPH-AVTDMPQTDNLKYIE---GDMFQ----FI--PPSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~-~~~~~D~~~-~~~~a~~~~~~~~~~---~d~~~----~~--~~~D~v~~~ 80 (180)
..++++||=.|+|. |..+..+++.. ++ +++++|.++ ..+.+++..--.++. .+..+ .. ..+|+++-.
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~-G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~ 252 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALA-GASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDA 252 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEEC
Confidence 46678898888765 66667777776 55 488888744 555554322111221 11111 11 248888753
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
. ..+ ..+....+.+++ +|.+++....
T Consensus 253 ~-----g~~---~~~~~~~~~~~~---~G~iv~~G~~ 278 (358)
T TIGR03451 253 V-----GRP---ETYKQAFYARDL---AGTVVLVGVP 278 (358)
T ss_pred C-----CCH---HHHHHHHHHhcc---CCEEEEECCC
Confidence 2 222 346777889999 8999887643
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=81.98 E-value=2.9 Score=27.62 Aligned_cols=40 Identities=13% Similarity=-0.056 Sum_probs=30.0
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCC
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMP 55 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~ 55 (180)
.+.+|+|||++-|..+..++... -..+++++..+ ..+..+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~G-AK~Vva~E~~~kl~k~~e 68 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRG-ASFVVQYEKEEKLRKKWE 68 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcC-ccEEEEeccCHHHHHHHH
Confidence 46789999999999999888774 23688999854 444443
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=81.13 E-value=16 Score=27.90 Aligned_cols=92 Identities=16% Similarity=0.171 Sum_probs=53.4
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCCe-EEEeeCch-hhccCCCCCCeeEEec---C---Ccc--cCCCccEEEecc
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGIK-CTVLDLPH-AVTDMPQTDNLKYIEG---D---MFQ--FIPPSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~-~~~~D~~~-~~~~a~~~~~~~~~~~---d---~~~--~~~~~D~v~~~~ 81 (180)
+.++.+||=+|+|. |..+..+++.. +++ +++++.++ ..+.+++..--.++.. + +.+ ....+|+++-..
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~-G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~ 239 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARAL-GAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECS 239 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECC
Confidence 45678888888754 55666667665 666 88888743 4555443211111111 1 001 112589887532
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
. .. ..+....+.|++ +|.+++...
T Consensus 240 g-----~~---~~~~~~~~~l~~---~G~~v~~g~ 263 (339)
T cd08239 240 G-----NT---AARRLALEAVRP---WGRLVLVGE 263 (339)
T ss_pred C-----CH---HHHHHHHHHhhc---CCEEEEEcC
Confidence 2 12 346677788999 899987664
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=80.98 E-value=11 Score=30.30 Aligned_cols=103 Identities=19% Similarity=0.310 Sum_probs=64.2
Q ss_pred cCCCeEEEeC-CcccH------HHHHHHHHCCCCeEEEeeC--chhhccCCC---CCCeeEEecCCc-ccC---------
Q 030291 14 QGLRSMVDVG-GGTGA------FARIISEAFPGIKCTVLDL--PHAVTDMPQ---TDNLKYIEGDMF-QFI--------- 71 (180)
Q Consensus 14 ~~~~~iLdiG-~G~G~------~~~~l~~~~~~~~~~~~D~--~~~~~~a~~---~~~~~~~~~d~~-~~~--------- 71 (180)
+++..|+=+| =|+|- ++..+.+.....-+++.|. |.++++.+. .-++.|+..+-. ++.
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence 4567788888 35553 3334444434555688887 447777765 566766665321 121
Q ss_pred ---CCccEEEeccc-cccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCC
Q 030291 72 ---PPSDAFFFKTV-FHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDE 120 (180)
Q Consensus 72 ---~~~D~v~~~~~-l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~ 120 (180)
..||+|++--. =+|+ |...-.=+.++++.++| .-.+++.|-....
T Consensus 178 ak~~~~DvvIvDTAGRl~i-de~Lm~El~~Ik~~~~P---~E~llVvDam~GQ 226 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLHI-DEELMDELKEIKEVINP---DETLLVVDAMIGQ 226 (451)
T ss_pred HHHcCCCEEEEeCCCcccc-cHHHHHHHHHHHhhcCC---CeEEEEEecccch
Confidence 25899998433 2233 44444558899999999 7888888865443
|
|
| >PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences | Back alignment and domain information |
|---|
Probab=80.54 E-value=11 Score=34.29 Aligned_cols=104 Identities=16% Similarity=0.090 Sum_probs=57.4
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCC-CCCeeEEecCCccc----CCCccEEEeccccccC--
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ-TDNLKYIEGDMFQF----IPPSDAFFFKTVFHFF-- 86 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~-~~~~~~~~~d~~~~----~~~~D~v~~~~~l~~~-- 86 (180)
..+..+||+|.|.-.-. |...-+...++.+|.-+..+.... ....+|++.|++.+ ...+|.+.|...|..-
T Consensus 821 ~~~~~~lDLGTGPE~Ri--LsliP~~~pvtmvD~RP~ae~m~~w~t~T~y~~~DYl~~~~~~~~~~D~vtailSLGAAaA 898 (1289)
T PF06016_consen 821 TDPDHWLDLGTGPECRI--LSLIPPDTPVTMVDTRPFAEPMNCWNTQTQYIQADYLSDAWWNGTPFDAVTAILSLGAAAA 898 (1289)
T ss_dssp CCC-CEEEET--TT-CH--HHCS-TTSEEEEEESS--SSSCCCCSTTEEEEES-TTSCCGGCC---SEEEECTCHHHHHH
T ss_pred cCcceEEEccCCcccee--eeccCCCCceEEEecCCcccccchhhhcceeeeeccccceeEecCCCCEEEEEeeehhhhh
Confidence 34688999988874322 222234778999998443332222 46788999999763 2369998887665432
Q ss_pred -ChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCC
Q 030291 87 -DDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEK 121 (180)
Q Consensus 87 -~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~ 121 (180)
..-...+.++++.+.+++. |..-++...+.+-.
T Consensus 899 ~a~~tl~~~l~~~l~~~~~~--~~~~l~lQLNcPl~ 932 (1289)
T PF06016_consen 899 SANVTLDAGLQQFLSQCVQA--NVKRLWLQLNCPLD 932 (1289)
T ss_dssp HCT--HHHHHHHHHHHHHCT--T-SEEEEE-B--SS
T ss_pred cCCCcHHHHHHHHHHHHHhC--CccEEEEEecCCCC
Confidence 2334557788888888873 56666667665544
|
The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 180 | ||||
| 1fp2_A | 352 | Crystal Structure Analysis Of Isoflavone O-Methyltr | 4e-43 | ||
| 2qyo_A | 357 | Crystal Structure Of Isoflavone O-Methyltransferase | 7e-42 | ||
| 1fpx_A | 352 | Crystal Structure Analysis Of Selenomethionine Subs | 2e-41 | ||
| 1zgj_A | 354 | Crystal Structure Of Isoflavanone 4'-O-Methyltransf | 2e-34 | ||
| 1zga_A | 357 | Crystal Structure Of Isoflavanone 4'-o-methyltransf | 2e-34 | ||
| 1zg3_A | 358 | Crystal Structure Of The Isoflavanone 4'-O-Methyltr | 2e-34 | ||
| 1kyw_A | 365 | Crystal Structure Analysis Of Caffeic Acid5-Hydroxy | 1e-22 | ||
| 3reo_A | 368 | Monolignol O-Methyltransferase (Momt) Length = 368 | 8e-22 | ||
| 3p9c_A | 364 | Crystal Structure Of Perennial Ryegrass Lpomt1 Boun | 1e-18 | ||
| 1fp1_D | 372 | Crystal Structure Analysis Of Chalcone O-Methyltran | 2e-18 | ||
| 1fpq_A | 372 | Crystal Structure Analysis Of Selenomethionine Subs | 8e-17 | ||
| 2ip2_A | 334 | Structure Of The Pyocyanin Biosynthetic Protein Phz | 6e-09 | ||
| 3lst_A | 348 | Crystal Structure Of Calo1, Methyltransferase In Ca | 2e-06 | ||
| 3gwz_A | 369 | Structure Of The Mitomycin 7-O-Methyltransferase Mm | 2e-06 | ||
| 4a6d_A | 353 | Crystal Structure Of Human N-Acetylserotonin Methyl | 5e-06 | ||
| 1tw2_A | 360 | Crystal Structure Of Carminomycin-4-O-Methyltransfe | 3e-04 | ||
| 1qzz_A | 374 | Crystal Structure Of Aclacinomycin-10-Hydroxylase ( | 4e-04 | ||
| 1x19_A | 359 | Crystal Structure Of Bchu Involved In Bacteriochlor | 6e-04 |
| >pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone O-Methyltransferase Length = 352 | Back alignment and structure |
|
| >pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase Homolog In Complex With Biochanin A And Sah Length = 357 | Back alignment and structure |
|
| >pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Isoflavone O-Methyltransferase Length = 352 | Back alignment and structure |
|
| >pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase Complexed With (+)-Pisatin Length = 354 | Back alignment and structure |
|
| >pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase Complexed With (+)-6a-hydroxymaackiain Length = 357 | Back alignment and structure |
|
| >pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone 4'-O-Methyltransferase Complexed With Sah And 2,7,4'-Trihydroxyisoflavanone Length = 358 | Back alignment and structure |
|
| >pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic Acid 35-O-Methyltransferase In Complex With 5- Hydroxyconiferaldehyde Length = 365 | Back alignment and structure |
|
| >pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt) Length = 368 | Back alignment and structure |
|
| >pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To Sah Length = 364 | Back alignment and structure |
|
| >pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase Length = 372 | Back alignment and structure |
|
| >pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Chalcone O- Methyltransferase Length = 372 | Back alignment and structure |
|
| >pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm Length = 334 | Back alignment and structure |
|
| >pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In Calicheamicin Biosynthesis, Sah Bound Form Length = 348 | Back alignment and structure |
|
| >pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr Length = 369 | Back alignment and structure |
|
| >pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin Methyltransferase (Asmt) In Complex With Sam Length = 353 | Back alignment and structure |
|
| >pdb|1TW2|A Chain A, Crystal Structure Of Carminomycin-4-O-Methyltransferase (Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah) And 4-Methoxy-E-Rhodomycin T (M-Et) Length = 360 | Back alignment and structure |
|
| >pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb) In Complex With S-Adensyl-L-Methionine (Sam) Length = 374 | Back alignment and structure |
|
| >pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll C Biosynthesis Length = 359 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Length = 352 | Back alignment and structure |
|---|
Score = 241 bits (616), Expect = 3e-80
Identities = 93/180 (51%), Positives = 130/180 (72%), Gaps = 1/180 (0%)
Query: 1 MATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNL 60
+ L ++DC +F GL S+VDVGGGTG A+II E FP +KC V D P V ++ ++NL
Sbjct: 174 LINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNL 233
Query: 61 KYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDE 120
Y+ GDMF IP +DA K + H + D+DCL++LKKC+EA+ ++G+RGKV IID+VID+
Sbjct: 234 TYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDK 293
Query: 121 KEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFGIKSLIEVYP 180
K+D+ ++T+ KLL D+ M + GKER E+EW LF+ AGF HYKI+P+ G SLIE+YP
Sbjct: 294 KKDENQVTQIKLLMDVNM-ACLNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Length = 358 | Back alignment and structure |
|---|
Score = 233 bits (595), Expect = 4e-77
Identities = 93/180 (51%), Positives = 124/180 (68%)
Query: 1 MATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNL 60
M L++++ + +F+GL S+VDVGGGTG ++I E FP +KCTV D P V ++ +NL
Sbjct: 179 MFKLVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENL 238
Query: 61 KYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDE 120
++ GDMF+ IP +DA K V H ++DE LK+LK +EAI+ G+ GKV+IIDI IDE
Sbjct: 239 NFVGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDE 298
Query: 121 KEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFGIKSLIEVYP 180
DDR LTE +L +D+ M GKERT+QEW L +AGF+ YKI PI G KSLIEVYP
Sbjct: 299 TSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 358
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A* Length = 368 | Back alignment and structure |
|---|
Score = 222 bits (567), Expect = 1e-72
Identities = 64/180 (35%), Positives = 99/180 (55%), Gaps = 4/180 (2%)
Query: 1 MATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNL 60
+ + + F+GL ++VDVGGGTGA A +I +P I DLPH + D P +
Sbjct: 189 ITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGV 248
Query: 61 KYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDE 120
+++ GDMF +P DA F K + H + DE CLKLLK C A+ + GKV++ + ++
Sbjct: 249 EHLGGDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDH---GKVIVAEYILPP 305
Query: 121 KEDDRELTESKLLFDIFM-NFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFGIKSLIEVY 179
D T+ + D M +N GGKERTE+E+ +L + +GF +K+A ++E
Sbjct: 306 SPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVASCAFNTYVMEFL 365
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Length = 372 | Back alignment and structure |
|---|
Score = 221 bits (565), Expect = 2e-72
Identities = 56/180 (31%), Positives = 98/180 (54%), Gaps = 4/180 (2%)
Query: 1 MATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNL 60
+ + F+G+ ++VDVGGG+G +I +P IK DLP + + P +
Sbjct: 195 TEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGI 254
Query: 61 KYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDE 120
+++ GDMF +P DA K V H + DE C++ L C +A++ N GKV+I++ ++ E
Sbjct: 255 EHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPN---GKVIIVEFILPE 311
Query: 121 KEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIA-PIFGIKSLIEVY 179
+ + E ++ D M VGG+ERTE+++ L +GF+ +++A F ++E Y
Sbjct: 312 EPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFY 371
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Length = 364 | Back alignment and structure |
|---|
Score = 220 bits (561), Expect = 7e-72
Identities = 58/180 (32%), Positives = 95/180 (52%), Gaps = 4/180 (2%)
Query: 1 MATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNL 60
+ T + + F+GL ++VDVGGG GA I+ +P IK DLPH +++ PQ +
Sbjct: 187 IITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGV 246
Query: 61 KYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDE 120
++ GDMF+ +P D K + H + D+ C LLK C +A+ ++ GKV+++ ++
Sbjct: 247 THVGGDMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPAH---GKVVLVQCILPV 303
Query: 121 KEDDRELTESKLLFDIFM-NFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFGIKSLIEVY 179
+ ++ D+ M N GG+ER E+E+ +L AGFT K I+ IE
Sbjct: 304 NPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTYIYANAWAIEFT 363
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Length = 348 | Back alignment and structure |
|---|
Score = 219 bits (560), Expect = 9e-72
Identities = 49/185 (26%), Positives = 78/185 (42%), Gaps = 14/185 (7%)
Query: 1 MATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ---- 56
+L + F ++ DVGGG G F + PG++ +LD V
Sbjct: 172 EHLILARAGD--FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPD 229
Query: 57 -TDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115
K +EGD + +P +D K + H + DED +++L CR + ++ G+VL+ID
Sbjct: 230 VAGRWKVVEGDFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVMPAH---GRVLVID 286
Query: 116 IVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFGIKSL 175
V+ E D + D M G+ERT E LF AG ++ + S+
Sbjct: 287 AVVPEGNDAHQSK----EMDFMMLAARTGQERTAAELEPLFTAAGLRLDRVVGTSSVMSI 342
Query: 176 IEVYP 180
P
Sbjct: 343 AVGVP 347
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Length = 369 | Back alignment and structure |
|---|
Score = 212 bits (541), Expect = 1e-68
Identities = 51/177 (28%), Positives = 90/177 (50%), Gaps = 17/177 (9%)
Query: 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ-------TDNLKYIEG 65
F G + VD+GGG G+ + +AFPG++ T+L+ P + + D + + G
Sbjct: 200 FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPG 259
Query: 66 DMFQFIPPS-DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDD 124
D F+ IP D + K V H +DD+D +++L++ A+ + ++L+ID +IDE+
Sbjct: 260 DFFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPD---SRLLVIDNLIDERPA- 315
Query: 125 RELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPI-FGIKSLIEVYP 180
S L D+ + VGG ER+E E+ +L +G + P G ++E+
Sbjct: 316 ----ASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRVERSLPCGAGPVRIVEIRR 368
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Length = 360 | Back alignment and structure |
|---|
Score = 209 bits (535), Expect = 6e-68
Identities = 47/181 (25%), Positives = 80/181 (44%), Gaps = 19/181 (10%)
Query: 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ-------TDNLKYIEG 65
+ +R ++DVGGG G FA I+ P + TVL++ V +D + +EG
Sbjct: 181 WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEG 240
Query: 66 DMFQFIPPS-DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDD 124
D F+ +P DA V + D D +++L +C EA+ G++LI + +
Sbjct: 241 DFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPG---GRILIHERDDL---HE 294
Query: 125 RELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFG-----IKSLIEVY 179
E D+ M +GG RT ++W L +AG ++ + SL+ +
Sbjct: 295 NSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLA 354
Query: 180 P 180
P
Sbjct: 355 P 355
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334 | Back alignment and structure |
|---|
Score = 207 bits (529), Expect = 2e-67
Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 16/176 (9%)
Query: 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ-------TDNLKYIEG 65
F+G RS VDVGGG+G + I +A P + +LD ++ + + + G
Sbjct: 166 FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGG 224
Query: 66 DMFQFIPPS-DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDD 124
DM Q +P + D + + D+ L+LL CREA+A +G +V++I+ I E
Sbjct: 225 DMLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDG---RVVVIERTISASEPS 281
Query: 125 RELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFGIKSLIEVYP 180
+L+D+ + G+ RT +E L GF +I + +I
Sbjct: 282 P----MSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERIVDLPMETRMIVAAR 333
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359 | Back alignment and structure |
|---|
Score = 207 bits (528), Expect = 7e-67
Identities = 44/187 (23%), Positives = 91/187 (48%), Gaps = 14/187 (7%)
Query: 2 ATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ----- 56
LL+++ + G++ M+DVGGG G + + + FP + T+L+LP A+ + +
Sbjct: 179 IQLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEK 236
Query: 57 --TDNLKYIEGDMFQ-FIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLI 113
D ++ I D+++ P +DA F + + +++ + KK +A+ S G++LI
Sbjct: 237 GVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSG---GRLLI 293
Query: 114 IDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFGIK 173
+D+VID+ E+ S + M F+V G + + + + + G+ + +
Sbjct: 294 LDMVIDDPENPNFDYLSHYILGAGMPFSVLG-FKEQARYKEILESLGYKDVTMVRKYDHL 352
Query: 174 SLIEVYP 180
+ V P
Sbjct: 353 LVQAVKP 359
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332 | Back alignment and structure |
|---|
Score = 203 bits (519), Expect = 8e-66
Identities = 47/176 (26%), Positives = 73/176 (41%), Gaps = 19/176 (10%)
Query: 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ-------TDNLKYIEG 65
+ L +VDVGGG+G + A + TVLDL + + + + + G
Sbjct: 167 WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVG 226
Query: 66 DMFQFIPPS-DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDD 124
F +P + V H +DD + +L++C EA S G VL+I+ V +
Sbjct: 227 SFFDPLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSG---GVVLVIEAVAGD---- 279
Query: 125 RELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFGIKSLIEVYP 180
+ D+ M GGKER+ E G L AG PI S++E+
Sbjct: 280 ---EHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAHPI-SYVSIVEMTA 331
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374 | Back alignment and structure |
|---|
Score = 204 bits (521), Expect = 1e-65
Identities = 44/181 (24%), Positives = 73/181 (40%), Gaps = 18/181 (9%)
Query: 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ-------TDNLKYIEG 65
+ +R ++DVGGG G I+ P ++ T+++L + D + EG
Sbjct: 180 WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEG 239
Query: 66 DMFQFIPPS-DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDD 124
D F+ +P + D V + DED L +L+ C A+ G++L++D E D
Sbjct: 240 DFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPG---GRLLVLDRADV--EGD 294
Query: 125 RELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFGIK-----SLIEVY 179
L D+ M +GG+ RT E L +AG S++E
Sbjct: 295 GADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFT 354
Query: 180 P 180
Sbjct: 355 A 355
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335 | Back alignment and structure |
|---|
Score = 174 bits (442), Expect = 3e-54
Identities = 36/185 (19%), Positives = 67/185 (36%), Gaps = 16/185 (8%)
Query: 2 ATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ----- 56
A L+ + ++D+ G F +++ P + +D + +
Sbjct: 152 AQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQ 211
Query: 57 --TDNLKYIEGDMFQFIPPS--DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVL 112
I G F+ + D H FD C +LL+K + A+A GKV+
Sbjct: 212 GVASRYHTIAGSAFEVDYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVE---GKVI 268
Query: 113 IIDIVIDEKEDDRELTESKLLFDIFM-NFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFG 171
+ D + + F + M G T E+ S+F NAGF+H ++ +
Sbjct: 269 VFDFIPNSDRITPPDA---AAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQLHSLPT 325
Query: 172 IKSLI 176
+ +
Sbjct: 326 TQQQV 330
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352 | Back alignment and structure |
|---|
Score = 165 bits (420), Expect = 8e-51
Identities = 28/179 (15%), Positives = 62/179 (34%), Gaps = 23/179 (12%)
Query: 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQT-------DNLKYIEG 65
F R+++D+ GG G + + P + + DLP +T +++ E
Sbjct: 177 FARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEK 236
Query: 66 DMFQFIPPS----DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEK 121
++ D H+FD + +++ + G +LI+ + +++
Sbjct: 237 NLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPG---GALLILTMTMNDD 293
Query: 122 EDDRELTESKLLFDIFMNFNV-GGKERTEQEWGSLFVNAGFT-----HYKIAPIFGIKS 174
L+ F + M N G+ + +AG + + G +S
Sbjct: 294 RVTPALS---ADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGERSIGRYTLLIGQRS 349
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363 | Back alignment and structure |
|---|
Score = 161 bits (410), Expect = 3e-49
Identities = 30/179 (16%), Positives = 70/179 (39%), Gaps = 16/179 (8%)
Query: 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ-------TDNLKYIEG 65
+ ++D+GG TG +A + ++ T++DLP + M + ++ +
Sbjct: 177 SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGA 236
Query: 66 DMFQFIPP----SDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEK 121
++ P DA + F +E+ + +L + ++I + KV I++ + D +
Sbjct: 237 NLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKD---SKVYIMETLWDRQ 293
Query: 122 EDDRE-LTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFGIK-SLIEV 178
+ +++ N K + NAG +I G+ S+++
Sbjct: 294 RYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEVEEIQDNIGLGHSILQC 352
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 2e-11
Identities = 38/182 (20%), Positives = 65/182 (35%), Gaps = 33/182 (18%)
Query: 21 DVGGGTGAFARIISEAFPGIKCTVLD-----LPHAVTDMPQTDNLKYIEGDM--FQFIPP 73
D+G GTG + + E +P T++D L A +KYIE D + F
Sbjct: 50 DLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEK 109
Query: 74 SDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLL 133
D H +DED +L K+ + + G + D+V E L ++ +
Sbjct: 110 YDMVVSALSIHHLEDEDKKELYKRSYSILKES---GIFINADLVHGETAFIENLNKT--I 164
Query: 134 FDIFMNFNVGGKERTEQEWGS--------------LFVNAGFTH-------YKIAPIFGI 172
+ ++ + +E + AGF Y+ A +FG
Sbjct: 165 WRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNWLKEAGFRDVSCIYKYYQFAVMFGR 224
Query: 173 KS 174
K+
Sbjct: 225 KT 226
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 57.0 bits (137), Expect = 2e-10
Identities = 25/154 (16%), Positives = 47/154 (30%), Gaps = 25/154 (16%)
Query: 17 RSMVDVGGGTGAFARIISEAFPGIKCTVLD-----LPHAVTDMPQTDNLKYIEGDMFQFI 71
+D G G G + + +L+ L A ++ K+I M
Sbjct: 95 SRALDCGAGIGRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETAT 153
Query: 72 PPS---DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELT 128
P D + + D D +K K C++A+ N G + + +
Sbjct: 154 LPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPN---GYIFFKENCSTGDRFLVDKE 210
Query: 129 ESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFT 162
+S L ++ + LF +G
Sbjct: 211 DSSLTR-------------SDIHYKRLFNESGVR 231
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 2e-09
Identities = 28/151 (18%), Positives = 49/151 (32%), Gaps = 16/151 (10%)
Query: 21 DVGGGTGAFARIISEAFPGIKCTVLD-----LPHAVTDMPQTDNLKYIEGDMFQFIPPS- 74
+ G GTG + A G ++ A +P EGD F P+
Sbjct: 51 EFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLP--KEFSITEGDFLSFEVPTS 106
Query: 75 -DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLL 133
D FH D++ + K + + GK++ D + +++ + E+
Sbjct: 107 IDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKG---GKIVFADTIFADQDAYDKTVEAAKQ 163
Query: 134 FDIFMNFNVGGKER--TEQEWGSLFVNAGFT 162
N E ++F N GF
Sbjct: 164 RGFHQLANDLQTEYYTRIPVMQTIFENNGFH 194
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 6e-08
Identities = 28/188 (14%), Positives = 56/188 (29%), Gaps = 51/188 (27%)
Query: 17 RSMVDVGGGTGAFARIISEAFPGIKCTVLD-----LPHAVTDMPQTDNLKYIEGDM--FQ 69
S++DV GTG R ++++ L+ L A + + GDM F
Sbjct: 52 ASLLDVACGTGMHLRHLADS--FGTVEGLELSADMLAIA---RRRNPDAVLHHGDMRDFS 106
Query: 70 FIPPSDAFF--FKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI----------- 116
A F ++ H + L++ + +G V++++
Sbjct: 107 LGRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDG----VVVVEPWWFPENFTPGY 162
Query: 117 ------------VIDEKEDDRELTESKLLFDIFMNFNVGGKERTE----------QEWGS 154
V RE +++ + G E +++
Sbjct: 163 VAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITHHEESHRITLFTREQYER 222
Query: 155 LFVNAGFT 162
F AG +
Sbjct: 223 AFTAAGLS 230
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 1e-07
Identities = 33/156 (21%), Positives = 60/156 (38%), Gaps = 23/156 (14%)
Query: 21 DVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDM------PQTDNLKYIEGDMFQFIPPS 74
++ GTG + R +S + T LD +M DN+++ + D+F + P
Sbjct: 52 ELASGTGYWTRHLSGL--ADRVTALDG---SAEMIAEAGRHGLDNVEFRQQDLFDWTPDR 106
Query: 75 --DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDR------E 126
DA FF D+ + R A+A G V +D+ E+ ++ E
Sbjct: 107 QWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPG---GVVEFVDVTDHERRLEQQDDSEPE 163
Query: 127 LTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFT 162
+ + L D +F + R+ E G++
Sbjct: 164 VAVRRTLQD-GRSFRIVKVFRSPAELTERLTALGWS 198
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 2e-07
Identities = 26/163 (15%), Positives = 54/163 (33%), Gaps = 28/163 (17%)
Query: 10 RPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLD-----LPHAVTDMPQ--TDNLKY 62
P G +D G G G + + + ++D L A T + + Y
Sbjct: 74 GPNKTGTSCALDCGAGIGRITKRLLLPLFR-EVDMVDITEDFLVQAKTYLGEEGKRVRNY 132
Query: 63 IEGDMFQFIPPSDAF---FFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVID 119
+ F P D++ + + V D+ + L++C+ ++ G ++I D +
Sbjct: 133 FCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLR---PNGIIVIKDNMAQ 189
Query: 120 EKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFT 162
E ++ S R + +AG +
Sbjct: 190 EGVILDDVDSSVC--------------RDLDVVRRIICSAGLS 218
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 7e-07
Identities = 25/199 (12%), Positives = 46/199 (23%), Gaps = 50/199 (25%)
Query: 17 RSMVDVGGGTGAFARIISEAFPGIKCTVLDL-PH---------AVTDMPQTDNLKYIEGD 66
++++ G G + G + T L+L A D ++GD
Sbjct: 84 GPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGD 141
Query: 67 MFQFIPPS--DA-FFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI------- 116
M F + D+ D L RE + G ++ +
Sbjct: 142 MSAFALDKRFGTVVISSGSINELDEADRRGLYASVREHLEPGG----KFLLSLAMSEAAE 197
Query: 117 --------VIDEKEDDRELTESKLLFD-------IFMNFNVGGKERTE---------QEW 152
+ + R + + L I +
Sbjct: 198 SEPLERKQELPGRSGRRYVLHVRHLPAEEIQEITIHPADETTDPFVVCTHRRRLLAPDQV 257
Query: 153 GSLFVNAGFTHYKIAPIFG 171
V +GF P
Sbjct: 258 VRELVRSGFDVIAQTPFAS 276
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 1e-06
Identities = 18/111 (16%), Positives = 28/111 (25%), Gaps = 16/111 (14%)
Query: 17 RSMVDVGGGTGAFARIISEAFPGIKCTVLD-----LPHAVTDMPQTD-NLKYIEGDM--F 68
+D+ GTG + +D L A + D+
Sbjct: 39 DDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNL 96
Query: 69 QFIPPSDAF--FFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117
D + + D +D K K + G V I DI
Sbjct: 97 NINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGG----VFIFDIN 143
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 1e-06
Identities = 27/185 (14%), Positives = 52/185 (28%), Gaps = 45/185 (24%)
Query: 17 RSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQT--DNLKYIEGDM--FQFIP 72
S++DV GTG ++ L+L + + + +GDM F+
Sbjct: 42 SSLLDVACGTGTHLEHFTKE--FGDTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGR 99
Query: 73 PSDAFF--FKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI-------------- 116
A F +V + E+ + E + G V++++
Sbjct: 100 KFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGG----VVVVEPWWFPETFADGWVSA 155
Query: 117 ---------VIDEKEDDRELTESKLLFDIFMNFNVGGKERTE----------QEWGSLFV 157
V RE +++ + G E+ + F
Sbjct: 156 DVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKGVRHFSDVHLITLFHQAEYEAAFT 215
Query: 158 NAGFT 162
AG
Sbjct: 216 AAGLR 220
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 3e-06
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 15/109 (13%)
Query: 17 RSMVDVGGGTGAFARIISEAFPGIKCTVLD-----LPHAVTDMPQTD-NLKYIEGDM--F 68
R ++D+ GTG ++E G + LD L A + + +++++GD+
Sbjct: 43 RRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEI 100
Query: 69 QFIPPSDA-FFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116
F DA F + +FD+ED KL K EA+ G V I D
Sbjct: 101 AFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGG----VFITDF 145
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 5e-06
Identities = 20/119 (16%), Positives = 44/119 (36%), Gaps = 17/119 (14%)
Query: 17 RSMVDVGGGTGAFARIISEAFPGIKCTVLD-----LPHAVTDMPQTD-NLKYIEGDM--F 68
+ + D+G GTG ++++ + T +D L A +T+ ++ + DM
Sbjct: 35 KRIADIGCGTGTATLLLAD---HYEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMREL 91
Query: 69 QFIPPSDA--FFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDR 125
+ P DA ++ + + D + + G L+ D+ K +
Sbjct: 92 ELPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGG----KLLFDVHSPYKMETL 146
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 1e-05
Identities = 16/102 (15%), Positives = 36/102 (35%), Gaps = 13/102 (12%)
Query: 21 DVGGGTGAFARIISEAFPGIKCTVLDL-PHAVTDMPQTD-----NLKYIEGDMFQFIPPS 74
+ G G A ++ G + T +D + Q + ++ ++ F +
Sbjct: 35 CLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVA 92
Query: 75 DAF-FFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115
DA+ ++F +L K + + G V I++
Sbjct: 93 DAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGG----VFILE 130
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 2e-05
Identities = 24/168 (14%), Positives = 52/168 (30%), Gaps = 29/168 (17%)
Query: 20 VDVGGGTGAFARIISE-AFPGIKCTVLDL-PHAV-------TDMPQTDNLKYIEGDMFQF 70
V G + + A PG++ +D P A+ + D ++
Sbjct: 123 ASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWK- 181
Query: 71 IPPSDAFF----FKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV--------- 117
+ + + + DD +L ++ +A+ G ++ +
Sbjct: 182 LDTREGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPG---GALVTSFLTPPPALSPDS 238
Query: 118 --IDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTH 163
+ D +L +L+F + RT + + AGFT
Sbjct: 239 PWDMQAIDPHDLQLQQLVFTRLIQPRWNA-LRTHAQTRAQLEEAGFTD 285
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 3e-05
Identities = 27/165 (16%), Positives = 64/165 (38%), Gaps = 19/165 (11%)
Query: 21 DVGGGTGAFARIISEAFPGIKCTVLDL-PHAV------TDMPQTDNLKYIEGDMFQFIP- 72
+ G G GA I+++ P + T +D+ P ++ T+ N+K+++ ++F +P
Sbjct: 43 EAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFS-LPF 101
Query: 73 PSDAF---FFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTE 129
+F F V + + LK ++ + G + +I+ E +
Sbjct: 102 EDSSFDHIFVCFVLEHLQSPE--EALKSLKKVLKPG---GTITVIEGDHGSCYFHPEGKK 156
Query: 130 SKLLFDIFMNF--NVGGKERTEQEWGSLFVNAGFTHYKIAPIFGI 172
+ ++ + + G ++ L +GF ++ P
Sbjct: 157 AIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEKIRVEPRMVY 201
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 4e-05
Identities = 21/159 (13%), Positives = 46/159 (28%), Gaps = 23/159 (14%)
Query: 17 RSMVDVGGGTGAFARIISEAFPGIKCTVLD-----LPHAVTDMPQTDNLKYIEGDMFQFI 71
+ D+G G G ++++ + T +D L A +P N + + D+ +
Sbjct: 35 LNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLP---NTNFGKADLATWK 91
Query: 72 PPS--DAFFFKTVFHFFDD-----EDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDD 124
P D + VF + D + L+ + + +
Sbjct: 92 PAQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAM------- 144
Query: 125 RELTESKLLFDIFMNFNVGGKER-TEQEWGSLFVNAGFT 162
E + D F + K ++ +
Sbjct: 145 HETADGGPWKDAFSGGGLRRKPLPPPSDYFNALSPKSSR 183
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 4e-05
Identities = 28/166 (16%), Positives = 55/166 (33%), Gaps = 30/166 (18%)
Query: 21 DVGGGTGAFARIISEAFPGIKCTVLDL--------PHAVTDMPQTDNLKYIEGDMFQFIP 72
D+G G GA + +++ LD + D D ++ ++GD IP
Sbjct: 49 DIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGD-VHNIP 106
Query: 73 PSDAFF----FKTVFHFFDDED-----CLKLLKKCREAIASNGERGKVLIIDIVIDEKED 123
D + + F++D ++LK G GK I +++
Sbjct: 107 IEDNYADLIVSRGSVFFWEDVATAFREIYRILKS--------G--GKTYIGGGFGNKELR 156
Query: 124 DRELTE-SKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAP 168
D E + D + + + ++ G + Y+I
Sbjct: 157 DSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEIIL 202
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 1e-04
Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 21/155 (13%)
Query: 20 VDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQFIPPSDAFF- 78
V++G GTG FA + ++ + ++ + + ++G +P D F
Sbjct: 52 VEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKRGVFVLKGTAEN-LPLKDESFD 104
Query: 79 ---FKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFD 135
T F DD + + LK+ + G LI+ IV E RE ++K
Sbjct: 105 FALMVTTICFVDDPE--RALKEAYRILKKGG----YLIVGIVDRESFLGREYEKNKEKSV 158
Query: 136 IFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIF 170
F + + +E L AGF +K+
Sbjct: 159 ----FYKNARFFSTEELMDLMRKAGFEEFKVVQTL 189
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 39.4 bits (92), Expect = 2e-04
Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 18/104 (17%)
Query: 21 DVGGGTGAFARIISEAFPGIKCTVLD-----LPHAVTDMPQTDNLKYIEGDMFQFIPPSD 75
D G G G +S+ G D + +A D P +++ GD+
Sbjct: 52 DAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFP---EARWVVGDLSVDQISET 106
Query: 76 AF----FFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115
F V F ++ L A+ ++G +I
Sbjct: 107 DFDLIVSAGNVMGFLAEDGREPALANIHRALGADG----RAVIG 146
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 38.5 bits (89), Expect = 5e-04
Identities = 21/136 (15%), Positives = 45/136 (33%), Gaps = 23/136 (16%)
Query: 10 RPIFQGLRSMVDVGGGTGAFARIISEAFP---GI------------KCTVLDLPHAVTDM 54
+F ++D G G + +S+ FP G+ + T ++ + + D
Sbjct: 51 ELLFNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENTAANISYRLLDG 110
Query: 55 PQTDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLII 114
+ I ++ + +T FH E L + R + G + +I
Sbjct: 111 LVPEQAAQIHSEIG-----DANIYMRTGFHHIPVEKRELLGQSLRILLGKQ---GAMYLI 162
Query: 115 DIVIDEKEDDRELTES 130
++ + L E
Sbjct: 163 ELGTGCIDFFNSLLEK 178
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} Length = 274 | Back alignment and structure |
|---|
Score = 38.4 bits (89), Expect = 6e-04
Identities = 26/166 (15%), Positives = 49/166 (29%), Gaps = 33/166 (19%)
Query: 14 QGLRSMVDVGGGTGAFA---RIISEAFPGIKCTVLD-----LPHAVTDMPQTDNLKYIEG 65
G+ +D+G G + P + +D L H + + N
Sbjct: 76 AGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTA 135
Query: 66 DMFQ---------------FIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGK 110
D+ F P A + H+ + +++ R+A+A G
Sbjct: 136 DVRDPEYILNHPDVRRMIDFSRP-AAIMLVGMLHYLSPDVVDRVVGAYRDALAP----GS 190
Query: 111 VLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLF 156
L + ++D ++ I G RT +E F
Sbjct: 191 YLFMTSLVDTGLPAQQKLA-----RITRENLGEGWARTPEEIERQF 231
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286 | Back alignment and structure |
|---|
Score = 38.0 bits (88), Expect = 7e-04
Identities = 22/134 (16%), Positives = 43/134 (32%), Gaps = 17/134 (12%)
Query: 21 DVGGGTGAFARIISEAFPGIKCTVLDL-PHAVTDMPQT-----DNLKYIEGDMFQFIPPS 74
D+G G G + +S G T D +++ + +T N+ D+
Sbjct: 126 DLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQE 183
Query: 75 --DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEK----EDDRELT 128
D VF F + E ++K +E G LI+ + +
Sbjct: 184 NYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVG---GYNLIVAAMSTDDVPCPLPFSFTF 240
Query: 129 ESKLLFDIFMNFNV 142
L + + ++
Sbjct: 241 AENELKEYYKDWEF 254
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 38.7 bits (89), Expect = 7e-04
Identities = 20/112 (17%), Positives = 34/112 (30%), Gaps = 32/112 (28%)
Query: 49 HAVTDMPQTDNLKYIEGDMFQ-FIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGE 107
H + + +Y D+ F F F D +D K +I S E
Sbjct: 6 HMDFETGEHQ-YQY--KDILSVFEDA-----FVDNFDCKDVQDMPK-------SILSKEE 50
Query: 108 RGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFN-------VGGKERTEQEW 152
ID +I K+ + + LF ++ V R ++
Sbjct: 51 ------IDHIIMSKDAV---SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF 93
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 38.0 bits (88), Expect = 7e-04
Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 14/112 (12%)
Query: 11 PIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDL-PHAVTDMPQTDNLKYIEGDMFQ 69
P F+G R ++D+G G G F + E GI+ +D+ + ++ D +
Sbjct: 37 PYFKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEG--KFNVVKSDAIE 92
Query: 70 FIPPSDAFFFKTVFHF-----FDDEDCLKLLKKCREAIASNGERGKVLIIDI 116
++ + V D E +LL C + + ++I+
Sbjct: 93 YLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSS----YIVIES 140
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 180 | |||
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.95 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.95 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.94 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.94 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.94 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.94 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.94 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.93 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.93 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.92 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.92 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.91 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.91 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.91 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.9 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.89 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.89 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.89 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.87 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.85 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.85 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.85 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.85 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.84 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.84 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.84 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.84 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.84 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.84 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.83 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.83 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.83 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.83 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.83 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.83 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.83 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.82 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.82 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.82 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.82 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.82 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.82 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.82 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.82 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.82 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.82 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.81 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.81 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.81 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.81 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.8 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.8 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.8 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.8 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.8 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.79 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.79 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.79 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.79 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.78 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.78 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.78 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.78 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.77 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.77 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.77 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.77 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.76 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.76 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.75 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.75 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.75 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.74 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.74 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.74 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.73 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.73 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.73 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.72 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.71 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.71 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.71 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.7 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.7 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.7 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.7 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.69 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.69 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.69 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.68 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.68 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.68 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.68 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.67 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.67 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.67 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.67 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.66 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.66 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.65 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.63 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.63 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.62 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.61 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.61 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.61 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.6 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.6 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.59 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.59 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.59 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.58 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.58 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.58 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.57 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.57 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.57 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.57 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.57 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.57 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.56 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.56 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.56 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.56 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.55 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.55 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.53 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.53 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.52 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.52 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.52 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.51 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.51 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.51 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.51 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.5 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.5 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.5 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.5 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.5 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.49 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.49 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.49 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.49 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.48 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.48 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.48 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.47 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.47 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.47 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.47 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.46 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.46 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.46 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.45 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.45 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.45 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.45 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.45 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.44 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.44 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.44 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.43 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.43 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.43 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.43 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.43 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.42 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.42 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.42 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.42 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.41 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.41 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.41 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.41 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.4 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.4 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.39 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.39 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.39 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.39 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.38 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.38 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.38 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.38 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.38 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.38 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.37 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.36 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.36 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.35 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.35 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.35 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.34 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.34 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.33 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.33 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.32 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.31 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.3 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.3 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.3 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.29 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.29 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.29 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.28 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.28 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.28 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.28 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.28 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.27 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.27 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.27 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.27 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.27 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.27 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.27 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.27 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.26 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.26 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.26 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.25 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.24 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.23 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.22 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.21 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.21 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.2 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.19 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.18 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.17 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.17 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.16 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.11 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.11 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.08 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.05 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.05 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 99.04 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.03 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.03 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.01 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.01 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.01 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.0 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.99 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.96 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.95 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.95 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.95 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.9 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.89 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.88 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.88 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.82 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.82 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.82 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.8 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.79 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.78 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.76 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.76 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.76 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.73 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.69 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.68 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.67 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.66 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.61 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.59 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.58 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.57 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.55 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.55 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.49 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 98.49 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.48 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.45 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.44 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.41 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.3 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.3 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.29 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.22 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.15 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.15 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 98.14 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 98.11 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 98.09 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.08 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 98.08 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.07 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 98.03 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 97.95 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.92 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.91 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.85 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 97.72 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.58 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 97.55 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 97.46 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 97.38 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.32 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 97.21 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.0 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 96.54 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 96.24 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 95.42 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 94.91 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 94.75 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 94.72 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 94.57 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 94.48 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 94.34 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 94.29 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 94.09 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 94.08 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 94.08 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 93.19 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 93.16 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 92.75 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 92.73 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 92.66 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 92.54 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 92.48 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 92.43 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 91.94 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 91.73 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 91.69 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 91.61 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 91.5 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 91.4 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 91.4 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 91.33 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 91.21 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 91.06 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 91.04 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 90.89 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 90.81 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 90.75 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 90.73 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 90.54 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 90.22 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 90.08 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 89.96 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 89.68 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 89.67 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 89.62 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 89.57 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 89.35 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 89.18 | |
| 3mag_A | 307 | VP39; methylated adenine, methyltransferase, RNA C | 89.06 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 89.02 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 88.82 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 88.77 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 88.62 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 88.58 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 88.56 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 88.34 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 88.23 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 87.35 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 87.28 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 87.22 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 87.19 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 87.18 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 86.95 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 86.93 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 86.68 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 86.58 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 86.04 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 85.95 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 85.74 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 85.69 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 85.48 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 85.23 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 84.56 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 84.56 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 84.55 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 84.53 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 84.52 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 84.28 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 84.11 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 83.23 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 82.94 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 82.1 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 81.62 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 81.0 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 80.91 | |
| 2hwk_A | 320 | Helicase NSP2; rossman fold, alpha/beta/alpha, mul | 80.55 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 80.35 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 80.31 | |
| 1vpt_A | 348 | VP39; RNA CAP, poly(A) polymerase, methyltransfera | 80.01 |
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.1e-28 Score=184.13 Aligned_cols=169 Identities=27% Similarity=0.496 Sum_probs=143.7
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCC------CCCeeEEecCCcc-cCCCccE
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ------TDNLKYIEGDMFQ-FIPPSDA 76 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~------~~~~~~~~~d~~~-~~~~~D~ 76 (180)
.+++.++ +.+..+|+|||||+|.++..+++.+|+.+++.+|++++++.+++ ..|+++..+|+++ +.+.+|+
T Consensus 170 ~~~~~~~--~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~~~D~ 247 (353)
T 4a6d_A 170 SVLTAFD--LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLPEADL 247 (353)
T ss_dssp HHHHSSC--GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEEEESCTTTSCCCCCSE
T ss_pred HHHHhcC--cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceeeecCccccCCCCCceE
Confidence 4556666 77888999999999999999999999999999999887776653 5789999999986 4567999
Q ss_pred EEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHH
Q 030291 77 FFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLF 156 (180)
Q Consensus 77 v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 156 (180)
+++..++|+++|++..++|++++++|+| ||++++.|...++..... ......++.++...+++.+|.++|.+++
T Consensus 248 ~~~~~vlh~~~d~~~~~iL~~~~~al~p---gg~lli~e~~~~~~~~~~---~~~~~~dl~ml~~~~g~ert~~e~~~ll 321 (353)
T 4a6d_A 248 YILARVLHDWADGKCSHLLERIYHTCKP---GGGILVIESLLDEDRRGP---LLTQLYSLNMLVQTEGQERTPTHYHMLL 321 (353)
T ss_dssp EEEESSGGGSCHHHHHHHHHHHHHHCCT---TCEEEEEECCCCTTSCCC---HHHHHHHHHHHHSSSCCCCCHHHHHHHH
T ss_pred EEeeeecccCCHHHHHHHHHHHHhhCCC---CCEEEEEEeeeCCCCCCC---HHHHHHHHHHHHhCCCcCCCHHHHHHHH
Confidence 9999999999999999999999999999 999999998876544322 1223345555555677899999999999
Q ss_pred HHcCCeEEEEeecCCceeEEEEeC
Q 030291 157 VNAGFTHYKIAPIFGIKSLIEVYP 180 (180)
Q Consensus 157 ~~aGf~~~~~~~~~~~~~~~~~~~ 180 (180)
+++||+.++++..++..++|+++|
T Consensus 322 ~~AGf~~v~v~~~~~~~~~i~ArK 345 (353)
T 4a6d_A 322 SSAGFRDFQFKKTGAIYDAILARK 345 (353)
T ss_dssp HHHTCEEEEEECCSSSCEEEEEEC
T ss_pred HHCCCceEEEEEcCCceEEEEEEe
Confidence 999999999999999999999886
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.9e-26 Score=174.81 Aligned_cols=165 Identities=35% Similarity=0.631 Sum_probs=138.9
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCCCCCeeEEecCCcccCCCccEEEeccccccCChHHHH
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCL 92 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~~~~~ 92 (180)
+.+..+|||||||+|.++..+++.+|+.+++++|++.+++.+++..++++..+|+.++.|..|+|++..++|++++++..
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~p~~D~v~~~~vlh~~~d~~~~ 278 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGDMFKEVPSGDTILMKWILHDWSDQHCA 278 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHH
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcCCeEEEeCCcCCCCCCCCEEEehHHhccCCHHHHH
Confidence 56778999999999999999999999999999999779999988889999999998766656999999999999999888
Q ss_pred HHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEe-ecCCcccCHHHHHHHHHHcCCeEEEEeecCC
Q 030291 93 KLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNF-NVGGKERTEQEWGSLFVNAGFTHYKIAPIFG 171 (180)
Q Consensus 93 ~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~ 171 (180)
++|++++++|+| ||++++.+...++..............+..+.. ..+++.++.++|.++++++||+.+++....+
T Consensus 279 ~~L~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~~~~ 355 (364)
T 3p9c_A 279 TLLKNCYDALPA---HGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTYIYA 355 (364)
T ss_dssp HHHHHHHHHSCT---TCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHTTCCEEEEEEEET
T ss_pred HHHHHHHHHcCC---CCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHCCCceEEEEEcCC
Confidence 999999999999 999999998876543322111122233433332 2456788999999999999999999999999
Q ss_pred ceeEEEEeC
Q 030291 172 IKSLIEVYP 180 (180)
Q Consensus 172 ~~~~~~~~~ 180 (180)
..++|+++|
T Consensus 356 ~~~vie~~k 364 (364)
T 3p9c_A 356 NAWAIEFTK 364 (364)
T ss_dssp TEEEEEEEC
T ss_pred ceEEEEEeC
Confidence 999999987
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.2e-26 Score=174.38 Aligned_cols=172 Identities=37% Similarity=0.631 Sum_probs=140.9
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCCCCCeeEEecCCcccCCCccEEEeccccc
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVFH 84 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~d~~~~~~~~D~v~~~~~l~ 84 (180)
+++.++ .+.+..+|||||||+|.++..+++.+|+.+++++|++.+++.+++..++++..+|+.++.|..|+|++..++|
T Consensus 194 ~~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~~D~v~~~~vlh 272 (368)
T 3reo_A 194 ILEMYN-GFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLGGDMFDGVPKGDAIFIKWICH 272 (368)
T ss_dssp HHTTCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCCSEEEEESCGG
T ss_pred HHHhcc-cccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhcCCCEEEecCCCCCCCCCCEEEEechhh
Confidence 344443 2567789999999999999999999999999999997799999888899999999987666569999999999
Q ss_pred cCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEee-cCCcccCHHHHHHHHHHcCCeE
Q 030291 85 FFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFN-VGGKERTEQEWGSLFVNAGFTH 163 (180)
Q Consensus 85 ~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~aGf~~ 163 (180)
++++++..++|++++++|+| ||++++.+...++..............+..+... .+++.++.++|.++++++||++
T Consensus 273 ~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~AGF~~ 349 (368)
T 3reo_A 273 DWSDEHCLKLLKNCYAALPD---HGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRG 349 (368)
T ss_dssp GBCHHHHHHHHHHHHHHSCT---TCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHTTCCE
T ss_pred cCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHCCCee
Confidence 99999888999999999999 9999999988765443221112222333333322 3567889999999999999999
Q ss_pred EEEeecCCceeEEEEeC
Q 030291 164 YKIAPIFGIKSLIEVYP 180 (180)
Q Consensus 164 ~~~~~~~~~~~~~~~~~ 180 (180)
+++....+..++++++|
T Consensus 350 v~~~~~~~~~~vie~~k 366 (368)
T 3reo_A 350 FKVASCAFNTYVMEFLK 366 (368)
T ss_dssp EEEEEEETTEEEEEEEC
T ss_pred eEEEEeCCCcEEEEEEe
Confidence 99999989899999986
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.3e-26 Score=173.69 Aligned_cols=168 Identities=29% Similarity=0.533 Sum_probs=136.7
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCC-----CCCeeEEecCCcccCCCccEEE
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ-----TDNLKYIEGDMFQFIPPSDAFF 78 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~-----~~~~~~~~~d~~~~~~~~D~v~ 78 (180)
.+++.++ +++..+|||||||+|..+..+++.+|+.+++++|++.++...+. ..++++..+|+.++.|.||+|+
T Consensus 175 ~~~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~p~~D~v~ 252 (348)
T 3lst_A 175 ILARAGD--FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREVPHADVHV 252 (348)
T ss_dssp HHHHHSC--CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCTTTCCCCCSEEE
T ss_pred HHHHhCC--ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEecCCCCCCCCCcEEE
Confidence 4556666 77889999999999999999999999999999999775543321 4689999999976666999999
Q ss_pred eccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHH
Q 030291 79 FKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVN 158 (180)
Q Consensus 79 ~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 158 (180)
+..++|++++++..++|++++++||| ||.+++.+...+...... .....+..+....+++.++.++|.+++++
T Consensus 253 ~~~vlh~~~d~~~~~~L~~~~~~Lkp---gG~l~i~e~~~~~~~~~~----~~~~~d~~~~~~~~~~~~t~~e~~~ll~~ 325 (348)
T 3lst_A 253 LKRILHNWGDEDSVRILTNCRRVMPA---HGRVLVIDAVVPEGNDAH----QSKEMDFMMLAARTGQERTAAELEPLFTA 325 (348)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHTCCT---TCEEEEEECCBCSSSSCC----HHHHHHHHHHHTTSCCCCBHHHHHHHHHH
T ss_pred EehhccCCCHHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCCcc----hhhhcChhhhhcCCCcCCCHHHHHHHHHH
Confidence 99999999999878999999999999 999999998766543221 11122222222345678899999999999
Q ss_pred cCCeEEEEeecCCceeEEEEeC
Q 030291 159 AGFTHYKIAPIFGIKSLIEVYP 180 (180)
Q Consensus 159 aGf~~~~~~~~~~~~~~~~~~~ 180 (180)
+||+++++....+..++++++|
T Consensus 326 aGf~~~~~~~~~~~~~vie~~p 347 (348)
T 3lst_A 326 AGLRLDRVVGTSSVMSIAVGVP 347 (348)
T ss_dssp TTEEEEEEEECSSSCEEEEEEE
T ss_pred CCCceEEEEECCCCcEEEEEEe
Confidence 9999999999888899999876
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-25 Score=170.81 Aligned_cols=167 Identities=54% Similarity=1.026 Sum_probs=135.6
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCCCCCeeEEecCCcccCCCccEEEeccccccCChHHHH
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCL 92 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~~~~~ 92 (180)
+++..+|||||||+|.++..+++.+|+.+++++|++.+++.+++..++++..+|+.++.|.||+|++..++||++++...
T Consensus 186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~~D~v~~~~~lh~~~d~~~~ 265 (352)
T 1fp2_A 186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCL 265 (352)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHH
T ss_pred cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhcccCCCcEEEeccccCCCCCccEEEeehhhccCCHHHHH
Confidence 66789999999999999999999999999999999669999987677999999997777779999999999999999888
Q ss_pred HHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEEEEeecCCc
Q 030291 93 KLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFGI 172 (180)
Q Consensus 93 ~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~ 172 (180)
++|++++++|+|.++||.+++.+...+...............+..+.. .+++.++.++|.++++++||+++++...++.
T Consensus 266 ~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~-~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~ 344 (352)
T 1fp2_A 266 RILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-LNGKERNEEEWKKLFIEAGFQHYKISPLTGF 344 (352)
T ss_dssp HHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-GTCCCEEHHHHHHHHHHTTCCEEEEEEEETT
T ss_pred HHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHh-ccCCCCCHHHHHHHHHHCCCCeeEEEecCCC
Confidence 999999999998323699999998876543321011111222222222 2356689999999999999999999988888
Q ss_pred eeEEEEeC
Q 030291 173 KSLIEVYP 180 (180)
Q Consensus 173 ~~~~~~~~ 180 (180)
.++|+++|
T Consensus 345 ~~vie~~~ 352 (352)
T 1fp2_A 345 LSLIEIYP 352 (352)
T ss_dssp EEEEEEEC
T ss_pred cEEEEEeC
Confidence 99999987
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.3e-26 Score=171.07 Aligned_cols=165 Identities=29% Similarity=0.474 Sum_probs=136.0
Q ss_pred ccccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCC-------CCCeeEEecCCcccCC-Cc
Q 030291 3 TLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ-------TDNLKYIEGDMFQFIP-PS 74 (180)
Q Consensus 3 ~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~-------~~~~~~~~~d~~~~~~-~~ 74 (180)
..+++.++ +++..+|||||||+|..+..+++.+|+.+++++|++.+++.+++ ..++++..+|+.++.| .|
T Consensus 159 ~~~~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p~~~ 236 (332)
T 3i53_A 159 TGIAAKYD--WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGA 236 (332)
T ss_dssp TTGGGSSC--CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCSC
T ss_pred HHHHHhCC--CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCCCCCCC
Confidence 34566666 67789999999999999999999999999999999668888764 3789999999987666 79
Q ss_pred cEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHH
Q 030291 75 DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGS 154 (180)
Q Consensus 75 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (180)
|+|++..++||+++++..++|++++++|+| ||.+++.+...+.. ... ...+..+....+++.++.++|.+
T Consensus 237 D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~-~~~------~~~d~~~~~~~~~~~~t~~e~~~ 306 (332)
T 3i53_A 237 GGYVLSAVLHDWDDLSAVAILRRCAEAAGS---GGVVLVIEAVAGDE-HAG------TGMDLRMLTYFGGKERSLAELGE 306 (332)
T ss_dssp SEEEEESCGGGSCHHHHHHHHHHHHHHHTT---TCEEEEEECCCC----CC------HHHHHHHHHHHSCCCCCHHHHHH
T ss_pred cEEEEehhhccCCHHHHHHHHHHHHHhcCC---CCEEEEEeecCCCC-Ccc------HHHHHHHHhhCCCCCCCHHHHHH
Confidence 999999999999999888999999999999 99999999876654 111 12222222334567889999999
Q ss_pred HHHHcCCeEEEEeecCCceeEEEEeC
Q 030291 155 LFVNAGFTHYKIAPIFGIKSLIEVYP 180 (180)
Q Consensus 155 ~l~~aGf~~~~~~~~~~~~~~~~~~~ 180 (180)
+++++||+++++....+ .+++++++
T Consensus 307 ll~~aGf~~~~~~~~~~-~~vie~r~ 331 (332)
T 3i53_A 307 LAAQAGLAVRAAHPISY-VSIVEMTA 331 (332)
T ss_dssp HHHHTTEEEEEEEECSS-SEEEEEEE
T ss_pred HHHHCCCEEEEEEECCC-cEEEEEee
Confidence 99999999999999888 89998864
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-25 Score=170.88 Aligned_cols=176 Identities=52% Similarity=0.905 Sum_probs=139.7
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCCCCCeeEEecCCcccCCCccEEEeccccc
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVFH 84 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~d~~~~~~~~D~v~~~~~l~ 84 (180)
+++.+++.+.+..+|||||||+|.++..+++.+|+.+++++|++.+++.+++..++++..+|+.++.|.||+|++..++|
T Consensus 183 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~~D~v~~~~vlh 262 (358)
T 1zg3_A 183 VLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLLKWVLH 262 (358)
T ss_dssp HHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCCSSEEEEECCTTTCCCCCSEEEEESCGG
T ss_pred HHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccCCCcEEEeCccCCCCCCceEEEEccccc
Confidence 34445212567789999999999999999999999999999997799888876779999999987777899999999999
Q ss_pred cCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEE
Q 030291 85 FFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHY 164 (180)
Q Consensus 85 ~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 164 (180)
+++++...++|++++++|+|.++||.+++.+...+...............+..+....+++.++.++|.++++++||+++
T Consensus 263 ~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 342 (358)
T 1zg3_A 263 DWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSY 342 (358)
T ss_dssp GSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCCEE
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcCCCee
Confidence 99999888999999999998211588999998876543321011122223332222345677899999999999999999
Q ss_pred EEeecCCceeEEEEeC
Q 030291 165 KIAPIFGIKSLIEVYP 180 (180)
Q Consensus 165 ~~~~~~~~~~~~~~~~ 180 (180)
++....+..++|+++|
T Consensus 343 ~~~~~~~~~~vie~~~ 358 (358)
T 1zg3_A 343 KITPISGFKSLIEVYP 358 (358)
T ss_dssp EEEEETTTEEEEEEEC
T ss_pred EEEecCCCcEEEEEeC
Confidence 9999888889999987
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-25 Score=172.82 Aligned_cols=167 Identities=30% Similarity=0.611 Sum_probs=139.8
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCC-------CCCeeEEecCCcccCC-Ccc
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ-------TDNLKYIEGDMFQFIP-PSD 75 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~-------~~~~~~~~~d~~~~~~-~~D 75 (180)
.+++.++ +++..+|||||||+|.++..+++.+|+.+++++|++.+++.+++ ..++++..+|+.++.| .||
T Consensus 193 ~l~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p~~~D 270 (369)
T 3gwz_A 193 QVAAAYD--FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFFETIPDGAD 270 (369)
T ss_dssp HHHHHSC--CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTTCCCSSCS
T ss_pred HHHHhCC--CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCCCCCCCCce
Confidence 3555666 67889999999999999999999999999999999658887764 4689999999987666 699
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHH
Q 030291 76 AFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSL 155 (180)
Q Consensus 76 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (180)
+|++..++|+++++...++|++++++|+| ||.+++.+...+...... ....+..+....+++.++.++|.++
T Consensus 271 ~v~~~~vlh~~~d~~~~~~L~~~~~~L~p---gG~l~i~e~~~~~~~~~~-----~~~~d~~~~~~~~g~~~t~~e~~~l 342 (369)
T 3gwz_A 271 VYLIKHVLHDWDDDDVVRILRRIATAMKP---DSRLLVIDNLIDERPAAS-----TLFVDLLLLVLVGGAERSESEFAAL 342 (369)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHTTCCT---TCEEEEEEEBCCSSCCHH-----HHHHHHHHHHHHSCCCBCHHHHHHH
T ss_pred EEEhhhhhccCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCCCc-----hhHhhHHHHhhcCCccCCHHHHHHH
Confidence 99999999999999888899999999999 999999998876653321 2233333333356688999999999
Q ss_pred HHHcCCeEEEEee-cCCceeEEEEeC
Q 030291 156 FVNAGFTHYKIAP-IFGIKSLIEVYP 180 (180)
Q Consensus 156 l~~aGf~~~~~~~-~~~~~~~~~~~~ 180 (180)
++++||+++++.. ..+..++|+++|
T Consensus 343 l~~aGf~~~~~~~~~~~~~svie~~~ 368 (369)
T 3gwz_A 343 LEKSGLRVERSLPCGAGPVRIVEIRR 368 (369)
T ss_dssp HHTTTEEEEEEEECSSSSEEEEEEEE
T ss_pred HHHCCCeEEEEEECCCCCcEEEEEEe
Confidence 9999999999998 678899999876
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=9.8e-25 Score=167.56 Aligned_cols=165 Identities=33% Similarity=0.685 Sum_probs=133.0
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCCCCCeeEEecCCcccCCCccEEEeccccccCChHHHH
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCL 92 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~~~~~ 92 (180)
+++..+|||||||+|.++..+++.+|..+++++|++.+++.+++..++++..+|+.++.|.+|+|++..++||++++...
T Consensus 207 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~~D~v~~~~~lh~~~d~~~~ 286 (372)
T 1fp1_D 207 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCI 286 (372)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHH
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhhcCCCEEEeCCcccCCCCCCEEEEecccccCCHHHHH
Confidence 56778999999999999999999999999999999669999888778999999997766679999999999999999888
Q ss_pred HHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEEEEee-cCC
Q 030291 93 KLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAP-IFG 171 (180)
Q Consensus 93 ~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~-~~~ 171 (180)
.+|++++++|+| ||.+++.+...+...............+..+....+++.++.++|.++++++||+++++.. ..+
T Consensus 287 ~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~ 363 (372)
T 1fp1_D 287 EFLSNCHKALSP---NGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVACRAFN 363 (372)
T ss_dssp HHHHHHHHHEEE---EEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEEEEEETT
T ss_pred HHHHHHHHhcCC---CCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHHHHHCCCceEEEEEcCCC
Confidence 999999999999 9999999987765432210000112222222212345678999999999999999999888 455
Q ss_pred ceeEEEEeC
Q 030291 172 IKSLIEVYP 180 (180)
Q Consensus 172 ~~~~~~~~~ 180 (180)
..++|+++|
T Consensus 364 ~~~vie~~~ 372 (372)
T 1fp1_D 364 SLGVMEFYK 372 (372)
T ss_dssp TEEEEEEEC
T ss_pred CeEEEEEeC
Confidence 249999887
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-24 Score=158.27 Aligned_cols=165 Identities=17% Similarity=0.182 Sum_probs=122.7
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHC--CCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcc-cCCCccEEEecc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAF--PGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQ-FIPPSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~--~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~-~~~~~D~v~~~~ 81 (180)
++++.+|||||||+|..+..+++.. ++++++++|+++ |++.|++ ..++++.++|+.+ +.+++|+|+++.
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~ 147 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF 147 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEES
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeee
Confidence 5788999999999999999999875 578999999976 9998864 4589999999966 556799999999
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhh-hhhhhccc-eeeEe-----------ecCCcccC
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDREL-TESKLLFD-IFMNF-----------NVGGKERT 148 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~-----------~~~~~~~~ 148 (180)
++||++++++..+|++++++||| ||.+++.+............ ......+. ..... .......+
T Consensus 148 ~l~~~~~~~~~~~l~~i~~~Lkp---GG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~s 224 (261)
T 4gek_A 148 TLQFLEPSERQALLDKIYQGLNP---GGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDS 224 (261)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEBCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCBC
T ss_pred eeeecCchhHhHHHHHHHHHcCC---CcEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccCCC
Confidence 99999998888899999999999 99999998876544322111 00000000 00000 00013468
Q ss_pred HHHHHHHHHHcCCeEEEEeec-CCceeEEEEeC
Q 030291 149 EQEWGSLFVNAGFTHYKIAPI-FGIKSLIEVYP 180 (180)
Q Consensus 149 ~~~~~~~l~~aGf~~~~~~~~-~~~~~~~~~~~ 180 (180)
.+++.++|+++||+.++++.. ..+.++++.+|
T Consensus 225 ~~~~~~~L~~AGF~~ve~~fq~~nF~~~iA~K~ 257 (261)
T 4gek_A 225 VETHKARLHKAGFEHSELWFQCFNFGSLVALKA 257 (261)
T ss_dssp HHHHHHHHHHHTCSEEEEEEEETTEEEEEEECC
T ss_pred HHHHHHHHHHcCCCeEEEEEEeccEEEEEEEEc
Confidence 899999999999999988643 45666666553
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-24 Score=163.53 Aligned_cols=167 Identities=28% Similarity=0.496 Sum_probs=134.0
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCC-------CCCeeEEecCCcccCC-Ccc
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ-------TDNLKYIEGDMFQFIP-PSD 75 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~-------~~~~~~~~~d~~~~~~-~~D 75 (180)
.+++.++ +++ .+|||||||+|..+..+++.+|+.+++++|++.+++.+++ ..++++..+|+.++.+ .||
T Consensus 159 ~~~~~~~--~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D 235 (334)
T 2ip2_A 159 EIPRLLD--FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSNGD 235 (334)
T ss_dssp HHHHHSC--CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTTCCCSSCS
T ss_pred HHHHhCC--CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCCCCCCCCC
Confidence 3445555 556 8999999999999999999999999999999558877764 3689999999977555 599
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHH
Q 030291 76 AFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSL 155 (180)
Q Consensus 76 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (180)
+|++..++|+++++....++++++++|+| ||.+++.+...++..... .....+..+....+++.++.++|.++
T Consensus 236 ~v~~~~vl~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~----~~~~~~~~~~~~~~~~~~t~~e~~~l 308 (334)
T 2ip2_A 236 IYLLSRIIGDLDEAASLRLLGNCREAMAG---DGRVVVIERTISASEPSP----MSVLWDVHLFMACAGRHRTTEEVVDL 308 (334)
T ss_dssp EEEEESCGGGCCHHHHHHHHHHHHHHSCT---TCEEEEEECCBCSSSCCH----HHHHHHHHHHHHHSCCCCBHHHHHHH
T ss_pred EEEEchhccCCCHHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCCcc----hhHHhhhHhHhhCCCcCCCHHHHHHH
Confidence 99999999999999888999999999999 999999998765543211 11122222222234567899999999
Q ss_pred HHHcCCeEEEEeecCCceeEEEEeC
Q 030291 156 FVNAGFTHYKIAPIFGIKSLIEVYP 180 (180)
Q Consensus 156 l~~aGf~~~~~~~~~~~~~~~~~~~ 180 (180)
++++||+++++...++..++|+++|
T Consensus 309 l~~aGf~~~~~~~~~~~~~~i~~~~ 333 (334)
T 2ip2_A 309 LGRGGFAVERIVDLPMETRMIVAAR 333 (334)
T ss_dssp HHHTTEEEEEEEEETTTEEEEEEEE
T ss_pred HHHCCCceeEEEECCCCCEEEEEEe
Confidence 9999999999998888889998875
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.2e-24 Score=163.04 Aligned_cols=164 Identities=18% Similarity=0.310 Sum_probs=129.8
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCC-------CCCeeEEecCCccc---CC-CccEEEeccc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ-------TDNLKYIEGDMFQF---IP-PSDAFFFKTV 82 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~-------~~~~~~~~~d~~~~---~~-~~D~v~~~~~ 82 (180)
.+..+|||||||+|.++..+++.+|+.+++++|++.+++.+++ ..++++..+|+.+. .| .||+|++..+
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~v 257 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQF 257 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEESC
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEech
Confidence 5678999999999999999999999999999999668877764 25799999999774 45 6999999999
Q ss_pred cccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhh-hhhhccceeeEeecCCcccCHHHHHHHHHHcCC
Q 030291 83 FHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELT-ESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGF 161 (180)
Q Consensus 83 l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 161 (180)
+|++++++..++|++++++|+| ||.+++.+...+......... ......+..+....+++.++.++|.++++++||
T Consensus 258 lh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf 334 (363)
T 3dp7_A 258 LDCFSEEEVISILTRVAQSIGK---DSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGL 334 (363)
T ss_dssp STTSCHHHHHHHHHHHHHHCCT---TCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTE
T ss_pred hhhCCHHHHHHHHHHHHHhcCC---CcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCC
Confidence 9999999888999999999999 999999998776554322110 001111111222344577899999999999999
Q ss_pred eEEEEeecCC-ceeEEEEeC
Q 030291 162 THYKIAPIFG-IKSLIEVYP 180 (180)
Q Consensus 162 ~~~~~~~~~~-~~~~~~~~~ 180 (180)
+++++....+ ..++++++|
T Consensus 335 ~~v~~~~~~g~~~svi~~~~ 354 (363)
T 3dp7_A 335 EVEEIQDNIGLGHSILQCRL 354 (363)
T ss_dssp EESCCCCCBTTTBEEEEEEE
T ss_pred eEEEEEeCCCCCceEEEEee
Confidence 9999986654 488888764
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.9e-24 Score=163.21 Aligned_cols=168 Identities=26% Similarity=0.419 Sum_probs=129.5
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCC-------CCCeeEEecCCcccCCC-cc
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ-------TDNLKYIEGDMFQFIPP-SD 75 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~-------~~~~~~~~~d~~~~~~~-~D 75 (180)
.+++.++ +++..+|||||||+|.++..+++.+|+.+++++|++.+++.+++ ..++++..+|+.++.+. ||
T Consensus 173 ~~~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D 250 (374)
T 1qzz_A 173 APADAYD--WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTAD 250 (374)
T ss_dssp HHHHTSC--CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEE
T ss_pred HHHHhCC--CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCCcCCCCCC
Confidence 3455555 67789999999999999999999999999999999548887764 24899999999765554 99
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe--eeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHH
Q 030291 76 AFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI--VIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWG 153 (180)
Q Consensus 76 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (180)
+|++..++||++++....++++++++|+| ||.+++.+. ..+..... ......+..+....+++.++.++|.
T Consensus 251 ~v~~~~vl~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (374)
T 1qzz_A 251 VVLLSFVLLNWSDEDALTILRGCVRALEP---GGRLLVLDRADVEGDGADR----FFSTLLDLRMLTFMGGRVRTRDEVV 323 (374)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEECCH-------H----HHHHHHHHHHHHHHSCCCCCHHHHH
T ss_pred EEEEeccccCCCHHHHHHHHHHHHHhcCC---CcEEEEEechhhcCCCCCc----chhhhcchHHHHhCCCcCCCHHHHH
Confidence 99999999999999878899999999999 999999987 54332211 1111222222222345778999999
Q ss_pred HHHHHcCCeEEEEeecCCce-----eEEEEeC
Q 030291 154 SLFVNAGFTHYKIAPIFGIK-----SLIEVYP 180 (180)
Q Consensus 154 ~~l~~aGf~~~~~~~~~~~~-----~~~~~~~ 180 (180)
++++++||+++++....+.. ++++++|
T Consensus 324 ~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (374)
T 1qzz_A 324 DLAGSAGLALASERTSGSTTLPFDFSILEFTA 355 (374)
T ss_dssp HHHHTTTEEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred HHHHHCCCceEEEEECCCCcccCCcEEEEEEE
Confidence 99999999999999887766 7887753
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=8.6e-24 Score=161.57 Aligned_cols=167 Identities=28% Similarity=0.517 Sum_probs=130.9
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCC-------CCCeeEEecCCcccCC-CccE
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ-------TDNLKYIEGDMFQFIP-PSDA 76 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~-------~~~~~~~~~d~~~~~~-~~D~ 76 (180)
+++.++ +++..+|||||||+|.++..+++.+|+.+++++|++.+++.+++ ..++++..+|+.++.+ .||+
T Consensus 175 l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~ 252 (360)
T 1tw3_A 175 PAAAYD--WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADA 252 (360)
T ss_dssp HHHHSC--CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEE
T ss_pred HHHhCC--CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCCCCCCCccE
Confidence 445555 67788999999999999999999999999999999557777764 2489999999977555 4999
Q ss_pred EEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee-eCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHH
Q 030291 77 FFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV-IDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSL 155 (180)
Q Consensus 77 v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (180)
|++..++|+++++....++++++++|+| ||.+++.+.. .++..... .....+..+....+++.++.++|.++
T Consensus 253 v~~~~vl~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~t~~e~~~l 325 (360)
T 1tw3_A 253 IILSFVLLNWPDHDAVRILTRCAEALEP---GGRILIHERDDLHENSFNE----QFTELDLRMLVFLGGALRTREKWDGL 325 (360)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHTEEE---EEEEEEEECCBCGGGCCSH----HHHHHHHHHHHHHSCCCCBHHHHHHH
T ss_pred EEEcccccCCCHHHHHHHHHHHHHhcCC---CcEEEEEEEeccCCCCCcc----hhhhccHHHhhhcCCcCCCHHHHHHH
Confidence 9999999999998877899999999999 9999999877 44322111 11112222222234577899999999
Q ss_pred HHHcCCeEEEEeecCCc-----eeEEEEeC
Q 030291 156 FVNAGFTHYKIAPIFGI-----KSLIEVYP 180 (180)
Q Consensus 156 l~~aGf~~~~~~~~~~~-----~~~~~~~~ 180 (180)
++++||+++++....+. .++++++|
T Consensus 326 l~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (360)
T 1tw3_A 326 AASAGLVVEEVRQLPSPTIPYDLSLLVLAP 355 (360)
T ss_dssp HHHTTEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred HHHCCCeEEEEEeCCCCcccCccEEEEEEe
Confidence 99999999999887665 77888764
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-23 Score=159.68 Aligned_cols=166 Identities=16% Similarity=0.327 Sum_probs=129.0
Q ss_pred cccccccccccC-CCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCC-------CCCeeEEecCCccc---CC
Q 030291 4 LLVKDCRPIFQG-LRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ-------TDNLKYIEGDMFQF---IP 72 (180)
Q Consensus 4 ~l~~~~~~~~~~-~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~-------~~~~~~~~~d~~~~---~~ 72 (180)
.+++.++ +.+ ..+|||||||+|.++..+++.+|+.+++++|++.+++.+++ ..++++..+|+.+. .+
T Consensus 169 ~~l~~~~--~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 246 (352)
T 3mcz_A 169 DVVSELG--VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEG 246 (352)
T ss_dssp HHHHTCG--GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTT
T ss_pred HHHHhCC--CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCC
Confidence 4566666 566 89999999999999999999999999999999767777764 35799999999764 44
Q ss_pred -CccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEee-cCCcccCHH
Q 030291 73 -PSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFN-VGGKERTEQ 150 (180)
Q Consensus 73 -~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 150 (180)
.||+|++..++||++++....+|++++++|+| ||.+++.+...++..... ......+..+... .+++.++.+
T Consensus 247 ~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~t~~ 320 (352)
T 3mcz_A 247 GAADVVMLNDCLHYFDAREAREVIGHAAGLVKP---GGALLILTMTMNDDRVTP---ALSADFSLHMMVNTNHGELHPTP 320 (352)
T ss_dssp CCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEE---EEEEEEEEECCCTTSSSS---HHHHHHHHHHHHHSTTCCCCCHH
T ss_pred CCccEEEEecccccCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCCCC---chHHHhhHHHHhhCCCCCcCCHH
Confidence 49999999999999998888999999999999 999999998776653321 1112222222221 245778999
Q ss_pred HHHHHHHHcCCeEEEEeecCCceeEEEEe
Q 030291 151 EWGSLFVNAGFTHYKIAPIFGIKSLIEVY 179 (180)
Q Consensus 151 ~~~~~l~~aGf~~~~~~~~~~~~~~~~~~ 179 (180)
+|.++++++||++++.. . +...++.++
T Consensus 321 e~~~ll~~aGf~~~~~~-~-g~~~l~~a~ 347 (352)
T 3mcz_A 321 WIAGVVRDAGLAVGERS-I-GRYTLLIGQ 347 (352)
T ss_dssp HHHHHHHHTTCEEEEEE-E-TTEEEEEEE
T ss_pred HHHHHHHHCCCceeeec-c-CceEEEEEe
Confidence 99999999999999843 3 445555544
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.6e-23 Score=156.01 Aligned_cols=166 Identities=21% Similarity=0.343 Sum_probs=128.9
Q ss_pred ccccccccc--cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCC-------CCCeeEEecCCcc-cCC-C
Q 030291 5 LVKDCRPIF--QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ-------TDNLKYIEGDMFQ-FIP-P 73 (180)
Q Consensus 5 l~~~~~~~~--~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~-------~~~~~~~~~d~~~-~~~-~ 73 (180)
+++.++ . .+..+|||||||+|.++..+++.+|+.+++++|++.+++.+++ ..++++..+|+.+ +.+ .
T Consensus 155 ~~~~~~--~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 232 (335)
T 2r3s_A 155 IAQLVN--ENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGND 232 (335)
T ss_dssp HHHHHT--C--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSC
T ss_pred HHHhcc--cccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCC
Confidence 344454 4 6788999999999999999999999999999999877777764 3479999999976 444 4
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEee-cCCcccCHHHH
Q 030291 74 SDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFN-VGGKERTEQEW 152 (180)
Q Consensus 74 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 152 (180)
||+|++..++||++++...+++++++++|+| ||.+++.+...+...... ......+..+... .+++.++.++|
T Consensus 233 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~t~~~~ 306 (335)
T 2r3s_A 233 YDLVLLPNFLHHFDVATCEQLLRKIKTALAV---EGKVIVFDFIPNSDRITP---PDAAAFSLVMLATTPNGDAYTFAEY 306 (335)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEECCCCTTSSCS---HHHHHHHHHHHHHSSSCCCCCHHHH
T ss_pred CcEEEEcchhccCCHHHHHHHHHHHHHhCCC---CcEEEEEeecCCCCcCCc---hHHHHHHHHHHeeCCCCCcCCHHHH
Confidence 9999999999999988888999999999999 999999998766543221 1111122212111 24577899999
Q ss_pred HHHHHHcCCeEEEEeecCCceeEEEE
Q 030291 153 GSLFVNAGFTHYKIAPIFGIKSLIEV 178 (180)
Q Consensus 153 ~~~l~~aGf~~~~~~~~~~~~~~~~~ 178 (180)
.++++++||+++++....+..+++.+
T Consensus 307 ~~ll~~aGf~~~~~~~~~~~~~~i~~ 332 (335)
T 2r3s_A 307 ESMFSNAGFSHSQLHSLPTTQQQVIV 332 (335)
T ss_dssp HHHHHHTTCSEEEEECCTTSSSEEEE
T ss_pred HHHHHHCCCCeeeEEECCCCceeEEE
Confidence 99999999999999888776565544
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.2e-22 Score=153.75 Aligned_cols=166 Identities=23% Similarity=0.443 Sum_probs=129.3
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCC-------CCCeeEEecCCcc-cCCCcc
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ-------TDNLKYIEGDMFQ-FIPPSD 75 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~-------~~~~~~~~~d~~~-~~~~~D 75 (180)
.+++.++ +++..+|||||||+|.++..+++.+|+.+++++|++.+++.+++ ..++++..+|+.+ +.+.+|
T Consensus 181 ~l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D 258 (359)
T 1x19_A 181 LLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEAD 258 (359)
T ss_dssp HHHHHCC--CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCCS
T ss_pred HHHHhcC--CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCCC
Confidence 4555666 67889999999999999999999999999999999558887763 3469999999976 455679
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCc----ccCHHH
Q 030291 76 AFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGK----ERTEQE 151 (180)
Q Consensus 76 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 151 (180)
+|++..++|+++++...++|++++++|+| ||.+++.+...++..... .... ..... ...+++ +++.++
T Consensus 259 ~v~~~~vlh~~~d~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~-~~~~---~~~~~-~~~~g~~~~~~~t~~e 330 (359)
T 1x19_A 259 AVLFCRILYSANEQLSTIMCKKAFDAMRS---GGRLLILDMVIDDPENPN-FDYL---SHYIL-GAGMPFSVLGFKEQAR 330 (359)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHTTCCT---TCEEEEEEECCCCTTSCC-HHHH---HHHGG-GGGSSCCCCCCCCGGG
T ss_pred EEEEechhccCCHHHHHHHHHHHHHhcCC---CCEEEEEecccCCCCCch-HHHH---HHHHH-hcCCCCcccCCCCHHH
Confidence 99999999999997777999999999999 999999998766542111 1110 01000 011123 389999
Q ss_pred HHHHHHHcCCeEEEEeecCCceeEEEEeC
Q 030291 152 WGSLFVNAGFTHYKIAPIFGIKSLIEVYP 180 (180)
Q Consensus 152 ~~~~l~~aGf~~~~~~~~~~~~~~~~~~~ 180 (180)
|.++++++||+++++.... ..++++++|
T Consensus 331 ~~~ll~~aGf~~v~~~~~~-~~~vi~a~k 358 (359)
T 1x19_A 331 YKEILESLGYKDVTMVRKY-DHLLVQAVK 358 (359)
T ss_dssp HHHHHHHHTCEEEEEEEET-TEEEEEEEC
T ss_pred HHHHHHHCCCceEEEEecC-CceEEEEeC
Confidence 9999999999999998877 677777765
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.4e-22 Score=142.98 Aligned_cols=163 Identities=18% Similarity=0.202 Sum_probs=120.7
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----CCCeeEEecCCccc-C-CCccEEEecccccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----TDNLKYIEGDMFQF-I-PPSDAFFFKTVFHF 85 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----~~~~~~~~~d~~~~-~-~~~D~v~~~~~l~~ 85 (180)
..++.+|||||||+|.++..+++.+|+.+++++|+++ +++.+++ ..++++.++|+.+. . ..||+|++..+++|
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 121 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMVVSALSIHH 121 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEEEEEESCGGG
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceEEEEeCcccc
Confidence 3567899999999999999999999999999999965 8877764 34899999999662 2 46999999999999
Q ss_pred CChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhh-hhhh------ccc-----eeeEeecCCcccCHHHHH
Q 030291 86 FDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELT-ESKL------LFD-----IFMNFNVGGKERTEQEWG 153 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~-~~~~------~~~-----~~~~~~~~~~~~~~~~~~ 153 (180)
++++...+++++++++|+| ||.+++.+...+......... ..+. ... ...........++.+++.
T Consensus 122 ~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (234)
T 3dtn_A 122 LEDEDKKELYKRSYSILKE---SGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQL 198 (234)
T ss_dssp SCHHHHHHHHHHHHHHEEE---EEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCC---CcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHHHH
Confidence 9998877899999999999 999999987765442211000 0000 000 000001223557899999
Q ss_pred HHHHHcCCeEEEEeecCCceeEEEE
Q 030291 154 SLFVNAGFTHYKIAPIFGIKSLIEV 178 (180)
Q Consensus 154 ~~l~~aGf~~~~~~~~~~~~~~~~~ 178 (180)
++++++||+.+++.......+.+..
T Consensus 199 ~ll~~aGF~~v~~~~~~~~~~~~~~ 223 (234)
T 3dtn_A 199 NWLKEAGFRDVSCIYKYYQFAVMFG 223 (234)
T ss_dssp HHHHHTTCEEEEEEEEETTEEEEEE
T ss_pred HHHHHcCCCceeeeeeecceeEEEE
Confidence 9999999999998877555554443
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-21 Score=139.66 Aligned_cols=152 Identities=17% Similarity=0.214 Sum_probs=121.2
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCch-hhccCCC------CCCeeEEecCCcc-cC--CC
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ-FI--PP 73 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~-~~--~~ 73 (180)
+++.+. +.++.+|||+|||+|.++..+++.. |..+++++|+++ +++.+++ ..++++.++|+.+ +. ..
T Consensus 29 ~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 106 (219)
T 3dh0_A 29 VLKEFG--LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNT 106 (219)
T ss_dssp HHHHHT--CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSC
T ss_pred HHHHhC--CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCC
Confidence 444555 6778899999999999999999885 778999999965 8888764 2579999999965 22 35
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHH
Q 030291 74 SDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWG 153 (180)
Q Consensus 74 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (180)
||+|++..+++|+++.. .+++++.++|+| ||.+++.++......... .....++.+++.
T Consensus 107 fD~v~~~~~l~~~~~~~--~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~----------------~~~~~~~~~~~~ 165 (219)
T 3dh0_A 107 VDFIFMAFTFHELSEPL--KFLEELKRVAKP---FAYLAIIDWKKEERDKGP----------------PPEEVYSEWEVG 165 (219)
T ss_dssp EEEEEEESCGGGCSSHH--HHHHHHHHHEEE---EEEEEEEEECSSCCSSSC----------------CGGGSCCHHHHH
T ss_pred eeEEEeehhhhhcCCHH--HHHHHHHHHhCC---CeEEEEEEecccccccCC----------------chhcccCHHHHH
Confidence 99999999999998877 789999999999 999999886654432110 112456899999
Q ss_pred HHHHHcCCeEEEEeecCCceeEEEEe
Q 030291 154 SLFVNAGFTHYKIAPIFGIKSLIEVY 179 (180)
Q Consensus 154 ~~l~~aGf~~~~~~~~~~~~~~~~~~ 179 (180)
++++++||++++.....+....+.++
T Consensus 166 ~~l~~~Gf~~~~~~~~~~~~~~~~~~ 191 (219)
T 3dh0_A 166 LILEDAGIRVGRVVEVGKYCFGVYAM 191 (219)
T ss_dssp HHHHHTTCEEEEEEEETTTEEEEEEE
T ss_pred HHHHHCCCEEEEEEeeCCceEEEEEE
Confidence 99999999999998887766666554
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.3e-20 Score=131.95 Aligned_cols=150 Identities=18% Similarity=0.205 Sum_probs=109.2
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC--CCCeeEEecCCccc--CCCccEEEeccccccCC
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ--TDNLKYIEGDMFQF--IPPSDAFFFKTVFHFFD 87 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~--~~~~~~~~~d~~~~--~~~~D~v~~~~~l~~~~ 87 (180)
++++.+|||||||+|.++..+++. +.+++++|+++ +++.+++ ..++++.++|+.+. ...||+|++..+++|++
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~l~~~~ 121 (218)
T 3ou2_A 44 GNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVFFAHWLAHVP 121 (218)
T ss_dssp TTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEEEESCGGGSC
T ss_pred CCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEEEechhhcCC
Confidence 456679999999999999999998 67899999966 8888875 36899999999664 23699999999999999
Q ss_pred hHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeE-eec------CCcccCHHHHHHHHHHcC
Q 030291 88 DEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMN-FNV------GGKERTEQEWGSLFVNAG 160 (180)
Q Consensus 88 ~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~l~~aG 160 (180)
++....+++++.++|+| ||.+++.+...+.......+.. ........ ... ...+.+.+++.++++++|
T Consensus 122 ~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 196 (218)
T 3ou2_A 122 DDRFEAFWESVRSAVAP---GGVVEFVDVTDHERRLEQQDDS--EPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALG 196 (218)
T ss_dssp HHHHHHHHHHHHHHEEE---EEEEEEEEECCCC--------------CEEEEECTTSCEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCC---CeEEEEEeCCCCccccchhhhc--ccccceeeecCCcchhhHhhcCCCHHHHHHHHHHCC
Confidence 98677999999999999 9999998876633221110000 00000000 001 123569999999999999
Q ss_pred CeEEEEeec
Q 030291 161 FTHYKIAPI 169 (180)
Q Consensus 161 f~~~~~~~~ 169 (180)
|++......
T Consensus 197 f~v~~~~~~ 205 (218)
T 3ou2_A 197 WSCSVDEVH 205 (218)
T ss_dssp EEEEEEEEE
T ss_pred CEEEeeecc
Confidence 995544443
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-20 Score=137.23 Aligned_cols=153 Identities=19% Similarity=0.277 Sum_probs=117.8
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----CCCeeEEecCCcc-cC--CCcc
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----TDNLKYIEGDMFQ-FI--PPSD 75 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----~~~~~~~~~d~~~-~~--~~~D 75 (180)
.+++.+. ++++.+|||||||+|.++..+++.+ +.+++++|+++ +++.+++ ..++++.++|+.+ +. ..||
T Consensus 46 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD 122 (266)
T 3ujc_A 46 KILSDIE--LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFD 122 (266)
T ss_dssp HHTTTCC--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEE
T ss_pred HHHHhcC--CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEE
Confidence 4555665 6788899999999999999999987 77999999966 8877765 2689999999965 22 3699
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHH
Q 030291 76 AFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSL 155 (180)
Q Consensus 76 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (180)
+|++..+++|++......+++++.++|+| ||.+++.++.......... ...... ...+...++.+++.++
T Consensus 123 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~~ 192 (266)
T 3ujc_A 123 LIYSRDAILALSLENKNKLFQKCYKWLKP---TGTLLITDYCATEKENWDD--EFKEYV-----KQRKYTLITVEEYADI 192 (266)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEESCGGGCCH--HHHHHH-----HHHTCCCCCHHHHHHH
T ss_pred EEeHHHHHHhcChHHHHHHHHHHHHHcCC---CCEEEEEEeccCCcccchH--HHHHHH-----hcCCCCCCCHHHHHHH
Confidence 99999999999666666999999999999 9999999887655211100 000000 0123356789999999
Q ss_pred HHHcCCeEEEEeec
Q 030291 156 FVNAGFTHYKIAPI 169 (180)
Q Consensus 156 l~~aGf~~~~~~~~ 169 (180)
++++||++++....
T Consensus 193 l~~~Gf~~~~~~~~ 206 (266)
T 3ujc_A 193 LTACNFKNVVSKDL 206 (266)
T ss_dssp HHHTTCEEEEEEEC
T ss_pred HHHcCCeEEEEEeC
Confidence 99999999988755
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.7e-21 Score=137.31 Aligned_cols=159 Identities=15% Similarity=0.195 Sum_probs=114.2
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-C-CCeeEEecCCcc-cC-CCccEEEe
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-T-DNLKYIEGDMFQ-FI-PPSDAFFF 79 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-~-~~~~~~~~d~~~-~~-~~~D~v~~ 79 (180)
+++.+. ..++.+|||||||+|.++..+++. +.+++++|+++ +++.+++ . .++++.++|+.+ +. ..||+|++
T Consensus 37 ~l~~~~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 112 (220)
T 3hnr_A 37 ILEDVV--NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIVS 112 (220)
T ss_dssp HHHHHH--HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEEE
T ss_pred HHHHhh--ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEEE
Confidence 334444 457889999999999999999988 67899999966 8888775 2 489999999965 22 46999999
Q ss_pred ccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhcccee--eEeecCCcccCHHHHHHHHH
Q 030291 80 KTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIF--MNFNVGGKERTEQEWGSLFV 157 (180)
Q Consensus 80 ~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~ 157 (180)
..+++|++++....+|+++.++|+| ||.+++.++..................... ..........+.+++.++++
T Consensus 113 ~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 189 (220)
T 3hnr_A 113 TYAFHHLTDDEKNVAIAKYSQLLNK---GGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFE 189 (220)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHSCT---TCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHH
T ss_pred CcchhcCChHHHHHHHHHHHHhcCC---CCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHH
Confidence 9999999999865689999999999 999999986654332111000000000000 00001123458899999999
Q ss_pred HcCCeEEEEeecC
Q 030291 158 NAGFTHYKIAPIF 170 (180)
Q Consensus 158 ~aGf~~~~~~~~~ 170 (180)
++||+++......
T Consensus 190 ~aGf~v~~~~~~~ 202 (220)
T 3hnr_A 190 NNGFHVTFTRLNH 202 (220)
T ss_dssp HTTEEEEEEECSS
T ss_pred HCCCEEEEeeccc
Confidence 9999887776653
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.5e-21 Score=140.67 Aligned_cols=154 Identities=16% Similarity=0.156 Sum_probs=116.8
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcc-cC--C
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQ-FI--P 72 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~-~~--~ 72 (180)
.+++.+. +.++.+|||||||+|.++..+++.. +.+++++|+++ +++.+++ ..++++.++|+.+ +. .
T Consensus 52 ~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 128 (273)
T 3bus_A 52 EMIALLD--VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDA 128 (273)
T ss_dssp HHHHHSC--CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTT
T ss_pred HHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCC
Confidence 3445555 6778999999999999999999887 68999999966 8877764 3479999999965 32 3
Q ss_pred CccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHH
Q 030291 73 PSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEW 152 (180)
Q Consensus 73 ~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (180)
.||+|++..+++|+++.. .+++++.++|+| ||.+++.+...........-....... ....+...++.+++
T Consensus 129 ~fD~v~~~~~l~~~~~~~--~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 199 (273)
T 3bus_A 129 SFDAVWALESLHHMPDRG--RALREMARVLRP---GGTVAIADFVLLAPVEGAKKEAVDAFR----AGGGVLSLGGIDEY 199 (273)
T ss_dssp CEEEEEEESCTTTSSCHH--HHHHHHHTTEEE---EEEEEEEEEEESSCCCHHHHHHHHHHH----HHHTCCCCCCHHHH
T ss_pred CccEEEEechhhhCCCHH--HHHHHHHHHcCC---CeEEEEEEeeccCCCChhHHHHHHHHH----hhcCccCCCCHHHH
Confidence 699999999999999887 889999999999 999999988765433221000011110 01123456799999
Q ss_pred HHHHHHcCCeEEEEeec
Q 030291 153 GSLFVNAGFTHYKIAPI 169 (180)
Q Consensus 153 ~~~l~~aGf~~~~~~~~ 169 (180)
.++++++||+++++...
T Consensus 200 ~~~l~~aGf~~~~~~~~ 216 (273)
T 3bus_A 200 ESDVRQAELVVTSTVDI 216 (273)
T ss_dssp HHHHHHTTCEEEEEEEC
T ss_pred HHHHHHcCCeEEEEEEC
Confidence 99999999999887765
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-20 Score=136.19 Aligned_cols=143 Identities=17% Similarity=0.232 Sum_probs=110.8
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC---CCCeeEEecCCcc-cC--CCccEEEecccccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ---TDNLKYIEGDMFQ-FI--PPSDAFFFKTVFHF 85 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~---~~~~~~~~~d~~~-~~--~~~D~v~~~~~l~~ 85 (180)
++++.+|||||||+|.++..+++. +.+++++|+++ +++.+++ ..++++.++|+.+ +. ..||+|++..+++|
T Consensus 51 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 128 (242)
T 3l8d_A 51 VKKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEW 128 (242)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTS
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhh
Confidence 457889999999999999999988 66899999966 8887765 4789999999965 22 36999999999999
Q ss_pred CChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEEE
Q 030291 86 FDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYK 165 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 165 (180)
+++.. .+++++.++|+| ||.+++.+.......... ....... .......++.+++.++++++||++++
T Consensus 129 ~~~~~--~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~~---~~~~~~~----~~~~~~~~~~~~~~~~l~~~Gf~~~~ 196 (242)
T 3l8d_A 129 TEEPL--RALNEIKRVLKS---DGYACIAILGPTAKPREN---SYPRLYG----KDVVCNTMMPWEFEQLVKEQGFKVVD 196 (242)
T ss_dssp SSCHH--HHHHHHHHHEEE---EEEEEEEEECTTCGGGGG---GGGGGGT----CCCSSCCCCHHHHHHHHHHTTEEEEE
T ss_pred ccCHH--HHHHHHHHHhCC---CeEEEEEEcCCcchhhhh---hhhhhcc----ccccccCCCHHHHHHHHHHcCCEEEE
Confidence 99887 789999999999 898888876544332211 1111111 11233567899999999999999998
Q ss_pred Eeec
Q 030291 166 IAPI 169 (180)
Q Consensus 166 ~~~~ 169 (180)
....
T Consensus 197 ~~~~ 200 (242)
T 3l8d_A 197 GIGV 200 (242)
T ss_dssp EEEE
T ss_pred eecc
Confidence 7754
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.6e-22 Score=140.16 Aligned_cols=154 Identities=15% Similarity=0.158 Sum_probs=110.2
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcc-cC--CCccEEEecc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQ-FI--PPSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~-~~--~~~D~v~~~~ 81 (180)
.++. +|||||||+|.++..+++. ++.+++++|+++ +++.+++ ..++++.++|+.+ +. ..||+|++..
T Consensus 42 ~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 119 (219)
T 3dlc_A 42 ITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRG 119 (219)
T ss_dssp CCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEES
T ss_pred CCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEECc
Confidence 3444 9999999999999999998 688999999965 8887764 3589999999966 32 3699999999
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccc-eeeEeecCCcccCHHHHHHHHHHcC
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFD-IFMNFNVGGKERTEQEWGSLFVNAG 160 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~aG 160 (180)
+++|+++.. .+++++.++|+| ||.+++.+.................... .......+...++.+++.++++++|
T Consensus 120 ~l~~~~~~~--~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 194 (219)
T 3dlc_A 120 SVFFWEDVA--TAFREIYRILKS---GGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIG 194 (219)
T ss_dssp CGGGCSCHH--HHHHHHHHHEEE---EEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHT
T ss_pred hHhhccCHH--HHHHHHHHhCCC---CCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcC
Confidence 999998887 789999999999 8998887744332111100000000000 0000001224457899999999999
Q ss_pred CeEEEEeecCCce
Q 030291 161 FTHYKIAPIFGIK 173 (180)
Q Consensus 161 f~~~~~~~~~~~~ 173 (180)
|+.+++.......
T Consensus 195 f~~v~~~~~~~~~ 207 (219)
T 3dlc_A 195 ISSYEIILGDEGF 207 (219)
T ss_dssp CSSEEEEEETTEE
T ss_pred CCeEEEEecCCce
Confidence 9999888765543
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-20 Score=136.96 Aligned_cols=150 Identities=13% Similarity=0.152 Sum_probs=114.9
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCccc--CCC
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQF--IPP 73 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~--~~~ 73 (180)
.+++.+. ++++.+|||||||+|..+..+++.. +.+++++|+++ +++.+++ ..++++.++|+.+. ...
T Consensus 27 ~l~~~~~--~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 103 (256)
T 1nkv_A 27 TLGRVLR--MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEK 103 (256)
T ss_dssp HHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSC
T ss_pred HHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCCC
Confidence 3445555 6788899999999999999999987 67899999966 8888764 25899999999652 236
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHH
Q 030291 74 SDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWG 153 (180)
Q Consensus 74 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (180)
||+|++..+++|+++.. .+|++++++||| ||.+++.+...........+... .. .......++.+++.
T Consensus 104 fD~V~~~~~~~~~~~~~--~~l~~~~r~Lkp---gG~l~~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~~~~ 171 (256)
T 1nkv_A 104 CDVAACVGATWIAGGFA--GAEELLAQSLKP---GGIMLIGEPYWRQLPATEEIAQA---CG----VSSTSDFLTLPGLV 171 (256)
T ss_dssp EEEEEEESCGGGTSSSH--HHHHHHTTSEEE---EEEEEEEEEEETTCCSSHHHHHT---TT----CSCGGGSCCHHHHH
T ss_pred CCEEEECCChHhcCCHH--HHHHHHHHHcCC---CeEEEEecCcccCCCChHHHHHH---Hh----cccccccCCHHHHH
Confidence 99999999999999877 789999999999 99999988766544322111111 10 01112567899999
Q ss_pred HHHHHcCCeEEEEee
Q 030291 154 SLFVNAGFTHYKIAP 168 (180)
Q Consensus 154 ~~l~~aGf~~~~~~~ 168 (180)
++++++||+++++..
T Consensus 172 ~~l~~aGf~~~~~~~ 186 (256)
T 1nkv_A 172 GAFDDLGYDVVEMVL 186 (256)
T ss_dssp HHHHTTTBCCCEEEE
T ss_pred HHHHHCCCeeEEEEe
Confidence 999999999887653
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-20 Score=138.32 Aligned_cols=162 Identities=14% Similarity=0.083 Sum_probs=114.3
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-CCCeeEEecCCccc--CCCccEEEecc-ccccCC
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-TDNLKYIEGDMFQF--IPPSDAFFFKT-VFHFFD 87 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-~~~~~~~~~d~~~~--~~~~D~v~~~~-~l~~~~ 87 (180)
.+++.+|||||||+|.++..+++. +.+++++|+++ +++.+++ ..++++.++|+.+. ...||+|++.. +++|++
T Consensus 48 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~ 125 (263)
T 3pfg_A 48 SPKAASLLDVACGTGMHLRHLADS--FGTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLA 125 (263)
T ss_dssp CTTCCEEEEETCTTSHHHHHHTTT--SSEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSC
T ss_pred CCCCCcEEEeCCcCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcC
Confidence 356789999999999999999888 45799999966 8888876 56899999999652 23699999998 999997
Q ss_pred h-HHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhh------------hhh--------hccceeeEe------
Q 030291 88 D-EDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELT------------ESK--------LLFDIFMNF------ 140 (180)
Q Consensus 88 ~-~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~------------~~~--------~~~~~~~~~------ 140 (180)
+ .+...+++++.++|+| ||.+++.....+.......+. ..+ .........
T Consensus 126 ~~~~~~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (263)
T 3pfg_A 126 GQAELDAALERFAAHVLP---DGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRG 202 (263)
T ss_dssp HHHHHHHHHHHHHHTEEE---EEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTE
T ss_pred CHHHHHHHHHHHHHhcCC---CcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCc
Confidence 5 3455889999999999 888888543322211000000 000 000000000
Q ss_pred ------ecCCcccCHHHHHHHHHHcCCeEEEEeecCCceeEEEEe
Q 030291 141 ------NVGGKERTEQEWGSLFVNAGFTHYKIAPIFGIKSLIEVY 179 (180)
Q Consensus 141 ------~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~ 179 (180)
....+.++.++|.++|+++||+++++....+...++.++
T Consensus 203 ~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~ 247 (263)
T 3pfg_A 203 ITHHEESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGL 247 (263)
T ss_dssp EEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEE
T ss_pred EEEEEEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEe
Confidence 011355799999999999999999998777766666554
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-20 Score=137.66 Aligned_cols=152 Identities=16% Similarity=0.244 Sum_probs=113.1
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcc-cC--CCc
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ-FI--PPS 74 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~-~~--~~~ 74 (180)
+++.+. ..++.+|||||||+|.++..+++..+ +++++|+++ +++.+++ ..++++.++|+.+ +. ..|
T Consensus 29 l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~f 104 (260)
T 1vl5_A 29 LMQIAA--LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERF 104 (260)
T ss_dssp HHHHHT--CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCE
T ss_pred HHHHhC--CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCCE
Confidence 445555 56788999999999999999998853 899999966 8888764 2579999999965 33 369
Q ss_pred cEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHH
Q 030291 75 DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGS 154 (180)
Q Consensus 75 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (180)
|+|+++.++||+++.. .++++++++|+| ||.+++.+...+...... ......... ....+...++.++|.+
T Consensus 105 D~V~~~~~l~~~~d~~--~~l~~~~r~Lkp---gG~l~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~ 175 (260)
T 1vl5_A 105 HIVTCRIAAHHFPNPA--SFVSEAYRVLKK---GGQLLLVDNSAPENDAFD---VFYNYVEKE-RDYSHHRAWKKSDWLK 175 (260)
T ss_dssp EEEEEESCGGGCSCHH--HHHHHHHHHEEE---EEEEEEEEEEBCSSHHHH---HHHHHHHHH-HCTTCCCCCBHHHHHH
T ss_pred EEEEEhhhhHhcCCHH--HHHHHHHHHcCC---CCEEEEEEcCCCCCHHHH---HHHHHHHHh-cCccccCCCCHHHHHH
Confidence 9999999999999887 789999999999 999999887655432111 111000000 0011235678999999
Q ss_pred HHHHcCCeEEEEeec
Q 030291 155 LFVNAGFTHYKIAPI 169 (180)
Q Consensus 155 ~l~~aGf~~~~~~~~ 169 (180)
+++++||+++.+...
T Consensus 176 ~l~~aGf~~~~~~~~ 190 (260)
T 1vl5_A 176 MLEEAGFELEELHCF 190 (260)
T ss_dssp HHHHHTCEEEEEEEE
T ss_pred HHHHCCCeEEEEEEe
Confidence 999999998877654
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.6e-20 Score=131.36 Aligned_cols=139 Identities=15% Similarity=0.073 Sum_probs=109.9
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-CCCeeEEecCCcc-cC--CCccEEEeccccccCChH
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-TDNLKYIEGDMFQ-FI--PPSDAFFFKTVFHFFDDE 89 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-~~~~~~~~~d~~~-~~--~~~D~v~~~~~l~~~~~~ 89 (180)
.+.+|||+|||+|.++..+++. +.+++++|+++ +++.+++ ..++++.++|+.+ +. ..||+|++..+++|++..
T Consensus 41 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~ 118 (203)
T 3h2b_A 41 VDGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPG 118 (203)
T ss_dssp CCSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTT
T ss_pred CCCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHH
Confidence 4789999999999999999988 56899999966 8888876 6789999999965 22 369999999999999855
Q ss_pred HHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEEEEeec
Q 030291 90 DCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPI 169 (180)
Q Consensus 90 ~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 169 (180)
....+++++.++|+| ||.+++.......... ..........++.+++.++++++||+++++...
T Consensus 119 ~~~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 182 (203)
T 3h2b_A 119 ELPDALVALRMAVED---GGGLLMSFFSGPSLEP-------------MYHPVATAYRWPLPELAQALETAGFQVTSSHWD 182 (203)
T ss_dssp THHHHHHHHHHTEEE---EEEEEEEEECCSSCEE-------------ECCSSSCEEECCHHHHHHHHHHTTEEEEEEEEC
T ss_pred HHHHHHHHHHHHcCC---CcEEEEEEccCCchhh-------------hhchhhhhccCCHHHHHHHHHHCCCcEEEEEec
Confidence 555899999999999 8888888765433110 000011224578999999999999999988876
Q ss_pred CC
Q 030291 170 FG 171 (180)
Q Consensus 170 ~~ 171 (180)
.+
T Consensus 183 ~~ 184 (203)
T 3h2b_A 183 PR 184 (203)
T ss_dssp TT
T ss_pred CC
Confidence 44
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.83 E-value=3.8e-20 Score=134.68 Aligned_cols=148 Identities=16% Similarity=0.240 Sum_probs=112.6
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----CCCeeEEecCCcc-cC--CCccE
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----TDNLKYIEGDMFQ-FI--PPSDA 76 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----~~~~~~~~~d~~~-~~--~~~D~ 76 (180)
+++.+. ..++.+|||||||+|.++..+++.. ..+++++|+++ +++.+++ ..++++.++|+.+ +. ..||+
T Consensus 85 ~l~~l~--~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 161 (254)
T 1xtp_A 85 FIASLP--GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDL 161 (254)
T ss_dssp HHHTST--TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEE
T ss_pred HHHhhc--ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeEE
Confidence 344444 5678899999999999999998886 55799999966 8887765 2579999999855 22 36999
Q ss_pred EEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHH
Q 030291 77 FFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLF 156 (180)
Q Consensus 77 v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 156 (180)
|++..+++|+++.....+++++.++|+| ||.+++.+........ . .....+...++.+++.+++
T Consensus 162 v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~---------~----~~~~~~~~~~~~~~~~~~l 225 (254)
T 1xtp_A 162 IVIQWTAIYLTDADFVKFFKHCQQALTP---NGYIFFKENCSTGDRF---------L----VDKEDSSLTRSDIHYKRLF 225 (254)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEBC--CCE---------E----EETTTTEEEBCHHHHHHHH
T ss_pred EEEcchhhhCCHHHHHHHHHHHHHhcCC---CeEEEEEecCCCcccc---------e----ecccCCcccCCHHHHHHHH
Confidence 9999999999887677999999999999 8999998764322110 0 0001122346899999999
Q ss_pred HHcCCeEEEEeecCC
Q 030291 157 VNAGFTHYKIAPIFG 171 (180)
Q Consensus 157 ~~aGf~~~~~~~~~~ 171 (180)
+++||+++++.....
T Consensus 226 ~~aGf~~~~~~~~~~ 240 (254)
T 1xtp_A 226 NESGVRVVKEAFQEE 240 (254)
T ss_dssp HHHTCCEEEEEECTT
T ss_pred HHCCCEEEEeeecCC
Confidence 999999998876544
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.83 E-value=5e-20 Score=137.15 Aligned_cols=144 Identities=19% Similarity=0.286 Sum_probs=111.7
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcc-cC--CCccEEEecc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQ-FI--PPSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~-~~--~~~D~v~~~~ 81 (180)
+.++.+|||||||+|.++..+++.+ +.+++++|+++ +++.+++ ..++++.++|+.+ +. ..||+|++..
T Consensus 80 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 158 (297)
T 2o57_A 80 LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQD 158 (297)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecc
Confidence 5678899999999999999999886 56899999966 8887764 3679999999965 32 3699999999
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCC
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGF 161 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 161 (180)
+++|+++.. .++++++++|+| ||.+++.++.............. .... ......+.+++.++++++||
T Consensus 159 ~l~~~~~~~--~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~l~~aGf 226 (297)
T 2o57_A 159 AFLHSPDKL--KVFQECARVLKP---RGVMAITDPMKEDGIDKSSIQPI---LDRI----KLHDMGSLGLYRSLAKECGL 226 (297)
T ss_dssp CGGGCSCHH--HHHHHHHHHEEE---EEEEEEEEEEECTTCCGGGGHHH---HHHH----TCSSCCCHHHHHHHHHHTTE
T ss_pred hhhhcCCHH--HHHHHHHHHcCC---CeEEEEEEeccCCCCchHHHHHH---HHHh----cCCCCCCHHHHHHHHHHCCC
Confidence 999999976 889999999999 99999998876544322111111 1100 11134588999999999999
Q ss_pred eEEEEeec
Q 030291 162 THYKIAPI 169 (180)
Q Consensus 162 ~~~~~~~~ 169 (180)
+++++...
T Consensus 227 ~~~~~~~~ 234 (297)
T 2o57_A 227 VTLRTFSR 234 (297)
T ss_dssp EEEEEEEC
T ss_pred eEEEEEEC
Confidence 99988654
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.83 E-value=8.8e-21 Score=130.26 Aligned_cols=149 Identities=17% Similarity=0.193 Sum_probs=118.0
Q ss_pred ccccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-CCCeeEEecCCcc-cCCCccEEEe
Q 030291 3 TLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-TDNLKYIEGDMFQ-FIPPSDAFFF 79 (180)
Q Consensus 3 ~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-~~~~~~~~~d~~~-~~~~~D~v~~ 79 (180)
+.+++.+. ..++.+|||+|||+|.++..+++.. .+++++|+++ +++.+++ ..++++.++| .. ....||+|++
T Consensus 7 ~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~v~~~~~d-~~~~~~~~D~v~~ 81 (170)
T 3i9f_A 7 EEYLPNIF--EGKKGVIVDYGCGNGFYCKYLLEFA--TKLYCIDINVIALKEVKEKFDSVITLSDP-KEIPDNSVDFILF 81 (170)
T ss_dssp TTTHHHHH--SSCCEEEEEETCTTCTTHHHHHTTE--EEEEEECSCHHHHHHHHHHCTTSEEESSG-GGSCTTCEEEEEE
T ss_pred HHHHHhcC--cCCCCeEEEECCCCCHHHHHHHhhc--CeEEEEeCCHHHHHHHHHhCCCcEEEeCC-CCCCCCceEEEEE
Confidence 44566666 6788899999999999999999886 3899999965 8888775 6789999999 33 3346999999
Q ss_pred ccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHc
Q 030291 80 KTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNA 159 (180)
Q Consensus 80 ~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 159 (180)
..+++|+++.. .+++++.++|+| ||.+++.++......... .....++.+++.++++
T Consensus 82 ~~~l~~~~~~~--~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~l~-- 138 (170)
T 3i9f_A 82 ANSFHDMDDKQ--HVISEVKRILKD---DGRVIIIDWRKENTGIGP----------------PLSIRMDEKDYMGWFS-- 138 (170)
T ss_dssp ESCSTTCSCHH--HHHHHHHHHEEE---EEEEEEEEECSSCCSSSS----------------CGGGCCCHHHHHHHTT--
T ss_pred ccchhcccCHH--HHHHHHHHhcCC---CCEEEEEEcCccccccCc----------------hHhhhcCHHHHHHHHh--
Confidence 99999998877 789999999999 999999887654332110 1123468999999999
Q ss_pred CCeEEEEeecCCceeEEEEe
Q 030291 160 GFTHYKIAPIFGIKSLIEVY 179 (180)
Q Consensus 160 Gf~~~~~~~~~~~~~~~~~~ 179 (180)
||++++..........+.+.
T Consensus 139 Gf~~~~~~~~~~~~~~l~~~ 158 (170)
T 3i9f_A 139 NFVVEKRFNPTPYHFGLVLK 158 (170)
T ss_dssp TEEEEEEECSSTTEEEEEEE
T ss_pred CcEEEEccCCCCceEEEEEe
Confidence 99999999888766665543
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.6e-20 Score=137.31 Aligned_cols=157 Identities=17% Similarity=0.175 Sum_probs=115.4
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccCCCccE
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFIPPSDA 76 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~~~~D~ 76 (180)
+++.+. ++++.+|||||||+|.++..+++.. +.+++++|+++ +++.+++ ..++++.++|+.+..+.||+
T Consensus 56 ~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~fD~ 132 (287)
T 1kpg_A 56 ALGKLG--LQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVDR 132 (287)
T ss_dssp HHTTTT--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCSE
T ss_pred HHHHcC--CCCcCEEEEECCcccHHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCeeE
Confidence 445555 6778899999999999999998665 55999999965 8877764 25899999999553357999
Q ss_pred EEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCc--------hhhhhhhhccceeeEeecCCcccC
Q 030291 77 FFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDD--------RELTESKLLFDIFMNFNVGGKERT 148 (180)
Q Consensus 77 v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 148 (180)
|++..+++|+++.....+++++.++|+| ||.+++.+......... ........... .....++...+
T Consensus 133 v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~s 207 (287)
T 1kpg_A 133 IVSIGAFEHFGHERYDAFFSLAHRLLPA---DGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIV--TEIFPGGRLPS 207 (287)
T ss_dssp EEEESCGGGTCTTTHHHHHHHHHHHSCT---TCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHH--HHTSTTCCCCC
T ss_pred EEEeCchhhcChHHHHHHHHHHHHhcCC---CCEEEEEEecCCCccccccccccccccccchhhhHH--heeCCCCCCCC
Confidence 9999999999655555889999999999 99999998876542110 00000000000 00112345679
Q ss_pred HHHHHHHHHHcCCeEEEEeec
Q 030291 149 EQEWGSLFVNAGFTHYKIAPI 169 (180)
Q Consensus 149 ~~~~~~~l~~aGf~~~~~~~~ 169 (180)
.+++.++++++||+++++...
T Consensus 208 ~~~~~~~l~~aGf~~~~~~~~ 228 (287)
T 1kpg_A 208 IPMVQECASANGFTVTRVQSL 228 (287)
T ss_dssp HHHHHHHHHTTTCEEEEEEEC
T ss_pred HHHHHHHHHhCCcEEEEEEeC
Confidence 999999999999999988764
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-19 Score=131.50 Aligned_cols=142 Identities=18% Similarity=0.250 Sum_probs=110.2
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcc---cC--CCccEEEeccccccC
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQ---FI--PPSDAFFFKTVFHFF 86 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~---~~--~~~D~v~~~~~l~~~ 86 (180)
++++.+|||||||+|.++..+++. +.+++++|+++ +++.+++. +++.++|..+ +. ..||+|++..+++|+
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~ 114 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHL 114 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSEEEEESCGGGS
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeEEEECCchhhC
Confidence 457789999999999999999888 56799999966 88888765 8888998855 22 369999999999999
Q ss_pred ChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEEEE
Q 030291 87 DDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKI 166 (180)
Q Consensus 87 ~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 166 (180)
+++....+++++.++|+| ||.+++..+..... . ...... ....+...++.+++.++++++||+++++
T Consensus 115 ~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~---~---~~~~~~----~~~~~~~~~~~~~l~~~l~~aGf~~~~~ 181 (240)
T 3dli_A 115 DPERLFELLSLCYSKMKY---SSYIVIESPNPTSL---Y---SLINFY----IDPTHKKPVHPETLKFILEYLGFRDVKI 181 (240)
T ss_dssp CGGGHHHHHHHHHHHBCT---TCCEEEEEECTTSH---H---HHHHHT----TSTTCCSCCCHHHHHHHHHHHTCEEEEE
T ss_pred CcHHHHHHHHHHHHHcCC---CcEEEEEeCCcchh---H---HHHHHh----cCccccccCCHHHHHHHHHHCCCeEEEE
Confidence 988666999999999999 99999877643221 1 111111 0112335678899999999999999988
Q ss_pred eecCC
Q 030291 167 APIFG 171 (180)
Q Consensus 167 ~~~~~ 171 (180)
.....
T Consensus 182 ~~~~~ 186 (240)
T 3dli_A 182 EFFEE 186 (240)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 76653
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.7e-20 Score=138.31 Aligned_cols=158 Identities=19% Similarity=0.240 Sum_probs=118.2
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccCCCccE
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFIPPSDA 76 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~~~~D~ 76 (180)
+++.+. ++++.+|||||||+|.++..+++.++ .+++++|+++ +++.+++ ..++++.++|+.+....||+
T Consensus 64 ~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD~ 140 (302)
T 3hem_A 64 ALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVDR 140 (302)
T ss_dssp HHHTTC--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCSE
T ss_pred HHHHcC--CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHcCCCccE
Confidence 455555 67888999999999999999999874 7899999966 8888864 24799999999665457999
Q ss_pred EEeccccccCCh-------HHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhh--------ccce-eeEe
Q 030291 77 FFFKTVFHFFDD-------EDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKL--------LFDI-FMNF 140 (180)
Q Consensus 77 v~~~~~l~~~~~-------~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~--------~~~~-~~~~ 140 (180)
|++..+++|+++ .....+++++.++|+| ||.+++.+.......... .... ..+. ....
T Consensus 141 v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 214 (302)
T 3hem_A 141 IVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPD---DGRMLLHTITIPDKEEAQ---ELGLTSPMSLLRFIKFILTEI 214 (302)
T ss_dssp EEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCT---TCEEEEEEEECCCHHHHH---HHTCCCCHHHHHHHHHHHHHT
T ss_pred EEEcchHHhcCccccccchhHHHHHHHHHHHhcCC---CcEEEEEEEeccCccchh---hccccccccccchHHHHHHhc
Confidence 999999999955 3455899999999999 999999887665432110 0000 0000 0011
Q ss_pred ecCCcccCHHHHHHHHHHcCCeEEEEeecCC
Q 030291 141 NVGGKERTEQEWGSLFVNAGFTHYKIAPIFG 171 (180)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~ 171 (180)
..++...+.+++.++++++||+++++...+.
T Consensus 215 ~p~~~~~s~~~~~~~l~~aGf~~~~~~~~~~ 245 (302)
T 3hem_A 215 FPGGRLPRISQVDYYSSNAGWKVERYHRIGA 245 (302)
T ss_dssp CTTCCCCCHHHHHHHHHHHTCEEEEEEECGG
T ss_pred CCCCCCCCHHHHHHHHHhCCcEEEEEEeCch
Confidence 2334567899999999999999998876543
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.83 E-value=8.6e-20 Score=129.50 Aligned_cols=138 Identities=14% Similarity=0.122 Sum_probs=107.6
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCccc--CCCccEEEeccccccCChH
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQF--IPPSDAFFFKTVFHFFDDE 89 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~--~~~~D~v~~~~~l~~~~~~ 89 (180)
++++.+|||||||+|.++..+++. +.+++++|+++ +++.+++..++++.++|+.+. ...||+|++..+++|+++.
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~ 118 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPRD 118 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEECSCGGGSCHH
T ss_pred cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEecCchhhcCHH
Confidence 456889999999999999999988 66899999966 888887654778888888542 2369999999999999976
Q ss_pred HHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcC-CeEEEEee
Q 030291 90 DCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAG-FTHYKIAP 168 (180)
Q Consensus 90 ~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG-f~~~~~~~ 168 (180)
....++++++++|+| ||.+++........... ... .....++.+++.++++++| |+++++..
T Consensus 119 ~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~--------~~~------~~~~~~~~~~~~~~l~~aG~f~~~~~~~ 181 (211)
T 3e23_A 119 ELADVLKLIWRALKP---GGLFYASYKSGEGEGRD--------KLA------RYYNYPSEEWLRARYAEAGTWASVAVES 181 (211)
T ss_dssp HHHHHHHHHHHHEEE---EEEEEEEEECCSSCEEC--------TTS------CEECCCCHHHHHHHHHHHCCCSEEEEEE
T ss_pred HHHHHHHHHHHhcCC---CcEEEEEEcCCCccccc--------ccc------hhccCCCHHHHHHHHHhCCCcEEEEEEe
Confidence 667999999999999 88888875433221110 000 1124579999999999999 99988765
Q ss_pred c
Q 030291 169 I 169 (180)
Q Consensus 169 ~ 169 (180)
.
T Consensus 182 ~ 182 (211)
T 3e23_A 182 S 182 (211)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.9e-20 Score=135.70 Aligned_cols=154 Identities=12% Similarity=0.127 Sum_probs=111.2
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-CCCeeEEecCCccc--CCCccEEEe
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-TDNLKYIEGDMFQF--IPPSDAFFF 79 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-~~~~~~~~~d~~~~--~~~~D~v~~ 79 (180)
.+++.+. ..++.+|||||||+|.++..+++.+|+.+++++|+++ +++.+++ ..++++.++|+.+. ...||+|++
T Consensus 24 ~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 101 (259)
T 2p35_A 24 DLLAQVP--LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQKADLLYA 101 (259)
T ss_dssp HHHTTCC--CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCCCSSCEEEEEE
T ss_pred HHHHhcC--CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcCccCCcCEEEE
Confidence 3455555 5678899999999999999999998888999999966 8888875 57899999998652 235999999
Q ss_pred ccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhh---ccceeeE-eecCCcccCHHHHHHH
Q 030291 80 KTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKL---LFDIFMN-FNVGGKERTEQEWGSL 155 (180)
Q Consensus 80 ~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~ 155 (180)
+.++||+++.. .+++++.++|+| ||.+++..+..........+..... +...... ...+...++.+++.++
T Consensus 102 ~~~l~~~~~~~--~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (259)
T 2p35_A 102 NAVFQWVPDHL--AVLSQLMDQLES---GGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFNA 176 (259)
T ss_dssp ESCGGGSTTHH--HHHHHHGGGEEE---EEEEEEEEECCTTSHHHHHHHHHHHHSTTGGGC-------CCCCCHHHHHHH
T ss_pred eCchhhCCCHH--HHHHHHHHhcCC---CeEEEEEeCCCCCcHHHHHHHHHhcCcchHHHhccccccccCCCCHHHHHHH
Confidence 99999998877 789999999999 8988888754322111111111110 1111000 0123456799999999
Q ss_pred HHHcCCeEE
Q 030291 156 FVNAGFTHY 164 (180)
Q Consensus 156 l~~aGf~~~ 164 (180)
|+++||++.
T Consensus 177 l~~aGf~v~ 185 (259)
T 2p35_A 177 LSPKSSRVD 185 (259)
T ss_dssp HGGGEEEEE
T ss_pred HHhcCCceE
Confidence 999999743
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.4e-20 Score=131.93 Aligned_cols=134 Identities=11% Similarity=0.063 Sum_probs=104.0
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------------------CCCeeEEecCCcccC--
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------------------TDNLKYIEGDMFQFI-- 71 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------------------~~~~~~~~~d~~~~~-- 71 (180)
++++.+|||+|||+|..+..+++. +.+++++|+|+ |++.+++ ..++++.++|+.+..
T Consensus 20 ~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~ 97 (203)
T 1pjz_A 20 VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 97 (203)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc
Confidence 467889999999999999999998 66899999976 8888764 247899999996622
Q ss_pred --CCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCH
Q 030291 72 --PPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTE 149 (180)
Q Consensus 72 --~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
++||+|++..+++|++++....++++++++||| ||.+++.......... ......++.
T Consensus 98 ~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~Lkp---gG~~~l~~~~~~~~~~-----------------~~~~~~~~~ 157 (203)
T 1pjz_A 98 DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQ---ACSGLLITLEYDQALL-----------------EGPPFSVPQ 157 (203)
T ss_dssp HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCS---EEEEEEEEESSCSSSS-----------------SSCCCCCCH
T ss_pred cCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCC---CcEEEEEEEecCcccc-----------------CCCCCCCCH
Confidence 469999999999999988777899999999999 8886665543321100 001123578
Q ss_pred HHHHHHHHHcCCeEEEEeec
Q 030291 150 QEWGSLFVNAGFTHYKIAPI 169 (180)
Q Consensus 150 ~~~~~~l~~aGf~~~~~~~~ 169 (180)
+++.+++++ ||++..+...
T Consensus 158 ~el~~~~~~-gf~i~~~~~~ 176 (203)
T 1pjz_A 158 TWLHRVMSG-NWEVTKVGGQ 176 (203)
T ss_dssp HHHHHTSCS-SEEEEEEEES
T ss_pred HHHHHHhcC-CcEEEEeccc
Confidence 999999998 9998776543
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.2e-20 Score=137.64 Aligned_cols=150 Identities=17% Similarity=0.331 Sum_probs=111.9
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcc-cC--CCccEEEeccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ-FI--PPSDAFFFKTV 82 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~-~~--~~~D~v~~~~~ 82 (180)
++++.+|||||||+|.++..+++.+|+.+++++|+++ +++.+++ ..++++.+.|+.+ +. ..||+|+++.+
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence 4678899999999999999999999899999999965 8887764 3579999999965 22 36999999999
Q ss_pred cccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCC---Cchhhhhhh-hccceeeEeecCCcccCHHHHHHHHHH
Q 030291 83 FHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKE---DDRELTESK-LLFDIFMNFNVGGKERTEQEWGSLFVN 158 (180)
Q Consensus 83 l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~ 158 (180)
++|+++.. .+++++.++|+| ||.+++.+....... ......... .... .....+...++..++.++|++
T Consensus 115 l~~~~~~~--~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~ 187 (276)
T 3mgg_A 115 LEHLQSPE--EALKSLKKVLKP---GGTITVIEGDHGSCYFHPEGKKAIEAWNCLIR--VQAYMKGNSLVGRQIYPLLQE 187 (276)
T ss_dssp GGGCSCHH--HHHHHHHHHEEE---EEEEEEEEECGGGCEEESCCHHHHHHHHHHHH--HHHHTTCCTTGGGGHHHHHHH
T ss_pred hhhcCCHH--HHHHHHHHHcCC---CcEEEEEEcCCCCceECCCcHHHHHHHHHHHH--HHHhcCCCcchHHHHHHHHHH
Confidence 99999988 789999999999 899999876432211 000010110 0000 001123345677899999999
Q ss_pred cCCeEEEEeec
Q 030291 159 AGFTHYKIAPI 169 (180)
Q Consensus 159 aGf~~~~~~~~ 169 (180)
+||+++++...
T Consensus 188 aGf~~v~~~~~ 198 (276)
T 3mgg_A 188 SGFEKIRVEPR 198 (276)
T ss_dssp TTCEEEEEEEE
T ss_pred CCCCeEEEeeE
Confidence 99999887644
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-19 Score=132.45 Aligned_cols=143 Identities=15% Similarity=0.114 Sum_probs=111.1
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcc-cC--CCccEEEecc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQ-FI--PPSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~-~~--~~~D~v~~~~ 81 (180)
++++.+|||||||+|.++..+++. +..+++++|+++ +++.+++ ..++++.++|+.+ +. ..||+|++..
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~ 122 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEG 122 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESS
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcC
Confidence 567889999999999999999988 677999999966 8887764 3679999999965 22 3699999999
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCC
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGF 161 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 161 (180)
+++|+ +.. .+++++.++|+| ||.+++.+...............+. . ......+.+++.++++++||
T Consensus 123 ~~~~~-~~~--~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~l~~aGf 188 (267)
T 3kkz_A 123 AIYNI-GFE--RGLNEWRKYLKK---GGYLAVSECSWFTDERPAEINDFWM--D------AYPEIDTIPNQVAKIHKAGY 188 (267)
T ss_dssp CGGGT-CHH--HHHHHHGGGEEE---EEEEEEEEEEESSSCCCHHHHHHHH--H------HCTTCEEHHHHHHHHHHTTE
T ss_pred Cceec-CHH--HHHHHHHHHcCC---CCEEEEEEeeecCCCChHHHHHHHH--H------hCCCCCCHHHHHHHHHHCCC
Confidence 99999 554 789999999999 9999999887544433221111110 0 01245688999999999999
Q ss_pred eEEEEeecC
Q 030291 162 THYKIAPIF 170 (180)
Q Consensus 162 ~~~~~~~~~ 170 (180)
+++++...+
T Consensus 189 ~~v~~~~~~ 197 (267)
T 3kkz_A 189 LPVATFILP 197 (267)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEECC
Confidence 999887654
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.8e-20 Score=135.38 Aligned_cols=157 Identities=17% Similarity=0.137 Sum_probs=111.5
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-CCCeeEEecCCcc-cC-CCccEEEe
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-TDNLKYIEGDMFQ-FI-PPSDAFFF 79 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-~~~~~~~~~d~~~-~~-~~~D~v~~ 79 (180)
.+++.+. ..++.+|||||||+|.++..+++ ++.+++++|+++ +++.+++ ..++++.++|+.+ +. ..||+|++
T Consensus 48 ~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 123 (279)
T 3ccf_A 48 DLLQLLN--PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAVFS 123 (279)
T ss_dssp HHHHHHC--CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEEEE
T ss_pred HHHHHhC--CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEEEE
Confidence 3444554 56788999999999999999988 578999999966 8888775 4689999999855 22 36999999
Q ss_pred ccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCc-hhhhhhhhccce-eeEeecCCcccCHHHHHHHHH
Q 030291 80 KTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDD-RELTESKLLFDI-FMNFNVGGKERTEQEWGSLFV 157 (180)
Q Consensus 80 ~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~ 157 (180)
..+++|+++.. .++++++++|+| ||.+++........... ..+......... ..........++.+++.++++
T Consensus 124 ~~~l~~~~d~~--~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 198 (279)
T 3ccf_A 124 NAMLHWVKEPE--AAIASIHQALKS---GGRFVAEFGGKGNIKYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILE 198 (279)
T ss_dssp ESCGGGCSCHH--HHHHHHHHHEEE---EEEEEEEEECTTTTHHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHHH
T ss_pred cchhhhCcCHH--HHHHHHHHhcCC---CcEEEEEecCCcchHHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHHH
Confidence 99999999887 789999999999 88888876543221000 000000000000 000011224568999999999
Q ss_pred HcCCeEEEEeec
Q 030291 158 NAGFTHYKIAPI 169 (180)
Q Consensus 158 ~aGf~~~~~~~~ 169 (180)
++||+++++...
T Consensus 199 ~aGf~~~~~~~~ 210 (279)
T 3ccf_A 199 KQGFDVTYAALF 210 (279)
T ss_dssp HHTEEEEEEEEE
T ss_pred HcCCEEEEEEEe
Confidence 999999877644
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.82 E-value=7.4e-20 Score=133.25 Aligned_cols=152 Identities=16% Similarity=0.138 Sum_probs=107.2
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC---CCCeeEEecCCcc-cC--CCccEEEecccccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ---TDNLKYIEGDMFQ-FI--PPSDAFFFKTVFHF 85 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~---~~~~~~~~~d~~~-~~--~~~D~v~~~~~l~~ 85 (180)
..++.+|||||||+|.++..+++..+. +++++|+++ +++.+++ ..++++.++|+.+ +. ..||+|++..+++|
T Consensus 42 ~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 120 (253)
T 3g5l_A 42 DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHY 120 (253)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEESCGGG
T ss_pred ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEchhhhh
Confidence 346889999999999999999988543 899999966 8888765 4689999999965 22 36999999999999
Q ss_pred CChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCc--hh---------hhhhhhccceeeE--e----ecCCcccC
Q 030291 86 FDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDD--RE---------LTESKLLFDIFMN--F----NVGGKERT 148 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~--~~---------~~~~~~~~~~~~~--~----~~~~~~~~ 148 (180)
+++.. .++++++++|+| ||.+++........... .. ............. . ......++
T Consensus 121 ~~~~~--~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 195 (253)
T 3g5l_A 121 IASFD--DICKKVYINLKS---SGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKYHRT 195 (253)
T ss_dssp CSCHH--HHHHHHHHHEEE---EEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEEEECCC
T ss_pred hhhHH--HHHHHHHHHcCC---CcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCccEecC
Confidence 98877 889999999999 88888875432110000 00 0000000000000 0 01112349
Q ss_pred HHHHHHHHHHcCCeEEEEeecC
Q 030291 149 EQEWGSLFVNAGFTHYKIAPIF 170 (180)
Q Consensus 149 ~~~~~~~l~~aGf~~~~~~~~~ 170 (180)
.++|.++|+++||+++++....
T Consensus 196 ~~~~~~~l~~aGF~~~~~~e~~ 217 (253)
T 3g5l_A 196 VTTYIQTLLKNGFQINSVIEPE 217 (253)
T ss_dssp HHHHHHHHHHTTEEEEEEECCC
T ss_pred HHHHHHHHHHcCCeeeeeecCC
Confidence 9999999999999999987653
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.82 E-value=6.6e-20 Score=132.74 Aligned_cols=146 Identities=14% Similarity=0.158 Sum_probs=107.3
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC--CCCeeEEecCCcccC--CCccEEEeccccccCCh
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ--TDNLKYIEGDMFQFI--PPSDAFFFKTVFHFFDD 88 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~--~~~~~~~~~d~~~~~--~~~D~v~~~~~l~~~~~ 88 (180)
.++.+|||||||+|.++..+++..+ +++++|+++ +++.+++ ..++++.++|+.+.. ..||+|++..+++|+++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~ 118 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDD 118 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSS
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhcC
Confidence 4577899999999999999988854 699999976 8888775 228999999986532 36999999999999998
Q ss_pred HHHHHHHHHHH-HhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccc-ee-----eEeecCCcccCHHHHHHHHHHcCC
Q 030291 89 EDCLKLLKKCR-EAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFD-IF-----MNFNVGGKERTEQEWGSLFVNAGF 161 (180)
Q Consensus 89 ~~~~~~l~~~~-~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~l~~aGf 161 (180)
+. .+|+++. ++|+| ||.+++..+........ ......... .. .....+.+.++.+++.++++++||
T Consensus 119 ~~--~~l~~~~~~~Lkp---gG~l~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 191 (250)
T 2p7i_A 119 PV--ALLKRINDDWLAE---GGRLFLVCPNANAVSRQ--IAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGL 191 (250)
T ss_dssp HH--HHHHHHHHTTEEE---EEEEEEEEECTTCHHHH--HHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTC
T ss_pred HH--HHHHHHHHHhcCC---CCEEEEEcCChHHHHHH--HHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCC
Confidence 87 8899999 99999 89999987654321100 000000000 00 001122356799999999999999
Q ss_pred eEEEEee
Q 030291 162 THYKIAP 168 (180)
Q Consensus 162 ~~~~~~~ 168 (180)
++++...
T Consensus 192 ~~~~~~~ 198 (250)
T 2p7i_A 192 QVTYRSG 198 (250)
T ss_dssp EEEEEEE
T ss_pred eEEEEee
Confidence 9988764
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-19 Score=139.99 Aligned_cols=145 Identities=17% Similarity=0.249 Sum_probs=111.6
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCch-hhccCCCC--------------CCeeEEecCCcc-------
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPH-AVTDMPQT--------------DNLKYIEGDMFQ------- 69 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~-~~~~a~~~--------------~~~~~~~~d~~~------- 69 (180)
..++.+|||||||+|.++..+++.+ ++.+++++|+++ +++.+++. .++++.++|+.+
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 4578899999999999999999885 788999999966 88887642 689999999965
Q ss_pred cCC--CccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCccc
Q 030291 70 FIP--PSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKER 147 (180)
Q Consensus 70 ~~~--~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (180)
+.+ +||+|+++.+++|+++.. .++++++++||| ||.+++.+.......... ....... ........+
T Consensus 161 ~~~~~~fD~V~~~~~l~~~~d~~--~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~ 229 (383)
T 4fsd_A 161 GVPDSSVDIVISNCVCNLSTNKL--ALFKEIHRVLRD---GGELYFSDVYADRRLSEA-AQQDPIL-----YGECLGGAL 229 (383)
T ss_dssp CCCTTCEEEEEEESCGGGCSCHH--HHHHHHHHHEEE---EEEEEEEEEEESSCCCHH-HHHCHHH-----HHTTCTTCC
T ss_pred CCCCCCEEEEEEccchhcCCCHH--HHHHHHHHHcCC---CCEEEEEEeccccccCHh-HhhhHHH-----hhcccccCC
Confidence 222 699999999999999877 889999999999 999999887765433221 1110000 111123456
Q ss_pred CHHHHHHHHHHcCCeEEEEee
Q 030291 148 TEQEWGSLFVNAGFTHYKIAP 168 (180)
Q Consensus 148 ~~~~~~~~l~~aGf~~~~~~~ 168 (180)
+.++|.++++++||+.+++..
T Consensus 230 ~~~~~~~ll~~aGF~~v~~~~ 250 (383)
T 4fsd_A 230 YLEDFRRLVAEAGFRDVRLVS 250 (383)
T ss_dssp BHHHHHHHHHHTTCCCEEEEE
T ss_pred CHHHHHHHHHHCCCceEEEEe
Confidence 889999999999999886654
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=4.1e-19 Score=129.49 Aligned_cols=142 Identities=15% Similarity=0.128 Sum_probs=109.3
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcc-cC--CCccEEEecc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQ-FI--PPSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~-~~--~~~D~v~~~~ 81 (180)
++++.+|||||||+|.++..+++..+. +++++|+++ +++.+++ ..++++.++|+.+ +. ..||+|++..
T Consensus 44 ~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 122 (257)
T 3f4k_A 44 LTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEG 122 (257)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecC
Confidence 567789999999999999999999864 899999966 8887764 3459999999955 22 3699999999
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCC
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGF 161 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 161 (180)
+++|+ +.. .+++++.++|+| ||.+++.+...............+.. ......+.+++.++++++||
T Consensus 123 ~l~~~-~~~--~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~~aGf 188 (257)
T 3f4k_A 123 AIYNI-GFE--RGMNEWSKYLKK---GGFIAVSEASWFTSERPAEIEDFWMD--------AYPEISVIPTCIDKMERAGY 188 (257)
T ss_dssp CSCCC-CHH--HHHHHHHTTEEE---EEEEEEEEEEESSSCCCHHHHHHHHH--------HCTTCCBHHHHHHHHHHTTE
T ss_pred hHhhc-CHH--HHHHHHHHHcCC---CcEEEEEEeeccCCCChHHHHHHHHH--------hCCCCCCHHHHHHHHHHCCC
Confidence 99999 444 789999999999 99999998765443322211111111 01235688999999999999
Q ss_pred eEEEEeec
Q 030291 162 THYKIAPI 169 (180)
Q Consensus 162 ~~~~~~~~ 169 (180)
++++....
T Consensus 189 ~~v~~~~~ 196 (257)
T 3f4k_A 189 TPTAHFIL 196 (257)
T ss_dssp EEEEEEEC
T ss_pred eEEEEEEC
Confidence 99987655
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-19 Score=131.14 Aligned_cols=151 Identities=19% Similarity=0.284 Sum_probs=112.7
Q ss_pred cccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcc-cC--CCcc
Q 030291 6 VKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ-FI--PPSD 75 (180)
Q Consensus 6 ~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~-~~--~~~D 75 (180)
++.+. .+++.+|||||||+|.++..+++.. .+++++|+++ +++.+++ ..++++.++|+.+ +. ..||
T Consensus 14 ~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 89 (239)
T 1xxl_A 14 IKTAE--CRAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFD 89 (239)
T ss_dssp HHHHT--CCTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEE
T ss_pred HHHhC--cCCCCEEEEEccCcCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEE
Confidence 34445 6788999999999999999998885 4799999966 8887764 2679999999855 22 3599
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHH
Q 030291 76 AFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSL 155 (180)
Q Consensus 76 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (180)
+|++..+++|+++.. .+++++.++|+| ||.+++.+...+.... ........... ....+.+.++.++|.++
T Consensus 90 ~v~~~~~l~~~~~~~--~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~l 160 (239)
T 1xxl_A 90 IITCRYAAHHFSDVR--KAVREVARVLKQ---DGRFLLVDHYAPEDPV---LDEFVNHLNRL-RDPSHVRESSLSEWQAM 160 (239)
T ss_dssp EEEEESCGGGCSCHH--HHHHHHHHHEEE---EEEEEEEEECBCSSHH---HHHHHHHHHHH-HCTTCCCCCBHHHHHHH
T ss_pred EEEECCchhhccCHH--HHHHHHHHHcCC---CcEEEEEEcCCCCChh---HHHHHHHHHHh-ccccccCCCCHHHHHHH
Confidence 999999999999887 789999999999 9999998876554311 11111100000 00122356789999999
Q ss_pred HHHcCCeEEEEeec
Q 030291 156 FVNAGFTHYKIAPI 169 (180)
Q Consensus 156 l~~aGf~~~~~~~~ 169 (180)
++++||+++++...
T Consensus 161 l~~aGf~~~~~~~~ 174 (239)
T 1xxl_A 161 FSANQLAYQDIQKW 174 (239)
T ss_dssp HHHTTEEEEEEEEE
T ss_pred HHHCCCcEEEEEee
Confidence 99999998877654
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=6.8e-20 Score=137.76 Aligned_cols=160 Identities=18% Similarity=0.247 Sum_probs=116.3
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccCCCcc
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFIPPSD 75 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~~~~D 75 (180)
.+++.+. +.++.+|||||||+|.++..+++.+ +++++++|+++ +++.+++ ..++++.++|+.+....||
T Consensus 81 ~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD 157 (318)
T 2fk8_A 81 LNLDKLD--LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVD 157 (318)
T ss_dssp HHHTTSC--CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCS
T ss_pred HHHHhcC--CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCCcC
Confidence 3445555 6778899999999999999999886 66999999966 8887764 2569999999955445799
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCch----hhh-hhhhccce-eeEeecCCcccCH
Q 030291 76 AFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDR----ELT-ESKLLFDI-FMNFNVGGKERTE 149 (180)
Q Consensus 76 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~----~~~-~~~~~~~~-~~~~~~~~~~~~~ 149 (180)
+|++..+++|++++....+++++.++|+| ||.+++.++......... .+. ......+. ......++...+.
T Consensus 158 ~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 234 (318)
T 2fk8_A 158 RIVSIEAFEHFGHENYDDFFKRCFNIMPA---DGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPST 234 (318)
T ss_dssp EEEEESCGGGTCGGGHHHHHHHHHHHSCT---TCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCH
T ss_pred EEEEeChHHhcCHHHHHHHHHHHHHhcCC---CcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCH
Confidence 99999999999766566899999999999 999999888765421100 000 00000000 0001123456799
Q ss_pred HHHHHHHHHcCCeEEEEeec
Q 030291 150 QEWGSLFVNAGFTHYKIAPI 169 (180)
Q Consensus 150 ~~~~~~l~~aGf~~~~~~~~ 169 (180)
+++.++++++||+++++...
T Consensus 235 ~~~~~~l~~aGf~~~~~~~~ 254 (318)
T 2fk8_A 235 EMMVEHGEKAGFTVPEPLSL 254 (318)
T ss_dssp HHHHHHHHHTTCBCCCCEEC
T ss_pred HHHHHHHHhCCCEEEEEEec
Confidence 99999999999998876654
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.5e-20 Score=135.83 Aligned_cols=151 Identities=16% Similarity=0.176 Sum_probs=110.2
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccC----CCccEEEeccc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFI----PPSDAFFFKTV 82 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~----~~~D~v~~~~~ 82 (180)
++.+|||||||+|.++..+++. +.+++++|+++ +++.+++ ..++++.++|+.+.. ..||+|++..+
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 145 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAV 145 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESC
T ss_pred CCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECch
Confidence 4679999999999999999988 67899999966 8888875 168999999996532 36999999999
Q ss_pred cccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhh----h-hhhccceeeEeecCCcccCHHHHHHHHH
Q 030291 83 FHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELT----E-SKLLFDIFMNFNVGGKERTEQEWGSLFV 157 (180)
Q Consensus 83 l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 157 (180)
++|++++. .+++++.++|+| ||.+++............... . .................++.+++.++++
T Consensus 146 l~~~~~~~--~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 220 (285)
T 4htf_A 146 LEWVADPR--SVLQTLWSVLRP---GGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYLWLE 220 (285)
T ss_dssp GGGCSCHH--HHHHHHHHTEEE---EEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHHHHHHH
T ss_pred hhcccCHH--HHHHHHHHHcCC---CeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHHHHHHH
Confidence 99999887 789999999999 899888876543211000000 0 0000000011112335679999999999
Q ss_pred HcCCeEEEEeecCCc
Q 030291 158 NAGFTHYKIAPIFGI 172 (180)
Q Consensus 158 ~aGf~~~~~~~~~~~ 172 (180)
++||+++++.....+
T Consensus 221 ~aGf~v~~~~~~~~~ 235 (285)
T 4htf_A 221 EAGWQIMGKTGVRVF 235 (285)
T ss_dssp HTTCEEEEEEEESSS
T ss_pred HCCCceeeeeeEEEe
Confidence 999999988766443
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-19 Score=130.08 Aligned_cols=139 Identities=15% Similarity=0.243 Sum_probs=108.9
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCccc-C--CCccEEEeccccc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQF-I--PPSDAFFFKTVFH 84 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~-~--~~~D~v~~~~~l~ 84 (180)
++.+|||||||+|.++..+++.. ..+++++|+++ +++.+++ ..++++.++|+.+. . ..||+|++..+++
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 57899999999999999988876 56899999966 8887764 23588999998552 2 2599999999999
Q ss_pred cCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEE
Q 030291 85 FFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHY 164 (180)
Q Consensus 85 ~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 164 (180)
|++++....+++++.++|+| ||.+++.+...... . .++ ...+...++.+++.++++++||+++
T Consensus 158 ~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~--~--------~~~----~~~~~~~~~~~~~~~~l~~aGf~~~ 220 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSLRP---NGIIVIKDNMAQEG--V--------ILD----DVDSSVCRDLDVVRRIICSAGLSLL 220 (241)
T ss_dssp GSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEBSSS--E--------EEE----TTTTEEEEBHHHHHHHHHHTTCCEE
T ss_pred hCCHHHHHHHHHHHHHhcCC---CeEEEEEEccCCCc--c--------eec----ccCCcccCCHHHHHHHHHHcCCeEE
Confidence 99998777899999999999 99999988765431 0 000 0011123588999999999999999
Q ss_pred EEeecCC
Q 030291 165 KIAPIFG 171 (180)
Q Consensus 165 ~~~~~~~ 171 (180)
+.....+
T Consensus 221 ~~~~~~~ 227 (241)
T 2ex4_A 221 AEERQEN 227 (241)
T ss_dssp EEEECCS
T ss_pred EeeecCC
Confidence 8876543
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.9e-19 Score=127.21 Aligned_cols=162 Identities=17% Similarity=0.177 Sum_probs=113.6
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-CCCeeEEecCCccc-C-CCccEEEe-ccccccCCh
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-TDNLKYIEGDMFQF-I-PPSDAFFF-KTVFHFFDD 88 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-~~~~~~~~~d~~~~-~-~~~D~v~~-~~~l~~~~~ 88 (180)
+++.+|||+|||+|.++..+++.++ +++++|+++ +++.+++ ..++++.++|+.+. . ..||+|++ ..+++|+++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~ 116 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKT 116 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCS
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCC
Confidence 5678999999999999999999864 799999965 8888875 46799999999652 2 36999995 559999965
Q ss_pred -HHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhh--------------------hhhccceeeEee------
Q 030291 89 -EDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTE--------------------SKLLFDIFMNFN------ 141 (180)
Q Consensus 89 -~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~------ 141 (180)
.....+++++.++|+| ||.+++.+...+.......... ............
T Consensus 117 ~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (239)
T 3bxo_A 117 TEELGAAVASFAEHLEP---GGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKGV 193 (239)
T ss_dssp HHHHHHHHHHHHHTEEE---EEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhcCC---CeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEEecCCCcc
Confidence 4566899999999999 8888887654433211000000 000000000000
Q ss_pred ------cCCcccCHHHHHHHHHHcCCeEEEEeecCCceeEEEEeC
Q 030291 142 ------VGGKERTEQEWGSLFVNAGFTHYKIAPIFGIKSLIEVYP 180 (180)
Q Consensus 142 ------~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~ 180 (180)
...+.++.++|.++|+++||+++.+....+...++.++|
T Consensus 194 ~~~~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~~~~~~~~va~K 238 (239)
T 3bxo_A 194 RHFSDVHLITLFHQAEYEAAFTAAGLRVEYLEGGPSGRGLFVGVP 238 (239)
T ss_dssp EEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred eEEEEEEEeeecCHHHHHHHHHHCCCEEEEeEcCCCCceEEEEec
Confidence 112457999999999999998888877766666666553
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.80 E-value=3.6e-19 Score=127.37 Aligned_cols=162 Identities=14% Similarity=0.162 Sum_probs=113.2
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCcc-cC--CCccEEEecccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQ-FI--PPSDAFFFKTVF 83 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~-~~--~~~D~v~~~~~l 83 (180)
++++.+|||+|||+|.++..+++..+ +++++|+++ +++.+++ ..++++.++|+.+ +. ..||+|+++.++
T Consensus 36 ~~~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~ 113 (227)
T 1ve3_A 36 MKKRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSI 113 (227)
T ss_dssp CCSCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCG
T ss_pred cCCCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCch
Confidence 34578999999999999999988865 899999965 8887764 3789999999965 32 369999999996
Q ss_pred ccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCch--h-hhhhhhccceeeE---------e-ec-------C
Q 030291 84 HFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDR--E-LTESKLLFDIFMN---------F-NV-------G 143 (180)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~---------~-~~-------~ 143 (180)
++........+++++.++|+| ||.+++.+.......... . ............. . .. .
T Consensus 114 ~~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (227)
T 1ve3_A 114 VHFEPLELNQVFKEVRRVLKP---SGKFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVR 190 (227)
T ss_dssp GGCCHHHHHHHHHHHHHHEEE---EEEEEEEEECHHHHGGGCCC---------CCEEEEETTTTEEEEEC-----CCEEE
T ss_pred HhCCHHHHHHHHHHHHHHcCC---CcEEEEEecChHHHHHHHHhhhhcccceeecccccCccccEEEEEeccchhhheee
Confidence 666555556899999999999 899998876532211100 0 0000000000000 0 00 0
Q ss_pred CcccCHHHHHHHHHHcCCeEEEEeecCCceeEEEEeC
Q 030291 144 GKERTEQEWGSLFVNAGFTHYKIAPIFGIKSLIEVYP 180 (180)
Q Consensus 144 ~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~ 180 (180)
...+. .++.++++++||+.+++...+....+++++|
T Consensus 191 ~~~w~-~~~~~~l~~~GF~~v~~~~~~~~~~~i~~~~ 226 (227)
T 1ve3_A 191 FNVWG-KTGVELLAKLYFTKEAEEKVGNYSYLTVYNP 226 (227)
T ss_dssp EECCC-HHHHHHHHTTTEEEEEEEEETTTEEEEEEEE
T ss_pred hhhhc-hHHHHHHHHHhhhHHHHHHhCCceeEEeeCC
Confidence 01122 4789999999999999999988888999876
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.80 E-value=9.7e-20 Score=129.80 Aligned_cols=143 Identities=13% Similarity=0.070 Sum_probs=102.2
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCCC-----------CCeeEEecCCccc---CCCccEE
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQT-----------DNLKYIEGDMFQF---IPPSDAF 77 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~-----------~~~~~~~~d~~~~---~~~~D~v 77 (180)
..++.+|||||||+|.++..+++..+..+++++|+++ +++.+++. .++++.++|+... ...||+|
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v 106 (217)
T 3jwh_A 27 QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAA 106 (217)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEE
T ss_pred hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEE
Confidence 4567899999999999999999988778999999966 88877641 2799999998442 2369999
Q ss_pred EeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccce-eeEeecCCcccCHHHHH---
Q 030291 78 FFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDI-FMNFNVGGKERTEQEWG--- 153 (180)
Q Consensus 78 ~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--- 153 (180)
++..+++|++++....+++++.++|+| ||.+++... .... ........ ..........++.+++.
T Consensus 107 ~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (217)
T 3jwh_A 107 TVIEVIEHLDLSRLGAFERVLFEFAQP---KIVIVTTPN-IEYN-------VKFANLPAGKLRHKDHRFEWTRSQFQNWA 175 (217)
T ss_dssp EEESCGGGCCHHHHHHHHHHHHTTTCC---SEEEEEEEB-HHHH-------HHTC-----------CCSCBCHHHHHHHH
T ss_pred eeHHHHHcCCHHHHHHHHHHHHHHcCC---CEEEEEccC-cccc-------hhhcccccccccccccccccCHHHHHHHH
Confidence 999999999988777999999999999 775554432 1100 00000000 00011222446888888
Q ss_pred -HHHHHcCCeEEEE
Q 030291 154 -SLFVNAGFTHYKI 166 (180)
Q Consensus 154 -~~l~~aGf~~~~~ 166 (180)
++++++||++...
T Consensus 176 ~~~~~~~Gf~v~~~ 189 (217)
T 3jwh_A 176 NKITERFAYNVQFQ 189 (217)
T ss_dssp HHHHHHSSEEEEEC
T ss_pred HHHHHHcCceEEEE
Confidence 8999999987544
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-19 Score=134.23 Aligned_cols=153 Identities=14% Similarity=0.144 Sum_probs=110.0
Q ss_pred ccCCCeEEEeCCcccHHHHHHH-HHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCccc--CCCccEEEecc
Q 030291 13 FQGLRSMVDVGGGTGAFARIIS-EAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQF--IPPSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~-~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~--~~~~D~v~~~~ 81 (180)
++++.+|||||||+|..+..++ ...++.+++++|+++ +++.+++ ..++++.++|+.+. ...||+|+++.
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~ 195 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG 195 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence 5678899999999999999885 567789999999965 8887764 23599999999652 24699999999
Q ss_pred ccccCChHH-HHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchh------hhh-----hhhccceeeEeecCCcccCH
Q 030291 82 VFHFFDDED-CLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRE------LTE-----SKLLFDIFMNFNVGGKERTE 149 (180)
Q Consensus 82 ~l~~~~~~~-~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~------~~~-----~~~~~~~~~~~~~~~~~~~~ 149 (180)
+++|++++. ...+++++.++|+| ||.+++.+...+....... ... ....+... ........++.
T Consensus 196 ~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 271 (305)
T 3ocj_A 196 LNIYEPDDARVTELYRRFWQALKP---GGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRL-IQPRWNALRTH 271 (305)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHEEE---EEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHT-TCCSCCCCCCH
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCC---CeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHH-HhhhhhccCCH
Confidence 999997665 34589999999999 8999887765433221100 000 00000000 00001145799
Q ss_pred HHHHHHHHHcCCeEEEEeec
Q 030291 150 QEWGSLFVNAGFTHYKIAPI 169 (180)
Q Consensus 150 ~~~~~~l~~aGf~~~~~~~~ 169 (180)
+++.++++++||+++++...
T Consensus 272 ~~~~~~l~~aGF~~v~~~~~ 291 (305)
T 3ocj_A 272 AQTRAQLEEAGFTDLRFEDD 291 (305)
T ss_dssp HHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHCCCEEEEEEcc
Confidence 99999999999999998865
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.8e-19 Score=128.55 Aligned_cols=144 Identities=13% Similarity=0.125 Sum_probs=102.9
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCCC-----------CCeeEEecCCccc---CCCccEE
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQT-----------DNLKYIEGDMFQF---IPPSDAF 77 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~-----------~~~~~~~~d~~~~---~~~~D~v 77 (180)
..++.+|||||||+|.++..+++..+..+++++|+++ +++.+++. .++++.++|+... ...||+|
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V 106 (219)
T 3jwg_A 27 SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAA 106 (219)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEE
T ss_pred hcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEE
Confidence 3567899999999999999999988778999999966 88888641 2899999998442 2369999
Q ss_pred EeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHH----
Q 030291 78 FFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWG---- 153 (180)
Q Consensus 78 ~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 153 (180)
++..+++|++++....+++++.++|+| || +++............ . ..............++.+++.
T Consensus 107 ~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG-~~i~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~l~~~~~ 176 (219)
T 3jwg_A 107 TVIEVIEHLDENRLQAFEKVLFEFTRP---QT-VIVSTPNKEYNFHYG---N---LFEGNLRHRDHRFEWTRKEFQTWAV 176 (219)
T ss_dssp EEESCGGGCCHHHHHHHHHHHHTTTCC---SE-EEEEEEBGGGGGCCC---C---T-----GGGCCTTSBCHHHHHHHHH
T ss_pred EEHHHHHhCCHHHHHHHHHHHHHhhCC---CE-EEEEccchhhhhhhc---c---cCcccccccCceeeecHHHHHHHHH
Confidence 999999999988777999999999999 77 444443322110000 0 000000001122346888888
Q ss_pred HHHHHcCCeEEEE
Q 030291 154 SLFVNAGFTHYKI 166 (180)
Q Consensus 154 ~~l~~aGf~~~~~ 166 (180)
++++++||++...
T Consensus 177 ~l~~~~Gf~v~~~ 189 (219)
T 3jwg_A 177 KVAEKYGYSVRFL 189 (219)
T ss_dssp HHHHHHTEEEEEE
T ss_pred HHHHHCCcEEEEE
Confidence 8899999976554
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.1e-19 Score=130.05 Aligned_cols=149 Identities=12% Similarity=0.186 Sum_probs=110.8
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcc-cC--CCccEEEec
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQ-FI--PPSDAFFFK 80 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~-~~--~~~D~v~~~ 80 (180)
+++.+. ..++.+|||||||+|.++..+++ ++.+++++|+++ +++.+++..++++.++|+.+ +. ..||+|++.
T Consensus 26 l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 101 (261)
T 3ege_A 26 IINLLN--LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVISI 101 (261)
T ss_dssp HHHHHC--CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEEEE
T ss_pred HHHHhC--CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEEEc
Confidence 344444 56789999999999999999987 578999999976 99999887799999999965 32 369999999
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcC
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAG 160 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 160 (180)
.+++|+++.. .+++++.++|| ||.+++.+.......... .. ..... .....+..+.+.+++. +++++|
T Consensus 102 ~~l~~~~~~~--~~l~~~~~~Lk----gG~~~~~~~~~~~~~~~~-~~---~~~~~-~~~~~~~~~~~~~~~~-~l~~aG 169 (261)
T 3ege_A 102 LAIHHFSHLE--KSFQEMQRIIR----DGTIVLLTFDIRLAQRIW-LY---DYFPF-LWEDALRFLPLDEQIN-LLQENT 169 (261)
T ss_dssp SCGGGCSSHH--HHHHHHHHHBC----SSCEEEEEECGGGCCCCG-GG---GTCHH-HHHHHHTSCCHHHHHH-HHHHHH
T ss_pred chHhhccCHH--HHHHHHHHHhC----CcEEEEEEcCCchhHHHH-HH---HHHHH-HhhhhhhhCCCHHHHH-HHHHcC
Confidence 9999998887 88999999999 398888887543322110 00 00000 0001123455778888 999999
Q ss_pred CeEEEEeec
Q 030291 161 FTHYKIAPI 169 (180)
Q Consensus 161 f~~~~~~~~ 169 (180)
|+.+++...
T Consensus 170 F~~v~~~~~ 178 (261)
T 3ege_A 170 KRRVEAIPF 178 (261)
T ss_dssp CSEEEEEEC
T ss_pred CCceeEEEe
Confidence 998887654
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.5e-19 Score=129.11 Aligned_cols=132 Identities=17% Similarity=0.222 Sum_probs=105.0
Q ss_pred CCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccCC--CccEEEecccccc
Q 030291 16 LRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFIP--PSDAFFFKTVFHF 85 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~~--~~D~v~~~~~l~~ 85 (180)
+.+|||||||+|.++..+++ ++.+++++|+++ +++.+++ ..++++.++|+.+..+ .||+|++..+++|
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~ 144 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCA 144 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTT
T ss_pred CCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhc
Confidence 45999999999999998876 377899999966 8887764 2469999999976333 6999999999999
Q ss_pred CChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEEE
Q 030291 86 FDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYK 165 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 165 (180)
+++.....+++++.++|+| ||.+++.+........ .....++.+++.++++++||++++
T Consensus 145 ~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~------------------~~~~~~~~~~~~~~l~~~Gf~~~~ 203 (235)
T 3lcc_A 145 IEPEMRPAWAKSMYELLKP---DGELITLMYPITDHVG------------------GPPYKVDVSTFEEVLVPIGFKAVS 203 (235)
T ss_dssp SCGGGHHHHHHHHHHHEEE---EEEEEEEECCCSCCCS------------------CSSCCCCHHHHHHHHGGGTEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCC---CcEEEEEEecccccCC------------------CCCccCCHHHHHHHHHHcCCeEEE
Confidence 9966666999999999999 8988887754332111 011236889999999999999998
Q ss_pred EeecC
Q 030291 166 IAPIF 170 (180)
Q Consensus 166 ~~~~~ 170 (180)
+....
T Consensus 204 ~~~~~ 208 (235)
T 3lcc_A 204 VEENP 208 (235)
T ss_dssp EEECT
T ss_pred EEecC
Confidence 87653
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=7.9e-20 Score=136.00 Aligned_cols=156 Identities=15% Similarity=0.257 Sum_probs=107.8
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCCC-------------------------
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQT------------------------- 57 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~------------------------- 57 (180)
.+++.+...+..+.+|||||||+|.++..+++.++..+++++|+++ +++.|++.
T Consensus 35 ~~l~~l~~~~~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (292)
T 3g07_A 35 GRLRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGE 114 (292)
T ss_dssp GGGGTSCGGGTTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC------------------------
T ss_pred HHHHhhhhhhcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccc
Confidence 3444554334468899999999999999999999889999999966 77777531
Q ss_pred ---------------------------------------CCeeEEecCCccc--------CCCccEEEeccccccC----
Q 030291 58 ---------------------------------------DNLKYIEGDMFQF--------IPPSDAFFFKTVFHFF---- 86 (180)
Q Consensus 58 ---------------------------------------~~~~~~~~d~~~~--------~~~~D~v~~~~~l~~~---- 86 (180)
.++++.++|+... .+.||+|++..+++|+
T Consensus 115 ~~~~~~~~~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~ 194 (292)
T 3g07_A 115 EGTTTVRKRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNW 194 (292)
T ss_dssp ---------------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHH
T ss_pred cccccccccccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcC
Confidence 4899999999642 2469999999999887
Q ss_pred ChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHH--cCCeEE
Q 030291 87 DDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVN--AGFTHY 164 (180)
Q Consensus 87 ~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--aGf~~~ 164 (180)
.+.....++++++++|+| ||.+++....... +.......... ......-.+.++++.++|.+ +||+.+
T Consensus 195 ~~~~~~~~l~~~~~~Lkp---GG~lil~~~~~~~------y~~~~~~~~~~-~~~~~~~~~~p~~~~~~L~~~~~GF~~~ 264 (292)
T 3g07_A 195 GDEGLKRMFRRIYRHLRP---GGILVLEPQPWSS------YGKRKTLTETI-YKNYYRIQLKPEQFSSYLTSPDVGFSSY 264 (292)
T ss_dssp HHHHHHHHHHHHHHHEEE---EEEEEEECCCHHH------HHTTTTSCHHH-HHHHHHCCCCGGGHHHHHTSTTTCCCEE
T ss_pred CHHHHHHHHHHHHHHhCC---CcEEEEecCCchh------hhhhhcccHHH-HhhhhcEEEcHHHHHHHHHhcCCCceEE
Confidence 455666899999999999 7777774322110 10100000000 00000112357899999999 999888
Q ss_pred EEeec
Q 030291 165 KIAPI 169 (180)
Q Consensus 165 ~~~~~ 169 (180)
++...
T Consensus 265 ~~~~~ 269 (292)
T 3g07_A 265 ELVAT 269 (292)
T ss_dssp EEC--
T ss_pred EEecc
Confidence 77654
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.7e-19 Score=126.13 Aligned_cols=147 Identities=16% Similarity=0.100 Sum_probs=107.0
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCccc------CC-CccEEEeccccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQF------IP-PSDAFFFKTVFH 84 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~------~~-~~D~v~~~~~l~ 84 (180)
..++.+|||||||+|.++..+++. +.+++++|+++ +++.+++..++.+.+.|+.+. .. .||+|++..+++
T Consensus 50 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~ 127 (227)
T 3e8s_A 50 GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALL 127 (227)
T ss_dssp HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC
T ss_pred cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEEEECchhh
Confidence 456799999999999999999888 66899999966 888888777888888887442 12 499999999999
Q ss_pred cCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceee----EeecCCcccCHHHHHHHHHHcC
Q 030291 85 FFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFM----NFNVGGKERTEQEWGSLFVNAG 160 (180)
Q Consensus 85 ~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~aG 160 (180)
..+.. .++++++++|+| ||.+++.+.......... +...+....... ........++.++|.++++++|
T Consensus 128 -~~~~~--~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 200 (227)
T 3e8s_A 128 -HQDII--ELLSAMRTLLVP---GGALVIQTLHPWSVADGD-YQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAG 200 (227)
T ss_dssp -SSCCH--HHHHHHHHTEEE---EEEEEEEECCTTTTCTTC-CSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTT
T ss_pred -hhhHH--HHHHHHHHHhCC---CeEEEEEecCccccCccc-cccccchhhhhccccCcccceEEEecHHHHHHHHHHcC
Confidence 66666 789999999999 899998876554332110 000000000000 0011124569999999999999
Q ss_pred CeEEEEee
Q 030291 161 FTHYKIAP 168 (180)
Q Consensus 161 f~~~~~~~ 168 (180)
|+++++..
T Consensus 201 f~~~~~~~ 208 (227)
T 3e8s_A 201 LRLVSLQE 208 (227)
T ss_dssp EEEEEEEC
T ss_pred CeEEEEec
Confidence 99998875
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.79 E-value=9.1e-19 Score=125.79 Aligned_cols=151 Identities=12% Similarity=0.110 Sum_probs=108.7
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----------CCCeeEEecCCcc-c--CCCccEE
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----------TDNLKYIEGDMFQ-F--IPPSDAF 77 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----------~~~~~~~~~d~~~-~--~~~~D~v 77 (180)
++++.+|||+|||+|.++..+++. +.+++++|+++ +++.+++ ..++++.++|+.+ + ...||+|
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 105 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFA 105 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEE
Confidence 467889999999999999999988 67899999965 7777754 1257999999865 2 2369999
Q ss_pred EeccccccCChHH-HHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhh--h-hhhc--cceeeEe-------ecCC
Q 030291 78 FFKTVFHFFDDED-CLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELT--E-SKLL--FDIFMNF-------NVGG 144 (180)
Q Consensus 78 ~~~~~l~~~~~~~-~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~--~-~~~~--~~~~~~~-------~~~~ 144 (180)
++..+++|++++. ...+++++.++|+| ||.+++.+............. . .... ...+... ....
T Consensus 106 ~~~~~l~~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (235)
T 3sm3_A 106 VMQAFLTSVPDPKERSRIIKEVFRVLKP---GAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIA 182 (235)
T ss_dssp EEESCGGGCCCHHHHHHHHHHHHHHEEE---EEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEE
T ss_pred EEcchhhcCCCHHHHHHHHHHHHHHcCC---CeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceee
Confidence 9999999998754 55789999999999 999999887653322110000 0 0000 0000000 1112
Q ss_pred cccCHHHHHHHHHHcCCeEEEEee
Q 030291 145 KERTEQEWGSLFVNAGFTHYKIAP 168 (180)
Q Consensus 145 ~~~~~~~~~~~l~~aGf~~~~~~~ 168 (180)
+.++.+++.++++++||+++++..
T Consensus 183 ~~~~~~~l~~ll~~aGf~~~~~~~ 206 (235)
T 3sm3_A 183 HHFTEKELVFLLTDCRFEIDYFRV 206 (235)
T ss_dssp ECBCHHHHHHHHHTTTEEEEEEEE
T ss_pred EeCCHHHHHHHHHHcCCEEEEEEe
Confidence 467999999999999999988764
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.78 E-value=6.4e-19 Score=130.53 Aligned_cols=150 Identities=17% Similarity=0.248 Sum_probs=108.7
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCC-CCeEEEeeCch-hhccCCC-----CCCeeEEecCCcc-cC-CCccEEEecccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFP-GIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQ-FI-PPSDAFFFKTVF 83 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~-~~-~~~D~v~~~~~l 83 (180)
+.++.+|||||||+|.++..+++.+| +.+++++|+++ +++.+++ ..++++.++|+.+ +. .+||+|++..++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l 99 (284)
T 3gu3_A 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFL 99 (284)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCG
T ss_pred cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCeeEEEECChh
Confidence 56789999999999999999999987 48999999966 8877764 3489999999965 22 359999999999
Q ss_pred ccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeee-----C---CCCCchh---hhhhhhccceeeEeecCCcccCHHHH
Q 030291 84 HFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVI-----D---EKEDDRE---LTESKLLFDIFMNFNVGGKERTEQEW 152 (180)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~-----~---~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (180)
+|+++.. .++++++++|+| ||.+++.++.. . ....... .......+.. .....+....+.+++
T Consensus 100 ~~~~~~~--~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l 173 (284)
T 3gu3_A 100 LHMTTPE--TMLQKMIHSVKK---GGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFES-DTQRNGKDGNIGMKI 173 (284)
T ss_dssp GGCSSHH--HHHHHHHHTEEE---EEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHH-HHHHTCCCTTGGGTH
T ss_pred hcCCCHH--HHHHHHHHHcCC---CCEEEEEecchhcccccceecCcchhhccchHHHHHHHHH-HhhhhcccccHHHHH
Confidence 9999887 889999999999 99999988651 1 0000000 0000000000 000122344567789
Q ss_pred HHHHHHcCCeEEEEee
Q 030291 153 GSLFVNAGFTHYKIAP 168 (180)
Q Consensus 153 ~~~l~~aGf~~~~~~~ 168 (180)
.++++++||+.++...
T Consensus 174 ~~~l~~aGF~~v~~~~ 189 (284)
T 3gu3_A 174 PIYLSELGVKNIECRV 189 (284)
T ss_dssp HHHHHHTTCEEEEEEE
T ss_pred HHHHHHcCCCeEEEEE
Confidence 9999999999887743
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.8e-19 Score=133.30 Aligned_cols=151 Identities=17% Similarity=0.218 Sum_probs=107.1
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----C----CCeeEEecCCcc-c-CCCccEEEec-c
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----T----DNLKYIEGDMFQ-F-IPPSDAFFFK-T 81 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~----~~~~~~~~d~~~-~-~~~~D~v~~~-~ 81 (180)
.+.+|||||||+|.++..+++. +.+++++|+++ +++.+++ . .++++.++|+.+ + ...||+|++. .
T Consensus 82 ~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~ 159 (299)
T 3g2m_A 82 VSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALDKRFGTVVISSG 159 (299)
T ss_dssp CCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCCSCCEEEEEECHH
T ss_pred CCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCcCCCcCEEEECCc
Confidence 3459999999999999999988 56899999966 8888875 1 679999999966 2 2369998865 6
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCc-----hhhh-------hhhhccc-------ee-----
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDD-----RELT-------ESKLLFD-------IF----- 137 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~-----~~~~-------~~~~~~~-------~~----- 137 (180)
+++++++.....+|+++.++|+| ||.+++........... ..+. ....... ..
T Consensus 160 ~~~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 236 (299)
T 3g2m_A 160 SINELDEADRRGLYASVREHLEP---GGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAEEIQEITIHPAD 236 (299)
T ss_dssp HHTTSCHHHHHHHHHHHHHHEEE---EEEEEEEEECCHHHHSCCCCC-------------CCEEEEEEEEEEEEEEEESC
T ss_pred ccccCCHHHHHHHHHHHHHHcCC---CcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEeccccEEEEEEEecc
Confidence 78888877777999999999999 88888877654321000 0000 0000000 00
Q ss_pred ------eEeecCCcccCHHHHHHHHHHcCCeEEEEeecC
Q 030291 138 ------MNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIF 170 (180)
Q Consensus 138 ------~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 170 (180)
.......+.++.+++.++|+++||+++++....
T Consensus 237 ~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~ 275 (299)
T 3g2m_A 237 ETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFA 275 (299)
T ss_dssp C--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEEC
T ss_pred CCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecC
Confidence 000011245799999999999999999998764
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.4e-18 Score=129.02 Aligned_cols=144 Identities=12% Similarity=0.130 Sum_probs=109.6
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcc-cC--CCccEEEecc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQ-FI--PPSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~-~~--~~~D~v~~~~ 81 (180)
++++.+|||||||+|.++..+++.+ +.+++++|+++ +++.+++ ..++++.++|+.+ +. ..||+|++..
T Consensus 115 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 193 (312)
T 3vc1_A 115 AGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNE 193 (312)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEES
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECC
Confidence 4678899999999999999999886 67899999965 8888764 2579999999965 22 3699999999
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCC
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGF 161 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 161 (180)
+++|++ .. .+++++.++|+| ||.+++.+.......... .......... .....++.+++.++++++||
T Consensus 194 ~l~~~~-~~--~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~s~~~~~~~l~~aGf 261 (312)
T 3vc1_A 194 STMYVD-LH--DLFSEHSRFLKV---GGRYVTITGCWNPRYGQP--SKWVSQINAH----FECNIHSRREYLRAMADNRL 261 (312)
T ss_dssp CGGGSC-HH--HHHHHHHHHEEE---EEEEEEEEEEECTTTCSC--CHHHHHHHHH----HTCCCCBHHHHHHHHHTTTE
T ss_pred chhhCC-HH--HHHHHHHHHcCC---CcEEEEEEccccccccch--hHHHHHHHhh----hcCCCCCHHHHHHHHHHCCC
Confidence 999994 44 889999999999 999999887765533110 0000000000 01135689999999999999
Q ss_pred eEEEEeec
Q 030291 162 THYKIAPI 169 (180)
Q Consensus 162 ~~~~~~~~ 169 (180)
+++++...
T Consensus 262 ~~~~~~~~ 269 (312)
T 3vc1_A 262 VPHTIVDL 269 (312)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEeC
Confidence 99988765
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-18 Score=127.99 Aligned_cols=157 Identities=10% Similarity=0.102 Sum_probs=112.6
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCch-------hhccCCC-------CCCeeEEecC-Cc
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPH-------AVTDMPQ-------TDNLKYIEGD-MF 68 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~-------~~~~a~~-------~~~~~~~~~d-~~ 68 (180)
+++.+. ++++.+|||||||+|.++..+++.+ |..+++++|+++ +++.+++ ..++++.++| +.
T Consensus 35 l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 112 (275)
T 3bkx_A 35 IAEAWQ--VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLS 112 (275)
T ss_dssp HHHHHT--CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTT
T ss_pred HHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhh
Confidence 444555 6788999999999999999999885 668999999954 6666653 2579999998 42
Q ss_pred c---c--CCCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhh-----hhccceee
Q 030291 69 Q---F--IPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTES-----KLLFDIFM 138 (180)
Q Consensus 69 ~---~--~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 138 (180)
. + ...||+|++..+++|++++. .+++.++++++| ||.+++.+.......... .... ........
T Consensus 113 ~~~~~~~~~~fD~v~~~~~l~~~~~~~--~~~~~~~~l~~~---gG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 186 (275)
T 3bkx_A 113 DDLGPIADQHFDRVVLAHSLWYFASAN--ALALLFKNMAAV---CDHVDVAEWSMQPTALDQ-IGHLQAAMIQGLLYAIA 186 (275)
T ss_dssp TCCGGGTTCCCSEEEEESCGGGSSCHH--HHHHHHHHHTTT---CSEEEEEEECSSCSSGGG-HHHHHHHHHHHHHHHHS
T ss_pred hccCCCCCCCEEEEEEccchhhCCCHH--HHHHHHHHHhCC---CCEEEEEEecCCCCchhh-hhHHHHHHHHHHHhhcc
Confidence 2 2 23699999999999999887 578888888888 899999988765442211 1010 00000000
Q ss_pred E--eecCCcccCHHHHHHHHHHcCCeEEEEeec
Q 030291 139 N--FNVGGKERTEQEWGSLFVNAGFTHYKIAPI 169 (180)
Q Consensus 139 ~--~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 169 (180)
. .......++.+++.++++++||++++....
T Consensus 187 ~~~~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~ 219 (275)
T 3bkx_A 187 PSDVANIRTLITPDTLAQIAHDNTWTYTAGTIV 219 (275)
T ss_dssp CCTTCSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred ccccccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence 0 011124679999999999999999988765
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4e-18 Score=124.20 Aligned_cols=133 Identities=8% Similarity=0.016 Sum_probs=103.6
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----------------------CCCeeEEecCCcc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----------------------TDNLKYIEGDMFQ 69 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----------------------~~~~~~~~~d~~~ 69 (180)
.++.+|||+|||+|..+..|++. +.+++++|+|+ +++.+++ ..++++.++|+.+
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 46789999999999999999988 66899999976 8887742 1579999999976
Q ss_pred -cC---CCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCc
Q 030291 70 -FI---PPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGK 145 (180)
Q Consensus 70 -~~---~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (180)
+. +.||+|++..++++++++....+++++.++||| ||.+++.......... . ....
T Consensus 145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~Lkp---GG~l~l~~~~~~~~~~----------------~-g~~~ 204 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRK---EFQYLVAVLSYDPTKH----------------A-GPPF 204 (252)
T ss_dssp GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEE---EEEEEEEEEECCTTSC----------------C-CSSC
T ss_pred CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCC---CeEEEEEEEecCCccC----------------C-CCCC
Confidence 21 469999999999999988777899999999999 8888766654322100 0 0112
Q ss_pred ccCHHHHHHHHHHcCCeEEEEeec
Q 030291 146 ERTEQEWGSLFVNAGFTHYKIAPI 169 (180)
Q Consensus 146 ~~~~~~~~~~l~~aGf~~~~~~~~ 169 (180)
..+.+++.++++. +|+++.....
T Consensus 205 ~~~~~el~~~l~~-~f~v~~~~~~ 227 (252)
T 2gb4_A 205 YVPSAELKRLFGT-KCSMQCLEEV 227 (252)
T ss_dssp CCCHHHHHHHHTT-TEEEEEEEEE
T ss_pred CCCHHHHHHHhhC-CeEEEEEecc
Confidence 3588999999987 5998776543
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.77 E-value=8e-19 Score=126.81 Aligned_cols=151 Identities=17% Similarity=0.182 Sum_probs=105.2
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC---CCCeeEEecCCcc-cC--CCccEEEecccccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ---TDNLKYIEGDMFQ-FI--PPSDAFFFKTVFHF 85 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~---~~~~~~~~~d~~~-~~--~~~D~v~~~~~l~~ 85 (180)
..++.+|||||||+|.++..+++... .+++++|+++ +++.+++ ..++++.++|+.+ +. ..||+|++..+++|
T Consensus 41 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 119 (243)
T 3bkw_A 41 EVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLALHY 119 (243)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEEEEESCGGG
T ss_pred ccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEEEEeccccc
Confidence 34678999999999999999988732 2899999965 8877764 3479999999965 22 35999999999999
Q ss_pred CChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCch--hh-hhh-------hhccceeeE----e--ecCCcccCH
Q 030291 86 FDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDR--EL-TES-------KLLFDIFMN----F--NVGGKERTE 149 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~--~~-~~~-------~~~~~~~~~----~--~~~~~~~~~ 149 (180)
+++.. .++++++++|+| ||.+++............ .. ... ......... . ......++.
T Consensus 120 ~~~~~--~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 194 (243)
T 3bkw_A 120 VEDVA--RLFRTVHQALSP---GGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVKHHRTV 194 (243)
T ss_dssp CSCHH--HHHHHHHHHEEE---EEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCCEEECCH
T ss_pred cchHH--HHHHHHHHhcCc---CcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCceEEEeccH
Confidence 98877 789999999999 888888775421100000 00 000 000000000 0 011123589
Q ss_pred HHHHHHHHHcCCeEEEEeec
Q 030291 150 QEWGSLFVNAGFTHYKIAPI 169 (180)
Q Consensus 150 ~~~~~~l~~aGf~~~~~~~~ 169 (180)
++|.++++++||+++++...
T Consensus 195 ~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 195 GTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp HHHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHHcCCEeeeeccC
Confidence 99999999999999988754
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-18 Score=126.79 Aligned_cols=97 Identities=12% Similarity=0.163 Sum_probs=83.3
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcc-cC--CCccEEEeccccccCChH
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQ-FI--PPSDAFFFKTVFHFFDDE 89 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~-~~--~~~D~v~~~~~l~~~~~~ 89 (180)
+...+|||||||+|.++..|++. ..+++++|+++ |++.+++..++++.++|+.+ +. .+||+|++..++||++.+
T Consensus 38 ~~~~~vLDvGcGtG~~~~~l~~~--~~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~~ 115 (257)
T 4hg2_A 38 PARGDALDCGCGSGQASLGLAEF--FERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDLD 115 (257)
T ss_dssp SCSSEEEEESCTTTTTHHHHHTT--CSEEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCHH
T ss_pred CCCCCEEEEcCCCCHHHHHHHHh--CCEEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHhhHH
Confidence 45689999999999999999988 45799999976 99999988999999999955 33 369999999999888643
Q ss_pred HHHHHHHHHHHhhccCCCCcEEEEEEeee
Q 030291 90 DCLKLLKKCREAIASNGERGKVLIIDIVI 118 (180)
Q Consensus 90 ~~~~~l~~~~~~L~p~~~~G~~~~~~~~~ 118 (180)
+++++++++||| ||.+++.....
T Consensus 116 ---~~~~e~~rvLkp---gG~l~~~~~~~ 138 (257)
T 4hg2_A 116 ---RFWAELRRVARP---GAVFAAVTYGL 138 (257)
T ss_dssp ---HHHHHHHHHEEE---EEEEEEEEECC
T ss_pred ---HHHHHHHHHcCC---CCEEEEEECCC
Confidence 789999999999 89888877643
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-18 Score=127.46 Aligned_cols=140 Identities=17% Similarity=0.243 Sum_probs=106.4
Q ss_pred CCCeEEEeCCcc---cHHHHHHHHHCCCCeEEEeeCch-hhccCCC----CCCeeEEecCCccc------------C--C
Q 030291 15 GLRSMVDVGGGT---GAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----TDNLKYIEGDMFQF------------I--P 72 (180)
Q Consensus 15 ~~~~iLdiG~G~---G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----~~~~~~~~~d~~~~------------~--~ 72 (180)
+..+|||||||+ |.++..+.+.+|+.+++++|++. |++.+++ ..+++++++|+.+. + .
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~ 156 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS 156 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence 457999999999 99888888888999999999965 8888874 46899999999641 1 3
Q ss_pred CccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHH
Q 030291 73 PSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEW 152 (180)
Q Consensus 73 ~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (180)
.||+|++..++||+++.....+|++++++|+| ||.+++.+..... . .. ... ..+.+.....+.+.++.+++
T Consensus 157 ~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~p---GG~l~i~~~~~~~-~-~~-~~~---~~~~~~~~~~~~~~~s~~ei 227 (274)
T 2qe6_A 157 RPAAIMLVGMLHYLSPDVVDRVVGAYRDALAP---GSYLFMTSLVDTG-L-PA-QQK---LARITRENLGEGWARTPEEI 227 (274)
T ss_dssp SCCEEEETTTGGGSCTTTHHHHHHHHHHHSCT---TCEEEEEEEBCSS-C-HH-HHH---HHHHHHHHHSCCCCBCHHHH
T ss_pred CCEEEEEechhhhCCcHHHHHHHHHHHHhCCC---CcEEEEEEecCcc-h-HH-HHH---HHHHHHhcCCCCccCCHHHH
Confidence 69999999999999986566899999999999 9999999876532 1 11 111 11111111123456899999
Q ss_pred HHHHHHcCCeEEE
Q 030291 153 GSLFVNAGFTHYK 165 (180)
Q Consensus 153 ~~~l~~aGf~~~~ 165 (180)
.++| .||++++
T Consensus 228 ~~~l--~G~~l~~ 238 (274)
T 2qe6_A 228 ERQF--GDFELVE 238 (274)
T ss_dssp HHTT--TTCEECT
T ss_pred HHHh--CCCeEcc
Confidence 9999 5998765
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.7e-18 Score=124.12 Aligned_cols=150 Identities=11% Similarity=0.049 Sum_probs=104.1
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCcc-cC-CCccEEEecc-cccc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQ-FI-PPSDAFFFKT-VFHF 85 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~-~~-~~~D~v~~~~-~l~~ 85 (180)
++.+|||||||+|.++..+++. +.+++++|+++ +++.+++ ..++++.++|+.+ +. ..||+|++.. +++|
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~ 114 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY 114 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccc
Confidence 6789999999999999999888 56899999966 8888875 2279999999965 22 4699999998 9999
Q ss_pred CCh-HHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCC---chhh-------hhhhh--------ccceeeE-------
Q 030291 86 FDD-EDCLKLLKKCREAIASNGERGKVLIIDIVIDEKED---DREL-------TESKL--------LFDIFMN------- 139 (180)
Q Consensus 86 ~~~-~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~---~~~~-------~~~~~--------~~~~~~~------- 139 (180)
+++ .....++++++++|+| ||.+++.......... .... ...+. .......
T Consensus 115 ~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (246)
T 1y8c_A 115 IIDSDDLKKYFKAVSNHLKE---GGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFY 191 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEE---EEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEECSSSE
T ss_pred cCCHHHHHHHHHHHHHhcCC---CcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEEEecCCcc
Confidence 943 4456899999999999 7877774432110000 0000 00000 0000000
Q ss_pred ----eecCCcccCHHHHHHHHHHcCCeEEEEeec
Q 030291 140 ----FNVGGKERTEQEWGSLFVNAGFTHYKIAPI 169 (180)
Q Consensus 140 ----~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 169 (180)
.....+.++.++|.++|+++||+++++...
T Consensus 192 ~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~ 225 (246)
T 1y8c_A 192 KRFDEEHEERAYKEEDIEKYLKHGQLNILDKVDC 225 (246)
T ss_dssp EEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEES
T ss_pred cccEEEEEEEcCCHHHHHHHHHHCCCeEEEEEcc
Confidence 001135679999999999999999998755
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.9e-18 Score=127.48 Aligned_cols=143 Identities=15% Similarity=0.214 Sum_probs=96.9
Q ss_pred cCCCeEEEeCCcccHHHHH----HHHHCCCCeE--EEeeCch-hhccCCC-------CCCee--EEecCCcc-c------
Q 030291 14 QGLRSMVDVGGGTGAFARI----ISEAFPGIKC--TVLDLPH-AVTDMPQ-------TDNLK--YIEGDMFQ-F------ 70 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~----l~~~~~~~~~--~~~D~~~-~~~~a~~-------~~~~~--~~~~d~~~-~------ 70 (180)
.++.+|||||||+|.++.. +...++..++ +++|+|+ |++.+++ ..+++ +..++..+ .
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 4567999999999986653 3445577754 9999976 8887753 13444 44555532 1
Q ss_pred --CCCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccC
Q 030291 71 --IPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERT 148 (180)
Q Consensus 71 --~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (180)
..+||+|++..++||++|+. ++|++++++||| ||.+++.......... ..+........ .......++
T Consensus 131 ~~~~~fD~V~~~~~l~~~~d~~--~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~ 200 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVKDIP--ATLKFFHSLLGT---NAKMLIIVVSGSSGWD-KLWKKYGSRFP----QDDLCQYIT 200 (292)
T ss_dssp TCCCCEEEEEEESCGGGCSCHH--HHHHHHHHTEEE---EEEEEEEEECTTSHHH-HHHHHHGGGSC----CCTTCCCCC
T ss_pred cCCCceeEEEEeeeeeecCCHH--HHHHHHHHHcCC---CcEEEEEEecCCccHH-HHHHHHHHhcc----CCCcccCCC
Confidence 23699999999999999988 779999999999 8999988643211100 00011111010 011235678
Q ss_pred HHHHHHHHHHcCCeEEEE
Q 030291 149 EQEWGSLFVNAGFTHYKI 166 (180)
Q Consensus 149 ~~~~~~~l~~aGf~~~~~ 166 (180)
.++|.++|+++||+++..
T Consensus 201 ~~~~~~~l~~aGf~~~~~ 218 (292)
T 2aot_A 201 SDDLTQMLDNLGLKYECY 218 (292)
T ss_dssp HHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHCCCceEEE
Confidence 999999999999998764
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.9e-18 Score=133.35 Aligned_cols=148 Identities=11% Similarity=0.117 Sum_probs=106.8
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCc----cc----CCCc
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMF----QF----IPPS 74 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~----~~----~~~~ 74 (180)
.+++.+. .+++.+|||||||+|.++..+++. +.+++++|+++ +++.+++. ++......+. .. ..+|
T Consensus 98 ~l~~~~~--~~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~l~~~~~~f 172 (416)
T 4e2x_A 98 DFLATEL--TGPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK-GIRVRTDFFEKATADDVRRTEGPA 172 (416)
T ss_dssp HHHHTTT--CSSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT-TCCEECSCCSHHHHHHHHHHHCCE
T ss_pred HHHHHhC--CCCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc-CCCcceeeechhhHhhcccCCCCE
Confidence 3445555 567889999999999999999987 56899999976 88888764 3333332221 11 2479
Q ss_pred cEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHH
Q 030291 75 DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGS 154 (180)
Q Consensus 75 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (180)
|+|++..+++|+++.. .++++++++|+| ||.+++..+..... .......... ..+...++.+++.+
T Consensus 173 D~I~~~~vl~h~~d~~--~~l~~~~r~Lkp---gG~l~i~~~~~~~~------~~~~~~~~~~---~~~~~~~s~~~l~~ 238 (416)
T 4e2x_A 173 NVIYAANTLCHIPYVQ--SVLEGVDALLAP---DGVFVFEDPYLGDI------VAKTSFDQIF---DEHFFLFSATSVQG 238 (416)
T ss_dssp EEEEEESCGGGCTTHH--HHHHHHHHHEEE---EEEEEEEEECHHHH------HHHTCGGGCS---TTCCEECCHHHHHH
T ss_pred EEEEECChHHhcCCHH--HHHHHHHHHcCC---CeEEEEEeCChHHh------hhhcchhhhh---hhhhhcCCHHHHHH
Confidence 9999999999999887 889999999999 88888865543211 0111111111 23345679999999
Q ss_pred HHHHcCCeEEEEeecC
Q 030291 155 LFVNAGFTHYKIAPIF 170 (180)
Q Consensus 155 ~l~~aGf~~~~~~~~~ 170 (180)
+++++||+++++....
T Consensus 239 ll~~aGf~~~~~~~~~ 254 (416)
T 4e2x_A 239 MAQRCGFELVDVQRLP 254 (416)
T ss_dssp HHHHTTEEEEEEEEEC
T ss_pred HHHHcCCEEEEEEEcc
Confidence 9999999999887753
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.75 E-value=6e-18 Score=121.04 Aligned_cols=145 Identities=17% Similarity=0.172 Sum_probs=105.3
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcc---cC--CCccEEEeccccccCC
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQ---FI--PPSDAFFFKTVFHFFD 87 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~---~~--~~~D~v~~~~~l~~~~ 87 (180)
.++.+|||+|||+|.++..+++. +.+++++|+++ +++.+++.. .++.++|+.+ +. ..||+|++..+++|++
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~ 107 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKEN--GTRVSGIEAFPEAAEQAKEKL-DHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLF 107 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTT--TCEEEEEESSHHHHHHHHTTS-SEEEESCTTTCCCCSCTTCEEEEEEESCGGGSS
T ss_pred cCCCcEEEeCCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhC-CcEEEcchhhcCCCCCCCccCEEEECChhhhcC
Confidence 46789999999999999999888 47999999966 888777532 3678888754 22 3599999999999999
Q ss_pred hHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhh-hhcccee--e-EeecCCcccCHHHHHHHHHHcCCeE
Q 030291 88 DEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTES-KLLFDIF--M-NFNVGGKERTEQEWGSLFVNAGFTH 163 (180)
Q Consensus 88 ~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~-~~~~~~~~~~~~~~~~~l~~aGf~~ 163 (180)
++. .+++++.++|+| ||.+++..+...... ..... ...+... . ....+.+.++.++|.++++++||++
T Consensus 108 ~~~--~~l~~~~~~L~~---gG~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 179 (230)
T 3cc8_A 108 DPW--AVIEKVKPYIKQ---NGVILASIPNVSHIS---VLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSI 179 (230)
T ss_dssp CHH--HHHHHTGGGEEE---EEEEEEEEECTTSHH---HHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTEEE
T ss_pred CHH--HHHHHHHHHcCC---CCEEEEEeCCcchHH---HHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCCeE
Confidence 887 889999999999 888888765432210 00000 0000000 0 0012235679999999999999999
Q ss_pred EEEeec
Q 030291 164 YKIAPI 169 (180)
Q Consensus 164 ~~~~~~ 169 (180)
++....
T Consensus 180 ~~~~~~ 185 (230)
T 3cc8_A 180 SKVDRV 185 (230)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 888764
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.75 E-value=7.2e-18 Score=120.33 Aligned_cols=137 Identities=17% Similarity=0.165 Sum_probs=101.8
Q ss_pred CCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcc-cC--CCccEEEeccccccCChHHH
Q 030291 16 LRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQ-FI--PPSDAFFFKTVFHFFDDEDC 91 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~-~~--~~~D~v~~~~~l~~~~~~~~ 91 (180)
+.+|||||||+|.++..+++. +++|+++ +++.+++. ++++.++|+.+ +. ..||+|++..+++|+++..
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~- 119 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVDDPE- 119 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCHH-
T ss_pred CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-CCEEEEcccccCCCCCCCeeEEEEcchHhhccCHH-
Confidence 789999999999999877543 9999966 88887755 78999999855 22 2599999999999998887
Q ss_pred HHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEEEEeec
Q 030291 92 LKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPI 169 (180)
Q Consensus 92 ~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 169 (180)
.+++++.++|+| ||.+++.......... ..................++.+++.++++++||+++++...
T Consensus 120 -~~l~~~~~~L~p---gG~l~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 188 (219)
T 1vlm_A 120 -RALKEAYRILKK---GGYLIVGIVDRESFLG-----REYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQT 188 (219)
T ss_dssp -HHHHHHHHHEEE---EEEEEEEEECSSSHHH-----HHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred -HHHHHHHHHcCC---CcEEEEEEeCCccHHH-----HHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEecc
Confidence 789999999999 8888888764432111 10000000011112345679999999999999999888755
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.74 E-value=7.1e-17 Score=112.56 Aligned_cols=126 Identities=16% Similarity=0.157 Sum_probs=103.3
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-CCCeeEEecCCcc-cC--CCccEEEec-cccccC
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-TDNLKYIEGDMFQ-FI--PPSDAFFFK-TVFHFF 86 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-~~~~~~~~~d~~~-~~--~~~D~v~~~-~~l~~~ 86 (180)
++++.+|||+|||+|.++..+++. +.+++++|+++ +++.+++ ..++++.++|+.+ +. ..||+|++. .+++|+
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~ 121 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFL 121 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGS
T ss_pred ccCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhc
Confidence 467889999999999999999887 66899999965 8877765 4679999999865 23 369999998 789999
Q ss_pred ChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEEEE
Q 030291 87 DDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKI 166 (180)
Q Consensus 87 ~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 166 (180)
+++....+++++.++|+| ||.+++..... ..++.+++.+.++++||++++.
T Consensus 122 ~~~~~~~~l~~~~~~l~~---~G~l~~~~~~~--------------------------~~~~~~~~~~~l~~~Gf~~~~~ 172 (195)
T 3cgg_A 122 AEDGREPALANIHRALGA---DGRAVIGFGAG--------------------------RGWVFGDFLEVAERVGLELENA 172 (195)
T ss_dssp CHHHHHHHHHHHHHHEEE---EEEEEEEEETT--------------------------SSCCHHHHHHHHHHHTEEEEEE
T ss_pred ChHHHHHHHHHHHHHhCC---CCEEEEEeCCC--------------------------CCcCHHHHHHHHHHcCCEEeee
Confidence 877777999999999999 88887754211 1257889999999999999988
Q ss_pred eec
Q 030291 167 API 169 (180)
Q Consensus 167 ~~~ 169 (180)
...
T Consensus 173 ~~~ 175 (195)
T 3cgg_A 173 FES 175 (195)
T ss_dssp ESS
T ss_pred ecc
Confidence 654
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.9e-18 Score=124.21 Aligned_cols=149 Identities=18% Similarity=0.209 Sum_probs=105.9
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC---CCCeeEEecCCccc-C-------CCccEEEec
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ---TDNLKYIEGDMFQF-I-------PPSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~---~~~~~~~~~d~~~~-~-------~~~D~v~~~ 80 (180)
++++.+|||||||+|.++..+++..+ +++++|+++ +++.+++ ..++++.++|+.+. . ..||+|++.
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~ 131 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR 131 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence 46778999999999999999999975 799999966 8887764 45899999999651 1 138999999
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhcc----ceeeEeecCCcccCHHHHHHHH
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLF----DIFMNFNVGGKERTEQEWGSLF 156 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l 156 (180)
.++||+++.....+++++.++|+| ||.+++.+...........+....... ............++.+++.+++
T Consensus 132 ~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (245)
T 3ggd_A 132 TGFHHIPVEKRELLGQSLRILLGK---QGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYF 208 (245)
T ss_dssp SSSTTSCGGGHHHHHHHHHHHHTT---TCEEEEEEECTTHHHHHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHHHHC
T ss_pred chhhcCCHHHHHHHHHHHHHHcCC---CCEEEEEeCCccccHHHHHHHhCCCCCchhhhhccccCCCCCccCHHHHHHHh
Confidence 999999966666999999999999 999999987543211100000000000 0000000011236889999999
Q ss_pred HHcCCeEEEEee
Q 030291 157 VNAGFTHYKIAP 168 (180)
Q Consensus 157 ~~aGf~~~~~~~ 168 (180)
+||+++....
T Consensus 209 --aGf~~~~~~~ 218 (245)
T 3ggd_A 209 --PDFEILSQGE 218 (245)
T ss_dssp --TTEEEEEEEC
T ss_pred --CCCEEEeccc
Confidence 9999987643
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-17 Score=116.06 Aligned_cols=135 Identities=15% Similarity=0.129 Sum_probs=104.7
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCccc--CCCccEEEecccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQF--IPPSDAFFFKTVF 83 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~--~~~~D~v~~~~~l 83 (180)
..++.+|||+|||+|.++..+++. +.+++++|+++ +++.+++ ..++++.++|+.+. ...||+|++..++
T Consensus 30 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~l 107 (199)
T 2xvm_A 30 VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYDFILSTVVL 107 (199)
T ss_dssp TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCEEEEEEESCG
T ss_pred ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCceEEEEcchh
Confidence 456789999999999999999887 66899999966 8887764 24799999998652 2369999999999
Q ss_pred ccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeE
Q 030291 84 HFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTH 163 (180)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 163 (180)
+|+++.....+++++.++|+| ||.+++.+......... .......++.+++.+++++ |++
T Consensus 108 ~~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~---------------~~~~~~~~~~~~l~~~~~~--f~~ 167 (199)
T 2xvm_A 108 MFLEAKTIPGLIANMQRCTKP---GGYNLIVAAMDTADYPC---------------TVGFPFAFKEGELRRYYEG--WER 167 (199)
T ss_dssp GGSCGGGHHHHHHHHHHTEEE---EEEEEEEEEBCCSSSCC---------------CSCCSCCBCTTHHHHHTTT--SEE
T ss_pred hhCCHHHHHHHHHHHHHhcCC---CeEEEEEEeeccCCcCC---------------CCCCCCccCHHHHHHHhcC--CeE
Confidence 999966666899999999999 89888877654332110 0111235688999999986 998
Q ss_pred EEEeec
Q 030291 164 YKIAPI 169 (180)
Q Consensus 164 ~~~~~~ 169 (180)
++....
T Consensus 168 ~~~~~~ 173 (199)
T 2xvm_A 168 VKYNED 173 (199)
T ss_dssp EEEECC
T ss_pred EEeccc
Confidence 877543
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-17 Score=122.26 Aligned_cols=147 Identities=14% Similarity=0.127 Sum_probs=104.2
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCcc-cC--CCccEEEecccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQ-FI--PPSDAFFFKTVF 83 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~-~~--~~~D~v~~~~~l 83 (180)
++++.+|||||||+|.++..+++. +.+++++|+++ +++.+++ ..++++.++|+.+ +. ..||+|++..++
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence 567889999999999999999887 67899999966 8877754 4689999999955 22 359999999999
Q ss_pred ccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhh-hhhhccceeeE-eecCCcccCHHHHHHHHHHcCC
Q 030291 84 HFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELT-ESKLLFDIFMN-FNVGGKERTEQEWGSLFVNAGF 161 (180)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~aGf 161 (180)
||+++.. .+++++.++|+| ||.+++. ...........+. ........... .......++.+++.++++++||
T Consensus 115 ~~~~~~~--~~l~~~~~~L~p---gG~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 188 (263)
T 2yqz_A 115 HLVPDWP--KVLAEAIRVLKP---GGALLEG-WDQAEASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGL 188 (263)
T ss_dssp GGCTTHH--HHHHHHHHHEEE---EEEEEEE-EEEECCCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTC
T ss_pred hhcCCHH--HHHHHHHHHCCC---CcEEEEE-ecCCCccHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCC
Confidence 9999877 789999999999 8888887 3322111100000 01111110000 0012245678999999999999
Q ss_pred eEEEEe
Q 030291 162 THYKIA 167 (180)
Q Consensus 162 ~~~~~~ 167 (180)
+++...
T Consensus 189 ~~~~~~ 194 (263)
T 2yqz_A 189 KPRTRE 194 (263)
T ss_dssp CCEEEE
T ss_pred CcceEE
Confidence 977653
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-18 Score=126.46 Aligned_cols=140 Identities=11% Similarity=0.099 Sum_probs=98.7
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----C------------------------------
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----T------------------------------ 57 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----~------------------------------ 57 (180)
..++.+|||||||+|.++..++... -.+++++|+|+ |++.+++ .
T Consensus 53 ~~~g~~vLDiGCG~G~~~~~~~~~~-~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T 2a14_A 53 GLQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 131 (263)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCceEEEeCCCccHHHHHHHHhh-hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence 3467899999999998877655552 13699999976 8886653 0
Q ss_pred -CCee-EEecCCccc-------CCCccEEEeccccccC-Ch-HHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchh
Q 030291 58 -DNLK-YIEGDMFQF-------IPPSDAFFFKTVFHFF-DD-EDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRE 126 (180)
Q Consensus 58 -~~~~-~~~~d~~~~-------~~~~D~v~~~~~l~~~-~~-~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~ 126 (180)
.++. +.++|+.+. .++||+|+++.++||+ ++ ++...++++++++||| ||.+++.+...... .
T Consensus 132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKP---GG~li~~~~~~~~~--~-- 204 (263)
T 2a14_A 132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKP---GGHLVTTVTLRLPS--Y-- 204 (263)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEESSCCE--E--
T ss_pred HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCC---CcEEEEEEeecCcc--c--
Confidence 1233 788888652 2469999999999986 32 4455889999999999 89999886532110 0
Q ss_pred hhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEEEEeec
Q 030291 127 LTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPI 169 (180)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 169 (180)
.... . ......++.+++.+.|+++||+++++...
T Consensus 205 ------~~g~--~-~~~~~~~~~~~l~~~l~~aGF~i~~~~~~ 238 (263)
T 2a14_A 205 ------MVGK--R-EFSCVALEKGEVEQAVLDAGFDIEQLLHS 238 (263)
T ss_dssp ------EETT--E-EEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred ------eeCC--e-EeeccccCHHHHHHHHHHCCCEEEEEeec
Confidence 0000 0 01123468999999999999999888764
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.73 E-value=9e-17 Score=116.01 Aligned_cols=97 Identities=18% Similarity=0.346 Sum_probs=78.3
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCccc-C-CCccEEEecc-cc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQF-I-PPSDAFFFKT-VF 83 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~~-~-~~~D~v~~~~-~l 83 (180)
+++..+|||+|||+|.++..+++. .+++++|+++ +++.+++ ..++++.++|+.+. . ..||+|++.. ++
T Consensus 31 ~~~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~ 107 (243)
T 3d2l_A 31 VEPGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSL 107 (243)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECTTGG
T ss_pred cCCCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeCCch
Confidence 346689999999999999988776 6899999965 8888764 35789999998652 2 3699999986 99
Q ss_pred ccCC-hHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 84 HFFD-DEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 84 ~~~~-~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
+|+. ......+++++.++|+| ||.+++..
T Consensus 108 ~~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~ 137 (243)
T 3d2l_A 108 NYLQTEADVKQTFDSAARLLTD---GGKLLFDV 137 (243)
T ss_dssp GGCCSHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHhcCC---CeEEEEEc
Confidence 9984 34556889999999999 78777643
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.7e-17 Score=115.00 Aligned_cols=148 Identities=11% Similarity=0.097 Sum_probs=104.5
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCcc-cC--CCccEEEecccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQ-FI--PPSDAFFFKTVF 83 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~-~~--~~~D~v~~~~~l 83 (180)
.+++.+|||+|||+|..+..++.. ++.+++++|+++ +++.+++ ..++++.++|+.+ +. ..||+|++..++
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 99 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTI 99 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred cCCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChH
Confidence 356789999999999985544444 367999999966 8887764 3678999999965 22 359999999999
Q ss_pred ccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeE----eecCCcccCHHHHHHHHHHc
Q 030291 84 HFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMN----FNVGGKERTEQEWGSLFVNA 159 (180)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~a 159 (180)
+|++......+++++.++|+| ||.+++.+.......... ........+.. .....+.++.+++.+++++.
T Consensus 100 ~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 173 (209)
T 2p8j_A 100 FHMRKNDVKEAIDEIKRVLKP---GGLACINFLTTKDERYNK---GEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDM 173 (209)
T ss_dssp GGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEETTSTTTTC---SEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTS
T ss_pred HhCCHHHHHHHHHHHHHHcCC---CcEEEEEEecccchhccc---hhhhccccceeccCCCceeEEecCHHHHHHHHhhc
Confidence 999766667999999999999 899988887654332110 00000000000 00112567899999999999
Q ss_pred CCeEEEEe
Q 030291 160 GFTHYKIA 167 (180)
Q Consensus 160 Gf~~~~~~ 167 (180)
||...+..
T Consensus 174 g~~~~~~~ 181 (209)
T 2p8j_A 174 KVLFKEDR 181 (209)
T ss_dssp EEEEEEEE
T ss_pred Cceeeeee
Confidence 99776543
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.2e-17 Score=123.02 Aligned_cols=98 Identities=17% Similarity=0.195 Sum_probs=84.4
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCch-hhccCCC--------CCCeeEEecCCcc-c--C------CCc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPH-AVTDMPQ--------TDNLKYIEGDMFQ-F--I------PPS 74 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~-~~~~a~~--------~~~~~~~~~d~~~-~--~------~~~ 74 (180)
+++.+|||||||+|.++..+++.+ +..+++++|+++ +++.+++ ..++++.++|+.+ + . ..|
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 114 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI 114 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence 578899999999999999999886 889999999966 8888864 4689999999965 2 2 469
Q ss_pred cEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 75 DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 75 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
|+|++..++||+ +.. .+++++.++|+| ||.+++....
T Consensus 115 D~V~~~~~l~~~-~~~--~~l~~~~~~Lkp---gG~l~i~~~~ 151 (299)
T 3g5t_A 115 DMITAVECAHWF-DFE--KFQRSAYANLRK---DGTIAIWGYA 151 (299)
T ss_dssp EEEEEESCGGGS-CHH--HHHHHHHHHEEE---EEEEEEEEEE
T ss_pred eEEeHhhHHHHh-CHH--HHHHHHHHhcCC---CcEEEEEecC
Confidence 999999999999 666 889999999999 8998885544
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=6.5e-17 Score=120.09 Aligned_cols=153 Identities=13% Similarity=0.042 Sum_probs=106.0
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcc-cC---CCccEEEec
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQ-FI---PPSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~-~~---~~~D~v~~~ 80 (180)
++++.+|||||||+|.++..+++.. ..+++++|+++ +++.+++ ..++++.++|+.+ +. ..||+|++.
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~ 140 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ 140 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHHT-CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEEC
Confidence 3678899999999999999888773 55899999966 8887764 1468999999965 22 259999999
Q ss_pred ccccc--CChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCc------------hhhh---hhhh-ccceeeEe--
Q 030291 81 TVFHF--FDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDD------------RELT---ESKL-LFDIFMNF-- 140 (180)
Q Consensus 81 ~~l~~--~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~------------~~~~---~~~~-~~~~~~~~-- 140 (180)
.++|| ........+++++.++|+| ||.+++..+........ ..+. .... ....+...
T Consensus 141 ~~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 217 (298)
T 1ri5_A 141 FSFHYAFSTSESLDIAQRNIARHLRP---GGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLL 217 (298)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEET
T ss_pred chhhhhcCCHHHHHHHHHHHHHhcCC---CCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEc
Confidence 99988 4455556899999999999 88888877543210000 0000 0000 00000000
Q ss_pred ----ecCCcccCHHHHHHHHHHcCCeEEEEeec
Q 030291 141 ----NVGGKERTEQEWGSLFVNAGFTHYKIAPI 169 (180)
Q Consensus 141 ----~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 169 (180)
....+.++.+++.++++++||++++....
T Consensus 218 ~~~~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~ 250 (298)
T 1ri5_A 218 DSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGF 250 (298)
T ss_dssp TSCSSEEEECCCHHHHHHHHHTTTEEEEEEEEH
T ss_pred hhhcCCcccccCHHHHHHHHHHcCCEEEEecCH
Confidence 01124578999999999999999988755
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.1e-17 Score=122.71 Aligned_cols=100 Identities=20% Similarity=0.207 Sum_probs=82.4
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----------CCCeeEEecCCcc-c---C--CCcc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----------TDNLKYIEGDMFQ-F---I--PPSD 75 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----------~~~~~~~~~d~~~-~---~--~~~D 75 (180)
..++.+|||||||+|.++..+++. +.+++++|+++ +++.+++ ..++.+..+|+.+ + . ..||
T Consensus 55 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD 132 (293)
T 3thr_A 55 QHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFD 132 (293)
T ss_dssp HTTCCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeE
Confidence 356789999999999999999988 55899999976 8888853 2567888888855 2 2 3699
Q ss_pred EEEec-cccccCCh-----HHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 76 AFFFK-TVFHFFDD-----EDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 76 ~v~~~-~~l~~~~~-----~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
+|++. .+++|+++ .....+++++.++|+| ||.+++....
T Consensus 133 ~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~ 177 (293)
T 3thr_A 133 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRP---GGLLVIDHRN 177 (293)
T ss_dssp EEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEE---EEEEEEEEEC
T ss_pred EEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCC---CeEEEEEeCC
Confidence 99998 89999998 4455899999999999 8888887654
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.70 E-value=9.1e-17 Score=113.39 Aligned_cols=131 Identities=12% Similarity=0.103 Sum_probs=105.3
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcccC-CCccEEEeccccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQFI-PPSDAFFFKTVFH 84 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~~-~~~D~v~~~~~l~ 84 (180)
++++.+|||+|||+|.++..+++. +..+++++|+++ +++.+++ ..++++.++|+.+.. ..||+|+++..++
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~ 136 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHKL-GAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAE 136 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHH
T ss_pred ccCCCEEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHH
Confidence 456789999999999999998764 456899999966 8887764 234999999997643 4699999988776
Q ss_pred cCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEE
Q 030291 85 FFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHY 164 (180)
Q Consensus 85 ~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 164 (180)
++ ..+++++.++|+| ||.+++.+.... +.+++.+.++++||+++
T Consensus 137 ~~-----~~~l~~~~~~L~~---gG~l~~~~~~~~----------------------------~~~~~~~~~~~~Gf~~~ 180 (205)
T 3grz_A 137 IL-----LDLIPQLDSHLNE---DGQVIFSGIDYL----------------------------QLPKIEQALAENSFQID 180 (205)
T ss_dssp HH-----HHHGGGSGGGEEE---EEEEEEEEEEGG----------------------------GHHHHHHHHHHTTEEEE
T ss_pred HH-----HHHHHHHHHhcCC---CCEEEEEecCcc----------------------------cHHHHHHHHHHcCCceE
Confidence 53 4789999999999 888888653221 45788899999999999
Q ss_pred EEeecCCceeEEEEeC
Q 030291 165 KIAPIFGIKSLIEVYP 180 (180)
Q Consensus 165 ~~~~~~~~~~~~~~~~ 180 (180)
++....++.+++..+|
T Consensus 181 ~~~~~~~w~~~~~~~~ 196 (205)
T 3grz_A 181 LKMRAGRWIGLAISRK 196 (205)
T ss_dssp EEEEETTEEEEEEEEC
T ss_pred EeeccCCEEEEEEecc
Confidence 9999888888887654
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.4e-17 Score=120.48 Aligned_cols=140 Identities=13% Similarity=0.155 Sum_probs=101.9
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC---CC-------------------------------
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ---TD------------------------------- 58 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~---~~------------------------------- 58 (180)
.++.+|||||||+|.++..+++..+ .+++++|+++ +++.+++ ..
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 4568999999999999988887754 4899999976 8887754 11
Q ss_pred -Ce-eEEecCCccc----C---CCccEEEeccccccCChH--HHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhh
Q 030291 59 -NL-KYIEGDMFQF----I---PPSDAFFFKTVFHFFDDE--DCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDREL 127 (180)
Q Consensus 59 -~~-~~~~~d~~~~----~---~~~D~v~~~~~l~~~~~~--~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~ 127 (180)
++ ++.++|+.+. . +.||+|++..+++++... ....+++++.++|+| ||.+++.+..... .
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~~~~~--~---- 204 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKP---GGFLVMVDALKSS--Y---- 204 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEESSCC--E----
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCC---CcEEEEEecCCCc--e----
Confidence 17 8999998652 1 359999999999954322 444889999999999 8888888743221 0
Q ss_pred hhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEEEEeecC
Q 030291 128 TESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIF 170 (180)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 170 (180)
...... ......++.+++.++++++||+++++....
T Consensus 205 ------~~~~~~-~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 240 (265)
T 2i62_A 205 ------YMIGEQ-KFSSLPLGWETVRDAVEEAGYTIEQFEVIS 240 (265)
T ss_dssp ------EEETTE-EEECCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred ------EEcCCc-cccccccCHHHHHHHHHHCCCEEEEEEEec
Confidence 000000 011245688999999999999999887654
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.3e-16 Score=114.58 Aligned_cols=97 Identities=25% Similarity=0.390 Sum_probs=78.7
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCcc-cC-CCccEEEec-ccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQ-FI-PPSDAFFFK-TVF 83 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~-~~-~~~D~v~~~-~~l 83 (180)
.+++.+|||+|||+|.++..+++. +.+++++|+++ +++.+++ ..++++.++|+.+ +. ..||+|++. ..+
T Consensus 39 ~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~ 116 (252)
T 1wzn_A 39 KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTI 116 (252)
T ss_dssp SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECSSGG
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCccEEEEcCCch
Confidence 356789999999999999999887 67899999966 8888764 3478999999965 22 369999986 456
Q ss_pred ccCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 84 HFFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
++++......+++++.++|+| ||.+++.
T Consensus 117 ~~~~~~~~~~~l~~~~~~L~p---gG~li~~ 144 (252)
T 1wzn_A 117 MYFDEEDLRKLFSKVAEALKP---GGVFITD 144 (252)
T ss_dssp GGSCHHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHcCC---CeEEEEe
Confidence 677766677999999999999 7777664
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=3e-16 Score=111.48 Aligned_cols=121 Identities=14% Similarity=0.120 Sum_probs=95.4
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCCCCCeeEEecCCcc-cC--CCccEEEeccccccCChHH
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQ-FI--PPSDAFFFKTVFHFFDDED 90 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~d~~~-~~--~~~D~v~~~~~l~~~~~~~ 90 (180)
.++.+|||||||+|.++..+ ..+++++|+++. ++++.++|+.+ +. ..||+|++..++|+ .+..
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l-----~~~v~~~D~s~~--------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~-~~~~ 131 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSI-----RNPVHCFDLASL--------DPRVTVCDMAQVPLEDESVDVAVFCLSLMG-TNIR 131 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHC-----CSCEEEEESSCS--------STTEEESCTTSCSCCTTCEEEEEEESCCCS-SCHH
T ss_pred CCCCeEEEECCcCCHHHHHh-----hccEEEEeCCCC--------CceEEEeccccCCCCCCCEeEEEEehhccc-cCHH
Confidence 46789999999999998877 257999999653 56778888855 22 35999999999974 5555
Q ss_pred HHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEEEEeecC
Q 030291 91 CLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIF 170 (180)
Q Consensus 91 ~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 170 (180)
.+++++.++|+| ||.+++.+... ...+.+++.++++++||++++.....
T Consensus 132 --~~l~~~~~~L~~---gG~l~i~~~~~--------------------------~~~~~~~~~~~l~~~Gf~~~~~~~~~ 180 (215)
T 2zfu_A 132 --DFLEEANRVLKP---GGLLKVAEVSS--------------------------RFEDVRTFLRAVTKLGFKIVSKDLTN 180 (215)
T ss_dssp --HHHHHHHHHEEE---EEEEEEEECGG--------------------------GCSCHHHHHHHHHHTTEEEEEEECCS
T ss_pred --HHHHHHHHhCCC---CeEEEEEEcCC--------------------------CCCCHHHHHHHHHHCCCEEEEEecCC
Confidence 889999999999 89988876421 11278999999999999999877766
Q ss_pred CceeEEEEe
Q 030291 171 GIKSLIEVY 179 (180)
Q Consensus 171 ~~~~~~~~~ 179 (180)
+...++.++
T Consensus 181 ~~~~~~~~~ 189 (215)
T 2zfu_A 181 SHFFLFDFQ 189 (215)
T ss_dssp TTCEEEEEE
T ss_pred CeEEEEEEE
Confidence 666666654
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-16 Score=111.86 Aligned_cols=134 Identities=9% Similarity=0.037 Sum_probs=99.5
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCcc-cC--CCccEEEeccccc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQ-FI--PPSDAFFFKTVFH 84 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~-~~--~~~D~v~~~~~l~ 84 (180)
+++ +|||||||+|.++..+++. +.+++++|+++ +++.+++ ..++++.++|+.+ +. ..||+|++.. .
T Consensus 29 ~~~-~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~--~ 103 (202)
T 2kw5_A 29 PQG-KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIF--C 103 (202)
T ss_dssp CSS-EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEEC--C
T ss_pred CCC-CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEEh--h
Confidence 445 9999999999999998887 66899999966 8888765 2489999999865 22 3699999853 4
Q ss_pred cCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEE
Q 030291 85 FFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHY 164 (180)
Q Consensus 85 ~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 164 (180)
|++......+++++.++|+| ||.+++.......... .. .........++.+++.++++ ||+++
T Consensus 104 ~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~---------~~---~~~~~~~~~~~~~~l~~~l~--Gf~v~ 166 (202)
T 2kw5_A 104 HLPSSLRQQLYPKVYQGLKP---GGVFILEGFAPEQLQY---------NT---GGPKDLDLLPKLETLQSELP--SLNWL 166 (202)
T ss_dssp CCCHHHHHHHHHHHHTTCCS---SEEEEEEEECTTTGGG---------TS---CCSSSGGGCCCHHHHHHHCS--SSCEE
T ss_pred cCCHHHHHHHHHHHHHhcCC---CcEEEEEEeccccccC---------CC---CCCCcceeecCHHHHHHHhc--CceEE
Confidence 55656666899999999999 8998888765432210 00 00011235679999999999 99998
Q ss_pred EEeec
Q 030291 165 KIAPI 169 (180)
Q Consensus 165 ~~~~~ 169 (180)
++...
T Consensus 167 ~~~~~ 171 (202)
T 2kw5_A 167 IANNL 171 (202)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77543
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-16 Score=118.22 Aligned_cols=133 Identities=17% Similarity=0.154 Sum_probs=102.5
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCccc--CCCccEEEeccccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQF--IPPSDAFFFKTVFH 84 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~~--~~~~D~v~~~~~l~ 84 (180)
..++.+|||+|||+|.++..+++. +.+++++|+++ +++.+++ ..++++.++|+.+. ...||+|+++.+++
T Consensus 118 ~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~i~~~~~~~ 195 (286)
T 3m70_A 118 IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENYDFIVSTVVFM 195 (286)
T ss_dssp HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCEEEEEECSSGG
T ss_pred ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCccEEEEccchh
Confidence 346889999999999999999988 66899999966 8887764 23899999999652 23699999999999
Q ss_pred cCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEE
Q 030291 85 FFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHY 164 (180)
Q Consensus 85 ~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 164 (180)
|++++....+++++.++|+| ||.+++........... .......++.+++.+.++. |+++
T Consensus 196 ~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~---------------~~~~~~~~~~~~l~~~~~~--~~~~ 255 (286)
T 3m70_A 196 FLNRERVPSIIKNMKEHTNV---GGYNLIVAAMSTDDVPC---------------PLPFSFTFAENELKEYYKD--WEFL 255 (286)
T ss_dssp GSCGGGHHHHHHHHHHTEEE---EEEEEEEEEBCCSSSCC---------------SSCCSCCBCTTHHHHHTTT--SEEE
T ss_pred hCCHHHHHHHHHHHHHhcCC---CcEEEEEEecCCCCCCC---------------CCCccccCCHHHHHHHhcC--CEEE
Confidence 99988888999999999999 88877766543322110 0111234677888888855 8887
Q ss_pred EEe
Q 030291 165 KIA 167 (180)
Q Consensus 165 ~~~ 167 (180)
...
T Consensus 256 ~~~ 258 (286)
T 3m70_A 256 EYN 258 (286)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.69 E-value=2e-17 Score=122.78 Aligned_cols=139 Identities=15% Similarity=0.210 Sum_probs=95.1
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC--CC---------------------------------
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ--TD--------------------------------- 58 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~--~~--------------------------------- 58 (180)
++.+|||||||+|..+. ++...+..+++++|+++ |++.+++ ..
T Consensus 71 ~~~~vLDiGcG~G~~~~-l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQL-LSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp CCSEEEEETCTTCCGGG-TTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHH-HhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 56899999999999543 33333366899999976 8876643 00
Q ss_pred -CeeEEecCCcccC-------C--CccEEEeccccccCChH--HHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchh
Q 030291 59 -NLKYIEGDMFQFI-------P--PSDAFFFKTVFHFFDDE--DCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRE 126 (180)
Q Consensus 59 -~~~~~~~d~~~~~-------~--~~D~v~~~~~l~~~~~~--~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~ 126 (180)
.+++..+|+.+.. + +||+|+++.+++|+.+. ....+|++++++||| ||.+++.+...... .
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~Lkp---GG~l~~~~~~~~~~-~--- 222 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRP---GGHLLLIGALEESW-Y--- 222 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEEESCCE-E---
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCC---CCEEEEEEecCcce-E---
Confidence 1346666875411 1 39999999999995432 344889999999999 89988876432110 0
Q ss_pred hhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEEEEeecC
Q 030291 127 LTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIF 170 (180)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 170 (180)
... .. ......++.++|.++|+++||+++++....
T Consensus 223 ------~~~--~~-~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 257 (289)
T 2g72_A 223 ------LAG--EA-RLTVVPVSEEEVREALVRSGYKVRDLRTYI 257 (289)
T ss_dssp ------EET--TE-EEECCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ------EcC--Ce-eeeeccCCHHHHHHHHHHcCCeEEEeeEee
Confidence 000 00 011245799999999999999998876543
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.1e-16 Score=105.92 Aligned_cols=126 Identities=13% Similarity=0.179 Sum_probs=97.9
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcccCC--CccEEEeccccccCChH-
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQFIP--PSDAFFFKTVFHFFDDE- 89 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~~~--~~D~v~~~~~l~~~~~~- 89 (180)
.++.+|||+|||+|.++..+++.. +++++|+++ +++. ..++++.++|+.++.+ .||+|+++..+++.++.
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~---~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~~ 95 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES---HRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDDP 95 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT---CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCCT
T ss_pred CCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc---ccCCeEEECChhhhcccCCCCEEEECCCCccCCccc
Confidence 456799999999999999998885 899999976 7776 5678999999976443 69999999888865544
Q ss_pred ------HHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeE
Q 030291 90 ------DCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTH 163 (180)
Q Consensus 90 ------~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 163 (180)
....+++++.+.+ | ||.+++.... ..+.+++.++++++||+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~l-p---gG~l~~~~~~----------------------------~~~~~~l~~~l~~~gf~~ 143 (170)
T 3q87_B 96 IIGGGYLGREVIDRFVDAV-T---VGMLYLLVIE----------------------------ANRPKEVLARLEERGYGT 143 (170)
T ss_dssp TTBCCGGGCHHHHHHHHHC-C---SSEEEEEEEG----------------------------GGCHHHHHHHHHHTTCEE
T ss_pred cccCCcchHHHHHHHHhhC-C---CCEEEEEEec----------------------------CCCHHHHHHHHHHCCCcE
Confidence 2236789999999 8 8999886631 124578899999999998
Q ss_pred EEEeec-CCceeEEE
Q 030291 164 YKIAPI-FGIKSLIE 177 (180)
Q Consensus 164 ~~~~~~-~~~~~~~~ 177 (180)
+.+... .++..++.
T Consensus 144 ~~~~~~~~~~e~~~~ 158 (170)
T 3q87_B 144 RILKVRKILGETVYI 158 (170)
T ss_dssp EEEEEEECSSSEEEE
T ss_pred EEEEeeccCCceEEE
Confidence 877655 34444443
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-16 Score=116.33 Aligned_cols=141 Identities=20% Similarity=0.265 Sum_probs=100.5
Q ss_pred CCCeEEEeCCcc--cHHHHHH-HHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCccc---------CCCcc
Q 030291 15 GLRSMVDVGGGT--GAFARII-SEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQF---------IPPSD 75 (180)
Q Consensus 15 ~~~~iLdiG~G~--G~~~~~l-~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~---------~~~~D 75 (180)
+..+|||||||+ +.++..+ ....|+++++++|.+. |+..+++ ..+++++++|+.+. ...||
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D 157 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLD 157 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccC
Confidence 457899999997 3344444 4557999999999966 9999975 23699999999663 12355
Q ss_pred -----EEEeccccccCChHH-HHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCH
Q 030291 76 -----AFFFKTVFHFFDDED-CLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTE 149 (180)
Q Consensus 76 -----~v~~~~~l~~~~~~~-~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
.|+++.+|||+++.+ ...+++++.++|+| ||.+++++......... .... .+.+.....+..+++.
T Consensus 158 ~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~P---GG~Lvls~~~~d~~p~~--~~~~---~~~~~~~g~p~~~rs~ 229 (277)
T 3giw_A 158 LTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPS---GSYLAMSIGTAEFAPQE--VGRV---AREYAARNMPMRLRTH 229 (277)
T ss_dssp TTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCT---TCEEEEEEECCTTSHHH--HHHH---HHHHHHTTCCCCCCCH
T ss_pred cCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCC---CcEEEEEeccCCCCHHH--HHHH---HHHHHhcCCCCccCCH
Confidence 688999999999865 35789999999999 99999988765432111 1111 1111111123467899
Q ss_pred HHHHHHHHHcCCeEEE
Q 030291 150 QEWGSLFVNAGFTHYK 165 (180)
Q Consensus 150 ~~~~~~l~~aGf~~~~ 165 (180)
+++..+|. ||++++
T Consensus 230 ~ei~~~f~--Glelve 243 (277)
T 3giw_A 230 AEAEEFFE--GLELVE 243 (277)
T ss_dssp HHHHHTTT--TSEECT
T ss_pred HHHHHHhC--CCcccC
Confidence 99999994 999754
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.5e-17 Score=114.22 Aligned_cols=131 Identities=11% Similarity=0.093 Sum_probs=95.9
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCC-eEEEeeCch-hhccCCC-CCCeeEEecCCcc-cC--CCccEEEeccccccCC
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGI-KCTVLDLPH-AVTDMPQ-TDNLKYIEGDMFQ-FI--PPSDAFFFKTVFHFFD 87 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~-~~~~~D~~~-~~~~a~~-~~~~~~~~~d~~~-~~--~~~D~v~~~~~l~~~~ 87 (180)
.++.+|||||||+|.++..+ +. +++++|+++ +++.+++ ..++++.++|+.+ +. ..||+|++..+++|++
T Consensus 35 ~~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 109 (211)
T 2gs9_A 35 PPGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVE 109 (211)
T ss_dssp CCCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCS
T ss_pred CCCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcC
Confidence 37789999999999998877 44 899999966 8887775 3688999999855 22 2599999999999999
Q ss_pred hHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcC
Q 030291 88 DEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAG 160 (180)
Q Consensus 88 ~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 160 (180)
+.. ++++++.++|+| ||.+++..+......... ...... .. .....+.+.++.+++.++++ |
T Consensus 110 ~~~--~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~~-~~~~~~-~~--~~~~~~~~~~s~~~l~~~l~--G 171 (211)
T 2gs9_A 110 DVE--RVLLEARRVLRP---GGALVVGVLEALSPWAAL-YRRLGE-KG--VLPWAQARFLAREDLKALLG--P 171 (211)
T ss_dssp CHH--HHHHHHHHHEEE---EEEEEEEEECTTSHHHHH-HHHHHH-TT--CTTGGGCCCCCHHHHHHHHC--S
T ss_pred CHH--HHHHHHHHHcCC---CCEEEEEecCCcCcHHHH-HHHHhh-cc--CccccccccCCHHHHHHHhc--C
Confidence 877 789999999999 899988876543221110 000000 00 00012346689999999998 7
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-16 Score=113.00 Aligned_cols=142 Identities=12% Similarity=0.091 Sum_probs=93.8
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccC----C------CCCCeeEEecCCcc-cCC-CccEEEe
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDM----P------QTDNLKYIEGDMFQ-FIP-PSDAFFF 79 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a----~------~~~~~~~~~~d~~~-~~~-~~D~v~~ 79 (180)
..++.+|||||||+|.++..+++.+|+.+++++|+++ |++.+ + ...++++.++|+.+ +.+ ..|.+++
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~d~v~~ 104 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGVGELHV 104 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCEEEEEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCCCEEEE
Confidence 5678899999999999999999999999999999966 77642 2 13589999999965 222 1265553
Q ss_pred ---cccc--ccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHH
Q 030291 80 ---KTVF--HFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGS 154 (180)
Q Consensus 80 ---~~~l--~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (180)
...+ ||++++. .+++++.++||| ||.+++........... .. .... ......+..+++.+
T Consensus 105 ~~~~~~~~~~~~~~~~--~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~---~~---~~~~----~~~~~~~~~~~l~~ 169 (218)
T 3mq2_A 105 LMPWGSLLRGVLGSSP--EMLRGMAAVCRP---GASFLVALNLHAWRPSV---PE---VGEH----PEPTPDSADEWLAP 169 (218)
T ss_dssp ESCCHHHHHHHHTSSS--HHHHHHHHTEEE---EEEEEEEEEGGGBTTBC---GG---GTTC----CCCCHHHHHHHHHH
T ss_pred EccchhhhhhhhccHH--HHHHHHHHHcCC---CcEEEEEeccccccccc---cc---cccC----CccchHHHHHHHHH
Confidence 2233 2666666 789999999999 88887743211111000 00 0000 00011123456888
Q ss_pred HHHHcCCeEEEEeec
Q 030291 155 LFVNAGFTHYKIAPI 169 (180)
Q Consensus 155 ~l~~aGf~~~~~~~~ 169 (180)
.++++||++.++...
T Consensus 170 ~l~~aGf~i~~~~~~ 184 (218)
T 3mq2_A 170 RYAEAGWKLADCRYL 184 (218)
T ss_dssp HHHHTTEEEEEEEEE
T ss_pred HHHHcCCCceeeecc
Confidence 999999999887644
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-15 Score=109.38 Aligned_cols=145 Identities=12% Similarity=0.125 Sum_probs=100.5
Q ss_pred cccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCC----CCCCeeEEecCCccc---C---CCc
Q 030291 6 VKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMP----QTDNLKYIEGDMFQF---I---PPS 74 (180)
Q Consensus 6 ~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~----~~~~~~~~~~d~~~~---~---~~~ 74 (180)
++.+. +.++.+|||+|||+|.++..+++..+..+++++|+++ +++.++ ...++.+..+|+.++ . ..|
T Consensus 67 l~~~~--~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 144 (230)
T 1fbn_A 67 LKVMP--IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKV 144 (230)
T ss_dssp CCCCC--CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCE
T ss_pred ccccC--CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccE
Confidence 44444 6678899999999999999999997667999999965 775543 357899999998641 1 369
Q ss_pred cEEEeccccccCChH-HHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHH
Q 030291 75 DAFFFKTVFHFFDDE-DCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWG 153 (180)
Q Consensus 75 D~v~~~~~l~~~~~~-~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (180)
|+|+ ++++++ ....+++++.++|+| ||.+++. .......... .......+++.
T Consensus 145 D~v~-----~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~-~~~~~~~~~~-----------------~~~~~~~~~l~ 198 (230)
T 1fbn_A 145 DVIY-----EDVAQPNQAEILIKNAKWFLKK---GGYGMIA-IKARSIDVTK-----------------DPKEIFKEQKE 198 (230)
T ss_dssp EEEE-----ECCCSTTHHHHHHHHHHHHEEE---EEEEEEE-EEGGGTCSSS-----------------CHHHHHHHHHH
T ss_pred EEEE-----EecCChhHHHHHHHHHHHhCCC---CcEEEEE-EecCCCCCCC-----------------CHHHhhHHHHH
Confidence 9998 344544 223679999999999 8888886 2211110000 00111236777
Q ss_pred HHHHHcCCeEEEEeecCCc---eeEEEEe
Q 030291 154 SLFVNAGFTHYKIAPIFGI---KSLIEVY 179 (180)
Q Consensus 154 ~~l~~aGf~~~~~~~~~~~---~~~~~~~ 179 (180)
.++++||+.++......+ +.++.++
T Consensus 199 -~l~~~Gf~~~~~~~~~~~~~~~~~v~~~ 226 (230)
T 1fbn_A 199 -ILEAGGFKIVDEVDIEPFEKDHVMFVGI 226 (230)
T ss_dssp -HHHHHTEEEEEEEECTTTSTTEEEEEEE
T ss_pred -HHHHCCCEEEEEEccCCCccceEEEEEE
Confidence 899999999988877554 5555443
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.8e-16 Score=115.21 Aligned_cols=151 Identities=15% Similarity=0.125 Sum_probs=98.8
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CC-------CeeEEecCCcc-----------c
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TD-------NLKYIEGDMFQ-----------F 70 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~-------~~~~~~~d~~~-----------~ 70 (180)
++.+|||||||+|..+..++... ..+++|+|+|+ |++.|++ .. ++++.+.|+.. +
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~-~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGE-IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 46899999999998766666543 56899999977 9998875 11 25677777721 1
Q ss_pred CCCccEEEeccccccC-ChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchh----------h-hhhhhccc---
Q 030291 71 IPPSDAFFFKTVFHFF-DDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRE----------L-TESKLLFD--- 135 (180)
Q Consensus 71 ~~~~D~v~~~~~l~~~-~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~----------~-~~~~~~~~--- 135 (180)
.+.||+|+|..++||+ .+.+...++++++++||| ||.+++..+.......... . .+......
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~Lkp---GG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 203 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTAS---GGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIA 203 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEE---EEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEE
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCC---CCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeecccc
Confidence 2369999999999986 333446899999999999 8888887664221110000 0 00000000
Q ss_pred --ee-eEeec------CCcccCHHHHHHHHHHcCCeEEEEeec
Q 030291 136 --IF-MNFNV------GGKERTEQEWGSLFVNAGFTHYKIAPI 169 (180)
Q Consensus 136 --~~-~~~~~------~~~~~~~~~~~~~l~~aGf~~~~~~~~ 169 (180)
.. ..... .....+.+++.++++++||++++...+
T Consensus 204 ~~~~~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~f 246 (302)
T 2vdw_A 204 DDRIVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDF 246 (302)
T ss_dssp TTEEEEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEEH
T ss_pred ccccceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecCh
Confidence 00 00000 013467899999999999999988654
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-15 Score=109.09 Aligned_cols=137 Identities=11% Similarity=0.070 Sum_probs=97.8
Q ss_pred ccccccccCCCeEEEeCCcccHHHHHHHHH-CCCCeEEEeeCch-hhccCC----CCCCeeEEecCCccc------CCCc
Q 030291 7 KDCRPIFQGLRSMVDVGGGTGAFARIISEA-FPGIKCTVLDLPH-AVTDMP----QTDNLKYIEGDMFQF------IPPS 74 (180)
Q Consensus 7 ~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~-~~~~~~~~~D~~~-~~~~a~----~~~~~~~~~~d~~~~------~~~~ 74 (180)
+.++ ++++.+|||+|||+|.++..+++. .|.-+++++|+++ |++.++ +..|+..+..|...+ ...+
T Consensus 71 ~~l~--ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~v 148 (233)
T 4df3_A 71 IELP--VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGV 148 (233)
T ss_dssp SCCC--CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCE
T ss_pred hhcC--CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceE
Confidence 4455 799999999999999999999987 6888999999965 776664 367899998888542 1258
Q ss_pred cEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHH
Q 030291 75 DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGS 154 (180)
Q Consensus 75 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (180)
|+|++. +.+..+.. .++.++.++||| ||.++++........ . .. .....++..+
T Consensus 149 DvVf~d--~~~~~~~~--~~l~~~~r~LKp---GG~lvI~ik~r~~d~--------~-~p----------~~~~~~~ev~ 202 (233)
T 4df3_A 149 DGLYAD--VAQPEQAA--IVVRNARFFLRD---GGYMLMAIKARSIDV--------T-TE----------PSEVYKREIK 202 (233)
T ss_dssp EEEEEC--CCCTTHHH--HHHHHHHHHEEE---EEEEEEEEECCHHHH--------H-TC----------CCHHHHHHHH
T ss_pred EEEEEe--ccCChhHH--HHHHHHHHhccC---CCEEEEEEecccCCC--------C-CC----------hHHHHHHHHH
Confidence 988864 33444554 779999999999 999888753221100 0 00 0001133456
Q ss_pred HHHHcCCeEEEEeecCC
Q 030291 155 LFVNAGFTHYKIAPIFG 171 (180)
Q Consensus 155 ~l~~aGf~~~~~~~~~~ 171 (180)
.|+++||++++.....+
T Consensus 203 ~L~~~GF~l~e~i~L~p 219 (233)
T 4df3_A 203 TLMDGGLEIKDVVHLDP 219 (233)
T ss_dssp HHHHTTCCEEEEEECTT
T ss_pred HHHHCCCEEEEEEccCC
Confidence 78899999999888755
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-15 Score=107.14 Aligned_cols=120 Identities=15% Similarity=0.208 Sum_probs=95.3
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCccc---CCCc
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQF---IPPS 74 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~---~~~~ 74 (180)
+++.+. ..++.+|||+|||+|.++..+++..|..+++++|+++ +++.+++ ..++++.++|..+. .+.|
T Consensus 32 ~l~~l~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 109 (204)
T 3e05_A 32 TLSKLR--LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDP 109 (204)
T ss_dssp HHHHTT--CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCC
T ss_pred HHHHcC--CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCC
Confidence 344455 6778999999999999999999998889999999965 8888864 36899999998653 2469
Q ss_pred cEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHH
Q 030291 75 DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGS 154 (180)
Q Consensus 75 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (180)
|+|++...++ +.. .+++++.++|+| ||.+++..... .+.+++.+
T Consensus 110 D~i~~~~~~~---~~~--~~l~~~~~~Lkp---gG~l~~~~~~~----------------------------~~~~~~~~ 153 (204)
T 3e05_A 110 DRVFIGGSGG---MLE--EIIDAVDRRLKS---EGVIVLNAVTL----------------------------DTLTKAVE 153 (204)
T ss_dssp SEEEESCCTT---CHH--HHHHHHHHHCCT---TCEEEEEECBH----------------------------HHHHHHHH
T ss_pred CEEEECCCCc---CHH--HHHHHHHHhcCC---CeEEEEEeccc----------------------------ccHHHHHH
Confidence 9999988775 333 789999999999 89888854321 13467778
Q ss_pred HHHHcCCe
Q 030291 155 LFVNAGFT 162 (180)
Q Consensus 155 ~l~~aGf~ 162 (180)
.++++||.
T Consensus 154 ~l~~~g~~ 161 (204)
T 3e05_A 154 FLEDHGYM 161 (204)
T ss_dssp HHHHTTCE
T ss_pred HHHHCCCc
Confidence 88999983
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-16 Score=113.14 Aligned_cols=100 Identities=17% Similarity=0.276 Sum_probs=83.3
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----CCCeeEEecCCcccC--CCccEEEecccccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----TDNLKYIEGDMFQFI--PPSDAFFFKTVFHF 85 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----~~~~~~~~~d~~~~~--~~~D~v~~~~~l~~ 85 (180)
..++.+|||||||+|.++..+++.. .+++++|+++ +++.+++ ..++++.++|+.+.. ..||+|+++.+++|
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 126 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYY 126 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGG
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHh
Confidence 4567899999999999999998884 5899999966 8877764 458999999996633 36999999999999
Q ss_pred CChH-HHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 86 FDDE-DCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 86 ~~~~-~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
++++ ....+++++.++|+| ||.+++....
T Consensus 127 ~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~ 156 (216)
T 3ofk_A 127 LEDMTQMRTAIDNMVKMLAP---GGHLVFGSAR 156 (216)
T ss_dssp SSSHHHHHHHHHHHHHTEEE---EEEEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHcCC---CCEEEEEecC
Confidence 9974 455889999999999 8888887653
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=4.5e-16 Score=111.58 Aligned_cols=146 Identities=10% Similarity=-0.002 Sum_probs=90.3
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCc-h-hhccC---CC------CCCeeEEecCCcccCC-CccEEEec
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLP-H-AVTDM---PQ------TDNLKYIEGDMFQFIP-PSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~-~-~~~~a---~~------~~~~~~~~~d~~~~~~-~~D~v~~~ 80 (180)
.+++.+|||||||+|.++..+++..++.+++++|++ + |++.| ++ ..++.+.++|+.+... .+|.|.+.
T Consensus 22 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i 101 (225)
T 3p2e_A 22 GQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSI 101 (225)
T ss_dssp TTCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEE
T ss_pred CCCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEE
Confidence 356789999999999999999988889999999997 6 65444 43 3579999999854311 24555444
Q ss_pred cccccCChH------HHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHH
Q 030291 81 TVFHFFDDE------DCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGS 154 (180)
Q Consensus 81 ~~l~~~~~~------~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (180)
.+...++.. ....++++++++||| ||.+++....... ... . . ................+++.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~r~Lkp---GG~l~i~~~~~~~--~~~-~-~----~~~~~~~~~~~~~~~~~el~~ 170 (225)
T 3p2e_A 102 SILFPWGTLLEYVIKPNRDILSNVADLAKK---EAHFEFVTTYSDS--YEE-A-E----IKKRGLPLLSKAYFLSEQYKA 170 (225)
T ss_dssp EEESCCHHHHHHHHTTCHHHHHHHHTTEEE---EEEEEEEECCCC----------------------CCHHHHHSHHHHH
T ss_pred EEeCCCcHHhhhhhcchHHHHHHHHHhcCC---CcEEEEEEecccc--chh-c-h----hhhcCCCCCChhhcchHHHHH
Confidence 333222211 012679999999999 8888884432222 100 0 0 000000000001112235999
Q ss_pred HHHHcCCeEEEEeec
Q 030291 155 LFVNAGFTHYKIAPI 169 (180)
Q Consensus 155 ~l~~aGf~~~~~~~~ 169 (180)
.++++||++.+....
T Consensus 171 ~l~~aGf~v~~~~~~ 185 (225)
T 3p2e_A 171 ELSNSGFRIDDVKEL 185 (225)
T ss_dssp HHHHHTCEEEEEEEE
T ss_pred HHHHcCCCeeeeeec
Confidence 999999998887654
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.4e-16 Score=113.58 Aligned_cols=105 Identities=13% Similarity=0.086 Sum_probs=80.9
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC--C-CCeeEEecCCc-----ccCCCcc
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ--T-DNLKYIEGDMF-----QFIPPSD 75 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~--~-~~~~~~~~d~~-----~~~~~~D 75 (180)
+++.+. +.++.+|||||||+|.++..+++. +.+++++|+++ |++.+++ . ..+.....+.. ...+.||
T Consensus 37 il~~l~--l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~fD 112 (261)
T 3iv6_A 37 DIFLEN--IVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHFD 112 (261)
T ss_dssp HHHTTT--CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCCS
T ss_pred HHHhcC--CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCcc
Confidence 445555 677889999999999999999987 66899999976 9988875 1 12222222221 1124699
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 76 AFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 76 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
+|+++.++||+..++...+++++.++| | ||.++++...
T Consensus 113 ~Vv~~~~l~~~~~~~~~~~l~~l~~lL-P---GG~l~lS~~~ 150 (261)
T 3iv6_A 113 FVLNDRLINRFTTEEARRACLGMLSLV-G---SGTVRASVKL 150 (261)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHH-T---TSEEEEEEEB
T ss_pred EEEEhhhhHhCCHHHHHHHHHHHHHhC-c---CcEEEEEecc
Confidence 999999999998888788999999999 9 9999987543
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-15 Score=124.25 Aligned_cols=101 Identities=10% Similarity=0.157 Sum_probs=85.0
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCch-hhccCCC------------CCCeeEEecCCcc-c--CCCcc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPH-AVTDMPQ------------TDNLKYIEGDMFQ-F--IPPSD 75 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~-~~~~a~~------------~~~~~~~~~d~~~-~--~~~~D 75 (180)
..++.+|||||||+|.++..+++.. +..+++++|+++ +++.|++ ..++++.++|+.+ + ...||
T Consensus 719 ~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFD 798 (950)
T 3htx_A 719 ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVD 798 (950)
T ss_dssp HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCC
T ss_pred ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCee
Confidence 3478899999999999999999887 457999999976 8888754 2579999999965 2 23699
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 76 AFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 76 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
+|++..+++|++++....+++++.++|+| | .+++..++
T Consensus 799 lVV~~eVLeHL~dp~l~~~L~eI~RvLKP---G-~LIISTPN 836 (950)
T 3htx_A 799 IGTCLEVIEHMEEDQACEFGEKVLSLFHP---K-LLIVSTPN 836 (950)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHTTCC---S-EEEEEECB
T ss_pred EEEEeCchhhCChHHHHHHHHHHHHHcCC---C-EEEEEecC
Confidence 99999999999998877899999999999 5 77776654
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=6.9e-16 Score=115.66 Aligned_cols=100 Identities=18% Similarity=0.177 Sum_probs=80.1
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------------CCCeeEEecCCccc-----C--C
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------------TDNLKYIEGDMFQF-----I--P 72 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------------~~~~~~~~~d~~~~-----~--~ 72 (180)
+++.+|||||||+|.++..+++. +..+++++|+++ +++.+++ ..++++.++|+.+. . +
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 111 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP 111 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred CCCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence 46789999999999999998874 477999999966 8887764 12789999999652 2 2
Q ss_pred --CccEEEeccccccC-Ch-HHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 73 --PSDAFFFKTVFHFF-DD-EDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 73 --~~D~v~~~~~l~~~-~~-~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
.||+|+++.++||+ .+ +....+++++.++|+| ||.+++..+.
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~~ 157 (313)
T 3bgv_A 112 QMCFDICSCQFVCHYSFESYEQADMMLRNACERLSP---GGYFIGTTPN 157 (313)
T ss_dssp TCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEE---EEEEEEEEEC
T ss_pred CCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCC---CcEEEEecCC
Confidence 69999999999998 33 4455899999999999 8888887654
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.4e-14 Score=102.69 Aligned_cols=136 Identities=12% Similarity=0.125 Sum_probs=92.7
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hh----ccCCCCCCeeEEecCCccc------CCCccEEEecc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AV----TDMPQTDNLKYIEGDMFQF------IPPSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~----~~a~~~~~~~~~~~d~~~~------~~~~D~v~~~~ 81 (180)
++++.+|||+|||+|..+..+++..+..+++++|+++ ++ +.+++..++.+..+|.... ...||+|+++.
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~ 134 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDI 134 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECC
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEec
Confidence 5678899999999999999999987667899999965 54 3343356888888888542 13699999873
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHH----HHHH
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWG----SLFV 157 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~ 157 (180)
.+ ......+++++.++||| ||.+++.-...+ .+ ...+.+++. +.++
T Consensus 135 -~~---~~~~~~~l~~~~r~Lkp---gG~l~i~~~~~~--------------~~---------~~~~~~~~~~~~~~~l~ 184 (210)
T 1nt2_A 135 -AQ---KNQIEILKANAEFFLKE---KGEVVIMVKARS--------------ID---------STAEPEEVFKSVLKEME 184 (210)
T ss_dssp -CS---TTHHHHHHHHHHHHEEE---EEEEEEEEEHHH--------------HC---------TTSCHHHHHHHHHHHHH
T ss_pred -cC---hhHHHHHHHHHHHHhCC---CCEEEEEEecCC--------------cc---------ccCCHHHHHHHHHHHHH
Confidence 22 12223569999999999 888888732110 00 011223321 2378
Q ss_pred HcCCeEEEEeecCC---ceeEEEEe
Q 030291 158 NAGFTHYKIAPIFG---IKSLIEVY 179 (180)
Q Consensus 158 ~aGf~~~~~~~~~~---~~~~~~~~ 179 (180)
++ |++++.....+ .+.++.++
T Consensus 185 ~~-f~~~~~~~~~p~~~~h~~~~~~ 208 (210)
T 1nt2_A 185 GD-FKIVKHGSLMPYHRDHIFIHAY 208 (210)
T ss_dssp TT-SEEEEEEECTTTCTTEEEEEEE
T ss_pred hh-cEEeeeecCCCCCCCcEEEEEE
Confidence 88 99999887733 44555554
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1e-14 Score=107.48 Aligned_cols=134 Identities=18% Similarity=0.228 Sum_probs=101.5
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcccC--CCccEEEecc---
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQFI--PPSDAFFFKT--- 81 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~~--~~~D~v~~~~--- 81 (180)
.++.+|||+|||+|.++..+++..|..+++++|+++ +++.+++ ..++++.++|+.+.. ..||+|+++-
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~fD~Iv~npPy~ 187 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYI 187 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCB
T ss_pred cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCccEEEECCCCC
Confidence 456799999999999999999998899999999966 8887764 247999999997644 3699999973
Q ss_pred ----------ccccCCh----------HHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEee
Q 030291 82 ----------VFHFFDD----------EDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFN 141 (180)
Q Consensus 82 ----------~l~~~~~----------~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (180)
+++|.+. .....+++++.+.|+| ||.+++..
T Consensus 188 ~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~Lkp---gG~l~~~~-------------------------- 238 (276)
T 2b3t_A 188 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVS---GGFLLLEH-------------------------- 238 (276)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEE---EEEEEEEC--------------------------
T ss_pred CccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCC---CCEEEEEE--------------------------
Confidence 3333331 2345789999999999 77777631
Q ss_pred cCCcccCHHHHHHHHHHcCCeEEEEee-cCCceeEEEEe
Q 030291 142 VGGKERTEQEWGSLFVNAGFTHYKIAP-IFGIKSLIEVY 179 (180)
Q Consensus 142 ~~~~~~~~~~~~~~l~~aGf~~~~~~~-~~~~~~~~~~~ 179 (180)
...+.+++.++++++||+.+++.. ..+...++.++
T Consensus 239 ---~~~~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~ 274 (276)
T 2b3t_A 239 ---GWQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGR 274 (276)
T ss_dssp ---CSSCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEE
T ss_pred ---CchHHHHHHHHHHHCCCcEEEEEecCCCCCcEEEEE
Confidence 112457889999999999777654 45555555543
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.61 E-value=1e-15 Score=105.43 Aligned_cols=100 Identities=11% Similarity=0.221 Sum_probs=80.1
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccC----C
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFI----P 72 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~----~ 72 (180)
+++.+. ..++.+|||+|||+|.++..+++.+|+.+++++|+++ +++.+++ ..++ ++.+|..+.. +
T Consensus 17 ~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~ 93 (178)
T 3hm2_A 17 AISALA--PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPD 93 (178)
T ss_dssp HHHHHC--CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCS
T ss_pred HHHHhc--ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCC
Confidence 344444 5678899999999999999999998889999999966 8887764 2377 7888875522 4
Q ss_pred CccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 73 PSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 73 ~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
.||+|++...+++ . .+++++.++|+| ||.+++...
T Consensus 94 ~~D~i~~~~~~~~----~--~~l~~~~~~L~~---gG~l~~~~~ 128 (178)
T 3hm2_A 94 NPDVIFIGGGLTA----P--GVFAAAWKRLPV---GGRLVANAV 128 (178)
T ss_dssp CCSEEEECC-TTC----T--THHHHHHHTCCT---TCEEEEEEC
T ss_pred CCCEEEECCcccH----H--HHHHHHHHhcCC---CCEEEEEee
Confidence 6999999999887 2 779999999999 899888653
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=8.6e-15 Score=105.29 Aligned_cols=133 Identities=11% Similarity=0.101 Sum_probs=90.5
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCch-h----hccCCCCCCeeEEecCCccc------CCCccEEEec
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPH-A----VTDMPQTDNLKYIEGDMFQF------IPPSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~-~----~~~a~~~~~~~~~~~d~~~~------~~~~D~v~~~ 80 (180)
+.++.+|||+|||+|.++..+++.. +..+++++|+++ + ++.+++..++++.++|+.+. ...||+|++.
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 6678899999999999999999885 667999999964 4 44444457899999999652 2369999985
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcC
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAG 160 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 160 (180)
.. .......++.++.++|+| ||.+++. ......... ... ...+. .+ .+.|+++|
T Consensus 155 ~~----~~~~~~~~~~~~~~~Lkp---gG~l~i~-~~~~~~~~~---------~~~-------~~~~~-~~-~~~l~~~G 208 (233)
T 2ipx_A 155 VA----QPDQTRIVALNAHTFLRN---GGHFVIS-IKANCIDST---------ASA-------EAVFA-SE-VKKMQQEN 208 (233)
T ss_dssp CC----CTTHHHHHHHHHHHHEEE---EEEEEEE-EEHHHHCSS---------SCH-------HHHHH-HH-HHTTGGGT
T ss_pred CC----CccHHHHHHHHHHHHcCC---CeEEEEE-EcccccccC---------CCH-------HHHHH-HH-HHHHHHCC
Confidence 44 222223568899999999 8888773 322100000 000 00011 23 48889999
Q ss_pred CeEEEEeecCC
Q 030291 161 FTHYKIAPIFG 171 (180)
Q Consensus 161 f~~~~~~~~~~ 171 (180)
|++++......
T Consensus 209 f~~~~~~~~~~ 219 (233)
T 2ipx_A 209 MKPQEQLTLEP 219 (233)
T ss_dssp EEEEEEEECTT
T ss_pred CceEEEEecCC
Confidence 99988766543
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=9.5e-15 Score=106.49 Aligned_cols=126 Identities=18% Similarity=0.218 Sum_probs=98.8
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCcccC--CCccEEEeccccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQFI--PPSDAFFFKTVFH 84 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~~~--~~~D~v~~~~~l~ 84 (180)
..++.+|||+|||+|.++..+++..+ +++++|+++ +++.+++ ...+++.++|..+.. ..||+|+++...+
T Consensus 118 ~~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~ 195 (254)
T 2nxc_A 118 LRPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE 195 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcHH
Confidence 35678999999999999999888754 899999965 8877764 112889999886533 4699999976544
Q ss_pred cCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEE
Q 030291 85 FFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHY 164 (180)
Q Consensus 85 ~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 164 (180)
+ ...+++++.++|+| ||.+++++... .+.+++.+.++++||+++
T Consensus 196 ~-----~~~~l~~~~~~Lkp---gG~lils~~~~----------------------------~~~~~v~~~l~~~Gf~~~ 239 (254)
T 2nxc_A 196 L-----HAALAPRYREALVP---GGRALLTGILK----------------------------DRAPLVREAMAGAGFRPL 239 (254)
T ss_dssp H-----HHHHHHHHHHHEEE---EEEEEEEEEEG----------------------------GGHHHHHHHHHHTTCEEE
T ss_pred H-----HHHHHHHHHHHcCC---CCEEEEEeecc----------------------------CCHHHHHHHHHHCCCEEE
Confidence 2 34789999999999 88888865422 135788999999999999
Q ss_pred EEeecCCceeEE
Q 030291 165 KIAPIFGIKSLI 176 (180)
Q Consensus 165 ~~~~~~~~~~~~ 176 (180)
++....++..+.
T Consensus 240 ~~~~~~~W~~l~ 251 (254)
T 2nxc_A 240 EEAAEGEWVLLA 251 (254)
T ss_dssp EEEEETTEEEEE
T ss_pred EEeccCCeEEEE
Confidence 998887776654
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.60 E-value=5.4e-15 Score=102.86 Aligned_cols=104 Identities=13% Similarity=0.284 Sum_probs=82.2
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CC--CeeEEecCCcccC--CC
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TD--NLKYIEGDMFQFI--PP 73 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~--~~~~~~~d~~~~~--~~ 73 (180)
+++.+. ..++.+|||+|||+|.++..+++. ..+++++|+++ +++.+++ .. ++++.++|+.+.. ..
T Consensus 44 l~~~~~--~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 119 (194)
T 1dus_A 44 LVENVV--VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRK 119 (194)
T ss_dssp HHHHCC--CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSC
T ss_pred HHHHcc--cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccCC
Confidence 445555 567889999999999999999888 77899999965 8777764 23 3999999996643 36
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 74 SDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 74 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
||+|+++..+++. ......+++++.++|+| ||.+++...
T Consensus 120 ~D~v~~~~~~~~~-~~~~~~~l~~~~~~L~~---gG~l~~~~~ 158 (194)
T 1dus_A 120 YNKIITNPPIRAG-KEVLHRIIEEGKELLKD---NGEIWVVIQ 158 (194)
T ss_dssp EEEEEECCCSTTC-HHHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred ceEEEECCCcccc-hhHHHHHHHHHHHHcCC---CCEEEEEEC
Confidence 9999998887752 33445889999999999 888888764
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.59 E-value=4.5e-14 Score=101.26 Aligned_cols=134 Identities=11% Similarity=0.061 Sum_probs=90.3
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHH-CCCCeEEEeeCch-hh----ccCCCCCCeeEEecCCccc------CCCccEEEec
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEA-FPGIKCTVLDLPH-AV----TDMPQTDNLKYIEGDMFQF------IPPSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~-~~~~~~~~~D~~~-~~----~~a~~~~~~~~~~~d~~~~------~~~~D~v~~~ 80 (180)
++++.+|||+|||+|.++..+++. .+..+++++|+++ ++ +.+++..|+.+.++|+..+ .+.||+|++.
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d 153 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVD 153 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEec
Confidence 678999999999999999999876 4677999999965 64 3333457899999998542 1369999987
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcC
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAG 160 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 160 (180)
... ++.. ..+...+.++||| ||.++++....... . +... . -..++....|+++|
T Consensus 154 ~a~---~~~~-~il~~~~~~~Lkp---GG~lvisik~~~~d--------------~---t~~~-~-e~~~~~~~~L~~~g 207 (232)
T 3id6_C 154 IAQ---PDQT-DIAIYNAKFFLKV---NGDMLLVIKARSID--------------V---TKDP-K-EIYKTEVEKLENSN 207 (232)
T ss_dssp CCC---TTHH-HHHHHHHHHHEEE---EEEEEEEEC------------------------CCS-S-SSTTHHHHHHHHTT
T ss_pred CCC---hhHH-HHHHHHHHHhCCC---CeEEEEEEccCCcc--------------c---CCCH-H-HHHHHHHHHHHHCC
Confidence 553 3332 1334556669999 89888873221100 0 0000 0 01134556788899
Q ss_pred CeEEEEeecCCc
Q 030291 161 FTHYKIAPIFGI 172 (180)
Q Consensus 161 f~~~~~~~~~~~ 172 (180)
|++++.....+.
T Consensus 208 f~~~~~~~l~p~ 219 (232)
T 3id6_C 208 FETIQIINLDPY 219 (232)
T ss_dssp EEEEEEEECTTT
T ss_pred CEEEEEeccCCC
Confidence 999999887543
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.59 E-value=6.2e-15 Score=106.54 Aligned_cols=121 Identities=17% Similarity=0.206 Sum_probs=92.2
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcc-c-----CCCccEEEe
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ-F-----IPPSDAFFF 79 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~-~-----~~~~D~v~~ 79 (180)
++++.+|||||||+|..+..++...++.+++++|+++ +++.+++ ..+++++++|+.+ . ...||+|++
T Consensus 68 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~ 147 (240)
T 1xdz_A 68 FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA 147 (240)
T ss_dssp GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred cCCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEE
Confidence 3567899999999999999999888889999999966 8887764 3479999999855 2 236999999
Q ss_pred ccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHc
Q 030291 80 KTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNA 159 (180)
Q Consensus 80 ~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 159 (180)
..+ .+.. .+++.+.++|+| ||.+++..... . ....+++.+.+++.
T Consensus 148 ~~~----~~~~--~~l~~~~~~Lkp---gG~l~~~~g~~----~----------------------~~~~~~~~~~l~~~ 192 (240)
T 1xdz_A 148 RAV----ARLS--VLSELCLPLVKK---NGLFVALKAAS----A----------------------EEELNAGKKAITTL 192 (240)
T ss_dssp ECC----SCHH--HHHHHHGGGEEE---EEEEEEEECC-----C----------------------HHHHHHHHHHHHHT
T ss_pred ecc----CCHH--HHHHHHHHhcCC---CCEEEEEeCCC----c----------------------hHHHHHHHHHHHHc
Confidence 763 3444 889999999999 88887753100 0 00135677889999
Q ss_pred CCeEEEEee
Q 030291 160 GFTHYKIAP 168 (180)
Q Consensus 160 Gf~~~~~~~ 168 (180)
||++.++..
T Consensus 193 g~~~~~~~~ 201 (240)
T 1xdz_A 193 GGELENIHS 201 (240)
T ss_dssp TEEEEEEEE
T ss_pred CCeEeEEEE
Confidence 999877654
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.59 E-value=8.5e-16 Score=108.71 Aligned_cols=125 Identities=17% Similarity=0.206 Sum_probs=83.1
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCCC-----CCeeEEecCCccc--C-----CCccEEEec
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQT-----DNLKYIEGDMFQF--I-----PPSDAFFFK 80 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~-----~~~~~~~~d~~~~--~-----~~~D~v~~~ 80 (180)
.++.+|||+|||+|.++..+++.+++.+++++|+++ +++.+++. .++++.++|+.+. . ..||+|+++
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~n 108 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVSN 108 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHTTCCBSEEEEC
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhccCcccEEEEC
Confidence 678899999999999999999999888999999965 88888761 1678888888652 2 579999996
Q ss_pred ccccc------CChHHH------------------HHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccce
Q 030291 81 TVFHF------FDDEDC------------------LKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDI 136 (180)
Q Consensus 81 ~~l~~------~~~~~~------------------~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (180)
-.++. ++.... ..+++++.++|+| ||.+++.+..
T Consensus 109 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~------------------- 166 (215)
T 4dzr_A 109 PPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLAR---GRAGVFLEVG------------------- 166 (215)
T ss_dssp CCCCC------------------------CTTHHHHHHHTCCGGGBCS---SSEEEEEECT-------------------
T ss_pred CCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcC---CCeEEEEEEC-------------------
Confidence 44432 222211 5789999999999 8885554421
Q ss_pred eeEeecCCcccCHHHHHHHHH--HcCCeEEEEeec
Q 030291 137 FMNFNVGGKERTEQEWGSLFV--NAGFTHYKIAPI 169 (180)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~l~--~aGf~~~~~~~~ 169 (180)
....+++.+.++ ++||..+++...
T Consensus 167 ---------~~~~~~~~~~l~~~~~gf~~~~~~~~ 192 (215)
T 4dzr_A 167 ---------HNQADEVARLFAPWRERGFRVRKVKD 192 (215)
T ss_dssp ---------TSCHHHHHHHTGGGGGGTEECCEEEC
T ss_pred ---------CccHHHHHHHHHHhhcCCceEEEEEe
Confidence 113466778888 889987766654
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1e-14 Score=107.67 Aligned_cols=96 Identities=14% Similarity=0.236 Sum_probs=79.0
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcc-cCCCccEEEeccccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ-FIPPSDAFFFKTVFH 84 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~-~~~~~D~v~~~~~l~ 84 (180)
++++.+|||||||+|.++..++...++++++++|+++ +++.|++ ..++++.++|..+ +...||+|++...
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~~a~-- 197 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVAAL-- 197 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEECTT--
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEECCC--
Confidence 6789999999999998776666666799999999965 9998875 3689999999965 3347999998655
Q ss_pred cCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 85 FFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 85 ~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
.++.. ++++++.++||| ||.+++.+.
T Consensus 198 -~~d~~--~~l~el~r~LkP---GG~Lvv~~~ 223 (298)
T 3fpf_A 198 -AEPKR--RVFRNIHRYVDT---ETRIIYRTY 223 (298)
T ss_dssp -CSCHH--HHHHHHHHHCCT---TCEEEEEEC
T ss_pred -ccCHH--HHHHHHHHHcCC---CcEEEEEcC
Confidence 35555 889999999999 999998763
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.8e-15 Score=107.39 Aligned_cols=114 Identities=11% Similarity=0.096 Sum_probs=88.0
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-CCCeeEEecCCcc--cC---CCccEEEecccccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-TDNLKYIEGDMFQ--FI---PPSDAFFFKTVFHF 85 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-~~~~~~~~~d~~~--~~---~~~D~v~~~~~l~~ 85 (180)
.+++.+|||||||+|.++..+++. +.+++++|+++ +++.+++ ..++++.++|+.+ +. ..||+|+++
T Consensus 46 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~----- 118 (226)
T 3m33_A 46 LTPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR----- 118 (226)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE-----
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC-----
Confidence 356789999999999999999988 67899999966 8888876 5789999999954 22 369999987
Q ss_pred CChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEEE
Q 030291 86 FDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYK 165 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 165 (180)
.+.. .+++++.++|+| ||.++.. ....+.+++.+.++++||+.+.
T Consensus 119 -~~~~--~~l~~~~~~Lkp---gG~l~~~-----------------------------~~~~~~~~~~~~l~~~Gf~~~~ 163 (226)
T 3m33_A 119 -RGPT--SVILRLPELAAP---DAHFLYV-----------------------------GPRLNVPEVPERLAAVGWDIVA 163 (226)
T ss_dssp -SCCS--GGGGGHHHHEEE---EEEEEEE-----------------------------ESSSCCTHHHHHHHHTTCEEEE
T ss_pred -CCHH--HHHHHHHHHcCC---CcEEEEe-----------------------------CCcCCHHHHHHHHHHCCCeEEE
Confidence 2333 779999999999 7777710 0123456788888888888776
Q ss_pred Eee
Q 030291 166 IAP 168 (180)
Q Consensus 166 ~~~ 168 (180)
+..
T Consensus 164 ~~~ 166 (226)
T 3m33_A 164 EDH 166 (226)
T ss_dssp EEE
T ss_pred EEe
Confidence 653
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.58 E-value=4e-15 Score=102.58 Aligned_cols=96 Identities=11% Similarity=0.130 Sum_probs=76.1
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----C--CCeeEEecCCcccC--CCccEEEeccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----T--DNLKYIEGDMFQFI--PPSDAFFFKTV 82 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~--~~~~~~~~d~~~~~--~~~D~v~~~~~ 82 (180)
++++.+|||+|||+|.++..+....|+++++++|+++ |++.+++ . .++++ .|..... ..||+|++..+
T Consensus 47 l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa~k~ 124 (200)
T 3fzg_A 47 IKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFLLKM 124 (200)
T ss_dssp SCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEEETC
T ss_pred cCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhHhhH
Confidence 4678999999999999999999999999999999976 9888875 2 24544 5664432 35999999999
Q ss_pred cccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 83 FHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 83 l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
+|++++.+ ..+.++.+.|+| |+++++-+
T Consensus 125 LHlL~~~~--~al~~v~~~L~p----ggvfISfp 152 (200)
T 3fzg_A 125 LPVLKQQD--VNILDFLQLFHT----QNFVISFP 152 (200)
T ss_dssp HHHHHHTT--CCHHHHHHTCEE----EEEEEEEE
T ss_pred HHhhhhhH--HHHHHHHHHhCC----CCEEEEeC
Confidence 99994444 557799999999 55555443
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=4.6e-15 Score=109.03 Aligned_cols=96 Identities=17% Similarity=0.305 Sum_probs=77.8
Q ss_pred CCCeEEEeCCcccH----HHHHHHHHCC----CCeEEEeeCch-hhccCCCC----------------------------
Q 030291 15 GLRSMVDVGGGTGA----FARIISEAFP----GIKCTVLDLPH-AVTDMPQT---------------------------- 57 (180)
Q Consensus 15 ~~~~iLdiG~G~G~----~~~~l~~~~~----~~~~~~~D~~~-~~~~a~~~---------------------------- 57 (180)
++.+|+|+|||+|. ++..+++..+ +.+++++|+++ |++.|++.
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 35799999999998 4555666643 46899999976 88887641
Q ss_pred ---------CCeeEEecCCcc-cC---CCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEE
Q 030291 58 ---------DNLKYIEGDMFQ-FI---PPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 58 ---------~~~~~~~~d~~~-~~---~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
.+++|.++|+.+ +. +.||+|+|..+++|++++.+.++++++.++|+| ||.+++
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~p---gG~L~l 250 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKP---DGLLFA 250 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEE---EEEEEE
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCC---CcEEEE
Confidence 258899999976 23 369999999999999998888999999999999 777766
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.57 E-value=7.2e-14 Score=99.98 Aligned_cols=140 Identities=14% Similarity=0.111 Sum_probs=96.0
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCch-hhccCC----CCCCeeEEecCCccc------CCCccEEEec
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPH-AVTDMP----QTDNLKYIEGDMFQF------IPPSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~-~~~~a~----~~~~~~~~~~d~~~~------~~~~D~v~~~ 80 (180)
+.++.+|||+|||+|.++..+++.. +..+++++|.++ +++.++ +..++++.++|+.+. ...||+|++.
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 5678899999999999999999874 567999999965 655543 347899999999652 1259999976
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcC
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAG 160 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 160 (180)
.. .++ ....++.++.++|+| ||.+++. ......... . .......+++.++ +++
T Consensus 151 ~~---~~~-~~~~~l~~~~~~Lkp---gG~l~~~-~~~~~~~~~---------~--------~~~~~~~~~l~~l-~~~- 203 (227)
T 1g8a_A 151 VA---QPT-QAKILIDNAEVYLKR---GGYGMIA-VKSRSIDVT---------K--------EPEQVFREVEREL-SEY- 203 (227)
T ss_dssp CC---STT-HHHHHHHHHHHHEEE---EEEEEEE-EEGGGTCTT---------S--------CHHHHHHHHHHHH-HTT-
T ss_pred CC---CHh-HHHHHHHHHHHhcCC---CCEEEEE-EecCCCCCC---------C--------ChhhhhHHHHHHH-Hhh-
Confidence 54 122 222559999999999 8888887 322111000 0 0012245667666 777
Q ss_pred CeEEEEeecCCc---eeEEEEe
Q 030291 161 FTHYKIAPIFGI---KSLIEVY 179 (180)
Q Consensus 161 f~~~~~~~~~~~---~~~~~~~ 179 (180)
|++++.....+. +.++.++
T Consensus 204 f~~~~~~~~~~~~~~~~~~~~~ 225 (227)
T 1g8a_A 204 FEVIERLNLEPYEKDHALFVVR 225 (227)
T ss_dssp SEEEEEEECTTTSSSEEEEEEE
T ss_pred ceeeeEeccCcccCCCEEEEEE
Confidence 999988877554 5555554
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.1e-14 Score=101.37 Aligned_cols=128 Identities=16% Similarity=0.172 Sum_probs=93.6
Q ss_pred ccCCCeEEEeCCc-ccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCc--ccC--CCccEEEecc
Q 030291 13 FQGLRSMVDVGGG-TGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMF--QFI--PPSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~G-~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~--~~~--~~~D~v~~~~ 81 (180)
++++.+|||+||| +|.++..+++.. ..+++++|+++ +++.+++ ..++++.++|.. ... ..||+|+++-
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np 131 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP 131 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC
Confidence 4678999999999 999999998886 67899999966 8888864 237999999952 232 4699999986
Q ss_pred ccccCChHH-----------------HHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCC
Q 030291 82 VFHFFDDED-----------------CLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGG 144 (180)
Q Consensus 82 ~l~~~~~~~-----------------~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (180)
.+++.++.. ...+++++.++|+| ||.+++.....
T Consensus 132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~-------------------------- 182 (230)
T 3evz_A 132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNP---GGKVALYLPDK-------------------------- 182 (230)
T ss_dssp CCC---------------CCSSSCHHHHHHHHHHGGGEEE---EEEEEEEEESC--------------------------
T ss_pred CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCC---CeEEEEEeccc--------------------------
Confidence 665543311 24789999999999 88888853210
Q ss_pred cccCHHHHHHHHHHcCCeEEEEeecCC
Q 030291 145 KERTEQEWGSLFVNAGFTHYKIAPIFG 171 (180)
Q Consensus 145 ~~~~~~~~~~~l~~aGf~~~~~~~~~~ 171 (180)
....+++.+.+++.||++..+....+
T Consensus 183 -~~~~~~~~~~l~~~g~~~~~~~~~~g 208 (230)
T 3evz_A 183 -EKLLNVIKERGIKLGYSVKDIKFKVG 208 (230)
T ss_dssp -HHHHHHHHHHHHHTTCEEEEEEECCC
T ss_pred -HhHHHHHHHHHHHcCCceEEEEecCC
Confidence 11346788899999998776654433
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.8e-14 Score=100.76 Aligned_cols=120 Identities=15% Similarity=0.231 Sum_probs=92.4
Q ss_pred cccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CC-CeeEEecCCccc---CCCc
Q 030291 6 VKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TD-NLKYIEGDMFQF---IPPS 74 (180)
Q Consensus 6 ~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~-~~~~~~~d~~~~---~~~~ 74 (180)
++.+. ..++.+|||+|||+|.++..+++. +.+++++|+++ +++.+++ .. ++++.++|+.+. .+.|
T Consensus 48 l~~l~--~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~ 123 (204)
T 3njr_A 48 LAALA--PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLP 123 (204)
T ss_dssp HHHHC--CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCC
T ss_pred HHhcC--CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCC
Confidence 34444 567889999999999999999888 77899999965 8888764 23 899999999662 3479
Q ss_pred cEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHH
Q 030291 75 DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGS 154 (180)
Q Consensus 75 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (180)
|+|++...+ +. . +++++.++|+| ||.+++..... -+..++.+
T Consensus 124 D~v~~~~~~----~~--~-~l~~~~~~Lkp---gG~lv~~~~~~----------------------------~~~~~~~~ 165 (204)
T 3njr_A 124 EAVFIGGGG----SQ--A-LYDRLWEWLAP---GTRIVANAVTL----------------------------ESETLLTQ 165 (204)
T ss_dssp SEEEECSCC----CH--H-HHHHHHHHSCT---TCEEEEEECSH----------------------------HHHHHHHH
T ss_pred CEEEECCcc----cH--H-HHHHHHHhcCC---CcEEEEEecCc----------------------------ccHHHHHH
Confidence 999987754 22 2 79999999999 89888855311 13466777
Q ss_pred HHHHcCCeEEEEe
Q 030291 155 LFVNAGFTHYKIA 167 (180)
Q Consensus 155 ~l~~aGf~~~~~~ 167 (180)
.+++.|+++.++.
T Consensus 166 ~l~~~g~~i~~i~ 178 (204)
T 3njr_A 166 LHARHGGQLLRID 178 (204)
T ss_dssp HHHHHCSEEEEEE
T ss_pred HHHhCCCcEEEEE
Confidence 8888898877654
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.4e-16 Score=113.78 Aligned_cols=96 Identities=10% Similarity=0.069 Sum_probs=74.8
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCcc---cC--CCccEEEe---
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQ---FI--PPSDAFFF--- 79 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~---~~--~~~D~v~~--- 79 (180)
.++.+|||||||+|..+..+++..+ .+++++|+++ +++.+++ ..++.+..+|..+ .. ..||.|+.
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~-~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~ 137 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred cCCCeEEEECCCccHHHHHHHHhCC-cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence 5678999999999999999887764 5899999965 8888864 4577888888743 22 35998874
Q ss_pred --ccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 80 --KTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 80 --~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
...++|.++.. .++++++++||| ||.+.+.+
T Consensus 138 ~~~~~~~~~~~~~--~~~~e~~rvLkP---GG~l~f~~ 170 (236)
T 3orh_A 138 PLSEETWHTHQFN--FIKNHAFRLLKP---GGVLTYCN 170 (236)
T ss_dssp CCBGGGTTTHHHH--HHHHTHHHHEEE---EEEEEECC
T ss_pred ecccchhhhcchh--hhhhhhhheeCC---CCEEEEEe
Confidence 45566666666 789999999999 88777643
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.57 E-value=5e-14 Score=100.00 Aligned_cols=98 Identities=16% Similarity=0.235 Sum_probs=77.4
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcc-c--C--CCccEEEeccc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ-F--I--PPSDAFFFKTV 82 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~-~--~--~~~D~v~~~~~ 82 (180)
++.+|||||||+|.++..+++..|+.+++++|++. ++..+++ ..+++++++|+.+ . . ..||+|+++..
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 46789999999999999999999999999999965 8887764 3689999999965 1 2 25999999865
Q ss_pred cccCChH------HHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 83 FHFFDDE------DCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 83 l~~~~~~------~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
..+.... ....+++++.++|+| ||.+++..
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~ 156 (214)
T 1yzh_A 121 DPWPKKRHEKRRLTYKTFLDTFKRILPE---NGEIHFKT 156 (214)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCT---TCEEEEEE
T ss_pred CCccccchhhhccCCHHHHHHHHHHcCC---CcEEEEEe
Confidence 4332211 113789999999999 88888754
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.56 E-value=3.4e-14 Score=100.91 Aligned_cols=98 Identities=17% Similarity=0.238 Sum_probs=76.6
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcc-c--C--CCccEEEeccc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ-F--I--PPSDAFFFKTV 82 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~-~--~--~~~D~v~~~~~ 82 (180)
+..+|||||||+|.++..+++.+|+.+++++|+++ ++..+++ ..+++++++|+.+ . . ..+|.|+++..
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 56789999999999999999999999999999966 8887764 3589999999865 1 2 36999987654
Q ss_pred cccCChH------HHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 83 FHFFDDE------DCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 83 l~~~~~~------~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
..+.... ....+++++.++|+| ||.+++..
T Consensus 118 ~p~~~~~~~~~rl~~~~~l~~~~~~Lkp---gG~l~~~t 153 (213)
T 2fca_A 118 DPWPKKRHEKRRLTYSHFLKKYEEVMGK---GGSIHFKT 153 (213)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTT---SCEEEEEE
T ss_pred CCCcCccccccccCcHHHHHHHHHHcCC---CCEEEEEe
Confidence 3222211 023789999999999 88888864
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.6e-15 Score=105.53 Aligned_cols=102 Identities=13% Similarity=0.134 Sum_probs=82.6
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----CCCeeEEecCCcc-cC--CCccEEEeccccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----TDNLKYIEGDMFQ-FI--PPSDAFFFKTVFH 84 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----~~~~~~~~~d~~~-~~--~~~D~v~~~~~l~ 84 (180)
++++.+|||+|||+|.++..+++..+. +++++|+++ +++.+++ ..++++.++|+.+ +. ..||+|++..+++
T Consensus 40 ~~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~ 118 (215)
T 2pxx_A 40 LRPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLD 118 (215)
T ss_dssp CCTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHH
T ss_pred cCCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchh
Confidence 467889999999999999999988543 799999966 8777764 3689999999865 32 3699999999888
Q ss_pred cCC-------------hHHHHHHHHHHHHhhccCCCCcEEEEEEeee
Q 030291 85 FFD-------------DEDCLKLLKKCREAIASNGERGKVLIIDIVI 118 (180)
Q Consensus 85 ~~~-------------~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~ 118 (180)
++. ......+++++.++|+| ||.+++.++..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~~~ 162 (215)
T 2pxx_A 119 ALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVP---GGRFISMTSAA 162 (215)
T ss_dssp HHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEE---EEEEEEEESCC
T ss_pred hhccccccccccccchhHHHHHHHHHHHHhCcC---CCEEEEEeCCC
Confidence 765 23445889999999999 89998887543
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.5e-14 Score=106.84 Aligned_cols=129 Identities=14% Similarity=0.108 Sum_probs=92.7
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----------CCCeeEEecCCccc-----CCCccEE
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----------TDNLKYIEGDMFQF-----IPPSDAF 77 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----------~~~~~~~~~d~~~~-----~~~~D~v 77 (180)
+++.+|||||||+|.++..+++..+..+++++|+++ +++.+++ ..++++..+|..+. ...||+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 567899999999999999999877778999999965 7776653 36899999998652 2369999
Q ss_pred EeccccccCChHHH--HHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHH
Q 030291 78 FFKTVFHFFDDEDC--LKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSL 155 (180)
Q Consensus 78 ~~~~~l~~~~~~~~--~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (180)
++....++.+.... .+++++++++|+| ||.+++.... ... .....+++.+.
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~~~~---~~~---------------------~~~~~~~~~~~ 226 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKP---DGICCNQGES---IWL---------------------DLELIEKMSRF 226 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEE---EEEEEEEECC---TTT---------------------CHHHHHHHHHH
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCC---CcEEEEecCC---ccc---------------------chHHHHHHHHH
Confidence 99766555443322 4889999999999 7777775311 100 11245778899
Q ss_pred HHHcCCeEEEEeec
Q 030291 156 FVNAGFTHYKIAPI 169 (180)
Q Consensus 156 l~~aGf~~~~~~~~ 169 (180)
++++||..++....
T Consensus 227 l~~~GF~~v~~~~~ 240 (304)
T 3bwc_A 227 IRETGFASVQYALM 240 (304)
T ss_dssp HHHHTCSEEEEEEC
T ss_pred HHhCCCCcEEEEEe
Confidence 99999998877643
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.5e-14 Score=100.39 Aligned_cols=100 Identities=17% Similarity=0.232 Sum_probs=75.1
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcc---cC-CCccEEEecc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ---FI-PPSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~---~~-~~~D~v~~~~ 81 (180)
++++.+|||+|||+|.++..+++. +.+++++|+++ +++.+++ ..++++.+.+... .. ..||+|+++.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~ 97 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNL 97 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeC
Confidence 467889999999999999999888 77899999966 8888875 2689999977644 12 2599998863
Q ss_pred -ccccC------ChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 82 -VFHFF------DDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 82 -~l~~~------~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
.+++. .......+++++.++|+| ||.+++..+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~ 137 (185)
T 3mti_A 98 GYLPSADKSVITKPHTTLEAIEKILDRLEV---GGRLAIMIYY 137 (185)
T ss_dssp C-----------CHHHHHHHHHHHHHHEEE---EEEEEEEEC-
T ss_pred CCCCCcchhcccChhhHHHHHHHHHHhcCC---CcEEEEEEeC
Confidence 22210 123445789999999999 8888887643
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=4.2e-15 Score=113.80 Aligned_cols=112 Identities=12% Similarity=0.138 Sum_probs=86.8
Q ss_pred ccccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC---------------CCCeeEEecC
Q 030291 3 TLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ---------------TDNLKYIEGD 66 (180)
Q Consensus 3 ~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~---------------~~~~~~~~~d 66 (180)
..+++.+. +.++.+|||||||+|.++..++...+..+++|+|+++ +++.|++ ..+++++++|
T Consensus 163 ~~il~~l~--l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD 240 (438)
T 3uwp_A 163 AQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 240 (438)
T ss_dssp HHHHHHHC--CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECC
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECc
Confidence 34556666 7889999999999999999999887555699999965 6555542 2689999999
Q ss_pred Ccc-cC----CCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCC
Q 030291 67 MFQ-FI----PPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKE 122 (180)
Q Consensus 67 ~~~-~~----~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~ 122 (180)
+.+ +. ..+|+|+++..++ .++.. +.|.++.+.||| ||.+++.+...+...
T Consensus 241 ~~~lp~~d~~~~aDVVf~Nn~~F-~pdl~--~aL~Ei~RvLKP---GGrIVssE~f~p~d~ 295 (438)
T 3uwp_A 241 FLSEEWRERIANTSVIFVNNFAF-GPEVD--HQLKERFANMKE---GGRIVSSKPFAPLNF 295 (438)
T ss_dssp TTSHHHHHHHHTCSEEEECCTTC-CHHHH--HHHHHHHTTSCT---TCEEEESSCSSCTTC
T ss_pred ccCCccccccCCccEEEEccccc-CchHH--HHHHHHHHcCCC---CcEEEEeecccCCCC
Confidence 976 22 3699999987653 33444 678999999999 999999887766543
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-14 Score=106.74 Aligned_cols=100 Identities=17% Similarity=0.173 Sum_probs=78.9
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHH-CCCCeEEEeeCch-hhccCCC----C---CCeeEEecCCcccCC--C
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEA-FPGIKCTVLDLPH-AVTDMPQ----T---DNLKYIEGDMFQFIP--P 73 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~-~~~~~~~~~D~~~-~~~~a~~----~---~~~~~~~~d~~~~~~--~ 73 (180)
+++.+. +.++.+|||+|||+|.++..+++. .|..+++++|+++ +++.+++ . .++++.++|+.+..+ .
T Consensus 102 ~~~~~~--~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~ 179 (275)
T 1yb2_A 102 IIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQM 179 (275)
T ss_dssp ----CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCC
T ss_pred HHHHcC--CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCCC
Confidence 444455 677889999999999999999987 7788999999965 7776653 2 579999999976443 5
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 74 SDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 74 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
||+|++ +++++. .+++++.++|+| ||.+++...
T Consensus 180 fD~Vi~-----~~~~~~--~~l~~~~~~Lkp---gG~l~i~~~ 212 (275)
T 1yb2_A 180 YDAVIA-----DIPDPW--NHVQKIASMMKP---GSVATFYLP 212 (275)
T ss_dssp EEEEEE-----CCSCGG--GSHHHHHHTEEE---EEEEEEEES
T ss_pred ccEEEE-----cCcCHH--HHHHHHHHHcCC---CCEEEEEeC
Confidence 999998 456666 779999999999 888888763
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=8.1e-14 Score=99.27 Aligned_cols=130 Identities=8% Similarity=0.024 Sum_probs=99.0
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccCC---CccEEEecc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFIP---PSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~~---~~D~v~~~~ 81 (180)
.+++.+|+|||||+|.++..+++..|..+++++|+++ +++.|++ ..++++..+|.++..+ .||+|+..+
T Consensus 13 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG 92 (225)
T 3kr9_A 13 VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAG 92 (225)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcC
Confidence 4577899999999999999999998888999999965 8888874 3579999999987554 599998765
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCC
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGF 161 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 161 (180)
+- ......++....+.|++ +|.+++... ...+.+.+.+.+.||
T Consensus 93 ~G----g~~i~~Il~~~~~~L~~---~~~lVlq~~------------------------------~~~~~vr~~L~~~Gf 135 (225)
T 3kr9_A 93 MG----GRLIARILEEGLGKLAN---VERLILQPN------------------------------NREDDLRIWLQDHGF 135 (225)
T ss_dssp EC----HHHHHHHHHHTGGGCTT---CCEEEEEES------------------------------SCHHHHHHHHHHTTE
T ss_pred CC----hHHHHHHHHHHHHHhCC---CCEEEEECC------------------------------CCHHHHHHHHHHCCC
Confidence 52 33355889999999999 788777321 134677888999999
Q ss_pred eEEEEee---cCCceeEEEEe
Q 030291 162 THYKIAP---IFGIKSLIEVY 179 (180)
Q Consensus 162 ~~~~~~~---~~~~~~~~~~~ 179 (180)
.+++..- .+-++.++.+.
T Consensus 136 ~i~~e~lv~e~~~~Yeii~~~ 156 (225)
T 3kr9_A 136 QIVAESILEEAGKFYEILVVE 156 (225)
T ss_dssp EEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEEEECCEEEEEEEEE
Confidence 9887642 23345555543
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.6e-14 Score=99.31 Aligned_cols=103 Identities=17% Similarity=0.231 Sum_probs=79.1
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCch-hhccCCC-------CCCeeEEecCCccc---C-CCccEEEe
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQF---I-PPSDAFFF 79 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~---~-~~~D~v~~ 79 (180)
++++.+|||+|||+|.++..+++.. +..+++++|+++ +++.+++ ..++++.++|+.+. . ..||+|++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF 99 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence 5678899999999999999999885 567999999965 8888865 25899999998542 2 36999998
Q ss_pred cccccc-------CChHHHHHHHHHHHHhhccCCCCcEEEEEEeee
Q 030291 80 KTVFHF-------FDDEDCLKLLKKCREAIASNGERGKVLIIDIVI 118 (180)
Q Consensus 80 ~~~l~~-------~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~ 118 (180)
+..+.. .......++++++.++|+| ||.+++..+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~---gG~l~~~~~~~ 142 (197)
T 3eey_A 100 NLGYLPSGDHSISTRPETTIQALSKAMELLVT---GGIITVVIYYG 142 (197)
T ss_dssp EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEE---EEEEEEEECCB
T ss_pred cCCcccCcccccccCcccHHHHHHHHHHhCcC---CCEEEEEEccC
Confidence 765411 1122334789999999999 88888876543
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.4e-14 Score=108.95 Aligned_cols=106 Identities=17% Similarity=0.294 Sum_probs=83.3
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC---------CCCeeEEecCCcccCC--
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ---------TDNLKYIEGDMFQFIP-- 72 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~---------~~~~~~~~~d~~~~~~-- 72 (180)
+++.++ ...+.+|||+|||+|.++..+++.+|+.+++++|+++ +++.+++ ..++++..+|..+..+
T Consensus 214 ll~~l~--~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~ 291 (375)
T 4dcm_A 214 FMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF 291 (375)
T ss_dssp HHHTCC--CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTT
T ss_pred HHHhCc--ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCC
Confidence 344454 4455899999999999999999999999999999976 8888875 1258889999977544
Q ss_pred CccEEEecccccc---CChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 73 PSDAFFFKTVFHF---FDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 73 ~~D~v~~~~~l~~---~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
.||+|+++-.+|+ +.+....++++++.++|+| ||.++++.
T Consensus 292 ~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~iv~ 334 (375)
T 4dcm_A 292 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI---NGELYIVA 334 (375)
T ss_dssp CEEEEEECCCC-------CCHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred CeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCC---CcEEEEEE
Confidence 6999999988875 3334444789999999999 88888865
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.8e-14 Score=103.68 Aligned_cols=121 Identities=12% Similarity=0.059 Sum_probs=91.9
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcccC------CCccEEEec
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQFI------PPSDAFFFK 80 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~~------~~~D~v~~~ 80 (180)
.++.+|||||||+|..+..++..+|+.+++++|+++ +++.+++ ..+++++++|+.+.. ..||+|++.
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 567899999999999999999999999999999966 8887764 357999999985521 469999997
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcC
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAG 160 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 160 (180)
.+- +.. .+++.+.++|+| ||.+++.... ... -..+++...++..|
T Consensus 159 a~~----~~~--~ll~~~~~~Lkp---gG~l~~~~g~----~~~----------------------~e~~~~~~~l~~~G 203 (249)
T 3g89_A 159 AVA----PLC--VLSELLLPFLEV---GGAAVAMKGP----RVE----------------------EELAPLPPALERLG 203 (249)
T ss_dssp SSC----CHH--HHHHHHGGGEEE---EEEEEEEECS----CCH----------------------HHHTTHHHHHHHHT
T ss_pred CcC----CHH--HHHHHHHHHcCC---CeEEEEEeCC----CcH----------------------HHHHHHHHHHHHcC
Confidence 542 333 789999999999 8888774411 000 01245667788889
Q ss_pred CeEEEEeec
Q 030291 161 FTHYKIAPI 169 (180)
Q Consensus 161 f~~~~~~~~ 169 (180)
|++.++...
T Consensus 204 ~~~~~~~~~ 212 (249)
T 3g89_A 204 GRLGEVLAL 212 (249)
T ss_dssp EEEEEEEEE
T ss_pred CeEEEEEEe
Confidence 988777644
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.52 E-value=3.6e-14 Score=103.26 Aligned_cols=98 Identities=13% Similarity=0.188 Sum_probs=79.6
Q ss_pred cccccccccCCCeEEEeCCcccHHHHHHHHH-CCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccCC--Cc
Q 030291 6 VKDCRPIFQGLRSMVDVGGGTGAFARIISEA-FPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFIP--PS 74 (180)
Q Consensus 6 ~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~-~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~~--~~ 74 (180)
+..+. ..++.+|||+|||+|.++..+++. .|..+++++|+++ +++.+++ ..++++.++|+.+..+ .|
T Consensus 86 ~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 163 (255)
T 3mb5_A 86 VAYAG--ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEENV 163 (255)
T ss_dssp HHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCCSE
T ss_pred HHhhC--CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCCCc
Confidence 34444 677889999999999999999998 7889999999965 8888764 2459999999976543 59
Q ss_pred cEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 75 DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 75 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
|+|++ +.+++. .+++++.++|+| ||.+++..
T Consensus 164 D~v~~-----~~~~~~--~~l~~~~~~L~~---gG~l~~~~ 194 (255)
T 3mb5_A 164 DHVIL-----DLPQPE--RVVEHAAKALKP---GGFFVAYT 194 (255)
T ss_dssp EEEEE-----CSSCGG--GGHHHHHHHEEE---EEEEEEEE
T ss_pred CEEEE-----CCCCHH--HHHHHHHHHcCC---CCEEEEEE
Confidence 99998 345555 679999999999 88888764
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.51 E-value=6.8e-14 Score=103.26 Aligned_cols=138 Identities=12% Similarity=0.077 Sum_probs=90.0
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccC-CCCCCeeEE-ecCCcc----cCC--CccEEEecccccc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDM-PQTDNLKYI-EGDMFQ----FIP--PSDAFFFKTVFHF 85 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a-~~~~~~~~~-~~d~~~----~~~--~~D~v~~~~~l~~ 85 (180)
.+.+|||||||+|.++..+++.. ..+++++|++. |++.+ ++..++... ..++.. .++ .||+|++..++++
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~g-a~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~sf~s 163 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQNG-AKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLPSFASIDVSFIS 163 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTT-CSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCCSEEEECCSSSC
T ss_pred cccEEEecCCCccHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCCCEEEEEeeHhh
Confidence 46799999999999999988873 45899999966 88874 334454332 233311 122 4999999888775
Q ss_pred CChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEee-cCCcccCHHHHHHHHHHcCCeEE
Q 030291 86 FDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFN-VGGKERTEQEWGSLFVNAGFTHY 164 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~aGf~~~ 164 (180)
+ . .+|.++.++|+| ||.+++......+. . ....+...... ...+.+..+++.+.++++||++.
T Consensus 164 l---~--~vL~e~~rvLkp---GG~lv~lvkPqfe~-~-------~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~ 227 (291)
T 3hp7_A 164 L---N--LILPALAKILVD---GGQVVALVKPQFEA-G-------REQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVK 227 (291)
T ss_dssp G---G--GTHHHHHHHSCT---TCEEEEEECGGGTS-C-------GGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEE
T ss_pred H---H--HHHHHHHHHcCc---CCEEEEEECccccc-C-------hhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEE
Confidence 5 3 679999999999 99998863111110 0 00111101000 01133467889999999999987
Q ss_pred EEeec
Q 030291 165 KIAPI 169 (180)
Q Consensus 165 ~~~~~ 169 (180)
.+...
T Consensus 228 ~~~~s 232 (291)
T 3hp7_A 228 GLDFS 232 (291)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 76543
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=3.6e-14 Score=101.15 Aligned_cols=98 Identities=11% Similarity=0.102 Sum_probs=76.8
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCccc----C--CCccEEEecc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQF----I--PPSDAFFFKT 81 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~----~--~~~D~v~~~~ 81 (180)
...+|||||||+|.++..+++.+|+..++++|++. +++.+++ ..+++++++|+.+. . .++|.|++.+
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 56799999999999999999999999999999966 8887764 46899999998552 2 3699999875
Q ss_pred ccccCChHHH------HHHHHHHHHhhccCCCCcEEEEEE
Q 030291 82 VFHFFDDEDC------LKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 82 ~l~~~~~~~~------~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
...+...... ..+++++.++|+| ||.+++..
T Consensus 114 ~~p~~~~~~~~rr~~~~~~l~~~~r~Lkp---GG~l~i~t 150 (218)
T 3dxy_A 114 PDPWHKARHNKRRIVQVPFAELVKSKLQL---GGVFHMAT 150 (218)
T ss_dssp CCCCCSGGGGGGSSCSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred CCCccchhhhhhhhhhHHHHHHHHHHcCC---CcEEEEEe
Confidence 4433222211 2589999999999 88877764
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.51 E-value=2e-13 Score=97.43 Aligned_cols=130 Identities=7% Similarity=-0.032 Sum_probs=99.1
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccCC---CccEEEecc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFIP---PSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~~---~~D~v~~~~ 81 (180)
.+++.+|+|||||+|.++..+++..+..+++++|+++ +++.|++ ..++++.++|.++... .||+|+..+
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaG 98 (230)
T 3lec_A 19 VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICG 98 (230)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeC
Confidence 4677899999999999999999998778899999966 8888874 3579999999987443 599988765
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCC
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGF 161 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 161 (180)
+. ......+|....+.|++ +|.+++... ...+.+++.+.+.||
T Consensus 99 mG----g~lI~~IL~~~~~~l~~---~~~lIlqp~------------------------------~~~~~lr~~L~~~Gf 141 (230)
T 3lec_A 99 MG----GRLIADILNNDIDKLQH---VKTLVLQPN------------------------------NREDDLRKWLAANDF 141 (230)
T ss_dssp EC----HHHHHHHHHHTGGGGTT---CCEEEEEES------------------------------SCHHHHHHHHHHTTE
T ss_pred Cc----hHHHHHHHHHHHHHhCc---CCEEEEECC------------------------------CChHHHHHHHHHCCC
Confidence 53 34455889999999998 787777431 134778889999999
Q ss_pred eEEEEee---cCCceeEEEEe
Q 030291 162 THYKIAP---IFGIKSLIEVY 179 (180)
Q Consensus 162 ~~~~~~~---~~~~~~~~~~~ 179 (180)
.+++..- .+-++.++.+.
T Consensus 142 ~i~~E~lv~e~~~~Yeii~~~ 162 (230)
T 3lec_A 142 EIVAEDILTENDKRYEILVVK 162 (230)
T ss_dssp EEEEEEEEEC--CEEEEEEEE
T ss_pred EEEEEEEEEECCEEEEEEEEE
Confidence 9887653 23355555553
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-13 Score=100.88 Aligned_cols=123 Identities=11% Similarity=0.104 Sum_probs=89.5
Q ss_pred cc-CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCccc-----CCCccEEE
Q 030291 13 FQ-GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQF-----IPPSDAFF 78 (180)
Q Consensus 13 ~~-~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~-----~~~~D~v~ 78 (180)
.+ ++.+|||+|||+|.++..+++..+. +++++|+++ +++.+++ ..++++.++|+.+. ...||+|+
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii 124 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT 124 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence 45 6889999999999999999988654 899999965 8887764 34799999999662 23699999
Q ss_pred eccccccC------------------ChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEe
Q 030291 79 FKTVFHFF------------------DDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNF 140 (180)
Q Consensus 79 ~~~~l~~~------------------~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (180)
++-.+... .......+++.+.++|+| ||.+++...
T Consensus 125 ~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~------------------------ 177 (259)
T 3lpm_A 125 CNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQ---GGKANFVHR------------------------ 177 (259)
T ss_dssp ECCCC-----------------------HHHHHHHHHHHHHEEE---EEEEEEEEC------------------------
T ss_pred ECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccC---CcEEEEEEc------------------------
Confidence 97544322 112344789999999999 888887421
Q ss_pred ecCCcccCHHHHHHHHHHcCCeEEEEee
Q 030291 141 NVGGKERTEQEWGSLFVNAGFTHYKIAP 168 (180)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 168 (180)
.....++...+++.||....+..
T Consensus 178 -----~~~~~~~~~~l~~~~~~~~~~~~ 200 (259)
T 3lpm_A 178 -----PERLLDIIDIMRKYRLEPKRIQF 200 (259)
T ss_dssp -----TTTHHHHHHHHHHTTEEEEEEEE
T ss_pred -----HHHHHHHHHHHHHCCCceEEEEE
Confidence 11335666777778887766543
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.50 E-value=4.8e-14 Score=97.09 Aligned_cols=109 Identities=11% Similarity=0.064 Sum_probs=84.1
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC--CCCeeEEecCCcc-cC---C--CccEEEecccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ--TDNLKYIEGDMFQ-FI---P--PSDAFFFKTVF 83 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~--~~~~~~~~~d~~~-~~---~--~~D~v~~~~~l 83 (180)
++++.+|||||||. +.+|+++ |++.+++ ..++++.++|+.+ +. + .||+|+++.++
T Consensus 10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l 73 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP 73 (176)
T ss_dssp CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence 78899999999986 1288865 8888875 3468999999855 22 2 59999999999
Q ss_pred ccC-ChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCC
Q 030291 84 HFF-DDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGF 161 (180)
Q Consensus 84 ~~~-~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 161 (180)
||+ ++.. +++++++++||| ||.+++.+....... .....++.++|.+.++++||
T Consensus 74 ~~~~~~~~--~~l~~~~r~Lkp---gG~l~~~~~~~~~~~-------------------~~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 74 GSTTLHSA--EILAEIARILRP---GGCLFLKEPVETAVD-------------------NNSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp TCCCCCCH--HHHHHHHHHEEE---EEEEEEEEEEESSSC-------------------SSSSSCCHHHHHHHHHHTTC
T ss_pred hhcccCHH--HHHHHHHHHCCC---CEEEEEEcccccccc-------------------cccccCCHHHHHHHHHHCCC
Confidence 999 7776 789999999999 899888654322110 01123578999999999999
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.50 E-value=4.3e-15 Score=108.17 Aligned_cols=144 Identities=13% Similarity=0.104 Sum_probs=91.8
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcc----cC-----CCccEE
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQ----FI-----PPSDAF 77 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~----~~-----~~~D~v 77 (180)
++.+|||+|||+|.++..+++..++.+++++|+++ +++.+++ ..++++.++|+.+ .. ..||+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 56799999999999999998887778999999965 8888764 2459999998532 22 259999
Q ss_pred EeccccccCCh-------------HHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCC
Q 030291 78 FFKTVFHFFDD-------------EDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGG 144 (180)
Q Consensus 78 ~~~~~l~~~~~-------------~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (180)
+++-.+++... .....++.++.++|+| ||.+.+.+..... .......... .. ...+
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Lkp---gG~l~~~~~~~~~------~~~~l~~~g~-~~-~~~~ 213 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAE---GGELEFVKRIIHD------SLQLKKRLRW-YS-CMLG 213 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHH---HTHHHHHHHHHHH------HHHHGGGBSC-EE-EEES
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEec---CCEEEEEHHHHHH------HHhcccceEE-EE-ECCC
Confidence 99865544330 0112467888999999 8988776432111 0000001111 11 1112
Q ss_pred cccCHHHHHHHHHHcCCeEEEEeec
Q 030291 145 KERTEQEWGSLFVNAGFTHYKIAPI 169 (180)
Q Consensus 145 ~~~~~~~~~~~l~~aGf~~~~~~~~ 169 (180)
...+.+++.++++++||+.+++...
T Consensus 214 ~~~~~~~~~~~l~~~Gf~~v~~~~~ 238 (254)
T 2h00_A 214 KKCSLAPLKEELRIQGVPKVTYTEF 238 (254)
T ss_dssp STTSHHHHHHHHHHTTCSEEEEEEE
T ss_pred ChhHHHHHHHHHHHcCCCceEEEEE
Confidence 3345578999999999998876654
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.50 E-value=5.6e-14 Score=96.85 Aligned_cols=119 Identities=16% Similarity=0.214 Sum_probs=90.7
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcccCC--Ccc
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQFIP--PSD 75 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~~~--~~D 75 (180)
+++.+. ..++.+|||+|||+|.++..+++ +..+++++|+++ +++.+++ ..++++.++|+.+..+ .||
T Consensus 27 ~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D 102 (183)
T 2yxd_A 27 SIGKLN--LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEFN 102 (183)
T ss_dssp HHHHHC--CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCCS
T ss_pred HHHHcC--CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCCc
Confidence 334444 56778999999999999999988 588999999965 8887765 2579999999866433 699
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHH
Q 030291 76 AFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSL 155 (180)
Q Consensus 76 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (180)
+|++..+ .+.. .+++++.++ | ||.+++..... .+..++.+.
T Consensus 103 ~i~~~~~----~~~~--~~l~~~~~~--~---gG~l~~~~~~~----------------------------~~~~~~~~~ 143 (183)
T 2yxd_A 103 KAFIGGT----KNIE--KIIEILDKK--K---INHIVANTIVL----------------------------ENAAKIINE 143 (183)
T ss_dssp EEEECSC----SCHH--HHHHHHHHT--T---CCEEEEEESCH----------------------------HHHHHHHHH
T ss_pred EEEECCc----ccHH--HHHHHHhhC--C---CCEEEEEeccc----------------------------ccHHHHHHH
Confidence 9999887 3333 779999988 8 89988866321 123567788
Q ss_pred HHHcCCeEEEE
Q 030291 156 FVNAGFTHYKI 166 (180)
Q Consensus 156 l~~aGf~~~~~ 166 (180)
+++.||.+..+
T Consensus 144 l~~~g~~~~~~ 154 (183)
T 2yxd_A 144 FESRGYNVDAV 154 (183)
T ss_dssp HHHTTCEEEEE
T ss_pred HHHcCCeEEEE
Confidence 99999876544
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-13 Score=97.59 Aligned_cols=91 Identities=21% Similarity=0.329 Sum_probs=74.4
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcccC--CCccEEEecccccc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQFI--PPSDAFFFKTVFHF 85 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~~--~~~D~v~~~~~l~~ 85 (180)
++.+|||+|||+|..+..+++.+|+.+++++|+++ +++.+++ ..++++.++|+.+.. ..||+|+++..
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~--- 141 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF--- 141 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS---
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEecc---
Confidence 36799999999999999999998889999999965 8777764 245999999996633 36999998653
Q ss_pred CChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 86 FDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
.+.. .+++++.++|+| ||.+++.
T Consensus 142 -~~~~--~~l~~~~~~L~~---gG~l~~~ 164 (207)
T 1jsx_A 142 -ASLN--DMVSWCHHLPGE---QGRFYAL 164 (207)
T ss_dssp -SSHH--HHHHHHTTSEEE---EEEEEEE
T ss_pred -CCHH--HHHHHHHHhcCC---CcEEEEE
Confidence 3334 789999999999 7887775
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-14 Score=109.30 Aligned_cols=100 Identities=19% Similarity=0.248 Sum_probs=81.3
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCcccC-CCccEEEeccccccC
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQFI-PPSDAFFFKTVFHFF 86 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~~~-~~~D~v~~~~~l~~~ 86 (180)
..+.+|||+|||+|.++..+++..|..+++++|+++ +++.+++ ..+.++..+|..+.. +.||+|+++..+|+.
T Consensus 195 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Iv~~~~~~~g 274 (343)
T 2pjd_A 195 HTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFDMIISNPPFHDG 274 (343)
T ss_dssp TCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEEEEEECCCCCSS
T ss_pred CCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCeeEEEECCCcccC
Confidence 456799999999999999999998888999999976 8887764 234677888886533 469999999998863
Q ss_pred ---ChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 87 ---DDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 87 ---~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
......++++++.++|+| ||.+++...
T Consensus 275 ~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~ 304 (343)
T 2pjd_A 275 MQTSLDAAQTLIRGAVRHLNS---GGELRIVAN 304 (343)
T ss_dssp SHHHHHHHHHHHHHHGGGEEE---EEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhCCC---CcEEEEEEc
Confidence 233455899999999999 888888764
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.49 E-value=3.8e-14 Score=103.51 Aligned_cols=148 Identities=15% Similarity=0.194 Sum_probs=96.8
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcc-cC--CCccEEEeccccccC-Ch
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQ-FI--PPSDAFFFKTVFHFF-DD 88 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~-~~--~~~D~v~~~~~l~~~-~~ 88 (180)
+++.+|||||||+|.++..+++. +.+++++|+++ +++.+++...-.+.++|+.+ +. ..||+|++..+++|+ ++
T Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~ 130 (260)
T 2avn_A 53 KNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN 130 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC
T ss_pred CCCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc
Confidence 46789999999999999999887 66899999966 88887752111378888854 22 369999998866665 56
Q ss_pred HHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCc----hhhhhhhhcc--ceeeE----eecCCcccCHHHHHHHHHH
Q 030291 89 EDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDD----RELTESKLLF--DIFMN----FNVGGKERTEQEWGSLFVN 158 (180)
Q Consensus 89 ~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~----~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~l~~ 158 (180)
.. .+++++.++|+| ||.+++........... ..+....... ..... .......++.+++.++
T Consensus 131 ~~--~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--- 202 (260)
T 2avn_A 131 KD--KAFSEIRRVLVP---DGLLIATVDNFYTFLQQMIEKDAWDQITRFLKTQTTSVGTTLFSFNSYAFKPEDLDSL--- 202 (260)
T ss_dssp HH--HHHHHHHHHEEE---EEEEEEEEEBHHHHHHHHHHTTCHHHHHHHHHHCEEEEECSSEEEEEECBCGGGGSSC---
T ss_pred HH--HHHHHHHHHcCC---CeEEEEEeCChHHHHHHhhcchhHHHHHHHHhccccccCCCceeEEEeccCHHHHHHh---
Confidence 54 889999999999 88888877653211000 0000000000 00000 0001125688888777
Q ss_pred cCCeEEEEeecCC
Q 030291 159 AGFTHYKIAPIFG 171 (180)
Q Consensus 159 aGf~~~~~~~~~~ 171 (180)
+||+++++....+
T Consensus 203 aGf~~~~~~~~~~ 215 (260)
T 2avn_A 203 EGFETVDIRGIGV 215 (260)
T ss_dssp TTEEEEEEEEECS
T ss_pred cCceEEEEECCCC
Confidence 9999988876543
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=5.2e-13 Score=98.53 Aligned_cols=121 Identities=12% Similarity=0.093 Sum_probs=92.1
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccC--CCccEEEeccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFI--PPSDAFFFKTV 82 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~--~~~D~v~~~~~ 82 (180)
.+++.+|||+|||+|.++..+++..+. +++++|+++ +++.+++ ..++++.++|+.+.. ..||+|++...
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p 201 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred CCCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCc
Confidence 356889999999999999999998654 799999965 8888764 345899999997633 36999998544
Q ss_pred cccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCe
Q 030291 83 FHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFT 162 (180)
Q Consensus 83 l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 162 (180)
. ... .+++++.++|+| ||.+++.+....... .....+++.+.++++||+
T Consensus 202 ~----~~~--~~l~~~~~~Lkp---gG~l~~~~~~~~~~~----------------------~~~~~~~i~~~~~~~G~~ 250 (278)
T 2frn_A 202 V----RTH--EFIPKALSIAKD---GAIIHYHNTVPEKLM----------------------PREPFETFKRITKEYGYD 250 (278)
T ss_dssp S----SGG--GGHHHHHHHEEE---EEEEEEEEEEEGGGT----------------------TTTTHHHHHHHHHHTTCE
T ss_pred h----hHH--HHHHHHHHHCCC---CeEEEEEEeeccccc----------------------cccHHHHHHHHHHHcCCe
Confidence 2 223 679999999999 888888776432110 112457788999999998
Q ss_pred EEE
Q 030291 163 HYK 165 (180)
Q Consensus 163 ~~~ 165 (180)
...
T Consensus 251 ~~~ 253 (278)
T 2frn_A 251 VEK 253 (278)
T ss_dssp EEE
T ss_pred eEE
Confidence 766
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=5.6e-14 Score=97.52 Aligned_cols=118 Identities=19% Similarity=0.255 Sum_probs=90.6
Q ss_pred cccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccC---CCc
Q 030291 6 VKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFI---PPS 74 (180)
Q Consensus 6 ~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~---~~~ 74 (180)
++.+. ..++.+|||+|||+|.++..+++.. .+++++|+++ +++.+++ ..++++.++|+.+.. +.|
T Consensus 26 ~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 101 (192)
T 1l3i_A 26 MCLAE--PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDI 101 (192)
T ss_dssp HHHHC--CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCE
T ss_pred HHhcC--CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCCC
Confidence 34444 5678899999999999999998886 7899999965 7777764 268999999986522 469
Q ss_pred cEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHH
Q 030291 75 DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGS 154 (180)
Q Consensus 75 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (180)
|+|++...++++ ..+++++.++|+| ||.+++..... .+..++.+
T Consensus 102 D~v~~~~~~~~~-----~~~l~~~~~~l~~---gG~l~~~~~~~----------------------------~~~~~~~~ 145 (192)
T 1l3i_A 102 DIAVVGGSGGEL-----QEILRIIKDKLKP---GGRIIVTAILL----------------------------ETKFEAME 145 (192)
T ss_dssp EEEEESCCTTCH-----HHHHHHHHHTEEE---EEEEEEEECBH----------------------------HHHHHHHH
T ss_pred CEEEECCchHHH-----HHHHHHHHHhcCC---CcEEEEEecCc----------------------------chHHHHHH
Confidence 999998877543 3789999999999 88888765321 12356778
Q ss_pred HHHHcCCeE
Q 030291 155 LFVNAGFTH 163 (180)
Q Consensus 155 ~l~~aGf~~ 163 (180)
.+++.||.+
T Consensus 146 ~l~~~g~~~ 154 (192)
T 1l3i_A 146 CLRDLGFDV 154 (192)
T ss_dssp HHHHTTCCC
T ss_pred HHHHCCCce
Confidence 888999843
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.8e-13 Score=92.04 Aligned_cols=97 Identities=14% Similarity=0.224 Sum_probs=77.9
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHH-CCCCeEEEeeCchhhccCCCCCCeeEEecCCccc---------CC--CccEEEec
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEA-FPGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQF---------IP--PSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~-~~~~~~~~~D~~~~~~~a~~~~~~~~~~~d~~~~---------~~--~~D~v~~~ 80 (180)
.+++.+|||+|||+|.++..+++. .++.+++++|+++++. ..++++.++|+.+. .+ .||+|+++
T Consensus 20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~ 95 (180)
T 1ej0_A 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP----IVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSD 95 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCC----CTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccc----cCcEEEEEcccccchhhhhhhccCCCCceeEEEEC
Confidence 456789999999999999999988 4678999999966432 26799999999653 33 69999999
Q ss_pred cccccCChHH---------HHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 81 TVFHFFDDED---------CLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 81 ~~l~~~~~~~---------~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
..+++..+.. ...+++++.++|+| ||.+++...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~ 137 (180)
T 1ej0_A 96 MAPNMSGTPAVDIPRAMYLVELALEMCRDVLAP---GGSFVVKVF 137 (180)
T ss_dssp CCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred CCccccCCCccchHHHHHHHHHHHHHHHHHcCC---CcEEEEEEe
Confidence 9888776541 13789999999999 888887664
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.48 E-value=6.1e-14 Score=99.14 Aligned_cols=97 Identities=12% Similarity=0.109 Sum_probs=78.7
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcccC---CCc
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQFI---PPS 74 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~~---~~~ 74 (180)
+++.+. ..++.+|||||||+|.++..+++. ..+++++|+++ +++.+++ ..++++..+|..+.. ..|
T Consensus 69 ~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (210)
T 3lbf_A 69 MTELLE--LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPF 144 (210)
T ss_dssp HHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCE
T ss_pred HHHhcC--CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCc
Confidence 334444 577899999999999999999998 67899999965 8887764 357999999996632 369
Q ss_pred cEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 75 DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 75 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
|+|++..+++++++ .+.+.|+| ||.+++...
T Consensus 145 D~i~~~~~~~~~~~--------~~~~~L~p---gG~lv~~~~ 175 (210)
T 3lbf_A 145 DAIIVTAAPPEIPT--------ALMTQLDE---GGILVLPVG 175 (210)
T ss_dssp EEEEESSBCSSCCT--------HHHHTEEE---EEEEEEEEC
T ss_pred cEEEEccchhhhhH--------HHHHhccc---CcEEEEEEc
Confidence 99999999999886 47889999 888888654
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.48 E-value=6e-13 Score=93.33 Aligned_cols=96 Identities=16% Similarity=0.177 Sum_probs=74.3
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCC--CCeEEEeeCchhhccCCCCCCeeEEecCCcccC-------------------
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFP--GIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQFI------------------- 71 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~--~~~~~~~D~~~~~~~a~~~~~~~~~~~d~~~~~------------------- 71 (180)
++++.+|||+|||+|.++..+++.++ ..+++++|++++. ...++++.++|+.+..
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~ 95 (201)
T 2plw_A 20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----PIPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVD 95 (201)
T ss_dssp CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----CCTTCEEEECCTTTTSSCCC-----------CHHH
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----CCCCceEEEccccchhhhhhccccccccccchhhH
Confidence 46778999999999999999999987 6899999997742 2356888898885532
Q ss_pred -------C--CccEEEeccccccCC----hHH-----HHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 72 -------P--PSDAFFFKTVFHFFD----DED-----CLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 72 -------~--~~D~v~~~~~l~~~~----~~~-----~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
+ .||+|++...+++.. +.. ...+++++.++|+| ||.+++..
T Consensus 96 ~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~~ 154 (201)
T 2plw_A 96 YKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINI---GGTYIVKM 154 (201)
T ss_dssp HHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred HHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccC---CCEEEEEE
Confidence 2 699999988877642 221 12478999999999 88877744
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.48 E-value=6.6e-14 Score=101.84 Aligned_cols=99 Identities=12% Similarity=0.137 Sum_probs=79.9
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHH-CCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCccc-CC--
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEA-FPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQF-IP-- 72 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~-~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~-~~-- 72 (180)
+++.+. +.++.+|||+|||+|.++..+++. .|..+++++|+++ +++.+++ ..++++.++|+.+. .+
T Consensus 88 ~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~ 165 (258)
T 2pwy_A 88 MVTLLD--LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEA 165 (258)
T ss_dssp HHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTT
T ss_pred HHHHcC--CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCC
Confidence 344455 678889999999999999999988 6788999999965 7777764 26899999999664 43
Q ss_pred CccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 73 PSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 73 ~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
.||+|++ +.+++. .+++++.++|+| ||.+++..
T Consensus 166 ~~D~v~~-----~~~~~~--~~l~~~~~~L~~---gG~l~~~~ 198 (258)
T 2pwy_A 166 AYDGVAL-----DLMEPW--KVLEKAALALKP---DRFLVAYL 198 (258)
T ss_dssp CEEEEEE-----ESSCGG--GGHHHHHHHEEE---EEEEEEEE
T ss_pred CcCEEEE-----CCcCHH--HHHHHHHHhCCC---CCEEEEEe
Confidence 5999998 345555 779999999999 88888866
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-13 Score=101.07 Aligned_cols=97 Identities=12% Similarity=0.184 Sum_probs=72.4
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeC-ch-hhccCCCC----------------CCeeEEecCCcc---c--
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDL-PH-AVTDMPQT----------------DNLKYIEGDMFQ---F-- 70 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~-~~-~~~~a~~~----------------~~~~~~~~d~~~---~-- 70 (180)
.++.+|||||||+|.++..+++.. ..+++++|+ +. +++.+++. .++++...+..+ .
T Consensus 78 ~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 156 (281)
T 3bzb_A 78 IAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQ 156 (281)
T ss_dssp TTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHH
T ss_pred cCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHH
Confidence 467799999999999999888763 348999999 55 77665431 367777554322 1
Q ss_pred ----CCCccEEEeccccccCChHHHHHHHHHHHHhhc---cCCCCcEEEEE
Q 030291 71 ----IPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIA---SNGERGKVLII 114 (180)
Q Consensus 71 ----~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~---p~~~~G~~~~~ 114 (180)
...||+|++..+++|.++.. .+++.+.++|+ | ++||.+++.
T Consensus 157 ~~~~~~~fD~Ii~~dvl~~~~~~~--~ll~~l~~~Lk~~~p-~~gG~l~v~ 204 (281)
T 3bzb_A 157 RCTGLQRFQVVLLADLLSFHQAHD--ALLRSVKMLLALPAN-DPTAVALVT 204 (281)
T ss_dssp HHHSCSSBSEEEEESCCSCGGGHH--HHHHHHHHHBCCTTT-CTTCEEEEE
T ss_pred hhccCCCCCEEEEeCcccChHHHH--HHHHHHHHHhcccCC-CCCCEEEEE
Confidence 24699999999999877766 78999999999 6 225766663
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.6e-14 Score=102.19 Aligned_cols=99 Identities=10% Similarity=0.089 Sum_probs=75.4
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCcc---cC--CCccEEEe-cc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQ---FI--PPSDAFFF-KT 81 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~---~~--~~~D~v~~-~~ 81 (180)
.++.+|||||||+|.++..+++.. ..+++++|+++ +++.+++ ..++++.++|+.+ +. ..||+|++ .+
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSC-EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcC-CCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 567899999999999999986653 34899999976 8888764 3678999999854 23 35999999 55
Q ss_pred cc--ccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 82 VF--HFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 82 ~l--~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
.+ +.........++++++++||| ||.+++.+.
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~r~Lkp---gG~l~~~~~ 171 (236)
T 1zx0_A 138 PLSEETWHTHQFNFIKNHAFRLLKP---GGVLTYCNL 171 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEE---EEEEEECCH
T ss_pred ccchhhhhhhhHHHHHHHHHHhcCC---CeEEEEEec
Confidence 43 233333444779999999999 888887654
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=5.2e-14 Score=101.36 Aligned_cols=134 Identities=10% Similarity=0.015 Sum_probs=98.8
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCcccCC--CccEEEeccccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQFIP--PSDAFFFKTVFH 84 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~~~~--~~D~v~~~~~l~ 84 (180)
+.++.+|||||||+|.++..+....|..+|+++|+++ +++.++. ..+.++.+.|.....+ .||+++++-++|
T Consensus 130 i~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~ 209 (281)
T 3lcv_B 130 LPRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLP 209 (281)
T ss_dssp SCCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHH
T ss_pred cCCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHH
Confidence 3568899999999999999999998999999999966 8888874 4568889999976433 699999999999
Q ss_pred cCChHHHHHHHHHHHHhhccCCCCcEEEEEEe--eeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCe
Q 030291 85 FFDDEDCLKLLKKCREAIASNGERGKVLIIDI--VIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFT 162 (180)
Q Consensus 85 ~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 162 (180)
|++++.....+ ++.+.|++ +|.++-++. ...... .+ ...-.+.|++.+.+.|+.
T Consensus 210 ~Le~q~kg~g~-~ll~aL~~---~~vvVSfp~ksl~Grs~----------gm----------~~~Y~~~~e~~~~~~g~~ 265 (281)
T 3lcv_B 210 CLETQQRGSGW-EVIDIVNS---PNIVVTFPTKSLGQRSK----------GM----------FQNYSQSFESQARERSCR 265 (281)
T ss_dssp HHHHHSTTHHH-HHHHHSSC---SEEEEEEECC-----------------CH----------HHHHHHHHHHHHHHHTCC
T ss_pred HhhhhhhHHHH-HHHHHhCC---CCEEEeccchhhcCCCc----------ch----------hhHHHHHHHHHHHhcCCc
Confidence 99988766677 99999999 444444433 111000 00 112347788999999994
Q ss_pred EEEEeecCC
Q 030291 163 HYKIAPIFG 171 (180)
Q Consensus 163 ~~~~~~~~~ 171 (180)
++...++.
T Consensus 266 -~~~~~~~n 273 (281)
T 3lcv_B 266 -IQRLEIGN 273 (281)
T ss_dssp -EEEEEETT
T ss_pred -eeeeeecC
Confidence 44444433
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.47 E-value=5.4e-14 Score=109.10 Aligned_cols=108 Identities=15% Similarity=0.225 Sum_probs=81.3
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccC-------CC--------CCCeeEEecCCc
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDM-------PQ--------TDNLKYIEGDMF 68 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a-------~~--------~~~~~~~~~d~~ 68 (180)
+++.+. +.++.+|||||||+|.++..+++..+..+++++|+++ +++.| ++ ..++++.++|..
T Consensus 234 ml~~l~--l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~ 311 (433)
T 1u2z_A 234 VYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSF 311 (433)
T ss_dssp HHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCS
T ss_pred HHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcc
Confidence 444444 6778999999999999999999987666899999965 76666 32 268999887543
Q ss_pred c-------cCCCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCC
Q 030291 69 Q-------FIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDE 120 (180)
Q Consensus 69 ~-------~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~ 120 (180)
. ..+.||+|+++..+ +.++. ..+|+++.+.|+| ||.+++.+...+.
T Consensus 312 ~~~~~~~~~~~~FDvIvvn~~l-~~~d~--~~~L~el~r~LKp---GG~lVi~d~f~p~ 364 (433)
T 1u2z_A 312 VDNNRVAELIPQCDVILVNNFL-FDEDL--NKKVEKILQTAKV---GCKIISLKSLRSL 364 (433)
T ss_dssp TTCHHHHHHGGGCSEEEECCTT-CCHHH--HHHHHHHHTTCCT---TCEEEESSCSSCT
T ss_pred ccccccccccCCCCEEEEeCcc-ccccH--HHHHHHHHHhCCC---CeEEEEeeccCCc
Confidence 2 13469999987666 23333 4779999999999 9999998655443
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.46 E-value=5.9e-13 Score=95.76 Aligned_cols=129 Identities=8% Similarity=0.049 Sum_probs=97.2
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccCC---CccEEEecc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFIP---PSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~~---~~D~v~~~~ 81 (180)
.+++.+|||||||+|.++..+++..|..+++++|+++ +++.|++ ..++++.++|.++... .||+|++.+
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviag 98 (244)
T 3gnl_A 19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAG 98 (244)
T ss_dssp CCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeC
Confidence 4677899999999999999999998777899999966 8888875 3579999999987543 499988755
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCC
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGF 161 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 161 (180)
+- ......+|....+.|++ ++.+++... ...+.+++.+.+.||
T Consensus 99 mG----g~lI~~IL~~~~~~L~~---~~~lIlq~~------------------------------~~~~~lr~~L~~~Gf 141 (244)
T 3gnl_A 99 MG----GTLIRTILEEGAAKLAG---VTKLILQPN------------------------------IAAWQLREWSEQNNW 141 (244)
T ss_dssp EC----HHHHHHHHHHTGGGGTT---CCEEEEEES------------------------------SCHHHHHHHHHHHTE
T ss_pred Cc----hHHHHHHHHHHHHHhCC---CCEEEEEcC------------------------------CChHHHHHHHHHCCC
Confidence 43 34455889999999998 777777431 134678888999999
Q ss_pred eEEEEe---ecCCceeEEEE
Q 030291 162 THYKIA---PIFGIKSLIEV 178 (180)
Q Consensus 162 ~~~~~~---~~~~~~~~~~~ 178 (180)
.+++.. ...-++.++.+
T Consensus 142 ~i~~E~lv~e~~k~Yeii~~ 161 (244)
T 3gnl_A 142 LITSEAILREDNKVYEIMVL 161 (244)
T ss_dssp EEEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEEEEECCEEEEEEEE
Confidence 986544 22334444444
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.4e-13 Score=94.66 Aligned_cols=99 Identities=9% Similarity=0.077 Sum_probs=78.2
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCccc-----CCCccEEEecc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQF-----IPPSDAFFFKT 81 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~-----~~~~D~v~~~~ 81 (180)
.++.+|||+|||+|.++..+++. +..+++++|+++ +++.+++ ..++++.++|+.+. ...||+|+++.
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECC
Confidence 46789999999999999987775 355899999965 8888875 25899999998652 34699999988
Q ss_pred ccccCChHHHHHHHHHHHH--hhccCCCCcEEEEEEee
Q 030291 82 VFHFFDDEDCLKLLKKCRE--AIASNGERGKVLIIDIV 117 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~--~L~p~~~~G~~~~~~~~ 117 (180)
.+++. .....++++.+.+ +|+| ||.+++....
T Consensus 122 p~~~~-~~~~~~~l~~~~~~~~L~p---gG~l~~~~~~ 155 (189)
T 3p9n_A 122 PYNVD-SADVDAILAALGTNGWTRE---GTVAVVERAT 155 (189)
T ss_dssp CTTSC-HHHHHHHHHHHHHSSSCCT---TCEEEEEEET
T ss_pred CCCcc-hhhHHHHHHHHHhcCccCC---CeEEEEEecC
Confidence 86654 2334478999999 9999 8888886543
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1e-13 Score=105.46 Aligned_cols=104 Identities=14% Similarity=0.195 Sum_probs=82.3
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCC-------CCCeeEEecCCcc-cC-CCcc
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ-------TDNLKYIEGDMFQ-FI-PPSD 75 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~-------~~~~~~~~~d~~~-~~-~~~D 75 (180)
+++.+. ..++.+|||||||+|.++..+++. +..+++++|+++++..+++ ..+++++.+|+.+ +. ..||
T Consensus 42 i~~~l~--~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~D 118 (348)
T 2y1w_A 42 ILQNHT--DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVD 118 (348)
T ss_dssp HHHTGG--GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEE
T ss_pred HHhccc--cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCcee
Confidence 334444 457789999999999999988886 3568999999776666653 2689999999965 33 3699
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 76 AFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 76 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
+|++..+++|+..+.....+.+++++|+| ||.+++.
T Consensus 119 ~Ivs~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~ 154 (348)
T 2y1w_A 119 IIISEPMGYMLFNERMLESYLHAKKYLKP---SGNMFPT 154 (348)
T ss_dssp EEEECCCBTTBTTTSHHHHHHHGGGGEEE---EEEEESC
T ss_pred EEEEeCchhcCChHHHHHHHHHHHhhcCC---CeEEEEe
Confidence 99999998888776666788899999999 7877754
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=4.5e-14 Score=113.75 Aligned_cols=103 Identities=15% Similarity=0.206 Sum_probs=83.2
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcc---c--CCCccEEEec
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ---F--IPPSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~---~--~~~~D~v~~~ 80 (180)
+..+.+|||||||+|.++..|++. +++|+|+|.++ +++.|+. ..+++|.++++.+ . ...||+|++.
T Consensus 64 ~~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~ 141 (569)
T 4azs_A 64 LGRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGL 141 (569)
T ss_dssp HTSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEE
T ss_pred cCCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEEC
Confidence 345679999999999999999998 78899999976 8887763 2478999999854 2 2369999999
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCC
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDE 120 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~ 120 (180)
.++||++++.....+.++.+.|++ +|..++......+
T Consensus 142 e~~ehv~~~~~~~~~~~~~~tl~~---~~~~~~~~~~~~e 178 (569)
T 4azs_A 142 SVFHHIVHLHGIDEVKRLLSRLAD---VTQAVILELAVKE 178 (569)
T ss_dssp SCHHHHHHHHCHHHHHHHHHHHHH---HSSEEEEECCCTT
T ss_pred cchhcCCCHHHHHHHHHHHHHhcc---ccceeeEEecccc
Confidence 999999988755556778888999 7888887765433
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-13 Score=98.15 Aligned_cols=99 Identities=15% Similarity=0.130 Sum_probs=79.2
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCch-hhccCCC------CCCeeEEecCCcccC---CC
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQFI---PP 73 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~~---~~ 73 (180)
+++.+. ..++.+|||||||+|.++..+++.. +..+++++|+++ +++.+++ ..++++.++|..... ..
T Consensus 69 ~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 146 (215)
T 2yxe_A 69 MCELLD--LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAP 146 (215)
T ss_dssp HHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCC
T ss_pred HHHhhC--CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCC
Confidence 344444 5678899999999999999999886 558999999965 8877764 357999999985533 36
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 74 SDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 74 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
||+|++..+++++++ ++.++|+| ||.+++...
T Consensus 147 fD~v~~~~~~~~~~~--------~~~~~L~p---gG~lv~~~~ 178 (215)
T 2yxe_A 147 YDRIYTTAAGPKIPE--------PLIRQLKD---GGKLLMPVG 178 (215)
T ss_dssp EEEEEESSBBSSCCH--------HHHHTEEE---EEEEEEEES
T ss_pred eeEEEECCchHHHHH--------HHHHHcCC---CcEEEEEEC
Confidence 999999999998873 67899999 888887653
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.9e-13 Score=100.75 Aligned_cols=93 Identities=18% Similarity=0.255 Sum_probs=76.4
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHH-CCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccCC--CccEEEecc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEA-FPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFIP--PSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~-~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~~--~~D~v~~~~ 81 (180)
+.++.+|||+|||+|.++..+++. .|..+++++|.++ +++.+++ ..++++.++|+.+..+ .||+|++.
T Consensus 110 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~V~~~- 188 (277)
T 1o54_A 110 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFLD- 188 (277)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEEEEEEC-
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCCccCEEEEC-
Confidence 567889999999999999999998 6788999999965 7777764 1579999999966443 59999983
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
.+++. .+++++.++|+| ||.+++..
T Consensus 189 ----~~~~~--~~l~~~~~~L~p---gG~l~~~~ 213 (277)
T 1o54_A 189 ----VPDPW--NYIDKCWEALKG---GGRFATVC 213 (277)
T ss_dssp ----CSCGG--GTHHHHHHHEEE---EEEEEEEE
T ss_pred ----CcCHH--HHHHHHHHHcCC---CCEEEEEe
Confidence 35555 779999999999 88888865
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=8e-13 Score=95.28 Aligned_cols=95 Identities=13% Similarity=0.165 Sum_probs=76.0
Q ss_pred cCCCeEEEeCCcccHHHHHHHHH----CCCCeEEEeeCch-hhccCCC-CCCeeEEecCCccc--C----C-CccEEEec
Q 030291 14 QGLRSMVDVGGGTGAFARIISEA----FPGIKCTVLDLPH-AVTDMPQ-TDNLKYIEGDMFQF--I----P-PSDAFFFK 80 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~----~~~~~~~~~D~~~-~~~~a~~-~~~~~~~~~d~~~~--~----~-~~D~v~~~ 80 (180)
.++.+|||||||+|..+..+++. .++.+++++|+++ +++.++. ..+++++++|..+. . . .||+|++.
T Consensus 80 ~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d 159 (236)
T 2bm8_A 80 LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFID 159 (236)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEE
T ss_pred cCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEEC
Confidence 35689999999999999999887 6788999999965 8888765 46899999999652 1 2 59999986
Q ss_pred cccccCChHHHHHHHHHHHH-hhccCCCCcEEEEEEe
Q 030291 81 TVFHFFDDEDCLKLLKKCRE-AIASNGERGKVLIIDI 116 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~-~L~p~~~~G~~~~~~~ 116 (180)
.. |. +. ..++.++.+ +|+| ||.+++.+.
T Consensus 160 ~~--~~-~~--~~~l~~~~r~~Lkp---GG~lv~~d~ 188 (236)
T 2bm8_A 160 NA--HA-NT--FNIMKWAVDHLLEE---GDYFIIEDM 188 (236)
T ss_dssp SS--CS-SH--HHHHHHHHHHTCCT---TCEEEECSC
T ss_pred Cc--hH-hH--HHHHHHHHHhhCCC---CCEEEEEeC
Confidence 65 32 33 378999997 9999 898888654
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.45 E-value=9.5e-14 Score=100.85 Aligned_cols=99 Identities=13% Similarity=0.126 Sum_probs=78.4
Q ss_pred CCCeEEEeCCcccHHHHHHHHH--CCCCeEEEeeCch-hhccCCC---CC-------C----------------------
Q 030291 15 GLRSMVDVGGGTGAFARIISEA--FPGIKCTVLDLPH-AVTDMPQ---TD-------N---------------------- 59 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~--~~~~~~~~~D~~~-~~~~a~~---~~-------~---------------------- 59 (180)
.+.+|||+|||+|.++..+++. .+..+++++|+++ +++.+++ .. +
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 5679999999999999999988 6677899999966 8888774 22 2
Q ss_pred ---ee-------------EEecCCcccC-------C-CccEEEeccccccCCh-------HHHHHHHHHHHHhhccCCCC
Q 030291 60 ---LK-------------YIEGDMFQFI-------P-PSDAFFFKTVFHFFDD-------EDCLKLLKKCREAIASNGER 108 (180)
Q Consensus 60 ---~~-------------~~~~d~~~~~-------~-~~D~v~~~~~l~~~~~-------~~~~~~l~~~~~~L~p~~~~ 108 (180)
++ +.++|+.+.. + .||+|+++-.+.+..+ .....+++++.++|+| |
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---g 207 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPA---H 207 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCT---T
T ss_pred hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCC---C
Confidence 66 9999997643 3 6999999876655443 4456889999999999 9
Q ss_pred cEEEEEEe
Q 030291 109 GKVLIIDI 116 (180)
Q Consensus 109 G~~~~~~~ 116 (180)
|.++++..
T Consensus 208 G~l~~~~~ 215 (250)
T 1o9g_A 208 AVIAVTDR 215 (250)
T ss_dssp CEEEEEES
T ss_pred cEEEEeCc
Confidence 99998543
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.6e-13 Score=97.01 Aligned_cols=99 Identities=18% Similarity=0.237 Sum_probs=73.2
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCC------------CCCCeeEEecCCccc----C--CCc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMP------------QTDNLKYIEGDMFQF----I--PPS 74 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~------------~~~~~~~~~~d~~~~----~--~~~ 74 (180)
++..+|||||||+|.++..+++.+|+..++++|++. +++.++ ...+++++++|+.+. + ..+
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 456789999999999999999999999999999976 776553 246899999998651 2 369
Q ss_pred cEEEeccccccCChH--H----HHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 75 DAFFFKTVFHFFDDE--D----CLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 75 D~v~~~~~l~~~~~~--~----~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
|.|++.+.-.+.... . ...+++++.++|+| ||.+++..
T Consensus 125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~Lkp---GG~l~~~t 168 (235)
T 3ckk_A 125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRV---GGLVYTIT 168 (235)
T ss_dssp EEEEEESCC-----------CCCHHHHHHHHHHEEE---EEEEEEEE
T ss_pred eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCC---CCEEEEEe
Confidence 999875432221110 0 13689999999999 88887764
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.44 E-value=2e-13 Score=98.10 Aligned_cols=138 Identities=12% Similarity=0.078 Sum_probs=83.0
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-CCCeeEEe-cCCc----ccCC--CccEEEecccccc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-TDNLKYIE-GDMF----QFIP--PSDAFFFKTVFHF 85 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-~~~~~~~~-~d~~----~~~~--~~D~v~~~~~l~~ 85 (180)
.+.+|||||||+|.++..+++.. ..+++++|+++ |++.+++ ..++.... .++. +..+ .+|.+.+..++.+
T Consensus 37 ~g~~VLDiGcGtG~~t~~la~~g-~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~~ 115 (232)
T 3opn_A 37 NGKTCLDIGSSTGGFTDVMLQNG-AKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVSFIS 115 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTT-CSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECCSSSC
T ss_pred CCCEEEEEccCCCHHHHHHHhcC-CCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCCCEEEEEEEhhh
Confidence 45699999999999999999883 24899999966 8887654 23322211 1110 1111 2455544444443
Q ss_pred CChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEe-ecCCcccCHHHHHHHHHHcCCeEE
Q 030291 86 FDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNF-NVGGKERTEQEWGSLFVNAGFTHY 164 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~aGf~~~ 164 (180)
+ . .++++++++|+| ||.+++.. .+. +...+......... ....+..+.+++.++++++||++.
T Consensus 116 l---~--~~l~~i~rvLkp---gG~lv~~~--~p~------~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~ 179 (232)
T 3opn_A 116 L---D--LILPPLYEILEK---NGEVAALI--KPQ------FEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVK 179 (232)
T ss_dssp G---G--GTHHHHHHHSCT---TCEEEEEE--CHH------HHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEE
T ss_pred H---H--HHHHHHHHhccC---CCEEEEEE--Ccc------cccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEE
Confidence 3 2 779999999999 89888853 110 00000011000000 001123477899999999999988
Q ss_pred EEeec
Q 030291 165 KIAPI 169 (180)
Q Consensus 165 ~~~~~ 169 (180)
.+...
T Consensus 180 ~~~~~ 184 (232)
T 3opn_A 180 GLTFS 184 (232)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 77643
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.44 E-value=2.3e-13 Score=97.55 Aligned_cols=97 Identities=16% Similarity=0.201 Sum_probs=77.9
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----CCCeeEEecCCcccC---CCccE
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----TDNLKYIEGDMFQFI---PPSDA 76 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----~~~~~~~~~d~~~~~---~~~D~ 76 (180)
+++.+. ..++.+|||||||+|.++..+++.. .+++++|+++ +++.+++ ..++++.++|..+.. ..||+
T Consensus 62 ~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 137 (231)
T 1vbf_A 62 MLDELD--LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDR 137 (231)
T ss_dssp HHHHTT--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEE
T ss_pred HHHhcC--CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCccE
Confidence 344444 5678899999999999999999985 7899999965 8877764 238999999986522 36999
Q ss_pred EEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 77 FFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 77 v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
|++..+++|+.+ ++.++|+| ||.+++...
T Consensus 138 v~~~~~~~~~~~--------~~~~~L~p---gG~l~~~~~ 166 (231)
T 1vbf_A 138 VVVWATAPTLLC--------KPYEQLKE---GGIMILPIG 166 (231)
T ss_dssp EEESSBBSSCCH--------HHHHTEEE---EEEEEEEEC
T ss_pred EEECCcHHHHHH--------HHHHHcCC---CcEEEEEEc
Confidence 999999998874 47889999 888888754
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.6e-13 Score=99.17 Aligned_cols=100 Identities=11% Similarity=0.162 Sum_probs=75.8
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC---C-------CCeeEEecCCccc----------C
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ---T-------DNLKYIEGDMFQF----------I 71 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~---~-------~~~~~~~~d~~~~----------~ 71 (180)
..++.+|||+|||+|.++..+++..|..+++++|+++ +++.+++ . .+++++++|+.+. .
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 4567899999999999999999999888999999965 7777654 1 2589999999654 2
Q ss_pred CCccEEEecccccc----------------CChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 72 PPSDAFFFKTVFHF----------------FDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 72 ~~~D~v~~~~~l~~----------------~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
..||+|+++-.+.. ........+++.+.++|+| ||.+++..
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~ 170 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVS---GGQLSLIS 170 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCC---CCEEEEEE
Confidence 35999999733221 1112245889999999999 88888753
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=4.2e-13 Score=102.51 Aligned_cols=95 Identities=18% Similarity=0.177 Sum_probs=73.7
Q ss_pred cCCCeEEEeCCc------ccHHHHHHHH-HCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcc--c-------CCCccE
Q 030291 14 QGLRSMVDVGGG------TGAFARIISE-AFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQ--F-------IPPSDA 76 (180)
Q Consensus 14 ~~~~~iLdiG~G------~G~~~~~l~~-~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~--~-------~~~~D~ 76 (180)
.++.+||||||| +|..+..+++ .+|+.+++++|+++ |. ....+++++++|+.+ . ..+||+
T Consensus 215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDl 291 (419)
T 3sso_A 215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---VDELRIRTIQGDQNDAEFLDRIARRYGPFDI 291 (419)
T ss_dssp TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---GCBTTEEEEECCTTCHHHHHHHHHHHCCEEE
T ss_pred CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---hcCCCcEEEEecccccchhhhhhcccCCccE
Confidence 467899999999 6555655555 46899999999966 63 245789999999965 1 257999
Q ss_pred EEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 77 FFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 77 v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
|++... |++.+.. .+|+++.++||| ||.+++.+..
T Consensus 292 Visdgs-H~~~d~~--~aL~el~rvLKP---GGvlVi~Dl~ 326 (419)
T 3sso_A 292 VIDDGS-HINAHVR--TSFAALFPHVRP---GGLYVIEDMW 326 (419)
T ss_dssp EEECSC-CCHHHHH--HHHHHHGGGEEE---EEEEEEECGG
T ss_pred EEECCc-ccchhHH--HHHHHHHHhcCC---CeEEEEEecc
Confidence 998754 6655554 789999999999 8888887765
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.6e-13 Score=103.24 Aligned_cols=95 Identities=15% Similarity=0.156 Sum_probs=75.2
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCC-------CCCeeEEecCCcc-cC--CCccEEEeccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ-------TDNLKYIEGDMFQ-FI--PPSDAFFFKTV 82 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~-------~~~~~~~~~d~~~-~~--~~~D~v~~~~~ 82 (180)
+.++.+|||||||+|.++..+++. +..+++++|++++++.+++ ..+++++++|+.+ +. ..||+|++..+
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~ 142 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWM 142 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCC
T ss_pred cCCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccc
Confidence 456789999999999999999888 3558999999877777764 3459999999966 33 36999999776
Q ss_pred cccC---ChHHHHHHHHHHHHhhccCCCCcEEEE
Q 030291 83 FHFF---DDEDCLKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 83 l~~~---~~~~~~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
.+++ .+.. .++..+.++|+| ||.++.
T Consensus 143 ~~~l~~~~~~~--~~l~~~~r~Lkp---gG~li~ 171 (349)
T 3q7e_A 143 GYCLFYESMLN--TVLHARDKWLAP---DGLIFP 171 (349)
T ss_dssp BBTBTBTCCHH--HHHHHHHHHEEE---EEEEES
T ss_pred cccccCchhHH--HHHHHHHHhCCC---CCEEcc
Confidence 4444 4444 789999999999 777764
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=2.2e-13 Score=102.35 Aligned_cols=98 Identities=15% Similarity=0.233 Sum_probs=78.9
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCC-CCeEEEeeCch-hhccCCC------CCCeeEEecCCccc---CCC
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFP-GIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQF---IPP 73 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~---~~~ 73 (180)
+++.+. .+++.+|||||||+|.++..+++..+ ..+++++|+++ +++.+++ ..++++.++|+.+. .+.
T Consensus 67 l~~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~ 144 (317)
T 1dl5_A 67 FMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSP 144 (317)
T ss_dssp HHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred HHHhcC--CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCC
Confidence 344444 67789999999999999999998865 47899999965 8877764 35699999999652 246
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 74 SDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 74 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
||+|++..++++++ +.+.+.|+| ||.+++..
T Consensus 145 fD~Iv~~~~~~~~~--------~~~~~~Lkp---gG~lvi~~ 175 (317)
T 1dl5_A 145 YDVIFVTVGVDEVP--------ETWFTQLKE---GGRVIVPI 175 (317)
T ss_dssp EEEEEECSBBSCCC--------HHHHHHEEE---EEEEEEEB
T ss_pred eEEEEEcCCHHHHH--------HHHHHhcCC---CcEEEEEE
Confidence 99999999999887 357789999 88888864
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.9e-13 Score=99.19 Aligned_cols=98 Identities=12% Similarity=0.142 Sum_probs=77.6
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCC-CCeEEEeeCch-hhccCCC-------CCCeeEEecCCccc------CCCccEE
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFP-GIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQF------IPPSDAF 77 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~------~~~~D~v 77 (180)
..++.+|||||||+|..+..+++..| +.+++++|+++ +++.+++ ..++++.++|+.+. ...||+|
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 45688999999999999999999987 78999999965 8887764 35899999998552 1269999
Q ss_pred EeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeee
Q 030291 78 FFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVI 118 (180)
Q Consensus 78 ~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~ 118 (180)
++... ......+++++.++|+| ||.+++.+...
T Consensus 141 ~~d~~-----~~~~~~~l~~~~~~Lkp---GG~lv~~~~~~ 173 (248)
T 3tfw_A 141 FIDAD-----KPNNPHYLRWALRYSRP---GTLIIGDNVVR 173 (248)
T ss_dssp EECSC-----GGGHHHHHHHHHHTCCT---TCEEEEECCSG
T ss_pred EECCc-----hHHHHHHHHHHHHhcCC---CeEEEEeCCCc
Confidence 98653 22234789999999999 88877765543
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.7e-13 Score=108.12 Aligned_cols=103 Identities=16% Similarity=0.225 Sum_probs=81.8
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCC-------CCCeeEEecCCcc-cCC-Ccc
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ-------TDNLKYIEGDMFQ-FIP-PSD 75 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~-------~~~~~~~~~d~~~-~~~-~~D 75 (180)
+++.+. ..++.+|||||||+|.++..+++. +..+++++|++++++.+++ ..+++++++|+.+ +.+ .||
T Consensus 150 il~~l~--~~~~~~VLDiGcGtG~la~~la~~-~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~fD 226 (480)
T 3b3j_A 150 ILQNHT--DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVD 226 (480)
T ss_dssp HHHTGG--GTTTCEEEEESCSTTHHHHHHHHT-TCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEE
T ss_pred HHHhhh--hcCCCEEEEecCcccHHHHHHHHc-CCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCCCeE
Confidence 344444 456789999999999999988874 5679999999767666653 3689999999976 333 699
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEE
Q 030291 76 AFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 76 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
+|+++.+++++.++.....+.+++++|+| ||.+++
T Consensus 227 ~Ivs~~~~~~~~~e~~~~~l~~~~~~Lkp---gG~li~ 261 (480)
T 3b3j_A 227 IIISEPMGYMLFNERMLESYLHAKKYLKP---SGNMFP 261 (480)
T ss_dssp EEECCCCHHHHTCHHHHHHHHHGGGGEEE---EEEEES
T ss_pred EEEEeCchHhcCcHHHHHHHHHHHHhcCC---CCEEEE
Confidence 99999888888777666788899999999 777775
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=5.1e-13 Score=101.23 Aligned_cols=94 Identities=21% Similarity=0.275 Sum_probs=74.4
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCC-------CCCeeEEecCCcc-cCC--CccEEEeccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ-------TDNLKYIEGDMFQ-FIP--PSDAFFFKTV 82 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~-------~~~~~~~~~d~~~-~~~--~~D~v~~~~~ 82 (180)
..++.+|||||||+|.++..+++.. ..+++++|++++++.+++ ..++++.++|+.+ +.+ .||+|++..+
T Consensus 62 ~~~~~~VLDiGcGtG~ls~~la~~g-~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~ 140 (340)
T 2fyt_A 62 IFKDKVVLDVGCGTGILSMFAAKAG-AKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM 140 (340)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred hcCCCEEEEeeccCcHHHHHHHHcC-CCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCc
Confidence 5677899999999999999988873 458999999777777664 2689999999965 333 6999998774
Q ss_pred ---cccCChHHHHHHHHHHHHhhccCCCCcEEE
Q 030291 83 ---FHFFDDEDCLKLLKKCREAIASNGERGKVL 112 (180)
Q Consensus 83 ---l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~ 112 (180)
+.+..+.. .++.++.++|+| ||.++
T Consensus 141 ~~~l~~~~~~~--~~l~~~~~~Lkp---gG~li 168 (340)
T 2fyt_A 141 GYFLLFESMLD--SVLYAKNKYLAK---GGSVY 168 (340)
T ss_dssp BTTBTTTCHHH--HHHHHHHHHEEE---EEEEE
T ss_pred hhhccCHHHHH--HHHHHHHhhcCC---CcEEE
Confidence 44444444 789999999999 77776
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-13 Score=98.69 Aligned_cols=98 Identities=15% Similarity=0.255 Sum_probs=77.8
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcc---cC------CCcc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQ---FI------PPSD 75 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~---~~------~~~D 75 (180)
.++.+|||||||+|..+..+++.. ++.+++++|+++ +++.+++ ..+++++++|..+ .. ..||
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD 136 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 136 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCS
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceE
Confidence 467899999999999999999875 478999999965 8888775 2469999999744 22 3699
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 76 AFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 76 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
+|++....++..+.. .++..+ ++|+| ||.+++.+..
T Consensus 137 ~V~~d~~~~~~~~~~--~~~~~~-~~Lkp---gG~lv~~~~~ 172 (221)
T 3u81_A 137 MVFLDHWKDRYLPDT--LLLEKC-GLLRK---GTVLLADNVI 172 (221)
T ss_dssp EEEECSCGGGHHHHH--HHHHHT-TCCCT---TCEEEESCCC
T ss_pred EEEEcCCcccchHHH--HHHHhc-cccCC---CeEEEEeCCC
Confidence 999988777665444 567777 99999 8888776554
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.9e-13 Score=103.16 Aligned_cols=100 Identities=14% Similarity=0.115 Sum_probs=78.2
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCC-------CCCeeEEecCCcc-cC-CCccEEEecccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ-------TDNLKYIEGDMFQ-FI-PPSDAFFFKTVF 83 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~-------~~~~~~~~~d~~~-~~-~~~D~v~~~~~l 83 (180)
..++.+|||||||+|.++..+++.. ..+++++|++++++.+++ ..+++++++|+.+ .. ..||+|++..+.
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~ 139 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMG 139 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCB
T ss_pred cCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChh
Confidence 5677899999999999999999883 348999999877777764 3569999999965 23 469999997766
Q ss_pred ccCCh-HHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 84 HFFDD-EDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 84 ~~~~~-~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
+++.. .....++..+.++|+| ||.+++...
T Consensus 140 ~~l~~e~~~~~~l~~~~~~Lkp---gG~li~~~~ 170 (376)
T 3r0q_C 140 YFLLRESMFDSVISARDRWLKP---TGVMYPSHA 170 (376)
T ss_dssp TTBTTTCTHHHHHHHHHHHEEE---EEEEESSEE
T ss_pred hcccchHHHHHHHHHHHhhCCC---CeEEEEecC
Confidence 66543 2244789999999999 787776443
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.41 E-value=5.3e-13 Score=96.54 Aligned_cols=98 Identities=16% Similarity=0.197 Sum_probs=77.7
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCC-CCeEEEeeCch-hhccCCC-------CCCeeEEecCCcc---c------CCCc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFP-GIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQ---F------IPPS 74 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~---~------~~~~ 74 (180)
..++.+|||||||+|..+..+++..+ +.+++++|+++ +++.+++ ..++++.++|..+ . ...|
T Consensus 58 ~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~f 137 (242)
T 3r3h_A 58 LTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQF 137 (242)
T ss_dssp HHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCE
T ss_pred hcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCE
Confidence 35678999999999999999999875 78999999965 8888875 3589999999855 1 2579
Q ss_pred cEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeee
Q 030291 75 DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVI 118 (180)
Q Consensus 75 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~ 118 (180)
|+|++... ......+++++.++|+| ||.+++.+...
T Consensus 138 D~V~~d~~-----~~~~~~~l~~~~~~Lkp---GG~lv~d~~~~ 173 (242)
T 3r3h_A 138 DFIFIDAD-----KTNYLNYYELALKLVTP---KGLIAIDNIFW 173 (242)
T ss_dssp EEEEEESC-----GGGHHHHHHHHHHHEEE---EEEEEEECSSS
T ss_pred eEEEEcCC-----hHHhHHHHHHHHHhcCC---CeEEEEECCcc
Confidence 99998654 22234789999999999 77777765544
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=7.5e-13 Score=101.62 Aligned_cols=96 Identities=14% Similarity=0.222 Sum_probs=79.0
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCcccC---CCccEEEecccccc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQFI---PPSDAFFFKTVFHF 85 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~~~---~~~D~v~~~~~l~~ 85 (180)
++.+|||+|||+|.++..+++. +.+++++|+++ +++.+++ ..++++.++|+.+.. ..||+|+++..+|+
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV 310 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence 5779999999999999999988 66899999976 8888875 235899999997632 36999999998887
Q ss_pred ---CChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 86 ---FDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 86 ---~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
.......++++++.++|+| ||.++++.
T Consensus 311 ~~~~~~~~~~~~l~~~~~~Lkp---GG~l~iv~ 340 (381)
T 3dmg_A 311 GGAVILDVAQAFVNVAAARLRP---GGVFFLVS 340 (381)
T ss_dssp TCSSCCHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred cccccHHHHHHHHHHHHHhcCc---CcEEEEEE
Confidence 3334455899999999999 88888864
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=8.8e-13 Score=97.05 Aligned_cols=97 Identities=12% Similarity=0.043 Sum_probs=72.3
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCC--CC------CeeEE--ecCCcc-cCCCccEEEecc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ--TD------NLKYI--EGDMFQ-FIPPSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~--~~------~~~~~--~~d~~~-~~~~~D~v~~~~ 81 (180)
++++.+|||||||+|.++..+++. .+++++|+++|+..+++ .. ++.+. ++|+.+ +...||+|++..
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~Vvsd~ 156 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKMEPFQADTVLCDI 156 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCCCCCSEEEECC
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCCCCCcCEEEECC
Confidence 567889999999999999998887 47999999776544432 12 78899 899855 333699999987
Q ss_pred ccccCChHH-----HHHHHHHHHHhhccCCCCc--EEEEEEe
Q 030291 82 VFHFFDDED-----CLKLLKKCREAIASNGERG--KVLIIDI 116 (180)
Q Consensus 82 ~l~~~~~~~-----~~~~l~~~~~~L~p~~~~G--~~~~~~~ 116 (180)
+ ++..+.. ...+|+.+.++|+| || .+++..+
T Consensus 157 ~-~~~~~~~~d~~~~l~~L~~~~r~Lkp---GG~~~~v~~~~ 194 (276)
T 2wa2_A 157 G-ESNPTAAVEASRTLTVLNVISRWLEY---NQGCGFCVKVL 194 (276)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHH---STTCEEEEEES
T ss_pred C-cCCCchhhhHHHHHHHHHHHHHHhcc---CCCcEEEEEeC
Confidence 7 4443321 11378999999999 89 7777544
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.6e-13 Score=98.67 Aligned_cols=96 Identities=14% Similarity=0.265 Sum_probs=76.4
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCccc-----CCCccEEEe
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQF-----IPPSDAFFF 79 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~-----~~~~D~v~~ 79 (180)
..++.+|||||||+|..+..+++..+..+++++|+++ +++.+++ ..++++.++|+.+. ...||+|++
T Consensus 69 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~ 148 (232)
T 3ntv_A 69 MNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFI 148 (232)
T ss_dssp HHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred hcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence 3567899999999999999999987889999999965 8888764 25899999999663 246999997
Q ss_pred ccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 80 KTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 80 ~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
.... .+ ...+++++.++|+| ||.+++.+.
T Consensus 149 ~~~~---~~--~~~~l~~~~~~Lkp---gG~lv~d~~ 177 (232)
T 3ntv_A 149 DAAK---AQ--SKKFFEIYTPLLKH---QGLVITDNV 177 (232)
T ss_dssp ETTS---SS--HHHHHHHHGGGEEE---EEEEEEECT
T ss_pred cCcH---HH--HHHHHHHHHHhcCC---CeEEEEeeC
Confidence 6442 22 33789999999999 777766443
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.8e-12 Score=94.83 Aligned_cols=98 Identities=10% Similarity=0.059 Sum_probs=72.6
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCC--CC------CeeEE--ecCCcc-cCCCccEEEecc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ--TD------NLKYI--EGDMFQ-FIPPSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~--~~------~~~~~--~~d~~~-~~~~~D~v~~~~ 81 (180)
++++.+|||||||+|.++..+++. .+++++|+++++..+++ .. ++.+. ++|+.+ +...||+|++..
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~V~sd~ 148 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVERTDVIMCDV 148 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCCCCCCcEEEEeC
Confidence 567889999999999999988877 57999999776544432 12 68888 899865 223699999987
Q ss_pred ccccCChHH-----HHHHHHHHHHhhccCCCCc--EEEEEEee
Q 030291 82 VFHFFDDED-----CLKLLKKCREAIASNGERG--KVLIIDIV 117 (180)
Q Consensus 82 ~l~~~~~~~-----~~~~l~~~~~~L~p~~~~G--~~~~~~~~ 117 (180)
+ ++.++.. ...+|+.+.++|+| || .+++..+.
T Consensus 149 ~-~~~~~~~~d~~~~l~~L~~~~r~Lkp---GG~~~fv~kv~~ 187 (265)
T 2oxt_A 149 G-ESSPKWSVESERTIKILELLEKWKVK---NPSADFVVKVLC 187 (265)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCEEEEEESC
T ss_pred c-ccCCccchhHHHHHHHHHHHHHHhcc---CCCeEEEEEeCC
Confidence 7 5443321 11378999999999 88 77775543
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.39 E-value=5e-13 Score=97.87 Aligned_cols=93 Identities=15% Similarity=0.208 Sum_probs=76.7
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-CCCeeEEecCCcc-cC--CCccEEEeccccccCCh
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-TDNLKYIEGDMFQ-FI--PPSDAFFFKTVFHFFDD 88 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-~~~~~~~~~d~~~-~~--~~~D~v~~~~~l~~~~~ 88 (180)
.++.+|||||||+|.++..+++..++.+++++|+++ +++.+++ ..++.+..+|+.+ +. .+||+|++..+.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~----- 158 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP----- 158 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC-----
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh-----
Confidence 467899999999999999999988788999999966 8888875 5678899999854 22 369999986653
Q ss_pred HHHHHHHHHHHHhhccCCCCcEEEEEEeee
Q 030291 89 EDCLKLLKKCREAIASNGERGKVLIIDIVI 118 (180)
Q Consensus 89 ~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~ 118 (180)
.+++++.++|+| ||.+++..+..
T Consensus 159 ----~~l~~~~~~L~p---gG~l~~~~~~~ 181 (269)
T 1p91_A 159 ----CKAEELARVVKP---GGWVITATPGP 181 (269)
T ss_dssp ----CCHHHHHHHEEE---EEEEEEEEECT
T ss_pred ----hhHHHHHHhcCC---CcEEEEEEcCH
Confidence 348999999999 89998887654
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=4.1e-13 Score=95.73 Aligned_cols=97 Identities=13% Similarity=0.184 Sum_probs=76.7
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCC-CCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccC--------CCcc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFP-GIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFI--------PPSD 75 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~--------~~~D 75 (180)
..++.+|||||||+|..+..+++..| +.+++++|+++ +++.+++ ..++++.++|..+.. ..||
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD 135 (223)
T 3duw_A 56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD 135 (223)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence 35678999999999999999999987 78999999965 8877764 346999999986521 4599
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 76 AFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 76 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
+|++..... ....+++++.++|+| ||.+++.+..
T Consensus 136 ~v~~d~~~~-----~~~~~l~~~~~~L~p---gG~lv~~~~~ 169 (223)
T 3duw_A 136 FIFIDADKQ-----NNPAYFEWALKLSRP---GTVIIGDNVV 169 (223)
T ss_dssp EEEECSCGG-----GHHHHHHHHHHTCCT---TCEEEEESCS
T ss_pred EEEEcCCcH-----HHHHHHHHHHHhcCC---CcEEEEeCCC
Confidence 999865522 233789999999999 8877775543
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.39 E-value=5.2e-13 Score=95.26 Aligned_cols=97 Identities=11% Similarity=0.122 Sum_probs=76.6
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCC-CCeEEEeeCch-hhccCCC-------CCCeeEEecCCccc---C------CCcc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFP-GIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQF---I------PPSD 75 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~---~------~~~D 75 (180)
.++.+|||||||+|..+..+++..| +.+++++|+++ +++.+++ ..++++.++|..+. . ..||
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD 142 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence 4678999999999999999999876 78999999965 8877764 35699999998542 1 5799
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeee
Q 030291 76 AFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVI 118 (180)
Q Consensus 76 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~ 118 (180)
+|++... ......+++++.++|+| ||.+++.+...
T Consensus 143 ~v~~~~~-----~~~~~~~l~~~~~~L~p---gG~lv~~~~~~ 177 (225)
T 3tr6_A 143 LIYIDAD-----KANTDLYYEESLKLLRE---GGLIAVDNVLR 177 (225)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHHEEE---EEEEEEECSSG
T ss_pred EEEECCC-----HHHHHHHHHHHHHhcCC---CcEEEEeCCCc
Confidence 9997553 22234789999999999 78877766543
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=3.7e-13 Score=96.86 Aligned_cols=92 Identities=22% Similarity=0.216 Sum_probs=74.6
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcccCC---CccEEEeccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQFIP---PSDAFFFKTV 82 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~~~---~~D~v~~~~~ 82 (180)
..++.+|||||||+|.++..+++..+ .+++++|+++ +++.+++ ..++++..+|.....+ .||+|++...
T Consensus 89 ~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~ 167 (235)
T 1jg1_A 89 LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIVTAG 167 (235)
T ss_dssp CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSB
T ss_pred CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCCCccEEEECCc
Confidence 56788999999999999999999876 7899999965 7777764 2469999999744332 4999999999
Q ss_pred cccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 83 FHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 83 l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
++++++ ++.+.|+| ||.+++...
T Consensus 168 ~~~~~~--------~~~~~L~p---gG~lvi~~~ 190 (235)
T 1jg1_A 168 APKIPE--------PLIEQLKI---GGKLIIPVG 190 (235)
T ss_dssp BSSCCH--------HHHHTEEE---EEEEEEEEC
T ss_pred HHHHHH--------HHHHhcCC---CcEEEEEEe
Confidence 988764 57889999 788877654
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.38 E-value=2.7e-13 Score=92.50 Aligned_cols=94 Identities=12% Similarity=0.059 Sum_probs=72.3
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCcccC-------CCccEEEecc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQFI-------PPSDAFFFKT 81 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~~~-------~~~D~v~~~~ 81 (180)
++.+|||+|||+|.++..+++..+. ++++|+++ +++.+++ ..++++.++|+.+.. ..||+|+++.
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 6789999999999999999988544 99999965 8888775 227999999986522 1699999987
Q ss_pred ccccCChHHHHHHHHHHH--HhhccCCCCcEEEEEEee
Q 030291 82 VFHFFDDEDCLKLLKKCR--EAIASNGERGKVLIIDIV 117 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~--~~L~p~~~~G~~~~~~~~ 117 (180)
.++ .+.. .+++.+. ++|+| ||.+++....
T Consensus 119 ~~~--~~~~--~~~~~~~~~~~L~~---gG~~~~~~~~ 149 (171)
T 1ws6_A 119 PYA--MDLA--ALFGELLASGLVEA---GGLYVLQHPK 149 (171)
T ss_dssp CTT--SCTT--HHHHHHHHHTCEEE---EEEEEEEEET
T ss_pred CCc--hhHH--HHHHHHHhhcccCC---CcEEEEEeCC
Confidence 765 3333 4566666 99999 7877775543
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-13 Score=104.49 Aligned_cols=100 Identities=14% Similarity=0.184 Sum_probs=76.5
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHH-CCCCeEEEeeCch-hhccCCC-----------------CCCeeEEec
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEA-FPGIKCTVLDLPH-AVTDMPQ-----------------TDNLKYIEG 65 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~-~~~~~~~~~D~~~-~~~~a~~-----------------~~~~~~~~~ 65 (180)
++..+. +.++.+|||+|||+|.++..+++. .+..+++++|+++ +++.+++ ..++++.++
T Consensus 97 ~l~~l~--~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~ 174 (336)
T 2b25_A 97 ILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHK 174 (336)
T ss_dssp HHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEES
T ss_pred HHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEEC
Confidence 344444 678889999999999999999987 5668999999965 7777754 158999999
Q ss_pred CCccc---CC--CccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 66 DMFQF---IP--PSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 66 d~~~~---~~--~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
|+.+. .+ .||+|++.. +++. .+++++.++|+| ||.+++...
T Consensus 175 d~~~~~~~~~~~~fD~V~~~~-----~~~~--~~l~~~~~~Lkp---gG~lv~~~~ 220 (336)
T 2b25_A 175 DISGATEDIKSLTFDAVALDM-----LNPH--VTLPVFYPHLKH---GGVCAVYVV 220 (336)
T ss_dssp CTTCCC-------EEEEEECS-----SSTT--TTHHHHGGGEEE---EEEEEEEES
T ss_pred ChHHcccccCCCCeeEEEECC-----CCHH--HHHHHHHHhcCC---CcEEEEEeC
Confidence 99653 22 599999853 2333 469999999999 888887654
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.38 E-value=9.9e-13 Score=98.11 Aligned_cols=97 Identities=15% Similarity=0.262 Sum_probs=74.9
Q ss_pred CeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCccc---C--CCccEEEeccccc
Q 030291 17 RSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQF---I--PPSDAFFFKTVFH 84 (180)
Q Consensus 17 ~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~---~--~~~D~v~~~~~l~ 84 (180)
.+|||||||+|.++..+++.+|+.+++++|+++ +++.+++ ..+++++++|..+. . ..||+|++....+
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~ 170 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAG 170 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTT
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCCc
Confidence 399999999999999999999999999999965 8887764 36899999998652 2 3699999865433
Q ss_pred cCChHH--HHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 85 FFDDED--CLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 85 ~~~~~~--~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
...... ..++++.++++|+| ||.+++...
T Consensus 171 ~~~~~~L~t~efl~~~~r~Lkp---gGvlv~~~~ 201 (317)
T 3gjy_A 171 AITPQNFTTVEFFEHCHRGLAP---GGLYVANCG 201 (317)
T ss_dssp SCCCGGGSBHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred cccchhhhHHHHHHHHHHhcCC---CcEEEEEec
Confidence 221111 24889999999999 776666543
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=6e-13 Score=98.44 Aligned_cols=95 Identities=19% Similarity=0.279 Sum_probs=73.7
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccC-CCc---cEEEec-
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFI-PPS---DAFFFK- 80 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~-~~~---D~v~~~- 80 (180)
.++.+|||+|||+|.++..+++. |+.+++++|+++ +++.+++ ..++++.++|+.+.. +.| |+|+++
T Consensus 122 ~~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~IvsnP 200 (284)
T 1nv8_A 122 YGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNP 200 (284)
T ss_dssp HTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECC
T ss_pred cCCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEcC
Confidence 35679999999999999999999 899999999966 8888864 235999999997754 358 999997
Q ss_pred -----------cccccCChHH------HHHHHHHHH-HhhccCCCCcEEEE
Q 030291 81 -----------TVFHFFDDED------CLKLLKKCR-EAIASNGERGKVLI 113 (180)
Q Consensus 81 -----------~~l~~~~~~~------~~~~l~~~~-~~L~p~~~~G~~~~ 113 (180)
.+. |-+... -..+++++. +.|+| ||.+++
T Consensus 201 Pyi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~p---gG~l~~ 247 (284)
T 1nv8_A 201 PYVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTS---GKIVLM 247 (284)
T ss_dssp CCBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCT---TCEEEE
T ss_pred CCCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCC---CCEEEE
Confidence 122 222211 116799999 99999 788776
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.6e-12 Score=88.90 Aligned_cols=97 Identities=18% Similarity=0.260 Sum_probs=72.8
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCC---------CeEEEeeCchhhccCCCCCCeeEE-ecCCccc---------C--
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPG---------IKCTVLDLPHAVTDMPQTDNLKYI-EGDMFQF---------I-- 71 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~---------~~~~~~D~~~~~~~a~~~~~~~~~-~~d~~~~---------~-- 71 (180)
++++.+|||+|||+|.++..+++..+. .+++++|++++. ...++++. .+|+... .
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~----~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 95 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF----PLEGATFLCPADVTDPRTSQRILEVLPG 95 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC----CCTTCEEECSCCTTSHHHHHHHHHHSGG
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc----cCCCCeEEEeccCCCHHHHHHHHHhcCC
Confidence 467889999999999999999999654 789999997732 13468888 8887541 1
Q ss_pred CCccEEEeccccccC----ChHH-----HHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 72 PPSDAFFFKTVFHFF----DDED-----CLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 72 ~~~D~v~~~~~l~~~----~~~~-----~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
..||+|++...++.. .+.. ...+++++.++|+| ||.+++..+
T Consensus 96 ~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~~~ 146 (196)
T 2nyu_A 96 RRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQP---GGTFLCKTW 146 (196)
T ss_dssp GCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEEC
T ss_pred CCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcC---CCEEEEEec
Confidence 269999997655432 2221 13789999999999 888888654
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.38 E-value=5.6e-13 Score=95.74 Aligned_cols=96 Identities=14% Similarity=0.272 Sum_probs=77.9
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCccc------CCCccEEE
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQF------IPPSDAFF 78 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~------~~~~D~v~ 78 (180)
..++.+|||||||+|..+..+++..|+.+++++|+++ +++.+++ ..++++.++|..+. ...||+|+
T Consensus 52 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 131 (233)
T 2gpy_A 52 MAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLF 131 (233)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEE
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEE
Confidence 4567899999999999999999998888999999965 8877764 25799999998652 24699999
Q ss_pred eccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 79 FKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 79 ~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
+....+ +. ..+++++.++|+| ||.+++.+.
T Consensus 132 ~~~~~~---~~--~~~l~~~~~~L~p---gG~lv~~~~ 161 (233)
T 2gpy_A 132 IDAAKG---QY--RRFFDMYSPMVRP---GGLILSDNV 161 (233)
T ss_dssp EEGGGS---CH--HHHHHHHGGGEEE---EEEEEEETT
T ss_pred ECCCHH---HH--HHHHHHHHHHcCC---CeEEEEEcC
Confidence 976653 33 3789999999999 888877644
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.37 E-value=3.2e-12 Score=89.22 Aligned_cols=102 Identities=15% Similarity=0.324 Sum_probs=74.2
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCCCCCeeEEecCCcccC-------------
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQFI------------- 71 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~d~~~~~------------- 71 (180)
+.+.+. .++++.+|||+|||+|.++..+++. ..+++++|++++. ...++++.++|+.+..
T Consensus 16 i~~~~~-~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~~----~~~~v~~~~~D~~~~~~~~~~~~~~~~~~ 88 (191)
T 3dou_A 16 LLDRYR-VVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEME----EIAGVRFIRCDIFKETIFDDIDRALREEG 88 (191)
T ss_dssp HHHHHC-CSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCCC----CCTTCEEEECCTTSSSHHHHHHHHHHHHT
T ss_pred HHHHcC-CCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEeccccc----cCCCeEEEEccccCHHHHHHHHHHhhccc
Confidence 334443 2467899999999999999999887 7789999997632 2358999999986531
Q ss_pred -CCccEEEeccccccCC----h-----HHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 72 -PPSDAFFFKTVFHFFD----D-----EDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 72 -~~~D~v~~~~~l~~~~----~-----~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
+.||+|++........ + .....+++.+.++|+| ||.+++..+
T Consensus 89 ~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~Lkp---GG~lv~k~~ 140 (191)
T 3dou_A 89 IEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRN---GGNVLLKQF 140 (191)
T ss_dssp CSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred CCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccC---CCEEEEEEc
Confidence 3799999965432211 1 1134678899999999 788776543
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-12 Score=92.28 Aligned_cols=96 Identities=16% Similarity=0.242 Sum_probs=74.3
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------C--CCeeEEecCCccc-----CCC-ccEEEe
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------T--DNLKYIEGDMFQF-----IPP-SDAFFF 79 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~--~~~~~~~~d~~~~-----~~~-~D~v~~ 79 (180)
++.+|||+|||+|.++..++... ..+++++|+++ +++.+++ . .++++.++|+.+. ... ||+|++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQ-AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHcc-CCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 56899999999999999877764 35899999966 8888874 2 5899999998652 236 999999
Q ss_pred ccccccCChHHHHHHHHHH--HHhhccCCCCcEEEEEEee
Q 030291 80 KTVFHFFDDEDCLKLLKKC--REAIASNGERGKVLIIDIV 117 (180)
Q Consensus 80 ~~~l~~~~~~~~~~~l~~~--~~~L~p~~~~G~~~~~~~~ 117 (180)
...++ ..+.. .+++.+ .++|+| ||.+++....
T Consensus 132 ~~~~~-~~~~~--~~l~~~~~~~~Lkp---gG~l~i~~~~ 165 (201)
T 2ift_A 132 DPPFH-FNLAE--QAISLLCENNWLKP---NALIYVETEK 165 (201)
T ss_dssp CCCSS-SCHHH--HHHHHHHHTTCEEE---EEEEEEEEES
T ss_pred CCCCC-CccHH--HHHHHHHhcCccCC---CcEEEEEECC
Confidence 87754 44444 678888 567999 7887776544
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.1e-13 Score=98.38 Aligned_cols=134 Identities=15% Similarity=0.150 Sum_probs=95.8
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----C--CCeeEEecCCccc--CCCccEEEeccccc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----T--DNLKYIEGDMFQF--IPPSDAFFFKTVFH 84 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~--~~~~~~~~d~~~~--~~~~D~v~~~~~l~ 84 (180)
++.+|||+|||+|.++..+++. +.+++++|+++ +++.+++ . .++++.++|+.+. ...||+|+++..++
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~ 155 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALT--GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWG 155 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCS
T ss_pred CCCEEEECccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcC
Confidence 6789999999999999999987 57899999966 8888874 1 4899999999663 33699999999999
Q ss_pred cCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEE
Q 030291 85 FFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHY 164 (180)
Q Consensus 85 ~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 164 (180)
+..+.. ..+.+++++|+| ||.+++.... .......... .+..+.+++..++...|.-.+
T Consensus 156 ~~~~~~--~~~~~~~~~L~p---gG~~i~~~~~-------------~~~~~~~~~l---p~~~~~~~~~~~l~~~g~~~i 214 (241)
T 3gdh_A 156 GPDYAT--AETFDIRTMMSP---DGFEIFRLSK-------------KITNNIVYFL---PRNADIDQVASLAGPGGQVEI 214 (241)
T ss_dssp SGGGGG--SSSBCTTTSCSS---CHHHHHHHHH-------------HHCSCEEEEE---ETTBCHHHHHHTTCTTCCEEE
T ss_pred Ccchhh--hHHHHHHhhcCC---cceeHHHHHH-------------hhCCceEEEC---CCCCCHHHHHHHhccCCCEEE
Confidence 887776 468889999999 8875442110 0011111111 134567778888877776655
Q ss_pred EEeecCC
Q 030291 165 KIAPIFG 171 (180)
Q Consensus 165 ~~~~~~~ 171 (180)
+.....+
T Consensus 215 ~~~~~~~ 221 (241)
T 3gdh_A 215 EQNFLNN 221 (241)
T ss_dssp EEEEETT
T ss_pred EehhhcC
Confidence 5444433
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.35 E-value=1e-12 Score=90.38 Aligned_cols=97 Identities=9% Similarity=0.061 Sum_probs=74.0
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCccc----CCCccEEEecc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQF----IPPSDAFFFKT 81 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~----~~~~D~v~~~~ 81 (180)
.++.+|||+|||+|.++..+++. +..+++++|+++ +++.+++ ..++++.++|+.+. ...||+|+++.
T Consensus 30 ~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~ 108 (177)
T 2esr_A 30 FNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 108 (177)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred cCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECC
Confidence 46789999999999999998887 456899999965 8887764 14799999998652 23699999987
Q ss_pred ccccCChHHHHHHHHHHH--HhhccCCCCcEEEEEEee
Q 030291 82 VFHFFDDEDCLKLLKKCR--EAIASNGERGKVLIIDIV 117 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~--~~L~p~~~~G~~~~~~~~ 117 (180)
.++. .....+++.+. ++|+| ||.+++....
T Consensus 109 ~~~~---~~~~~~~~~l~~~~~L~~---gG~l~~~~~~ 140 (177)
T 2esr_A 109 PYAK---ETIVATIEALAAKNLLSE---QVMVVCETDK 140 (177)
T ss_dssp SSHH---HHHHHHHHHHHHTTCEEE---EEEEEEEEET
T ss_pred CCCc---chHHHHHHHHHhCCCcCC---CcEEEEEECC
Confidence 6532 22236677777 99999 7877776543
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.9e-12 Score=93.89 Aligned_cols=96 Identities=16% Similarity=0.157 Sum_probs=76.1
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCC-CCeEEEeeCch-hhccCCC-------CCCeeEEecCCccc----------CCCc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFP-GIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQF----------IPPS 74 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~----------~~~~ 74 (180)
.++.+|||||||+|..+..+++..| +.+++++|+++ +++.+++ ..+++++.+|..+. ...|
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 4678999999999999999999976 78999999965 8877764 25799999998541 2469
Q ss_pred cEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 75 DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 75 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
|+|++.... .+ ...+++++.++|+| ||.+++.+..
T Consensus 158 D~V~~d~~~---~~--~~~~l~~~~~~Lkp---GG~lv~d~~~ 192 (247)
T 1sui_A 158 DFIFVDADK---DN--YLNYHKRLIDLVKV---GGVIGYDNTL 192 (247)
T ss_dssp SEEEECSCS---TT--HHHHHHHHHHHBCT---TCCEEEECTT
T ss_pred EEEEEcCch---HH--HHHHHHHHHHhCCC---CeEEEEecCC
Confidence 999986542 22 33789999999999 8887775543
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.35 E-value=9.3e-13 Score=94.03 Aligned_cols=92 Identities=10% Similarity=0.155 Sum_probs=72.5
Q ss_pred CeEEEeCCcccHHHHHHHHHCC-CCeEEEeeCch-hhccCCC-------C-CCeeEEecCCcc---cC--CCccEEEecc
Q 030291 17 RSMVDVGGGTGAFARIISEAFP-GIKCTVLDLPH-AVTDMPQ-------T-DNLKYIEGDMFQ---FI--PPSDAFFFKT 81 (180)
Q Consensus 17 ~~iLdiG~G~G~~~~~l~~~~~-~~~~~~~D~~~-~~~~a~~-------~-~~~~~~~~d~~~---~~--~~~D~v~~~~ 81 (180)
.+|||||||+|..+..+++..+ +.+++++|+++ +++.+++ . .++++.++|..+ .. ..||+|++..
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~ 137 (221)
T 3dr5_A 58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQV 137 (221)
T ss_dssp CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECC
T ss_pred CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcC
Confidence 3999999999999999999864 78999999965 8887764 2 589999999855 22 4699999865
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
... + ...+++++.++|+| ||.+++.+.
T Consensus 138 ~~~---~--~~~~l~~~~~~Lkp---GG~lv~dn~ 164 (221)
T 3dr5_A 138 SPM---D--LKALVDAAWPLLRR---GGALVLADA 164 (221)
T ss_dssp CTT---T--HHHHHHHHHHHEEE---EEEEEETTT
T ss_pred cHH---H--HHHHHHHHHHHcCC---CcEEEEeCC
Confidence 432 2 23689999999999 777776443
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.8e-12 Score=89.67 Aligned_cols=97 Identities=11% Similarity=0.063 Sum_probs=73.7
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCccc-------CCCccEEE
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQF-------IPPSDAFF 78 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~-------~~~~D~v~ 78 (180)
.++.+|||+|||+|.++..+++. +..+++++|+++ +++.+++ ..++++.++|+.+. ...||+|+
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~ 121 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVSR-GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 121 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCCEEEeCCccCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEE
Confidence 46789999999999999988774 357899999965 8888774 25799999998652 34699999
Q ss_pred eccccccCChHHHHHHHHHH--HHhhccCCCCcEEEEEEee
Q 030291 79 FKTVFHFFDDEDCLKLLKKC--REAIASNGERGKVLIIDIV 117 (180)
Q Consensus 79 ~~~~l~~~~~~~~~~~l~~~--~~~L~p~~~~G~~~~~~~~ 117 (180)
++..++. .+.. ..++.+ .++|+| ||.+++....
T Consensus 122 ~~~~~~~-~~~~--~~~~~l~~~~~L~~---gG~l~~~~~~ 156 (187)
T 2fhp_A 122 LDPPYAK-QEIV--SQLEKMLERQLLTN---EAVIVCETDK 156 (187)
T ss_dssp ECCCGGG-CCHH--HHHHHHHHTTCEEE---EEEEEEEEET
T ss_pred ECCCCCc-hhHH--HHHHHHHHhcccCC---CCEEEEEeCC
Confidence 9877543 2333 556666 788999 7877776543
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.8e-12 Score=97.75 Aligned_cols=97 Identities=14% Similarity=0.202 Sum_probs=73.9
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCC-------CCCeeEEecCCcc-cC--CCccEEEeccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ-------TDNLKYIEGDMFQ-FI--PPSDAFFFKTV 82 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~-------~~~~~~~~~d~~~-~~--~~~D~v~~~~~ 82 (180)
..++.+|||||||+|.++..+++. +..+++++|.+++++.+++ ..+++++++|+.+ +. ..||+|++..+
T Consensus 36 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~ 114 (328)
T 1g6q_1 36 LFKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWM 114 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCC
T ss_pred hcCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCc
Confidence 456789999999999999988887 3458999999877776653 3579999999965 23 36999999865
Q ss_pred cccCCh-HHHHHHHHHHHHhhccCCCCcEEEE
Q 030291 83 FHFFDD-EDCLKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 83 l~~~~~-~~~~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
.+++.. .....++..+.++|+| ||.++.
T Consensus 115 ~~~l~~~~~~~~~l~~~~~~Lkp---gG~li~ 143 (328)
T 1g6q_1 115 GYFLLYESMMDTVLYARDHYLVE---GGLIFP 143 (328)
T ss_dssp BTTBSTTCCHHHHHHHHHHHEEE---EEEEES
T ss_pred hhhcccHHHHHHHHHHHHhhcCC---CeEEEE
Confidence 444432 2233789999999999 777763
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.33 E-value=5.4e-12 Score=94.63 Aligned_cols=103 Identities=11% Similarity=0.118 Sum_probs=77.0
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCC-CCeEEEeeCch-hhccCCC------CCCeeEEecCCccc---CCCccEEEec-
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFP-GIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQF---IPPSDAFFFK- 80 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~---~~~~D~v~~~- 80 (180)
..++.+|||+|||+|..+..+++..+ ..+++++|+++ +++.+++ ..++++.++|..+. ...||+|++.
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~ 195 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 195 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeC
Confidence 46778999999999999999999864 57999999966 7877764 34799999998652 2369999983
Q ss_pred -----cccccCChH--------------HHHHHHHHHHHhhccCCCCcEEEEEEeee
Q 030291 81 -----TVFHFFDDE--------------DCLKLLKKCREAIASNGERGKVLIIDIVI 118 (180)
Q Consensus 81 -----~~l~~~~~~--------------~~~~~l~~~~~~L~p~~~~G~~~~~~~~~ 118 (180)
+++++.++. .+..+|+++.++||| ||.++++....
T Consensus 196 Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~Lkp---GG~lv~stcs~ 249 (315)
T 1ixk_A 196 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKP---GGILVYSTCSL 249 (315)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEESCC
T ss_pred CCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCC---CCEEEEEeCCC
Confidence 334433321 124889999999999 88888876543
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.4e-12 Score=91.90 Aligned_cols=95 Identities=8% Similarity=0.062 Sum_probs=78.1
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCcccC-C-CccEEEecccccc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQFI-P-PSDAFFFKTVFHF 85 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~~~-~-~~D~v~~~~~l~~ 85 (180)
.++.+|||||||+|.++..+. +..+++++|++. +++.++. ..+..+.+.|..... + .||+|++.-++|+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh~ 180 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLPL 180 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHHH
T ss_pred CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHHH
Confidence 568899999999999999887 788999999966 8888875 567889999997633 2 6999999999999
Q ss_pred CChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 86 FDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
+++.+....+ ++.+.|++ ++++++-+
T Consensus 181 LE~q~~~~~~-~ll~aL~~----~~vvVsfP 206 (253)
T 3frh_A 181 LEREQAGSAM-ALLQSLNT----PRMAVSFP 206 (253)
T ss_dssp HHHHSTTHHH-HHHHHCBC----SEEEEEEE
T ss_pred hhhhchhhHH-HHHHHhcC----CCEEEEcC
Confidence 9887766666 89999999 55555443
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.32 E-value=2.4e-12 Score=93.28 Aligned_cols=93 Identities=20% Similarity=0.314 Sum_probs=72.0
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC--------------CCCeeEEecCCcccC------C
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ--------------TDNLKYIEGDMFQFI------P 72 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~--------------~~~~~~~~~d~~~~~------~ 72 (180)
+++.+|||||||+|.++..+++.+|...++++|+++ +++.+++ ..++++.++|+.+.+ .
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence 367899999999999999999999888999999966 7766532 258999999986522 2
Q ss_pred CccEEEeccccccCChHHH-----------HHHHHHHHHhhccCCCCcEEEEE
Q 030291 73 PSDAFFFKTVFHFFDDEDC-----------LKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 73 ~~D~v~~~~~l~~~~~~~~-----------~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
.+|.|+... +++.. ..+++++.++|+| ||.+++.
T Consensus 128 ~~d~v~~~~-----p~p~~k~~~~~~r~~~~~~l~~~~~~Lkp---gG~l~~~ 172 (246)
T 2vdv_E 128 QLSKMFFCF-----PDPHFKQRKHKARIITNTLLSEYAYVLKE---GGVVYTI 172 (246)
T ss_dssp CEEEEEEES-----CCCC------CSSCCCHHHHHHHHHHEEE---EEEEEEE
T ss_pred ccCEEEEEC-----CCcccccchhHHhhccHHHHHHHHHHcCC---CCEEEEE
Confidence 588887532 33210 3789999999999 8888774
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.4e-12 Score=92.12 Aligned_cols=95 Identities=15% Similarity=0.245 Sum_probs=74.1
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCC-CCeEEEeeCch-hhccCCC-------CCCeeEEecCCccc---CCCccEEEecc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFP-GIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQF---IPPSDAFFFKT 81 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~---~~~~D~v~~~~ 81 (180)
.++.+|||||||+|..+..+++..+ +.+++++|+++ +++.+++ ..++++.++|..+. .+.||+|++..
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~ 134 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMDC 134 (210)
T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEET
T ss_pred hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEcC
Confidence 4678999999999999999999876 78999999965 8887764 24799999998552 11299999864
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
.. .+. ..+++++.++|+| ||.+++.+.
T Consensus 135 ~~---~~~--~~~l~~~~~~Lkp---gG~lv~~~~ 161 (210)
T 3c3p_A 135 DV---FNG--ADVLERMNRCLAK---NALLIAVNA 161 (210)
T ss_dssp TT---SCH--HHHHHHHGGGEEE---EEEEEEESS
T ss_pred Ch---hhh--HHHHHHHHHhcCC---CeEEEEECc
Confidence 32 223 3789999999999 777776543
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.30 E-value=3.1e-12 Score=94.15 Aligned_cols=100 Identities=13% Similarity=0.178 Sum_probs=78.9
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHH-CCCCeEEEeeCch-hhccCCC---------CCCeeEEecCCccc-C-
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEA-FPGIKCTVLDLPH-AVTDMPQ---------TDNLKYIEGDMFQF-I- 71 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~-~~~~~~~~~D~~~-~~~~a~~---------~~~~~~~~~d~~~~-~- 71 (180)
+++.+. +.++.+|||+|||+|.++..+++. .|..+++++|+++ +++.+++ ..++++.++|+.+. .
T Consensus 91 i~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~ 168 (280)
T 1i9g_A 91 IVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELP 168 (280)
T ss_dssp HHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCC
T ss_pred HHHHcC--CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCC
Confidence 344455 677889999999999999999986 5678999999965 7777653 24799999999653 2
Q ss_pred -CCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 72 -PPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 72 -~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
..||+|++ +.+++. .+++++.++|+| ||.+++...
T Consensus 169 ~~~~D~v~~-----~~~~~~--~~l~~~~~~L~p---gG~l~~~~~ 204 (280)
T 1i9g_A 169 DGSVDRAVL-----DMLAPW--EVLDAVSRLLVA---GGVLMVYVA 204 (280)
T ss_dssp TTCEEEEEE-----ESSCGG--GGHHHHHHHEEE---EEEEEEEES
T ss_pred CCceeEEEE-----CCcCHH--HHHHHHHHhCCC---CCEEEEEeC
Confidence 35999998 344555 779999999999 888888764
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.3e-11 Score=88.14 Aligned_cols=93 Identities=19% Similarity=0.185 Sum_probs=75.4
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHC-----CCCeEEEeeCch-hhccCCC-----------CCCeeEEecCCcccC----
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAF-----PGIKCTVLDLPH-AVTDMPQ-----------TDNLKYIEGDMFQFI---- 71 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~-----~~~~~~~~D~~~-~~~~a~~-----------~~~~~~~~~d~~~~~---- 71 (180)
++++.+|||||||+|.++..+++.. |..+++++|+++ +++.+++ ..++++.++|..+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence 5678899999999999999999886 457999999965 7777764 247999999986533
Q ss_pred ---CCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 72 ---PPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 72 ---~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
..||+|++...++++ ++++.+.|+| ||.+++...
T Consensus 158 ~~~~~fD~I~~~~~~~~~--------~~~~~~~Lkp---gG~lv~~~~ 194 (227)
T 2pbf_A 158 KELGLFDAIHVGASASEL--------PEILVDLLAE---NGKLIIPIE 194 (227)
T ss_dssp HHHCCEEEEEECSBBSSC--------CHHHHHHEEE---EEEEEEEEE
T ss_pred ccCCCcCEEEECCchHHH--------HHHHHHhcCC---CcEEEEEEc
Confidence 369999999988865 4667899999 888887654
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.5e-12 Score=93.10 Aligned_cols=92 Identities=16% Similarity=0.197 Sum_probs=74.0
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCC------CCeEEEeeCch-hhccCCC-----------CCCeeEEecCCcccC---
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFP------GIKCTVLDLPH-AVTDMPQ-----------TDNLKYIEGDMFQFI--- 71 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~------~~~~~~~D~~~-~~~~a~~-----------~~~~~~~~~d~~~~~--- 71 (180)
+.++.+|||||||+|.++..+++..+ ..+++++|+++ +++.+++ ..++++.++|..+..
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN 161 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence 56778999999999999999988653 25899999965 8877764 247999999986633
Q ss_pred CCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 72 PPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 72 ~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
..||+|++...++++. +++.+.|+| ||.+++.-
T Consensus 162 ~~fD~I~~~~~~~~~~--------~~~~~~Lkp---gG~lvi~~ 194 (227)
T 1r18_A 162 APYNAIHVGAAAPDTP--------TELINQLAS---GGRLIVPV 194 (227)
T ss_dssp CSEEEEEECSCBSSCC--------HHHHHTEEE---EEEEEEEE
T ss_pred CCccEEEECCchHHHH--------HHHHHHhcC---CCEEEEEE
Confidence 3699999999998765 567889999 78877754
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.29 E-value=8.4e-12 Score=90.14 Aligned_cols=92 Identities=16% Similarity=0.228 Sum_probs=75.7
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccC-C--CccEEEecc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFI-P--PSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~-~--~~D~v~~~~ 81 (180)
+.++.+|||+|||+|.++..+++. ..+++++|+++ +++.+++ ..++++...|+.+.. + .||+|++.
T Consensus 89 ~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~- 165 (248)
T 2yvl_A 89 LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFVD- 165 (248)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEEC-
T ss_pred CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEEEC-
Confidence 467889999999999999999988 77899999965 8777764 268999999997644 3 59999983
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
.+++. .+++++.++|+| ||.+++...
T Consensus 166 ----~~~~~--~~l~~~~~~L~~---gG~l~~~~~ 191 (248)
T 2yvl_A 166 ----VREPW--HYLEKVHKSLME---GAPVGFLLP 191 (248)
T ss_dssp ----SSCGG--GGHHHHHHHBCT---TCEEEEEES
T ss_pred ----CcCHH--HHHHHHHHHcCC---CCEEEEEeC
Confidence 34555 679999999999 899998764
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.29 E-value=3.1e-12 Score=96.54 Aligned_cols=98 Identities=15% Similarity=0.161 Sum_probs=74.9
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----------CCCeeEEecCCccc-----CCCccEE
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----------TDNLKYIEGDMFQF-----IPPSDAF 77 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----------~~~~~~~~~d~~~~-----~~~~D~v 77 (180)
+.+.+|||||||+|..+..+++..+..+++++|+++ +++.+++ ..+++++++|..+. ...||+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 567899999999999999999887778999999966 8777764 25899999998542 2369999
Q ss_pred Eecccc--ccCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 78 FFKTVF--HFFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 78 ~~~~~l--~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
++.... +...+.....++++++++|+| ||.+++.
T Consensus 199 i~d~~~p~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~ 234 (334)
T 1xj5_A 199 IVDSSDPIGPAKELFEKPFFQSVARALRP---GGVVCTQ 234 (334)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEE---EEEEEEE
T ss_pred EECCCCccCcchhhhHHHHHHHHHHhcCC---CcEEEEe
Confidence 986542 111111134889999999999 7777664
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.29 E-value=4e-11 Score=91.93 Aligned_cols=96 Identities=9% Similarity=0.058 Sum_probs=76.5
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcccCC-----CccEEEeccc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQFIP-----PSDAFFFKTV 82 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~~~-----~~D~v~~~~~ 82 (180)
++.+|||+| |+|.++..++...+..+++++|+++ +++.+++ ..+++++++|+.+.++ .||+|+++..
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p 250 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPP 250 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCC
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCC
Confidence 468999999 9999999999887778999999965 8888875 2389999999976332 5999999876
Q ss_pred cccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 83 FHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 83 l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
++... ...+++++.++|+| ||.+++....
T Consensus 251 ~~~~~---~~~~l~~~~~~Lkp---gG~~~~~~~~ 279 (373)
T 2qm3_A 251 ETLEA---IRAFVGRGIATLKG---PRCAGYFGIT 279 (373)
T ss_dssp SSHHH---HHHHHHHHHHTBCS---TTCEEEEEEC
T ss_pred CchHH---HHHHHHHHHHHccc---CCeEEEEEEe
Confidence 55432 35889999999999 8866555543
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.28 E-value=1e-11 Score=87.33 Aligned_cols=96 Identities=13% Similarity=0.217 Sum_probs=72.9
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCccc----CCCccEEEecccc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQF----IPPSDAFFFKTVF 83 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~----~~~~D~v~~~~~l 83 (180)
++.+|||+|||+|.++..++... ..+++++|+++ +++.+++ ..++++.++|+.+. ...||+|++...+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~-~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~ 132 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRY-AAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 132 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcC-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence 56899999999999999877774 34899999966 8888874 24899999998652 2369999998774
Q ss_pred ccCChHHHHHHHHHHHH--hhccCCCCcEEEEEEee
Q 030291 84 HFFDDEDCLKLLKKCRE--AIASNGERGKVLIIDIV 117 (180)
Q Consensus 84 ~~~~~~~~~~~l~~~~~--~L~p~~~~G~~~~~~~~ 117 (180)
+ ..... .+++.+.+ +|+| ||.+++....
T Consensus 133 ~-~~~~~--~~l~~l~~~~~L~p---gG~l~i~~~~ 162 (202)
T 2fpo_A 133 R-RGLLE--ETINLLEDNGWLAD---EALIYVESEV 162 (202)
T ss_dssp S-TTTHH--HHHHHHHHTTCEEE---EEEEEEEEEG
T ss_pred C-CCcHH--HHHHHHHhcCccCC---CcEEEEEECC
Confidence 4 33333 67888876 4999 7777766543
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.1e-12 Score=92.19 Aligned_cols=97 Identities=13% Similarity=0.192 Sum_probs=76.0
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCC-CCeEEEeeCch-hhccCCC-------CCCeeEEecCCccc-------------
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFP-GIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQF------------- 70 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~------------- 70 (180)
..++.+|||||||+|..+..+++..+ ..+++++|+++ +++.+++ ..++++.++|..+.
T Consensus 58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 137 (239)
T 2hnk_A 58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSW 137 (239)
T ss_dssp HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGG
T ss_pred hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccc
Confidence 45678999999999999999999976 68999999965 7777764 24599999998541
Q ss_pred ------C-CCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 71 ------I-PPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 71 ------~-~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
. ..||+|++..... ....+++++.++|+| ||.+++.+..
T Consensus 138 ~~~f~~~~~~fD~I~~~~~~~-----~~~~~l~~~~~~L~p---gG~lv~~~~~ 183 (239)
T 2hnk_A 138 ASDFAFGPSSIDLFFLDADKE-----NYPNYYPLILKLLKP---GGLLIADNVL 183 (239)
T ss_dssp GTTTCCSTTCEEEEEECSCGG-----GHHHHHHHHHHHEEE---EEEEEEECSS
T ss_pred cccccCCCCCcCEEEEeCCHH-----HHHHHHHHHHHHcCC---CeEEEEEccc
Confidence 1 5699999875432 233789999999999 7877775543
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=4.7e-12 Score=93.62 Aligned_cols=98 Identities=13% Similarity=0.168 Sum_probs=75.5
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----------CCCeeEEecCCccc----CCCccEEE
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----------TDNLKYIEGDMFQF----IPPSDAFF 78 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----------~~~~~~~~~d~~~~----~~~~D~v~ 78 (180)
+++.+|||||||+|..+..+++..+..+++++|+++ +++.+++ .+++++..+|..+. ...||+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 467899999999999999999887778999999965 7776653 36899999998652 34699999
Q ss_pred eccccccCChHHH--HHHHHHHHHhhccCCCCcEEEEE
Q 030291 79 FKTVFHFFDDEDC--LKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 79 ~~~~l~~~~~~~~--~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
+....+..+.... .++++.++++|+| ||.+++.
T Consensus 157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~p---gG~lv~~ 191 (283)
T 2i7c_A 157 VDSSDPIGPAETLFNQNFYEKIYNALKP---NGYCVAQ 191 (283)
T ss_dssp EECCCTTTGGGGGSSHHHHHHHHHHEEE---EEEEEEE
T ss_pred EcCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 9654333222221 4889999999999 7777664
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=5.1e-12 Score=93.33 Aligned_cols=97 Identities=13% Similarity=0.178 Sum_probs=72.2
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----------------CCCeeEEecCCccc---CCC
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----------------TDNLKYIEGDMFQF---IPP 73 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----------------~~~~~~~~~d~~~~---~~~ 73 (180)
+.+.+|||||||+|.++..+++. +..+++++|+++ +++.+++ .++++++.+|..+. ...
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 152 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 152 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence 46789999999999999999988 778999999965 7665542 35789999998542 346
Q ss_pred ccEEEeccccccCChHH--HHHHHHHHHHhhccCCCCcEEEEE
Q 030291 74 SDAFFFKTVFHFFDDED--CLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 74 ~D~v~~~~~l~~~~~~~--~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
||+|++....+..+... ..+++++++++|+| ||.+++.
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~p---gG~lv~~ 192 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNN---PGIYVTQ 192 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEE---EEEEEEE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 99999865532222111 24789999999999 7777664
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=4.2e-12 Score=90.64 Aligned_cols=93 Identities=16% Similarity=0.172 Sum_probs=74.2
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCch-hhccCCC-----------CCCeeEEecCCccc---CCCccE
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPH-AVTDMPQ-----------TDNLKYIEGDMFQF---IPPSDA 76 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~-~~~~a~~-----------~~~~~~~~~d~~~~---~~~~D~ 76 (180)
.+++.+|||+|||+|..+..+++.. +..+++++|+++ +++.+++ ..++++.++|.... ...||+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 4678899999999999999998874 557999999965 8777763 24799999998542 236999
Q ss_pred EEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 77 FFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 77 v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
|++...++++ ++++.+.|+| ||.+++...
T Consensus 155 i~~~~~~~~~--------~~~~~~~Lkp---gG~lv~~~~ 183 (226)
T 1i1n_A 155 IHVGAAAPVV--------PQALIDQLKP---GGRLILPVG 183 (226)
T ss_dssp EEECSBBSSC--------CHHHHHTEEE---EEEEEEEES
T ss_pred EEECCchHHH--------HHHHHHhcCC---CcEEEEEEe
Confidence 9999888755 4568899999 888887653
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.7e-11 Score=91.44 Aligned_cols=96 Identities=13% Similarity=0.133 Sum_probs=69.4
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeC----ch-hhccCCC----CCCeeEEec-CCcc-cCCCccEEEecc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDL----PH-AVTDMPQ----TDNLKYIEG-DMFQ-FIPPSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~----~~-~~~~a~~----~~~~~~~~~-d~~~-~~~~~D~v~~~~ 81 (180)
++++.+|||||||+|.++..+++. .+++++|+ +. +++.... ..++++.++ |+.. +...||+|++..
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd~ 156 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDI 156 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEECC
Confidence 566789999999999999998887 36999998 33 4433321 257899998 8865 334699999977
Q ss_pred ccc---cCChHH-HHHHHHHHHHhhccCCCCcEEEEE
Q 030291 82 VFH---FFDDED-CLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 82 ~l~---~~~~~~-~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
+++ +..+.. ...+|..+.++|+| ||.+++.
T Consensus 157 ~~~~g~~~~d~~~~l~~L~~~~~~Lkp---GG~~v~k 190 (305)
T 2p41_A 157 GESSPNPTVEAGRTLRVLNLVENWLSN---NTQFCVK 190 (305)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHCCT---TCEEEEE
T ss_pred ccccCcchhhHHHHHHHHHHHHHHhCC---CCEEEEE
Confidence 653 222222 12578999999999 8877663
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-11 Score=90.50 Aligned_cols=89 Identities=10% Similarity=0.098 Sum_probs=72.6
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----------CCCeeEEecCCcccCCCccEEEeccc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----------TDNLKYIEGDMFQFIPPSDAFFFKTV 82 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----------~~~~~~~~~d~~~~~~~~D~v~~~~~ 82 (180)
+.+.+|||||||+|..+..+++. + .+++++|+++ +++.+++ .+++++..+|..+....||+|++..
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d~- 147 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCLQ- 147 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEESS-
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEECC-
Confidence 45689999999999999999888 6 8999999965 8888875 2478999999865446799999863
Q ss_pred cccCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 83 FHFFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 83 l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
.++. .+++.++++|+| ||.+++.
T Consensus 148 ----~dp~--~~~~~~~~~L~p---gG~lv~~ 170 (262)
T 2cmg_A 148 ----EPDI--HRIDGLKRMLKE---DGVFISV 170 (262)
T ss_dssp ----CCCH--HHHHHHHTTEEE---EEEEEEE
T ss_pred ----CChH--HHHHHHHHhcCC---CcEEEEE
Confidence 3444 589999999999 7777664
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.3e-11 Score=90.74 Aligned_cols=97 Identities=19% Similarity=0.138 Sum_probs=78.5
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCccc--CCCccEEEecccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQF--IPPSDAFFFKTVF 83 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~--~~~~D~v~~~~~l 83 (180)
+.++.+|||+|||+|.++..+++..+..+++++|+++ +++.+++ ..++.+.++|+.+. ...||+|++....
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYVH 196 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCCS
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCcc
Confidence 4577899999999999999999997777999999965 8888764 35789999999664 2369999987653
Q ss_pred ccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeee
Q 030291 84 HFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVI 118 (180)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~ 118 (180)
+.. +++.++.+.|+| ||.++++....
T Consensus 197 ----~~~--~~l~~~~~~Lkp---gG~l~~s~~~~ 222 (272)
T 3a27_A 197 ----KTH--KFLDKTFEFLKD---RGVIHYHETVA 222 (272)
T ss_dssp ----SGG--GGHHHHHHHEEE---EEEEEEEEEEE
T ss_pred ----cHH--HHHHHHHHHcCC---CCEEEEEEcCc
Confidence 233 679999999999 88888876654
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=8.3e-12 Score=93.58 Aligned_cols=99 Identities=13% Similarity=0.118 Sum_probs=76.7
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----------CCCeeEEecCCccc----CCCccEE
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----------TDNLKYIEGDMFQF----IPPSDAF 77 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----------~~~~~~~~~d~~~~----~~~~D~v 77 (180)
+.+.+|||||||+|..+..+++..+..+++++|+++ +++.+++ ..+++++.+|..+. ...||+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 467899999999999999999887788999999965 7776653 35799999998652 3469999
Q ss_pred Eecccccc---CChHH--HHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 78 FFKTVFHF---FDDED--CLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 78 ~~~~~l~~---~~~~~--~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
++....+. -+... ..+++++++++|+| ||.+++..
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~~ 195 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNP---GGVMGMQT 195 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEE---EEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCC---CcEEEEEc
Confidence 99766543 11111 24889999999999 78777754
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-11 Score=89.30 Aligned_cols=95 Identities=18% Similarity=0.174 Sum_probs=74.3
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCC-CCeEEEeeCch-hhccCCC-------CCCeeEEecCCccc----------CCC
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFP-GIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQF----------IPP 73 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~----------~~~ 73 (180)
..++.+|||||||+|..+..+++..| +.+++++|+++ +++.+++ ..++++.++|..+. ...
T Consensus 68 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 147 (237)
T 3c3y_A 68 LVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGS 147 (237)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTC
T ss_pred hhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCC
Confidence 34678999999999999999999976 78999999965 7777764 24799999998641 246
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 74 SDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 74 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
||+|++... ......+++++.+.|+| ||.+++.+
T Consensus 148 fD~I~~d~~-----~~~~~~~l~~~~~~L~p---GG~lv~d~ 181 (237)
T 3c3y_A 148 YDFGFVDAD-----KPNYIKYHERLMKLVKV---GGIVAYDN 181 (237)
T ss_dssp EEEEEECSC-----GGGHHHHHHHHHHHEEE---EEEEEEEC
T ss_pred cCEEEECCc-----hHHHHHHHHHHHHhcCC---CeEEEEec
Confidence 999998643 22344889999999999 67666544
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.27 E-value=4.1e-12 Score=91.28 Aligned_cols=96 Identities=14% Similarity=0.194 Sum_probs=75.1
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCC-CCeEEEeeCch-hhccCCC-------CCCeeEEecCCcc---cC------CCcc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFP-GIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQ---FI------PPSD 75 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~---~~------~~~D 75 (180)
.++.+|||||||+|..+..+++..+ +.+++++|+++ +++.+++ ..++++.++|..+ .. +.||
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD 150 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD 150 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence 4678999999999999999999876 67999999965 7777764 2479999999743 11 5699
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 76 AFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 76 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
+|++.... .....+++++.++|+| ||.+++.+..
T Consensus 151 ~V~~d~~~-----~~~~~~l~~~~~~Lkp---gG~lv~~~~~ 184 (232)
T 3cbg_A 151 LIFIDADK-----RNYPRYYEIGLNLLRR---GGLMVIDNVL 184 (232)
T ss_dssp EEEECSCG-----GGHHHHHHHHHHTEEE---EEEEEEECTT
T ss_pred EEEECCCH-----HHHHHHHHHHHHHcCC---CeEEEEeCCC
Confidence 99986542 2334789999999999 7777775543
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.27 E-value=5.2e-12 Score=94.60 Aligned_cols=98 Identities=17% Similarity=0.205 Sum_probs=71.4
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----------CCCeeEEecCCccc----CCCccEEE
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----------TDNLKYIEGDMFQF----IPPSDAFF 78 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----------~~~~~~~~~d~~~~----~~~~D~v~ 78 (180)
+.+.+|||||||+|..+..+++..+..+++++|+++ +++.+++ .++++++.+|..+. ...||+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 457899999999999999999887788999999965 7776653 25799999998652 34699999
Q ss_pred eccccccCChHHH--HHHHHHHHHhhccCCCCcEEEEE
Q 030291 79 FKTVFHFFDDEDC--LKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 79 ~~~~l~~~~~~~~--~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
+...-+..+.... .+++++++++|+| ||.+++.
T Consensus 187 ~d~~~~~~~~~~l~t~~~l~~~~~~Lkp---gG~lv~~ 221 (314)
T 2b2c_A 187 TDSSDPVGPAESLFGQSYYELLRDALKE---DGILSSQ 221 (314)
T ss_dssp ECCC-------------HHHHHHHHEEE---EEEEEEE
T ss_pred EcCCCCCCcchhhhHHHHHHHHHhhcCC---CeEEEEE
Confidence 8654322122211 5889999999999 6766664
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=5.3e-12 Score=90.24 Aligned_cols=97 Identities=12% Similarity=0.203 Sum_probs=75.7
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCC-CCeEEEeeCch-hhccCCC-------CCCeeEEecCCccc---C------CCc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFP-GIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQF---I------PPS 74 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~---~------~~~ 74 (180)
..++.+|||||||+|..+..+++..+ ..+++++|+++ +++.+++ ..++++.++|..+. . ..|
T Consensus 67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~ 146 (229)
T 2avd_A 67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 146 (229)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 35678999999999999999998876 78999999955 7777764 26899999998542 1 569
Q ss_pred cEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 75 DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 75 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
|+|++... ......+++++.++|+| ||.+++.+..
T Consensus 147 D~v~~d~~-----~~~~~~~l~~~~~~L~p---gG~lv~~~~~ 181 (229)
T 2avd_A 147 DVAVVDAD-----KENCSAYYERCLQLLRP---GGILAVLRVL 181 (229)
T ss_dssp EEEEECSC-----STTHHHHHHHHHHHEEE---EEEEEEECCS
T ss_pred cEEEECCC-----HHHHHHHHHHHHHHcCC---CeEEEEECCC
Confidence 99998654 12233789999999999 7777775543
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.5e-11 Score=94.00 Aligned_cols=95 Identities=17% Similarity=0.170 Sum_probs=71.2
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCC-------CCCeeEEecCCcc-cCC-CccEEEecccccc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ-------TDNLKYIEGDMFQ-FIP-PSDAFFFKTVFHF 85 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~-------~~~~~~~~~d~~~-~~~-~~D~v~~~~~l~~ 85 (180)
++++|||||||+|.++...++.. -.+++++|.++++..|++ ..+|+++++++.+ .+| .+|+|++..+-+.
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~aG-A~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~ 161 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQAG-ARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYG 161 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTT
T ss_pred CCCEEEEeCCCccHHHHHHHHhC-CCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeeccccc
Confidence 57789999999999998777764 347999999877776664 5789999999965 344 6999998554333
Q ss_pred CChH-HHHHHHHHHHHhhccCCCCcEEEE
Q 030291 86 FDDE-DCLKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 86 ~~~~-~~~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
+..+ ....++....+.|+| ||.++-
T Consensus 162 l~~e~~l~~~l~a~~r~Lkp---~G~~iP 187 (376)
T 4hc4_A 162 LLHESMLSSVLHARTKWLKE---GGLLLP 187 (376)
T ss_dssp BTTTCSHHHHHHHHHHHEEE---EEEEES
T ss_pred ccccchhhhHHHHHHhhCCC---CceECC
Confidence 3332 344778888899999 666654
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.26 E-value=1e-11 Score=94.62 Aligned_cols=100 Identities=14% Similarity=0.176 Sum_probs=77.5
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCch-hhccCCC------CCCeeEEecCCccc---CCCccEEEecc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQF---IPPSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~---~~~~D~v~~~~ 81 (180)
++++.+|||+|||+|.++..++... +..+++++|+++ +++.+++ ..++++.++|+.+. .+.||+|+++-
T Consensus 201 ~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~np 280 (354)
T 3tma_A 201 ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFPEVDRILANP 280 (354)
T ss_dssp CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSEEEECC
T ss_pred CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccCCCCEEEECC
Confidence 5678899999999999999999986 778999999965 8888874 13799999999662 23589999965
Q ss_pred ccccCCh--H----HHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 82 VFHFFDD--E----DCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 82 ~l~~~~~--~----~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
....-.. . ....+++++.++|+| ||.+++..
T Consensus 281 Pyg~r~~~~~~~~~~~~~~~~~~~~~Lkp---gG~l~i~t 317 (354)
T 3tma_A 281 PHGLRLGRKEGLFHLYWDFLRGALALLPP---GGRVALLT 317 (354)
T ss_dssp CSCC----CHHHHHHHHHHHHHHHHTSCT---TCEEEEEE
T ss_pred CCcCccCCcccHHHHHHHHHHHHHHhcCC---CcEEEEEe
Confidence 4332111 1 124789999999999 89988864
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=6.8e-12 Score=94.30 Aligned_cols=98 Identities=13% Similarity=0.167 Sum_probs=73.9
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----------CCCeeEEecCCccc----CCCccEEE
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----------TDNLKYIEGDMFQF----IPPSDAFF 78 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----------~~~~~~~~~d~~~~----~~~~D~v~ 78 (180)
+++.+|||||||+|..+..+++..+..+++++|+++ +++.+++ ..++++.++|..+. ...||+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 456899999999999999999877788999999965 7776653 35799999998552 24699999
Q ss_pred eccccccCChHH--HHHHHHHHHHhhccCCCCcEEEEE
Q 030291 79 FKTVFHFFDDED--CLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 79 ~~~~l~~~~~~~--~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
+...-..-+... ..+++++++++|+| ||.+++.
T Consensus 195 ~d~~~p~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~ 229 (321)
T 2pt6_A 195 VDSSDPIGPAETLFNQNFYEKIYNALKP---NGYCVAQ 229 (321)
T ss_dssp EECCCSSSGGGGGSSHHHHHHHHHHEEE---EEEEEEE
T ss_pred ECCcCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 865321111111 14889999999999 7777664
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=6.3e-12 Score=93.79 Aligned_cols=99 Identities=15% Similarity=0.159 Sum_probs=73.3
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----------CCCeeEEecCCccc----CCCccEEE
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----------TDNLKYIEGDMFQF----IPPSDAFF 78 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----------~~~~~~~~~d~~~~----~~~~D~v~ 78 (180)
+++.+|||||||+|..+..+++..+..+++++|+++ +++.+++ ..+++++.+|..+. ...||+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 467899999999999999999887778999999965 7776653 36899999998552 24699999
Q ss_pred eccccccCChH--HHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 79 FKTVFHFFDDE--DCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 79 ~~~~l~~~~~~--~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
+....+..+.. ...+++++++++|+| ||.+++..
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~~ 209 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALKE---DGVLCCQG 209 (304)
T ss_dssp EECC-----------CHHHHHHHHHEEE---EEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccCC---CeEEEEec
Confidence 86543322211 123789999999999 77776654
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.24 E-value=7.1e-12 Score=92.26 Aligned_cols=98 Identities=15% Similarity=0.117 Sum_probs=74.1
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----------CCCeeEEecCCccc----CCCccEEE
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----------TDNLKYIEGDMFQF----IPPSDAFF 78 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----------~~~~~~~~~d~~~~----~~~~D~v~ 78 (180)
+.+.+|||||||+|.++..+++..+..+++++|+++ +++.+++ .++++++.+|..+. ...||+|+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 457899999999999999998876678999999965 7776653 36899999998652 23699999
Q ss_pred eccccccCChH--HHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 79 FKTVFHFFDDE--DCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 79 ~~~~l~~~~~~--~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
+....+..+.. ...+++++++++|+| ||.+++.
T Consensus 154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~p---gG~lv~~ 188 (275)
T 1iy9_A 154 VDSTEPVGPAVNLFTKGFYAGIAKALKE---DGIFVAQ 188 (275)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEE---EEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 96544322211 013789999999999 6766664
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.23 E-value=3e-12 Score=94.78 Aligned_cols=77 Identities=18% Similarity=0.340 Sum_probs=61.2
Q ss_pred ccccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcc-cCCC
Q 030291 3 TLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQ-FIPP 73 (180)
Q Consensus 3 ~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~-~~~~ 73 (180)
+.+++.+. ..++.+|||||||+|.++..+++. +.+++++|+++ +++.+++ ..+++++++|+.+ +.+.
T Consensus 18 ~~i~~~~~--~~~~~~VLDiG~G~G~lt~~L~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~~ 93 (285)
T 1zq9_A 18 NSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF 93 (285)
T ss_dssp HHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC
T ss_pred HHHHHhcC--CCCCCEEEEEcCcccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccchh
Confidence 34555555 677889999999999999999998 45899999965 8777654 1579999999976 5568
Q ss_pred ccEEEecccc
Q 030291 74 SDAFFFKTVF 83 (180)
Q Consensus 74 ~D~v~~~~~l 83 (180)
||+|+++...
T Consensus 94 fD~vv~nlpy 103 (285)
T 1zq9_A 94 FDTCVANLPY 103 (285)
T ss_dssp CSEEEEECCG
T ss_pred hcEEEEecCc
Confidence 9999996554
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.22 E-value=2.3e-11 Score=85.27 Aligned_cols=88 Identities=18% Similarity=0.232 Sum_probs=65.2
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-CCCeeEEecCCcccCCCccEEEeccccccCChHHH
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-TDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDDEDC 91 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-~~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~~~~ 91 (180)
.++.+|||+|||+|.++..+++. +..+++++|+++ +++.+++ ..++++.++|+.+....||+|+++..++++.+...
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~~~~~~ 128 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYDTWIMNPPFGSVVKHSD 128 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCCCCEEEEEECCCC-------C
T ss_pred CCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHCCCCeeEEEECCCchhccCchh
Confidence 46789999999999999999887 344799999965 8888875 23899999999664357999999999998876433
Q ss_pred HHHHHHHHHhh
Q 030291 92 LKLLKKCREAI 102 (180)
Q Consensus 92 ~~~l~~~~~~L 102 (180)
..+++++.+.+
T Consensus 129 ~~~l~~~~~~~ 139 (200)
T 1ne2_A 129 RAFIDKAFETS 139 (200)
T ss_dssp HHHHHHHHHHE
T ss_pred HHHHHHHHHhc
Confidence 46677777775
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.8e-10 Score=85.06 Aligned_cols=92 Identities=15% Similarity=0.118 Sum_probs=66.1
Q ss_pred ccCCCeEEEeCCcc------cHHHHHHHHHCC-CCeEEEeeCchhhccCCCCCCeeE-EecCCccc-C-CCccEEEeccc
Q 030291 13 FQGLRSMVDVGGGT------GAFARIISEAFP-GIKCTVLDLPHAVTDMPQTDNLKY-IEGDMFQF-I-PPSDAFFFKTV 82 (180)
Q Consensus 13 ~~~~~~iLdiG~G~------G~~~~~l~~~~~-~~~~~~~D~~~~~~~a~~~~~~~~-~~~d~~~~-~-~~~D~v~~~~~ 82 (180)
++++.+|||+|||+ |. ..+++..+ ..+++++|+++.+ .++++ +++|+.+. . ..||+|+++..
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~v------~~v~~~i~gD~~~~~~~~~fD~Vvsn~~ 132 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFV------SDADSTLIGDCATVHTANKWDLIISDMY 132 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCB------CSSSEEEESCGGGCCCSSCEEEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCCC------CCCEEEEECccccCCccCcccEEEEcCC
Confidence 67788999999944 66 44555655 6899999997652 36888 99999662 2 36999999754
Q ss_pred ccc--------CC-hHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 83 FHF--------FD-DEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 83 l~~--------~~-~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
.+. .. ......+++++.++|+| ||.+++..
T Consensus 133 ~~~~g~~~~d~~~~~~l~~~~l~~a~r~Lkp---GG~~v~~~ 171 (290)
T 2xyq_A 133 DPRTKHVTKENDSKEGFFTYLCGFIKQKLAL---GGSIAVKI 171 (290)
T ss_dssp CCC---CCSCCCCCCTHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred ccccccccccccchHHHHHHHHHHHHHhcCC---CcEEEEEE
Confidence 221 11 12234789999999999 88888754
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.21 E-value=1.6e-10 Score=81.28 Aligned_cols=88 Identities=18% Similarity=0.168 Sum_probs=68.5
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCcccCCCccEEEeccccccCC
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQFIPPSDAFFFKTVFHFFD 87 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~ 87 (180)
.++.+|||+|||+|.++..+++.. ..+++++|+++ +++.+++ ..++++.++|+.+..+.||+|+++-.++...
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~~ 126 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGSQR 126 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSSSS
T ss_pred CCcCEEEEeeCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcCCCCCEEEEcCCCcccc
Confidence 457899999999999999998874 34799999965 8877764 1279999999966444799999998877765
Q ss_pred hHHHHHHHHHHHHhh
Q 030291 88 DEDCLKLLKKCREAI 102 (180)
Q Consensus 88 ~~~~~~~l~~~~~~L 102 (180)
......+++++.+.+
T Consensus 127 ~~~~~~~l~~~~~~l 141 (207)
T 1wy7_A 127 KHADRPFLLKAFEIS 141 (207)
T ss_dssp TTTTHHHHHHHHHHC
T ss_pred CCchHHHHHHHHHhc
Confidence 433346788877776
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.20 E-value=6e-11 Score=87.25 Aligned_cols=105 Identities=9% Similarity=0.088 Sum_probs=77.1
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCC-CeEEEeeCch-hhccCCC------CCCeeEEecCCccc-------CCCccEE
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPG-IKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQF-------IPPSDAF 77 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~-~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~-------~~~~D~v 77 (180)
..++.+|||+|||+|..+..+++..++ .+++++|+++ +++.+++ ..++++.++|..+. ...||+|
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence 457789999999999999999998765 7999999965 7777654 34899999998542 3469999
Q ss_pred Eec------cccccCC---h-------HHHHHHHHHHHHhhccCCCCcEEEEEEeeeCC
Q 030291 78 FFK------TVFHFFD---D-------EDCLKLLKKCREAIASNGERGKVLIIDIVIDE 120 (180)
Q Consensus 78 ~~~------~~l~~~~---~-------~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~ 120 (180)
++. +++++-+ . ....++++++.++|+| ||.++++......
T Consensus 161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~stcs~~~ 216 (274)
T 3ajd_A 161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKK---DGELVYSTCSMEV 216 (274)
T ss_dssp EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEE---EEEEEEEESCCCT
T ss_pred EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCC---CCEEEEEECCCCh
Confidence 985 2222100 0 1234789999999999 8888887765433
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=2e-11 Score=90.80 Aligned_cols=98 Identities=10% Similarity=0.132 Sum_probs=71.8
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----------CCCeeEEecCCccc----CCCccEEE
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----------TDNLKYIEGDMFQF----IPPSDAFF 78 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----------~~~~~~~~~d~~~~----~~~~D~v~ 78 (180)
+.+.+|||||||+|..+..+++..+..+++++|+++ +++.+++ ..++++.++|..+. ...||+|+
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 456899999999999999999887778999999965 7776653 36899999997542 23699999
Q ss_pred eccccccCChH---HHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 79 FKTVFHFFDDE---DCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 79 ~~~~l~~~~~~---~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
+...-+..... ...+++++++++|+| ||.+++.
T Consensus 169 ~d~~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~ 204 (296)
T 1inl_A 169 IDSTDPTAGQGGHLFTEEFYQACYDALKE---DGVFSAE 204 (296)
T ss_dssp EEC----------CCSHHHHHHHHHHEEE---EEEEEEE
T ss_pred EcCCCcccCchhhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 85432112111 124789999999999 7777664
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.5e-10 Score=88.68 Aligned_cols=120 Identities=14% Similarity=0.126 Sum_probs=86.6
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcc-cC--CCccEEEeccc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQ-FI--PPSDAFFFKTV 82 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~-~~--~~~D~v~~~~~ 82 (180)
.++.+|||+|||+|.++..++...+..+++++|+++ +++.+++ ..++++.++|+.+ +. ..||+|+++-.
T Consensus 216 ~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~npP 295 (373)
T 3tm4_A 216 LDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLP 295 (373)
T ss_dssp CCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEECC
T ss_pred CCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECCC
Confidence 567899999999999999999987656899999966 8888875 2489999999966 22 36999999654
Q ss_pred cccCC------hHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHH
Q 030291 83 FHFFD------DEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLF 156 (180)
Q Consensus 83 l~~~~------~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 156 (180)
+..-. ......+++.++++| + |+.+++.. +.+.+.+.+
T Consensus 296 yg~r~~~~~~~~~ly~~~~~~l~r~l-~---g~~~~i~~--------------------------------~~~~~~~~~ 339 (373)
T 3tm4_A 296 YGLKIGKKSMIPDLYMKFFNELAKVL-E---KRGVFITT--------------------------------EKKAIEEAI 339 (373)
T ss_dssp CC------CCHHHHHHHHHHHHHHHE-E---EEEEEEES--------------------------------CHHHHHHHH
T ss_pred CCcccCcchhHHHHHHHHHHHHHHHc-C---CeEEEEEC--------------------------------CHHHHHHHH
Confidence 33211 111247888999988 5 34444421 345677788
Q ss_pred HHcCCeEEEEeec
Q 030291 157 VNAGFTHYKIAPI 169 (180)
Q Consensus 157 ~~aGf~~~~~~~~ 169 (180)
++.||+..+....
T Consensus 340 ~~~G~~~~~~~~~ 352 (373)
T 3tm4_A 340 AENGFEIIHHRVI 352 (373)
T ss_dssp HHTTEEEEEEEEE
T ss_pred HHcCCEEEEEEEE
Confidence 8899988766544
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.17 E-value=3.3e-10 Score=85.48 Aligned_cols=94 Identities=19% Similarity=0.333 Sum_probs=71.8
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CC--CeeEEecCCccc-------CCCccEEE
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TD--NLKYIEGDMFQF-------IPPSDAFF 78 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~--~~~~~~~d~~~~-------~~~~D~v~ 78 (180)
++.+|||+|||+|.++..+++. +.+++++|+++ +++.+++ .. +++++++|+.+. ...||+|+
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~--ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCcEEEcccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 5679999999999999999886 45899999966 8888874 12 599999998652 24699999
Q ss_pred eccc----------cccCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 79 FKTV----------FHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 79 ~~~~----------l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
+.-. +++. .....+++++.++|+| ||.+++..
T Consensus 231 ~dPP~~~~~~~~~~~~~~--~~~~~ll~~~~~~Lkp---gG~lli~~ 272 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQLF--DHLPLMLDICREILSP---KALGLVLT 272 (332)
T ss_dssp ECCCSEEECTTCCEEEHH--HHHHHHHHHHHHTBCT---TCCEEEEE
T ss_pred ECCccccCCchHHHHHHH--HHHHHHHHHHHHhcCc---CcEEEEEE
Confidence 8432 1112 2234789999999999 88877654
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.5e-10 Score=89.87 Aligned_cols=97 Identities=12% Similarity=0.091 Sum_probs=74.1
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCch-hhccCCCCCCeeEEecCCcccC--CCccEEEeccccc-----
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQFI--PPSDAFFFKTVFH----- 84 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~~--~~~D~v~~~~~l~----- 84 (180)
..+.+|||+|||+|.++..+++.. +..+++++|+++ +++.| .++++.++|+.+.. +.||+|+++=...
T Consensus 38 ~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---~~~~~~~~D~~~~~~~~~fD~Ii~NPPy~~~~~~ 114 (421)
T 2ih2_A 38 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLILGNPPYGIVGEA 114 (421)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEEECCCCCCBSCT
T ss_pred CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---CCCcEEeCChhhcCccCCCCEEEECcCccCcccc
Confidence 456799999999999999999875 578999999965 77776 67999999997643 3699999952211
Q ss_pred -----cCChHHH-----------------HHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 85 -----FFDDEDC-----------------LKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 85 -----~~~~~~~-----------------~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
|+.+... ..+++++.+.|+| ||.+++..+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~---~G~~~~i~p 165 (421)
T 2ih2_A 115 SKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKP---GGVLVFVVP 165 (421)
T ss_dssp TTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred cccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCC---CCEEEEEEC
Confidence 1223221 2679999999999 888888664
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.2e-10 Score=91.32 Aligned_cols=104 Identities=14% Similarity=0.143 Sum_probs=80.1
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCC-CeEEEeeCch-hhccCCC------CCCeeEEecCCccc---C--CCccEEEe
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPG-IKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQF---I--PPSDAFFF 79 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~-~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~---~--~~~D~v~~ 79 (180)
..++.+|||+|||+|..+..+++..++ .+++++|+++ ++..+++ ..++++.++|..+. . ..||+|++
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~ 336 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLL 336 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEE
Confidence 466789999999999999999998766 7999999965 7766653 34799999998653 2 35999996
Q ss_pred ------ccccccCChHH--------------HHHHHHHHHHhhccCCCCcEEEEEEeeeC
Q 030291 80 ------KTVFHFFDDED--------------CLKLLKKCREAIASNGERGKVLIIDIVID 119 (180)
Q Consensus 80 ------~~~l~~~~~~~--------------~~~~l~~~~~~L~p~~~~G~~~~~~~~~~ 119 (180)
.+++++.++.. +..+|+++.++|+| ||.++++++...
T Consensus 337 D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~lvy~tcs~~ 393 (450)
T 2yxl_A 337 DAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKP---GGRLLYTTCSIF 393 (450)
T ss_dssp ECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEE---EEEEEEEESCCC
T ss_pred cCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCC
Confidence 34555544431 14789999999999 888888776543
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=6.4e-10 Score=81.69 Aligned_cols=119 Identities=12% Similarity=0.080 Sum_probs=87.7
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccC--CCccEEEeccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFI--PPSDAFFFKTV 82 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~--~~~D~v~~~~~ 82 (180)
.+++.+|||+|||+|.++..+++.. .++++++|+++ +++.+++ ..++++.++|..+.. ..||.|+++..
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~g-~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p 201 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred cCCCCEEEEecCcCcHHHHHHHHhc-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCC
Confidence 4678999999999999999988874 46899999955 7777764 567999999997643 35999997643
Q ss_pred cccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCe
Q 030291 83 FHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFT 162 (180)
Q Consensus 83 l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 162 (180)
+... .+|..+.+.|++ ||.+.+.+....... .....+.+.+..++.|++
T Consensus 202 ----~~~~--~~l~~a~~~lk~---gG~ih~~~~~~e~~~----------------------~~~~~e~i~~~~~~~g~~ 250 (278)
T 3k6r_A 202 ----VRTH--EFIPKALSIAKD---GAIIHYHNTVPEKLM----------------------PREPFETFKRITKEYGYD 250 (278)
T ss_dssp ----SSGG--GGHHHHHHHEEE---EEEEEEEEEEEGGGT----------------------TTTTHHHHHHHHHHTTCE
T ss_pred ----CcHH--HHHHHHHHHcCC---CCEEEEEeeeccccc----------------------chhHHHHHHHHHHHcCCc
Confidence 2223 678889999999 887766654332210 112346677888899987
Q ss_pred E
Q 030291 163 H 163 (180)
Q Consensus 163 ~ 163 (180)
+
T Consensus 251 v 251 (278)
T 3k6r_A 251 V 251 (278)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.11 E-value=2.5e-10 Score=89.04 Aligned_cols=104 Identities=13% Similarity=0.122 Sum_probs=79.4
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCccc---C--CCccEEEe--
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQF---I--PPSDAFFF-- 79 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~~---~--~~~D~v~~-- 79 (180)
..++.+|||+|||+|..+..+++..++.+++++|+++ ++..+++ ..++++.++|..+. . ..||+|++
T Consensus 244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 323 (429)
T 1sqg_A 244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 323 (429)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeC
Confidence 4567899999999999999999998778999999965 7776654 33578899998652 1 36999996
Q ss_pred ----ccccccCChHH--------------HHHHHHHHHHhhccCCCCcEEEEEEeeeC
Q 030291 80 ----KTVFHFFDDED--------------CLKLLKKCREAIASNGERGKVLIIDIVID 119 (180)
Q Consensus 80 ----~~~l~~~~~~~--------------~~~~l~~~~~~L~p~~~~G~~~~~~~~~~ 119 (180)
.+++++.++.. +.++++++.+.|+| ||.++++++...
T Consensus 324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~Lkp---GG~lvystcs~~ 378 (429)
T 1sqg_A 324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKT---GGTLVYATCSVL 378 (429)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEE---EEEEEEEESCCC
T ss_pred CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECCCC
Confidence 23455544421 24789999999999 888888775443
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=9.3e-11 Score=90.23 Aligned_cols=98 Identities=15% Similarity=0.166 Sum_probs=71.8
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CC-CeeEEecCCcccC-------CCccEE
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TD-NLKYIEGDMFQFI-------PPSDAF 77 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~-~~~~~~~d~~~~~-------~~~D~v 77 (180)
.++.+|||+|||+|.++..+++.. ..+++++|+++ +++.+++ .. ++++.++|+.+.. ..||+|
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I 289 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 289 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence 457899999999999999998863 23899999966 8888874 22 8999999986521 269999
Q ss_pred Eecccc-----ccCCh--HHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 78 FFKTVF-----HFFDD--EDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 78 ~~~~~l-----~~~~~--~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
++.-.. .+..+ ....++++.+.+.|+| ||.+++..
T Consensus 290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~p---gG~l~~~~ 331 (385)
T 2b78_A 290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSE---NGLIIAST 331 (385)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCC---CcEEEEEe
Confidence 984322 22222 2234678888999999 77776654
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.05 E-value=9.9e-11 Score=87.16 Aligned_cols=96 Identities=17% Similarity=0.320 Sum_probs=66.6
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcc-cCCCcc
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ-FIPPSD 75 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~-~~~~~D 75 (180)
.+++.+. ..++.+|||||||+|.++..+++. ..+++++|+++ +++.+++ ..++++.++|+.+ +.+.||
T Consensus 33 ~i~~~~~--~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~D 108 (299)
T 2h1r_A 33 KIIYAAK--IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPKFD 108 (299)
T ss_dssp HHHHHHC--CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCCCS
T ss_pred HHHHhcC--CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcccCC
Confidence 3444454 567889999999999999999887 56899999965 8777764 2589999999966 445799
Q ss_pred EEEeccccccCChHHHHHHH---------------HHHHHhhcc
Q 030291 76 AFFFKTVFHFFDDEDCLKLL---------------KKCREAIAS 104 (180)
Q Consensus 76 ~v~~~~~l~~~~~~~~~~~l---------------~~~~~~L~p 104 (180)
+|+++... ++..+....++ +...+++++
T Consensus 109 ~Vv~n~py-~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~ 151 (299)
T 2h1r_A 109 VCTANIPY-KISSPLIFKLISHRPLFKCAVLMFQKEFAERMLAN 151 (299)
T ss_dssp EEEEECCG-GGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCC
T ss_pred EEEEcCCc-ccccHHHHHHHhcCCccceeeehHHHHHHHHHhcC
Confidence 99986554 44444434444 345677777
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.05 E-value=2.9e-10 Score=86.22 Aligned_cols=99 Identities=10% Similarity=0.186 Sum_probs=77.4
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCC-----CeEEEeeCch-hhccCCC-----CCCeeEEecCCcccC--CCccEEEecc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPG-----IKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQFI--PPSDAFFFKT 81 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~-----~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~~~--~~~D~v~~~~ 81 (180)
++.+|||+|||+|.++..+++..+. .+++++|+++ ++..|+. ..++.+.++|.+... ..||+|+++-
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~NP 209 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISDL 209 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEEC
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEECC
Confidence 5679999999999999998887543 7899999965 7777654 236889999987643 3699999988
Q ss_pred ccccCChHHH----------------HHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 82 VFHFFDDEDC----------------LKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 82 ~l~~~~~~~~----------------~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
.+++++..+. ..++.++.+.|+| ||.+++..+
T Consensus 210 Pfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~---gG~~~~v~p 257 (344)
T 2f8l_A 210 PVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKP---GGYLFFLVP 257 (344)
T ss_dssp CCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred CCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCC---CCEEEEEEC
Confidence 7776654331 2579999999999 888888764
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.04 E-value=1e-08 Score=78.25 Aligned_cols=152 Identities=16% Similarity=0.247 Sum_probs=94.0
Q ss_pred CCCeEEEeCCcccHHHHHHH--------HHC-------CCCeEEEeeCch-h-------hccCCC-----------C-CC
Q 030291 15 GLRSMVDVGGGTGAFARIIS--------EAF-------PGIKCTVLDLPH-A-------VTDMPQ-----------T-DN 59 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~--------~~~-------~~~~~~~~D~~~-~-------~~~a~~-----------~-~~ 59 (180)
..-+|+|+|||+|.++..+. +.+ |..++..-|++. . +...++ . .+
T Consensus 52 ~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~ 131 (374)
T 3b5i_A 52 PPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRS 131 (374)
T ss_dssp CCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBC
T ss_pred CceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCc
Confidence 35789999999999888762 222 678899999865 4 232211 0 11
Q ss_pred --eeEEecCCcc-cC--CCccEEEeccccccCChH------------------------------------HHHHHHHHH
Q 030291 60 --LKYIEGDMFQ-FI--PPSDAFFFKTVFHFFDDE------------------------------------DCLKLLKKC 98 (180)
Q Consensus 60 --~~~~~~d~~~-~~--~~~D~v~~~~~l~~~~~~------------------------------------~~~~~l~~~ 98 (180)
+.-+.+++.. .+ .++|+|+++.+||++.+. ++..+|+..
T Consensus 132 ~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~r 211 (374)
T 3b5i_A 132 YFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRAR 211 (374)
T ss_dssp SEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223445543 22 369999999999998621 345679999
Q ss_pred HHhhccCCCCcEEEEEEeeeCCCCCch----------hhhhhhh-ccce-----e--eEeecCCcccCHHHHHHHHH-Hc
Q 030291 99 REAIASNGERGKVLIIDIVIDEKEDDR----------ELTESKL-LFDI-----F--MNFNVGGKERTEQEWGSLFV-NA 159 (180)
Q Consensus 99 ~~~L~p~~~~G~~~~~~~~~~~~~~~~----------~~~~~~~-~~~~-----~--~~~~~~~~~~~~~~~~~~l~-~a 159 (180)
++.|+| ||.+++.-....+..... .+...+. .... . .....+...++.+++.+.++ +.
T Consensus 212 a~eL~p---GG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~ 288 (374)
T 3b5i_A 212 AAEVKR---GGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANG 288 (374)
T ss_dssp HHHEEE---EEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHC
T ss_pred HHHhCC---CCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcC
Confidence 999999 888888776554432110 0101000 0000 0 00112335578999999998 58
Q ss_pred CCeEEEEeec
Q 030291 160 GFTHYKIAPI 169 (180)
Q Consensus 160 Gf~~~~~~~~ 169 (180)
||++.++...
T Consensus 289 ~F~I~~le~~ 298 (374)
T 3b5i_A 289 SFAIDKLVVY 298 (374)
T ss_dssp SEEEEEEEEE
T ss_pred CcEEEEEEEE
Confidence 9998776544
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.03 E-value=5.5e-10 Score=86.24 Aligned_cols=96 Identities=13% Similarity=0.093 Sum_probs=73.0
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------C-C-CeeEEecCCccc-------CCCccEE
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------T-D-NLKYIEGDMFQF-------IPPSDAF 77 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~-~-~~~~~~~d~~~~-------~~~~D~v 77 (180)
.++.+|||+|||+|.++..+++.. ..+++++|+++ +++.+++ . . ++++.++|+.+. ...||+|
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~I 297 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEE
Confidence 467899999999999999998874 45899999965 8887764 2 3 789999998652 2369999
Q ss_pred Eeccc---------cccCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 78 FFKTV---------FHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 78 ~~~~~---------l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
++.-. .+.... ...++.++.+.|+| ||.++++.
T Consensus 298 i~dpP~~~~~~~~~~~~~~~--~~~~l~~~~~~Lkp---gG~l~~~~ 339 (396)
T 3c0k_A 298 VMDPPKFVENKSQLMGACRG--YKDINMLAIQLLNE---GGILLTFS 339 (396)
T ss_dssp EECCSSTTTCSSSSSCCCTH--HHHHHHHHHHTEEE---EEEEEEEE
T ss_pred EECCCCCCCChhHHHHHHHH--HHHHHHHHHHhcCC---CcEEEEEe
Confidence 98532 112223 34789999999999 77777754
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.2e-09 Score=84.69 Aligned_cols=102 Identities=16% Similarity=0.153 Sum_probs=77.2
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCC-CCeEEEeeCch-hhccCCC------CCCeeEEecCCccc---C-CCccEEEec--
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFP-GIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQF---I-PPSDAFFFK-- 80 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~---~-~~~D~v~~~-- 80 (180)
++.+|||+|||+|..+..+++..+ ..+++++|+++ ++..+++ ..++.+.++|.... . ..||.|++.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 778999999999999999999864 47899999966 7777764 35799999998651 2 369999972
Q ss_pred ----cccccCCh--------------HHHHHHHHHHHHhhccCCCCcEEEEEEeeeC
Q 030291 81 ----TVFHFFDD--------------EDCLKLLKKCREAIASNGERGKVLIIDIVID 119 (180)
Q Consensus 81 ----~~l~~~~~--------------~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~ 119 (180)
+++.+-++ ..+.++|+++.++||| ||.++++++...
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~LvysTcs~~ 250 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRP---GGTLVYSTCTLN 250 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEESCCS
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCC---CCEEEEecccCC
Confidence 23333222 1234789999999999 888888776543
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.01 E-value=1.2e-10 Score=84.26 Aligned_cols=102 Identities=11% Similarity=0.184 Sum_probs=71.8
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----CCCeeEEecCCcc-cCC---Cc
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----TDNLKYIEGDMFQ-FIP---PS 74 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----~~~~~~~~~d~~~-~~~---~~ 74 (180)
.+++.+. ..++.+|||||||+|.++..+++.. .+++++|+++ +++.+++ ..+++++++|+.+ +.+ .|
T Consensus 20 ~i~~~~~--~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~f 95 (245)
T 1yub_A 20 QIIKQLN--LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRY 95 (245)
T ss_dssp HHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEE
T ss_pred HHHHhcC--CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCCc
Confidence 4455555 5678899999999999999999984 7899999965 8888876 2579999999966 222 47
Q ss_pred cEEEeccccccCChHHHH----------HHH----HHHHHhhccCCCCcEEEEE
Q 030291 75 DAFFFKTVFHFFDDEDCL----------KLL----KKCREAIASNGERGKVLII 114 (180)
Q Consensus 75 D~v~~~~~l~~~~~~~~~----------~~l----~~~~~~L~p~~~~G~~~~~ 114 (180)
.|+++-. ++...+... .++ +.+.++|+| ||.+.+.
T Consensus 96 -~vv~n~P-y~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~---~G~l~v~ 144 (245)
T 1yub_A 96 -KIVGNIP-YHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDI---HRTLGLL 144 (245)
T ss_dssp -EEEEECC-SSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCG---GGSHHHH
T ss_pred -EEEEeCC-ccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCC---CCchhhh
Confidence 5555422 222222222 223 668999999 8887664
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=7.3e-10 Score=83.76 Aligned_cols=92 Identities=15% Similarity=0.172 Sum_probs=73.0
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccCCCccEEEecccccc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFIPPSDAFFFKTVFHF 85 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~~~~D~v~~~~~l~~ 85 (180)
.++.+|||+|||+|.++.. ++ ...+++++|+++ +++.+++ ..++++.++|..+....||+|++.-.-.
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dpP~~- 269 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNLPKF- 269 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECCTTT-
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECCcHh-
Confidence 4678999999999999998 76 377899999965 8887764 2579999999976556799999853211
Q ss_pred CChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 86 FDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
.. .++..+.++|+| ||.+++.+..
T Consensus 270 ---~~--~~l~~~~~~L~~---gG~l~~~~~~ 293 (336)
T 2yx1_A 270 ---AH--KFIDKALDIVEE---GGVIHYYTIG 293 (336)
T ss_dssp ---GG--GGHHHHHHHEEE---EEEEEEEEEE
T ss_pred ---HH--HHHHHHHHHcCC---CCEEEEEEee
Confidence 11 679999999999 8888887654
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.01 E-value=6.6e-10 Score=86.91 Aligned_cols=104 Identities=7% Similarity=0.049 Sum_probs=76.6
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCC-CCeEEEeeCch-hhccCCC------CCCeeEEecCCccc----CCCccEEEec
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFP-GIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQF----IPPSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~----~~~~D~v~~~ 80 (180)
..++.+|||+|||+|..+..+++..+ ..+++++|+++ +++.+++ ..++.+.+.|..+. ...||+|++.
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D 182 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD 182 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence 46788999999999999999988754 46899999965 7777654 45789999988542 2469999973
Q ss_pred c------ccccCChH--------------HHHHHHHHHHHhhccCCCCcEEEEEEeeeC
Q 030291 81 T------VFHFFDDE--------------DCLKLLKKCREAIASNGERGKVLIIDIVID 119 (180)
Q Consensus 81 ~------~l~~~~~~--------------~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~ 119 (180)
. ++..-++. .+.++|+.+.++|+| ||.++.+.+...
T Consensus 183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvYsTCs~~ 238 (456)
T 3m4x_A 183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKN---KGQLIYSTCTFA 238 (456)
T ss_dssp CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEE---EEEEEEEESCCC
T ss_pred CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEEeecc
Confidence 2 23222221 233789999999999 888888776543
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=4.9e-10 Score=83.05 Aligned_cols=77 Identities=13% Similarity=0.221 Sum_probs=61.8
Q ss_pred ccccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----CCCeeEEecCCcc-cCC--Cc
Q 030291 3 TLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----TDNLKYIEGDMFQ-FIP--PS 74 (180)
Q Consensus 3 ~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----~~~~~~~~~d~~~-~~~--~~ 74 (180)
+.+++.+. ..++.+|||||||+|.++..+++. ..+++++|+++ +++.+++ ..+++++++|+.+ +.+ .|
T Consensus 40 ~~Iv~~l~--~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~f 115 (295)
T 3gru_A 40 NKAVESAN--LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDF 115 (295)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCC
T ss_pred HHHHHhcC--CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCc
Confidence 34555565 677889999999999999999998 57899999965 8887765 4789999999976 333 49
Q ss_pred cEEEecccc
Q 030291 75 DAFFFKTVF 83 (180)
Q Consensus 75 D~v~~~~~l 83 (180)
|.|+++...
T Consensus 116 D~Iv~NlPy 124 (295)
T 3gru_A 116 NKVVANLPY 124 (295)
T ss_dssp SEEEEECCG
T ss_pred cEEEEeCcc
Confidence 999987554
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.99 E-value=1e-09 Score=79.36 Aligned_cols=62 Identities=18% Similarity=0.405 Sum_probs=50.6
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----CCCeeEEecCCcc
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----TDNLKYIEGDMFQ 69 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----~~~~~~~~~d~~~ 69 (180)
.+++.+. ..++.+|||||||+|.++..+++.. .+++++|+++ +++.+++ ..+++++++|+.+
T Consensus 21 ~i~~~~~--~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~ 87 (244)
T 1qam_A 21 KIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQ 87 (244)
T ss_dssp HHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGG
T ss_pred HHHHhCC--CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHh
Confidence 4455555 5678899999999999999999984 6899999965 7777654 3689999999966
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.3e-09 Score=85.42 Aligned_cols=104 Identities=9% Similarity=0.048 Sum_probs=76.9
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCC-CeEEEeeCch-hhccCCC-----CCCeeEEecCCccc----CCCccEEEe--
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPG-IKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQF----IPPSDAFFF-- 79 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~-~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~~----~~~~D~v~~-- 79 (180)
..++.+|||+|||+|..+..+++..++ .+++++|+++ ++..+++ ...+.+.++|..+. ...||+|++
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~~~~FD~Il~D~ 178 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVLLDA 178 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHCSCEEEEEEEC
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhccccCCEEEECC
Confidence 467889999999999999999988654 6899999966 8777764 12288899998542 236999995
Q ss_pred ----ccccccCChH--------------HHHHHHHHHHHhhccCCCCcEEEEEEeeeC
Q 030291 80 ----KTVFHFFDDE--------------DCLKLLKKCREAIASNGERGKVLIIDIVID 119 (180)
Q Consensus 80 ----~~~l~~~~~~--------------~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~ 119 (180)
.+++..-++. .+.++|+.+.++|+| ||.++.+.+...
T Consensus 179 PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvysTCs~~ 233 (464)
T 3m6w_A 179 PCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGP---GGVLVYSTCTFA 233 (464)
T ss_dssp CCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEE---EEEEEEEESCCC
T ss_pred CcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeccCc
Confidence 2233332321 125789999999999 888888766543
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.95 E-value=1.3e-09 Score=84.06 Aligned_cols=100 Identities=17% Similarity=0.119 Sum_probs=74.3
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------C-CCeeEEecCCccc-------CCCccEEE
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------T-DNLKYIEGDMFQF-------IPPSDAFF 78 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~-~~~~~~~~d~~~~-------~~~~D~v~ 78 (180)
+++.+|||+|||+|.++..+++.. ..+++++|+++ +++.+++ . .++++.++|+.+. ...||+|+
T Consensus 216 ~~~~~VLDl~~G~G~~~~~la~~g-~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi 294 (396)
T 2as0_A 216 QPGDRVLDVFTYTGGFAIHAAIAG-ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 294 (396)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hCCCeEEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEE
Confidence 367899999999999999998872 34899999966 8888764 1 2899999998652 23699999
Q ss_pred eccccccCCh-------HHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 79 FKTVFHFFDD-------EDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 79 ~~~~l~~~~~-------~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
+.-....... .....++.++.+.|+| ||.++++...
T Consensus 295 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~~~~ 337 (396)
T 2as0_A 295 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKD---GGILVTCSCS 337 (396)
T ss_dssp ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEE---EEEEEEEECC
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEECC
Confidence 8532211111 2344789999999999 8877776643
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.6e-09 Score=82.26 Aligned_cols=99 Identities=14% Similarity=0.133 Sum_probs=71.5
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCccc----CCCccEEEecccc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQF----IPPSDAFFFKTVF 83 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~~----~~~~D~v~~~~~l 83 (180)
+++.+|||+|||+|.++..+++. +++++++|+++ +++.+++ .....+.++|+.+. .+.||+|++.-..
T Consensus 213 ~~g~~VLDlg~GtG~~sl~~a~~--ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~ 290 (393)
T 4dmg_A 213 RPGERVLDVYSYVGGFALRAARK--GAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPT 290 (393)
T ss_dssp CTTCEEEEESCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCC
T ss_pred cCCCeEEEcccchhHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCc
Confidence 45889999999999999999987 55699999976 8888875 22235668888652 2349999985332
Q ss_pred ccCC-------hHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 84 HFFD-------DEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 84 ~~~~-------~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
..-. ......+++.+.++|+| ||.++++...
T Consensus 291 f~~~~~~~~~~~~~~~~ll~~a~~~Lkp---GG~Lv~~s~s 328 (393)
T 4dmg_A 291 LVKRPEELPAMKRHLVDLVREALRLLAE---EGFLWLSSCS 328 (393)
T ss_dssp CCSSGGGHHHHHHHHHHHHHHHHHTEEE---EEEEEEEECC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECC
Confidence 1100 01234789999999999 8888766643
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.5e-09 Score=83.48 Aligned_cols=97 Identities=12% Similarity=0.088 Sum_probs=73.2
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCccc-------CCCccEEEec
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQF-------IPPSDAFFFK 80 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~-------~~~~D~v~~~ 80 (180)
++.+|||+|||+|.++..+++. ..+++++|+++ +++.+++ ..++++.++|+.+. ...||+|++.
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 5679999999999999999988 56899999966 8888764 24599999998652 2369999984
Q ss_pred cccccCCh-------HHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 81 TVFHFFDD-------EDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 81 ~~l~~~~~-------~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
-....... .....++.++.+.|+| ||.++++..
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~ 326 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKE---GGILATASC 326 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEE---EEEEEEEEC
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEEC
Confidence 32111100 2344789999999999 888777654
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=2e-08 Score=76.75 Aligned_cols=150 Identities=17% Similarity=0.192 Sum_probs=90.2
Q ss_pred CCeEEEeCCcccHHHHHHHHH-----------------CCCCeEEEeeCch-h-----------hccCCC----CCCeeE
Q 030291 16 LRSMVDVGGGTGAFARIISEA-----------------FPGIKCTVLDLPH-A-----------VTDMPQ----TDNLKY 62 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~-----------------~~~~~~~~~D~~~-~-----------~~~a~~----~~~~~~ 62 (180)
.-+|+|+||++|.++..+... .|..+++.-|++. - .+..++ ..+-.|
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 678999999999999877655 3567888999862 1 111100 112234
Q ss_pred Ee---cCCcc-cC--CCccEEEeccccccCChHH-------------------------------------HHHHHHHHH
Q 030291 63 IE---GDMFQ-FI--PPSDAFFFKTVFHFFDDED-------------------------------------CLKLLKKCR 99 (180)
Q Consensus 63 ~~---~d~~~-~~--~~~D~v~~~~~l~~~~~~~-------------------------------------~~~~l~~~~ 99 (180)
.. +++.. .+ .++|+|+++.+||++.+.. +..+|+..+
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 34433 22 3699999999999985421 223477779
Q ss_pred HhhccCCCCcEEEEEEeeeCCC--CCch--hhhhhhh------cccee--eEeecCCcccCHHHHHHHHHHcC-CeEEEE
Q 030291 100 EAIASNGERGKVLIIDIVIDEK--EDDR--ELTESKL------LFDIF--MNFNVGGKERTEQEWGSLFVNAG-FTHYKI 166 (180)
Q Consensus 100 ~~L~p~~~~G~~~~~~~~~~~~--~~~~--~~~~~~~------~~~~~--~~~~~~~~~~~~~~~~~~l~~aG-f~~~~~ 166 (180)
+.|+| ||.+++.-....+. .... .+...+. ..+.. .....+..+.+.+|+++++++.| |++.++
T Consensus 213 ~eL~p---GG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~l 289 (384)
T 2efj_A 213 EELIS---RGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYL 289 (384)
T ss_dssp HHEEE---EEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEE
T ss_pred HHhcc---CCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEE
Confidence 99999 88888876655443 1010 1111111 00000 00112345679999999999985 787766
Q ss_pred ee
Q 030291 167 AP 168 (180)
Q Consensus 167 ~~ 168 (180)
..
T Consensus 290 e~ 291 (384)
T 2efj_A 290 ET 291 (384)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.9e-09 Score=79.01 Aligned_cols=89 Identities=17% Similarity=0.129 Sum_probs=64.3
Q ss_pred ccccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC---CCCeeEEecCCcc-cCC---Cc
Q 030291 3 TLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ---TDNLKYIEGDMFQ-FIP---PS 74 (180)
Q Consensus 3 ~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~---~~~~~~~~~d~~~-~~~---~~ 74 (180)
+.+++... ..++ +|||||||+|.++..+++.. .+++++|+++ +++.+++ ..+++++++|+.+ +.+ .+
T Consensus 37 ~~Iv~~~~--~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~ 111 (271)
T 3fut_A 37 RRIVEAAR--PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQG 111 (271)
T ss_dssp HHHHHHHC--CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTT
T ss_pred HHHHHhcC--CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCc
Confidence 34455555 5667 99999999999999999984 6799999965 8877764 4689999999976 222 57
Q ss_pred cEEEeccccccCChHHHHHHHHH
Q 030291 75 DAFFFKTVFHFFDDEDCLKLLKK 97 (180)
Q Consensus 75 D~v~~~~~l~~~~~~~~~~~l~~ 97 (180)
|.|+++-. +++..+-..+++..
T Consensus 112 ~~iv~NlP-y~iss~il~~ll~~ 133 (271)
T 3fut_A 112 SLLVANLP-YHIATPLVTRLLKT 133 (271)
T ss_dssp EEEEEEEC-SSCCHHHHHHHHHH
T ss_pred cEEEecCc-ccccHHHHHHHhcC
Confidence 88777654 45555544444443
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=3.6e-09 Score=87.11 Aligned_cols=96 Identities=16% Similarity=0.212 Sum_probs=72.5
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------C-CCeeEEecCCccc----CCCccEEEec
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------T-DNLKYIEGDMFQF----IPPSDAFFFK 80 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~-~~~~~~~~d~~~~----~~~~D~v~~~ 80 (180)
.++.+|||+|||+|.++..++... ..+++++|+++ +++.+++ . .+++++++|+.+. ...||+|++.
T Consensus 538 ~~g~~VLDlg~GtG~~sl~aa~~g-a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~D 616 (703)
T 3v97_A 538 SKGKDFLNLFSYTGSATVHAGLGG-ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFID 616 (703)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEEC
T ss_pred cCCCcEEEeeechhHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEEC
Confidence 357899999999999999988753 34699999976 8888874 2 4799999999762 2369999984
Q ss_pred cc-----------cccCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 81 TV-----------FHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 81 ~~-----------l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
-. ++.. .....+++.+.++|+| ||.++++.
T Consensus 617 PP~f~~~~~~~~~~~~~--~~~~~ll~~a~~~Lkp---gG~L~~s~ 657 (703)
T 3v97_A 617 PPTFSNSKRMEDAFDVQ--RDHLALMKDLKRLLRA---GGTIMFSN 657 (703)
T ss_dssp CCSBC-------CCBHH--HHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred CccccCCccchhHHHHH--HHHHHHHHHHHHhcCC---CcEEEEEE
Confidence 32 1211 2344789999999999 77777544
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=5.5e-09 Score=81.55 Aligned_cols=90 Identities=11% Similarity=0.094 Sum_probs=64.8
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcccC-------CCccEEE
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQFI-------PPSDAFF 78 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~~-------~~~D~v~ 78 (180)
..++.+|||+|||+|.++..+++. ..+++++|+++ +++.|++ ..++++.++|+.+.. ..||+|+
T Consensus 284 ~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv 361 (433)
T 1uwv_A 284 VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL 361 (433)
T ss_dssp CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEE
T ss_pred CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEE
Confidence 456789999999999999999887 67899999966 8888864 348999999996622 2599999
Q ss_pred eccccccCChHHHHHHHHHHHHhhccCCCCcEEEE
Q 030291 79 FKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 79 ~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
++---.-. ..+++.+.+ ++| ++.+++
T Consensus 362 ~dPPr~g~-----~~~~~~l~~-~~p---~~ivyv 387 (433)
T 1uwv_A 362 LDPARAGA-----AGVMQQIIK-LEP---IRIVYV 387 (433)
T ss_dssp ECCCTTCC-----HHHHHHHHH-HCC---SEEEEE
T ss_pred ECCCCccH-----HHHHHHHHh-cCC---CeEEEE
Confidence 84322111 134555543 678 555554
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2.4e-08 Score=77.68 Aligned_cols=92 Identities=12% Similarity=0.118 Sum_probs=66.9
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCcccCC-CccEEEecccccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQFIP-PSDAFFFKTVFHF 85 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~~~~-~~D~v~~~~~l~~ 85 (180)
..++.+|||+|||+|.++..+++. ..+++++|+++ +++.+++ .-.+++.++|+.+..+ .||+|++.-.-..
T Consensus 288 ~~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~~~~fD~Vv~dPPr~g 365 (425)
T 2jjq_A 288 LVEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSVKGFDTVIVDPPRAG 365 (425)
T ss_dssp HCCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTCCCTTCSEEEECCCTTC
T ss_pred cCCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHcCccCCCEEEEcCCccc
Confidence 356789999999999999999887 56899999966 8888875 1128999999976443 6999998543211
Q ss_pred CChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 86 FDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
.. . .+++.+. .|+| +|.++++
T Consensus 366 ~~--~--~~~~~l~-~l~p---~givyvs 386 (425)
T 2jjq_A 366 LH--P--RLVKRLN-REKP---GVIVYVS 386 (425)
T ss_dssp SC--H--HHHHHHH-HHCC---SEEEEEE
T ss_pred hH--H--HHHHHHH-hcCC---CcEEEEE
Confidence 11 1 3455554 4899 7766664
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.8e-08 Score=77.37 Aligned_cols=108 Identities=15% Similarity=0.114 Sum_probs=77.2
Q ss_pred cccccccccCCCeEEEeCCcccHHHHHHHHHCCC--------------------------------------CeEEEeeC
Q 030291 6 VKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPG--------------------------------------IKCTVLDL 47 (180)
Q Consensus 6 ~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~--------------------------------------~~~~~~D~ 47 (180)
+.... +.+...++|.+||+|.++...+....+ .+++++|+
T Consensus 187 l~l~~--~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDi 264 (384)
T 3ldg_A 187 ILLSN--WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDF 264 (384)
T ss_dssp HHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEES
T ss_pred HHHhC--CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEEC
Confidence 34444 567889999999999998877655322 56999999
Q ss_pred ch-hhccCCC-------CCCeeEEecCCcccC--CCccEEEeccc--cccCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 48 PH-AVTDMPQ-------TDNLKYIEGDMFQFI--PPSDAFFFKTV--FHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 48 ~~-~~~~a~~-------~~~~~~~~~d~~~~~--~~~D~v~~~~~--l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
+. +++.+++ ..++++.++|+.+.. ..||+|+++=- ...-.......+.+.+.+.|++. +|+.+++..
T Consensus 265 d~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~-~g~~~~iit 343 (384)
T 3ldg_A 265 DGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPL-KTWSQFILT 343 (384)
T ss_dssp CHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTC-TTSEEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhC-CCcEEEEEE
Confidence 65 8888874 346999999997632 36999999733 22223345567788888888763 378887765
Q ss_pred e
Q 030291 116 I 116 (180)
Q Consensus 116 ~ 116 (180)
.
T Consensus 344 ~ 344 (384)
T 3ldg_A 344 N 344 (384)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.82 E-value=8.6e-09 Score=79.41 Aligned_cols=109 Identities=12% Similarity=0.072 Sum_probs=75.8
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCC--------------------------------------CeEEEee
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPG--------------------------------------IKCTVLD 46 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~--------------------------------------~~~~~~D 46 (180)
++.... +.+...+||++||+|.++...+....+ .+++++|
T Consensus 193 ll~l~~--~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvD 270 (393)
T 3k0b_A 193 LVLLTS--WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGD 270 (393)
T ss_dssp HHHHSC--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEE
T ss_pred HHHHhC--CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEE
Confidence 334444 567889999999999998877665322 5699999
Q ss_pred Cch-hhccCCC-------CCCeeEEecCCcccC--CCccEEEeccccc-cCC-hHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 47 LPH-AVTDMPQ-------TDNLKYIEGDMFQFI--PPSDAFFFKTVFH-FFD-DEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 47 ~~~-~~~~a~~-------~~~~~~~~~d~~~~~--~~~D~v~~~~~l~-~~~-~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
++. +++.|++ ..++++.++|+.+.. ..||+|+++=-.. .+. ......+.+.+.+.|++. +||.+++.
T Consensus 271 id~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~-~g~~~~ii 349 (393)
T 3k0b_A 271 IDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRM-PTWSVYVL 349 (393)
T ss_dssp SCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTC-TTCEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcC-CCCEEEEE
Confidence 965 8888874 346999999997632 3699999973321 122 234446777777777763 37777776
Q ss_pred Ee
Q 030291 115 DI 116 (180)
Q Consensus 115 ~~ 116 (180)
..
T Consensus 350 t~ 351 (393)
T 3k0b_A 350 TS 351 (393)
T ss_dssp EC
T ss_pred EC
Confidence 53
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=3.5e-09 Score=78.70 Aligned_cols=77 Identities=14% Similarity=0.236 Sum_probs=61.2
Q ss_pred ccccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCccc---C--
Q 030291 3 TLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQF---I-- 71 (180)
Q Consensus 3 ~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~~---~-- 71 (180)
+.+++.+. ..++.+|||+|||+|..+..+++.+++.+++++|.++ +++.+++ ..+++++++|+.+- .
T Consensus 16 ~e~l~~L~--~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~ 93 (301)
T 1m6y_A 16 REVIEFLK--PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKT 93 (301)
T ss_dssp HHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHH
T ss_pred HHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHh
Confidence 34555555 5678899999999999999999998888999999966 8887764 26899999998541 1
Q ss_pred ---CCccEEEecc
Q 030291 72 ---PPSDAFFFKT 81 (180)
Q Consensus 72 ---~~~D~v~~~~ 81 (180)
..||.|++..
T Consensus 94 ~g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 94 LGIEKVDGILMDL 106 (301)
T ss_dssp TTCSCEEEEEEEC
T ss_pred cCCCCCCEEEEcC
Confidence 3699998743
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.78 E-value=2.3e-09 Score=83.98 Aligned_cols=102 Identities=15% Similarity=0.068 Sum_probs=74.1
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHC-------------CCCeEEEeeCch-hhccCCC------CC--CeeEEecCCccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAF-------------PGIKCTVLDLPH-AVTDMPQ------TD--NLKYIEGDMFQF 70 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~-------------~~~~~~~~D~~~-~~~~a~~------~~--~~~~~~~d~~~~ 70 (180)
...+.+|||+|||+|.++..+.+.. +..+++|+|+++ ++..|+. .. +..+.++|.+..
T Consensus 169 ~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~ 248 (445)
T 2okc_A 169 PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEK 248 (445)
T ss_dssp CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTS
T ss_pred CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCC
Confidence 3456799999999999988877652 346799999955 7666653 11 678899998763
Q ss_pred C--CCccEEEeccccccCChH---------------HHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 71 I--PPSDAFFFKTVFHFFDDE---------------DCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 71 ~--~~~D~v~~~~~l~~~~~~---------------~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
. ..||+|+++-.+...... ....++..+.+.|+| ||.+.++.+.
T Consensus 249 ~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~---gG~~a~V~p~ 309 (445)
T 2okc_A 249 EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKT---GGRAAVVLPD 309 (445)
T ss_dssp CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEE---EEEEEEEEEH
T ss_pred cccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhcc---CCEEEEEECC
Confidence 3 369999998655443211 113789999999999 8988887653
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.76 E-value=3.9e-08 Score=74.54 Aligned_cols=151 Identities=15% Similarity=0.199 Sum_probs=92.0
Q ss_pred cCCCeEEEeCCcccHHHHHHHHH----------------CCCCeEEEeeCch-hhccCCC--C-----CCeeEE---ecC
Q 030291 14 QGLRSMVDVGGGTGAFARIISEA----------------FPGIKCTVLDLPH-AVTDMPQ--T-----DNLKYI---EGD 66 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~----------------~~~~~~~~~D~~~-~~~~a~~--~-----~~~~~~---~~d 66 (180)
+..-+|+|+||++|.++..+... .|...++.-|+|. .....-+ . .+-.|. .++
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS 129 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence 34568999999999876644322 4567889999865 4333221 1 122333 445
Q ss_pred Ccc-cC--CCccEEEeccccccCCh-------------------------------HHHHHHHHHHHHhhccCCCCcEEE
Q 030291 67 MFQ-FI--PPSDAFFFKTVFHFFDD-------------------------------EDCLKLLKKCREAIASNGERGKVL 112 (180)
Q Consensus 67 ~~~-~~--~~~D~v~~~~~l~~~~~-------------------------------~~~~~~l~~~~~~L~p~~~~G~~~ 112 (180)
+.. .+ .++|+|+++.++|++.+ .++..+|+..++.|+| ||.++
T Consensus 130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~p---GG~mv 206 (359)
T 1m6e_X 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVP---GGRMV 206 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCT---TCEEE
T ss_pred hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CceEE
Confidence 544 22 36999999999999754 1345669999999999 99998
Q ss_pred EEEeeeCCCCC--------chhhhhhhh------ccce--eeEeecCCcccCHHHHHHHHHHcCC-eEEEEe
Q 030291 113 IIDIVIDEKED--------DRELTESKL------LFDI--FMNFNVGGKERTEQEWGSLFVNAGF-THYKIA 167 (180)
Q Consensus 113 ~~~~~~~~~~~--------~~~~~~~~~------~~~~--~~~~~~~~~~~~~~~~~~~l~~aGf-~~~~~~ 167 (180)
+.-...++... ...+...+. ..+. ......+..+.+.+|+++.+++.|. ++.++.
T Consensus 207 l~~~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~e 278 (359)
T 1m6e_X 207 LTILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIE 278 (359)
T ss_dssp EEEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEE
T ss_pred EEEecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEEE
Confidence 87766554321 001111110 0000 0001123456789999999999965 665543
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.76 E-value=6.5e-09 Score=75.31 Aligned_cols=64 Identities=23% Similarity=0.456 Sum_probs=51.4
Q ss_pred ccccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC--CCCeeEEecCCcc
Q 030291 3 TLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ--TDNLKYIEGDMFQ 69 (180)
Q Consensus 3 ~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~--~~~~~~~~~d~~~ 69 (180)
+.+++.+. ..++.+|||||||+|.++..+++. +..+++++|++. +++.+++ ..+++++++|+.+
T Consensus 21 ~~iv~~~~--~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~ 87 (249)
T 3ftd_A 21 KKIAEELN--IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASK 87 (249)
T ss_dssp HHHHHHTT--CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTT
T ss_pred HHHHHhcC--CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhh
Confidence 34555555 667889999999999999999887 347899999965 8777765 3578999999965
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.3e-08 Score=78.19 Aligned_cols=103 Identities=15% Similarity=0.132 Sum_probs=73.8
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCC--------------------------------------CCeEEEeeCch-hhcc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFP--------------------------------------GIKCTVLDLPH-AVTD 53 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~--------------------------------------~~~~~~~D~~~-~~~~ 53 (180)
+.+..++||++||+|.++..++.... ..+++++|++. +++.
T Consensus 193 ~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~ 272 (385)
T 3ldu_A 193 WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDI 272 (385)
T ss_dssp CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHH
T ss_pred CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHH
Confidence 56788999999999999888776532 15799999965 8888
Q ss_pred CCC-------CCCeeEEecCCcccC--CCccEEEeccccc-cCC-hHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 54 MPQ-------TDNLKYIEGDMFQFI--PPSDAFFFKTVFH-FFD-DEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 54 a~~-------~~~~~~~~~d~~~~~--~~~D~v~~~~~l~-~~~-~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
|+. ..++++.++|+.+.. ..||+|+++=... .+. ......+.+++.+.|++. +|+.+++...
T Consensus 273 Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~-~g~~~~iit~ 345 (385)
T 3ldu_A 273 ARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKL-KNWSYYLITS 345 (385)
T ss_dssp HHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTS-BSCEEEEEES
T ss_pred HHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhC-CCCEEEEEEC
Confidence 875 247999999997632 3699999965432 222 234456777777777763 3677777643
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=5.4e-08 Score=70.59 Aligned_cols=98 Identities=10% Similarity=0.078 Sum_probs=64.2
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----CCCeeEEecCC--cc-cCCCccEEEeccccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----TDNLKYIEGDM--FQ-FIPPSDAFFFKTVFH 84 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----~~~~~~~~~d~--~~-~~~~~D~v~~~~~l~ 84 (180)
+++..+|||||||+|.++...++..+-.++.++|+.. +...... ..++.....++ .. ....+|+|++..+.+
T Consensus 72 l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DlVlsD~apn 151 (277)
T 3evf_A 72 VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIGES 151 (277)
T ss_dssp SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCCC
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCccEEEecCccC
Confidence 6788899999999999999887765555677888753 2111111 11455555554 11 123699999987665
Q ss_pred ----cCChHHHHHHHHHHHHhhccCCCC-cEEEE
Q 030291 85 ----FFDDEDCLKLLKKCREAIASNGER-GKVLI 113 (180)
Q Consensus 85 ----~~~~~~~~~~l~~~~~~L~p~~~~-G~~~~ 113 (180)
..+......+|..+.++|+| | |.+++
T Consensus 152 sG~~~~D~~rs~~LL~~a~~~Lkp---G~G~FV~ 182 (277)
T 3evf_A 152 SSSSVTEGERTVRVLDTVEKWLAC---GVDNFCV 182 (277)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHTT---CCSEEEE
T ss_pred cCchHHHHHHHHHHHHHHHHHhCC---CCCeEEE
Confidence 22222223457888999999 8 77777
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.69 E-value=5.7e-09 Score=75.86 Aligned_cols=63 Identities=17% Similarity=0.307 Sum_probs=51.8
Q ss_pred ccccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----CCCeeEEecCCcc
Q 030291 3 TLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----TDNLKYIEGDMFQ 69 (180)
Q Consensus 3 ~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----~~~~~~~~~d~~~ 69 (180)
+.+++.+. ..++.+|||||||+|.++..+++. ..+++++|+++ +++.+++ ..+++++++|+.+
T Consensus 19 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~--~~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~ 86 (255)
T 3tqs_A 19 QKIVSAIH--PQKTDTLVEIGPGRGALTDYLLTE--CDNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQ 86 (255)
T ss_dssp HHHHHHHC--CCTTCEEEEECCTTTTTHHHHTTT--SSEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTT
T ss_pred HHHHHhcC--CCCcCEEEEEcccccHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHh
Confidence 34555555 677889999999999999999988 46899999965 8887764 4789999999966
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.68 E-value=6.8e-08 Score=71.17 Aligned_cols=98 Identities=15% Similarity=0.199 Sum_probs=73.4
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----------CCCeeEEecCCcccC----CCccEE
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----------TDNLKYIEGDMFQFI----PPSDAF 77 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----------~~~~~~~~~d~~~~~----~~~D~v 77 (180)
+++++||=||.|.|..++.+++..+..+++.+|+.+ +++.+++ .+|++++.+|..... ..||+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 578999999999999999999988788999999954 7776653 579999999997633 369999
Q ss_pred EeccccccCC--hHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 78 FFKTVFHFFD--DEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 78 ~~~~~l~~~~--~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
++-..=-.-+ .....++++.++++|+| ||.++..
T Consensus 162 i~D~~dp~~~~~~L~t~eFy~~~~~~L~p---~Gv~v~q 197 (294)
T 3o4f_A 162 ISDCTDPIGPGESLFTSAFYEGCKRCLNP---GGIFVAQ 197 (294)
T ss_dssp EESCCCCCCTTCCSSCCHHHHHHHHTEEE---EEEEEEE
T ss_pred EEeCCCcCCCchhhcCHHHHHHHHHHhCC---CCEEEEe
Confidence 9743211001 11122789999999999 5655553
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.67 E-value=3.5e-09 Score=77.96 Aligned_cols=64 Identities=20% Similarity=0.305 Sum_probs=51.3
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHCCC--CeEEEeeCch-hhccCCC--CCCeeEEecCCcc
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPG--IKCTVLDLPH-AVTDMPQ--TDNLKYIEGDMFQ 69 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~--~~~~~~D~~~-~~~~a~~--~~~~~~~~~d~~~ 69 (180)
.+++.+. ..++.+|||||||+|.++..+++..+. .+++++|+++ +++.+++ ..+++++++|+.+
T Consensus 33 ~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~ 101 (279)
T 3uzu_A 33 AIVAAIR--PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALT 101 (279)
T ss_dssp HHHHHHC--CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGG
T ss_pred HHHHhcC--CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhc
Confidence 3455555 667889999999999999999988532 4599999965 8888765 3689999999965
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.4e-07 Score=68.54 Aligned_cols=127 Identities=17% Similarity=0.148 Sum_probs=80.7
Q ss_pred CCCeEEEeCCcccHHHHHHHHH-------CCC-----CeEEEeeC-c---hhhccC-----------C------------
Q 030291 15 GLRSMVDVGGGTGAFARIISEA-------FPG-----IKCTVLDL-P---HAVTDM-----------P------------ 55 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~-------~~~-----~~~~~~D~-~---~~~~~a-----------~------------ 55 (180)
+..+|||||+|+|..+..+++. .|. .+++++|. + +++..+ +
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 4579999999999988886654 563 58899997 4 122211 0
Q ss_pred --------CCCCeeEEecCCccc---CC-----CccEEEecc-ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeee
Q 030291 56 --------QTDNLKYIEGDMFQF---IP-----PSDAFFFKT-VFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVI 118 (180)
Q Consensus 56 --------~~~~~~~~~~d~~~~---~~-----~~D~v~~~~-~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~ 118 (180)
...++++..+|+.+. .+ .||+|+.-. .-..-++-....+++.+.+.|+| ||.++...
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~p---GG~l~tys--- 213 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARP---GGTLATFT--- 213 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEE---EEEEEESC---
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCC---CcEEEEEe---
Confidence 124677888998552 21 599999843 22212221134789999999999 66555311
Q ss_pred CCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEEEEeecCCceeEE
Q 030291 119 DEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFGIKSLI 176 (180)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~ 176 (180)
....+...|.++||++.++...++...++
T Consensus 214 -----------------------------aa~~vrr~L~~aGF~v~~~~g~~~kr~m~ 242 (257)
T 2qy6_A 214 -----------------------------SAGFVRRGLQEAGFTMQKRKGFGRKREML 242 (257)
T ss_dssp -----------------------------CBHHHHHHHHHHTEEEEEECCSTTCCCEE
T ss_pred -----------------------------CCHHHHHHHHHCCCEEEeCCCCCCCCceE
Confidence 01346778888999987766655543333
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.1e-08 Score=78.36 Aligned_cols=88 Identities=14% Similarity=0.202 Sum_probs=64.9
Q ss_pred CCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcccC-----------------
Q 030291 16 LRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQFI----------------- 71 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~~----------------- 71 (180)
+.+|||+|||+|.++..+++. ..+++++|+++ +++.+++ ..++++.++|+.+..
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~--~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~ 291 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARN--FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 291 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGG--SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCG
T ss_pred CCEEEEccCCCCHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccc
Confidence 578999999999999988875 45799999965 8888764 358999999985421
Q ss_pred --CCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 72 --PPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 72 --~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
..||+|++.--- ..+..++.+.|++ +|.++.+..
T Consensus 292 ~~~~fD~Vv~dPPr--------~g~~~~~~~~l~~---~g~ivyvsc 327 (369)
T 3bt7_A 292 KSYQCETIFVDPPR--------SGLDSETEKMVQA---YPRILYISC 327 (369)
T ss_dssp GGCCEEEEEECCCT--------TCCCHHHHHHHTT---SSEEEEEES
T ss_pred ccCCCCEEEECcCc--------cccHHHHHHHHhC---CCEEEEEEC
Confidence 269999873211 1234556667777 788888764
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.59 E-value=8.5e-08 Score=62.97 Aligned_cols=76 Identities=12% Similarity=0.080 Sum_probs=55.1
Q ss_pred ccCCCeEEEeCCccc-HHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcccCC----CccEEEeccccccC
Q 030291 13 FQGLRSMVDVGGGTG-AFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQFIP----PSDAFFFKTVFHFF 86 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G-~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~~~----~~D~v~~~~~l~~~ 86 (180)
..++.+|||||||.| ..+..|++.. +..++++|+++ .+. +++.|++++.. .||+|.+...
T Consensus 33 ~~~~~rVlEVG~G~g~~vA~~La~~~-g~~V~atDInp~Av~---------~v~dDiF~P~~~~Y~~~DLIYsirP---- 98 (153)
T 2k4m_A 33 SGPGTRVVEVGAGRFLYVSDYIRKHS-KVDLVLTDIKPSHGG---------IVRDDITSPRMEIYRGAALIYSIRP---- 98 (153)
T ss_dssp SCSSSEEEEETCTTCCHHHHHHHHHS-CCEEEEECSSCSSTT---------EECCCSSSCCHHHHTTEEEEEEESC----
T ss_pred CCCCCcEEEEccCCChHHHHHHHHhC-CCeEEEEECCccccc---------eEEccCCCCcccccCCcCEEEEcCC----
Confidence 456789999999999 5888888743 78899999955 444 78899987543 6999987433
Q ss_pred ChHHHHHHHHHHHHhhc
Q 030291 87 DDEDCLKLLKKCREAIA 103 (180)
Q Consensus 87 ~~~~~~~~l~~~~~~L~ 103 (180)
+++....+-++++...
T Consensus 99 -P~El~~~i~~lA~~v~ 114 (153)
T 2k4m_A 99 -PAEIHSSLMRVADAVG 114 (153)
T ss_dssp -CTTTHHHHHHHHHHHT
T ss_pred -CHHHHHHHHHHHHHcC
Confidence 2333345666666664
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.4e-07 Score=68.59 Aligned_cols=106 Identities=15% Similarity=0.161 Sum_probs=68.4
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----CCCeeEEec--CCcc-cCCCcc
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----TDNLKYIEG--DMFQ-FIPPSD 75 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----~~~~~~~~~--d~~~-~~~~~D 75 (180)
+|.+++. +.+..+|||||||+|.++...++..+-.++.++|+.. +...+.. ..++..... |+.. ....+|
T Consensus 81 ei~eK~~--Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~D 158 (282)
T 3gcz_A 81 WMEERGY--VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIPGD 158 (282)
T ss_dssp HHHHTTS--CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCCCS
T ss_pred HHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCCCCcC
Confidence 3445554 7888899999999999999888766566788999854 3333321 223333332 3322 223699
Q ss_pred EEEeccccc----cCChHHHHHHHHHHHHhhccCCCC--cEEEEE
Q 030291 76 AFFFKTVFH----FFDDEDCLKLLKKCREAIASNGER--GKVLII 114 (180)
Q Consensus 76 ~v~~~~~l~----~~~~~~~~~~l~~~~~~L~p~~~~--G~~~~~ 114 (180)
+|+|-.+.+ ..+......+|.-+.++|+| | |.+++-
T Consensus 159 vVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~---g~~G~Fv~K 200 (282)
T 3gcz_A 159 TLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQE---GNYTEFCIK 200 (282)
T ss_dssp EEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHH---HCCCEEEEE
T ss_pred EEEecCccCCCChHHHHHHHHHHHHHHHHHcCC---CCCCcEEEE
Confidence 999977766 22222223467777899999 6 766663
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.57 E-value=1.5e-08 Score=73.58 Aligned_cols=63 Identities=19% Similarity=0.202 Sum_probs=48.0
Q ss_pred ccccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----CCCeeEEecCCcc
Q 030291 3 TLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----TDNLKYIEGDMFQ 69 (180)
Q Consensus 3 ~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----~~~~~~~~~d~~~ 69 (180)
+.+++.+. ..++.+|||||||+|.++. +. ..+..+++++|+++ +++.+++ ..+++++++|+.+
T Consensus 11 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~ 78 (252)
T 1qyr_A 11 DSIVSAIN--PQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMT 78 (252)
T ss_dssp HHHHHHHC--CCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGG
T ss_pred HHHHHhcC--CCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhh
Confidence 34555555 6778899999999999999 54 44333499999965 8887765 2489999999965
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=2e-07 Score=71.49 Aligned_cols=92 Identities=13% Similarity=0.094 Sum_probs=69.3
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----C-----------------CCeeEEecCCccc--
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----T-----------------DNLKYIEGDMFQF-- 70 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----~-----------------~~~~~~~~d~~~~-- 70 (180)
.+.+|||+|||+|..+..+++..+..+++++|+++ +++.+++ . .++++.++|+...
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 46799999999999999999997777899999965 7766653 1 2388899998552
Q ss_pred -C-CCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 71 -I-PPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 71 -~-~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
. ..||+|++.- . .... .++..+.+.|++ ||.++++.
T Consensus 127 ~~~~~fD~I~lDP-~---~~~~--~~l~~a~~~lk~---gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLDP-F---GSPM--EFLDTALRSAKR---RGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEECC-S---SCCH--HHHHHHHHHEEE---EEEEEEEE
T ss_pred hccCCCCEEEeCC-C---CCHH--HHHHHHHHhcCC---CCEEEEEe
Confidence 2 3699999632 1 1222 779999999999 78666654
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.55 E-value=8e-08 Score=69.94 Aligned_cols=71 Identities=11% Similarity=0.246 Sum_probs=54.0
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeC-c-------hhhccCCC-------CCCeeEEecCCccc---C---
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDL-P-------HAVTDMPQ-------TDNLKYIEGDMFQF---I--- 71 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~-~-------~~~~~a~~-------~~~~~~~~~d~~~~---~--- 71 (180)
..++.+|||+|||+|..+..+++. +.+++++|+ + .+++.+++ ..+++++++|..+. .
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~ 158 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT 158 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc
Confidence 445689999999999999999886 668999999 5 55665543 24599999998652 2
Q ss_pred -CCccEEEecccccc
Q 030291 72 -PPSDAFFFKTVFHF 85 (180)
Q Consensus 72 -~~~D~v~~~~~l~~ 85 (180)
..||+|++.-++.+
T Consensus 159 ~~~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 159 QGKPDIVYLDPMYPE 173 (258)
T ss_dssp HCCCSEEEECCCC--
T ss_pred CCCccEEEECCCCCC
Confidence 46999999766554
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=1.3e-06 Score=66.12 Aligned_cols=84 Identities=14% Similarity=0.182 Sum_probs=63.7
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCCCCCeeEEecCCcccCC---CccEEEeccccccCChH
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQFIP---PSDAFFFKTVFHFFDDE 89 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~d~~~~~~---~~D~v~~~~~l~~~~~~ 89 (180)
++++.++||+||++|.++..+++. +.+++++|..++-......+++++.+.|.+...+ .+|+|+|-.+.. +
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~~----p 282 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVEK----P 282 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSSC----H
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCCC----h
Confidence 578999999999999999999988 6789999986655555557899999999976332 599999976643 3
Q ss_pred HHHHHHHHHHHhhcc
Q 030291 90 DCLKLLKKCREAIAS 104 (180)
Q Consensus 90 ~~~~~l~~~~~~L~p 104 (180)
. ..+..+.++|..
T Consensus 283 ~--~~~~l~~~wl~~ 295 (375)
T 4auk_A 283 A--KVAALMAQWLVN 295 (375)
T ss_dssp H--HHHHHHHHHHHT
T ss_pred H--HhHHHHHHHHhc
Confidence 3 334445555544
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=98.49 E-value=1e-06 Score=66.37 Aligned_cols=144 Identities=12% Similarity=0.110 Sum_probs=100.7
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCC---------------------------CCCeeEEecC
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ---------------------------TDNLKYIEGD 66 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~---------------------------~~~~~~~~~d 66 (180)
.+...|+.+|||......++...+++.+++-+|.|++++..++ ..+..++..|
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D 175 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 175 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence 4568899999999999999988777888999998775444432 2678899999
Q ss_pred Cccc-----------C-CCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhh-hhhc
Q 030291 67 MFQF-----------I-PPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTE-SKLL 133 (180)
Q Consensus 67 ~~~~-----------~-~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~-~~~~ 133 (180)
+.+. . ....++++-+++.|++.+....+++.+.+.. | +|.+++.+...+....+. ... ....
T Consensus 176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~---~~~~v~~e~i~~~~~~~~-fg~~m~~~ 250 (334)
T 1rjd_A 176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-S---HGLWISYDPIGGSQPNDR-FGAIMQSN 250 (334)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-S---SEEEEEEEECCCCSTTCC-HHHHHHHH
T ss_pred CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-C---CcEEEEEeccCCCCCcch-HHHHHHHH
Confidence 8651 1 1377899999999999999999999999987 5 688888888766222211 111 0000
Q ss_pred cce-eeEeecC-CcccCHHHHHHHHHHcCCe
Q 030291 134 FDI-FMNFNVG-GKERTEQEWGSLFVNAGFT 162 (180)
Q Consensus 134 ~~~-~~~~~~~-~~~~~~~~~~~~l~~aGf~ 162 (180)
... ......+ ..+.+.++..+.|.++||+
T Consensus 251 l~~~rg~~l~~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 251 LKESRNLEMPTLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp HHHHHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred hhcccCCcccccccCCCHHHHHHHHHHCCCC
Confidence 000 0000011 1345889999999999997
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=1.1e-07 Score=73.03 Aligned_cols=92 Identities=12% Similarity=0.047 Sum_probs=69.3
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCC-CeEEEeeCch-hhccCCC-------CCC-eeEEecCCcccC-----CCccEEEe
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPG-IKCTVLDLPH-AVTDMPQ-------TDN-LKYIEGDMFQFI-----PPSDAFFF 79 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~-~~~~~~D~~~-~~~~a~~-------~~~-~~~~~~d~~~~~-----~~~D~v~~ 79 (180)
++.+|||++||+|.++..++....+ .+++++|+++ +++.+++ ..+ +++.++|+.+.. ..||+|++
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l 131 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL 131 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence 5689999999999999999987655 5799999955 7777764 233 899999985522 25999998
Q ss_pred ccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 80 KTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 80 ~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
.- . .... .++..+.+.|++ ||.++++.
T Consensus 132 DP-~---g~~~--~~l~~a~~~Lk~---gGll~~t~ 158 (392)
T 3axs_A 132 DP-F---GTPV--PFIESVALSMKR---GGILSLTA 158 (392)
T ss_dssp CC-S---SCCH--HHHHHHHHHEEE---EEEEEEEE
T ss_pred CC-C---cCHH--HHHHHHHHHhCC---CCEEEEEe
Confidence 54 1 1122 679999999999 77666654
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.45 E-value=1e-06 Score=65.76 Aligned_cols=103 Identities=11% Similarity=0.013 Sum_probs=68.9
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCch-hhccCCC------CCCeeEEecCCcccC------CCccEEE
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQFI------PPSDAFF 78 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~~------~~~D~v~ 78 (180)
..++.+|||+|||+|..+..+++.. +..+++++|+++ +++.+++ ..++++.++|+.+.. ..||.|+
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl 179 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 179 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence 4677899999999999999998874 457899999965 7776654 357999999985521 3599999
Q ss_pred ec------cccccCChH----------------HHHHHHHHHHHhhccCCCCcEEEEEEeeeC
Q 030291 79 FK------TVFHFFDDE----------------DCLKLLKKCREAIASNGERGKVLIIDIVID 119 (180)
Q Consensus 79 ~~------~~l~~~~~~----------------~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~ 119 (180)
+. +++..-++. .+.++|+.+.+++ + ||.++.+.....
T Consensus 180 ~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l-~---gG~lvYsTCs~~ 238 (309)
T 2b9e_A 180 LDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFP-S---LQRLVYSTCSLC 238 (309)
T ss_dssp ECCCCCC------------------CCHHHHHHHHHHHHHHHTTCT-T---CCEEEEEESCCC
T ss_pred EcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhcc-C---CCEEEEECCCCC
Confidence 72 233221111 1234666776666 4 587777665443
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.5e-07 Score=76.24 Aligned_cols=89 Identities=16% Similarity=0.209 Sum_probs=62.9
Q ss_pred CCeEEEeCCcccHHHHHHHHH---C-CCCeEEEeeCchhhccCCC-------CCCeeEEecCCcc-cCC-CccEEEeccc
Q 030291 16 LRSMVDVGGGTGAFARIISEA---F-PGIKCTVLDLPHAVTDMPQ-------TDNLKYIEGDMFQ-FIP-PSDAFFFKTV 82 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~---~-~~~~~~~~D~~~~~~~a~~-------~~~~~~~~~d~~~-~~~-~~D~v~~~~~ 82 (180)
...|||||||+|.++.+.++. . ..++++++|-+.+...+++ .++|+++++|+.+ .+| ++|+|++-.+
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwM 437 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELL 437 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCC
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcC
Confidence 457999999999985544333 2 2347899998776656654 6789999999976 455 5999998544
Q ss_pred cccCChHHHHHHHHHHHHhhcc
Q 030291 83 FHFFDDEDCLKLLKKCREAIAS 104 (180)
Q Consensus 83 l~~~~~~~~~~~l~~~~~~L~p 104 (180)
=..+..+...++|....+.|||
T Consensus 438 G~fLl~E~mlevL~Ardr~LKP 459 (637)
T 4gqb_A 438 GSFADNELSPECLDGAQHFLKD 459 (637)
T ss_dssp BTTBGGGCHHHHHHHHGGGEEE
T ss_pred cccccccCCHHHHHHHHHhcCC
Confidence 3333334444667777899999
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=5.6e-07 Score=74.17 Aligned_cols=101 Identities=10% Similarity=0.058 Sum_probs=68.4
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHC------------------------------------------CCCeEEEeeCch-
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAF------------------------------------------PGIKCTVLDLPH- 49 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~------------------------------------------~~~~~~~~D~~~- 49 (180)
+++..++||.+||+|.++...+... +..+++|+|++.
T Consensus 188 ~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~ 267 (703)
T 3v97_A 188 WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDAR 267 (703)
T ss_dssp CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHH
T ss_pred CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHH
Confidence 5677899999999999988766541 235799999955
Q ss_pred hhccCCC-------CCCeeEEecCCccc-CC----CccEEEecccc--ccCChHHHHHHHHHHHHh---hccCCCCcEEE
Q 030291 50 AVTDMPQ-------TDNLKYIEGDMFQF-IP----PSDAFFFKTVF--HFFDDEDCLKLLKKCREA---IASNGERGKVL 112 (180)
Q Consensus 50 ~~~~a~~-------~~~~~~~~~d~~~~-~~----~~D~v~~~~~l--~~~~~~~~~~~l~~~~~~---L~p~~~~G~~~ 112 (180)
+++.|+. ...+++.++|+.+. .+ .+|+|+++=-. ..-.......+.+.+.+. +.| ||.++
T Consensus 268 av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~---g~~~~ 344 (703)
T 3v97_A 268 VIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFG---GWNLS 344 (703)
T ss_dssp HHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCT---TCEEE
T ss_pred HHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCC---CCeEE
Confidence 8888874 34589999999652 12 69999997322 212223333555555544 447 89888
Q ss_pred EEEe
Q 030291 113 IIDI 116 (180)
Q Consensus 113 ~~~~ 116 (180)
+...
T Consensus 345 ilt~ 348 (703)
T 3v97_A 345 LFSA 348 (703)
T ss_dssp EEES
T ss_pred EEeC
Confidence 8754
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.30 E-value=6e-07 Score=71.90 Aligned_cols=101 Identities=13% Similarity=0.064 Sum_probs=70.6
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCC------------------CCeEEEeeCch-hhccCCC------CCC-----eeEE
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFP------------------GIKCTVLDLPH-AVTDMPQ------TDN-----LKYI 63 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~------------------~~~~~~~D~~~-~~~~a~~------~~~-----~~~~ 63 (180)
.++.+|+|.+||+|.++..+.+... ...++|+|++. ++..|+. ... ..+.
T Consensus 168 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~ 247 (541)
T 2ar0_A 168 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIR 247 (541)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEE
T ss_pred CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeE
Confidence 4567999999999999887765421 24799999955 6666542 222 7788
Q ss_pred ecCCccc----CCCccEEEeccccccCCh------------HHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 64 EGDMFQF----IPPSDAFFFKTVFHFFDD------------EDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 64 ~~d~~~~----~~~~D~v~~~~~l~~~~~------------~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
++|.+.. ...||+|+++=.+..... .....++..+.+.|+| ||++.++-+.
T Consensus 248 ~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~---gGr~a~V~p~ 314 (541)
T 2ar0_A 248 LGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHP---GGRAAVVVPD 314 (541)
T ss_dssp ESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEE---EEEEEEEEEH
T ss_pred eCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCC---CCEEEEEecC
Confidence 9998652 347999999644332211 1122689999999999 8988887653
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.30 E-value=4.5e-07 Score=69.94 Aligned_cols=64 Identities=13% Similarity=0.227 Sum_probs=52.2
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----C----CCeeEEecCCcccC-----CCccEEEec
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----T----DNLKYIEGDMFQFI-----PPSDAFFFK 80 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----~----~~~~~~~~d~~~~~-----~~~D~v~~~ 80 (180)
++.+|||+|||+|..+..+++. +.+++++|.++ +++.++. . .+++++++|+.+.+ ..||+|++.
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred CCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence 4789999999999999988877 56899999966 8887764 1 47999999997631 369999983
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.29 E-value=3.8e-07 Score=66.26 Aligned_cols=87 Identities=18% Similarity=0.315 Sum_probs=58.5
Q ss_pred ccCC--CeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-h-------hccCCC-----C---CCeeEEecCCcccC---
Q 030291 13 FQGL--RSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-A-------VTDMPQ-----T---DNLKYIEGDMFQFI--- 71 (180)
Q Consensus 13 ~~~~--~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~-------~~~a~~-----~---~~~~~~~~d~~~~~--- 71 (180)
++++ .+|||++||+|..+..++.. +++++++|.++ + ++.++. . .+++++++|..+.+
T Consensus 84 l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~ 161 (258)
T 2oyr_A 84 IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI 161 (258)
T ss_dssp CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC
T ss_pred ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhC
Confidence 4556 89999999999999999998 56899999965 3 333221 1 47899999986522
Q ss_pred -CCccEEEeccccccCChHHHHHHHHHHHHhhcc
Q 030291 72 -PPSDAFFFKTVFHFFDDEDCLKLLKKCREAIAS 104 (180)
Q Consensus 72 -~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p 104 (180)
..||+|++.-++.+-. .. ..+++..+.|++
T Consensus 162 ~~~fDvV~lDP~y~~~~-~s--aavkk~~~~lr~ 192 (258)
T 2oyr_A 162 TPRPQVVYLDPMFPHKQ-KS--ALVKKEMRVFQS 192 (258)
T ss_dssp SSCCSEEEECCCCCCCC-C-------HHHHHHHH
T ss_pred cccCCEEEEcCCCCCcc-cc--hHHHHHHHHHHH
Confidence 2599999976665432 22 345555555555
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.22 E-value=1.5e-06 Score=70.83 Aligned_cols=93 Identities=17% Similarity=0.152 Sum_probs=63.2
Q ss_pred CCeEEEeCCcccHHHHHHHHH----C---------CCCeEEEeeCch-hhccCC-----C-CCCeeEEecCCcc-cC---
Q 030291 16 LRSMVDVGGGTGAFARIISEA----F---------PGIKCTVLDLPH-AVTDMP-----Q-TDNLKYIEGDMFQ-FI--- 71 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~----~---------~~~~~~~~D~~~-~~~~a~-----~-~~~~~~~~~d~~~-~~--- 71 (180)
...|||||||+|.++.+.+.. . ...+++++|.+. +....+ . ..+|+++.+|+.+ ..
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~ 489 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAK 489 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccc
Confidence 457999999999997543222 1 234899999865 222222 1 5779999999976 23
Q ss_pred ----CCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEE
Q 030291 72 ----PPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKV 111 (180)
Q Consensus 72 ----~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~ 111 (180)
..+|+|++-.+=....++...+.|..+.+.|+| ||.+
T Consensus 490 ~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp---~Gi~ 530 (745)
T 3ua3_A 490 DRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKP---TTIS 530 (745)
T ss_dssp HTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCT---TCEE
T ss_pred cCCCCcccEEEEeccccccchhccHHHHHHHHHhCCC---CcEE
Confidence 369999996653333444455778888899999 6543
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=1.4e-05 Score=58.51 Aligned_cols=99 Identities=12% Similarity=0.127 Sum_probs=64.1
Q ss_pred cccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----CCCeeEEec--CCcc-cCCCccEEEecccc
Q 030291 12 IFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----TDNLKYIEG--DMFQ-FIPPSDAFFFKTVF 83 (180)
Q Consensus 12 ~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----~~~~~~~~~--d~~~-~~~~~D~v~~~~~l 83 (180)
.+.++.+||||||++|.++..+++..+-.++.++|+.. +...... ..++..... |+.. ....+|+|++..+.
T Consensus 78 l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~DlVlsD~AP 157 (300)
T 3eld_A 78 YLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSDTLLCDIGE 157 (300)
T ss_dssp SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCC
T ss_pred CCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCcCEEeecCcC
Confidence 36788999999999999999999876555788999853 3222111 123332222 3322 22369999997666
Q ss_pred ccCCh-----HHHHHHHHHHHHhhccCCCC-cEEEEE
Q 030291 84 HFFDD-----EDCLKLLKKCREAIASNGER-GKVLII 114 (180)
Q Consensus 84 ~~~~~-----~~~~~~l~~~~~~L~p~~~~-G~~~~~ 114 (180)
+ ... .....+|.-+.++|+| | |.+++-
T Consensus 158 n-sG~~~~D~~rs~~LL~~A~~~Lkp---G~G~FV~K 190 (300)
T 3eld_A 158 S-SSNPLVERDRTMKVLENFERWKHV---NTENFCVK 190 (300)
T ss_dssp C-CSSHHHHHHHHHHHHHHHHHHCCT---TCCEEEEE
T ss_pred C-CCCHHHHHHHHHHHHHHHHHHhcC---CCCcEEEE
Confidence 5 322 2223567777899999 7 777664
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.15 E-value=1.2e-05 Score=56.07 Aligned_cols=90 Identities=13% Similarity=0.191 Sum_probs=61.7
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC---------CCCeeEEecCCccc------------
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ---------TDNLKYIEGDMFQF------------ 70 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~---------~~~~~~~~~d~~~~------------ 70 (180)
+.++++|||+||| ..+..+++ .++.+++.+|..+ ..+.+++ ..+++++.+|..+.
T Consensus 28 l~~a~~VLEiGtG--ySTl~lA~-~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~ 104 (202)
T 3cvo_A 28 YEEAEVILEYGSG--GSTVVAAE-LPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKW 104 (202)
T ss_dssp HHHCSEEEEESCS--HHHHHHHT-STTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTG
T ss_pred hhCCCEEEEECch--HHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhh
Confidence 5678899999984 56666665 3478999999844 6666553 34789999985321
Q ss_pred ---------------CCCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 71 ---------------IPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 71 ---------------~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
...||+|+.-+-.. ...+..+.+.|+| ||.+ +.|.
T Consensus 105 ~~l~~~~~~i~~~~~~~~fDlIfIDg~k~-------~~~~~~~l~~l~~---GG~I-v~DN 154 (202)
T 3cvo_A 105 RSYPDYPLAVWRTEGFRHPDVVLVDGRFR-------VGCALATAFSITR---PVTL-LFDD 154 (202)
T ss_dssp GGTTHHHHGGGGCTTCCCCSEEEECSSSH-------HHHHHHHHHHCSS---CEEE-EETT
T ss_pred hhHHHHhhhhhccccCCCCCEEEEeCCCc-------hhHHHHHHHhcCC---CeEE-EEeC
Confidence 13599999966421 2556667799999 5555 5553
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=8.4e-05 Score=55.87 Aligned_cols=149 Identities=13% Similarity=0.127 Sum_probs=101.7
Q ss_pred CCCeEEEeCCcccHHHHHHHHH-CCCCeEEEeeCchhhccCC-----------------------------CCCCeeEEe
Q 030291 15 GLRSMVDVGGGTGAFARIISEA-FPGIKCTVLDLPHAVTDMP-----------------------------QTDNLKYIE 64 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~-~~~~~~~~~D~~~~~~~a~-----------------------------~~~~~~~~~ 64 (180)
+...|+-+|||.-....++... .++.+++-+|.|++++.-+ ...+..++.
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~ 169 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG 169 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence 4678999999998888887765 3578899999887443321 136778888
Q ss_pred cCCccc------------CC-CccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhh
Q 030291 65 GDMFQF------------IP-PSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESK 131 (180)
Q Consensus 65 ~d~~~~------------~~-~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~ 131 (180)
.|+.+. .+ ..-++++-+++.|++......+++.+.+...+ |.+++.+...+.......+....
T Consensus 170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~~----~~~i~yE~i~p~d~fg~~M~~~l 245 (334)
T 3iei_A 170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFER----AMFINYEQVNMGDRFGQIMIENL 245 (334)
T ss_dssp CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSS----EEEEEEEECCTTSHHHHHHHHHH
T ss_pred cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCCC----ceEEEEeccCCCCHHHHHHHHHH
Confidence 998651 11 25588889999999999989999999988765 88888888755432211111111
Q ss_pred hccceeeEeecC-CcccCHHHHHHHHHHcCCeEEEEeecC
Q 030291 132 LLFDIFMNFNVG-GKERTEQEWGSLFVNAGFTHYKIAPIF 170 (180)
Q Consensus 132 ~~~~~~~~~~~~-~~~~~~~~~~~~l~~aGf~~~~~~~~~ 170 (180)
...... ..+ ..+.+.++..+.|.++||+.++..+..
T Consensus 246 ~~~g~p---l~sl~~y~t~~~~~~r~~~~Gw~~~~~~d~~ 282 (334)
T 3iei_A 246 RRRQCD---LAGVETCKSLESQKERLLSNGWETASAVDMM 282 (334)
T ss_dssp HTTTCC---CTTGGGGGCHHHHHHHHHTTTCSEEEEEEHH
T ss_pred HHhCCC---CcccccCCCHHHHHHHHHHcCCCcceeecHH
Confidence 111100 011 134578889999999999988776553
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=1.2e-05 Score=57.78 Aligned_cols=104 Identities=17% Similarity=0.161 Sum_probs=62.1
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchh--hccCC-CCCCe---eEEec-CCcccCC-CccE
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHA--VTDMP-QTDNL---KYIEG-DMFQFIP-PSDA 76 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~--~~~a~-~~~~~---~~~~~-d~~~~~~-~~D~ 76 (180)
|.+++ .++++.+|+|+||+.|.++...++...-..+.+.++.-. +.... ...++ ++.++ |+.+..+ .+|+
T Consensus 65 IdeK~--likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~~~Gv~~i~~~~G~Df~~~~~~~~Dv 142 (269)
T 2px2_A 65 LVERR--FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQSYGWNIVTMKSGVDVFYKPSEISDT 142 (269)
T ss_dssp HHHTT--SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCGGGSCCCCCSE
T ss_pred HHHcC--CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcccCCCceEEEeeccCCccCCCCCCCCE
Confidence 44454 388999999999999999998877521112234443221 11111 11344 45557 9976433 6999
Q ss_pred EEeccccccCCh-----HHHHHHHHHHHHhhccCCCCc-EEEEE
Q 030291 77 FFFKTVFHFFDD-----EDCLKLLKKCREAIASNGERG-KVLII 114 (180)
Q Consensus 77 v~~~~~l~~~~~-----~~~~~~l~~~~~~L~p~~~~G-~~~~~ 114 (180)
|+|-..-. ... .....+|.-+.++|+| || .+++-
T Consensus 143 VLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~---gG~~FvvK 182 (269)
T 2px2_A 143 LLCDIGES-SPSAEIEEQRTLRILEMVSDWLSR---GPKEFCIK 182 (269)
T ss_dssp EEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTT---CCSEEEEE
T ss_pred EEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhc---CCcEEEEE
Confidence 99855432 222 1122357777799999 78 56663
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=1.9e-06 Score=79.56 Aligned_cols=142 Identities=15% Similarity=0.151 Sum_probs=66.7
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCC-----CCeEEEeeCch-hhccCCCC---CCeeEEecCCccc----CCCccEEEecc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFP-----GIKCTVLDLPH-AVTDMPQT---DNLKYIEGDMFQF----IPPSDAFFFKT 81 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~-----~~~~~~~D~~~-~~~~a~~~---~~~~~~~~d~~~~----~~~~D~v~~~~ 81 (180)
+..+|||||.|+|..+..+++... ..+|+..|++. ..+.+++. -.++....|..++ ...||+|++..
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~ 1319 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNC 1319 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEEC
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEcc
Confidence 456999999999988777766642 23688999965 66666642 1222222233222 23599999999
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCC
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGF 161 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 161 (180)
++|-.++.. ..|+++++.|+| ||.+++.+...... +.......... ........+.++|.++|.++||
T Consensus 1320 vl~~t~~~~--~~l~~~~~lL~p---~G~l~~~e~~~~~~-----~g~~~~~~~~~--~r~~~~~~~~~~w~~~l~~~gf 1387 (2512)
T 2vz8_A 1320 ALATLGDPA--VAVGNMAATLKE---GGFLLLHTLLAGHP-----LGEMVGFLTSP--EQGGRHLLSQDQWESLFAGASL 1387 (2512)
T ss_dssp C-------------------------CCEEEEEEC---------------------------------CTTTTSSTTTTE
T ss_pred cccccccHH--HHHHHHHHhcCC---CcEEEEEecccccc-----ccccccccccc--cccCCcccCHHHHHHHHHhCCC
Confidence 998777776 679999999999 99988876432110 00000000000 0011234567889999999999
Q ss_pred eEEEEee
Q 030291 162 THYKIAP 168 (180)
Q Consensus 162 ~~~~~~~ 168 (180)
..+....
T Consensus 1388 ~~~~~~~ 1394 (2512)
T 2vz8_A 1388 HLVALKR 1394 (2512)
T ss_dssp EEEEEEE
T ss_pred ceeeecc
Confidence 9876643
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.08 E-value=3e-05 Score=64.27 Aligned_cols=101 Identities=11% Similarity=0.061 Sum_probs=68.2
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCC---CCeEEEeeCch-hhccC--CC----------CCCeeEEecCCcc----cCCC
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFP---GIKCTVLDLPH-AVTDM--PQ----------TDNLKYIEGDMFQ----FIPP 73 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~---~~~~~~~D~~~-~~~~a--~~----------~~~~~~~~~d~~~----~~~~ 73 (180)
+++.+|||.|||+|.+...+++..+ ..+++|+|+.+ ++..| +. .....+...|+.. ....
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 4578999999999999999988764 35799999954 65555 10 1223455666654 2346
Q ss_pred ccEEEecccc--ccCChH-------------------------HHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 74 SDAFFFKTVF--HFFDDE-------------------------DCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 74 ~D~v~~~~~l--~~~~~~-------------------------~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
||+|+++=-. ..-.+. ....++..+.+.|++ ||.+.+.-+.
T Consensus 400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKp---GGrLAfIlP~ 467 (878)
T 3s1s_A 400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQD---GTVISAIMPK 467 (878)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCT---TCEEEEEEET
T ss_pred CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCC---CcEEEEEECh
Confidence 9999995332 111111 122478889999999 8998887654
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=1.6e-05 Score=56.28 Aligned_cols=103 Identities=13% Similarity=0.107 Sum_probs=69.1
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhcc------CCCCCCeeEEec-CCcc-cCCCcc
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTD------MPQTDNLKYIEG-DMFQ-FIPPSD 75 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~------a~~~~~~~~~~~-d~~~-~~~~~D 75 (180)
.+.+.+. +.+..+|+||||++|.++...+....-.++.++|+..+-.. ...-..++|..+ |+.. +...+|
T Consensus 69 ei~ek~~--l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~~~D 146 (267)
T 3p8z_A 69 WFVERNM--VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPEKCD 146 (267)
T ss_dssp HHHHTTS--SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCCCCS
T ss_pred HHHHhcC--CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCcccc
Confidence 3455555 78888999999999999997777764557999998432111 112578899998 8744 223599
Q ss_pred EEEeccccccCChH--H---HHHHHHHHHHhhccCCCCcEEEE
Q 030291 76 AFFFKTVFHFFDDE--D---CLKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 76 ~v~~~~~l~~~~~~--~---~~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
.|+|-..- .-+++ + ...+|+-+.++|++ |-+++
T Consensus 147 tllcDIge-Ss~~~~vE~~RtlrvLela~~wL~~----~~fc~ 184 (267)
T 3p8z_A 147 TLLCDIGE-SSPSPTVEESRTIRVLKMVEPWLKN----NQFCI 184 (267)
T ss_dssp EEEECCCC-CCSCHHHHHHHHHHHHHHHGGGCSS----CEEEE
T ss_pred EEEEecCC-CCCChhhhhhHHHHHHHHHHHhccc----CCEEE
Confidence 99995443 22221 1 12366777899987 55555
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=5.4e-06 Score=63.07 Aligned_cols=96 Identities=14% Similarity=0.078 Sum_probs=68.0
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC--------------CCCeeEEecCCccc-------C
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ--------------TDNLKYIEGDMFQF-------I 71 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~--------------~~~~~~~~~d~~~~-------~ 71 (180)
.++++||=||.|.|..++.+++.. ..+++.+|+.+ +++.+++ .++++++..|.... .
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh~-~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~ 282 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKLK-PKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG 282 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTC-CSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCcHHHHHHHHhcC-CceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhcc
Confidence 457899999999999999998865 47999999954 7776653 24688889988542 2
Q ss_pred CCccEEEecccc-------ccCC-hHHHHHHHHHHHHhhccCCCCcEEEE
Q 030291 72 PPSDAFFFKTVF-------HFFD-DEDCLKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 72 ~~~D~v~~~~~l-------~~~~-~~~~~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
..||+|+.-..- .... ..-..++++.++++|+| ||.++.
T Consensus 283 ~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p---~GVlv~ 329 (381)
T 3c6k_A 283 REFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQ---DGKYFT 329 (381)
T ss_dssp CCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEE---EEEEEE
T ss_pred CceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCC---CCEEEE
Confidence 369999974221 1111 11234789999999999 555544
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=1.1e-05 Score=60.04 Aligned_cols=145 Identities=12% Similarity=0.097 Sum_probs=91.0
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCC---------CCCeeEEecCCcccC-----------CCc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ---------TDNLKYIEGDMFQFI-----------PPS 74 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~---------~~~~~~~~~d~~~~~-----------~~~ 74 (180)
+...|++||||.-.....+.. .++.+++-+|.|.++...++ ..+..++..|+.+.+ ...
T Consensus 102 g~~QvV~LGaGlDTra~Rl~~-~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~P 180 (310)
T 2uyo_A 102 GIRQFVILASGLDSRAYRLDW-PTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSAR 180 (310)
T ss_dssp TCCEEEEETCTTCCHHHHSCC-CTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSC
T ss_pred CCCeEEEeCCCCCchhhhccC-CCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCCC
Confidence 456799999999877655531 23578999998775554432 457788889986511 124
Q ss_pred cEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCch-hhhhhh-hccceee--E-ee-cCCccc-
Q 030291 75 DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDR-ELTESK-LLFDIFM--N-FN-VGGKER- 147 (180)
Q Consensus 75 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~--~-~~-~~~~~~- 147 (180)
-++++-++++|+++.....+++.+.+.+.| |..++.+...++..... ...... ....... . .. .+...+
T Consensus 181 t~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~----gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~ 256 (310)
T 2uyo_A 181 TAWLAEGLLMYLPATAQDGLFTEIGGLSAV----GSRIAVETSPLHGDEWREQMQLRFRRVSDALGFEQAVDVQELIYHD 256 (310)
T ss_dssp EEEEECSCGGGSCHHHHHHHHHHHHHTCCT----TCEEEEECCCTTCSHHHHHHHHHHHHHHC-----------CCTTCC
T ss_pred EEEEEechHhhCCHHHHHHHHHHHHHhCCC----CeEEEEEecCCCCcchhHHHHHHHHHHHHHcCCcCCCCccccccCC
Confidence 578889999999998888999999999888 55555555444321110 000000 0111111 0 00 122222
Q ss_pred C-HHHHHHHHHHcCCeEE
Q 030291 148 T-EQEWGSLFVNAGFTHY 164 (180)
Q Consensus 148 ~-~~~~~~~l~~aGf~~~ 164 (180)
+ .++..+.|.+.||+.+
T Consensus 257 ~~~~~~~~~f~~~G~~~~ 274 (310)
T 2uyo_A 257 ENRAVVADWLNRHGWRAT 274 (310)
T ss_dssp TTCCCHHHHHTTTTEEEE
T ss_pred CChHHHHHHHHHCcCccc
Confidence 5 7899999999999987
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=97.95 E-value=8.8e-06 Score=59.42 Aligned_cols=75 Identities=20% Similarity=0.152 Sum_probs=58.2
Q ss_pred cccccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC--CCCeeEEecCCccc--------
Q 030291 2 ATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ--TDNLKYIEGDMFQF-------- 70 (180)
Q Consensus 2 ~~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~--~~~~~~~~~d~~~~-------- 70 (180)
.+++++.+. ++++..++|.+||.|..+..+++. +.+++++|.++ +++.+++ ..+++++++++.+-
T Consensus 11 l~e~le~L~--~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~l~~~L~~~g 86 (285)
T 1wg8_A 11 YQEALDLLA--VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALG 86 (285)
T ss_dssp HHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTT
T ss_pred HHHHHHhhC--CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcchHHHHHHHcC
Confidence 455666666 678889999999999999999998 67999999954 7655542 25899999999541
Q ss_pred CCCccEEEec
Q 030291 71 IPPSDAFFFK 80 (180)
Q Consensus 71 ~~~~D~v~~~ 80 (180)
...+|.|++.
T Consensus 87 ~~~vDgIL~D 96 (285)
T 1wg8_A 87 VERVDGILAD 96 (285)
T ss_dssp CSCEEEEEEE
T ss_pred CCCcCEEEeC
Confidence 1358998874
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.92 E-value=6.3e-05 Score=55.03 Aligned_cols=103 Identities=11% Similarity=0.154 Sum_probs=66.9
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchh-hcc---CCC--CCCeeEEec-CCcc-cCCCccE
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHA-VTD---MPQ--TDNLKYIEG-DMFQ-FIPPSDA 76 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~-~~~---a~~--~~~~~~~~~-d~~~-~~~~~D~ 76 (180)
+.+.+. +.+..+||||||++|.++...+....-.++.++|+... -+. .++ ..-+.+... |+.. ....+|+
T Consensus 86 i~~~~~--l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~~D~ 163 (321)
T 3lkz_A 86 LVERRF--LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSECCDT 163 (321)
T ss_dssp HHHTTS--CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCCCSE
T ss_pred HHHhcC--CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCCCCE
Confidence 445555 77888999999999999997776654457999998432 110 111 234777776 7643 2235999
Q ss_pred EEeccccccCChHH-----HHHHHHHHHHhhccCCCC-cEEEE
Q 030291 77 FFFKTVFHFFDDED-----CLKLLKKCREAIASNGER-GKVLI 113 (180)
Q Consensus 77 v~~~~~l~~~~~~~-----~~~~l~~~~~~L~p~~~~-G~~~~ 113 (180)
|+|--. +.-+++. ...+|.-+.++|++ + |-+++
T Consensus 164 ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~---~~~~f~~ 202 (321)
T 3lkz_A 164 LLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHR---GPREFCV 202 (321)
T ss_dssp EEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTT---CCCEEEE
T ss_pred EEEECc-cCCCChhhhhhHHHHHHHHHHHHhcc---CCCcEEE
Confidence 998555 4444322 12367777899998 5 65555
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.91 E-value=3.6e-05 Score=61.60 Aligned_cols=99 Identities=11% Similarity=0.070 Sum_probs=70.0
Q ss_pred CCCeEEEeCCcccHHHHHHHHHC---CCCeEEEeeCch-hhccCCC------C--CCeeEEecCCccc------CCCccE
Q 030291 15 GLRSMVDVGGGTGAFARIISEAF---PGIKCTVLDLPH-AVTDMPQ------T--DNLKYIEGDMFQF------IPPSDA 76 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~---~~~~~~~~D~~~-~~~~a~~------~--~~~~~~~~d~~~~------~~~~D~ 76 (180)
.+.+|+|.+||+|.+...+.+.. +...++|+|+.. +...|+. . .++.+.++|.+.. ...||+
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~ 300 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG 300 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence 56799999999999988887774 357899999954 6665542 1 4678899998753 125999
Q ss_pred EEecccc--cc-----------------CC---hHHHHHHHHHHHHhhc-cCCCCcEEEEEEee
Q 030291 77 FFFKTVF--HF-----------------FD---DEDCLKLLKKCREAIA-SNGERGKVLIIDIV 117 (180)
Q Consensus 77 v~~~~~l--~~-----------------~~---~~~~~~~l~~~~~~L~-p~~~~G~~~~~~~~ 117 (180)
|+++=-+ .. ++ +.. -.++..+.+.|+ | ||++.++-+.
T Consensus 301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~-~~Fl~~~l~~Lk~~---gGr~a~VlP~ 360 (542)
T 3lkd_A 301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKAD-FAFLLHGYYHLKQD---NGVMAIVLPH 360 (542)
T ss_dssp EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCH-HHHHHHHHHTBCTT---TCEEEEEEET
T ss_pred EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhh-HHHHHHHHHHhCCC---ceeEEEEecc
Confidence 9985111 10 11 011 148999999999 9 8998887653
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.85 E-value=3.8e-06 Score=67.25 Aligned_cols=97 Identities=12% Similarity=0.039 Sum_probs=64.2
Q ss_pred CeEEEeCCcccHHHHHHHHHCC---------------CCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccC--
Q 030291 17 RSMVDVGGGTGAFARIISEAFP---------------GIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFI-- 71 (180)
Q Consensus 17 ~~iLdiG~G~G~~~~~l~~~~~---------------~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~-- 71 (180)
.+|+|.+||+|.+...+.+... ...++|+|+.. +...|+. ..++.+.++|.+...
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~ 325 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQH 325 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSC
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCccc
Confidence 4999999999998777654321 45799999954 6666552 233444778875522
Q ss_pred --CCccEEEecccccc-------------------------CChH--HHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 72 --PPSDAFFFKTVFHF-------------------------FDDE--DCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 72 --~~~D~v~~~~~l~~-------------------------~~~~--~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
..||+|+++=-+.. ++.. ..-.++..+.+.|+| ||.+.++-+
T Consensus 326 ~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~---gGr~aiVlP 396 (544)
T 3khk_A 326 PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAP---TGSMALLLA 396 (544)
T ss_dssp TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhcc---CceEEEEec
Confidence 36999998522221 1110 011589999999999 898887754
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00073 Score=50.02 Aligned_cols=123 Identities=19% Similarity=0.196 Sum_probs=71.2
Q ss_pred CCeEEEeCCcccHHHHHH----HHHCCCCeE--EEeeCchh--hccCCC-----------------CCC--eeEEecCCc
Q 030291 16 LRSMVDVGGGTGAFARII----SEAFPGIKC--TVLDLPHA--VTDMPQ-----------------TDN--LKYIEGDMF 68 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l----~~~~~~~~~--~~~D~~~~--~~~a~~-----------------~~~--~~~~~~d~~ 68 (180)
.-+|||+|-|+|.+.... .+..|..++ +.+|.... ...... ..+ .++..+|+.
T Consensus 97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~ 176 (308)
T 3vyw_A 97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDAR 176 (308)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHH
T ss_pred CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHH
Confidence 457999999999876543 244666555 55553110 000000 233 356678875
Q ss_pred cc---CC--CccEEEeccc-cccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeec
Q 030291 69 QF---IP--PSDAFFFKTV-FHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNV 142 (180)
Q Consensus 69 ~~---~~--~~D~v~~~~~-l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (180)
+. .. .+|+++.-.. -..-|+--...+++++++.++| ||. +.+
T Consensus 177 ~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~p---gg~-laT---------------------------- 224 (308)
T 3vyw_A 177 KRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDE---KGY-WVS---------------------------- 224 (308)
T ss_dssp HHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEE---EEE-EEE----------------------------
T ss_pred HHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCC---CcE-EEE----------------------------
Confidence 42 22 5899887432 2222222244889999999999 544 331
Q ss_pred CCcccCHHHHHHHHHHcCCeEEEEeecCCce
Q 030291 143 GGKERTEQEWGSLFVNAGFTHYKIAPIFGIK 173 (180)
Q Consensus 143 ~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~ 173 (180)
+.....++..|+++||++.++--.++..
T Consensus 225 ---Ytaag~VRR~L~~aGF~V~k~~G~g~KR 252 (308)
T 3vyw_A 225 ---YSSSLSVRKSLLTLGFKVGSSREIGRKR 252 (308)
T ss_dssp ---SCCCHHHHHHHHHTTCEEEEEECC---C
T ss_pred ---EeCcHHHHHHHHHCCCEEEecCCCCCCC
Confidence 1123557788999999988877666543
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0006 Score=49.97 Aligned_cols=94 Identities=14% Similarity=0.095 Sum_probs=60.6
Q ss_pred ccCCCeEEEeCC------cccHHHHHHHHHCCC-CeEEEeeCchhhccCCCCCCeeEEecCCcc--cCCCccEEEecccc
Q 030291 13 FQGLRSMVDVGG------GTGAFARIISEAFPG-IKCTVLDLPHAVTDMPQTDNLKYIEGDMFQ--FIPPSDAFFFKTVF 83 (180)
Q Consensus 13 ~~~~~~iLdiG~------G~G~~~~~l~~~~~~-~~~~~~D~~~~~~~a~~~~~~~~~~~d~~~--~~~~~D~v~~~~~l 83 (180)
.+.+.+|||+|+ .+|.. .+.+..|. ..++++|+.++...+ . .++++|... ....+|+|++-..-
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~sda----~-~~IqGD~~~~~~~~k~DLVISDMAP 179 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVSDA----D-STLIGDCATVHTANKWDLIISDMYD 179 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBCSS----S-EEEESCGGGEEESSCEEEEEECCCC
T ss_pred ecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccccCC----C-eEEEccccccccCCCCCEEEecCCC
Confidence 467899999996 66663 44555775 699999997644322 2 448898744 23469999983321
Q ss_pred ---ccCCh-H-----HHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 84 ---HFFDD-E-----DCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 84 ---~~~~~-~-----~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
.+... . -...++.-+.+.|+| ||.+++--+
T Consensus 180 NtTG~~D~d~~Rs~~L~ElALdfA~~~Lkp---GGsFvVKVF 218 (344)
T 3r24_A 180 PRTKHVTKENDSKEGFFTYLCGFIKQKLAL---GGSIAVKIT 218 (344)
T ss_dssp TTSCSSCSCCCCCCTHHHHHHHHHHHHEEE---EEEEEEEEC
T ss_pred CcCCccccchhHHHHHHHHHHHHHHHhCcC---CCEEEEEEe
Confidence 11111 1 244667778899999 777766443
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00034 Score=51.32 Aligned_cols=94 Identities=11% Similarity=0.152 Sum_probs=64.3
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHC-----CCCeEEEeeCch-h--------------------------hccCCC-----
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAF-----PGIKCTVLDLPH-A--------------------------VTDMPQ----- 56 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~-----~~~~~~~~D~~~-~--------------------------~~~a~~----- 56 (180)
..+.+|||+|+..|..+..+++.. ++.+++++|.-+ + .+.+++
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 457899999999999888876553 477899999521 1 111221
Q ss_pred ---CCCeeEEecCCcccC-----CCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 57 ---TDNLKYIEGDMFQFI-----PPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 57 ---~~~~~~~~~d~~~~~-----~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
..+++++.+++.+.+ ..+|+|+.-.-.+ .. ....|+.+...|+| || ++++|
T Consensus 185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y--~~--~~~~Le~~~p~L~p---GG-iIv~D 243 (282)
T 2wk1_A 185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY--ES--TWDTLTNLYPKVSV---GG-YVIVD 243 (282)
T ss_dssp TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSH--HH--HHHHHHHHGGGEEE---EE-EEEES
T ss_pred CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc--cc--HHHHHHHHHhhcCC---CE-EEEEc
Confidence 278999999996522 2599998865421 11 22679999999999 45 55544
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00053 Score=52.07 Aligned_cols=109 Identities=12% Similarity=0.049 Sum_probs=76.0
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------------CCCeeEEecCCcc----cCCCcc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------------TDNLKYIEGDMFQ----FIPPSD 75 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------------~~~~~~~~~d~~~----~~~~~D 75 (180)
.+++.+|||+.+|.|.-+..+++..++..+++.|++. .+...++ ..++.+.+.|... ....||
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD 225 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD 225 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence 4678899999999999999998887666899999854 4433321 3578888888754 123699
Q ss_pred EEEe----cc----cccc-------CCh-------HHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCc
Q 030291 76 AFFF----KT----VFHF-------FDD-------EDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDD 124 (180)
Q Consensus 76 ~v~~----~~----~l~~-------~~~-------~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~ 124 (180)
.|++ ++ ++.. ... ..+.++|.+..+.||| ||.++-+.......+.+
T Consensus 226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkp---GG~LVYsTCSl~~~ENE 293 (359)
T 4fzv_A 226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKP---GGHVVYSTCSLSHLQNE 293 (359)
T ss_dssp EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEE---EEEEEEEESCCCTTTTH
T ss_pred EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCC---CcEEEEEeCCCchhhCH
Confidence 9996 22 1111 111 1245789999999999 88888887766555444
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0013 Score=54.17 Aligned_cols=148 Identities=11% Similarity=0.066 Sum_probs=98.3
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCC--------CCeEEEeeCchhhccCCC------------------------------
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFP--------GIKCTVLDLPHAVTDMPQ------------------------------ 56 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~--------~~~~~~~D~~~~~~~a~~------------------------------ 56 (180)
+...|+-+|||.-....++....+ +.+++-+|.|++++.-++
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFLT 186 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCEE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHHhhcccccccccccccccccc
Confidence 467899999999998888876644 677888888774433221
Q ss_pred CCCeeEEecCCccc-------------CCC-ccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCC
Q 030291 57 TDNLKYIEGDMFQF-------------IPP-SDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKE 122 (180)
Q Consensus 57 ~~~~~~~~~d~~~~-------------~~~-~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~ 122 (180)
..+..++..|+.+. .+. .-++++-+++.|++.+...++|+.+.+. + ++.+++.+...+...
T Consensus 187 s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~~--~---~~~~~~~e~~~~~~~ 261 (695)
T 2zwa_A 187 TPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSKM--E---NSHFIILEQLIPKGP 261 (695)
T ss_dssp CSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHTS--S---SEEEEEEEECCTTCT
T ss_pred CCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhhC--C---CceEEEEEeecCCCC
Confidence 13788889999651 122 4477888999999999988999988854 5 688888888766443
Q ss_pred Cchhhh---hhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEEEEeec
Q 030291 123 DDRELT---ESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPI 169 (180)
Q Consensus 123 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 169 (180)
.+.... ......... + ..-....+.++..+.|.+.||+.+...+.
T Consensus 262 ~d~f~~~m~~~~~~~g~~-l-~~~~~~~~~~~~~~~~~~~Gw~~v~~~~~ 309 (695)
T 2zwa_A 262 FEPFSKQMLAHFKRNDSP-L-QSVLKYNTIESQVQRFNKLGFAYVNVGDM 309 (695)
T ss_dssp TSHHHHHHHHHHHHTTCC-C-CGGGTCCSHHHHHHHHHHTTCCEEEEEEH
T ss_pred CChHHHHHHHHHHHcCCC-C-CccccCCCHHHHHHHHHHCCCCCcceeeH
Confidence 332111 000000000 0 00113457899999999999987766544
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.32 E-value=8.8e-05 Score=56.16 Aligned_cols=55 Identities=13% Similarity=0.182 Sum_probs=42.5
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCC---CCCCeeEEecCCcc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMP---QTDNLKYIEGDMFQ 69 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~---~~~~~~~~~~d~~~ 69 (180)
+...|||||.|.|.+|..|++.....+++++|+.. .+...+ ..++++++.+|++.
T Consensus 58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~ 116 (353)
T 1i4w_A 58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 116 (353)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccc
Confidence 35889999999999999999874345799999843 433332 25789999999964
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00049 Score=51.52 Aligned_cols=77 Identities=14% Similarity=0.132 Sum_probs=59.2
Q ss_pred cccccccccccccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCch-hhccCCC--CCCeeEEecCCcc------c-
Q 030291 2 ATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPH-AVTDMPQ--TDNLKYIEGDMFQ------F- 70 (180)
Q Consensus 2 ~~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~-~~~~a~~--~~~~~~~~~d~~~------~- 70 (180)
.+++++.+. .+++..++|..+|.|..+..+++.. |..+++++|..+ +++.+++ ..+++++++++.+ .
T Consensus 46 l~Evl~~L~--i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~l~~~L~~~ 123 (347)
T 3tka_A 46 LDEAVNGLN--IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSALGEYVAER 123 (347)
T ss_dssp THHHHHHTC--CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGGHHHHHHHT
T ss_pred HHHHHHhhC--CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHhc
Confidence 456667776 7788999999999999999999884 778999999954 7776643 4688888888844 1
Q ss_pred -CC-CccEEEec
Q 030291 71 -IP-PSDAFFFK 80 (180)
Q Consensus 71 -~~-~~D~v~~~ 80 (180)
.. .+|.|+..
T Consensus 124 g~~~~vDgILfD 135 (347)
T 3tka_A 124 DLIGKIDGILLD 135 (347)
T ss_dssp TCTTCEEEEEEE
T ss_pred CCCCcccEEEEC
Confidence 11 47877764
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0002 Score=52.95 Aligned_cols=41 Identities=15% Similarity=-0.001 Sum_probs=34.4
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ 56 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~ 56 (180)
.++..|||++||+|..+..+.+. +.+++++|+++ +++.+++
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~~ 275 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAKE 275 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHH
Confidence 46789999999999999998887 67899999965 7776653
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0051 Score=49.15 Aligned_cols=101 Identities=15% Similarity=0.102 Sum_probs=62.5
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHC-------------CCCeEEEeeCch-hhccCCC------CCCeeEEecCCccc--
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAF-------------PGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQF-- 70 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~-------------~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~-- 70 (180)
...+.+|+|-+||+|.+.....+.. ....++|+|+.. +...|+- .....+.++|.+..
T Consensus 215 p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~~ 294 (530)
T 3ufb_A 215 PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFPL 294 (530)
T ss_dssp CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSCG
T ss_pred cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccccccccccCch
Confidence 4556799999999999887665431 134689999843 4444431 23334566666431
Q ss_pred -----CCCccEEEeccccc---------cCC-----hHHHHHHHHHHHHhhc-------cCCCCcEEEEEEe
Q 030291 71 -----IPPSDAFFFKTVFH---------FFD-----DEDCLKLLKKCREAIA-------SNGERGKVLIIDI 116 (180)
Q Consensus 71 -----~~~~D~v~~~~~l~---------~~~-----~~~~~~~l~~~~~~L~-------p~~~~G~~~~~~~ 116 (180)
...||+|+++=-+. .++ ......++..+.+.|+ + ||++.++-+
T Consensus 295 ~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~---gGr~avVlP 363 (530)
T 3ufb_A 295 REMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDN---GGRAAVVVP 363 (530)
T ss_dssp GGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSS---CCEEEEEEE
T ss_pred hhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCC---CceEEEEec
Confidence 12599999863321 111 0112256788888886 6 888888765
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.027 Score=37.23 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=40.8
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCCCCCeeEEecCCcc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQ 69 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~d~~~ 69 (180)
.-..-|||+|-|.|..-..+++.+|+.+++++|-.-......-.+.-.++.+|+.+
T Consensus 39 ~~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~hp~~~P~~e~~ilGdi~~ 94 (174)
T 3iht_A 39 GLSGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVASHPDSTPPEAQLILGDIRE 94 (174)
T ss_dssp TCCSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCCGGGCCCGGGEEESCHHH
T ss_pred CCCCceEEecCCCChhHHHHHHhCCCCcEEEEEeeeccCCCCCCchHheecccHHH
Confidence 34567999999999999999999999999999942111111114455678888855
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0053 Score=44.36 Aligned_cols=39 Identities=18% Similarity=0.131 Sum_probs=32.4
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccC
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDM 54 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a 54 (180)
+++..|||..||+|..+....+. +.+++++|+++ ..+.+
T Consensus 211 ~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~ 250 (260)
T 1g60_A 211 NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQA 250 (260)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHH
Confidence 57789999999999999988877 67899999955 55444
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=94.91 E-value=0.13 Score=42.34 Aligned_cols=119 Identities=17% Similarity=0.125 Sum_probs=71.0
Q ss_pred CCCeEEEeCCcccHHHHHHHHHC-------CC-----CeEEEeeC-c--h-hhccCCC----------------------
Q 030291 15 GLRSMVDVGGGTGAFARIISEAF-------PG-----IKCTVLDL-P--H-AVTDMPQ---------------------- 56 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~-------~~-----~~~~~~D~-~--~-~~~~a~~---------------------- 56 (180)
+.-+|+|+|-|+|.+...+.+.+ |. .+++.+|. | . .+.++.+
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 44689999999999877765542 22 56888886 2 2 2222100
Q ss_pred ---------CCCeeEEecCCcc---cC-----CCccEEEeccc-cccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeee
Q 030291 57 ---------TDNLKYIEGDMFQ---FI-----PPSDAFFFKTV-FHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVI 118 (180)
Q Consensus 57 ---------~~~~~~~~~d~~~---~~-----~~~D~v~~~~~-l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~ 118 (180)
.-.+++..+|+.+ .+ ..+|.++.-.. -..-++--...++..+.+.++| ||.+.- -
T Consensus 138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~---g~~~~t-~--- 210 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRP---GGTFST-F--- 210 (689)
T ss_dssp EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEE---EEEEEE-S---
T ss_pred ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCC---CCEEEe-c---
Confidence 1245677788754 22 35899887432 2222222234789999999999 544332 1
Q ss_pred CCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEEEEee
Q 030291 119 DEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAP 168 (180)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 168 (180)
......++.+.++||.+.....
T Consensus 211 ----------------------------~~~~~vr~~l~~aGf~~~~~~~ 232 (689)
T 3pvc_A 211 ----------------------------TAAGFVRRGLQQAGFNVTKVKG 232 (689)
T ss_dssp ----------------------------CCCHHHHHHHHHTTCEEEEEEC
T ss_pred ----------------------------cCcHHHHHHHHhCCeEEEeccC
Confidence 0114567778888888776553
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.28 Score=40.22 Aligned_cols=89 Identities=19% Similarity=0.179 Sum_probs=52.7
Q ss_pred CCeEEEeCCcccHHHHHHHHHC-------C-----CCeEEEeeC---ch-hhccCCC-----------------------
Q 030291 16 LRSMVDVGGGTGAFARIISEAF-------P-----GIKCTVLDL---PH-AVTDMPQ----------------------- 56 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~~-------~-----~~~~~~~D~---~~-~~~~a~~----------------------- 56 (180)
.-+|+|+|-|+|.+.....+.+ | ..+++++|. +. .+.++-+
T Consensus 67 ~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (676)
T 3ps9_A 67 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC 146 (676)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEE
T ss_pred ceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCc
Confidence 3589999999999877665442 2 245788886 32 3321100
Q ss_pred --------CCCeeEEecCCcc---cC-----CCccEEEecccccc-CChHHHHHHHHHHHHhhcc
Q 030291 57 --------TDNLKYIEGDMFQ---FI-----PPSDAFFFKTVFHF-FDDEDCLKLLKKCREAIAS 104 (180)
Q Consensus 57 --------~~~~~~~~~d~~~---~~-----~~~D~v~~~~~l~~-~~~~~~~~~l~~~~~~L~p 104 (180)
...+++..+|+.+ .. ..+|+++.-..--. -++--...++..+.+.++|
T Consensus 147 ~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~ 211 (676)
T 3ps9_A 147 HRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARP 211 (676)
T ss_dssp EEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEE
T ss_pred eEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCC
Confidence 1234455667644 11 35899887442111 1221234789999999999
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.054 Score=40.65 Aligned_cols=92 Identities=15% Similarity=0.094 Sum_probs=61.6
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcccCCCccEEEeccccccCChHH
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDDED 90 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~~~ 90 (180)
++++++||-+|+|. |..+..+++.. +++++++|.++ ..+.+++..--..+ .+.......+|+|+-...- +
T Consensus 174 ~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~v~-~~~~~~~~~~D~vid~~g~-----~- 245 (348)
T 3two_A 174 VTKGTKVGVAGFGGLGSMAVKYAVAM-GAEVSVFARNEHKKQDALSMGVKHFY-TDPKQCKEELDFIISTIPT-----H- 245 (348)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHT-TCEEEEECSSSTTHHHHHHTTCSEEE-SSGGGCCSCEEEEEECCCS-----C-
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHhcCCCeec-CCHHHHhcCCCEEEECCCc-----H-
Confidence 67889999999876 78888888876 77999999754 56666543222222 3321111269998864332 1
Q ss_pred HHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 91 CLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 91 ~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
..+....+.|++ +|.+++....
T Consensus 246 --~~~~~~~~~l~~---~G~iv~~G~~ 267 (348)
T 3two_A 246 --YDLKDYLKLLTY---NGDLALVGLP 267 (348)
T ss_dssp --CCHHHHHTTEEE---EEEEEECCCC
T ss_pred --HHHHHHHHHHhc---CCEEEEECCC
Confidence 247778899999 8999887543
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=94.57 E-value=0.11 Score=39.77 Aligned_cols=97 Identities=14% Similarity=0.023 Sum_probs=63.0
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCC-eEEEeeCch-hhccCCCCCCeeEEec---CC-ccc-----CC-CccEEEe
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGI-KCTVLDLPH-AVTDMPQTDNLKYIEG---DM-FQF-----IP-PSDAFFF 79 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~-~~~~~D~~~-~~~~a~~~~~~~~~~~---d~-~~~-----~~-~~D~v~~ 79 (180)
++++++||-+|+|. |.++..+++.. ++ +++++|.++ .++.+++..- +.+.. |. .+. .+ .+|+|+-
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~lGa-~~i~~~~~~~~~~~~~~~~~g~g~Dvvid 260 (398)
T 2dph_A 183 VKPGSHVYIAGAGPVGRCAAAGARLL-GAACVIVGDQNPERLKLLSDAGF-ETIDLRNSAPLRDQIDQILGKPEVDCGVD 260 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHH-TCSEEEEEESCHHHHHHHHTTTC-EEEETTSSSCHHHHHHHHHSSSCEEEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHcCC-cEEcCCCcchHHHHHHHHhCCCCCCEEEE
Confidence 67789999999877 88888888876 66 899999854 6666665322 33321 21 110 12 5999886
Q ss_pred cccccc---------CChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 80 KTVFHF---------FDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 80 ~~~l~~---------~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
...-.. .+. . ..+....++|++ +|.+++....
T Consensus 261 ~~g~~~~~~~~~~~~~~~-~--~~~~~~~~~l~~---gG~iv~~G~~ 301 (398)
T 2dph_A 261 AVGFEAHGLGDEANTETP-N--GALNSLFDVVRA---GGAIGIPGIY 301 (398)
T ss_dssp CSCTTCBCSGGGTTSBCT-T--HHHHHHHHHEEE---EEEEECCSCC
T ss_pred CCCCcccccccccccccc-H--HHHHHHHHHHhc---CCEEEEeccc
Confidence 443221 111 1 358889999999 8988876543
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=94.48 E-value=0.18 Score=36.29 Aligned_cols=95 Identities=16% Similarity=0.174 Sum_probs=62.0
Q ss_pred cCCCeEEEeCCcccHHHHHHHHH-------CCCCeEEEeeC----chh--h----------------------cc-----
Q 030291 14 QGLRSMVDVGGGTGAFARIISEA-------FPGIKCTVLDL----PHA--V----------------------TD----- 53 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~-------~~~~~~~~~D~----~~~--~----------------------~~----- 53 (180)
+-+..|+|+|+-.|..+..++.. .+.-+++++|. ++. . ..
T Consensus 68 ~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~ 147 (257)
T 3tos_A 68 DVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAH 147 (257)
T ss_dssp TSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHH
T ss_pred CCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHH
Confidence 55789999999999987775542 35678999993 210 0 00
Q ss_pred --CCC----CCCeeEEecCCccc-------CC--CccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 54 --MPQ----TDNLKYIEGDMFQF-------IP--PSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 54 --a~~----~~~~~~~~~d~~~~-------~~--~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
.+. ..+++++.+++.+. .+ .+|+++.-.-.+ .... ..++.+...|+| ||.+++-+
T Consensus 148 ~~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~Y--~~t~--~~le~~~p~l~~---GGvIv~DD 217 (257)
T 3tos_A 148 ECSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDLY--EPTK--AVLEAIRPYLTK---GSIVAFDE 217 (257)
T ss_dssp HTTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCCH--HHHH--HHHHHHGGGEEE---EEEEEESS
T ss_pred hhhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCccc--chHH--HHHHHHHHHhCC---CcEEEEcC
Confidence 011 37899999998552 12 489988865421 2222 679999999999 55555533
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=94.34 E-value=0.17 Score=37.66 Aligned_cols=92 Identities=14% Similarity=0.163 Sum_probs=61.4
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEec---CCcc----cCCCccEEEecccc
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEG---DMFQ----FIPPSDAFFFKTVF 83 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~---d~~~----~~~~~D~v~~~~~l 83 (180)
.+++++||-+|+|. |..+..+++.. +++++++|.++ ..+.+++..--..+.. |..+ ..+.+|+++-...
T Consensus 164 ~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~g- 241 (340)
T 3s2e_A 164 TRPGQWVVISGIGGLGHVAVQYARAM-GLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAV- 241 (340)
T ss_dssp CCTTSEEEEECCSTTHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESSC-
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeCC-
Confidence 67788999999876 88888888887 77999999854 6666654222122221 1111 0125888876432
Q ss_pred ccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 84 HFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
.. ..+..+.+.|++ +|.+++...
T Consensus 242 ----~~---~~~~~~~~~l~~---~G~iv~~G~ 264 (340)
T 3s2e_A 242 ----SP---KAFSQAIGMVRR---GGTIALNGL 264 (340)
T ss_dssp ----CH---HHHHHHHHHEEE---EEEEEECSC
T ss_pred ----CH---HHHHHHHHHhcc---CCEEEEeCC
Confidence 11 568889999999 898888653
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=94.29 E-value=0.44 Score=35.79 Aligned_cols=67 Identities=9% Similarity=0.093 Sum_probs=46.6
Q ss_pred CCeEEEeCCcccHHHHHHHHHCCC-CeEEEeeCch-hhccCCC-CCCeeEEecCCcccC----C--CccEEEeccc
Q 030291 16 LRSMVDVGGGTGAFARIISEAFPG-IKCTVLDLPH-AVTDMPQ-TDNLKYIEGDMFQFI----P--PSDAFFFKTV 82 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~~~~-~~~~~~D~~~-~~~~a~~-~~~~~~~~~d~~~~~----~--~~D~v~~~~~ 82 (180)
..+++|+-||.|.++..+.+..-. ..+.++|..+ +.+..+. .++..+.++|+.+.. + .+|+++...-
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpP 77 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPP 77 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCC
Confidence 357999999999999999888421 2578999854 5444443 344567788885522 2 5899997543
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.09 E-value=0.13 Score=38.87 Aligned_cols=93 Identities=18% Similarity=0.181 Sum_probs=60.5
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCC-eEEEeeCch-hhccCCCCCCeeEEec---CCcc---c-C-CCccEEEecc
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGI-KCTVLDLPH-AVTDMPQTDNLKYIEG---DMFQ---F-I-PPSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~-~~~~~D~~~-~~~~a~~~~~~~~~~~---d~~~---~-~-~~~D~v~~~~ 81 (180)
++++++||-+|+|. |..+..+++.. ++ +++++|.++ .++.+++..--..+.. |+.+ . . +.+|+|+-..
T Consensus 188 ~~~g~~VlV~GaG~vG~~a~qlak~~-Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid~~ 266 (371)
T 1f8f_A 188 VTPASSFVTWGAGAVGLSALLAAKVC-GASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALEST 266 (371)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHH-TCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEEEECC
Confidence 67789999999886 78888888776 55 689999754 5666554211112221 1111 0 1 2589988643
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
. .. ..+....+.|++ +|.+++....
T Consensus 267 g-----~~---~~~~~~~~~l~~---~G~iv~~G~~ 291 (371)
T 1f8f_A 267 G-----SP---EILKQGVDALGI---LGKIAVVGAP 291 (371)
T ss_dssp C-----CH---HHHHHHHHTEEE---EEEEEECCCC
T ss_pred C-----CH---HHHHHHHHHHhc---CCEEEEeCCC
Confidence 3 11 458889999999 8998887543
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=94.08 E-value=0.25 Score=37.08 Aligned_cols=92 Identities=14% Similarity=0.149 Sum_probs=60.5
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCC-eEEEeeCch-hhccCCCCCCeeEEecC------Cccc-----CCCccEEE
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGI-KCTVLDLPH-AVTDMPQTDNLKYIEGD------MFQF-----IPPSDAFF 78 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~-~~~~~D~~~-~~~~a~~~~~~~~~~~d------~~~~-----~~~~D~v~ 78 (180)
++++++||-+|+|. |..+..+++.. ++ +++++|.++ .++.+++..--..+..+ ..+. ...+|+|+
T Consensus 169 ~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vi 247 (356)
T 1pl8_A 169 VTLGHKVLVCGAGPIGMVTLLVAKAM-GAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTI 247 (356)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEE
Confidence 56788999999876 78888888876 66 899999854 55555542211222221 1110 13589988
Q ss_pred eccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 79 FKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 79 ~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
-... .. ..+....++|++ +|.+++...
T Consensus 248 d~~g-----~~---~~~~~~~~~l~~---~G~iv~~G~ 274 (356)
T 1pl8_A 248 ECTG-----AE---ASIQAGIYATRS---GGTLVLVGL 274 (356)
T ss_dssp ECSC-----CH---HHHHHHHHHSCT---TCEEEECSC
T ss_pred ECCC-----Ch---HHHHHHHHHhcC---CCEEEEEec
Confidence 6433 22 457888899999 999988654
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.08 E-value=0.52 Score=35.65 Aligned_cols=93 Identities=12% Similarity=0.097 Sum_probs=61.3
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCC-eEEEeeCch-hhccCCCCCCeeEEec-----CCcc-----cCCCccEEEe
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGI-KCTVLDLPH-AVTDMPQTDNLKYIEG-----DMFQ-----FIPPSDAFFF 79 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~-~~~~~D~~~-~~~~a~~~~~~~~~~~-----d~~~-----~~~~~D~v~~ 79 (180)
++++.+||=+|+|. |.++..+++.. ++ +++++|.++ .++.+++..--.++.. ++.+ ..+.+|+|+-
T Consensus 191 ~~~g~~VlV~GaG~vG~~a~q~a~~~-Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid 269 (378)
T 3uko_A 191 VEPGSNVAIFGLGTVGLAVAEGAKTA-GASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFE 269 (378)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHH-TCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEE
Confidence 67788999999875 77888887776 55 799999744 6666665322222221 1111 0125999886
Q ss_pred ccccccCChHHHHHHHHHHHHhhccCCCC-cEEEEEEee
Q 030291 80 KTVFHFFDDEDCLKLLKKCREAIASNGER-GKVLIIDIV 117 (180)
Q Consensus 80 ~~~l~~~~~~~~~~~l~~~~~~L~p~~~~-G~~~~~~~~ 117 (180)
... .+ ..+..+.+.|++ + |.+++....
T Consensus 270 ~~g-----~~---~~~~~~~~~l~~---g~G~iv~~G~~ 297 (378)
T 3uko_A 270 CIG-----NV---SVMRAALECCHK---GWGTSVIVGVA 297 (378)
T ss_dssp CSC-----CH---HHHHHHHHTBCT---TTCEEEECSCC
T ss_pred CCC-----CH---HHHHHHHHHhhc---cCCEEEEEccc
Confidence 433 22 558889999999 8 888887643
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=93.19 E-value=0.42 Score=32.44 Aligned_cols=91 Identities=9% Similarity=0.065 Sum_probs=55.4
Q ss_pred ccCCCeEEEeCC--cccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEec-C--Ccc----cC--CCccEEEec
Q 030291 13 FQGLRSMVDVGG--GTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEG-D--MFQ----FI--PPSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~--G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~-d--~~~----~~--~~~D~v~~~ 80 (180)
++++++||-.|+ |.|..+..++... +++++++|.++ ..+.+++......... + ..+ .. ..+|+++.+
T Consensus 36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~ 114 (198)
T 1pqw_A 36 LSPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNS 114 (198)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEEC
T ss_pred CCCCCEEEEeeCCChHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCCCEEeeCCcHHHHHHHHHHhCCCCCeEEEEC
Confidence 667889999994 4466666655544 67899999854 4544443211111111 1 101 01 248998865
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
.. . ..++.+.+.|++ +|.++....
T Consensus 115 ~g-----~----~~~~~~~~~l~~---~G~~v~~g~ 138 (198)
T 1pqw_A 115 LA-----G----EAIQRGVQILAP---GGRFIELGK 138 (198)
T ss_dssp CC-----T----HHHHHHHHTEEE---EEEEEECSC
T ss_pred Cc-----h----HHHHHHHHHhcc---CCEEEEEcC
Confidence 42 1 347888999999 898887654
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=93.16 E-value=0.13 Score=38.89 Aligned_cols=94 Identities=13% Similarity=0.176 Sum_probs=60.7
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCC-eEEEeeCch-hhccCCCCCCeeEEe---cCCcc---c---C--CCccEEE
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGI-KCTVLDLPH-AVTDMPQTDNLKYIE---GDMFQ---F---I--PPSDAFF 78 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~-~~~~~D~~~-~~~~a~~~~~~~~~~---~d~~~---~---~--~~~D~v~ 78 (180)
++++.+||=+|+|. |.++..+++.. ++ +++++|.++ ..+.+++..--..+. .|..+ . . +.+|+|+
T Consensus 180 ~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvi 258 (370)
T 4ej6_A 180 IKAGSTVAILGGGVIGLLTVQLARLA-GATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVI 258 (370)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEE
Confidence 57788999999876 77888888876 66 899999854 555555421111111 12111 1 1 2599988
Q ss_pred eccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeee
Q 030291 79 FKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVI 118 (180)
Q Consensus 79 ~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~ 118 (180)
-... .. ..+..+.+.|++ +|.+++.....
T Consensus 259 d~~G-----~~---~~~~~~~~~l~~---~G~vv~~G~~~ 287 (370)
T 4ej6_A 259 ECAG-----VA---ETVKQSTRLAKA---GGTVVILGVLP 287 (370)
T ss_dssp ECSC-----CH---HHHHHHHHHEEE---EEEEEECSCCC
T ss_pred ECCC-----CH---HHHHHHHHHhcc---CCEEEEEeccC
Confidence 6432 12 458889999999 89988876543
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=92.75 E-value=0.59 Score=34.62 Aligned_cols=88 Identities=13% Similarity=0.064 Sum_probs=54.8
Q ss_pred CeEEEeCCcc-c-HHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcc-cCCCccEEEeccccccCChHHHH
Q 030291 17 RSMVDVGGGT-G-AFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQ-FIPPSDAFFFKTVFHFFDDEDCL 92 (180)
Q Consensus 17 ~~iLdiG~G~-G-~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~-~~~~~D~v~~~~~l~~~~~~~~~ 92 (180)
.+|.=||+|. | .++..+.+.....+++++|.+. .++.+.+..-+.-...|..+ .....|+|+.. ++.....
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVila-----vp~~~~~ 108 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLS-----SPVRTFR 108 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEEC-----SCGGGHH
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEe-----CCHHHHH
Confidence 6788899876 3 4555566653323899999854 55555433322223344433 35578998874 3444455
Q ss_pred HHHHHHHHhhccCCCCcEEEE
Q 030291 93 KLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 93 ~~l~~~~~~L~p~~~~G~~~~ 113 (180)
++++++...+++ |.+++
T Consensus 109 ~vl~~l~~~l~~----~~iv~ 125 (314)
T 3ggo_A 109 EIAKKLSYILSE----DATVT 125 (314)
T ss_dssp HHHHHHHHHSCT----TCEEE
T ss_pred HHHHHHhhccCC----CcEEE
Confidence 788999999998 55544
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=92.73 E-value=0.18 Score=38.81 Aligned_cols=55 Identities=11% Similarity=0.087 Sum_probs=39.6
Q ss_pred ccCCCeEEEeCCcccHHHHHHH-HHCCC-CeEEEeeC-chhhccCCC---------C-CCeeEEecCC
Q 030291 13 FQGLRSMVDVGGGTGAFARIIS-EAFPG-IKCTVLDL-PHAVTDMPQ---------T-DNLKYIEGDM 67 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~-~~~~~-~~~~~~D~-~~~~~~a~~---------~-~~~~~~~~d~ 67 (180)
++++..++|||++.|..+..++ ...+. .+++++|+ +...+..++ . .++++++.-+
T Consensus 224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al 291 (409)
T 2py6_A 224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGA 291 (409)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEE
T ss_pred cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEE
Confidence 4788999999999999999888 55544 79999998 444444432 2 5666665444
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=92.66 E-value=0.19 Score=38.49 Aligned_cols=39 Identities=10% Similarity=0.304 Sum_probs=29.3
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHC-------CCCeEEEeeCchhhc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAF-------PGIKCTVLDLPHAVT 52 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~-------~~~~~~~~D~~~~~~ 52 (180)
+.+-+|+|+|+|.|.++..++... ...+++.+|.|..+.
T Consensus 79 p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr 124 (387)
T 1zkd_A 79 PQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLR 124 (387)
T ss_dssp CSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHH
T ss_pred CCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHH
Confidence 345579999999999988877542 345899999976333
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.54 E-value=1.9 Score=31.92 Aligned_cols=95 Identities=9% Similarity=0.102 Sum_probs=60.5
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcc---------cCCCccEEEecc
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQ---------FIPPSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~---------~~~~~D~v~~~~ 81 (180)
..++++||=.|+|. |.++..+++......++++|.++ .++.+++..-...+..+-.+ ....+|+|+-..
T Consensus 158 ~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~~~g~d~v~d~~ 237 (346)
T 4a2c_A 158 GCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLRELRFNQLILETA 237 (346)
T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHGGGCSSEEEEECS
T ss_pred cCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCeEEEeCCCCCHHHHHHhhcccCCcccccccc
Confidence 56788999999876 66777777776444678899854 66666653322222221111 122478877543
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeee
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVI 118 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~ 118 (180)
. .. ..++...+++++ +|.+++.....
T Consensus 238 G-----~~---~~~~~~~~~l~~---~G~~v~~g~~~ 263 (346)
T 4a2c_A 238 G-----VP---QTVELAVEIAGP---HAQLALVGTLH 263 (346)
T ss_dssp C-----SH---HHHHHHHHHCCT---TCEEEECCCCS
T ss_pred c-----cc---chhhhhhheecC---CeEEEEEeccC
Confidence 2 22 558888999999 89998876543
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.48 E-value=1.1 Score=33.56 Aligned_cols=92 Identities=10% Similarity=0.069 Sum_probs=59.5
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEe----cCCccc---------CCCccEE
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIE----GDMFQF---------IPPSDAF 77 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~----~d~~~~---------~~~~D~v 77 (180)
++++++||-+|+|. |..+..+++.. +++++++|.++ .++.+++..--..+. .+..+. ...+|+|
T Consensus 166 ~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~v 244 (352)
T 1e3j_A 166 VQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVT 244 (352)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCCEE
Confidence 56788999999875 77787888776 77799999754 555554421112222 122110 1359998
Q ss_pred EeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 78 FFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 78 ~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
+-... .. ..+....+.|++ +|.++....
T Consensus 245 id~~g-----~~---~~~~~~~~~l~~---~G~iv~~G~ 272 (352)
T 1e3j_A 245 IDCSG-----NE---KCITIGINITRT---GGTLMLVGM 272 (352)
T ss_dssp EECSC-----CH---HHHHHHHHHSCT---TCEEEECSC
T ss_pred EECCC-----CH---HHHHHHHHHHhc---CCEEEEEec
Confidence 86433 12 357888899999 899888654
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=92.43 E-value=1.1 Score=33.24 Aligned_cols=91 Identities=11% Similarity=0.073 Sum_probs=58.6
Q ss_pred ccCCCeEEEeCC--cccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecC---Ccc----c--CCCccEEEec
Q 030291 13 FQGLRSMVDVGG--GTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGD---MFQ----F--IPPSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~--G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d---~~~----~--~~~~D~v~~~ 80 (180)
++++++||-+|+ |.|..+..+++.. ++++++++.++ .++.+++...-..+..+ ..+ . ...+|+++-+
T Consensus 146 ~~~g~~vlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~g~D~vid~ 224 (334)
T 3qwb_A 146 VKKGDYVLLFAAAGGVGLILNQLLKMK-GAHTIAVASTDEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGVDASFDS 224 (334)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHTTTSCEEEEEEC
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCCcEEEeCCCchHHHHHHHHhCCCCceEEEEC
Confidence 677899999994 4477777777776 77999999844 55555542222222211 111 0 1259998864
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
..- ..+..+.+.|++ +|.+++...
T Consensus 225 ~g~---------~~~~~~~~~l~~---~G~iv~~G~ 248 (334)
T 3qwb_A 225 VGK---------DTFEISLAALKR---KGVFVSFGN 248 (334)
T ss_dssp CGG---------GGHHHHHHHEEE---EEEEEECCC
T ss_pred CCh---------HHHHHHHHHhcc---CCEEEEEcC
Confidence 431 237778889999 898888654
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.94 E-value=0.82 Score=34.82 Aligned_cols=97 Identities=15% Similarity=0.118 Sum_probs=62.6
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCC-eEEEeeCch-hhccCCCCCCeeEEec---C-Ccc------cCCCccEEEe
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGI-KCTVLDLPH-AVTDMPQTDNLKYIEG---D-MFQ------FIPPSDAFFF 79 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~-~~~~~D~~~-~~~~a~~~~~~~~~~~---d-~~~------~~~~~D~v~~ 79 (180)
++++++||-+|+|. |.++..+++.. ++ +++++|.++ .++.+++..- +.+.. + +.+ ....+|+|+-
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlAk~~-Ga~~Vi~~~~~~~~~~~a~~lGa-~~i~~~~~~~~~~~v~~~t~g~g~Dvvid 260 (398)
T 1kol_A 183 VGPGSTVYVAGAGPVGLAAAASARLL-GAAVVIVGDLNPARLAHAKAQGF-EIADLSLDTPLHEQIAALLGEPEVDCAVD 260 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTTC-EEEETTSSSCHHHHHHHHHSSSCEEEEEE
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHcCC-cEEccCCcchHHHHHHHHhCCCCCCEEEE
Confidence 56788999999876 88888888886 56 789999854 6666654222 22221 1 111 0125999886
Q ss_pred ccccc---------cCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 80 KTVFH---------FFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 80 ~~~l~---------~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
...-. |.+++. ..+....++|++ +|.+++...
T Consensus 261 ~~G~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~---~G~iv~~G~ 301 (398)
T 1kol_A 261 AVGFEARGHGHEGAKHEAPA--TVLNSLMQVTRV---AGKIGIPGL 301 (398)
T ss_dssp CCCTTCBCSSTTGGGSBCTT--HHHHHHHHHEEE---EEEEEECSC
T ss_pred CCCCcccccccccccccchH--HHHHHHHHHHhc---CCEEEEecc
Confidence 43321 122222 458889999999 899887654
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=91.73 E-value=1.7 Score=27.76 Aligned_cols=88 Identities=11% Similarity=0.095 Sum_probs=51.7
Q ss_pred CCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCccc-------CCCccEEEeccccccC
Q 030291 16 LRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQF-------IPPSDAFFFKTVFHFF 86 (180)
Q Consensus 16 ~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~-------~~~~D~v~~~~~l~~~ 86 (180)
..+|+=+|+|. |......+... +..++++|..+ .++.+++ ..+.++.+|..++ ...+|++++..
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~-g~~v~vid~~~~~~~~~~~-~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~----- 79 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLAS-DIPLVVIETSRTRVDELRE-RGVRAVLGNAANEEIMQLAHLECAKWLILTI----- 79 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHT-TCCEEEEESCHHHHHHHHH-TTCEEEESCTTSHHHHHHTTGGGCSEEEECC-----
T ss_pred CCCEEEECcCHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHH-cCCCEEECCCCCHHHHHhcCcccCCEEEEEC-----
Confidence 45788888876 44333333332 66899999854 5555543 4677788887542 23688887632
Q ss_pred ChHHHHHHHHHHHHhhccCCCCcEEEE
Q 030291 87 DDEDCLKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 87 ~~~~~~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
++......+....+.+.| +..++.
T Consensus 80 ~~~~~n~~~~~~a~~~~~---~~~iia 103 (140)
T 3fwz_A 80 PNGYEAGEIVASARAKNP---DIEIIA 103 (140)
T ss_dssp SCHHHHHHHHHHHHHHCS---SSEEEE
T ss_pred CChHHHHHHHHHHHHHCC---CCeEEE
Confidence 233222334455666777 565554
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=91.69 E-value=0.35 Score=35.32 Aligned_cols=95 Identities=13% Similarity=0.030 Sum_probs=62.1
Q ss_pred CCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCc-hhhccCCC----CCCeeEEecCCccc-----C--CCccEEEecccc
Q 030291 16 LRSMVDVGGGTGAFARIISEAFPGIKCTVLDLP-HAVTDMPQ----TDNLKYIEGDMFQF-----I--PPSDAFFFKTVF 83 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~-~~~~~a~~----~~~~~~~~~d~~~~-----~--~~~D~v~~~~~l 83 (180)
+..+||+=+|+|.++..+++. ..+++.+|.. +.....++ ..++++...|.... . ..+|+|++-=-.
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS~--~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPY 169 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLRS--QDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSY 169 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSCT--TSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCC
T ss_pred CCCceeEeCCcHHHHHHHcCC--CCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCC
Confidence 566899999999999998884 5789999993 34433333 46799999997541 1 259999983332
Q ss_pred ccCChHHHHHHHHHHHHh--hccCCCCcEEEEEEee
Q 030291 84 HFFDDEDCLKLLKKCREA--IASNGERGKVLIIDIV 117 (180)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~--L~p~~~~G~~~~~~~~ 117 (180)
+.-. ...++++.+.+. +.| +|.+++=-+.
T Consensus 170 e~k~--~~~~vl~~L~~~~~r~~---~Gi~v~WYPi 200 (283)
T 2oo3_A 170 ERKE--EYKEIPYAIKNAYSKFS---TGLYCVWYPV 200 (283)
T ss_dssp CSTT--HHHHHHHHHHHHHHHCT---TSEEEEEEEE
T ss_pred CCCc--HHHHHHHHHHHhCccCC---CeEEEEEEec
Confidence 2111 233556666653 344 6777764443
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.61 E-value=0.28 Score=37.11 Aligned_cols=92 Identities=11% Similarity=0.111 Sum_probs=58.6
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEec---CCccc-CCCccEEEeccccccC
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEG---DMFQF-IPPSDAFFFKTVFHFF 86 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~---d~~~~-~~~~D~v~~~~~l~~~ 86 (180)
++++++||-+|+|. |..+..+++.. +++++++|.++ .++.+++..--.++.. +.... ...+|+|+-...-
T Consensus 192 ~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~g~Dvvid~~g~--- 267 (369)
T 1uuf_A 192 AGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAA--- 267 (369)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSS---
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhhcCCCEEEECCCC---
Confidence 66789999999876 77888888776 77899999744 5555544211112211 11111 1368998864332
Q ss_pred ChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 87 DDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 87 ~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
+ ..++...+.|++ +|.++....
T Consensus 268 --~---~~~~~~~~~l~~---~G~iv~~G~ 289 (369)
T 1uuf_A 268 --P---HNLDDFTTLLKR---DGTMTLVGA 289 (369)
T ss_dssp --C---CCHHHHHTTEEE---EEEEEECCC
T ss_pred --H---HHHHHHHHHhcc---CCEEEEecc
Confidence 1 236677889999 898887654
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=91.50 E-value=0.82 Score=34.53 Aligned_cols=92 Identities=12% Similarity=0.058 Sum_probs=59.5
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCC-eEEEeeCch-hhccCCCCCCeeEEec-----CCccc-----CCCccEEEe
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGI-KCTVLDLPH-AVTDMPQTDNLKYIEG-----DMFQF-----IPPSDAFFF 79 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~-~~~~~D~~~-~~~~a~~~~~~~~~~~-----d~~~~-----~~~~D~v~~ 79 (180)
++++++||-+|+|. |.++..+++.. ++ +++++|.++ .++.+++..--..+.. ++.+. .+.+|+|+-
T Consensus 193 ~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid 271 (376)
T 1e3i_A 193 VTPGSTCAVFGLGCVGLSAIIGCKIA-GASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLD 271 (376)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCccEEEE
Confidence 66788999999875 77888888876 66 799999744 5555554221112211 11110 125899886
Q ss_pred ccccccCChHHHHHHHHHHHHhhccCCCC-cEEEEEEe
Q 030291 80 KTVFHFFDDEDCLKLLKKCREAIASNGER-GKVLIIDI 116 (180)
Q Consensus 80 ~~~l~~~~~~~~~~~l~~~~~~L~p~~~~-G~~~~~~~ 116 (180)
... .. ..+....++|++ + |.+++...
T Consensus 272 ~~G-----~~---~~~~~~~~~l~~---~~G~iv~~G~ 298 (376)
T 1e3i_A 272 CAG-----TA---QTLKAAVDCTVL---GWGSCTVVGA 298 (376)
T ss_dssp SSC-----CH---HHHHHHHHTBCT---TTCEEEECCC
T ss_pred CCC-----CH---HHHHHHHHHhhc---CCCEEEEECC
Confidence 432 12 458888999999 8 99887654
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=91.40 E-value=0.49 Score=35.63 Aligned_cols=92 Identities=16% Similarity=0.122 Sum_probs=60.6
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecC---Ccc------cCCCccEEEecc
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGD---MFQ------FIPPSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d---~~~------~~~~~D~v~~~~ 81 (180)
++++++||=+|+|. |..+..+++.. +++++++|.++ .++.+++..--..+..+ +.+ ....+|+|+-..
T Consensus 187 ~~~g~~VlV~G~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D~vid~~ 265 (363)
T 3uog_A 187 LRAGDRVVVQGTGGVALFGLQIAKAT-GAEVIVTSSSREKLDRAFALGADHGINRLEEDWVERVYALTGDRGADHILEIA 265 (363)
T ss_dssp CCTTCEEEEESSBHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEEET
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEecCchhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCCCceEEEECC
Confidence 67889999999776 77888888776 77999999854 56655542211222221 111 112599988643
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
. . ..+....+.|++ +|.+++....
T Consensus 266 g-----~----~~~~~~~~~l~~---~G~iv~~G~~ 289 (363)
T 3uog_A 266 G-----G----AGLGQSLKAVAP---DGRISVIGVL 289 (363)
T ss_dssp T-----S----SCHHHHHHHEEE---EEEEEEECCC
T ss_pred C-----h----HHHHHHHHHhhc---CCEEEEEecC
Confidence 3 1 236778889999 8999887654
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=91.40 E-value=0.39 Score=35.97 Aligned_cols=93 Identities=11% Similarity=0.112 Sum_probs=60.5
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCC-eEEEeeCch-hhccCCCCCCeeEEe---cCCcc----cC-C-CccEEEec
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGI-KCTVLDLPH-AVTDMPQTDNLKYIE---GDMFQ----FI-P-PSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~-~~~~~D~~~-~~~~a~~~~~~~~~~---~d~~~----~~-~-~~D~v~~~ 80 (180)
++++++||=+|+|. |.++..+++.. ++ +++++|.++ .++.+++..--.++. .|+.+ .. + .+|+|+-.
T Consensus 164 ~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g~D~v~d~ 242 (352)
T 3fpc_A 164 IKLGDTVCVIGIGPVGLMSVAGANHL-GAGRIFAVGSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKGVDKVVIA 242 (352)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTT-TCSSEEEECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCCEEEEEEC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCCCCEEEEC
Confidence 57788999999876 77788888776 66 799999854 566665422111221 12211 11 2 59998863
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
.. .+ ..+..+.+.|++ +|.++.....
T Consensus 243 ~g-----~~---~~~~~~~~~l~~---~G~~v~~G~~ 268 (352)
T 3fpc_A 243 GG-----DV---HTFAQAVKMIKP---GSDIGNVNYL 268 (352)
T ss_dssp SS-----CT---THHHHHHHHEEE---EEEEEECCCC
T ss_pred CC-----Ch---HHHHHHHHHHhc---CCEEEEeccc
Confidence 32 21 458888999999 8998887643
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=91.33 E-value=0.68 Score=34.49 Aligned_cols=94 Identities=14% Similarity=0.145 Sum_probs=62.5
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEec--CCccc------CCCccEEEeccc
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEG--DMFQF------IPPSDAFFFKTV 82 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~--d~~~~------~~~~D~v~~~~~ 82 (180)
.+++++||=+|+|. |..+..+++...+.+++++|.++ .++.+++..--.++.. +..+. ...+|+|+-...
T Consensus 169 ~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t~g~g~d~v~d~~G 248 (345)
T 3jv7_A 169 LGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELTGGQGATAVFDFVG 248 (345)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEECSTTHHHHHHHHHGGGCEEEEEESSC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHhCCCCCeEEEECCC
Confidence 57788999999876 78888888776577999999855 6666654222222221 11111 115898886433
Q ss_pred cccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 83 FHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 83 l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
.+ ..+..+.+.|++ +|.+++....
T Consensus 249 -----~~---~~~~~~~~~l~~---~G~iv~~G~~ 272 (345)
T 3jv7_A 249 -----AQ---STIDTAQQVVAV---DGHISVVGIH 272 (345)
T ss_dssp -----CH---HHHHHHHHHEEE---EEEEEECSCC
T ss_pred -----CH---HHHHHHHHHHhc---CCEEEEECCC
Confidence 22 468899999999 8998887543
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=91.21 E-value=0.75 Score=34.68 Aligned_cols=92 Identities=9% Similarity=0.023 Sum_probs=59.2
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCC-eEEEeeCch-hhccCCCCCCeeEEec-----CCcc-----cCCCccEEEe
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGI-KCTVLDLPH-AVTDMPQTDNLKYIEG-----DMFQ-----FIPPSDAFFF 79 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~-~~~~~D~~~-~~~~a~~~~~~~~~~~-----d~~~-----~~~~~D~v~~ 79 (180)
++++++||-+|+|. |..+..+++.. ++ +++++|.++ .++.+++..--..+.. ++.+ ..+.+|+|+-
T Consensus 189 ~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid 267 (373)
T 1p0f_A 189 VTPGSTCAVFGLGGVGFSAIVGCKAA-GASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVE 267 (373)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEE
Confidence 66788999999876 77777787776 55 799999744 5555554221112211 1111 0125899886
Q ss_pred ccccccCChHHHHHHHHHHHHhhccCCCC-cEEEEEEe
Q 030291 80 KTVFHFFDDEDCLKLLKKCREAIASNGER-GKVLIIDI 116 (180)
Q Consensus 80 ~~~l~~~~~~~~~~~l~~~~~~L~p~~~~-G~~~~~~~ 116 (180)
... .. ..+....+.|++ + |.+++...
T Consensus 268 ~~g-----~~---~~~~~~~~~l~~---~~G~iv~~G~ 294 (373)
T 1p0f_A 268 CAG-----RI---ETMMNALQSTYC---GSGVTVVLGL 294 (373)
T ss_dssp CSC-----CH---HHHHHHHHTBCT---TTCEEEECCC
T ss_pred CCC-----CH---HHHHHHHHHHhc---CCCEEEEEcc
Confidence 432 12 458888999999 8 99887654
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=91.06 E-value=0.84 Score=33.95 Aligned_cols=92 Identities=14% Similarity=0.177 Sum_probs=58.4
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEec---CCccc----CCCccEEEecccc
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEG---DMFQF----IPPSDAFFFKTVF 83 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~---d~~~~----~~~~D~v~~~~~l 83 (180)
++++++||-+|+|. |..+..+++.. +++++++|.++ .++.+++..-...+.. |..+. ...+|+++.....
T Consensus 162 ~~~g~~VlV~GaG~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vid~~g~ 240 (339)
T 1rjw_A 162 AKPGEWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVS 240 (339)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSCC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEEECCCC
Confidence 56788999999864 77777777776 67999999744 5555543211111111 11010 1358988864431
Q ss_pred ccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 84 HFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
. ..++...+.|++ +|.++....
T Consensus 241 -----~---~~~~~~~~~l~~---~G~~v~~g~ 262 (339)
T 1rjw_A 241 -----K---PAFQSAYNSIRR---GGACVLVGL 262 (339)
T ss_dssp -----H---HHHHHHHHHEEE---EEEEEECCC
T ss_pred -----H---HHHHHHHHHhhc---CCEEEEecc
Confidence 1 457888899999 888887653
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.04 E-value=1.3 Score=33.32 Aligned_cols=92 Identities=12% Similarity=0.070 Sum_probs=59.3
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCC-eEEEeeCch-hhccCCCCCCeeEEec-----CCccc-----CCCccEEEe
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGI-KCTVLDLPH-AVTDMPQTDNLKYIEG-----DMFQF-----IPPSDAFFF 79 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~-~~~~~D~~~-~~~~a~~~~~~~~~~~-----d~~~~-----~~~~D~v~~ 79 (180)
++++++||-+|+|. |..+..+++.. ++ +++++|.++ .++.+++..--..+.. ++.+. .+.+|+|+-
T Consensus 190 ~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid 268 (374)
T 1cdo_A 190 VEPGSTCAVFGLGAVGLAAVMGCHSA-GAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLE 268 (374)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCCCEEEE
Confidence 66788999999865 77788888876 66 799999744 5555554221112211 11110 125899886
Q ss_pred ccccccCChHHHHHHHHHHHHhhccCCCC-cEEEEEEe
Q 030291 80 KTVFHFFDDEDCLKLLKKCREAIASNGER-GKVLIIDI 116 (180)
Q Consensus 80 ~~~l~~~~~~~~~~~l~~~~~~L~p~~~~-G~~~~~~~ 116 (180)
...- . ..+..+.++|++ + |.+++...
T Consensus 269 ~~g~-----~---~~~~~~~~~l~~---~~G~iv~~G~ 295 (374)
T 1cdo_A 269 CVGN-----V---GVMRNALESCLK---GWGVSVLVGW 295 (374)
T ss_dssp CSCC-----H---HHHHHHHHTBCT---TTCEEEECSC
T ss_pred CCCC-----H---HHHHHHHHHhhc---CCcEEEEEcC
Confidence 4321 2 458888999999 8 99888654
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=90.89 E-value=2.4 Score=32.25 Aligned_cols=64 Identities=13% Similarity=0.052 Sum_probs=45.0
Q ss_pred CeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-CCCeeEEecCCccc-----------CCCccEEEecc
Q 030291 17 RSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-TDNLKYIEGDMFQF-----------IPPSDAFFFKT 81 (180)
Q Consensus 17 ~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-~~~~~~~~~d~~~~-----------~~~~D~v~~~~ 81 (180)
-+++|+-||.|.++..+.+.. -..+.++|..+ +.+..+. .++..++++|+.+. .+.+|+++..-
T Consensus 3 ~~vidLFsG~GGlslG~~~aG-~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggp 79 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAG-FDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGP 79 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHT-CEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECC
T ss_pred CeEEEEccCcCHHHHHHHHCC-CcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecC
Confidence 479999999999999998884 22356999854 4433332 45667788888542 13699998743
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=90.81 E-value=1.4 Score=32.66 Aligned_cols=93 Identities=13% Similarity=0.131 Sum_probs=58.2
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEE---ecCCcc----cCC--CccEEEecc
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYI---EGDMFQ----FIP--PSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~---~~d~~~----~~~--~~D~v~~~~ 81 (180)
.+++++||=+|+|. |..+..+++...+.+++++|.++ .++.+++..-...+ ..|..+ ... .+|.++...
T Consensus 161 ~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~~~~~~~~v~~~t~g~g~d~~~~~~ 240 (348)
T 4eez_A 161 VKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTINSGDVNPVDEIKKITGGLGVQSAIVCA 240 (348)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEEEC-CCCHHHHHHHHTTSSCEEEEEECC
T ss_pred CCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEEeCCCCCHHHHhhhhcCCCCceEEEEec
Confidence 56788999999887 45666666666688999999855 55555542222222 222211 111 366666533
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
.- . ..+....+.+++ +|.+++...
T Consensus 241 ~~-----~---~~~~~~~~~l~~---~G~~v~~g~ 264 (348)
T 4eez_A 241 VA-----R---IAFEQAVASLKP---MGKMVAVAV 264 (348)
T ss_dssp SC-----H---HHHHHHHHTEEE---EEEEEECCC
T ss_pred cC-----c---chhheeheeecC---CceEEEEec
Confidence 21 1 558888999999 888887653
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=90.75 E-value=0.57 Score=34.88 Aligned_cols=92 Identities=12% Similarity=0.147 Sum_probs=56.6
Q ss_pred ccCCCeEEEeCCc--ccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEec---CCcc----c--CCCccEEEec
Q 030291 13 FQGLRSMVDVGGG--TGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEG---DMFQ----F--IPPSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~G--~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~---d~~~----~--~~~~D~v~~~ 80 (180)
++++++||-+|+| .|..+..+++.. +++++++|.++ .++.+++...-..+.. +..+ . ...+|+++-+
T Consensus 142 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~ 220 (340)
T 3gms_A 142 LQRNDVLLVNACGSAIGHLFAQLSQIL-NFRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGADAAIDS 220 (340)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEES
T ss_pred cCCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhCCCcEEEeCCcccHHHHHHHHhCCCCCcEEEEC
Confidence 6788999999987 477777777765 77999999744 5555554211111211 1111 0 1259998864
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
.. .+. .....+.|++ +|.+++....
T Consensus 221 ~g-----~~~----~~~~~~~l~~---~G~iv~~G~~ 245 (340)
T 3gms_A 221 IG-----GPD----GNELAFSLRP---NGHFLTIGLL 245 (340)
T ss_dssp SC-----HHH----HHHHHHTEEE---EEEEEECCCT
T ss_pred CC-----Chh----HHHHHHHhcC---CCEEEEEeec
Confidence 33 222 3344589999 8998887643
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=90.73 E-value=1.7 Score=32.72 Aligned_cols=92 Identities=11% Similarity=0.049 Sum_probs=59.0
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCC-eEEEeeCch-hhccCCCCCCeeEEec-----CCcc---c--CCCccEEEe
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGI-KCTVLDLPH-AVTDMPQTDNLKYIEG-----DMFQ---F--IPPSDAFFF 79 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~-~~~~~D~~~-~~~~a~~~~~~~~~~~-----d~~~---~--~~~~D~v~~ 79 (180)
++++++||-+|+|. |..+..+++.. ++ +++++|.++ .++.+++..--..+.. ++.+ . ...+|+|+-
T Consensus 189 ~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid 267 (374)
T 2jhf_A 189 VTQGSTCAVFGLGGVGLSVIMGCKAA-GAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFE 267 (374)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCCcEEEE
Confidence 66788999999876 77788888876 66 799999744 5555544221112211 1111 0 125899886
Q ss_pred ccccccCChHHHHHHHHHHHHhhccCCCC-cEEEEEEe
Q 030291 80 KTVFHFFDDEDCLKLLKKCREAIASNGER-GKVLIIDI 116 (180)
Q Consensus 80 ~~~l~~~~~~~~~~~l~~~~~~L~p~~~~-G~~~~~~~ 116 (180)
... .. ..+....+.|++ + |.+++...
T Consensus 268 ~~g-----~~---~~~~~~~~~l~~---~~G~iv~~G~ 294 (374)
T 2jhf_A 268 VIG-----RL---DTMVTALSCCQE---AYGVSVIVGV 294 (374)
T ss_dssp CSC-----CH---HHHHHHHHHBCT---TTCEEEECSC
T ss_pred CCC-----CH---HHHHHHHHHhhc---CCcEEEEecc
Confidence 432 22 457888999999 8 99887654
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=90.54 E-value=1.1 Score=33.27 Aligned_cols=92 Identities=15% Similarity=0.133 Sum_probs=59.1
Q ss_pred ccCCCeEEEeCC--cccHHHHHHHHHCCCCeEEEeeCch-hhccC-CCCCCeeEEec---CCcc-----cCCCccEEEec
Q 030291 13 FQGLRSMVDVGG--GTGAFARIISEAFPGIKCTVLDLPH-AVTDM-PQTDNLKYIEG---DMFQ-----FIPPSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~--G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a-~~~~~~~~~~~---d~~~-----~~~~~D~v~~~ 80 (180)
++++++||-.|+ |.|..+..+++.. ++++++++.++ .++.+ ++..--..+.. +..+ ....+|+++.+
T Consensus 147 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~ 225 (336)
T 4b7c_A 147 PKNGETVVISGAAGAVGSVAGQIARLK-GCRVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGIDVFFDN 225 (336)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEEEEEES
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCceEEEEC
Confidence 678899999998 4477777777776 77999999754 55555 33221111211 1111 11258988764
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
.. . ..+..+.+.|++ +|.+++....
T Consensus 226 ~g-----~----~~~~~~~~~l~~---~G~iv~~G~~ 250 (336)
T 4b7c_A 226 VG-----G----EILDTVLTRIAF---KARIVLCGAI 250 (336)
T ss_dssp SC-----H----HHHHHHHTTEEE---EEEEEECCCG
T ss_pred CC-----c----chHHHHHHHHhh---CCEEEEEeec
Confidence 43 1 348888899999 8998886543
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=90.22 E-value=0.23 Score=36.53 Aligned_cols=87 Identities=10% Similarity=0.096 Sum_probs=55.4
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcccCC-CccEEEeccccccCChH
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQFIP-PSDAFFFKTVFHFFDDE 89 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~~~-~~D~v~~~~~l~~~~~~ 89 (180)
++++++||=+|+|. |.++..+++.. ++++++++ ++ ..+.+++..--..+ .| .+..+ .+|+|+-... .+
T Consensus 140 ~~~g~~VlV~GaG~vG~~a~qlak~~-Ga~Vi~~~-~~~~~~~~~~lGa~~v~-~d-~~~v~~g~Dvv~d~~g-----~~ 210 (315)
T 3goh_A 140 LTKQREVLIVGFGAVNNLLTQMLNNA-GYVVDLVS-ASLSQALAAKRGVRHLY-RE-PSQVTQKYFAIFDAVN-----SQ 210 (315)
T ss_dssp CCSCCEEEEECCSHHHHHHHHHHHHH-TCEEEEEC-SSCCHHHHHHHTEEEEE-SS-GGGCCSCEEEEECC---------
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEE-ChhhHHHHHHcCCCEEE-cC-HHHhCCCccEEEECCC-----ch
Confidence 67889999999864 77888888776 77999999 54 55656542212222 24 23333 5998885332 22
Q ss_pred HHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 90 DCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 90 ~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
.+....+.|++ +|.++...
T Consensus 211 ----~~~~~~~~l~~---~G~~v~~g 229 (315)
T 3goh_A 211 ----NAAALVPSLKA---NGHIICIQ 229 (315)
T ss_dssp -------TTGGGEEE---EEEEEEEC
T ss_pred ----hHHHHHHHhcC---CCEEEEEe
Confidence 13567789999 89888874
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=90.08 E-value=1.3 Score=32.83 Aligned_cols=91 Identities=10% Similarity=0.074 Sum_probs=58.0
Q ss_pred ccCCCeEEEeCC--cccHHHHHHHHHCCCCeEEEeeCch-hhccCC-CCCCeeEEe-c---CCccc-----CCCccEEEe
Q 030291 13 FQGLRSMVDVGG--GTGAFARIISEAFPGIKCTVLDLPH-AVTDMP-QTDNLKYIE-G---DMFQF-----IPPSDAFFF 79 (180)
Q Consensus 13 ~~~~~~iLdiG~--G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~-~~~~~~~~~-~---d~~~~-----~~~~D~v~~ 79 (180)
++++++||-.|+ |.|..+..+++.. ++++++++.++ .++.++ +........ . ++.+. ...+|+++.
T Consensus 153 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~ 231 (345)
T 2j3h_A 153 PKEGETVYVSAASGAVGQLVGQLAKMM-GCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFE 231 (345)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTSCCSEEEETTSCSCSHHHHHHHCTTCEEEEEE
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHcCCceEEecCCHHHHHHHHHHHhCCCCcEEEE
Confidence 567889999997 4577777777765 67899999854 555554 321111111 1 11110 125898886
Q ss_pred ccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 80 KTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 80 ~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
+.. . ..+....+.|++ +|.+++...
T Consensus 232 ~~g-----~----~~~~~~~~~l~~---~G~~v~~G~ 256 (345)
T 2j3h_A 232 NVG-----G----KMLDAVLVNMNM---HGRIAVCGM 256 (345)
T ss_dssp SSC-----H----HHHHHHHTTEEE---EEEEEECCC
T ss_pred CCC-----H----HHHHHHHHHHhc---CCEEEEEcc
Confidence 543 1 347888899999 898888654
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=89.96 E-value=1.7 Score=33.12 Aligned_cols=94 Identities=17% Similarity=0.153 Sum_probs=57.9
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCC-eEEEeeCch-hhccCCCCCCeeEEec---CCcc----c--CCCccEEEec
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGI-KCTVLDLPH-AVTDMPQTDNLKYIEG---DMFQ----F--IPPSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~-~~~~~D~~~-~~~~a~~~~~~~~~~~---d~~~----~--~~~~D~v~~~ 80 (180)
++++++||=+|+|. |..+..+++.. ++ +++++|.++ .++.+++..--.++.. |+.+ . ...+|+|+-.
T Consensus 211 ~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~vid~ 289 (404)
T 3ip1_A 211 IRPGDNVVILGGGPIGLAAVAILKHA-GASKVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLFLEA 289 (404)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSEEEEC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCEEEEC
Confidence 56788999999866 77788888876 66 899999754 6666654221112211 1111 0 1259998863
Q ss_pred cccccCChHHHHHHHHHHHHhh----ccCCCCcEEEEEEee
Q 030291 81 TVFHFFDDEDCLKLLKKCREAI----ASNGERGKVLIIDIV 117 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L----~p~~~~G~~~~~~~~ 117 (180)
.. .+. ..+..+.++| ++ +|.+++....
T Consensus 290 ~g-----~~~--~~~~~~~~~l~~~~~~---~G~iv~~G~~ 320 (404)
T 3ip1_A 290 TG-----VPQ--LVWPQIEEVIWRARGI---NATVAIVARA 320 (404)
T ss_dssp SS-----CHH--HHHHHHHHHHHHCSCC---CCEEEECSCC
T ss_pred CC-----CcH--HHHHHHHHHHHhccCC---CcEEEEeCCC
Confidence 32 221 2355555566 99 9999987643
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=89.68 E-value=1.2 Score=33.59 Aligned_cols=90 Identities=17% Similarity=0.192 Sum_probs=57.8
Q ss_pred CCCeEEEeC-Ccc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEec--CCcc---c--CCCccEEEeccccc
Q 030291 15 GLRSMVDVG-GGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEG--DMFQ---F--IPPSDAFFFKTVFH 84 (180)
Q Consensus 15 ~~~~iLdiG-~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~--d~~~---~--~~~~D~v~~~~~l~ 84 (180)
++++||=+| +|. |..+..+++...+++++++|.++ ..+.+++..--.++.. +..+ . ...+|+|+-...
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad~vi~~~~~~~~~v~~~~~~g~Dvvid~~g-- 248 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHVIDHSKPLAAEVAALGLGAPAFVFSTTH-- 248 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCSEEECTTSCHHHHHHTTCSCCEEEEEECSC--
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHhcCCCceEEEECCC--
Confidence 677899888 444 88888888874478999999854 5555554221111211 1111 1 125898876332
Q ss_pred cCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 85 FFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 85 ~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
.. ..+..+.++|++ +|.+++..
T Consensus 249 ---~~---~~~~~~~~~l~~---~G~iv~~g 270 (363)
T 4dvj_A 249 ---TD---KHAAEIADLIAP---QGRFCLID 270 (363)
T ss_dssp ---HH---HHHHHHHHHSCT---TCEEEECS
T ss_pred ---ch---hhHHHHHHHhcC---CCEEEEEC
Confidence 22 468889999999 99998873
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.67 E-value=1 Score=34.15 Aligned_cols=93 Identities=14% Similarity=0.109 Sum_probs=59.3
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCC-CeEEEeeCch-hhccCCCCCCeeEEecC------Ccc----cC-C-CccEE
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPG-IKCTVLDLPH-AVTDMPQTDNLKYIEGD------MFQ----FI-P-PSDAF 77 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~-~~~~~~D~~~-~~~~a~~~~~~~~~~~d------~~~----~~-~-~~D~v 77 (180)
++++++||-+|+|. |..+..+++.. + .++++++.++ .++.+++..--.++..+ +.+ .. + .+|+|
T Consensus 193 ~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~v~~~~~g~g~Dvv 271 (380)
T 1vj0_A 193 SFAGKTVVIQGAGPLGLFGVVIARSL-GAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFI 271 (380)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHT-TBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEE
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHc-CCceEEEEcCCHHHHHHHHHcCCcEEEeccccCcchHHHHHHHHhCCCCCcEE
Confidence 45678999999665 77888888876 6 5899999754 55555542222222222 111 11 2 59998
Q ss_pred EeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 78 FFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 78 ~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
+-...- . ..+....+.|++ +|.++.....
T Consensus 272 id~~g~-----~---~~~~~~~~~l~~---~G~iv~~G~~ 300 (380)
T 1vj0_A 272 LEATGD-----S---RALLEGSELLRR---GGFYSVAGVA 300 (380)
T ss_dssp EECSSC-----T---THHHHHHHHEEE---EEEEEECCCC
T ss_pred EECCCC-----H---HHHHHHHHHHhc---CCEEEEEecC
Confidence 864331 1 347788899999 8988876543
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=89.62 E-value=2.6 Score=31.29 Aligned_cols=89 Identities=17% Similarity=0.189 Sum_probs=57.9
Q ss_pred CCCeEEEeCCcc-cHHHHHHHHHCCCC-eEEEeeCch-hhccCCCCCCeeEEec---CCcc-----cCCCccEEEecccc
Q 030291 15 GLRSMVDVGGGT-GAFARIISEAFPGI-KCTVLDLPH-AVTDMPQTDNLKYIEG---DMFQ-----FIPPSDAFFFKTVF 83 (180)
Q Consensus 15 ~~~~iLdiG~G~-G~~~~~l~~~~~~~-~~~~~D~~~-~~~~a~~~~~~~~~~~---d~~~-----~~~~~D~v~~~~~l 83 (180)
++++||-+|+|. |..+..+++.. ++ +++++|.++ .++.+++. --..+.. ++.+ ....+|+|+-...
T Consensus 164 ~g~~VlV~GaG~vG~~~~q~a~~~-Ga~~Vi~~~~~~~~~~~~~~l-a~~v~~~~~~~~~~~~~~~~~~g~D~vid~~g- 240 (343)
T 2dq4_A 164 SGKSVLITGAGPIGLMAAMVVRAS-GAGPILVSDPNPYRLAFARPY-ADRLVNPLEEDLLEVVRRVTGSGVEVLLEFSG- 240 (343)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHHT-TCCSEEEECSCHHHHGGGTTT-CSEEECTTTSCHHHHHHHHHSSCEEEEEECSC-
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh-HHhccCcCccCHHHHHHHhcCCCCCEEEECCC-
Confidence 788999999854 77777777776 66 899999854 66666543 2222221 1101 1125899886433
Q ss_pred ccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 84 HFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
.. ..++...+.|++ +|.++....
T Consensus 241 ----~~---~~~~~~~~~l~~---~G~iv~~g~ 263 (343)
T 2dq4_A 241 ----NE---AAIHQGLMALIP---GGEARILGI 263 (343)
T ss_dssp ----CH---HHHHHHHHHEEE---EEEEEECCC
T ss_pred ----CH---HHHHHHHHHHhc---CCEEEEEec
Confidence 22 457888999999 888887654
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=89.57 E-value=2.9 Score=27.02 Aligned_cols=85 Identities=18% Similarity=0.163 Sum_probs=48.1
Q ss_pred cCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcc-----c--CCCccEEEeccccc
Q 030291 14 QGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQ-----F--IPPSDAFFFKTVFH 84 (180)
Q Consensus 14 ~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~-----~--~~~~D~v~~~~~l~ 84 (180)
....+|+=+|+|. |......+... +..++++|.+. ..+.++...+..++.+|..+ . ...+|+|+..-.
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~~-g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~-- 93 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASSS-GHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTN-- 93 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSS--
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeC--
Confidence 4567899999865 44333333333 56899999844 56666522345556666532 1 235898887432
Q ss_pred cCChHHHHHHHHHHHHhhcc
Q 030291 85 FFDDEDCLKLLKKCREAIAS 104 (180)
Q Consensus 85 ~~~~~~~~~~l~~~~~~L~p 104 (180)
+......+..+.+.+.+
T Consensus 94 ---~~~~~~~~~~~~~~~~~ 110 (155)
T 2g1u_A 94 ---DDSTNFFISMNARYMFN 110 (155)
T ss_dssp ---CHHHHHHHHHHHHHTSC
T ss_pred ---CcHHHHHHHHHHHHHCC
Confidence 33333445555555555
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=89.35 E-value=1.1 Score=33.62 Aligned_cols=93 Identities=14% Similarity=0.070 Sum_probs=60.5
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCCe-EEEeeCch-hhccCCC-C-CCeeEEec-----CCcc----c--CCCccE
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGIK-CTVLDLPH-AVTDMPQ-T-DNLKYIEG-----DMFQ----F--IPPSDA 76 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~-~~~~D~~~-~~~~a~~-~-~~~~~~~~-----d~~~----~--~~~~D~ 76 (180)
++++++||=+|+|. |.++..+++.. +++ ++++|.++ ..+.+++ . .-+.+... |+.+ . ...+|+
T Consensus 177 ~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dv 255 (363)
T 3m6i_A 177 VRLGDPVLICGAGPIGLITMLCAKAA-GACPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGGIEPAV 255 (363)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHT-TCCSEEEEESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHTSSCCCSE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhchhcccccccccchHHHHHHHHHHhCCCCCCE
Confidence 67788999999876 78888888876 665 89999754 5555543 1 22233211 1111 1 125999
Q ss_pred EEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 77 FFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 77 v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
|+-... .+ ..+..+.+.|++ +|.+++....
T Consensus 256 vid~~g-----~~---~~~~~~~~~l~~---~G~iv~~G~~ 285 (363)
T 3m6i_A 256 ALECTG-----VE---SSIAAAIWAVKF---GGKVFVIGVG 285 (363)
T ss_dssp EEECSC-----CH---HHHHHHHHHSCT---TCEEEECCCC
T ss_pred EEECCC-----Ch---HHHHHHHHHhcC---CCEEEEEccC
Confidence 886433 22 458888999999 9999987643
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=89.18 E-value=1.4 Score=33.14 Aligned_cols=92 Identities=13% Similarity=0.091 Sum_probs=58.6
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCC-eEEEeeCch-hhccCCCCCCeeEEe-c----CCcc---c--CCCccEEEe
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGI-KCTVLDLPH-AVTDMPQTDNLKYIE-G----DMFQ---F--IPPSDAFFF 79 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~-~~~~~D~~~-~~~~a~~~~~~~~~~-~----d~~~---~--~~~~D~v~~ 79 (180)
++++++||-+|+|. |.++..+++.. ++ +++++|.++ .++.+++..--.++. . ++.+ . ...+|+|+-
T Consensus 188 ~~~g~~VlV~GaG~vG~~avqla~~~-Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~vid 266 (373)
T 2fzw_A 188 LEPGSVCAVFGLGGVGLAVIMGCKVA-GASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFE 266 (373)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCCCEEEE
Confidence 66788999999866 77777777765 66 799999744 555555411111121 1 1111 0 125899886
Q ss_pred ccccccCChHHHHHHHHHHHHhhccCCCC-cEEEEEEe
Q 030291 80 KTVFHFFDDEDCLKLLKKCREAIASNGER-GKVLIIDI 116 (180)
Q Consensus 80 ~~~l~~~~~~~~~~~l~~~~~~L~p~~~~-G~~~~~~~ 116 (180)
... .. ..+..+.++|++ + |.+++...
T Consensus 267 ~~g-----~~---~~~~~~~~~l~~---~~G~iv~~G~ 293 (373)
T 2fzw_A 267 CIG-----NV---KVMRAALEACHK---GWGVSVVVGV 293 (373)
T ss_dssp CSC-----CH---HHHHHHHHTBCT---TTCEEEECSC
T ss_pred CCC-----cH---HHHHHHHHhhcc---CCcEEEEEec
Confidence 432 12 457888999999 8 99888654
|
| >3mag_A VP39; methylated adenine, methyltransferase, RNA CAP analog, poly (A) polymerase, mRNA processing, transcription; HET: SAH 3MA; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1bky_A* 1jsz_A* 1v39_A* 1p39_A* 1vp9_A* 2vp3_A* 1eam_A* 1jte_A* 1jtf_A* 4dcg_A* 3mct_A* 1b42_A* 1eqa_A* 1av6_A* 3er9_A* 2gaf_A 3er8_A 2ga9_A* 3erc_A* | Back alignment and structure |
|---|
Probab=89.06 E-value=0.81 Score=33.50 Aligned_cols=52 Identities=17% Similarity=0.262 Sum_probs=36.2
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCC----CeEEEeeCchhhccCCCCCCeeEEec
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPG----IKCTVLDLPHAVTDMPQTDNLKYIEG 65 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~----~~~~~~D~~~~~~~a~~~~~~~~~~~ 65 (180)
.++..|+=+|||.|.....|.+.+|. .+++.+|+..--.......+++.+..
T Consensus 59 ~~~~~VVYVGSApG~HL~~L~~~fp~~f~~ikWvLiDPap~~~~l~~~~NV~li~~ 114 (307)
T 3mag_A 59 LDGATVVYIGSAPGTHIRYLRDHFYNLGVIIKWMLIDGRHHDPILNGLRDVTLVTR 114 (307)
T ss_dssp STTCEEEEESCCSCHHHHHHHHHHHHTTCCCEEEEEESSCCCGGGTTCTTEEEEEC
T ss_pred CCCcEEEEecccCccHHHHHHHhchhhCCCeEEEEEcCCcchhhhcCCCcEEEEec
Confidence 34679999999999999988887654 68999997332222223455655544
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=89.02 E-value=1.5 Score=32.38 Aligned_cols=91 Identities=13% Similarity=0.143 Sum_probs=56.7
Q ss_pred ccCCCeEEEeCC--cccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCC-CeeEEecC---Ccc-----cCCCccEEEec
Q 030291 13 FQGLRSMVDVGG--GTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTD-NLKYIEGD---MFQ-----FIPPSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~--G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~-~~~~~~~d---~~~-----~~~~~D~v~~~ 80 (180)
++++++||-.|+ |.|..+..++... +++++++|.++ .++.+++.. ...+-..+ ..+ ....+|+++.+
T Consensus 143 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~ 221 (333)
T 1v3u_A 143 VKGGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDN 221 (333)
T ss_dssp CCSSCEEEEESTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEES
T ss_pred CCCCCEEEEecCCCcHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhcCCcEEEecCCHHHHHHHHHHHhCCCCeEEEEC
Confidence 567889999997 4566776666665 77899999743 555443321 11111111 100 01358998875
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
.. . ..+....+.|++ +|.+++...
T Consensus 222 ~g-----~----~~~~~~~~~l~~---~G~~v~~g~ 245 (333)
T 1v3u_A 222 VG-----G----EFLNTVLSQMKD---FGKIAICGA 245 (333)
T ss_dssp SC-----H----HHHHHHHTTEEE---EEEEEECCC
T ss_pred CC-----h----HHHHHHHHHHhc---CCEEEEEec
Confidence 44 1 237788899999 898887654
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.82 E-value=0.97 Score=33.70 Aligned_cols=90 Identities=13% Similarity=0.162 Sum_probs=57.4
Q ss_pred ccCCCeEEEeCC--cccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCc---c---c-----CCCccEEE
Q 030291 13 FQGLRSMVDVGG--GTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMF---Q---F-----IPPSDAFF 78 (180)
Q Consensus 13 ~~~~~~iLdiG~--G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~---~---~-----~~~~D~v~ 78 (180)
++++++||-+|+ |.|..+..++... +++++++|.++ ..+.+++...-... |.. + . ...+|+++
T Consensus 167 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~V~~~~~~~~~~~~~~~~g~~~~~--d~~~~~~~~~~~~~~~~~~~D~vi 243 (347)
T 2hcy_A 167 LMAGHWVAISGAAGGLGSLAVQYAKAM-GYRVLGIDGGEGKEELFRSIGGEVFI--DFTKEKDIVGAVLKATDGGAHGVI 243 (347)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECSTTHHHHHHHTTCCEEE--ETTTCSCHHHHHHHHHTSCEEEEE
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHC-CCcEEEEcCCHHHHHHHHHcCCceEE--ecCccHhHHHHHHHHhCCCCCEEE
Confidence 567889999998 4577777777765 67899999743 44444432111111 221 1 0 11589888
Q ss_pred eccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 79 FKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 79 ~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
.+... . ..++.+.+.|++ +|.++....
T Consensus 244 ~~~g~-----~---~~~~~~~~~l~~---~G~iv~~g~ 270 (347)
T 2hcy_A 244 NVSVS-----E---AAIEASTRYVRA---NGTTVLVGM 270 (347)
T ss_dssp ECSSC-----H---HHHHHHTTSEEE---EEEEEECCC
T ss_pred ECCCc-----H---HHHHHHHHHHhc---CCEEEEEeC
Confidence 75432 1 458888999999 898887654
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=88.77 E-value=5.4 Score=29.33 Aligned_cols=123 Identities=15% Similarity=0.112 Sum_probs=69.4
Q ss_pred eEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcc----cCCCccEEEecccccc-------
Q 030291 18 SMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQ----FIPPSDAFFFKTVFHF------- 85 (180)
Q Consensus 18 ~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~----~~~~~D~v~~~~~l~~------- 85 (180)
+++|+=||.|.++..+.+.. --.+.++|+.+ +.+-.+....-.+..+|+.+ ..+..|+++...--.-
T Consensus 2 kvidLFsG~GG~~~G~~~aG-~~~v~a~e~d~~a~~ty~~N~~~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ~fS~ag~~ 80 (331)
T 3ubt_Y 2 NLISLFSGAGGLDLGFQKAG-FRIICANEYDKSIWKTYESNHSAKLIKGDISKISSDEFPKCDGIIGGPPSQSWSEGGSL 80 (331)
T ss_dssp EEEEESCTTCHHHHHHHHTT-CEEEEEEECCTTTHHHHHHHCCSEEEESCGGGCCGGGSCCCSEEECCCCGGGTEETTEE
T ss_pred eEEEeCcCccHHHHHHHHCC-CEEEEEEeCCHHHHHHHHHHCCCCcccCChhhCCHhhCCcccEEEecCCCCCcCCCCCc
Confidence 68999999999999988773 22346888844 33332322234567788854 3567999886321111
Q ss_pred --CChHH--HHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCC
Q 030291 86 --FDDED--CLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGF 161 (180)
Q Consensus 86 --~~~~~--~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 161 (180)
..|+. ...-+-++.+.++| - +++.|.+..-.. .......+.+.+.|++.||
T Consensus 81 ~g~~d~R~~L~~~~~r~i~~~~P----k-~~~~ENV~gl~~--------------------~~~~~~~~~i~~~l~~~GY 135 (331)
T 3ubt_Y 81 RGIDDPRGKLFYEYIRILKQKKP----I-FFLAENVKGMMA--------------------QRHNKAVQEFIQEFDNAGY 135 (331)
T ss_dssp CCTTCGGGHHHHHHHHHHHHHCC----S-EEEEEECCGGGG--------------------CTTSHHHHHHHHHHHHHTE
T ss_pred cCCCCchhHHHHHHHHHHhccCC----e-EEEeeeeccccc--------------------ccccchhhhhhhhhccCCc
Confidence 22321 11223345566777 3 344443321100 0011245677888999999
Q ss_pred eEEEE
Q 030291 162 THYKI 166 (180)
Q Consensus 162 ~~~~~ 166 (180)
.+...
T Consensus 136 ~v~~~ 140 (331)
T 3ubt_Y 136 DVHII 140 (331)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 86544
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=88.62 E-value=1.3 Score=32.99 Aligned_cols=129 Identities=12% Similarity=0.062 Sum_probs=71.9
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCC-CCeE-EEeeCch-hhccCCC-CCCeeEEecCCccc----CC--CccEEEecccc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFP-GIKC-TVLDLPH-AVTDMPQ-TDNLKYIEGDMFQF----IP--PSDAFFFKTVF 83 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~-~~~D~~~-~~~~a~~-~~~~~~~~~d~~~~----~~--~~D~v~~~~~l 83 (180)
+..-+++|+-||.|.++..+.+..- ...+ .++|..+ +.+-.+. .+.. +.++|+.+- .+ .+|+++...--
T Consensus 8 ~~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~-~~~~DI~~~~~~~i~~~~~Dil~ggpPC 86 (327)
T 3qv2_A 8 QKQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE-VQVKNLDSISIKQIESLNCNTWFMSPPC 86 (327)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC-CBCCCTTTCCHHHHHHTCCCEEEECCCC
T ss_pred CCCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC-cccCChhhcCHHHhccCCCCEEEecCCc
Confidence 3456899999999999999988742 2345 6999854 4333332 1111 456777542 22 58999875443
Q ss_pred ccC-----------ChHHHHHHHHHHHH-hhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHH
Q 030291 84 HFF-----------DDEDCLKLLKKCRE-AIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQE 151 (180)
Q Consensus 84 ~~~-----------~~~~~~~~l~~~~~-~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (180)
..+ .|+ +..++.++.+ +++.....-.+++.|.+..-. ...+.+.
T Consensus 87 Q~fs~S~ag~~~~~~d~-r~~L~~~~~r~~i~~~~~~P~~~~lENV~gl~-----------------------~~~~~~~ 142 (327)
T 3qv2_A 87 QPYNNSIMSKHKDINDP-RAKSVLHLYRDILPYLINKPKHIFIENVPLFK-----------------------ESLVFKE 142 (327)
T ss_dssp TTCSHHHHTTTCTTTCG-GGHHHHHHHHTTGGGCSSCCSEEEEEECGGGG-----------------------GSHHHHH
T ss_pred cCcccccCCCCCCCccc-cchhHHHHHHHHHHHhccCCCEEEEEchhhhc-----------------------ChHHHHH
Confidence 333 222 2244555555 443200002344544332110 0113577
Q ss_pred HHHHHHHcCCeEEEEe
Q 030291 152 WGSLFVNAGFTHYKIA 167 (180)
Q Consensus 152 ~~~~l~~aGf~~~~~~ 167 (180)
+.+.|++.||.+....
T Consensus 143 i~~~l~~~GY~v~~~v 158 (327)
T 3qv2_A 143 IYNILIKNQYYIKDII 158 (327)
T ss_dssp HHHHHHHTTCEEEEEE
T ss_pred HHHHHHhCCCEEEEEE
Confidence 8889999999876543
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=88.58 E-value=0.42 Score=34.90 Aligned_cols=90 Identities=10% Similarity=-0.003 Sum_probs=56.1
Q ss_pred ccCCCeEEEeCC--cccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEec----CCcccCCCccEEEecccccc
Q 030291 13 FQGLRSMVDVGG--GTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEG----DMFQFIPPSDAFFFKTVFHF 85 (180)
Q Consensus 13 ~~~~~~iLdiG~--G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~----d~~~~~~~~D~v~~~~~l~~ 85 (180)
++++++||-+|+ |.|..+..+++.. ++++++++.++ ..+.+++..--..... +..+....+|+++. ..-
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid-~g~-- 198 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE-VRG-- 198 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-CSC--
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-CCH--
Confidence 457889999997 4477777787776 67899999843 5544443221111211 11112256999887 321
Q ss_pred CChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 86 FDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
..++...+.|++ +|.++....
T Consensus 199 -------~~~~~~~~~l~~---~G~~v~~g~ 219 (302)
T 1iz0_A 199 -------KEVEESLGLLAH---GGRLVYIGA 219 (302)
T ss_dssp -------TTHHHHHTTEEE---EEEEEEC--
T ss_pred -------HHHHHHHHhhcc---CCEEEEEeC
Confidence 236778899999 888887654
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=88.56 E-value=2.4 Score=31.83 Aligned_cols=92 Identities=14% Similarity=0.160 Sum_probs=59.3
Q ss_pred ccCCCeEEEeC--CcccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEec---CCcc----cC-CCccEEEecc
Q 030291 13 FQGLRSMVDVG--GGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEG---DMFQ----FI-PPSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG--~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~---d~~~----~~-~~~D~v~~~~ 81 (180)
++++++||-+| +|.|..+..+++.. ++++++++.++ .++.+++..--..+.. ++.+ .. ..+|+++-..
T Consensus 161 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~D~vid~~ 239 (362)
T 2c0c_A 161 LSEGKKVLVTAAAGGTGQFAMQLSKKA-KCHVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDVVYESV 239 (362)
T ss_dssp CCTTCEEEETTTTBTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHCTTCEEEEEECS
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHcCCcEEEecCChhHHHHHHHhcCCCCCEEEECC
Confidence 56788999999 45588888888876 77899999854 5555543221112221 1111 01 2589988654
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
. . ..++.+.+.|++ +|.+++....
T Consensus 240 g-----~----~~~~~~~~~l~~---~G~iv~~g~~ 263 (362)
T 2c0c_A 240 G-----G----AMFDLAVDALAT---KGRLIVIGFI 263 (362)
T ss_dssp C-----T----HHHHHHHHHEEE---EEEEEECCCG
T ss_pred C-----H----HHHHHHHHHHhc---CCEEEEEeCC
Confidence 3 1 347888899999 8988886643
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=88.34 E-value=0.16 Score=37.86 Aligned_cols=40 Identities=15% Similarity=0.175 Sum_probs=32.5
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCC
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMP 55 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~ 55 (180)
+++..|||.-||+|..+.+..+. +.+++++|+++ ..+.++
T Consensus 251 ~~~~~VlDpF~GsGtt~~aa~~~--gr~~ig~e~~~~~~~~~~ 291 (323)
T 1boo_A 251 EPDDLVVDIFGGSNTTGLVAERE--SRKWISFEMKPEYVAASA 291 (323)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHc--CCCEEEEeCCHHHHHHHH
Confidence 67789999999999999887777 77899999955 544443
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=88.23 E-value=2.2 Score=30.74 Aligned_cols=88 Identities=13% Similarity=0.158 Sum_probs=51.0
Q ss_pred CeEEEeCCcc-c-HHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcccCCCccEEEeccccccCChHHHHH
Q 030291 17 RSMVDVGGGT-G-AFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCLK 93 (180)
Q Consensus 17 ~~iLdiG~G~-G-~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~~~~~~ 93 (180)
.+|.=||+|. | .++..+.+..++..+++.|.+. ..+.+.+.........|..+.....|+|+.. ++......
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVila-----vp~~~~~~ 81 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILA-----VPIKKTID 81 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEEC-----SCHHHHHH
T ss_pred ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEc-----CCHHHHHH
Confidence 5688888887 3 3455566664456899999843 4443332211111223332233468988873 34444457
Q ss_pred HHHHHHHh-hccCCCCcEEEE
Q 030291 94 LLKKCREA-IASNGERGKVLI 113 (180)
Q Consensus 94 ~l~~~~~~-L~p~~~~G~~~~ 113 (180)
+++++... +++ |.+++
T Consensus 82 v~~~l~~~~l~~----~~ivi 98 (290)
T 3b1f_A 82 FIKILADLDLKE----DVIIT 98 (290)
T ss_dssp HHHHHHTSCCCT----TCEEE
T ss_pred HHHHHHhcCCCC----CCEEE
Confidence 78888777 877 55554
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=87.35 E-value=0.42 Score=35.27 Aligned_cols=90 Identities=11% Similarity=0.091 Sum_probs=56.2
Q ss_pred ccCCCeEEEeC-Ccc-cHHHHHHHHHCCCCeEEEeeCchhhccCCCCCCeeEEec---C-CcccCCCccEEEeccccccC
Q 030291 13 FQGLRSMVDVG-GGT-GAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYIEG---D-MFQFIPPSDAFFFKTVFHFF 86 (180)
Q Consensus 13 ~~~~~~iLdiG-~G~-G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~---d-~~~~~~~~D~v~~~~~l~~~ 86 (180)
++++++||=+| +|. |..+..+++.. ++++++++.++..+.+++..--..+.. + +.+....+|+|+-...
T Consensus 150 ~~~g~~vlV~Ga~G~vG~~a~q~a~~~-Ga~vi~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~g---- 224 (321)
T 3tqh_A 150 VKQGDVVLIHAGAGGVGHLAIQLAKQK-GTTVITTASKRNHAFLKALGAEQCINYHEEDFLLAISTPVDAVIDLVG---- 224 (321)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEECHHHHHHHHHHTCSEEEETTTSCHHHHCCSCEEEEEESSC----
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHc-CCEEEEEeccchHHHHHHcCCCEEEeCCCcchhhhhccCCCEEEECCC----
Confidence 67889999986 444 88888888876 778888875444454443111112211 1 1112346898876332
Q ss_pred ChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 87 DDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 87 ~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
.+ . +....+.|++ +|.++...
T Consensus 225 -~~---~-~~~~~~~l~~---~G~iv~~g 245 (321)
T 3tqh_A 225 -GD---V-GIQSIDCLKE---TGCIVSVP 245 (321)
T ss_dssp -HH---H-HHHHGGGEEE---EEEEEECC
T ss_pred -cH---H-HHHHHHhccC---CCEEEEeC
Confidence 22 2 4778899999 88888753
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=87.28 E-value=0.35 Score=36.10 Aligned_cols=91 Identities=10% Similarity=0.024 Sum_probs=58.1
Q ss_pred CCCeEEEeCCcc-cHHHHHHHHHC-CCCeEEEeeCch-hhccCCCCCCeeEEe----cCCcc--cCC-CccEEEeccccc
Q 030291 15 GLRSMVDVGGGT-GAFARIISEAF-PGIKCTVLDLPH-AVTDMPQTDNLKYIE----GDMFQ--FIP-PSDAFFFKTVFH 84 (180)
Q Consensus 15 ~~~~iLdiG~G~-G~~~~~l~~~~-~~~~~~~~D~~~-~~~~a~~~~~~~~~~----~d~~~--~~~-~~D~v~~~~~l~ 84 (180)
++++||-+|+|. |..+..+++.. |+++++++|.++ ..+.+++..--.++. .|... ..+ .+|+|+-...-
T Consensus 170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~g~g~D~vid~~g~- 248 (344)
T 2h6e_A 170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMKDAESLINKLTDGLGASIAIDLVGT- 248 (344)
T ss_dssp SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEEECHHHHHHHHHHHHTTCCEEEEEESSCC-
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEEeccccchHHHHHhhcCCCccEEEECCCC-
Confidence 788999999865 67777777663 478899999754 555555421111111 11111 112 59998864432
Q ss_pred cCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 85 FFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 85 ~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
+ ..++.+.+.|++ +|.++....
T Consensus 249 ----~---~~~~~~~~~l~~---~G~iv~~g~ 270 (344)
T 2h6e_A 249 ----E---ETTYNLGKLLAQ---EGAIILVGM 270 (344)
T ss_dssp ----H---HHHHHHHHHEEE---EEEEEECCC
T ss_pred ----h---HHHHHHHHHhhc---CCEEEEeCC
Confidence 2 458888999999 898887654
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=87.22 E-value=0.62 Score=34.78 Aligned_cols=93 Identities=22% Similarity=0.264 Sum_probs=57.3
Q ss_pred ccCCCeEEEeCCc--ccHHHHHHHHHCCCCeEEEeeCch-hhccCCCC-CCeeEEecC--C----cccC--CCccEEEec
Q 030291 13 FQGLRSMVDVGGG--TGAFARIISEAFPGIKCTVLDLPH-AVTDMPQT-DNLKYIEGD--M----FQFI--PPSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~G--~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~-~~~~~~~~d--~----~~~~--~~~D~v~~~ 80 (180)
++++++||-.|+| .|..+..+++...+++++++|.++ .++.+++. ....+-..+ . .+.. +.+|+++.+
T Consensus 168 ~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~ 247 (347)
T 1jvb_A 168 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDL 247 (347)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEES
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCEEecCCCccHHHHHHHHhcCCCceEEEEC
Confidence 6678899999987 455666666654367899999744 55555431 111111111 1 0111 368998865
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
..- . ..++...+.|++ +|.+++...
T Consensus 248 ~g~-----~---~~~~~~~~~l~~---~G~iv~~g~ 272 (347)
T 1jvb_A 248 NNS-----E---KTLSVYPKALAK---QGKYVMVGL 272 (347)
T ss_dssp CCC-----H---HHHTTGGGGEEE---EEEEEECCS
T ss_pred CCC-----H---HHHHHHHHHHhc---CCEEEEECC
Confidence 432 1 457888899999 898887654
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=87.19 E-value=1.3 Score=32.99 Aligned_cols=92 Identities=14% Similarity=0.132 Sum_probs=57.5
Q ss_pred ccCCCeEEEeCC--cccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecC--Ccc----cC-C-CccEEEecc
Q 030291 13 FQGLRSMVDVGG--GTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGD--MFQ----FI-P-PSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~--G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d--~~~----~~-~-~~D~v~~~~ 81 (180)
++++++||=+|+ |.|..+..+++.. ++++++++.++ ..+.+++...-.....+ ..+ .. + .+|+++-..
T Consensus 157 ~~~g~~VlV~Gasg~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~v~~~~~~~g~Dvvid~~ 235 (342)
T 4eye_A 157 LRAGETVLVLGAAGGIGTAAIQIAKGM-GAKVIAVVNRTAATEFVKSVGADIVLPLEEGWAKAVREATGGAGVDMVVDPI 235 (342)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTCSEEEESSTTHHHHHHHHTTTSCEEEEEESC
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhcCCcEEecCchhHHHHHHHHhCCCCceEEEECC
Confidence 677899999997 4477888888776 77999999843 55555542111122221 111 11 2 599988644
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
.- ..+..+.+.|++ +|.+++....
T Consensus 236 g~---------~~~~~~~~~l~~---~G~iv~~G~~ 259 (342)
T 4eye_A 236 GG---------PAFDDAVRTLAS---EGRLLVVGFA 259 (342)
T ss_dssp C-----------CHHHHHHTEEE---EEEEEEC---
T ss_pred ch---------hHHHHHHHhhcC---CCEEEEEEcc
Confidence 32 237778899999 8998887543
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=87.18 E-value=1.6 Score=32.49 Aligned_cols=92 Identities=13% Similarity=0.083 Sum_probs=58.3
Q ss_pred ccCCCeEEEeCC--cccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEec---CCcc----c--CCCccEEEec
Q 030291 13 FQGLRSMVDVGG--GTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEG---DMFQ----F--IPPSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~--G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~---d~~~----~--~~~~D~v~~~ 80 (180)
++++++||-+|+ |.|..+..+++.. ++++++++.++ .++.+++...-..+.. ++.+ . ...+|+++.+
T Consensus 164 ~~~g~~vlV~Gasg~iG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~ 242 (343)
T 2eih_A 164 VRPGDDVLVMAAGSGVSVAAIQIAKLF-GARVIATAGSEDKLRRAKALGADETVNYTHPDWPKEVRRLTGGKGADKVVDH 242 (343)
T ss_dssp CCTTCEEEECSTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHTCSEEEETTSTTHHHHHHHHTTTTCEEEEEES
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHhCCCCceEEEEC
Confidence 667889999998 5578888887776 67899999843 5554443111111111 1101 0 1259998875
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
.. . ..+..+.+.|++ +|.++.....
T Consensus 243 ~g-~--------~~~~~~~~~l~~---~G~~v~~g~~ 267 (343)
T 2eih_A 243 TG-A--------LYFEGVIKATAN---GGRIAIAGAS 267 (343)
T ss_dssp SC-S--------SSHHHHHHHEEE---EEEEEESSCC
T ss_pred CC-H--------HHHHHHHHhhcc---CCEEEEEecC
Confidence 44 2 237778899999 8888876543
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=86.95 E-value=1.7 Score=32.34 Aligned_cols=90 Identities=18% Similarity=0.204 Sum_probs=56.9
Q ss_pred CCCeEEEeCCcc-cHHHHHHHHHCCCC-eEEEeeCch-hhccCCCCCCeeEEec---CCcc----c--CCCccEEEeccc
Q 030291 15 GLRSMVDVGGGT-GAFARIISEAFPGI-KCTVLDLPH-AVTDMPQTDNLKYIEG---DMFQ----F--IPPSDAFFFKTV 82 (180)
Q Consensus 15 ~~~~iLdiG~G~-G~~~~~l~~~~~~~-~~~~~D~~~-~~~~a~~~~~~~~~~~---d~~~----~--~~~~D~v~~~~~ 82 (180)
++++||-+|+|. |..+..+++.. ++ +++++|.++ .++.+++..--..+.. ++.+ . ...+|+|+-...
T Consensus 167 ~g~~VlV~GaG~vG~~~~q~a~~~-Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~vid~~g 245 (348)
T 2d8a_A 167 SGKSVLITGAGPLGLLGIAVAKAS-GAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFSG 245 (348)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHT-TCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCCEEEECCC
Confidence 778999999864 77777777776 66 899999754 5555543111111211 1111 0 125899886433
Q ss_pred cccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 83 FHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 83 l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
. . ..++.+.+.|++ +|.++....
T Consensus 246 ~-----~---~~~~~~~~~l~~---~G~iv~~g~ 268 (348)
T 2d8a_A 246 A-----P---KALEQGLQAVTP---AGRVSLLGL 268 (348)
T ss_dssp C-----H---HHHHHHHHHEEE---EEEEEECCC
T ss_pred C-----H---HHHHHHHHHHhc---CCEEEEEcc
Confidence 1 1 457888999999 888887654
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=86.93 E-value=0.96 Score=33.39 Aligned_cols=92 Identities=13% Similarity=0.082 Sum_probs=58.1
Q ss_pred ccCCCeEEEeCC--cccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEec---CCcc----cC--CCccEEEec
Q 030291 13 FQGLRSMVDVGG--GTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEG---DMFQ----FI--PPSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~--G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~---d~~~----~~--~~~D~v~~~ 80 (180)
++++++||=+|+ |.|..+..+++.. ++++++++.++ .++.+++...-..+.. +..+ .. ..+|+++-+
T Consensus 138 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~ 216 (325)
T 3jyn_A 138 VKPGEIILFHAAAGGVGSLACQWAKAL-GAKLIGTVSSPEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKCPVVYDG 216 (325)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEES
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhCCCCceEEEEC
Confidence 677899999983 4477777777765 77899999754 5555554221112211 1111 11 259998864
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
..- ..+....+.|++ +|.+++....
T Consensus 217 ~g~---------~~~~~~~~~l~~---~G~iv~~g~~ 241 (325)
T 3jyn_A 217 VGQ---------DTWLTSLDSVAP---RGLVVSFGNA 241 (325)
T ss_dssp SCG---------GGHHHHHTTEEE---EEEEEECCCT
T ss_pred CCh---------HHHHHHHHHhcC---CCEEEEEecC
Confidence 432 236778899999 8998887643
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=86.68 E-value=0.23 Score=37.40 Aligned_cols=94 Identities=19% Similarity=0.181 Sum_probs=57.3
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEec----CCcccC-CCccEEEecccccc
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEG----DMFQFI-PPSDAFFFKTVFHF 85 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~----d~~~~~-~~~D~v~~~~~l~~ 85 (180)
++++++||-+|+|. |..+..+++.. +++++++|.++ .++.+++..--.++.. +..+.. ..+|+|+-...-.
T Consensus 177 ~~~g~~VlV~GaG~vG~~~~qlak~~-Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~~g~~- 254 (360)
T 1piw_A 177 CGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSL- 254 (360)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCS-
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHcCCCEEEcCcCchHHHHHhhcCCCEEEECCCCC-
Confidence 66789999999855 77777777765 67899999743 5555544211112211 221111 3699988644320
Q ss_pred CChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 86 FDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
. . ..++.+.+.|++ +|.++....
T Consensus 255 -~-~---~~~~~~~~~l~~---~G~iv~~g~ 277 (360)
T 1piw_A 255 -T-D---IDFNIMPKAMKV---GGRIVSISI 277 (360)
T ss_dssp -T-T---CCTTTGGGGEEE---EEEEEECCC
T ss_pred -c-H---HHHHHHHHHhcC---CCEEEEecC
Confidence 0 1 225566789999 888887654
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=86.58 E-value=2.7 Score=31.37 Aligned_cols=90 Identities=17% Similarity=0.126 Sum_probs=56.3
Q ss_pred ccCCCeEEEeCC--cccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcc---------cCCCccEEEec
Q 030291 13 FQGLRSMVDVGG--GTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQ---------FIPPSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~--G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~---------~~~~~D~v~~~ 80 (180)
++++++||-.|+ |.|..+..+++.. ++++++++.++ .++.+++...-.....+-.+ ....+|+++.+
T Consensus 168 ~~~g~~vlV~GasggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~ 246 (351)
T 1yb5_A 168 VKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEM 246 (351)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEES
T ss_pred CCCcCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCChhHHHHHHHcCCCEEEeCCCchHHHHHHHHcCCCCcEEEEEC
Confidence 567889999996 4477777777765 67899999744 44444432111112111101 01258998865
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
.. . ..+....+.|++ +|.+++..
T Consensus 247 ~G-----~----~~~~~~~~~l~~---~G~iv~~g 269 (351)
T 1yb5_A 247 LA-----N----VNLSKDLSLLSH---GGRVIVVG 269 (351)
T ss_dssp CH-----H----HHHHHHHHHEEE---EEEEEECC
T ss_pred CC-----h----HHHHHHHHhccC---CCEEEEEe
Confidence 43 1 236778899999 89888765
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=86.04 E-value=0.51 Score=35.09 Aligned_cols=33 Identities=21% Similarity=0.293 Sum_probs=29.5
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLP 48 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~ 48 (180)
+++..|||.=||+|..+.+..+. +.+++++|++
T Consensus 241 ~~~~~vlDpF~GsGtt~~aa~~~--~r~~ig~e~~ 273 (319)
T 1eg2_A 241 HPGSTVLDFFAGSGVTARVAIQE--GRNSICTDAA 273 (319)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHH--TCEEEEEESS
T ss_pred CCCCEEEecCCCCCHHHHHHHHc--CCcEEEEECC
Confidence 57789999999999999998888 6789999994
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=85.95 E-value=5.6 Score=28.46 Aligned_cols=82 Identities=13% Similarity=0.077 Sum_probs=46.8
Q ss_pred eEEEeCCcc-cH-HHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcccCC-CccEEEeccccccCChHHHHH
Q 030291 18 SMVDVGGGT-GA-FARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQFIP-PSDAFFFKTVFHFFDDEDCLK 93 (180)
Q Consensus 18 ~iLdiG~G~-G~-~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~~~-~~D~v~~~~~l~~~~~~~~~~ 93 (180)
+|.=||+|. |. ++..+.+.....+++++|.+. ..+.+++..-......|..+... ..|+|+. .++......
T Consensus 3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVil-----avp~~~~~~ 77 (281)
T 2g5c_A 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVML-----SSPVRTFRE 77 (281)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEE-----CSCHHHHHH
T ss_pred EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEE-----cCCHHHHHH
Confidence 567788776 33 344444442223799999843 44444322211111234433445 7899887 345555557
Q ss_pred HHHHHHHhhcc
Q 030291 94 LLKKCREAIAS 104 (180)
Q Consensus 94 ~l~~~~~~L~p 104 (180)
++.++...+++
T Consensus 78 v~~~l~~~l~~ 88 (281)
T 2g5c_A 78 IAKKLSYILSE 88 (281)
T ss_dssp HHHHHHHHSCT
T ss_pred HHHHHHhhCCC
Confidence 88888888988
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=85.74 E-value=3.8 Score=29.29 Aligned_cols=84 Identities=14% Similarity=0.107 Sum_probs=47.7
Q ss_pred eEEEeCCcc-cH-HHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcccCCCccEEEeccccccCChHHHHHH
Q 030291 18 SMVDVGGGT-GA-FARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCLKL 94 (180)
Q Consensus 18 ~iLdiG~G~-G~-~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~~~~~~~ 94 (180)
+|.=||+|. |. ++..+.+. +.+++++|.+. ..+.+.+..-......|..+. ...|+|+.. +++.....+
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~--g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~D~vi~a-----v~~~~~~~~ 73 (279)
T 2f1k_A 2 KIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL-QTAKIIFLC-----TPIQLILPT 73 (279)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTTSCSEEESCGGGG-TTCSEEEEC-----SCHHHHHHH
T ss_pred EEEEEcCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHhCCCCccccCCHHHh-CCCCEEEEE-----CCHHHHHHH
Confidence 466688776 33 34444444 45789999843 444333211111123344334 678998873 444455577
Q ss_pred HHHHHHhhccCCCCcEEEE
Q 030291 95 LKKCREAIASNGERGKVLI 113 (180)
Q Consensus 95 l~~~~~~L~p~~~~G~~~~ 113 (180)
++++...+++ |.+++
T Consensus 74 ~~~l~~~~~~----~~~vv 88 (279)
T 2f1k_A 74 LEKLIPHLSP----TAIVT 88 (279)
T ss_dssp HHHHGGGSCT----TCEEE
T ss_pred HHHHHhhCCC----CCEEE
Confidence 8888888887 55554
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=85.69 E-value=4.7 Score=25.07 Aligned_cols=86 Identities=14% Similarity=0.187 Sum_probs=47.2
Q ss_pred CeEEEeCCcccHHHHHHHHHC--CCCeEEEeeCch-hhccCCCCCCeeEEecCCcc-------cCCCccEEEeccccccC
Q 030291 17 RSMVDVGGGTGAFARIISEAF--PGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQ-------FIPPSDAFFFKTVFHFF 86 (180)
Q Consensus 17 ~~iLdiG~G~G~~~~~l~~~~--~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~-------~~~~~D~v~~~~~l~~~ 86 (180)
.+|+=+|+|. .+..+++.. .+.+++.+|.++ ..+..++..++.+..+|..+ ....+|+|+..-
T Consensus 5 m~i~IiG~G~--iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~----- 77 (140)
T 1lss_A 5 MYIIIAGIGR--VGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVT----- 77 (140)
T ss_dssp CEEEEECCSH--HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECC-----
T ss_pred CEEEEECCCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEee-----
Confidence 5688888754 433333221 256899999843 44433322245566666533 134689888753
Q ss_pred ChHHHHHHHHHHHHhhccCCCCcEEEE
Q 030291 87 DDEDCLKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 87 ~~~~~~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
++......+..+.+.+++ +.++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~----~~ii~ 100 (140)
T 1lss_A 78 GKEEVNLMSSLLAKSYGI----NKTIA 100 (140)
T ss_dssp SCHHHHHHHHHHHHHTTC----CCEEE
T ss_pred CCchHHHHHHHHHHHcCC----CEEEE
Confidence 222323445566666777 45554
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=85.48 E-value=2 Score=32.31 Aligned_cols=92 Identities=20% Similarity=0.193 Sum_probs=55.2
Q ss_pred cc-CCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCC-CCCCeeEEec-CC--cc-cCCCccEEEeccccc
Q 030291 13 FQ-GLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMP-QTDNLKYIEG-DM--FQ-FIPPSDAFFFKTVFH 84 (180)
Q Consensus 13 ~~-~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~-~~~~~~~~~~-d~--~~-~~~~~D~v~~~~~l~ 84 (180)
.. ++++||=+|+|. |..+..+++.. ++++++++.++ ..+.++ +..--.++.. +. .. ....+|+|+-.....
T Consensus 184 ~~~~g~~VlV~GaG~vG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~D~vid~~g~~ 262 (366)
T 1yqd_A 184 LDEPGKHIGIVGLGGLGHVAVKFAKAF-GSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVSAV 262 (366)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCGGGHHHHHHTSCCSEEEETTCHHHHHHTTTCEEEEEECCSSC
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHhcCCceEEeccCHHHHHHhhCCCCEEEECCCcH
Confidence 44 778899999765 67777777776 67899999744 444443 3211112211 11 01 123689988644321
Q ss_pred cCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 85 FFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 85 ~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
..++...+.|++ +|.++....
T Consensus 263 --------~~~~~~~~~l~~---~G~iv~~g~ 283 (366)
T 1yqd_A 263 --------HPLLPLFGLLKS---HGKLILVGA 283 (366)
T ss_dssp --------CCSHHHHHHEEE---EEEEEECCC
T ss_pred --------HHHHHHHHHHhc---CCEEEEEcc
Confidence 124566788999 888887654
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=85.23 E-value=2.7 Score=33.16 Aligned_cols=126 Identities=17% Similarity=0.206 Sum_probs=70.8
Q ss_pred cCCCeEEEeC-CcccHH--HHHHHHHCCCCeEEEeeCc-h-hhccCCCCCCeeEEecCCcccCCCccEEEeccccccCCh
Q 030291 14 QGLRSMVDVG-GGTGAF--ARIISEAFPGIKCTVLDLP-H-AVTDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDD 88 (180)
Q Consensus 14 ~~~~~iLdiG-~G~G~~--~~~l~~~~~~~~~~~~D~~-~-~~~~a~~~~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~ 88 (180)
...++|+=|| +|+|.. ++.|.+. +.++++.|.. . ..+..+ ...+.+..+.-.+....+|+|+.+-.+.. .+
T Consensus 20 ~~~~~v~viGiG~sG~s~~A~~l~~~--G~~V~~~D~~~~~~~~~l~-~~gi~~~~g~~~~~~~~~d~vV~Spgi~~-~~ 95 (494)
T 4hv4_A 20 RRVRHIHFVGIGGAGMGGIAEVLANE--GYQISGSDLAPNSVTQHLT-ALGAQIYFHHRPENVLDASVVVVSTAISA-DN 95 (494)
T ss_dssp --CCEEEEETTTSTTHHHHHHHHHHT--TCEEEEECSSCCHHHHHHH-HTTCEEESSCCGGGGTTCSEEEECTTSCT-TC
T ss_pred ccCCEEEEEEEcHhhHHHHHHHHHhC--CCeEEEEECCCCHHHHHHH-HCCCEEECCCCHHHcCCCCEEEECCCCCC-CC
Confidence 3457888888 456763 4444555 8889999973 2 333332 23566665533234557999888766532 22
Q ss_pred HHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCe
Q 030291 89 EDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFT 162 (180)
Q Consensus 89 ~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 162 (180)
+. +.+++ +. |.-++.+.-. +.+..........++.+++..|..-+..+|+++|+.
T Consensus 96 p~----~~~a~---~~----gi~v~~~~e~--------l~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~~ 150 (494)
T 4hv4_A 96 PE----IVAAR---EA----RIPVIRRAEM--------LAELMRYRHGIAVAGTHGKTTTTAMLSSIYAEAGLD 150 (494)
T ss_dssp HH----HHHHH---HT----TCCEEEHHHH--------HHHHHTTSEEEEEECSSSHHHHHHHHHHHHHHTTCC
T ss_pred HH----HHHHH---HC----CCCEEcHHHH--------HHHHhcCCCEEEEecCCChHHHHHHHHHHHHhcCCC
Confidence 32 33333 22 4445543100 111111112344566778888888889999999985
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=84.56 E-value=3.1 Score=32.33 Aligned_cols=91 Identities=11% Similarity=-0.004 Sum_probs=57.3
Q ss_pred ccCCCeEEEeCC-c-ccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEe---cCCc-----------------c
Q 030291 13 FQGLRSMVDVGG-G-TGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIE---GDMF-----------------Q 69 (180)
Q Consensus 13 ~~~~~~iLdiG~-G-~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~---~d~~-----------------~ 69 (180)
++++++||=+|+ | .|.++..+++.. ++++++++.++ .++.+++..--.++. .|.. +
T Consensus 226 ~~~g~~VlV~GasG~vG~~avqlak~~-Ga~vi~~~~~~~~~~~~~~lGa~~vi~~~~~d~~~~~~~~~~~~~~~~~~~~ 304 (456)
T 3krt_A 226 MKQGDNVLIWGASGGLGSYATQFALAG-GANPICVVSSPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGK 304 (456)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHTCCEEEETTTTTCCSEEETTEECHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCCcEEEecCcCcccccccccccchHHHHHHHH
Confidence 678899999997 3 477888888876 77888888744 555555411111111 1110 1
Q ss_pred ------cCCCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 70 ------FIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 70 ------~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
....+|+|+-... . ..+....++|++ +|.+++...
T Consensus 305 ~i~~~t~g~g~Dvvid~~G-----~----~~~~~~~~~l~~---~G~iv~~G~ 345 (456)
T 3krt_A 305 RIRELTGGEDIDIVFEHPG-----R----ETFGASVFVTRK---GGTITTCAS 345 (456)
T ss_dssp HHHHHHTSCCEEEEEECSC-----H----HHHHHHHHHEEE---EEEEEESCC
T ss_pred HHHHHhCCCCCcEEEEcCC-----c----hhHHHHHHHhhC---CcEEEEEec
Confidence 1125898876332 2 347888899999 898887643
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=84.56 E-value=2.1 Score=31.98 Aligned_cols=91 Identities=18% Similarity=0.135 Sum_probs=57.3
Q ss_pred ccCCCeEEEeCC--cccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEec---CCcc-----cCCCccEEEecc
Q 030291 13 FQGLRSMVDVGG--GTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEG---DMFQ-----FIPPSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~--G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~---d~~~-----~~~~~D~v~~~~ 81 (180)
++++++||-+|+ |.|..+..+++.. +++++++|.++ .++.+++...-..+.. +..+ ....+|+++.+.
T Consensus 165 ~~~g~~VlV~Gg~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~ 243 (353)
T 4dup_A 165 LTEGESVLIHGGTSGIGTTAIQLARAF-GAEVYATAGSTGKCEACERLGAKRGINYRSEDFAAVIKAETGQGVDIILDMI 243 (353)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHSSCEEEEEESC
T ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhcCCCEEEeCCchHHHHHHHHHhCCCceEEEECC
Confidence 678899999953 4477777777776 77999999744 5555554211111211 1111 112599988754
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
.- ..+....+.|++ +|.+++...
T Consensus 244 g~---------~~~~~~~~~l~~---~G~iv~~g~ 266 (353)
T 4dup_A 244 GA---------AYFERNIASLAK---DGCLSIIAF 266 (353)
T ss_dssp CG---------GGHHHHHHTEEE---EEEEEECCC
T ss_pred CH---------HHHHHHHHHhcc---CCEEEEEEe
Confidence 32 236778889999 898887653
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=84.55 E-value=3.6 Score=28.27 Aligned_cols=86 Identities=10% Similarity=0.149 Sum_probs=50.0
Q ss_pred eEEEeCCcccHHHHHHHHHC--CCCeEEEeeCch-hhccCCCCCCeeEEecCCccc-------CCCccEEEeccccccCC
Q 030291 18 SMVDVGGGTGAFARIISEAF--PGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQF-------IPPSDAFFFKTVFHFFD 87 (180)
Q Consensus 18 ~iLdiG~G~G~~~~~l~~~~--~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~-------~~~~D~v~~~~~l~~~~ 87 (180)
+|+=+|+ |.++..+++.. .+..++.+|..+ ..+...+..++.++.+|..+. ...+|++++.. +
T Consensus 2 ~iiIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~-----~ 74 (218)
T 3l4b_C 2 KVIIIGG--ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILT-----P 74 (218)
T ss_dssp CEEEECC--HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECC-----S
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEec-----C
Confidence 3555665 55555444332 266799999844 454433333567888888652 34689888742 3
Q ss_pred hHHHHHHHHHHHHhhccCCCCcEEEE
Q 030291 88 DEDCLKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 88 ~~~~~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
++.....+....+.+.+ ...++.
T Consensus 75 ~d~~n~~~~~~a~~~~~---~~~iia 97 (218)
T 3l4b_C 75 RDEVNLFIAQLVMKDFG---VKRVVS 97 (218)
T ss_dssp CHHHHHHHHHHHHHTSC---CCEEEE
T ss_pred CcHHHHHHHHHHHHHcC---CCeEEE
Confidence 34434556666666666 455554
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=84.53 E-value=5.6 Score=30.62 Aligned_cols=90 Identities=16% Similarity=0.164 Sum_probs=56.4
Q ss_pred CCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCccc-------CCCccEEEeccccccC
Q 030291 16 LRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQF-------IPPSDAFFFKTVFHFF 86 (180)
Q Consensus 16 ~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~-------~~~~D~v~~~~~l~~~ 86 (180)
..+|+=+|+|. |......+... +..++++|... .++.+++ ..+.++.+|..+. ....|+|++..
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~-g~~vvvId~d~~~v~~~~~-~g~~vi~GDat~~~~L~~agi~~A~~viv~~----- 76 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSS-GVKMVVLDHDPDHIETLRK-FGMKVFYGDATRMDLLESAGAAKAEVLINAI----- 76 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHT-TCCEEEEECCHHHHHHHHH-TTCCCEESCTTCHHHHHHTTTTTCSEEEECC-----
T ss_pred CCeEEEECCCHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHh-CCCeEEEcCCCCHHHHHhcCCCccCEEEECC-----
Confidence 34677788765 44333333332 67899999954 6665553 3566788888652 23688887733
Q ss_pred ChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 87 DDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 87 ~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
++......+....+.+.| ...++.-.
T Consensus 77 ~~~~~n~~i~~~ar~~~p---~~~Iiara 102 (413)
T 3l9w_A 77 DDPQTNLQLTEMVKEHFP---HLQIIARA 102 (413)
T ss_dssp SSHHHHHHHHHHHHHHCT---TCEEEEEE
T ss_pred CChHHHHHHHHHHHHhCC---CCeEEEEE
Confidence 344444557777788888 56666643
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=84.52 E-value=1.2 Score=33.41 Aligned_cols=92 Identities=17% Similarity=0.222 Sum_probs=55.5
Q ss_pred cc-CCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCC-CCCCeeEEec-CC--cc-cCCCccEEEeccccc
Q 030291 13 FQ-GLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMP-QTDNLKYIEG-DM--FQ-FIPPSDAFFFKTVFH 84 (180)
Q Consensus 13 ~~-~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~-~~~~~~~~~~-d~--~~-~~~~~D~v~~~~~l~ 84 (180)
.. ++++||=+|+|. |..+..+++.. +++++++|.++ ..+.++ +..--.++.. +. .. ....+|+|+-...-.
T Consensus 177 ~~~~g~~VlV~GaG~vG~~a~qlak~~-Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~g~D~vid~~g~~ 255 (357)
T 2cf5_A 177 LKQPGLRGGILGLGGVGHMGVKIAKAM-GHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPVH 255 (357)
T ss_dssp TTSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSTTHHHHHHTTSCCSCEEETTCHHHHHHSTTTEEEEEECCCSC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHHcCCceeeccccHHHHHHhcCCCCEEEECCCCh
Confidence 45 788999999765 67777777765 67899999854 554444 3111111211 11 01 123589988643311
Q ss_pred cCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 85 FFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 85 ~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
..+....+.|++ +|.++....
T Consensus 256 --------~~~~~~~~~l~~---~G~iv~~G~ 276 (357)
T 2cf5_A 256 --------HALEPYLSLLKL---DGKLILMGV 276 (357)
T ss_dssp --------CCSHHHHTTEEE---EEEEEECSC
T ss_pred --------HHHHHHHHHhcc---CCEEEEeCC
Confidence 125567789999 898887654
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=84.28 E-value=1.4 Score=32.75 Aligned_cols=88 Identities=14% Similarity=0.233 Sum_probs=54.7
Q ss_pred CCCeEEEeC-Ccc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEec--CCcc----c-CCCccEEEeccccc
Q 030291 15 GLRSMVDVG-GGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEG--DMFQ----F-IPPSDAFFFKTVFH 84 (180)
Q Consensus 15 ~~~~iLdiG-~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~--d~~~----~-~~~~D~v~~~~~l~ 84 (180)
++++||=+| +|. |..+..+++.. ++++++++.++ .++.+++..--..+.. +..+ . ...+|+|+-...
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~g~Dvv~d~~g-- 226 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAY-GLRVITTASRNETIEWTKKMGADIVLNHKESLLNQFKTQGIELVDYVFCTFN-- 226 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEECCSHHHHHHHHHHTCSEEECTTSCHHHHHHHHTCCCEEEEEESSC--
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhcCCcEEEECCccHHHHHHHhCCCCccEEEECCC--
Confidence 678899884 443 77788888776 77999999844 5555554111111111 1111 1 125898886322
Q ss_pred cCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 85 FFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 85 ~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
.. ..+..+.++|++ +|.++..
T Consensus 227 ---~~---~~~~~~~~~l~~---~G~iv~~ 247 (346)
T 3fbg_A 227 ---TD---MYYDDMIQLVKP---RGHIATI 247 (346)
T ss_dssp ---HH---HHHHHHHHHEEE---EEEEEES
T ss_pred ---ch---HHHHHHHHHhcc---CCEEEEE
Confidence 22 557888999999 8888664
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=84.11 E-value=2.7 Score=31.40 Aligned_cols=91 Identities=12% Similarity=0.043 Sum_probs=55.8
Q ss_pred ccCCCeEEEeCC--cccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEec-C--Ccc----cC--CCccEEEec
Q 030291 13 FQGLRSMVDVGG--GTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEG-D--MFQ----FI--PPSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~--G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~-d--~~~----~~--~~~D~v~~~ 80 (180)
++++++||-.|+ |.|..+..++... +++++++|.++ .++.+++...-..... + ..+ .. ..+|+++.+
T Consensus 160 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~ 238 (354)
T 2j8z_A 160 VQAGDYVLIHAGLSGVGTAAIQLTRMA-GAIPLVTAGSQKKLQMAEKLGAAAGFNYKKEDFSEATLKFTKGAGVNLILDC 238 (354)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEES
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCCcEEEecCChHHHHHHHHHhcCCCceEEEEC
Confidence 667889999984 4577777777765 77899999744 5554433111111111 1 101 11 258998865
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
..- + .+....+.|++ +|.+++...
T Consensus 239 ~G~-----~----~~~~~~~~l~~---~G~iv~~G~ 262 (354)
T 2j8z_A 239 IGG-----S----YWEKNVNCLAL---DGRWVLYGL 262 (354)
T ss_dssp SCG-----G----GHHHHHHHEEE---EEEEEECCC
T ss_pred CCc-----h----HHHHHHHhccC---CCEEEEEec
Confidence 432 1 26677889999 898888654
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=83.23 E-value=2.8 Score=31.34 Aligned_cols=86 Identities=19% Similarity=0.230 Sum_probs=54.4
Q ss_pred CeEEEeCCcc-cHHH-HHHH-HHCCCCe-EEEeeCc-h---hhccCCCCCCeeEEecCCcc-c-------CCCccEEEec
Q 030291 17 RSMVDVGGGT-GAFA-RIIS-EAFPGIK-CTVLDLP-H---AVTDMPQTDNLKYIEGDMFQ-F-------IPPSDAFFFK 80 (180)
Q Consensus 17 ~~iLdiG~G~-G~~~-~~l~-~~~~~~~-~~~~D~~-~---~~~~a~~~~~~~~~~~d~~~-~-------~~~~D~v~~~ 80 (180)
++||=+|+|. |.++ ..++ +.. +++ ++++|.+ + ..+.+++.. .+.. |..+ . .+.+|+|+-.
T Consensus 174 ~~VlV~GaG~vG~~a~iqla~k~~-Ga~~Vi~~~~~~~~~~~~~~~~~lG-a~~v--~~~~~~~~~i~~~~gg~Dvvid~ 249 (357)
T 2b5w_A 174 SSAFVLGNGSLGLLTLAMLKVDDK-GYENLYCLGRRDRPDPTIDIIEELD-ATYV--DSRQTPVEDVPDVYEQMDFIYEA 249 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHCTT-CCCEEEEEECCCSSCHHHHHHHHTT-CEEE--ETTTSCGGGHHHHSCCEEEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHHHHc-CCcEEEEEeCCcccHHHHHHHHHcC-Cccc--CCCccCHHHHHHhCCCCCEEEEC
Confidence 8999999754 6777 7777 654 666 9999974 3 455554422 2222 2211 0 1258888753
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
.. .. ..++.+.+.|++ +|.++.....
T Consensus 250 ~g-----~~---~~~~~~~~~l~~---~G~iv~~g~~ 275 (357)
T 2b5w_A 250 TG-----FP---KHAIQSVQALAP---NGVGALLGVP 275 (357)
T ss_dssp SC-----CH---HHHHHHHHHEEE---EEEEEECCCC
T ss_pred CC-----Ch---HHHHHHHHHHhc---CCEEEEEeCC
Confidence 32 22 357888999999 8988887543
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=82.94 E-value=2.1 Score=31.55 Aligned_cols=91 Identities=9% Similarity=0.019 Sum_probs=55.6
Q ss_pred ccCCCeEEEeCC--cccHHHHHHHHHCCCCeEEEeeCch-hhccCCCC-CCeeEEecC--Ccc----c--CCCccEEEec
Q 030291 13 FQGLRSMVDVGG--GTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQT-DNLKYIEGD--MFQ----F--IPPSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~--G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~-~~~~~~~~d--~~~----~--~~~~D~v~~~ 80 (180)
++++++||-.|+ |.|..+..+++.. +++++++|.++ .++.+++. ....+-..+ ..+ . ...+|+++.+
T Consensus 138 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~ 216 (327)
T 1qor_A 138 IKPDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDS 216 (327)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEEC
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCCCEEEECCCccHHHHHHHHhCCCCceEEEEC
Confidence 667889999994 4466666666654 67899999754 44444431 111111111 101 0 1258998875
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
.. . ..++.+.+.|++ +|.+++...
T Consensus 217 ~g-----~----~~~~~~~~~l~~---~G~iv~~g~ 240 (327)
T 1qor_A 217 VG-----R----DTWERSLDCLQR---RGLMVSFGN 240 (327)
T ss_dssp SC-----G----GGHHHHHHTEEE---EEEEEECCC
T ss_pred Cc-----h----HHHHHHHHHhcC---CCEEEEEec
Confidence 43 1 347888899999 898887654
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=82.10 E-value=3.7 Score=30.28 Aligned_cols=91 Identities=10% Similarity=-0.019 Sum_probs=56.9
Q ss_pred ccCCCeEEEeCC--cccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEec-C--Ccc------cCCCccEEEec
Q 030291 13 FQGLRSMVDVGG--GTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEG-D--MFQ------FIPPSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~--G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~-d--~~~------~~~~~D~v~~~ 80 (180)
++++++||-.|+ |.|..+..++... +++++++|.++ .++.+++...-..... + ..+ ....+|+++.+
T Consensus 143 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~i~~~~~~~~~d~vi~~ 221 (333)
T 1wly_A 143 VKPGDYVLIHAAAGGMGHIMVPWARHL-GATVIGTVSTEEKAETARKLGCHHTINYSTQDFAEVVREITGGKGVDVVYDS 221 (333)
T ss_dssp CCTTCEEEETTTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCCCEEEECCCHHHHHHHHHHhCCCCCeEEEEC
Confidence 567889999994 5577777777765 67899999854 4544443111111111 1 101 01258998865
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
..- ..++.+.+.|++ +|.++....
T Consensus 222 ~g~---------~~~~~~~~~l~~---~G~iv~~g~ 245 (333)
T 1wly_A 222 IGK---------DTLQKSLDCLRP---RGMCAAYGH 245 (333)
T ss_dssp SCT---------TTHHHHHHTEEE---EEEEEECCC
T ss_pred CcH---------HHHHHHHHhhcc---CCEEEEEec
Confidence 431 237778899999 888887654
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=81.62 E-value=12 Score=26.54 Aligned_cols=93 Identities=13% Similarity=0.026 Sum_probs=54.4
Q ss_pred CeEEEeCCcccHHHHHHHHHC--CCCeEEEeeCch-hhccCCCCCCeeEEecCCcc-cCCCccEEEeccccccCChHHHH
Q 030291 17 RSMVDVGGGTGAFARIISEAF--PGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQ-FIPPSDAFFFKTVFHFFDDEDCL 92 (180)
Q Consensus 17 ~~iLdiG~G~G~~~~~l~~~~--~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~-~~~~~D~v~~~~~l~~~~~~~~~ 92 (180)
.+||=.|+ |.++..+.+.+ .+.++++++-+. ...... ..+++++.+|+.+ ....+|+|+.........++...
T Consensus 6 ~~ilVtGa--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~~D~~d~~~~~~d~vi~~a~~~~~~~~~~~ 82 (286)
T 3ius_A 6 GTLLSFGH--GYTARVLSRALAPQGWRIIGTSRNPDQMEAIR-ASGAEPLLWPGEEPSLDGVTHLLISTAPDSGGDPVLA 82 (286)
T ss_dssp CEEEEETC--CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHH-HTTEEEEESSSSCCCCTTCCEEEECCCCBTTBCHHHH
T ss_pred CcEEEECC--cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHh-hCCCeEEEecccccccCCCCEEEECCCccccccHHHH
Confidence 57898994 87777766553 356788888643 222111 2568888888854 24468998886665443333333
Q ss_pred HHHHHHHHhhccCCCCcEEEEEE
Q 030291 93 KLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 93 ~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
.+++.+.+.-.. -..+++..
T Consensus 83 ~l~~a~~~~~~~---~~~~v~~S 102 (286)
T 3ius_A 83 ALGDQIAARAAQ---FRWVGYLS 102 (286)
T ss_dssp HHHHHHHHTGGG---CSEEEEEE
T ss_pred HHHHHHHhhcCC---ceEEEEee
Confidence 445554443122 25555544
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=81.00 E-value=2.2 Score=31.76 Aligned_cols=62 Identities=19% Similarity=0.139 Sum_probs=40.7
Q ss_pred CCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-CCCeeEEecCCcc----cCCCccEEEec
Q 030291 16 LRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-TDNLKYIEGDMFQ----FIPPSDAFFFK 80 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-~~~~~~~~~d~~~----~~~~~D~v~~~ 80 (180)
..+++|+-||.|.++..+.+.. -..+.++|..+ +.+-.+. .+... ++|+.+ ..+.+|+++..
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~aG-~~~v~~~e~d~~a~~t~~~N~~~~~--~~Di~~~~~~~~~~~D~l~~g 78 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMNFGEKP--EGDITQVNEKTIPDHDILCAG 78 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTT-CEEEEEECCCHHHHHHHHHHHSCCC--BSCGGGSCGGGSCCCSEEEEE
T ss_pred CCcEEEECCCcCHHHHHHHHCC-CeEEEEEeCCHHHHHHHHHHcCCCC--cCCHHHcCHhhCCCCCEEEEC
Confidence 4689999999999999998874 23467899854 4333322 11111 567754 24569999874
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=80.91 E-value=0.85 Score=35.41 Aligned_cols=34 Identities=26% Similarity=0.393 Sum_probs=26.7
Q ss_pred CCeEEEeCCcccHHHHHHHHHC---C--CCeEEEeeCch
Q 030291 16 LRSMVDVGGGTGAFARIISEAF---P--GIKCTVLDLPH 49 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~~---~--~~~~~~~D~~~ 49 (180)
+-+|+|+|+|.|.++..++... . ..+++.+|.|.
T Consensus 138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp 176 (432)
T 4f3n_A 138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSG 176 (432)
T ss_dssp CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTS
T ss_pred CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCH
Confidence 5689999999999988876542 1 24799999865
|
| >2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus} | Back alignment and structure |
|---|
Probab=80.55 E-value=3.5 Score=30.21 Aligned_cols=85 Identities=18% Similarity=0.144 Sum_probs=48.2
Q ss_pred HHHHHCCCCeEEEeeC----ch-hhccCCCCCCeeEE-ecCCcccC--CCccEEEecc----cccc-C--ChH-HH-HHH
Q 030291 32 IISEAFPGIKCTVLDL----PH-AVTDMPQTDNLKYI-EGDMFQFI--PPSDAFFFKT----VFHF-F--DDE-DC-LKL 94 (180)
Q Consensus 32 ~l~~~~~~~~~~~~D~----~~-~~~~a~~~~~~~~~-~~d~~~~~--~~~D~v~~~~----~l~~-~--~~~-~~-~~~ 94 (180)
.++.+.++.++..+|. +. .+++..-....++. ..|+..+. +.+|+|++.. .-|| - .|. .. .-+
T Consensus 157 ~~~~k~~g~~vl~v~~~~~~p~k~v~wi~Pi~GAt~~~~lDfg~p~~~~k~DvV~SDMApn~sGh~yqQC~DHarii~La 236 (320)
T 2hwk_A 157 SFVSKLKGRTVLVVGEKLSVPGKMVDWLSDRPEATFRARLDLGIPGDVPKYDIIFVNVRTPYKYHHYQQCEDHAIKLSML 236 (320)
T ss_dssp HHHHTSSCSEEEEEESCCCCTTSEEEEEESSTTCSEECCGGGCSCTTSCCEEEEEEECCCCCCSCHHHHHHHHHHHHHHT
T ss_pred HHHhhCCCcEEEEEecccccCCceeEeeccCCCceeecccccCCccccCcCCEEEEcCCCCCCCccccccchHHHHHHHH
Confidence 3555566777877762 22 33333334455555 67775532 4699999854 3344 1 121 11 124
Q ss_pred HHHHHHhhccCCCCcEEEEEEeeeC
Q 030291 95 LKKCREAIASNGERGKVLIIDIVID 119 (180)
Q Consensus 95 l~~~~~~L~p~~~~G~~~~~~~~~~ 119 (180)
+.-..++|+| ||.++.-.+...
T Consensus 237 l~fA~~vLkP---GGtfV~Kvygga 258 (320)
T 2hwk_A 237 TKKACLHLNP---GGTCVSIGYGYA 258 (320)
T ss_dssp HHHHGGGEEE---EEEEEEEECCCC
T ss_pred HHHHHHhcCC---CceEEEEEecCC
Confidence 5566699999 787777655433
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=80.35 E-value=3.2 Score=30.27 Aligned_cols=55 Identities=9% Similarity=0.208 Sum_probs=33.8
Q ss_pred CCCeeEEecCCccc---C--CCccEEEeccccc----cCCh--------------HHHHHHHHHHHHhhccCCCCcEEEE
Q 030291 57 TDNLKYIEGDMFQF---I--PPSDAFFFKTVFH----FFDD--------------EDCLKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 57 ~~~~~~~~~d~~~~---~--~~~D~v~~~~~l~----~~~~--------------~~~~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
..+++++++|..+. . .++|+|+++=-.. +... .....+++++.++|+| ||.+++
T Consensus 19 ~~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~---~G~l~i 95 (297)
T 2zig_A 19 FGVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVP---GGRLVI 95 (297)
T ss_dssp --CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEE
T ss_pred ccCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCC---CcEEEE
Confidence 34678888888652 2 3699999852221 1000 0123578899999999 888777
Q ss_pred E
Q 030291 114 I 114 (180)
Q Consensus 114 ~ 114 (180)
.
T Consensus 96 ~ 96 (297)
T 2zig_A 96 V 96 (297)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=80.31 E-value=4.5 Score=29.20 Aligned_cols=89 Identities=9% Similarity=0.025 Sum_probs=52.3
Q ss_pred CeEEEeCCcc-cH-HHHHHHHHC-CCCeEEEeeCch-hhccCCCCCCeeEEecCCcccCCCccEEEeccccccCChHHHH
Q 030291 17 RSMVDVGGGT-GA-FARIISEAF-PGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCL 92 (180)
Q Consensus 17 ~~iLdiG~G~-G~-~~~~l~~~~-~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~~~~~ 92 (180)
.+|.=||||. |. ++..+.+.. +...++..|.+. .++...+.-++.. ..|..+.....|+|+..- ++....
T Consensus 4 ~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~-~~~~~~~~~~aDvVilav-----~p~~~~ 77 (280)
T 3tri_A 4 SNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHT-TQDNRQGALNADVVVLAV-----KPHQIK 77 (280)
T ss_dssp SCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEE-ESCHHHHHSSCSEEEECS-----CGGGHH
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEE-eCChHHHHhcCCeEEEEe-----CHHHHH
Confidence 4677888876 33 444455542 222788999843 4444433223433 223323345689988743 445556
Q ss_pred HHHHHHHHh-hccCCCCcEEEEEE
Q 030291 93 KLLKKCREA-IASNGERGKVLIID 115 (180)
Q Consensus 93 ~~l~~~~~~-L~p~~~~G~~~~~~ 115 (180)
++++++... +++ +.++++.
T Consensus 78 ~vl~~l~~~~l~~----~~iiiS~ 97 (280)
T 3tri_A 78 MVCEELKDILSET----KILVISL 97 (280)
T ss_dssp HHHHHHHHHHHTT----TCEEEEC
T ss_pred HHHHHHHhhccCC----CeEEEEe
Confidence 889999988 876 6566643
|
| >1vpt_A VP39; RNA CAP, poly(A) polymerase, methyltransferase; HET: SAM; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1vp3_A* | Back alignment and structure |
|---|
Probab=80.01 E-value=3.6 Score=30.56 Aligned_cols=51 Identities=18% Similarity=0.245 Sum_probs=38.0
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCC----CCeEEEeeCchhhccCCCCCCeeEEec
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFP----GIKCTVLDLPHAVTDMPQTDNLKYIEG 65 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~----~~~~~~~D~~~~~~~a~~~~~~~~~~~ 65 (180)
++..|+=+|++.|.....|.+.++ ..++..+|....-...++..+++++..
T Consensus 75 ~g~~VVYaGsAPG~HI~fL~~lF~~l~~~lkwvLiDp~~f~~~Le~~~ni~li~~ 129 (348)
T 1vpt_A 75 DGATVVYIGSAPGTHIRYLRDHFYNLGVIIKWMLIDGRHHDPILNGLRDVTLVTR 129 (348)
T ss_dssp TTCEEEEESCSSCHHHHHHHHHHHHTTCCCEEEEEESSCCCGGGTTCTTEEEEEC
T ss_pred CCCeEEEeCcCCcchHHHHHHHhhhcCCceEEEEECCCchhhhhcCCCcEEeehh
Confidence 356999999999999988888765 479999998553334444557776655
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 180 | ||||
| d1fp2a2 | 244 | c.66.1.12 (A:109-352) Isoflavone O-methyltransfera | 3e-59 | |
| d1fp1d2 | 244 | c.66.1.12 (D:129-372) Chalcone O-methyltransferase | 2e-51 | |
| d1kyza2 | 243 | c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferuli | 8e-42 | |
| d1qzza2 | 256 | c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase | 7e-24 | |
| d1tw3a2 | 253 | c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf | 6e-20 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 8e-06 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 9e-05 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 4e-04 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 0.001 | |
| d1xtpa_ | 254 | c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa | 0.001 | |
| d2p7ia1 | 225 | c.66.1.41 (A:22-246) Hypothetical protein ECA1738 | 0.001 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 0.003 |
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 183 bits (464), Expect = 3e-59
Identities = 93/180 (51%), Positives = 130/180 (72%), Gaps = 1/180 (0%)
Query: 1 MATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNL 60
+ L ++DC +F GL S+VDVGGGTG A+II E FP +KC V D P V ++ ++NL
Sbjct: 66 LINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNL 125
Query: 61 KYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDE 120
Y+ GDMF IP +DA K + H + D+DCL++LKKC+EA+ ++G+RGKV IID+VID+
Sbjct: 126 TYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDK 185
Query: 121 KEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFGIKSLIEVYP 180
K+D+ ++T+ KLL D+ M + GKER E+EW LF+ AGF HYKI+P+ G SLIE+YP
Sbjct: 186 KKDENQVTQIKLLMDVNM-ACLNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 244
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 162 bits (412), Expect = 2e-51
Identities = 55/180 (30%), Positives = 96/180 (53%), Gaps = 4/180 (2%)
Query: 1 MATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNL 60
+ + F+G+ ++VDVGGG+G +I +P IK DLP + + P +
Sbjct: 67 TEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGI 126
Query: 61 KYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDE 120
+++ GDMF +P DA K V H + DE C++ L C +A+ GKV+I++ ++ E
Sbjct: 127 EHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKAL---SPNGKVIIVEFILPE 183
Query: 121 KEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIA-PIFGIKSLIEVY 179
+ + E ++ D M VGG+ERTE+++ L +GF+ +++A F ++E Y
Sbjct: 184 EPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFY 243
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 138 bits (348), Expect = 8e-42
Identities = 65/173 (37%), Positives = 96/173 (55%), Gaps = 4/173 (2%)
Query: 6 VKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYIEG 65
+ + F+GL+S+VDVGGGTGA I +P IK DLPH + D P ++++ G
Sbjct: 72 ILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGG 131
Query: 66 DMFQFIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDR 125
DMF IP +DA F K + H + DE CLK LK C EA+ + GKV++ + ++ D
Sbjct: 132 DMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEAL---PDNGKVIVAECILPVAPDSS 188
Query: 126 ELTESKLLFDIFM-NFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFGIKSLIE 177
T+ + D+ M N GGKERT++E+ L AGF +K+ ++E
Sbjct: 189 LATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIME 241
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 92.3 bits (228), Expect = 7e-24
Identities = 45/193 (23%), Positives = 72/193 (37%), Gaps = 19/193 (9%)
Query: 1 MATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVT-------D 53
+A D + +R ++DVGGG G I+ P ++ T+++L D
Sbjct: 68 LAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFAD 126
Query: 54 MPQTDNLKYIEGD-MFQFIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVL 112
D + EGD +D V + DED L +L+ C A+ G++L
Sbjct: 127 AGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALE---PGGRLL 183
Query: 113 IIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFGI 172
++D E D L D+ M +GG+ RT E L +AG
Sbjct: 184 VLDRADVE--GDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASERTSGST 241
Query: 173 K-----SLIEVYP 180
S++E
Sbjct: 242 TLPFDFSILEFTA 254
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Score = 82.0 bits (201), Expect = 6e-20
Identities = 40/181 (22%), Positives = 70/181 (38%), Gaps = 19/181 (10%)
Query: 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH--------AVTDMPQTDNLKYIE 64
+ +R ++DVGGG G FA I+ P + TVL++ +
Sbjct: 78 WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEG 137
Query: 65 GDMFQFIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDD 124
+DA V + D D +++L +C EA+ G++LI + +
Sbjct: 138 DFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALE---PGGRILIHERDDL---HE 191
Query: 125 RELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFG-----IKSLIEVY 179
E D+ M +GG RT ++W L +AG ++ + SL+ +
Sbjct: 192 NSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLA 251
Query: 180 P 180
P
Sbjct: 252 P 252
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 42.2 bits (98), Expect = 8e-06
Identities = 28/175 (16%), Positives = 55/175 (31%), Gaps = 27/175 (15%)
Query: 4 LLVK--DCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDL----------PHAV 51
L++K +CR R ++D+G G G A S +C +D
Sbjct: 7 LMIKTAECRA---EHR-VLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQE 60
Query: 52 TDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKV 111
+ + + D + H F D K +++ + + G+
Sbjct: 61 KGVENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVR--KAVREVARVLKQD---GRF 115
Query: 112 LIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKI 166
L++D E E + + +E + EW ++F + I
Sbjct: 116 LLVDHYAPEDPVLDEF----VNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDI 166
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 39.2 bits (90), Expect = 9e-05
Identities = 17/157 (10%), Positives = 37/157 (23%), Gaps = 21/157 (13%)
Query: 20 VDVGGGTGAFARIISEAFPGIKCTVLDL--------PHAVTDMPQTDNLKYIEGDMFQFI 71
+DV G G A + K DL +
Sbjct: 20 LDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPF 77
Query: 72 PPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESK 131
+ + + + G++L++D E +
Sbjct: 78 TDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKG---GQLLLVDNSAPEND------AFD 128
Query: 132 LLFDIFMNFNVGGKER--TEQEWGSLFVNAGFTHYKI 166
+ ++ R + +W + AGF ++
Sbjct: 129 VFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEEL 165
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 37.3 bits (85), Expect = 4e-04
Identities = 16/148 (10%), Positives = 34/148 (22%), Gaps = 11/148 (7%)
Query: 19 MVDVGGGTGAFARIISEAFP----GIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQFIPPS 74
++D+G G+G + GI + L A + + +
Sbjct: 37 ILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV 96
Query: 75 DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLF 134
S G +LI + + E+ ++ +
Sbjct: 97 ANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVS 156
Query: 135 DIFMNFNVGGKERTEQEWGSLFVNAGFT 162
T F + G+
Sbjct: 157 S-------TSDFLTLPGLVGAFDDLGYD 177
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 36.4 bits (83), Expect = 0.001
Identities = 24/177 (13%), Positives = 50/177 (28%), Gaps = 23/177 (12%)
Query: 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFP-GIKCTVLDLPHAVTDMPQTDNLKY 62
LV I + + +VD G G G ++ P G K T +D + +
Sbjct: 17 FLVNTVWKITKPVH-IVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL 75
Query: 63 IEGDMFQFIPPSDAFFFKTVFH------FFDDEDCLKLLKKCREAIASNGERGKVLIID- 115
F ++ +L+K ++ GK++ +
Sbjct: 76 PYDSEFLEGDATEIELNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKG---GKIICFEP 132
Query: 116 ----------IVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFT 162
+ +++ + +L + LF+ N G + G
Sbjct: 133 HWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRN-GKDGNIGMKIPIYLSELGVK 188
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Score = 36.1 bits (82), Expect = 0.001
Identities = 19/176 (10%), Positives = 43/176 (24%), Gaps = 18/176 (10%)
Query: 9 CRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAV----TDMPQTDNLKYIE 64
G +D G G G + + + + H + ++ K+I
Sbjct: 87 ASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFIL 146
Query: 65 GDMFQFIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDD 124
M P + + + +K + + G + +
Sbjct: 147 ASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRF- 205
Query: 125 RELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFGI-KSLIEVY 179
++ R++ + LF +G K A L +
Sbjct: 206 ------------LVDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQEEWPTDLFPLK 249
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Score = 36.1 bits (82), Expect = 0.001
Identities = 25/179 (13%), Positives = 52/179 (29%), Gaps = 16/179 (8%)
Query: 1 MATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNL 60
M +V+ P F+ +++++G G F + E F T ++ Q
Sbjct: 7 MHPFMVRAFTPFFRP-GNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLK 63
Query: 61 KYIEGDMFQFIPPSDAFFFKTVFHFFDDE---DCLKLLKKCREAIASNGERGKVLIIDIV 117
I +F + + E D + LLK+ + + G G++ + +
Sbjct: 64 DGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEG--GRLFL--VC 119
Query: 118 IDEKEDDRELTESKLLFDIFMNFNVGGKER------TEQEWGSLFVNAGFTHYKIAPIF 170
+ R++ + AG + IF
Sbjct: 120 PNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRSGIF 178
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 34.6 bits (78), Expect = 0.003
Identities = 13/133 (9%), Positives = 34/133 (25%), Gaps = 14/133 (10%)
Query: 21 DVGGGTGAFARIISEAFPGIKCTVLDLPHAV-------TDMPQTDNLKYIEGDMFQFIPP 73
D+G G G + ++ + + + ++ + F
Sbjct: 36 DLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGE 95
Query: 74 SDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDD----RELTE 129
D V F + + L+ + G LI+ + +
Sbjct: 96 YDFILSTVVMMFLEAQTIPGLIANMQRCTKPG---GYNLIVAAMDTPDFPCTVGFPFAFK 152
Query: 130 SKLLFDIFMNFNV 142
L + +++
Sbjct: 153 EGELRRYYEGWDM 165
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 180 | |||
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.96 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.96 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.96 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.95 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.94 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.91 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.9 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.9 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.89 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.89 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.89 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.89 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.86 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.85 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.85 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.84 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.84 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.83 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.81 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.81 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.8 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.79 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.78 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.78 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.75 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.73 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.73 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.71 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.71 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.69 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.65 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.64 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.62 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.62 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.6 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.59 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.58 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.55 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.54 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.54 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.53 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.52 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.52 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.46 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.46 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.45 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.45 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.43 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.38 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.35 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.33 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.33 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.29 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.29 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.26 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.24 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.17 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.13 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.97 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.97 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.86 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.85 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.83 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.82 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.81 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.8 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.8 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.8 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.74 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.74 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.69 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.66 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.64 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.63 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.62 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.61 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.59 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.59 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.58 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.56 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.53 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.45 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.41 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.34 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.33 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.31 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.27 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.24 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.24 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.24 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.19 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.02 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 98.01 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 97.62 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 97.62 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 97.6 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 97.55 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 97.41 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.29 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 97.25 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.23 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 97.13 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 97.02 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.99 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.94 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.86 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.86 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.85 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.82 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 96.82 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 96.76 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 96.66 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.66 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 96.57 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 96.42 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 96.41 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 96.27 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.19 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 96.14 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 95.93 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 95.81 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 95.56 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 95.54 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.39 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.14 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 94.59 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 94.41 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 94.18 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 94.06 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 93.92 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 93.62 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 92.67 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 91.92 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 91.12 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 91.0 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 90.48 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 90.43 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 88.81 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 87.83 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 87.8 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 87.1 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 85.7 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 84.33 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 84.13 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 83.94 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 83.75 | |
| d1vpta_ | 297 | Polymerase regulatory subunit VP39 {Vaccinia virus | 81.95 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 80.87 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 80.37 |
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.96 E-value=9.1e-29 Score=177.54 Aligned_cols=164 Identities=54% Similarity=1.015 Sum_probs=144.6
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCCCCCeeEEecCCcccCCCccEEEeccccccCChHHHH
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCL 92 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~~~~~ 92 (180)
+.+..+|||||||+|..+..+++.+|+.+++++|++++++.+....|+++..+|++++.|.+|++++..+||++++++..
T Consensus 78 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~rv~~~~gD~f~~~p~aD~~~l~~vLHdw~d~~~~ 157 (244)
T d1fp2a2 78 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCL 157 (244)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHH
T ss_pred ccCceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHhCcccCceEEEecCcccCCCCCcEEEEEeecccCChHHHH
Confidence 56778999999999999999999999999999999999888888899999999999888889999999999999999999
Q ss_pred HHHHHHHHhhccCCCC---cEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEEEEeec
Q 030291 93 KLLKKCREAIASNGER---GKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPI 169 (180)
Q Consensus 93 ~~l~~~~~~L~p~~~~---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 169 (180)
++|++++++|+| | |++++.+...++..............+..+.. .+++.+|.++|.++++++||+.++++..
T Consensus 158 ~iL~~~~~al~p---gg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~-~~G~ert~~e~~~ll~~AGf~~~~i~~~ 233 (244)
T d1fp2a2 158 RILKKCKEAVTN---DGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-LNGKERNEEEWKKLFIEAGFQHYKISPL 233 (244)
T ss_dssp HHHHHHHHHHSG---GGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-GTCCCEEHHHHHHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHHHcCc---ccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHh-CCCcCCCHHHHHHHHHHcCCceEEEEEC
Confidence 999999999999 6 88999999887766554333333444544433 4678899999999999999999999999
Q ss_pred CCceeEEEEeC
Q 030291 170 FGIKSLIEVYP 180 (180)
Q Consensus 170 ~~~~~~~~~~~ 180 (180)
.+..++|+++|
T Consensus 234 ~~~~svIE~~p 244 (244)
T d1fp2a2 234 TGFLSLIEIYP 244 (244)
T ss_dssp ETTEEEEEEEC
T ss_pred CCCeEEEEEeC
Confidence 99999999998
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.96 E-value=7e-29 Score=178.06 Aligned_cols=173 Identities=32% Similarity=0.640 Sum_probs=146.9
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCCCCCeeEEecCCcccCCCccEEEecccc
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVF 83 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~d~~~~~~~~D~v~~~~~l 83 (180)
.+++.++ .+.+..+|||||||+|.++..+++++|+.+++.+|++++++.+....++++..+|++++.|..|++++..++
T Consensus 71 ~l~~~~~-~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~ri~~~~gd~~~~~p~~D~~~l~~vL 149 (244)
T d1fp1d2 71 RMLEIYT-GFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVC 149 (244)
T ss_dssp HHHHHCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCEEEEEEESSG
T ss_pred HHHHhcc-cccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhhccCCCCCeEEecCCcccccccceEEEEehhh
Confidence 3445554 246789999999999999999999999999999999998888888899999999999988889999999999
Q ss_pred ccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeE
Q 030291 84 HFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTH 163 (180)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 163 (180)
|++++++...+|++++++|+| ||.+++.|...++..............+..++...+++.+|.++|.++++++||+.
T Consensus 150 h~~~de~~~~iL~~~~~aL~p---gg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~AGF~~ 226 (244)
T d1fp1d2 150 HNWSDEKCIEFLSNCHKALSP---NGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSK 226 (244)
T ss_dssp GGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSE
T ss_pred hhCCHHHHHHHHHHHHHHcCC---CcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHcCCCc
Confidence 999999999999999999999 99999999987765443322223334455555456778899999999999999999
Q ss_pred EEEeec-CCceeEEEEeC
Q 030291 164 YKIAPI-FGIKSLIEVYP 180 (180)
Q Consensus 164 ~~~~~~-~~~~~~~~~~~ 180 (180)
+++... ++..++|+++|
T Consensus 227 v~v~~~~~~~~~viE~~K 244 (244)
T d1fp1d2 227 FQVACRAFNSLGVMEFYK 244 (244)
T ss_dssp EEEEEEETTTEEEEEEEC
T ss_pred eEEEecCCCCEEEEEEeC
Confidence 998755 67889999987
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.96 E-value=9.5e-29 Score=178.93 Aligned_cols=170 Identities=28% Similarity=0.481 Sum_probs=135.3
Q ss_pred ccccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCC-------CCCeeEEecCCcccCC-Cc
Q 030291 3 TLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ-------TDNLKYIEGDMFQFIP-PS 74 (180)
Q Consensus 3 ~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~-------~~~~~~~~~d~~~~~~-~~ 74 (180)
+.+++.++ +.+..+|||||||+|.++..+++.+|+.+++++|++++++.+++ ..++++..+|+++..+ +|
T Consensus 70 ~~~~~~~d--~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~ 147 (253)
T d1tw3a2 70 DAPAAAYD--WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKA 147 (253)
T ss_dssp HHHHHHSC--CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCE
T ss_pred HHHHhhcC--CccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccCHHHHHHHHHHHHHhhcccchhhccccchhhcccch
Confidence 45667777 88889999999999999999999999999999999777777763 5789999999977554 69
Q ss_pred cEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHH
Q 030291 75 DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGS 154 (180)
Q Consensus 75 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (180)
|+|++..++||+++++..++|++++++||| ||.+++.+.......... ......+..++...+++.++.++|.+
T Consensus 148 D~v~~~~vlh~~~d~~~~~~L~~~~~~LkP---GG~l~i~e~~~~~~~~~~---~~~~~~dl~~~~~~~g~~rt~~e~~~ 221 (253)
T d1tw3a2 148 DAIILSFVLLNWPDHDAVRILTRCAEALEP---GGRILIHERDDLHENSFN---EQFTELDLRMLVFLGGALRTREKWDG 221 (253)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHTEEE---EEEEEEEECCBCGGGCCS---HHHHHHHHHHHHHHSCCCCBHHHHHH
T ss_pred hheeeccccccCCchhhHHHHHHHHHhcCC---CcEEEEEeccCCCCCcch---hHHHHhhHHHHhhCCCcCCCHHHHHH
Confidence 999999999999999888999999999999 999999987554332221 22223333344445667889999999
Q ss_pred HHHHcCCeEEEEeecCC-----ceeEEEEeC
Q 030291 155 LFVNAGFTHYKIAPIFG-----IKSLIEVYP 180 (180)
Q Consensus 155 ~l~~aGf~~~~~~~~~~-----~~~~~~~~~ 180 (180)
+++++||+++++...++ ...+++..|
T Consensus 222 ll~~AGf~~~~v~~~~~p~~~~~~~li~~~P 252 (253)
T d1tw3a2 222 LAASAGLVVEEVRQLPSPTIPYDLSLLVLAP 252 (253)
T ss_dssp HHHHTTEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred HHHHCCCeEEEEEECCCCCCCccEEEEEEec
Confidence 99999999998887643 245666554
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.95 E-value=1.8e-28 Score=177.55 Aligned_cols=171 Identities=25% Similarity=0.385 Sum_probs=135.9
Q ss_pred ccccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCC-------CCCeeEEecCCcccCC-Cc
Q 030291 3 TLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ-------TDNLKYIEGDMFQFIP-PS 74 (180)
Q Consensus 3 ~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~-------~~~~~~~~~d~~~~~~-~~ 74 (180)
..+++.++ +.+.++|||||||+|.++..+++.+|+.+++++|++++++.+++ ..++++..+|++++.| .+
T Consensus 71 ~~~~~~~d--~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~ 148 (256)
T d1qzza2 71 EAPADAYD--WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTA 148 (256)
T ss_dssp HHHHHTSC--CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCE
T ss_pred HHHHhcCC--CccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccccccccc
Confidence 34666777 78889999999999999999999999999999999877766653 5789999999987665 59
Q ss_pred cEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHH
Q 030291 75 DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGS 154 (180)
Q Consensus 75 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (180)
|+|++.+++|++++++..++|++++++|+| ||++++.+...+...... .......+..++...+++.+|.++|.+
T Consensus 149 D~v~~~~vLh~~~d~~~~~lL~~i~~~Lkp---gG~llI~d~~~~~~~~~~--~~~~~~~d~~ml~~~~g~~rt~~e~~~ 223 (256)
T d1qzza2 149 DVVLLSFVLLNWSDEDALTILRGCVRALEP---GGRLLVLDRADVEGDGAD--RFFSTLLDLRMLTFMGGRVRTRDEVVD 223 (256)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEECCH---------HHHHHHHHHHHHHHHSCCCCCHHHHHH
T ss_pred hhhhccccccccCcHHHHHHHHHHHhhcCC---cceeEEEEeccCCCCccc--HHHHHHHHHHHHhhCCCccCCHHHHHH
Confidence 999999999999999988999999999999 999999997654432221 122333444444455678899999999
Q ss_pred HHHHcCCeEEEEeecCC-----ceeEEEEeC
Q 030291 155 LFVNAGFTHYKIAPIFG-----IKSLIEVYP 180 (180)
Q Consensus 155 ~l~~aGf~~~~~~~~~~-----~~~~~~~~~ 180 (180)
+++++||+++++...++ ..+++++.|
T Consensus 224 ll~~AGf~~~~~~~~~~~~~~~~~~v~E~~~ 254 (256)
T d1qzza2 224 LAGSAGLALASERTSGSTTLPFDFSILEFTA 254 (256)
T ss_dssp HHHTTTEEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred HHHHCCCceeEEEEeCCcCccCceEEEEEEe
Confidence 99999999999987644 357777764
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.94 E-value=2.1e-26 Score=165.41 Aligned_cols=171 Identities=37% Similarity=0.639 Sum_probs=142.8
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCCCCCeeEEecCCcccCCCccEEEeccccc
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVFH 84 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~d~~~~~~~~D~v~~~~~l~ 84 (180)
++..+++ ..+..+|||||||+|..+..+++.+|+.+++++|+++.++.++...++++..+|++++.|..|+++..+++|
T Consensus 72 ~~~~~~~-~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~r~~~~~~d~~~~~P~ad~~~l~~vlh 150 (243)
T d1kyza2 72 ILETYTG-FEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSIPKADAVFMKWICH 150 (243)
T ss_dssp HHHHCCT-TSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTTCCCCTTEEEEECCTTTCCCCCSCEECSSSST
T ss_pred HHHhccc-ccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhhcccCCceEEecccccccCCCcceEEEEEEee
Confidence 4455541 355789999999999999999999999999999999988888889999999999988888899999999999
Q ss_pred cCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEee-cCCcccCHHHHHHHHHHcCCeE
Q 030291 85 FFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFN-VGGKERTEQEWGSLFVNAGFTH 163 (180)
Q Consensus 85 ~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~aGf~~ 163 (180)
.+++++...+|++++++|+| ||++++.+...++..............+..++.. .+++.++.++|.+++++|||+.
T Consensus 151 ~~~d~~~~~iL~~~~~al~p---gg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~ 227 (243)
T d1kyza2 151 DWSDEHCLKFLKNCYEALPD---NGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQG 227 (243)
T ss_dssp TSCHHHHHHHHHHHHHHCCS---SSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSC
T ss_pred cCCHHHHHHHHHHHHHhcCC---CceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCc
Confidence 99999999999999999999 9999999988765544322222333445444332 3678899999999999999999
Q ss_pred EEEeecCCceeEEEEe
Q 030291 164 YKIAPIFGIKSLIEVY 179 (180)
Q Consensus 164 ~~~~~~~~~~~~~~~~ 179 (180)
+++....+..++|++.
T Consensus 228 vkv~~~~~~~~viE~~ 243 (243)
T d1kyza2 228 FKVHCNAFNTYIMEFL 243 (243)
T ss_dssp EEEEEEETTEEEEEEC
T ss_pred EEEEEeCCCCEEEEeC
Confidence 9999888888888863
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.91 E-value=1e-24 Score=155.36 Aligned_cols=152 Identities=16% Similarity=0.250 Sum_probs=115.6
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcc-cC--CC
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ-FI--PP 73 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~-~~--~~ 73 (180)
.+++... ++++.+|||||||+|.++..+++. +.+++++|+++ |++.|++ ..++++.++|..+ +. .+
T Consensus 6 ~ll~~~~--l~~~~rVLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~ 81 (231)
T d1vl5a_ 6 KLMQIAA--LKGNEEVLDVATGGGHVANAFAPF--VKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDER 81 (231)
T ss_dssp HHHHHHT--CCSCCEEEEETCTTCHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTC
T ss_pred HHHHhcC--CCCcCEEEEecccCcHHHHHHHHh--CCEEEEEECCHHHHhhhhhcccccccccccccccccccccccccc
Confidence 4566667 889999999999999999999988 45799999976 8888764 5789999999965 33 36
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHH
Q 030291 74 SDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWG 153 (180)
Q Consensus 74 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (180)
||+|++..++||++++. .+++++.++|+| ||.+++.++..+.........+ .... .....+.+.++.++|.
T Consensus 82 fD~v~~~~~l~~~~d~~--~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~ 152 (231)
T d1vl5a_ 82 FHIVTCRIAAHHFPNPA--SFVSEAYRVLKK---GGQLLLVDNSAPENDAFDVFYN---YVEK-ERDYSHHRAWKKSDWL 152 (231)
T ss_dssp EEEEEEESCGGGCSCHH--HHHHHHHHHEEE---EEEEEEEEEEBCSSHHHHHHHH---HHHH-HHCTTCCCCCBHHHHH
T ss_pred cccccccccccccCCHH--HHHHHHHHhcCC---CcEEEEEeCCCCCCHHHHHHHH---HHHh-hcccCcccCCCHHHHH
Confidence 99999999999999988 779999999999 9999998876654321111111 1110 0011233567889999
Q ss_pred HHHHHcCCeEEEEee
Q 030291 154 SLFVNAGFTHYKIAP 168 (180)
Q Consensus 154 ~~l~~aGf~~~~~~~ 168 (180)
++++++||+++++..
T Consensus 153 ~~l~~aGf~~~~~~~ 167 (231)
T d1vl5a_ 153 KMLEEAGFELEELHC 167 (231)
T ss_dssp HHHHHHTCEEEEEEE
T ss_pred HHHHHCCCEEEEEEE
Confidence 999999999887654
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.90 E-value=2.2e-23 Score=152.69 Aligned_cols=150 Identities=18% Similarity=0.249 Sum_probs=116.3
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcc-cC--CC
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQ-FI--PP 73 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~-~~--~~ 73 (180)
+....+ ++++.+|||||||+|.++..+++.+ +++++++|+++ +++.+++ ..++++.++|+.+ +. .+
T Consensus 59 l~~~~~--l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~s 135 (282)
T d2o57a1 59 LAMTGV--LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNS 135 (282)
T ss_dssp HHHTTC--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTC
T ss_pred HHHhcC--CCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhcccccccccccccccccccccccccccc
Confidence 334445 7889999999999999999998875 67899999976 8888774 4689999999966 33 36
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHH
Q 030291 74 SDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWG 153 (180)
Q Consensus 74 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (180)
||+|++..+++|+++.. .+++++.++||| ||.+++.++................... .....+.+++.
T Consensus 136 fD~V~~~~~l~h~~d~~--~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~s~~~~~ 203 (282)
T d2o57a1 136 YDFIWSQDAFLHSPDKL--KVFQECARVLKP---RGVMAITDPMKEDGIDKSSIQPILDRIK-------LHDMGSLGLYR 203 (282)
T ss_dssp EEEEEEESCGGGCSCHH--HHHHHHHHHEEE---EEEEEEEEEEECTTCCGGGGHHHHHHHT-------CSSCCCHHHHH
T ss_pred cchhhccchhhhccCHH--HHHHHHHHhcCC---CcEEEEEEeecCCCCchhHHHHHHHHhc-------cCCCCCHHHHH
Confidence 99999999999999887 789999999999 9999999887765543321211111111 11345789999
Q ss_pred HHHHHcCCeEEEEeec
Q 030291 154 SLFVNAGFTHYKIAPI 169 (180)
Q Consensus 154 ~~l~~aGf~~~~~~~~ 169 (180)
++++++||+.+.+.+.
T Consensus 204 ~~l~~~Gf~~i~~~d~ 219 (282)
T d2o57a1 204 SLAKECGLVTLRTFSR 219 (282)
T ss_dssp HHHHHTTEEEEEEEEC
T ss_pred HHHHHcCCceEEEEEC
Confidence 9999999998877654
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.90 E-value=3.1e-23 Score=147.21 Aligned_cols=163 Identities=18% Similarity=0.189 Sum_probs=118.7
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHH--CCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcc-cCCCccEEEecc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEA--FPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQ-FIPPSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~--~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~-~~~~~D~v~~~~ 81 (180)
.+++.+|||||||+|..+..+++. .|+++++|+|+|+ |++.|++ ..++.+..+|+.+ +.+.+|++++..
T Consensus 37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~ 116 (225)
T d1im8a_ 37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNF 116 (225)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEES
T ss_pred cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEee
Confidence 467889999999999999999986 4788999999976 9999874 4577888888865 445799999999
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhh-hhhhhcc-ceeeEee-----------cCCcccC
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDREL-TESKLLF-DIFMNFN-----------VGGKERT 148 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~-----------~~~~~~~ 148 (180)
++||++.++..++|++++++|+| ||.+++.+...+........ ......+ ....... .....++
T Consensus 117 ~l~~~~~~d~~~~l~~i~~~Lkp---gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 193 (225)
T d1im8a_ 117 TLQFLPPEDRIALLTKIYEGLNP---NGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEVSQKRTALENVMRTDS 193 (225)
T ss_dssp CGGGSCGGGHHHHHHHHHHHEEE---EEEEEEEEECCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCCC
T ss_pred eccccChhhHHHHHHHHHHhCCC---CceeecccccccccchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccCCCC
Confidence 99999877777999999999999 99999998776554332111 0000000 0000000 0013468
Q ss_pred HHHHHHHHHHcCCeEEEEee-cCCceeEEEE
Q 030291 149 EQEWGSLFVNAGFTHYKIAP-IFGIKSLIEV 178 (180)
Q Consensus 149 ~~~~~~~l~~aGf~~~~~~~-~~~~~~~~~~ 178 (180)
.+++.++|+++||+.++++. ...+.++++.
T Consensus 194 ~~~~~~~L~~aGF~~v~~~~~~~~f~~~~a~ 224 (225)
T d1im8a_ 194 IETHKVRLKNVGFSQVELWFQCFNFGSMIAV 224 (225)
T ss_dssp HHHHHHHHHHHTCSEEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHcCCCceEEeeeeCceEEEEEE
Confidence 89999999999999988763 3445565543
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.89 E-value=1.8e-23 Score=149.27 Aligned_cols=152 Identities=19% Similarity=0.305 Sum_probs=115.6
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcc-cC--CC
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ-FI--PP 73 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~-~~--~~ 73 (180)
.+++..+ ++++.+|||||||+|.++..+++.. .+++++|+|+ |++.|++ ..++.++++|+.+ +. .+
T Consensus 7 ~l~~~~~--~~~~~rILDiGcGtG~~~~~la~~~--~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 82 (234)
T d1xxla_ 7 LMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDS 82 (234)
T ss_dssp HHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTC
T ss_pred HHHHHhC--CCCCCEEEEeCCcCcHHHHHHHHhC--CeEEEEeCChhhhhhhhhhhcccccccccccccccccccccccc
Confidence 3566777 8999999999999999999999874 5799999976 8888864 4689999999965 22 36
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHH
Q 030291 74 SDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWG 153 (180)
Q Consensus 74 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (180)
||+|++..+++|++++. .+++++.++|+| ||.+++.+...+.......+.. ..... ....+.+.++..+|.
T Consensus 83 fD~v~~~~~l~~~~d~~--~~l~~~~r~Lkp---gG~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~ 153 (234)
T d1xxla_ 83 FDIITCRYAAHHFSDVR--KAVREVARVLKQ---DGRFLLVDHYAPEDPVLDEFVN--HLNRL--RDPSHVRESSLSEWQ 153 (234)
T ss_dssp EEEEEEESCGGGCSCHH--HHHHHHHHHEEE---EEEEEEEEECBCSSHHHHHHHH--HHHHH--HCTTCCCCCBHHHHH
T ss_pred cceeeeeceeecccCHH--HHHHHHHHeeCC---CcEEEEEEcCCCCCHHHHHHHH--HHHhh--CCCcccccCCHHHHH
Confidence 99999999999999988 889999999999 8999998876554322111111 00000 011233556889999
Q ss_pred HHHHHcCCeEEEEee
Q 030291 154 SLFVNAGFTHYKIAP 168 (180)
Q Consensus 154 ~~l~~aGf~~~~~~~ 168 (180)
.+++++||.+.++..
T Consensus 154 ~~~~~~gf~~~~~~~ 168 (234)
T d1xxla_ 154 AMFSANQLAYQDIQK 168 (234)
T ss_dssp HHHHHTTEEEEEEEE
T ss_pred HHHHHCCCceeEEEE
Confidence 999999998766543
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=2.8e-23 Score=147.15 Aligned_cols=141 Identities=13% Similarity=0.177 Sum_probs=111.0
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcc-cC--CCccEEEeccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ-FI--PPSDAFFFKTV 82 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~-~~--~~~D~v~~~~~ 82 (180)
..+..+|||||||+|.++..+++.. ..+++++|+++ |++.|++ ..++++.++|+.+ +. ..||+|++..+
T Consensus 58 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~ 136 (222)
T d2ex4a1 58 KTGTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV 136 (222)
T ss_dssp CCCCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESC
T ss_pred CCCCCEEEEeccCCCHhhHHHHHhc-CCEEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence 4567899999999999999887665 34799999976 9988864 3567999999966 22 36999999999
Q ss_pred cccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCe
Q 030291 83 FHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFT 162 (180)
Q Consensus 83 l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 162 (180)
+||+++++..+++++++++|+| ||.+++.+......... ........++.++|.++++++||+
T Consensus 137 l~h~~~~~~~~~l~~i~~~Lk~---~G~~~i~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~l~~~aGf~ 199 (222)
T d2ex4a1 137 IGHLTDQHLAEFLRRCKGSLRP---NGIIVIKDNMAQEGVIL--------------DDVDSSVCRDLDVVRRIICSAGLS 199 (222)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEBSSSEEE--------------ETTTTEEEEBHHHHHHHHHHTTCC
T ss_pred cccchhhhhhhHHHHHHHhcCC---cceEEEEEccccccccc--------------ccCCceeeCCHHHHHHHHHHcCCE
Confidence 9999998888899999999999 99999988765443110 001112346889999999999999
Q ss_pred EEEEeecCC
Q 030291 163 HYKIAPIFG 171 (180)
Q Consensus 163 ~~~~~~~~~ 171 (180)
+++.....+
T Consensus 200 ii~~~~q~~ 208 (222)
T d2ex4a1 200 LLAEERQEN 208 (222)
T ss_dssp EEEEEECCS
T ss_pred EEEEEEeCC
Confidence 988776543
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.89 E-value=6.2e-23 Score=148.09 Aligned_cols=148 Identities=17% Similarity=0.245 Sum_probs=112.9
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----CCCeeEEecCCccc-C--CCccE
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----TDNLKYIEGDMFQF-I--PPSDA 76 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----~~~~~~~~~d~~~~-~--~~~D~ 76 (180)
+++.++ ..+..+|||+|||+|..+..++..+ ..+++++|+++ |++.|++ ..++++.++|+.+. . ..||+
T Consensus 85 fl~~l~--~~~~~~vLD~GcG~G~~t~~ll~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 161 (254)
T d1xtpa_ 85 FIASLP--GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDL 161 (254)
T ss_dssp HHHTST--TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEE
T ss_pred HHhhCC--CCCCCeEEEecccCChhhHHHHhhc-CceEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccce
Confidence 344554 5678899999999999999887664 33799999976 9988875 45689999999652 2 25999
Q ss_pred EEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHH
Q 030291 77 FFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLF 156 (180)
Q Consensus 77 v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 156 (180)
|++..+++|+++++..++|++++++|+| ||.+++.+........ ..+. ..+...++.++|.+++
T Consensus 162 I~~~~vl~hl~d~d~~~~l~~~~~~Lkp---gG~iii~e~~~~~~~~---------~~d~----~d~~~~rs~~~~~~l~ 225 (254)
T d1xtpa_ 162 IVIQWTAIYLTDADFVKFFKHCQQALTP---NGYIFFKENCSTGDRF---------LVDK----EDSSLTRSDIHYKRLF 225 (254)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEBC--CCE---------EEET----TTTEEEBCHHHHHHHH
T ss_pred EEeeccccccchhhhHHHHHHHHHhcCC---CcEEEEEecCCCCCcc---------eecc----cCCceeCCHHHHHHHH
Confidence 9999999999999888999999999999 9999998765443211 0000 0112346889999999
Q ss_pred HHcCCeEEEEeecCC
Q 030291 157 VNAGFTHYKIAPIFG 171 (180)
Q Consensus 157 ~~aGf~~~~~~~~~~ 171 (180)
+++||++++.....+
T Consensus 226 ~~aGf~ii~~~~q~~ 240 (254)
T d1xtpa_ 226 NESGVRVVKEAFQEE 240 (254)
T ss_dssp HHHTCCEEEEEECTT
T ss_pred HHcCCEEEEEEeeCC
Confidence 999999988776544
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=6e-23 Score=147.49 Aligned_cols=149 Identities=13% Similarity=0.150 Sum_probs=116.3
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccC--CCc
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFI--PPS 74 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~--~~~ 74 (180)
+.+.+. ++++.+|||||||+|..+..+++.. +++++++|+++ +++.+++ ..++++.++|+.+.. .+|
T Consensus 25 l~~~~~--l~pg~~VLDiGCG~G~~~~~la~~~-~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~~~f 101 (245)
T d1nkva_ 25 LGRVLR--MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKC 101 (245)
T ss_dssp HHHHTC--CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSCE
T ss_pred HHHHcC--CCCCCEEEEEcCCCCHHHHHHHHhc-CCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccccCce
Confidence 455666 8889999999999999999998876 57999999976 8887764 467999999996633 369
Q ss_pred cEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHH
Q 030291 75 DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGS 154 (180)
Q Consensus 75 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (180)
|+|++..+++|+++.. .++++++++||| ||.+++.+................... ......+..++..
T Consensus 102 D~v~~~~~~~~~~d~~--~~l~~~~r~LkP---GG~l~i~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 169 (245)
T d1nkva_ 102 DVAACVGATWIAGGFA--GAEELLAQSLKP---GGIMLIGEPYWRQLPATEEIAQACGVS-------STSDFLTLPGLVG 169 (245)
T ss_dssp EEEEEESCGGGTSSSH--HHHHHHTTSEEE---EEEEEEEEEEETTCCSSHHHHHTTTCS-------CGGGSCCHHHHHH
T ss_pred eEEEEEehhhccCCHH--HHHHHHHHHcCc---CcEEEEEeccccCCCChHHHHHHhccC-------CCcccCCHHHHHH
Confidence 9999999999999887 789999999999 999999887765544332221111111 1124568899999
Q ss_pred HHHHcCCeEEEEee
Q 030291 155 LFVNAGFTHYKIAP 168 (180)
Q Consensus 155 ~l~~aGf~~~~~~~ 168 (180)
.++++||++++...
T Consensus 170 ~~~~aG~~~v~~~~ 183 (245)
T d1nkva_ 170 AFDDLGYDVVEMVL 183 (245)
T ss_dssp HHHTTTBCCCEEEE
T ss_pred HHHHcCCEEEEEEe
Confidence 99999999887643
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.86 E-value=1e-21 Score=137.66 Aligned_cols=138 Identities=17% Similarity=0.150 Sum_probs=102.7
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcc-cC--CCccEEEeccccccCChH
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQ-FI--PPSDAFFFKTVFHFFDDE 89 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~-~~--~~~D~v~~~~~l~~~~~~ 89 (180)
.+..+|||||||+|.++..+. +++++|+++ +++.+++ .++++.++|+.+ +. .+||+|++..+++|++++
T Consensus 35 ~~~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~-~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d~ 107 (208)
T d1vlma_ 35 LPEGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARK-RGVFVLKGTAENLPLKDESFDFALMVTTICFVDDP 107 (208)
T ss_dssp CCSSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHH-TTCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH
T ss_pred CCCCeEEEECCCCcccccccc------eEEEEeCChhhcccccc-ccccccccccccccccccccccccccccccccccc
Confidence 456789999999999887762 368999976 8888875 378999999955 23 369999999999999988
Q ss_pred HHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEEEEee
Q 030291 90 DCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAP 168 (180)
Q Consensus 90 ~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 168 (180)
. ++++++.++|+| ||.+++.++...... ...............+.+.++.+++.++|+++||+++++..
T Consensus 108 ~--~~l~~~~~~L~p---gG~l~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~~ 176 (208)
T d1vlma_ 108 E--RALKEAYRILKK---GGYLIVGIVDRESFL-----GREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQ 176 (208)
T ss_dssp H--HHHHHHHHHEEE---EEEEEEEEECSSSHH-----HHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred c--cchhhhhhcCCC---CceEEEEecCCcchh-----HHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEEEEE
Confidence 7 789999999999 899988876543211 11111111111112344678999999999999999887764
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.85 E-value=1.3e-21 Score=142.63 Aligned_cols=161 Identities=18% Similarity=0.240 Sum_probs=120.5
Q ss_pred ccccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccCCCc
Q 030291 3 TLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFIPPS 74 (180)
Q Consensus 3 ~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~~~~ 74 (180)
+.+++.+. ++++.+|||||||+|.++..+++.+ +++++++|+|+ +++.+++ ..++.+...|..+....|
T Consensus 42 ~~~~~~l~--l~~g~~VLDiGCG~G~~a~~~a~~~-g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~f 118 (280)
T d2fk8a1 42 DLNLDKLD--LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPV 118 (280)
T ss_dssp HHHHTTSC--CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCC
T ss_pred HHHHHHcC--CCCCCEEEEecCCchHHHHHHHHhC-ceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhccch
Confidence 45677787 8999999999999999999888776 67999999976 7777653 456778888885555679
Q ss_pred cEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCch----hh-hhhhhcccee-eEeecCCcccC
Q 030291 75 DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDR----EL-TESKLLFDIF-MNFNVGGKERT 148 (180)
Q Consensus 75 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~-~~~~~~~~~~~ 148 (180)
|.|++..+++|+++.....+++++.++||| ||.+++.+.......... .. .+.....++. .....++...+
T Consensus 119 D~i~si~~~eh~~~~~~~~~f~~i~~~Lkp---gG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~lPS 195 (280)
T d2fk8a1 119 DRIVSIEAFEHFGHENYDDFFKRCFNIMPA---DGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPS 195 (280)
T ss_dssp SEEEEESCGGGTCGGGHHHHHHHHHHHSCT---TCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCC
T ss_pred hhhhHhhHHHHhhhhhHHHHHHHHHhccCC---CceEEEEEeeccCcchhhhcccccccccccccchhhhhccCCCcccc
Confidence 999999999999988777999999999999 999999876543321100 00 0001111111 12234556778
Q ss_pred HHHHHHHHHHcCCeEEEEeec
Q 030291 149 EQEWGSLFVNAGFTHYKIAPI 169 (180)
Q Consensus 149 ~~~~~~~l~~aGf~~~~~~~~ 169 (180)
.+++.+.++++||++.++.+.
T Consensus 196 ~~~l~~~~e~aGf~v~~~~~~ 216 (280)
T d2fk8a1 196 TEMMVEHGEKAGFTVPEPLSL 216 (280)
T ss_dssp HHHHHHHHHHTTCBCCCCEEC
T ss_pred hHhhhhhHHhhccccceeeec
Confidence 999999999999999887765
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.85 E-value=1.7e-21 Score=138.18 Aligned_cols=145 Identities=14% Similarity=0.160 Sum_probs=105.2
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC--CCCeeEEecCCccc--CCCccEEEeccccccCCh
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ--TDNLKYIEGDMFQF--IPPSDAFFFKTVFHFFDD 88 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~--~~~~~~~~~d~~~~--~~~~D~v~~~~~l~~~~~ 88 (180)
..+.+|||||||+|.++..+++.. .+++++|+++ +++.+++ ..++++.++++.+. ...||+|++..+++|+++
T Consensus 19 ~~~~~VLDiGcG~G~~~~~l~~~g--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~vleh~~d 96 (225)
T d2p7ia1 19 FRPGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDD 96 (225)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSS
T ss_pred CCCCcEEEEeCCCcHHHHHHHHcC--CeEEEEeCcHHHhhhhhcccccccccccccccccccccccccccccceeEecCC
Confidence 356789999999999999998874 5699999976 8888875 56799999988552 236999999999999999
Q ss_pred HHHHHHHHHHH-HhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccc-eee-----EeecCCcccCHHHHHHHHHHcCC
Q 030291 89 EDCLKLLKKCR-EAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFD-IFM-----NFNVGGKERTEQEWGSLFVNAGF 161 (180)
Q Consensus 89 ~~~~~~l~~~~-~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~l~~aGf 161 (180)
+. .+|.+++ ++|+| ||.+++..++....... ......... ... ....+.+.++.+++.++++++||
T Consensus 97 ~~--~~l~~i~~~~Lk~---gG~l~i~~pn~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf 169 (225)
T d2p7ia1 97 PV--ALLKRINDDWLAE---GGRLFLVCPNANAVSRQ--IAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGL 169 (225)
T ss_dssp HH--HHHHHHHHTTEEE---EEEEEEEEECTTCHHHH--HHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTC
T ss_pred HH--HHHHHHHHHhcCC---CceEEEEeCCcccHHHH--HHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCCC
Confidence 98 7799998 78999 88888876543221100 000000000 000 01123456789999999999999
Q ss_pred eEEEEe
Q 030291 162 THYKIA 167 (180)
Q Consensus 162 ~~~~~~ 167 (180)
++++..
T Consensus 170 ~i~~~~ 175 (225)
T d2p7ia1 170 QVTYRS 175 (225)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 988765
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.84 E-value=6.5e-21 Score=139.43 Aligned_cols=164 Identities=18% Similarity=0.224 Sum_probs=121.9
Q ss_pred cccccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccCCC
Q 030291 2 ATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFIPP 73 (180)
Q Consensus 2 ~~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~~~ 73 (180)
++.+++.+. ++++.+|||||||.|.++..+++.+ +++++++++|+ .++.+++ ..++++...|+....++
T Consensus 50 ~~~~~~~l~--l~~G~~VLDiGCG~G~~~~~~a~~~-g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~ 126 (291)
T d1kpia_ 50 RKLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEY-DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEP 126 (291)
T ss_dssp HHHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCC
T ss_pred HHHHHHhcC--CCCCCEEEEecCcchHHHHHHHHhc-CcceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccccccc
Confidence 345677888 9999999999999999999998887 68999999976 6666653 56788888888545567
Q ss_pred ccEEEeccccccCChH-------HHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhh-----hhhhhccce-eeEe
Q 030291 74 SDAFFFKTVFHFFDDE-------DCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDREL-----TESKLLFDI-FMNF 140 (180)
Q Consensus 74 ~D~v~~~~~l~~~~~~-------~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~ 140 (180)
||.|++..+++|+++. ....+++++.++||| ||.+++.....++....... .......++ ....
T Consensus 127 fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~Lkp---gG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyi 203 (291)
T d1kpia_ 127 VDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPD---DGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEI 203 (291)
T ss_dssp CSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCT---TCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHT
T ss_pred cceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCC---CCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHh
Confidence 9999999999999863 345899999999999 99999988775543211000 000000000 0112
Q ss_pred ecCCcccCHHHHHHHHHHcCCeEEEEeecCC
Q 030291 141 NVGGKERTEQEWGSLFVNAGFTHYKIAPIFG 171 (180)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~ 171 (180)
..++...+.+++...++++||++.+....+.
T Consensus 204 Fpgg~lps~~~~~~~~e~~gl~v~~~~~~~~ 234 (291)
T d1kpia_ 204 FPGGRLPRISQVDYYSSNAGWKVERYHRIGA 234 (291)
T ss_dssp CTTCCCCCHHHHHHHHHHHTCEEEEEEECGG
T ss_pred cCCCCCCCHHHHHhhhcccccccceeeeccc
Confidence 3455677899999999999999998877643
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.84 E-value=7.3e-21 Score=138.77 Aligned_cols=163 Identities=17% Similarity=0.173 Sum_probs=122.5
Q ss_pred cccccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccCCC
Q 030291 2 ATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFIPP 73 (180)
Q Consensus 2 ~~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~~~ 73 (180)
++.+++.+. ++++.+|||||||.|.++..+++.+ +++++++++|. .++.+++ ..++++...|+.+...+
T Consensus 51 ~~~~~~~l~--l~~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~ 127 (285)
T d1kpga_ 51 IDLALGKLG--LQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEP 127 (285)
T ss_dssp HHHHHTTTT--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCC
T ss_pred HHHHHHHcC--CCCCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccc
Confidence 356777888 8999999999999999999998887 79999999976 6666643 57899999999555557
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCch-----hhhhhhhccce-eeEeecCCccc
Q 030291 74 SDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDR-----ELTESKLLFDI-FMNFNVGGKER 147 (180)
Q Consensus 74 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~ 147 (180)
||.|++..+++|+.......+++++.++|+| ||.+++.+.....+.... .........++ ......++...
T Consensus 128 fD~i~si~~~eh~~~~~~~~~~~~~~r~Lkp---gG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lP 204 (285)
T d1kpga_ 128 VDRIVSIGAFEHFGHERYDAFFSLAHRLLPA---DGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLP 204 (285)
T ss_dssp CSEEEEESCGGGTCTTTHHHHHHHHHHHSCT---TCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCC
T ss_pred ccceeeehhhhhcCchhHHHHHHHHHhhcCC---CCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCC
Confidence 9999999999999877666899999999999 999999887643321100 00000000010 11123455667
Q ss_pred CHHHHHHHHHHcCCeEEEEeecC
Q 030291 148 TEQEWGSLFVNAGFTHYKIAPIF 170 (180)
Q Consensus 148 ~~~~~~~~l~~aGf~~~~~~~~~ 170 (180)
+.+++.+.++++||++.++.+.+
T Consensus 205 sl~~~~~~~e~agf~v~~~~~~~ 227 (285)
T d1kpga_ 205 SIPMVQECASANGFTVTRVQSLQ 227 (285)
T ss_dssp CHHHHHHHHHTTTCEEEEEEECH
T ss_pred ChhhHHHHHHHhchhhcccccch
Confidence 89999999999999999887663
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.83 E-value=2.8e-20 Score=133.62 Aligned_cols=103 Identities=24% Similarity=0.361 Sum_probs=84.1
Q ss_pred cccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCcc-cCC-CccEE
Q 030291 6 VKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQ-FIP-PSDAF 77 (180)
Q Consensus 6 ~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~-~~~-~~D~v 77 (180)
++... .++.++|||||||+|..+..+++. +.+++++|+|+ |++.|++ ..++++.++|+.+ +.+ .||+|
T Consensus 34 ~~~~~--~~~~~~iLDiGcGtG~~~~~l~~~--~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~fD~I 109 (251)
T d1wzna1 34 FKEDA--KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAV 109 (251)
T ss_dssp HHHTC--SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEE
T ss_pred HHHhc--CCCCCEEEEeCCCCCccchhhccc--ceEEEEEeeccccccccccccccccccchheehhhhhcccccccchH
Confidence 34444 567789999999999999999987 56799999976 9998875 4579999999965 333 59999
Q ss_pred Eec-cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 78 FFK-TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 78 ~~~-~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
++. .+++|+..++..++|++++++|+| ||.+++..
T Consensus 110 ~~~~~~~~~~~~~~~~~~L~~~~~~Lkp---gG~lii~~ 145 (251)
T d1wzna1 110 TMFFSTIMYFDEEDLRKLFSKVAEALKP---GGVFITDF 145 (251)
T ss_dssp EECSSGGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred hhhhhhhhcCChHHHHHHHHHHHHHcCC---CcEEEEEe
Confidence 986 578888777777999999999999 77776643
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.81 E-value=6.7e-20 Score=133.90 Aligned_cols=100 Identities=18% Similarity=0.316 Sum_probs=86.4
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCC-CCeEEEeeCch-hhccCCC-----CCCeeEEecCCcc-cC-CCccEEEecccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFP-GIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQ-FI-PPSDAFFFKTVF 83 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~-~~-~~~D~v~~~~~l 83 (180)
+..+.+|||||||+|.++..+++..+ +.+++++|+++ +++.+++ ..++++.++|+.+ +. .+||+|++..++
T Consensus 25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~~fD~v~~~~~l 104 (281)
T d2gh1a1 25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFL 104 (281)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCG
T ss_pred cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccccccCCceEEEEehhh
Confidence 67889999999999999999998875 57899999976 8888874 3478999999865 22 359999999999
Q ss_pred ccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 84 HFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
||++++. .+|+++.++||| ||.+++.++.
T Consensus 105 ~~~~d~~--~~l~~~~~~Lkp---gG~lii~~~~ 133 (281)
T d2gh1a1 105 LHMTTPE--TMLQKMIHSVKK---GGKIICFEPH 133 (281)
T ss_dssp GGCSSHH--HHHHHHHHTEEE---EEEEEEEECC
T ss_pred hcCCCHH--HHHHHHHHHcCc---CcEEEEEECC
Confidence 9999988 789999999999 9999998854
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.81 E-value=1.5e-19 Score=125.66 Aligned_cols=100 Identities=19% Similarity=0.263 Sum_probs=85.0
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcc--cCCCccEEEecccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ--FIPPSDAFFFKTVF 83 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~--~~~~~D~v~~~~~l 83 (180)
...+.+|||||||+|..+..+++. +.+++++|+++ +++.+++ ..++++...|+.+ +.+.||+|++..++
T Consensus 28 ~~~~grvLDiGcG~G~~~~~la~~--g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~I~~~~~~ 105 (198)
T d2i6ga1 28 VVAPGRTLDLGCGNGRNSLYLAAN--GYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVM 105 (198)
T ss_dssp TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEEEEEEESCG
T ss_pred cCCCCcEEEECCCCCHHHHHHHHH--hhhhccccCcHHHHHHHHHHhhhccccchhhhheecccccccccccEEEEeeee
Confidence 335669999999999999999998 66799999976 8887763 3678999999855 33469999999999
Q ss_pred ccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 84 HFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
||++++...++++++.++|+| ||.+++....
T Consensus 106 ~~~~~~~~~~~l~~~~~~L~p---gG~~~~~~~~ 136 (198)
T d2i6ga1 106 MFLEAQTIPGLIANMQRCTKP---GGYNLIVAAM 136 (198)
T ss_dssp GGSCTTHHHHHHHHHHHTEEE---EEEEEEEEEB
T ss_pred ecCCHHHHHHHHHHHHHHcCC---CcEEEEEEec
Confidence 999988888999999999999 8888887654
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.80 E-value=4.9e-19 Score=125.37 Aligned_cols=141 Identities=11% Similarity=0.052 Sum_probs=108.2
Q ss_pred cccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----CCCeeEEecCCcccC----CCccE
Q 030291 6 VKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----TDNLKYIEGDMFQFI----PPSDA 76 (180)
Q Consensus 6 ~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----~~~~~~~~~d~~~~~----~~~D~ 76 (180)
++.++ ++++.+|||||||+|..+..+++..|+..++++|+++ |++.++. ..++..+..|...+. ..+|+
T Consensus 67 l~~l~--ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v 144 (230)
T d1g8sa_ 67 LKVMP--IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKV 144 (230)
T ss_dssp CCCCC--CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCE
T ss_pred HHhCC--CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCccccccccee
Confidence 34566 8899999999999999999999998889999999965 7776653 678888888875532 24778
Q ss_pred EEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHH
Q 030291 77 FFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLF 156 (180)
Q Consensus 77 v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 156 (180)
+++...+++.++.. .+++++++.||| ||.++++.......... ......++..+.|
T Consensus 145 ~~i~~~~~~~~~~~--~~l~~~~r~LKp---gG~~~i~~k~~~~d~~~-------------------~~~~~~~e~~~~L 200 (230)
T d1g8sa_ 145 DVIYEDVAQPNQAE--ILIKNAKWFLKK---GGYGMIAIKARSIDVTK-------------------DPKEIFKEQKEIL 200 (230)
T ss_dssp EEEEECCCSTTHHH--HHHHHHHHHEEE---EEEEEEEEEGGGTCSSS-------------------CHHHHHHHHHHHH
T ss_pred EEeeccccchHHHH--HHHHHHHHhccc---CceEEEEeeccccCCCC-------------------CHHHHHHHHHHHH
Confidence 77777888887777 779999999999 89888877544322110 0111236778899
Q ss_pred HHcCCeEEEEeecCCc
Q 030291 157 VNAGFTHYKIAPIFGI 172 (180)
Q Consensus 157 ~~aGf~~~~~~~~~~~ 172 (180)
+++||++++..+..++
T Consensus 201 ~~aGF~ive~idL~py 216 (230)
T d1g8sa_ 201 EAGGFKIVDEVDIEPF 216 (230)
T ss_dssp HHHTEEEEEEEECTTT
T ss_pred HHcCCEEEEEecCCCC
Confidence 9999999999887554
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.79 E-value=1.6e-19 Score=127.44 Aligned_cols=100 Identities=17% Similarity=0.347 Sum_probs=84.9
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCcc-cC--CCccEEEecccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQ-FI--PPSDAFFFKTVF 83 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~-~~--~~~D~v~~~~~l 83 (180)
+++..+|||||||+|.++..+++. +.+++++|+|+ |++.|++ ..++.++++|+.+ +. .+||+|++..++
T Consensus 35 l~~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l 112 (226)
T d1ve3a1 35 MKKRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSI 112 (226)
T ss_dssp CCSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCG
T ss_pred cCCCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecch
Confidence 467789999999999999999886 67899999976 9988874 4567888888855 22 369999999999
Q ss_pred ccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 84 HFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
+|+++.+..++|+++.++||| ||.+++....
T Consensus 113 ~~~~~~d~~~~l~~i~~~Lkp---gG~lii~~~~ 143 (226)
T d1ve3a1 113 VHFEPLELNQVFKEVRRVLKP---SGKFIMYFTD 143 (226)
T ss_dssp GGCCHHHHHHHHHHHHHHEEE---EEEEEEEEEC
T ss_pred hhCChhHHHHHHHHHHHHcCc---CcEEEEEEcC
Confidence 999977777899999999999 8888887654
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.78 E-value=2.1e-19 Score=128.76 Aligned_cols=95 Identities=14% Similarity=0.160 Sum_probs=77.6
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCccc--CCCccEEEec-cccc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQF--IPPSDAFFFK-TVFH 84 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~~--~~~~D~v~~~-~~l~ 84 (180)
.++++|||||||+|..+..+++. +.+++|+|+|+ |++.|++ ..++++.++|+.+. ...||+|++. .+++
T Consensus 36 ~~~~~vLDiGCG~G~~~~~l~~~--g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~~~~ 113 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTN 113 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGG
T ss_pred CCCCeEEEEeCcCCHHHHHHHHh--CCccEeeccchhhhhhccccccccCccceeeccchhhhcccccccccceeeeeee
Confidence 44679999999999999999998 55799999977 9988864 45899999999652 2369999985 5788
Q ss_pred cCCh-HHHHHHHHHHHHhhccCCCCcEEEE
Q 030291 85 FFDD-EDCLKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 85 ~~~~-~~~~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
|+.+ .+...++++++++|+| ||.+++
T Consensus 114 ~~~~~~~~~~~l~~~~~~Lkp---gG~~i~ 140 (246)
T d1y8ca_ 114 YIIDSDDLKKYFKAVSNHLKE---GGVFIF 140 (246)
T ss_dssp GCCSHHHHHHHHHHHHTTEEE---EEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhCCC---CeEEEE
Confidence 8754 4566899999999999 776665
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.78 E-value=4.6e-19 Score=122.61 Aligned_cols=101 Identities=13% Similarity=0.116 Sum_probs=85.5
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------------------CCCeeEEecCCcccC--
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------------------TDNLKYIEGDMFQFI-- 71 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------------------~~~~~~~~~d~~~~~-- 71 (180)
++++.+|||+|||+|..+..|+++ +.+++++|+|+ |++.+++ ...+++.++|+.+..
T Consensus 18 ~~~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 95 (201)
T d1pjza_ 18 VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 95 (201)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred CCCCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccc
Confidence 678899999999999999999998 78899999977 9988874 244577888885532
Q ss_pred --CCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeee
Q 030291 72 --PPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVI 118 (180)
Q Consensus 72 --~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~ 118 (180)
..+|+|++..+++|+++.....+++++.++||| ||.+++.....
T Consensus 96 ~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~Lkp---gG~l~l~~~~~ 141 (201)
T d1pjza_ 96 DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQ---ACSGLLITLEY 141 (201)
T ss_dssp HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCS---EEEEEEEEESS
T ss_pred cccceeEEEEEeeeEecchhhhHHHHHHHHHhcCC---CcEEEEEEccc
Confidence 269999999999999998888999999999999 88888766544
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=4.8e-18 Score=120.46 Aligned_cols=131 Identities=9% Similarity=0.024 Sum_probs=101.6
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----------------------CCCeeEEecCCc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----------------------TDNLKYIEGDMF 68 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----------------------~~~~~~~~~d~~ 68 (180)
.+++.+|||+|||+|..+..|++. +.+++++|+|+ +++.+++ ..++++.++|+.
T Consensus 43 ~~~~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 120 (229)
T d2bzga1 43 GKSGLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF 120 (229)
T ss_dssp TCCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred CCCCCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence 567889999999999999999998 77899999977 8776532 357899999986
Q ss_pred cc----CCCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCC
Q 030291 69 QF----IPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGG 144 (180)
Q Consensus 69 ~~----~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (180)
+. ...||+|+...+++|++......+++++.++|+| ||.+++........... .+.
T Consensus 121 ~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~Lkp---gG~~~l~~~~~~~~~~~-----------------gpp 180 (229)
T d2bzga1 121 DLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGK---KFQYLLCVLSYDPTKHP-----------------GPP 180 (229)
T ss_dssp GGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEE---EEEEEEEEEECCTTTCC-----------------CSS
T ss_pred hccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCC---cceEEEEEcccCCCCCC-----------------CCC
Confidence 52 2369999999999999998888999999999999 88888876654332110 111
Q ss_pred cccCHHHHHHHHHHcCCeEEEE
Q 030291 145 KERTEQEWGSLFVNAGFTHYKI 166 (180)
Q Consensus 145 ~~~~~~~~~~~l~~aGf~~~~~ 166 (180)
...+.+++.++++. +|++..+
T Consensus 181 ~~~~~~el~~lf~~-~~~i~~l 201 (229)
T d2bzga1 181 FYVPHAEIERLFGK-ICNIRCL 201 (229)
T ss_dssp CCCCHHHHHHHHTT-TEEEEEE
T ss_pred CCCCHHHHHHHhcC-CCEEEEE
Confidence 34578889888854 6765433
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.73 E-value=1e-17 Score=120.31 Aligned_cols=100 Identities=14% Similarity=0.059 Sum_probs=80.9
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCccc----CCCccEEEec
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQF----IPPSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~----~~~~D~v~~~ 80 (180)
.+++.+|||||||+|..+..+++.. ..+++|+|+|+ |++.|++ ..++.+.++|+... ...||+|++.
T Consensus 22 ~~~~~~VLDlGCG~G~~~~~~~~~~-~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~ 100 (252)
T d1ri5a_ 22 TKRGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ 100 (252)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHHT-CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred CCCcCEEEEecccCcHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEc
Confidence 4678999999999999999998874 34799999977 9988863 34789999998542 2259999999
Q ss_pred cccccCCh--HHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 81 TVFHFFDD--EDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 81 ~~l~~~~~--~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
+++||+.+ .....+++++.++|+| ||.+++..+
T Consensus 101 ~~l~~~~~~~~~~~~~l~~i~~~Lk~---gG~~i~~~~ 135 (252)
T d1ri5a_ 101 FSFHYAFSTSESLDIAQRNIARHLRP---GGYFIMTVP 135 (252)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred ceeeecCCCHHHHHHHHHHHhceeCC---CCEEEEEec
Confidence 99999743 4456899999999999 888777544
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.73 E-value=1.9e-18 Score=123.34 Aligned_cols=97 Identities=16% Similarity=0.315 Sum_probs=79.4
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcc-cC--CCccEEEec-cccccCC
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQ-FI--PPSDAFFFK-TVFHFFD 87 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~-~~--~~~D~v~~~-~~l~~~~ 87 (180)
++++.+|||+|||+|.++..+++. +.+++|+|+++ |++.|++.....++.+|+.+ +. ..||+|++. .++||++
T Consensus 40 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~ 117 (246)
T d2avna1 40 LKNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVE 117 (246)
T ss_dssp CCSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCS
T ss_pred cCCCCEEEEECCCCchhccccccc--ceEEEEeecccccccccccccccccccccccccccccccccceeeecchhhhhh
Confidence 457789999999999999999876 67899999976 99998874434466777744 23 369999985 6899999
Q ss_pred hHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 88 DEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 88 ~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
|+. ++|+++.++||| ||.+++..+
T Consensus 118 d~~--~~l~~i~r~Lk~---gG~~ii~~~ 141 (246)
T d2avna1 118 NKD--KAFSEIRRVLVP---DGLLIATVD 141 (246)
T ss_dssp CHH--HHHHHHHHHEEE---EEEEEEEEE
T ss_pred hHH--HHHHHHHhhcCc---CcEEEEEEC
Confidence 988 789999999999 888877654
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.71 E-value=3.5e-17 Score=117.23 Aligned_cols=125 Identities=19% Similarity=0.224 Sum_probs=97.8
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCccc--CCCccEEEeccccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQF--IPPSDAFFFKTVFH 84 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~~--~~~~D~v~~~~~l~ 84 (180)
.+++++|||+|||+|.++..+++. +.+++++|+++ +++.+++ ..++++.++|..+. ..+||+|+++...+
T Consensus 118 ~~~g~~VLDiGcGsG~l~i~aa~~--g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~~~~fD~V~ani~~~ 195 (254)
T d2nxca1 118 LRPGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE 195 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH
T ss_pred cCccCEEEEcccchhHHHHHHHhc--CCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccccccccccchhhhccccc
Confidence 467899999999999999888776 57899999966 8988874 44677888887553 34799999875543
Q ss_pred cCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEE
Q 030291 85 FFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHY 164 (180)
Q Consensus 85 ~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 164 (180)
....+++.+.++||| ||.+++++... ...+++.+.++++||+++
T Consensus 196 -----~l~~l~~~~~~~Lkp---GG~lilSgil~----------------------------~~~~~v~~~~~~~Gf~~~ 239 (254)
T d2nxca1 196 -----LHAALAPRYREALVP---GGRALLTGILK----------------------------DRAPLVREAMAGAGFRPL 239 (254)
T ss_dssp -----HHHHHHHHHHHHEEE---EEEEEEEEEEG----------------------------GGHHHHHHHHHHTTCEEE
T ss_pred -----cHHHHHHHHHHhcCC---CcEEEEEecch----------------------------hhHHHHHHHHHHCCCEEE
Confidence 234778999999999 89998876421 124678889999999999
Q ss_pred EEeecCCceeE
Q 030291 165 KIAPIFGIKSL 175 (180)
Q Consensus 165 ~~~~~~~~~~~ 175 (180)
+......+.++
T Consensus 240 ~~~~~~~Wv~l 250 (254)
T d2nxca1 240 EEAAEGEWVLL 250 (254)
T ss_dssp EEEEETTEEEE
T ss_pred EEEEECCEEEE
Confidence 99888776543
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=2.3e-17 Score=120.18 Aligned_cols=143 Identities=16% Similarity=0.203 Sum_probs=95.1
Q ss_pred cCCCeEEEeCCcccHHHHHHHHH----CCC--CeEEEeeCch-hhccCCC-------CCCe--eEEecCCcc--------
Q 030291 14 QGLRSMVDVGGGTGAFARIISEA----FPG--IKCTVLDLPH-AVTDMPQ-------TDNL--KYIEGDMFQ-------- 69 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~----~~~--~~~~~~D~~~-~~~~a~~-------~~~~--~~~~~d~~~-------- 69 (180)
++..+|||||||+|.++..+++. +++ ..++++|+++ |++.+++ ..++ .+...++.+
T Consensus 39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (280)
T d1jqea_ 39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEK 118 (280)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhccc
Confidence 34458999999999988877554 444 3579999976 8887753 2333 344444311
Q ss_pred -cCCCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccC
Q 030291 70 -FIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERT 148 (180)
Q Consensus 70 -~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (180)
....||+|++.+++||++++. ++|+++.++|+| ||.+++........... .+....... ......+.++
T Consensus 119 ~~~~~fD~I~~~~~l~~~~d~~--~~l~~l~~~Lkp---gG~l~i~~~~~~~~~~~-l~~~~~~~~----~~~~~~~~~~ 188 (280)
T d1jqea_ 119 KELQKWDFIHMIQMLYYVKDIP--ATLKFFHSLLGT---NAKMLIIVVSGSSGWDK-LWKKYGSRF----PQDDLCQYIT 188 (280)
T ss_dssp SSCCCEEEEEEESCGGGCSCHH--HHHHHHHHTEEE---EEEEEEEEECTTSHHHH-HHHHHGGGS----CCCTTSCCCC
T ss_pred CCCCceeEEEEccceecCCCHH--HHHHHHHhhCCC---CCEEEEEEecCcchHHH-HHHHHHHhc----CCCcccccCC
Confidence 123699999999999999987 789999999999 88888876543221110 001111111 1112235678
Q ss_pred HHHHHHHHHHcCCeEEEE
Q 030291 149 EQEWGSLFVNAGFTHYKI 166 (180)
Q Consensus 149 ~~~~~~~l~~aGf~~~~~ 166 (180)
.+++.+.|++.||+.+..
T Consensus 189 ~~~~~~~L~~~G~~~~~~ 206 (280)
T d1jqea_ 189 SDDLTQMLDNLGLKYECY 206 (280)
T ss_dssp HHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHCCCceEEE
Confidence 899999999999985443
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=1.8e-18 Score=124.42 Aligned_cols=139 Identities=10% Similarity=0.086 Sum_probs=95.0
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCe--------------------------
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNL-------------------------- 60 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~-------------------------- 60 (180)
..++.+|||||||+|..+..++... ..+++++|+|+ +++.+++ ...+
T Consensus 49 ~~~g~~vLDlGcG~G~~~~~~~~~~-~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (257)
T d2a14a1 49 GLQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 127 (257)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCCEEEEECCCCCHhHHHHhccc-cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHH
Confidence 3567799999999999887666553 34799999977 8888763 1110
Q ss_pred -----eEEecCCcc-------cCCCccEEEeccccccCCh--HHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchh
Q 030291 61 -----KYIEGDMFQ-------FIPPSDAFFFKTVFHFFDD--EDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRE 126 (180)
Q Consensus 61 -----~~~~~d~~~-------~~~~~D~v~~~~~l~~~~~--~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~ 126 (180)
.....+... ..+.||+|++.+++||++. .....+++++.++||| ||.+++.+.......
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~Lkp---GG~li~~~~~~~~~~---- 200 (257)
T d2a14a1 128 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKP---GGHLVTTVTLRLPSY---- 200 (257)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEESSCCEE----
T ss_pred hhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCC---CcEEEEEEecccccc----
Confidence 011111111 1236999999999999963 3455889999999999 899888876432210
Q ss_pred hhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEEEEee
Q 030291 127 LTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAP 168 (180)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 168 (180)
..... ......++.+++.++|+++||+++++..
T Consensus 201 --------~~~~~-~~~~~~~~~~~~~~~l~~aGf~v~~~~~ 233 (257)
T d2a14a1 201 --------MVGKR-EFSCVALEKGEVEQAVLDAGFDIEQLLH 233 (257)
T ss_dssp --------EETTE-EEECCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred --------eeccc-cccccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 00000 1123457899999999999999888743
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.65 E-value=7.3e-16 Score=107.41 Aligned_cols=99 Identities=9% Similarity=0.086 Sum_probs=77.9
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----CCCeeEEecCCccc-C--CCccEE-Eecccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----TDNLKYIEGDMFQF-I--PPSDAF-FFKTVF 83 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----~~~~~~~~~d~~~~-~--~~~D~v-~~~~~l 83 (180)
++++.+|||+|||+|..+..+++..|..+++++|+++ |++.+++ ..++.++..|...+ . ..+|.+ ++...+
T Consensus 54 lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~~~ 133 (209)
T d1nt2a_ 54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDI 133 (209)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECC
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEecc
Confidence 7899999999999999999999998888999999966 8887764 67999999988542 1 123322 222345
Q ss_pred ccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 84 HFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
+|..+.. .+++++.++||| ||.+++...
T Consensus 134 ~~~~~~~--~~l~~~~~~Lkp---gG~l~i~~~ 161 (209)
T d1nt2a_ 134 AQKNQIE--ILKANAEFFLKE---KGEVVIMVK 161 (209)
T ss_dssp CSTTHHH--HHHHHHHHHEEE---EEEEEEEEE
T ss_pred cChhhHH--HHHHHHHHHhcc---CCeEEEEEE
Confidence 5666665 789999999999 899988764
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.64 E-value=2.2e-16 Score=114.25 Aligned_cols=93 Identities=15% Similarity=0.209 Sum_probs=79.4
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-CCCeeEEecCCcc-cC--CCccEEEeccccccCCh
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-TDNLKYIEGDMFQ-FI--PPSDAFFFKTVFHFFDD 88 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-~~~~~~~~~d~~~-~~--~~~D~v~~~~~l~~~~~ 88 (180)
.++.+|||||||+|.++..+++.+|+.+++++|+++ +++.+++ ..++++.++|..+ +. ..||+|++.+++++
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~--- 159 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK--- 159 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC---
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH---
Confidence 567899999999999999999999999999999976 8888876 6789999999955 32 36999999888765
Q ss_pred HHHHHHHHHHHHhhccCCCCcEEEEEEeee
Q 030291 89 EDCLKLLKKCREAIASNGERGKVLIIDIVI 118 (180)
Q Consensus 89 ~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~ 118 (180)
++++.++||| ||.+++..+..
T Consensus 160 ------~~e~~rvLkp---gG~l~~~~p~~ 180 (268)
T d1p91a_ 160 ------AEELARVVKP---GGWVITATPGP 180 (268)
T ss_dssp ------HHHHHHHEEE---EEEEEEEEECT
T ss_pred ------HHHHHHHhCC---CcEEEEEeeCC
Confidence 5678999999 89998887643
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.62 E-value=2.2e-15 Score=110.23 Aligned_cols=97 Identities=21% Similarity=0.234 Sum_probs=73.2
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----------CCCeeEEecCCcc-----c-CCCccE
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----------TDNLKYIEGDMFQ-----F-IPPSDA 76 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----------~~~~~~~~~d~~~-----~-~~~~D~ 76 (180)
.+..+|||+|||+|..+..|++. +.+++++|+|+ |++.|++ ..+..+...++.. + ...||.
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~ 132 (292)
T d1xvaa_ 55 HGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDA 132 (292)
T ss_dssp TTCCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEE
T ss_pred cCCCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceE
Confidence 45679999999999999999988 67899999976 9988864 1233444555532 1 236999
Q ss_pred EEec-cccccCCh-----HHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 77 FFFK-TVFHFFDD-----EDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 77 v~~~-~~l~~~~~-----~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
|++. .+++|+++ .+...+|++++++||| ||.+++..
T Consensus 133 v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~ 174 (292)
T d1xvaa_ 133 VICLGNSFAHLPDSKGDQSEHRLALKNIASMVRP---GGLLVIDH 174 (292)
T ss_dssp EEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred EEEecCchhhcCCcccChHHHHHHHHHHHHHcCc---CcEEEEee
Confidence 9975 47889865 3456899999999999 77766643
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=2.4e-16 Score=113.73 Aligned_cols=137 Identities=15% Similarity=0.182 Sum_probs=93.5
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCC----------------------------
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDN---------------------------- 59 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~---------------------------- 59 (180)
..+.++||||||+|.++...+... ..+++++|+++ |++.+++ ...
T Consensus 53 ~~g~~vLDiGcG~g~~~~~~~~~~-~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T d2g72a1 53 VSGRTLIDIGSGPTVYQLLSACSH-FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 131 (263)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGG-CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCCcEEEEeccCCCHHHHHHhccc-CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhh
Confidence 457899999999998765444333 34799999976 8887753 111
Q ss_pred ---eeEEecCCccc---------CCCccEEEeccccccCCh--HHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCch
Q 030291 60 ---LKYIEGDMFQF---------IPPSDAFFFKTVFHFFDD--EDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDR 125 (180)
Q Consensus 60 ---~~~~~~d~~~~---------~~~~D~v~~~~~l~~~~~--~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~ 125 (180)
......|+... .+.||+|++.+++||++. .....+++++.++||| ||.+++.+.......
T Consensus 132 ~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkP---GG~li~~~~~~~~~~--- 205 (263)
T d2g72a1 132 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRP---GGHLLLIGALEESWY--- 205 (263)
T ss_dssp HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEEESCCEE---
T ss_pred hhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCC---CCEEEEecccCCccc---
Confidence 12334455331 125999999999999962 3456889999999999 888888776432110
Q ss_pred hhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEEEEe
Q 030291 126 ELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIA 167 (180)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 167 (180)
.... .......++.+++.++++++||++++..
T Consensus 206 -------~~~~---~~~~~~~~t~e~v~~~l~~aGf~v~~~~ 237 (263)
T d2g72a1 206 -------LAGE---ARLTVVPVSEEEVREALVRSGYKVRDLR 237 (263)
T ss_dssp -------EETT---EEEECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred -------ccCC---cccccCCCCHHHHHHHHHHCCCeEEEEE
Confidence 0000 0011234699999999999999988764
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.60 E-value=2.2e-14 Score=100.83 Aligned_cols=146 Identities=15% Similarity=0.082 Sum_probs=100.3
Q ss_pred cccccccccCCCeEEEeCCcccHHHHHHHHH-CCCCeEEEeeCch-hhccCCC----CCCeeEEecCCccc------CCC
Q 030291 6 VKDCRPIFQGLRSMVDVGGGTGAFARIISEA-FPGIKCTVLDLPH-AVTDMPQ----TDNLKYIEGDMFQF------IPP 73 (180)
Q Consensus 6 ~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~-~~~~~~~~~D~~~-~~~~a~~----~~~~~~~~~d~~~~------~~~ 73 (180)
++.+. ++++.+|||+|||+|.++..+++. .|.-+++++|+++ ++..+++ ..++..+..|...+ .+.
T Consensus 66 l~~l~--i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~ 143 (227)
T d1g8aa_ 66 LKNFP--IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPK 143 (227)
T ss_dssp CCCCC--CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCC
T ss_pred ccccc--cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccc
Confidence 34555 889999999999999999999987 4778999999965 7776653 67788888877432 124
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHH
Q 030291 74 SDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWG 153 (180)
Q Consensus 74 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (180)
+|+|++ .+.+.++.. .+++++.+.||| ||.++++........... ...-..+..
T Consensus 144 vD~i~~--d~~~~~~~~--~~l~~~~~~Lkp---gG~lvi~~ka~~~~~~~~-------------------~~~v~~~v~ 197 (227)
T d1g8aa_ 144 VDVIFE--DVAQPTQAK--ILIDNAEVYLKR---GGYGMIAVKSRSIDVTKE-------------------PEQVFREVE 197 (227)
T ss_dssp EEEEEE--CCCSTTHHH--HHHHHHHHHEEE---EEEEEEEEEGGGTCTTSC-------------------HHHHHHHHH
T ss_pred eEEEEE--EccccchHH--HHHHHHHHhccc---CCeEEEEEECCccCCCCC-------------------HHHHHHHHH
Confidence 677665 344555555 779999999999 888888654322211000 000012232
Q ss_pred HHHHHcCCeEEEEeecCCc---eeEEEEeC
Q 030291 154 SLFVNAGFTHYKIAPIFGI---KSLIEVYP 180 (180)
Q Consensus 154 ~~l~~aGf~~~~~~~~~~~---~~~~~~~~ 180 (180)
.+.+.||++.+.....++ +.++.++|
T Consensus 198 -~l~~~gf~iie~i~L~p~~~~H~~vv~rK 226 (227)
T d1g8aa_ 198 -RELSEYFEVIERLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp -HHHHTTSEEEEEEECTTTSSSEEEEEEEC
T ss_pred -HHHHcCCEEEEEEcCCCCCCceEEEEEEe
Confidence 345679999999887664 66776664
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.59 E-value=1.1e-15 Score=105.47 Aligned_cols=102 Identities=12% Similarity=0.303 Sum_probs=81.3
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC--------CCCeeEEecCCcccCC--C
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ--------TDNLKYIEGDMFQFIP--P 73 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~--------~~~~~~~~~d~~~~~~--~ 73 (180)
+++.+. ..++.+|||+|||+|.++..+++..+ +++++|+++ +++.+++ ..++++..+|..+..+ .
T Consensus 44 Li~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~--~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~~ 119 (194)
T d1dusa_ 44 LVENVV--VDKDDDILDLGCGYGVIGIALADEVK--STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRK 119 (194)
T ss_dssp HHHHCC--CCTTCEEEEETCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSC
T ss_pred HHHhCC--cCCCCeEEEEeecCChhHHHHHhhcc--ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccCC
Confidence 455555 67889999999999999999988754 699999966 8887763 3568999999876443 6
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 74 SDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 74 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
||+|+++.++|+..+ ....+++++.++|+| ||.+++.
T Consensus 120 fD~Ii~~~p~~~~~~-~~~~~l~~~~~~Lkp---gG~l~i~ 156 (194)
T d1dusa_ 120 YNKIITNPPIRAGKE-VLHRIIEEGKELLKD---NGEIWVV 156 (194)
T ss_dssp EEEEEECCCSTTCHH-HHHHHHHHHHHHEEE---EEEEEEE
T ss_pred ceEEEEcccEEecch-hhhhHHHHHHHhcCc---CcEEEEE
Confidence 999999988766543 334789999999999 8887764
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.58 E-value=1.6e-15 Score=108.09 Aligned_cols=100 Identities=17% Similarity=0.185 Sum_probs=79.7
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHH-CCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccC--C
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEA-FPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFI--P 72 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~-~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~--~ 72 (180)
.|+...+ ++++++|||+|||+|.++..+++. .|..+++++|.++ +++.|++ ..++++..+|+.+.. .
T Consensus 76 ~Ii~~l~--i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~ 153 (250)
T d1yb2a1 76 YIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQ 153 (250)
T ss_dssp -----CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSC
T ss_pred HHHHHcC--CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccc
Confidence 4566677 899999999999999999999887 6788999999965 8887764 478999999997643 3
Q ss_pred CccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 73 PSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 73 ~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
.||.|++ +++++. .+++.+.++||| ||.+++..
T Consensus 154 ~fD~V~l-----d~p~p~--~~l~~~~~~LKp---GG~lv~~~ 186 (250)
T d1yb2a1 154 MYDAVIA-----DIPDPW--NHVQKIASMMKP---GSVATFYL 186 (250)
T ss_dssp CEEEEEE-----CCSCGG--GSHHHHHHTEEE---EEEEEEEE
T ss_pred eeeeeee-----cCCchH--HHHHHHHHhcCC---CceEEEEe
Confidence 5999986 456666 779999999999 88887754
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.55 E-value=2.2e-15 Score=103.28 Aligned_cols=99 Identities=19% Similarity=0.251 Sum_probs=80.3
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcc---cCCC
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQ---FIPP 73 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~---~~~~ 73 (180)
+++.+. ..++++|||||||+|.++..+++. ..+++++|.++ +++.+++ ..++++.++|+.+ ..+.
T Consensus 25 il~~l~--~~~g~~VLDiGcGsG~~s~~lA~~--~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~ 100 (186)
T d1l3ia_ 25 IMCLAE--PGKNDVAVDVGCGTGGVTLELAGR--VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPD 100 (186)
T ss_dssp HHHHHC--CCTTCEEEEESCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCC
T ss_pred HHHhcC--CCCCCEEEEEECCeEccccccccc--ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCC
Confidence 455556 788999999999999999998876 45899999965 8888875 3699999999865 3357
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 74 SDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 74 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
||.|++....++. . ++++.+.+.|+| ||++++..
T Consensus 101 ~D~v~~~~~~~~~---~--~~~~~~~~~Lkp---gG~lvi~~ 134 (186)
T d1l3ia_ 101 IDIAVVGGSGGEL---Q--EILRIIKDKLKP---GGRIIVTA 134 (186)
T ss_dssp EEEEEESCCTTCH---H--HHHHHHHHTEEE---EEEEEEEE
T ss_pred cCEEEEeCccccc---h--HHHHHHHHHhCc---CCEEEEEe
Confidence 9999998776543 2 679999999999 88887754
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=3.5e-16 Score=110.72 Aligned_cols=95 Identities=11% Similarity=0.045 Sum_probs=73.7
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCcc---cC--CCccEEE----
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQ---FI--PPSDAFF---- 78 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~---~~--~~~D~v~---- 78 (180)
..+.+|||||||+|..+..+++.. ..+++++|+++ +++.+++ ..++.+...+... .. .+||.|+
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~-~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~ 130 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 130 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSC-EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred cCCCeEEEeeccchHHHHHHHHcC-CCeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccc
Confidence 567899999999999999988765 45899999966 8888864 4566777776533 22 3588877
Q ss_pred -eccccccCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 79 -FKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 79 -~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
+...++|+.+.. .++++++++||| ||.+++.
T Consensus 131 ~~~~~~~~~~~~~--~~~~~~~r~Lkp---GG~~~~~ 162 (229)
T d1zx0a1 131 PLSEETWHTHQFN--FIKNHAFRLLKP---GGVLTYC 162 (229)
T ss_dssp CCBGGGTTTHHHH--HHHHTHHHHEEE---EEEEEEC
T ss_pred ccccccccccCHH--HHHHHHHHHcCC---CcEEEEE
Confidence 466777777776 789999999999 7777664
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.54 E-value=5.7e-15 Score=103.18 Aligned_cols=98 Identities=16% Similarity=0.250 Sum_probs=79.5
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHH-CCCCeEEEeeCch-hhccCCC------CCCeeEEecCCccc---CC
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEA-FPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQF---IP 72 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~-~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~---~~ 72 (180)
.+++.+. ++++.+|||||||+|..+..+++. .+..+++++|.++ +++.+++ ..++.+.++|..+. .+
T Consensus 66 ~~l~~l~--l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~ 143 (213)
T d1dl5a1 66 LFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS 143 (213)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHhhh--ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcccccc
Confidence 3556666 899999999999999999999886 4677999999955 8888875 57888999988652 23
Q ss_pred CccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 73 PSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 73 ~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
.||+|++..+++++++. +.+.||| ||.+++.
T Consensus 144 ~fD~I~~~~~~~~~p~~--------l~~~Lkp---GG~lv~p 174 (213)
T d1dl5a1 144 PYDVIFVTVGVDEVPET--------WFTQLKE---GGRVIVP 174 (213)
T ss_dssp CEEEEEECSBBSCCCHH--------HHHHEEE---EEEEEEE
T ss_pred chhhhhhhccHHHhHHH--------HHHhcCC---CcEEEEE
Confidence 69999999999988753 4577999 8888774
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.53 E-value=3.5e-14 Score=98.34 Aligned_cols=97 Identities=18% Similarity=0.224 Sum_probs=78.0
Q ss_pred CCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcc-----cCCCccEEEecccc
Q 030291 16 LRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ-----FIPPSDAFFFKTVF 83 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~-----~~~~~D~v~~~~~l 83 (180)
...|||||||+|.++..+++.+|+..++|+|++. ++..+.+ ..|+.++++|+.. +...+|.|++.+..
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~ 109 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSD 109 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCC
T ss_pred CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccccc
Confidence 4478999999999999999999999999999965 7777653 5789999999854 22369999987776
Q ss_pred ccCChHH------HHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 84 HFFDDED------CLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 84 ~~~~~~~------~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
.+..... ...+|+.+.++||| ||.+++..
T Consensus 110 P~~k~~h~k~Rl~~~~~l~~~~r~Lkp---gG~l~i~T 144 (204)
T d2fcaa1 110 PWPKKRHEKRRLTYSHFLKKYEEVMGK---GGSIHFKT 144 (204)
T ss_dssp CCCSGGGGGGSTTSHHHHHHHHHHHTT---SCEEEEEE
T ss_pred ccchhhhcchhhhHHHHHHHHHHhCCC---CcEEEEEE
Confidence 6554331 13789999999999 89888853
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.52 E-value=1e-14 Score=104.46 Aligned_cols=102 Identities=13% Similarity=0.166 Sum_probs=84.5
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHH-CCCCeEEEeeCch-hhccCCC---------CCCeeEEecCCcc-cC
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEA-FPGIKCTVLDLPH-AVTDMPQ---------TDNLKYIEGDMFQ-FI 71 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~-~~~~~~~~~D~~~-~~~~a~~---------~~~~~~~~~d~~~-~~ 71 (180)
.|+..++ ++++.+|||+|||+|.++..|+.. .|..+++++|.++ +++.|++ ..++.+.++|..+ ..
T Consensus 87 ~Ii~~l~--i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~ 164 (264)
T d1i9ga_ 87 QIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL 164 (264)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC
T ss_pred HHHHHhC--CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccc
Confidence 3455666 899999999999999999999887 6888999999955 8888864 4789999999965 23
Q ss_pred --CCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 72 --PPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 72 --~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
..||.|++ +++++. .+++.+.++||| ||.+++..+.
T Consensus 165 ~~~~fDaV~l-----dlp~P~--~~l~~~~~~Lkp---GG~lv~~~P~ 202 (264)
T d1i9ga_ 165 PDGSVDRAVL-----DMLAPW--EVLDAVSRLLVA---GGVLMVYVAT 202 (264)
T ss_dssp CTTCEEEEEE-----ESSCGG--GGHHHHHHHEEE---EEEEEEEESS
T ss_pred cCCCcceEEE-----ecCCHH--HHHHHHHhccCC---CCEEEEEeCc
Confidence 36999986 678888 779999999999 8888876543
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.52 E-value=1.9e-14 Score=103.56 Aligned_cols=100 Identities=17% Similarity=0.234 Sum_probs=81.5
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccCC--
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFIP-- 72 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~~-- 72 (180)
.|+..++ +.++.+|||+|||+|.++..+++.. |..+++++|.++ +++.|++ ..++.+...|+....+
T Consensus 94 ~Ii~~l~--i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~~ 171 (266)
T d1o54a_ 94 FIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEK 171 (266)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCC
T ss_pred HHHHhhC--CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccccccc
Confidence 3556666 8999999999999999999998874 788999999965 8888875 3678888888755333
Q ss_pred CccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 73 PSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 73 ~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
.+|.|+. +++++. .+++++.++||| ||.+++..
T Consensus 172 ~~D~V~~-----d~p~p~--~~l~~~~~~LKp---GG~lv~~~ 204 (266)
T d1o54a_ 172 DVDALFL-----DVPDPW--NYIDKCWEALKG---GGRFATVC 204 (266)
T ss_dssp SEEEEEE-----CCSCGG--GTHHHHHHHEEE---EEEEEEEE
T ss_pred ceeeeEe-----cCCCHH--HHHHHHHhhcCC---CCEEEEEe
Confidence 5888764 678887 779999999999 88888754
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.46 E-value=5e-13 Score=96.14 Aligned_cols=133 Identities=18% Similarity=0.239 Sum_probs=97.3
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcccCC--CccEEEeccc--
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQFIP--PSDAFFFKTV-- 82 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~~~--~~D~v~~~~~-- 82 (180)
+.+.+|||+|||+|..+..++...|+.+++++|+++ +++.|++ ..+++++++|.+++.+ .||+|+++=-
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPYi 186 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYI 186 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCB
T ss_pred ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccccCCCceeEEEecchhh
Confidence 556789999999999999999999999999999976 8888875 3579999999988654 6999999622
Q ss_pred -----------cccCCh----------HHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEee
Q 030291 83 -----------FHFFDD----------EDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFN 141 (180)
Q Consensus 83 -----------l~~~~~----------~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (180)
+.|-|. ....++++.+.+.|+| +|.+++ +...
T Consensus 187 ~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~---~G~l~l-Eig~----------------------- 239 (274)
T d2b3ta1 187 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVS---GGFLLL-EHGW----------------------- 239 (274)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEE---EEEEEE-ECCS-----------------------
T ss_pred hhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCC---CCEEEE-EECc-----------------------
Confidence 111111 2244688888999999 666655 3210
Q ss_pred cCCcccCHHHHHHHHHHcCCeEEEEeec-CCceeEEEE
Q 030291 142 VGGKERTEQEWGSLFVNAGFTHYKIAPI-FGIKSLIEV 178 (180)
Q Consensus 142 ~~~~~~~~~~~~~~l~~aGf~~~~~~~~-~~~~~~~~~ 178 (180)
...+.+.+++++.||..+++... .+...++.+
T Consensus 240 -----~q~~~v~~~l~~~gf~~i~~~kDl~g~~R~v~~ 272 (274)
T d2b3ta1 240 -----QQGEAVRQAFILAGYHDVETCRDYGDNERVTLG 272 (274)
T ss_dssp -----SCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEE
T ss_pred -----hHHHHHHHHHHHCCCCeEEEEECCCCCceEEEE
Confidence 12367788999999987765544 555555443
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=3e-14 Score=105.64 Aligned_cols=107 Identities=13% Similarity=0.189 Sum_probs=84.1
Q ss_pred ccccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC---------------CCCeeEEecC
Q 030291 3 TLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ---------------TDNLKYIEGD 66 (180)
Q Consensus 3 ~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~---------------~~~~~~~~~d 66 (180)
..+++.+. +++.++|||||||+|..+..+++.++..+++|+|+++ +++.|++ ..++++.++|
T Consensus 141 ~~~~~~~~--l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd 218 (328)
T d1nw3a_ 141 AQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 218 (328)
T ss_dssp HHHHHHSC--CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECC
T ss_pred HHHHHHcC--CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECc
Confidence 35667777 8899999999999999999999998777899999966 7766642 4689999999
Q ss_pred Cccc-C----CCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 67 MFQF-I----PPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 67 ~~~~-~----~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
+.+. . ..+|+|+++... |.++.. ..|.++.+.||| ||+++..+..
T Consensus 219 ~~~~~~~~~~~~advi~~~~~~-f~~~~~--~~l~e~~r~LKp---Gg~iv~~~~~ 268 (328)
T d1nw3a_ 219 FLSEEWRERIANTSVIFVNNFA-FGPEVD--HQLKERFANMKE---GGRIVSSKPF 268 (328)
T ss_dssp TTSHHHHHHHHHCSEEEECCTT-TCHHHH--HHHHHHHTTCCT---TCEEEESSCS
T ss_pred ccccccccccCcceEEEEccee-cchHHH--HHHHHHHHhCCC---CcEEEEeccc
Confidence 9652 1 136888876543 555555 779999999999 9998876544
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=6.3e-14 Score=98.46 Aligned_cols=99 Identities=15% Similarity=0.142 Sum_probs=77.7
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHH-CCCCeEEEeeCch-hhccCCC-----------CCCeeEEecCCccc-
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEA-FPGIKCTVLDLPH-AVTDMPQ-----------TDNLKYIEGDMFQF- 70 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~-~~~~~~~~~D~~~-~~~~a~~-----------~~~~~~~~~d~~~~- 70 (180)
+++.+...++++.+|||||||+|..+..+++. .+..+++++|..+ +++.+++ ..++.+..+|....
T Consensus 66 ~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~ 145 (224)
T d1i1na_ 66 ALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGY 145 (224)
T ss_dssp HHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCC
T ss_pred HHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeeccccc
Confidence 44444323688999999999999999988876 5677999999955 8877753 46789999998652
Q ss_pred --CCCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 71 --IPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 71 --~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
...||+|++...++++++. +.+.||| ||.+++.
T Consensus 146 ~~~~~fD~I~~~~~~~~ip~~--------l~~~Lkp---GG~LV~p 180 (224)
T d1i1na_ 146 AEEAPYDAIHVGAAAPVVPQA--------LIDQLKP---GGRLILP 180 (224)
T ss_dssp GGGCCEEEEEECSBBSSCCHH--------HHHTEEE---EEEEEEE
T ss_pred chhhhhhhhhhhcchhhcCHH--------HHhhcCC---CcEEEEE
Confidence 2369999999999987753 5678999 8888874
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.45 E-value=4.8e-13 Score=92.52 Aligned_cols=98 Identities=16% Similarity=0.261 Sum_probs=75.2
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcc---cC--CCccEEEeccc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ---FI--PPSDAFFFKTV 82 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~---~~--~~~D~v~~~~~ 82 (180)
....|||||||+|.++..+++.+|+..++|+|++. ++..+.+ ..|+.+..+|+.. .. .++|.|++.+.
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP 110 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 110 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccc
Confidence 34569999999999999999999999999999965 7776643 5789999999854 12 35898887554
Q ss_pred cccCChHH------HHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 83 FHFFDDED------CLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 83 l~~~~~~~------~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
--+..... ...+|+.+.++|+| ||.+.+..
T Consensus 111 dPw~K~~h~krRl~~~~~l~~~~~~Lkp---gG~l~i~T 146 (204)
T d1yzha1 111 DPWPKKRHEKRRLTYKTFLDTFKRILPE---NGEIHFKT 146 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCT---TCEEEEEE
T ss_pred ccccchhhhhhhhhHHHHHHHHHHhCCC---CcEEEEEE
Confidence 33222211 13789999999999 89988754
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.43 E-value=1.6e-13 Score=96.09 Aligned_cols=95 Identities=16% Similarity=0.208 Sum_probs=76.4
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----CCCeeEEecCCccc---CCCccE
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----TDNLKYIEGDMFQF---IPPSDA 76 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----~~~~~~~~~d~~~~---~~~~D~ 76 (180)
+++.+. ++++.+|||||||+|..+..+++. ..+++++|..+ ..+.+++ ..++++..+|.... ..+||.
T Consensus 62 ml~~L~--l~~g~~VLdIG~GsGy~ta~La~l--~~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD~ 137 (224)
T d1vbfa_ 62 MLDELD--LHKGQKVLEIGTGIGYYTALIAEI--VDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDR 137 (224)
T ss_dssp HHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEE
T ss_pred HHHHhh--hcccceEEEecCCCCHHHHHHHHH--hcccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHHH
Confidence 456667 899999999999999999988887 46799999954 7766653 67999999998552 236999
Q ss_pred EEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 77 FFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 77 v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
|++...++++++. +.+.|+| ||++++.
T Consensus 138 Iiv~~a~~~ip~~--------l~~qLk~---GGrLV~p 164 (224)
T d1vbfa_ 138 VVVWATAPTLLCK--------PYEQLKE---GGIMILP 164 (224)
T ss_dssp EEESSBBSSCCHH--------HHHTEEE---EEEEEEE
T ss_pred HHhhcchhhhhHH--------HHHhcCC---CCEEEEE
Confidence 9999999887754 4568999 8888773
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.38 E-value=2.2e-13 Score=102.83 Aligned_cols=108 Identities=14% Similarity=0.235 Sum_probs=80.1
Q ss_pred ccccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC---------------CCCeeE-Eec
Q 030291 3 TLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ---------------TDNLKY-IEG 65 (180)
Q Consensus 3 ~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~---------------~~~~~~-~~~ 65 (180)
..+++.+. +++++++||||||+|..+..++..++..+++|+|+++ +++.|++ ...+.+ ..+
T Consensus 206 ~~Il~~l~--Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~ 283 (406)
T d1u2za_ 206 SDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK 283 (406)
T ss_dssp HHHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred HHHHHHhC--CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeee
Confidence 45667777 8999999999999999999999998767899999976 8877753 223333 344
Q ss_pred CCcc------cCCCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeee
Q 030291 66 DMFQ------FIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVI 118 (180)
Q Consensus 66 d~~~------~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~ 118 (180)
++.. ....+|+|+++.. .|.++.. ..|.++.+.||| ||+++..+...
T Consensus 284 ~f~~~~~~d~~~~~adVV~inn~-~f~~~l~--~~L~ei~r~LKP---GGrIVs~~~~~ 336 (406)
T d1u2za_ 284 SFVDNNRVAELIPQCDVILVNNF-LFDEDLN--KKVEKILQTAKV---GCKIISLKSLR 336 (406)
T ss_dssp CSTTCHHHHHHGGGCSEEEECCT-TCCHHHH--HHHHHHHTTCCT---TCEEEESSCSS
T ss_pred chhhccccccccccceEEEEecc-cCchHHH--HHHHHHHHhcCC---CcEEEEecccC
Confidence 4433 1336888888654 3444444 779999999999 99998876543
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=3.8e-13 Score=99.01 Aligned_cols=101 Identities=13% Similarity=0.157 Sum_probs=80.0
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHH-CCCCeEEEeeCch-hhccCCC-----------------CCCeeEEe
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEA-FPGIKCTVLDLPH-AVTDMPQ-----------------TDNLKYIE 64 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~-~~~~~~~~~D~~~-~~~~a~~-----------------~~~~~~~~ 64 (180)
.|+..++ +.++.+|||+|||+|.++..|+.. .|+.+++++|.++ +++.|++ ..++++.+
T Consensus 89 ~Il~~l~--i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~ 166 (324)
T d2b25a1 89 MILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 166 (324)
T ss_dssp HHHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred HHHHHhC--CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEe
Confidence 3566667 899999999999999999999887 6788999999955 7777653 46899999
Q ss_pred cCCccc-----CCCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 65 GDMFQF-----IPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 65 ~d~~~~-----~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
.|+.+. ...||.|+. .++++. .++..+.++||| ||.+++..+
T Consensus 167 ~di~~~~~~~~~~~fD~V~L-----D~p~P~--~~l~~~~~~LKp---GG~lv~~~P 213 (324)
T d2b25a1 167 KDISGATEDIKSLTFDAVAL-----DMLNPH--VTLPVFYPHLKH---GGVCAVYVV 213 (324)
T ss_dssp SCTTCCC-------EEEEEE-----CSSSTT--TTHHHHGGGEEE---EEEEEEEES
T ss_pred cchhhcccccCCCCcceEee-----cCcCHH--HHHHHHHHhccC---CCEEEEEeC
Confidence 998542 125999886 456666 679999999999 888887654
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.33 E-value=1.9e-12 Score=95.33 Aligned_cols=96 Identities=16% Similarity=0.123 Sum_probs=73.6
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCC-------CCCeeEEecCCcc-cC--CCccEEEeccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ-------TDNLKYIEGDMFQ-FI--PPSDAFFFKTV 82 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~-------~~~~~~~~~d~~~-~~--~~~D~v~~~~~ 82 (180)
..++++|||||||+|.++..+++..+ .+++++|.+++...+++ ..++++.++|+.+ .. ..+|+|++..+
T Consensus 31 ~~~~~~VLDiGcG~G~ls~~aa~~Ga-~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~ 109 (316)
T d1oria_ 31 LFKDKVVLDVGSGTGILCMFAAKAGA-RKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWM 109 (316)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCC
T ss_pred cCCcCEEEEEecCCcHHHHHHHHhCC-CEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeee
Confidence 34678999999999999998888742 47999999764333332 5779999999966 22 36999999877
Q ss_pred cccCChH-HHHHHHHHHHHhhccCCCCcEEE
Q 030291 83 FHFFDDE-DCLKLLKKCREAIASNGERGKVL 112 (180)
Q Consensus 83 l~~~~~~-~~~~~l~~~~~~L~p~~~~G~~~ 112 (180)
.+++..+ ....++..+.+.|+| ||.++
T Consensus 110 ~~~l~~e~~~~~~l~~~~r~Lkp---~G~ii 137 (316)
T d1oria_ 110 GYCLFYESMLNTVLHARDKWLAP---DGLIF 137 (316)
T ss_dssp BBTBTBTCCHHHHHHHHHHHEEE---EEEEE
T ss_pred eeeeccHHHHHHHHHHHHhcCCC---CeEEE
Confidence 7766554 345789999999999 77765
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.33 E-value=2.1e-12 Score=95.65 Aligned_cols=95 Identities=16% Similarity=0.208 Sum_probs=72.9
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCC-------CCCeeEEecCCcc-cC--CCccEEEecccc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ-------TDNLKYIEGDMFQ-FI--PPSDAFFFKTVF 83 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~-------~~~~~~~~~d~~~-~~--~~~D~v~~~~~l 83 (180)
.++++|||||||+|.++..+++.. ..+++++|.++++..+++ ..+++++.+|+.+ .. +.+|+|++..+.
T Consensus 37 ~~~~~VLDlGcGtG~ls~~aa~~G-a~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~ 115 (328)
T d1g6q1_ 37 FKDKIVLDVGCGTGILSMFAAKHG-AKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG 115 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTC-CSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecc
Confidence 467899999999999998888874 347999999876555543 5789999999865 33 369999997777
Q ss_pred ccCChH-HHHHHHHHHHHhhccCCCCcEEE
Q 030291 84 HFFDDE-DCLKLLKKCREAIASNGERGKVL 112 (180)
Q Consensus 84 ~~~~~~-~~~~~l~~~~~~L~p~~~~G~~~ 112 (180)
+++... ....++..+.++||| ||.++
T Consensus 116 ~~~~~e~~~~~~~~a~~r~Lkp---gG~ii 142 (328)
T d1g6q1_ 116 YFLLYESMMDTVLYARDHYLVE---GGLIF 142 (328)
T ss_dssp TTBSTTCCHHHHHHHHHHHEEE---EEEEE
T ss_pred eeeccchhHHHHHHHHHhccCC---CeEEE
Confidence 666543 244778888999999 66554
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.29 E-value=1.5e-12 Score=90.56 Aligned_cols=97 Identities=20% Similarity=0.212 Sum_probs=77.7
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCccc---CCC
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQF---IPP 73 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~---~~~ 73 (180)
.+++.+. ++++.+|||||||+|+.+..+++.. +.+++++|..+ +.+.+++ ..|+.+.++|.... .+.
T Consensus 69 ~ml~~L~--l~~g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~p 145 (215)
T d1jg1a_ 69 IMLEIAN--LKPGMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAP 145 (215)
T ss_dssp HHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred HHHHhhc--cCccceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCc
Confidence 4566677 8899999999999999999888775 45699999954 7777764 58999999998662 346
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 74 SDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 74 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
||.|++...+.++++. +.+.|+| ||++++.
T Consensus 146 fD~Iiv~~a~~~ip~~--------l~~qL~~---gGrLv~p 175 (215)
T d1jg1a_ 146 YDVIIVTAGAPKIPEP--------LIEQLKI---GGKLIIP 175 (215)
T ss_dssp EEEEEECSBBSSCCHH--------HHHTEEE---EEEEEEE
T ss_pred ceeEEeecccccCCHH--------HHHhcCC---CCEEEEE
Confidence 9999999999888765 4567999 8877763
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=3.9e-12 Score=93.46 Aligned_cols=97 Identities=20% Similarity=0.192 Sum_probs=73.2
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCC-------CCCeeEEecCCcc-cC--CCccEEEeccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ-------TDNLKYIEGDMFQ-FI--PPSDAFFFKTV 82 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~-------~~~~~~~~~d~~~-~~--~~~D~v~~~~~ 82 (180)
..++++|||||||+|.++..+++..+ .+++++|.++....+++ ..++++.++|..+ .. ..+|+|++..+
T Consensus 33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga-~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~ 111 (311)
T d2fyta1 33 IFKDKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM 111 (311)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred cCCcCEEEEECCCCCHHHHHHHHcCC-CEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeee
Confidence 44678999999999999999888853 48999999773333321 5789999999865 22 36999999877
Q ss_pred cccCChHH-HHHHHHHHHHhhccCCCCcEEEE
Q 030291 83 FHFFDDED-CLKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 83 l~~~~~~~-~~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
.++...+. ...++....+.|+| ||.++-
T Consensus 112 ~~~~~~e~~~~~~~~a~~~~Lkp---~G~iip 140 (311)
T d2fyta1 112 GYFLLFESMLDSVLYAKNKYLAK---GGSVYP 140 (311)
T ss_dssp BTTBTTTCHHHHHHHHHHHHEEE---EEEEES
T ss_pred eeecccccccHHHHHHHHhcCCC---CcEEec
Confidence 77766543 44677778899999 777663
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.26 E-value=5.6e-12 Score=88.16 Aligned_cols=99 Identities=17% Similarity=0.194 Sum_probs=75.4
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHC------CCCeEEEeeCch-hhccCCC-----------CCCeeEEecC
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAF------PGIKCTVLDLPH-AVTDMPQ-----------TDNLKYIEGD 66 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~------~~~~~~~~D~~~-~~~~a~~-----------~~~~~~~~~d 66 (180)
+++.+...++++.+|||||||+|+.+..+++.. +..+++++|..+ +++.+++ ..++.+.++|
T Consensus 70 ~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d 149 (223)
T d1r18a_ 70 ALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGD 149 (223)
T ss_dssp HHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESC
T ss_pred HHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecc
Confidence 344442227789999999999999998887652 345899999954 7776653 3589999999
Q ss_pred Cccc---CCCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 67 MFQF---IPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 67 ~~~~---~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
..+. .+.||.|++...+.++++. +.+.|+| ||++++.
T Consensus 150 ~~~~~~~~~~fD~Iiv~~a~~~~p~~--------l~~~Lk~---gG~lV~p 189 (223)
T d1r18a_ 150 GRKGYPPNAPYNAIHVGAAAPDTPTE--------LINQLAS---GGRLIVP 189 (223)
T ss_dssp GGGCCGGGCSEEEEEECSCBSSCCHH--------HHHTEEE---EEEEEEE
T ss_pred cccccccccceeeEEEEeechhchHH--------HHHhcCC---CcEEEEE
Confidence 8652 3469999999999887753 5679999 8888764
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.24 E-value=8e-12 Score=85.64 Aligned_cols=97 Identities=15% Similarity=0.281 Sum_probs=70.6
Q ss_pred cCCCeEEEeCCcccHHHH----HHHHHC----CCCeEEEeeCch-hhccCCC----------------------------
Q 030291 14 QGLRSMVDVGGGTGAFAR----IISEAF----PGIKCTVLDLPH-AVTDMPQ---------------------------- 56 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~----~l~~~~----~~~~~~~~D~~~-~~~~a~~---------------------------- 56 (180)
.++-+|+++|||+|.-.. .+.+.. ...++++.|++. +++.|++
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 345699999999998433 233331 245799999966 8877752
Q ss_pred ---------CCCeeEEecCCccc----CCCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEE
Q 030291 57 ---------TDNLKYIEGDMFQF----IPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 57 ---------~~~~~~~~~d~~~~----~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
...+.+...+.... .+.||+|+|.++|.|++++.+.++++++.++|+| ||.+++
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~p---GG~L~l 169 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKP---DGLLFA 169 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEE---EEEEEE
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCC---CcEEEE
Confidence 12234444554332 2369999999999999999989999999999999 776666
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.17 E-value=1.5e-11 Score=83.95 Aligned_cols=113 Identities=17% Similarity=0.272 Sum_probs=86.4
Q ss_pred CcccccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCcc-----
Q 030291 1 MATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQ----- 69 (180)
Q Consensus 1 ~~~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~----- 69 (180)
|.+++++.+. ..++..++|++||+|..+..+++.+|+.+++++|..+ +++.+++ ..++.++++++.+
T Consensus 11 ll~evi~~l~--~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~ 88 (192)
T d1m6ya2 11 MVREVIEFLK--PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLL 88 (192)
T ss_dssp THHHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHH
T ss_pred HHHHHHHhhC--CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHH
Confidence 3456777777 7888999999999999999999999999999999954 8888864 5689999998844
Q ss_pred -c--CCCccEEEecccccc--CC-----hHHHHHHHHHHHHhhccCCCCcEEEEEEeee
Q 030291 70 -F--IPPSDAFFFKTVFHF--FD-----DEDCLKLLKKCREAIASNGERGKVLIIDIVI 118 (180)
Q Consensus 70 -~--~~~~D~v~~~~~l~~--~~-----~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~ 118 (180)
. ..++|.|+.-..+.. +. -......|..+.++|+| ||.+++..+..
T Consensus 89 ~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~---gG~l~ii~f~s 144 (192)
T d1m6ya2 89 KTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNP---GGRIVVISFHS 144 (192)
T ss_dssp HHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEE---EEEEEEEESSH
T ss_pred HHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCC---CCeeeeecccc
Confidence 1 246898886433211 10 11233779999999999 99998877554
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.13 E-value=6e-10 Score=79.45 Aligned_cols=120 Identities=12% Similarity=0.070 Sum_probs=87.2
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccCC--CccEEEeccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFIP--PSDAFFFKTV 82 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~~--~~D~v~~~~~ 82 (180)
.+++.+|||+|||+|.++..+++.. .++++++|+++ +++.+++ ..++++.++|..+..+ .+|.|+++..
T Consensus 105 ~~~g~~VlD~~aG~G~~~l~~a~~~-~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~p 183 (260)
T d2frna1 105 AKPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 183 (260)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred cCCccEEEECcceEcHHHHHHHHhC-CcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECCC
Confidence 4678999999999999999998874 56899999955 7777764 4679999999976433 5999987532
Q ss_pred cccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCe
Q 030291 83 FHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFT 162 (180)
Q Consensus 83 l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 162 (180)
+... .++..+.+.|++ ||.+.+.+....... .....+.+....+..|++
T Consensus 184 ----~~~~--~~l~~a~~~l~~---gG~lh~~~~~~~~~~----------------------~~~~~e~~~~~~~~~g~~ 232 (260)
T d2frna1 184 ----VRTH--EFIPKALSIAKD---GAIIHYHNTVPEKLM----------------------PREPFETFKRITKEYGYD 232 (260)
T ss_dssp ----SSGG--GGHHHHHHHEEE---EEEEEEEEEEEGGGT----------------------TTTTHHHHHHHHHHTTCE
T ss_pred ----CchH--HHHHHHHhhcCC---CCEEEEEeccccccc----------------------hhhHHHHHHHHHHHcCCc
Confidence 2223 678889999999 787766554322110 112346677788889997
Q ss_pred EE
Q 030291 163 HY 164 (180)
Q Consensus 163 ~~ 164 (180)
+.
T Consensus 233 v~ 234 (260)
T d2frna1 233 VE 234 (260)
T ss_dssp EE
T ss_pred eE
Confidence 64
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.97 E-value=3.4e-10 Score=77.29 Aligned_cols=67 Identities=19% Similarity=0.277 Sum_probs=54.3
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-CCCeeEEecCCcccCCCccEEEeccc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-TDNLKYIEGDMFQFIPPSDAFFFKTV 82 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-~~~~~~~~~d~~~~~~~~D~v~~~~~ 82 (180)
.+++|||+|||+|.++..++... ..+++++|+++ +++.+++ ..++++.++|+.+..+.||+|+++=-
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~g-a~~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l~~~fD~Vi~NPP 116 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLLG-AESVTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYDTWIMNPP 116 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTT-BSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCCCCEEEEEECCC
T ss_pred CCCEEEEeCCCCcHHHHHHHHcC-CCcccccccCHHHHHHHHHccccccEEEEehhhcCCcceEEEeCcc
Confidence 36899999999999998777764 34799999965 8887776 67899999999665567999999633
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=1.1e-08 Score=72.36 Aligned_cols=72 Identities=14% Similarity=0.181 Sum_probs=56.7
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCccc---------CCCccE
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQF---------IPPSDA 76 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~---------~~~~D~ 76 (180)
....++||||||+|..+..++...|+.+++++|+++ +++.|++ ..++.+...+..+. ...||+
T Consensus 60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 139 (250)
T d2h00a1 60 STLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 139 (250)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred cccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeE
Confidence 445689999999999999999999999999999966 8888875 56788877655331 125999
Q ss_pred EEecccccc
Q 030291 77 FFFKTVFHF 85 (180)
Q Consensus 77 v~~~~~l~~ 85 (180)
|+|+=-.+.
T Consensus 140 ivsNPPY~~ 148 (250)
T d2h00a1 140 CMCNPPFFA 148 (250)
T ss_dssp EEECCCCC-
T ss_pred EEecCcccc
Confidence 999876553
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.86 E-value=2.8e-09 Score=78.38 Aligned_cols=100 Identities=17% Similarity=0.123 Sum_probs=73.3
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCccc-------CCCccEE
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQF-------IPPSDAF 77 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~-------~~~~D~v 77 (180)
.+++.+|||++||+|.++..++... ..+++++|+++ +++.+++ ..++++.++|+.+. ...||+|
T Consensus 143 ~~~g~~VLDl~~g~G~~si~~a~~g-a~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~V 221 (324)
T d2as0a2 143 VQPGDRVLDVFTYTGGFAIHAAIAG-ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIV 221 (324)
T ss_dssp CCTTCEEEETTCTTTHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCCeeecccCcccchhhhhhhcC-CcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCch
Confidence 4678999999999999999988774 34899999976 8888864 35789999998652 2369999
Q ss_pred EeccccccCCh-------HHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 78 FFKTVFHFFDD-------EDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 78 ~~~~~l~~~~~-------~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
++.-....-.. .....++..+.++|+| ||.++.+..
T Consensus 222 i~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~p---GG~lv~~s~ 264 (324)
T d2as0a2 222 VLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKD---GGILVTCSC 264 (324)
T ss_dssp EECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEE---EEEEEEEEC
T ss_pred hcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCC---CcEEEEEeC
Confidence 98432111111 1223578888999999 777777653
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.85 E-value=4.9e-09 Score=76.05 Aligned_cols=98 Identities=17% Similarity=0.231 Sum_probs=72.5
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC--------CCCeeEEecCCccc-------CCCccEE
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ--------TDNLKYIEGDMFQF-------IPPSDAF 77 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~--------~~~~~~~~~d~~~~-------~~~~D~v 77 (180)
..+.+|||+.||+|.++..++.. +++++++|.++ +++.+++ ..+++++++|+++. ...||+|
T Consensus 131 ~~~~rVLdlf~~tG~~sl~aa~~--GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~I 208 (309)
T d2igta1 131 DRPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII 208 (309)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred cCCCeEEEecCCCcHHHHHHHhC--CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEE
Confidence 45779999999999999988876 67899999977 8888874 34799999999653 2369999
Q ss_pred Eec---cc------cccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 78 FFK---TV------FHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 78 ~~~---~~------l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
++. +. ...+ ......++..+.++|+| ||.+++....
T Consensus 209 ilDPP~f~~~~~~~~~~~-~~~~~~l~~~~~~ll~~---~g~~ll~t~~ 253 (309)
T d2igta1 209 LTDPPKFGRGTHGEVWQL-FDHLPLMLDICREILSP---KALGLVLTAY 253 (309)
T ss_dssp EECCCSEEECTTCCEEEH-HHHHHHHHHHHHHTBCT---TCCEEEEEEC
T ss_pred EECCCcccccccchhHHH-HHHHHHHHHHHHHhcCC---CCCEEEEecC
Confidence 972 11 1111 12234567888899999 7877776543
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.83 E-value=2.8e-09 Score=78.16 Aligned_cols=97 Identities=12% Similarity=0.066 Sum_probs=71.8
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCccc-------CCCccEEEec
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQF-------IPPSDAFFFK 80 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~-------~~~~D~v~~~ 80 (180)
.+.+|||++||+|.++..++.. ..+++++|.++ +++.+++ ..+++++++|..+. ...||+|++.
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~D 222 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 222 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEc
Confidence 5789999999999999988765 56899999976 8888874 46789999998652 2369999984
Q ss_pred ccc-ccCC------hHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 81 TVF-HFFD------DEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 81 ~~l-~~~~------~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
--- ..-. .....+++..+.++|+| ||.++.+..
T Consensus 223 pP~~~~~~~~~~~~~~~~~~l~~~a~~lLkp---GG~Lv~~sc 262 (318)
T d1wxxa2 223 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKE---GGILATASC 262 (318)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEE---EEEEEEEEC
T ss_pred CCccccchHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEeC
Confidence 211 1111 11233678899999999 787777554
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.82 E-value=3.4e-09 Score=74.75 Aligned_cols=84 Identities=12% Similarity=0.249 Sum_probs=63.2
Q ss_pred cccccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----CCCeeEEecCCcc-cCC--C
Q 030291 2 ATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----TDNLKYIEGDMFQ-FIP--P 73 (180)
Q Consensus 2 ~~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----~~~~~~~~~d~~~-~~~--~ 73 (180)
++.+++... +.+.++|||||||+|.+|..|++. ..+++++|+.. +.+.+++ ..+++++++|+++ +.+ .
T Consensus 18 i~kIv~~~~--~~~~d~VLEIGpG~G~LT~~L~~~--~~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~~ 93 (245)
T d1yuba_ 18 LNQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKI--SKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQ 93 (245)
T ss_dssp HHHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHH--SSEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSS
T ss_pred HHHHHHhcC--CCCCCeEEEECCCccHHHHHHHhh--cCceeEeeecccchhhhhhhhhhccchhhhhhhhhccccccce
Confidence 455666666 788999999999999999999998 55799999965 7777764 4789999999976 333 2
Q ss_pred ccEEEeccccccCChHH
Q 030291 74 SDAFFFKTVFHFFDDED 90 (180)
Q Consensus 74 ~D~v~~~~~l~~~~~~~ 90 (180)
.+.|+ +..-+|+..+-
T Consensus 94 ~~~vv-~NLPY~Ist~i 109 (245)
T d1yuba_ 94 RYKIV-GNIPYHLSTQI 109 (245)
T ss_dssp EEEEE-EECCSSSCHHH
T ss_pred eeeEe-eeeehhhhHHH
Confidence 44444 44445676654
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.81 E-value=8.8e-09 Score=70.57 Aligned_cols=69 Identities=19% Similarity=0.250 Sum_probs=54.4
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCcccCCCccEEEeccccc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQFIPPSDAFFFKTVFH 84 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~~~~~~D~v~~~~~l~ 84 (180)
.+.+|||+|||+|.++..++... ..+++++|+++ +++.+++ ..+.++...|.......||+|+++=-..
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~g-~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~~~~fD~Vi~nPP~~ 120 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFG 120 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCS
T ss_pred CCCEEEECcCcchHHHHHHHHcC-CCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhhCCcCcEEEEcCccc
Confidence 46799999999999998877664 35899999965 7777764 5678899999866656799999965543
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.80 E-value=5.6e-09 Score=68.45 Aligned_cols=92 Identities=10% Similarity=0.108 Sum_probs=64.9
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCccc----CCCccEEEeccc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQF----IPPSDAFFFKTV 82 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~----~~~~D~v~~~~~ 82 (180)
.+.+|||+|||+|.++...+.+.. .+++++|.+. +++.+++ ..+++++++|.... ...||+|++.=.
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga-~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP 92 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGM-SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP 92 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred CCCeEEEcCCccCHHHHHHHHhCc-ceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechh
Confidence 478999999999999998888753 3899999954 6665553 46799999998552 346999998422
Q ss_pred cccCChHHHHHHHHHHH--HhhccCCCCcEEEE
Q 030291 83 FHFFDDEDCLKLLKKCR--EAIASNGERGKVLI 113 (180)
Q Consensus 83 l~~~~~~~~~~~l~~~~--~~L~p~~~~G~~~~ 113 (180)
.. .......+..+. +.|+| +|.+++
T Consensus 93 y~---~~~~~~~l~~i~~~~~L~~---~g~iii 119 (152)
T d2esra1 93 YA---KETIVATIEALAAKNLLSE---QVMVVC 119 (152)
T ss_dssp SH---HHHHHHHHHHHHHTTCEEE---EEEEEE
T ss_pred hc---cchHHHHHHHHHHCCCcCC---CeEEEE
Confidence 11 222335666665 46899 555554
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=7.5e-09 Score=71.79 Aligned_cols=95 Identities=13% Similarity=0.164 Sum_probs=71.5
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCC-CCeEEEeeCch-hhccCCC-------CCCeeEEecCCccc---------CCCc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFP-GIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQF---------IPPS 74 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~---------~~~~ 74 (180)
..++++||||||++|..+..+++..+ +.+++.+|.++ ..+.+++ ..++++..+|..+. ...|
T Consensus 57 ~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~f 136 (219)
T d2avda1 57 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 136 (219)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred ccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCc
Confidence 45789999999999999999998865 78999999954 6666653 57899999998541 2369
Q ss_pred cEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 75 DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 75 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
|+|+...-= ......++.+.+.|+| ||.+++-+
T Consensus 137 D~ifiD~dk-----~~y~~~~~~~~~lL~~---GGvii~Dn 169 (219)
T d2avda1 137 DVAVVDADK-----ENCSAYYERCLQLLRP---GGILAVLR 169 (219)
T ss_dssp EEEEECSCS-----TTHHHHHHHHHHHEEE---EEEEEEEC
T ss_pred cEEEEeCCH-----HHHHHHHHHHHHHhcC---CcEEEEeC
Confidence 999985432 1223678889999999 55555433
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.80 E-value=1.1e-09 Score=75.92 Aligned_cols=96 Identities=18% Similarity=0.223 Sum_probs=69.1
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccC---------CCcc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFI---------PPSD 75 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~---------~~~D 75 (180)
.++++|||||||+|..+..+++.. ++.+++++|.++ +.+.+++ ..+++++.+|..+.+ ..||
T Consensus 55 ~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D 134 (214)
T d2cl5a1 55 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 134 (214)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEE
T ss_pred hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccc
Confidence 467899999999999999999876 468999999954 7777764 467999999986522 3599
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 76 AFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 76 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
+|+.-+.-... ... ..+.+..+.|+| || ++++|-
T Consensus 135 ~ifiD~~~~~~-~~~--~~l~~~~~lLkp---GG-vIv~Dd 168 (214)
T d2cl5a1 135 MVFLDHWKDRY-LPD--TLLLEKCGLLRK---GT-VLLADN 168 (214)
T ss_dssp EEEECSCGGGH-HHH--HHHHHHTTCEEE---EE-EEEESC
T ss_pred eeeeccccccc-ccH--HHHHHHhCccCC---Cc-EEEEeC
Confidence 99985331111 111 346777789999 55 555543
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.74 E-value=2.5e-08 Score=71.66 Aligned_cols=98 Identities=14% Similarity=0.170 Sum_probs=72.1
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCc-hhhccCCC----------CCCeeEEecCCccc----CCCccEE
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLP-HAVTDMPQ----------TDNLKYIEGDMFQF----IPPSDAF 77 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~-~~~~~a~~----------~~~~~~~~~d~~~~----~~~~D~v 77 (180)
.+.+++||-||.|.|..++.+++..+..+++.+|+. ++++.+++ .+|++++.+|.... ...||+|
T Consensus 76 ~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (285)
T d2o07a1 76 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI 155 (285)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred CcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEE
Confidence 367899999999999999999988778899999994 47777764 58999999998652 2369999
Q ss_pred Eeccc--cccCChHHHHHHHHHHHHhhccCCCCcEEEE
Q 030291 78 FFKTV--FHFFDDEDCLKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 78 ~~~~~--l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
++-.. ..-.......++++.+++.|+| +|.+++
T Consensus 156 i~D~~~p~~~~~~L~t~eF~~~~~~~L~~---~Gi~v~ 190 (285)
T d2o07a1 156 ITDSSDPMGPAESLFKESYYQLMKTALKE---DGVLCC 190 (285)
T ss_dssp EEECC-----------CHHHHHHHHHEEE---EEEEEE
T ss_pred EEcCCCCCCcccccccHHHHHHHHHhcCC---CCeEEE
Confidence 97432 1111111233789999999999 565554
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.74 E-value=7.3e-09 Score=75.53 Aligned_cols=98 Identities=13% Similarity=0.096 Sum_probs=73.2
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----------CCCeeEEecCCccc----CCCccEE
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----------TDNLKYIEGDMFQF----IPPSDAF 77 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----------~~~~~~~~~d~~~~----~~~~D~v 77 (180)
+.+++||.||+|.|..+..+++..+..+++.+|+.+ +++.+++ .++++++.+|..+. ...||+|
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence 578899999999999999999888888999999954 7776653 57899999999662 3369999
Q ss_pred Eeccc--cccC-C--hHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 78 FFKTV--FHFF-D--DEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 78 ~~~~~--l~~~-~--~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
++-.. ...- + .....++++.+++.|+| ||.+++.
T Consensus 156 i~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p---~Gvlv~~ 194 (312)
T d1uira_ 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNP---GGVMGMQ 194 (312)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEE---EEEEEEE
T ss_pred EEeCCCcccccchhhhhhhHHHHHHHHHhcCC---CceEEEe
Confidence 96332 1100 1 11124789999999999 6665553
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.69 E-value=1.1e-08 Score=71.65 Aligned_cols=63 Identities=17% Similarity=0.394 Sum_probs=51.9
Q ss_pred ccccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCC----CCCCeeEEecCCcc
Q 030291 3 TLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMP----QTDNLKYIEGDMFQ 69 (180)
Q Consensus 3 ~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~----~~~~~~~~~~d~~~ 69 (180)
+.+++... +.+.++|||||||+|.+|..+++. ..+++++|+.+ +.+..+ ..++++++++|+++
T Consensus 11 ~~iv~~~~--~~~~d~VlEIGpG~G~LT~~Ll~~--~~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~ 78 (235)
T d1qama_ 11 DKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQR--CNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQ 78 (235)
T ss_dssp HHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGG
T ss_pred HHHHHhcC--CCCCCeEEEECCCchHHHHHHHhC--cCceEEEeeccchHHHHHHHhhcccchhhhhhhhhh
Confidence 45666666 789999999999999999999998 56799999955 555544 36899999999987
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.66 E-value=2.1e-08 Score=73.22 Aligned_cols=100 Identities=16% Similarity=0.173 Sum_probs=70.7
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC--------CCCeeEEecCCccc-------CCCccE
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ--------TDNLKYIEGDMFQF-------IPPSDA 76 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~--------~~~~~~~~~d~~~~-------~~~~D~ 76 (180)
..++.+|||+.||+|.++..++... -.+++++|+++ +++.+++ ..+++++++|+++. ...||+
T Consensus 142 ~~~g~~VLdlf~~~G~~sl~aa~~g-a~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~ 220 (317)
T d2b78a2 142 SAAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDI 220 (317)
T ss_dssp TTBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred hhCCCceeecCCCCcHHHHHHHhCC-CceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCE
Confidence 3467899999999999998776653 33799999966 7777763 35789999999652 226999
Q ss_pred EEeccc-c----ccCCh--HHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 77 FFFKTV-F----HFFDD--EDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 77 v~~~~~-l----~~~~~--~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
|++.=- + ..... ....++++.+.++|+| ||.++++..
T Consensus 221 Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~p---gG~l~~~sc 264 (317)
T d2b78a2 221 IIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSE---NGLIIASTN 264 (317)
T ss_dssp EEECCCCC-----CCCCHHHHHHHHHHHHHHTEEE---EEEEEEEEC
T ss_pred EEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEeC
Confidence 997310 0 01111 1234789999999999 777776543
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.64 E-value=1.4e-08 Score=67.75 Aligned_cols=92 Identities=13% Similarity=0.169 Sum_probs=58.3
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcc-----cCCCccEEEe
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQ-----FIPPSDAFFF 79 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~-----~~~~~D~v~~ 79 (180)
+..+.+|||+|||+|.++...+.. +++++++|.++ +++.+++ ..++....+|... ....||+|++
T Consensus 39 ~~~g~~vLDl~~G~G~~~i~a~~~--ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~ 116 (171)
T d1ws6a1 39 YPRRGRFLDPFAGSGAVGLEAASE--GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFM 116 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHT--TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEE
T ss_pred ccCCCeEEEeccccchhhhhhhhc--cchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEE
Confidence 467889999999999999988777 66899999965 7777764 2334333343321 1236999998
Q ss_pred ccccccCChHHHHHHHHHHH--HhhccCCCCcEEEE
Q 030291 80 KTVFHFFDDEDCLKLLKKCR--EAIASNGERGKVLI 113 (180)
Q Consensus 80 ~~~l~~~~~~~~~~~l~~~~--~~L~p~~~~G~~~~ 113 (180)
.=-.+ .... +.+..+. .+|+| ||.+++
T Consensus 117 DPPY~-~~~~---~~l~~l~~~~ll~~---~g~ivi 145 (171)
T d1ws6a1 117 APPYA-MDLA---ALFGELLASGLVEA---GGLYVL 145 (171)
T ss_dssp CCCTT-SCTT---HHHHHHHHHTCEEE---EEEEEE
T ss_pred ccccc-cCHH---HHHHHHHHcCCcCC---CeEEEE
Confidence 42221 1211 2233332 57898 565544
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.63 E-value=1.8e-08 Score=72.75 Aligned_cols=97 Identities=10% Similarity=0.126 Sum_probs=72.1
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----------CCCeeEEecCCccc----CCCccEEE
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----------TDNLKYIEGDMFQF----IPPSDAFF 78 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----------~~~~~~~~~d~~~~----~~~~D~v~ 78 (180)
+.+++||-||+|.|..++.+++..+..+++.+|+.+ +++.+++ .+|+++..+|.... ...||+|+
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 167 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 167 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence 568999999999999999999887788999999954 7777764 57999999999662 23699999
Q ss_pred ecccccc-CCh--HHHHHHHHHHHHhhccCCCCcEEEE
Q 030291 79 FKTVFHF-FDD--EDCLKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 79 ~~~~l~~-~~~--~~~~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
+-..-.. .+. ....++++.+++.|+| +|.++.
T Consensus 168 ~D~~dp~~~~~~~L~t~efy~~~~~~L~~---~Gi~v~ 202 (295)
T d1inla_ 168 IDSTDPTAGQGGHLFTEEFYQACYDALKE---DGVFSA 202 (295)
T ss_dssp EEC----------CCSHHHHHHHHHHEEE---EEEEEE
T ss_pred EcCCCCCcCchhhhccHHHHHHHHhhcCC---CcEEEE
Confidence 7432111 111 1123899999999999 665554
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.62 E-value=1.4e-08 Score=72.45 Aligned_cols=66 Identities=18% Similarity=0.372 Sum_probs=53.8
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccC----CCccEEEec
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFI----PPSDAFFFK 80 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~----~~~D~v~~~ 80 (180)
.+..+++|+|||+|..+..+++ .|+++++++|+++ +++.|++ ..++.+..+|..+.. ..||+|+++
T Consensus 109 ~~~~~vld~g~GsG~i~~~la~-~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsN 186 (271)
T d1nv8a_ 109 YGIKTVADIGTGSGAIGVSVAK-FSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSN 186 (271)
T ss_dssp HTCCEEEEESCTTSHHHHHHHH-HSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEEC
T ss_pred ccccEEEEeeeeeehhhhhhhh-cccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEc
Confidence 4567899999999999998875 5799999999966 8888874 457888889887643 469999996
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.61 E-value=5.5e-08 Score=67.64 Aligned_cols=95 Identities=15% Similarity=0.154 Sum_probs=71.8
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCC-CCeEEEeeCch-hhccCCC-------CCCeeEEecCCccc----------CCC
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFP-GIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQF----------IPP 73 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~----------~~~ 73 (180)
..++++|||||+++|..+..+++..| +.+++.+|..+ ..+.|++ ..+++++.++..+. .+.
T Consensus 57 ~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~ 136 (227)
T d1susa1 57 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS 136 (227)
T ss_dssp HHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTC
T ss_pred hcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCc
Confidence 45789999999999999999998875 68999999944 6666653 56899999998542 236
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 74 SDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 74 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
||+|+.-.-= ......++.+.+.|+| ||.+++-+
T Consensus 137 fD~iFiDa~k-----~~y~~~~e~~~~ll~~---gGiii~DN 170 (227)
T d1susa1 137 YDFIFVDADK-----DNYLNYHKRLIDLVKV---GGVIGYDN 170 (227)
T ss_dssp BSEEEECSCS-----TTHHHHHHHHHHHBCT---TCCEEEET
T ss_pred eeEEEeccch-----hhhHHHHHHHHhhcCC---CcEEEEcc
Confidence 9999985421 2233778899999999 55555533
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.59 E-value=2.9e-08 Score=72.03 Aligned_cols=97 Identities=16% Similarity=0.175 Sum_probs=69.9
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----------CCCeeEEecCCccc----CCCccEEE
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----------TDNLKYIEGDMFQF----IPPSDAFF 78 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----------~~~~~~~~~d~~~~----~~~~D~v~ 78 (180)
+.+++||-||.|.|..++.+++..+..+++.+|+.+ +++.+++ .++++++.+|.... ...||+|+
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII 184 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 184 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence 568899999999999999999887778999999954 7776653 47899999998652 34699999
Q ss_pred eccccccCC--hHHHHHHHHHHHHhhccCCCCcEEEE
Q 030291 79 FKTVFHFFD--DEDCLKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 79 ~~~~l~~~~--~~~~~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
+-..-..-+ .....++++.+++.|+| +|.++.
T Consensus 185 ~D~~dp~~~~~~L~t~eFy~~~~~~L~~---~Gi~v~ 218 (312)
T d2b2ca1 185 TDSSDPVGPAESLFGQSYYELLRDALKE---DGILSS 218 (312)
T ss_dssp ECCC-------------HHHHHHHHEEE---EEEEEE
T ss_pred EcCCCCCCcchhhhhHHHHHHHHhhcCC---CcEEEE
Confidence 843211111 12234889999999999 555554
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.59 E-value=5.7e-08 Score=69.45 Aligned_cols=97 Identities=15% Similarity=0.117 Sum_probs=72.3
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCc-hhhccCCC----------CCCeeEEecCCcc----cCCCccEEE
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLP-HAVTDMPQ----------TDNLKYIEGDMFQ----FIPPSDAFF 78 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~-~~~~~a~~----------~~~~~~~~~d~~~----~~~~~D~v~ 78 (180)
+++++||-||.|.|..+..+++..+..+++.+|+. ++++.+++ .+|++++.+|... ....||+|+
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi 153 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence 56789999999999999999988777899999994 47776653 5799999999865 233699999
Q ss_pred eccccc--cCChHHHHHHHHHHHHhhccCCCCcEEEE
Q 030291 79 FKTVFH--FFDDEDCLKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 79 ~~~~l~--~~~~~~~~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
+-..-. ........++++.+++.|+| +|.++.
T Consensus 154 ~D~~~p~~~~~~L~t~eFy~~~~~~L~~---~Gv~v~ 187 (274)
T d1iy9a_ 154 VDSTEPVGPAVNLFTKGFYAGIAKALKE---DGIFVA 187 (274)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEE---EEEEEE
T ss_pred EcCCCCCCcchhhccHHHHHHHHhhcCC---CceEEE
Confidence 743211 11111123889999999999 555554
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.58 E-value=4.4e-08 Score=70.59 Aligned_cols=97 Identities=14% Similarity=0.134 Sum_probs=73.2
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----------CCCeeEEecCCcc---c--CCCccEE
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----------TDNLKYIEGDMFQ---F--IPPSDAF 77 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----------~~~~~~~~~d~~~---~--~~~~D~v 77 (180)
+++++||-||.|.|..++.+++..+..+++.+|+.+ +++.+++ .++++++.+|... . ...||+|
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI 158 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 158 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence 578899999999999999999988778999999955 7777764 6899999999755 2 2369999
Q ss_pred Eecccc--ccCChHHHHHHHHHHHHhhccCCCCcEEEE
Q 030291 78 FFKTVF--HFFDDEDCLKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 78 ~~~~~l--~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
++-..= .........++++.+++.|+| +|.++.
T Consensus 159 i~D~~dp~~~~~~L~t~eF~~~~~~~L~~---~Gi~v~ 193 (290)
T d1xj5a_ 159 IVDSSDPIGPAKELFEKPFFQSVARALRP---GGVVCT 193 (290)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEE---EEEEEE
T ss_pred EEcCCCCCCcchhhCCHHHHHHHHHhcCC---CcEEEE
Confidence 973321 111112234899999999999 555555
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.56 E-value=4.6e-08 Score=70.09 Aligned_cols=96 Identities=13% Similarity=0.132 Sum_probs=69.7
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----------------CCCeeEEecCCcc---cCCC
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----------------TDNLKYIEGDMFQ---FIPP 73 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----------------~~~~~~~~~d~~~---~~~~ 73 (180)
+++++||-||+|.|..+..+++. +..+++.+|+.+ +++.+++ .+|++++.+|... ....
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~ 149 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 149 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCceEEEecCCchHHHHHHHHh-CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCC
Confidence 67899999999999999988765 456899999954 7776652 4689999999865 2357
Q ss_pred ccEEEeccccccCCh--HHHHHHHHHHHHhhccCCCCcEEEE
Q 030291 74 SDAFFFKTVFHFFDD--EDCLKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 74 ~D~v~~~~~l~~~~~--~~~~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
||+|++-..-..-+. ....++++.+++.|+| +|.+++
T Consensus 150 yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~---~Gv~v~ 188 (276)
T d1mjfa_ 150 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNN---PGIYVT 188 (276)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEE---EEEEEE
T ss_pred CCEEEEeCCCCCCCcccccCHHHHHhhHhhcCC---CceEEE
Confidence 999997432211111 1124889999999999 665554
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.53 E-value=1.4e-07 Score=64.51 Aligned_cols=92 Identities=18% Similarity=0.320 Sum_probs=71.7
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch----hhccCCC---CCCeeEEecCCccc--CCCccEEEecccccc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH----AVTDMPQ---TDNLKYIEGDMFQF--IPPSDAFFFKTVFHF 85 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~----~~~~a~~---~~~~~~~~~d~~~~--~~~~D~v~~~~~l~~ 85 (180)
++.+++|+|+|.|.-+..++-.+|+.+++.+|... .+..+.. ..++++.+....+. ...||+|++..+-
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fD~V~sRA~~-- 142 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAFA-- 142 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCSS--
T ss_pred cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhccccccceehhhhhc--
Confidence 35689999999999999999999999999999843 3333322 56899999988553 3369999987763
Q ss_pred CChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 86 FDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
+.. .+++-+...+++ +|.+++.-
T Consensus 143 --~~~--~ll~~~~~~l~~---~g~~~~~K 165 (207)
T d1jsxa_ 143 --SLN--DMVSWCHHLPGE---QGRFYALK 165 (207)
T ss_dssp --SHH--HHHHHHTTSEEE---EEEEEEEE
T ss_pred --CHH--HHHHHHHHhcCC---CcEEEEEC
Confidence 233 778899999999 88887754
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.45 E-value=9.3e-07 Score=60.81 Aligned_cols=106 Identities=13% Similarity=0.143 Sum_probs=72.5
Q ss_pred ccccccccccccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCch-hhccCCCCCCeeEEecCCcccC--CCccEEE
Q 030291 3 TLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQFI--PPSDAFF 78 (180)
Q Consensus 3 ~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~~--~~~D~v~ 78 (180)
+.|++.+. .+.+.+|||.|||+|.++..+.+.. ....++++|+.+ .+..++ +....++|..... ..||+++
T Consensus 9 ~~m~~l~~--~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~---~~~~~~~~~~~~~~~~~fd~ii 83 (223)
T d2ih2a1 9 DFMVSLAE--APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP---WAEGILADFLLWEPGEAFDLIL 83 (223)
T ss_dssp HHHHHHCC--CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT---TEEEEESCGGGCCCSSCEEEEE
T ss_pred HHHHHhcC--CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcc---cceeeeeehhccccccccceec
Confidence 34555555 5678899999999999988887664 456799999965 444433 3566777775533 3699999
Q ss_pred eccccccCC---h------------------------HHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 79 FKTVFHFFD---D------------------------EDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 79 ~~~~l~~~~---~------------------------~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
++-...... . .....++.+..+.|++ ||.+.+.-+
T Consensus 84 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~---~G~~~~I~p 145 (223)
T d2ih2a1 84 GNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKP---GGVLVFVVP 145 (223)
T ss_dssp ECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred ccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhccc---CCceEEEEe
Confidence 864432110 0 0123668889999999 888887654
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.41 E-value=4.1e-07 Score=61.15 Aligned_cols=94 Identities=12% Similarity=0.212 Sum_probs=65.2
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCccc----CCCccEEEecccc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQF----IPPSDAFFFKTVF 83 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~----~~~~D~v~~~~~l 83 (180)
.+.+|||++||+|.++...+.+.. .+++.+|.+. +++.+++ ..+++++..|++.. ...||+|++.=-.
T Consensus 43 ~~~~vLDlfaGsG~~giealsrGa-~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY 121 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 121 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred chhhhhhhhccccceeeeEEecCc-ceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCcc
Confidence 467899999999999999888853 3799999955 6665553 56788999998652 2359999995332
Q ss_pred ccCChHHHHHHHHHHHH--hhccCCCCcEEEEEEe
Q 030291 84 HFFDDEDCLKLLKKCRE--AIASNGERGKVLIIDI 116 (180)
Q Consensus 84 ~~~~~~~~~~~l~~~~~--~L~p~~~~G~~~~~~~ 116 (180)
.. .. ...++..+.+ +|++ +|.+ +.+.
T Consensus 122 ~~-~~--~~~~l~~l~~~~~L~~---~~iI-iiE~ 149 (183)
T d2fpoa1 122 RR-GL--LEETINLLEDNGWLAD---EALI-YVES 149 (183)
T ss_dssp ST-TT--HHHHHHHHHHTTCEEE---EEEE-EEEE
T ss_pred cc-ch--HHHHHHHHHHCCCCCC---CeEE-EEEe
Confidence 21 11 2255666664 5898 5544 4443
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.34 E-value=4.2e-06 Score=55.86 Aligned_cols=104 Identities=13% Similarity=0.206 Sum_probs=72.5
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHH-CCCCeEEEeeCchhhccCCCCCCeeEEecCCccc-----------CC
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEA-FPGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQF-----------IP 72 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~-~~~~~~~~~D~~~~~~~a~~~~~~~~~~~d~~~~-----------~~ 72 (180)
|.+++. .+++..+||||||++|.++..+.+. .+...++++|+..+ ....++.+.++|+.+. ..
T Consensus 13 I~~k~~-l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~----~~i~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (180)
T d1ej0a_ 13 IQQSDK-LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM----DPIVGVDFLQGDFRDELVMKALLERVGDS 87 (180)
T ss_dssp HHHHHC-CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC----CCCTTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred HHHHhC-ccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc----cccCCceEeecccccchhhhhhhhhccCc
Confidence 444554 4678899999999999999988775 45578999997542 2356788899998641 13
Q ss_pred CccEEEeccccccCChH---------HHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 73 PSDAFFFKTVFHFFDDE---------DCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 73 ~~D~v~~~~~l~~~~~~---------~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
.+|+|++-.+.....+. .....+.-+.+.|++ ||.+++--+
T Consensus 88 ~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~---gG~fV~K~F 137 (180)
T d1ej0a_ 88 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAP---GGSFVVKVF 137 (180)
T ss_dssp CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred ceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCC---CCcEEEEEe
Confidence 59999997665443321 122446667799999 677766443
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.33 E-value=4.9e-07 Score=60.60 Aligned_cols=110 Identities=21% Similarity=0.234 Sum_probs=80.6
Q ss_pred CcccccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeC-chhhccCCC--CCCeeEEecCCcc--------
Q 030291 1 MATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDL-PHAVTDMPQ--TDNLKYIEGDMFQ-------- 69 (180)
Q Consensus 1 ~~~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~--~~~~~~~~~d~~~-------- 69 (180)
|++++++.+. ..++..++|..+|.|..+..+++. +.+++++|. +.++..+++ ..++.+++.++.+
T Consensus 6 ll~Evl~~l~--~~~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~ 81 (182)
T d1wg8a2 6 LYQEALDLLA--VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAAL 81 (182)
T ss_dssp THHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHT
T ss_pred HHHHHHHhcC--CCCCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHc
Confidence 4566777776 788999999999999999999997 568999999 457777654 6789999998844
Q ss_pred cCCCccEEEecccccc--CCh-----HHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 70 FIPPSDAFFFKTVFHF--FDD-----EDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 70 ~~~~~D~v~~~~~l~~--~~~-----~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
....+|.|++-..+.. +.+ ......|....+.|++ ||.+++..+.
T Consensus 82 ~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~---gg~~~ii~fh 133 (182)
T d1wg8a2 82 GVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAP---GGRLVVIAFH 133 (182)
T ss_dssp TCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEE---EEEEEEEECS
T ss_pred CCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCC---CCeEEEEecc
Confidence 1235888887432211 111 1123468888999999 8988887754
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=1.8e-07 Score=66.83 Aligned_cols=76 Identities=18% Similarity=0.322 Sum_probs=57.2
Q ss_pred ccccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcc-cCCC
Q 030291 3 TLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQ-FIPP 73 (180)
Q Consensus 3 ~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~-~~~~ 73 (180)
+.+++... ..+.+.|||||+|+|.+|..|++. +.+++++|... +....++ ..+++++.+|++. ..+.
T Consensus 11 ~kIv~~~~--~~~~d~VlEIGPG~G~LT~~Ll~~--~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~~ 86 (278)
T d1zq9a1 11 NSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF 86 (278)
T ss_dssp HHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC
T ss_pred HHHHHHhC--CCCCCEEEEECCCchHHHHHHHhc--CCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhhh
Confidence 34555555 678899999999999999999998 45799999954 5544432 3689999999977 4456
Q ss_pred ccEEEeccc
Q 030291 74 SDAFFFKTV 82 (180)
Q Consensus 74 ~D~v~~~~~ 82 (180)
++.|+++--
T Consensus 87 ~~~vV~NLP 95 (278)
T d1zq9a1 87 FDTCVANLP 95 (278)
T ss_dssp CSEEEEECC
T ss_pred hhhhhcchH
Confidence 667766533
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.27 E-value=2.8e-06 Score=58.95 Aligned_cols=96 Identities=14% Similarity=0.190 Sum_probs=64.1
Q ss_pred CCCeEEEeCCcccHHHHHHHHH----CCCCeEEEeeCc-hhhccC-CCCCCeeEEecCCccc-----CC--CccEEEecc
Q 030291 15 GLRSMVDVGGGTGAFARIISEA----FPGIKCTVLDLP-HAVTDM-PQTDNLKYIEGDMFQF-----IP--PSDAFFFKT 81 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~----~~~~~~~~~D~~-~~~~~a-~~~~~~~~~~~d~~~~-----~~--~~D~v~~~~ 81 (180)
.+++|||||++.|..+..++.. .+..+++++|+. ...... ....++++..+|..+. .. .+|+|+.-+
T Consensus 80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID~ 159 (232)
T d2bm8a1 80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 159 (232)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHHHHHHHhcCCCEEEEcC
Confidence 4789999999999877665543 367899999984 333222 2368999999987541 11 478887754
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
. |+ .+..... + .+...|++ ||.+++-|..
T Consensus 160 ~-H~-~~~v~~~-~-~~~~lLk~---GG~iIveD~i 188 (232)
T d2bm8a1 160 A-HA-NTFNIMK-W-AVDHLLEE---GDYFIIEDMI 188 (232)
T ss_dssp S-CS-SHHHHHH-H-HHHHTCCT---TCEEEECSCH
T ss_pred C-cc-hHHHHHH-H-HHhcccCc---CCEEEEEcCC
Confidence 4 43 3333222 3 35689999 8888886653
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.24 E-value=5.7e-07 Score=65.79 Aligned_cols=100 Identities=10% Similarity=0.171 Sum_probs=69.7
Q ss_pred cCCCeEEEeCCcccHHHHHHHHH-----CCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCccc--CCCccEEEec
Q 030291 14 QGLRSMVDVGGGTGAFARIISEA-----FPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQF--IPPSDAFFFK 80 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~-----~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~~--~~~~D~v~~~ 80 (180)
+.+.+|||.+||+|.+...+... .+...++|+|+++ ++..|+. ..+....++|.... ...||+|+++
T Consensus 116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~vi~N 195 (328)
T d2f8la1 116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISD 195 (328)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEE
T ss_pred CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccC
Confidence 45678999999999998887654 2345789999955 6666652 45667777777553 3469999997
Q ss_pred cccccCChH----------------HHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 81 TVFHFFDDE----------------DCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 81 ~~l~~~~~~----------------~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
=-+...... ....++..+.+.|+| ||++.+.-+
T Consensus 196 PPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~---~G~~~~I~p 244 (328)
T d2f8la1 196 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKP---GGYLFFLVP 244 (328)
T ss_dssp CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred CCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCC---CCceEEEec
Confidence 443221111 122479999999999 888777654
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.24 E-value=1.4e-06 Score=60.64 Aligned_cols=94 Identities=19% Similarity=0.323 Sum_probs=71.5
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch----hhccCCC---CCCeeEEecCCccc------CCCccEEEe
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH----AVTDMPQ---TDNLKYIEGDMFQF------IPPSDAFFF 79 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~----~~~~a~~---~~~~~~~~~d~~~~------~~~~D~v~~ 79 (180)
.+...+++|||+|.|.-+..++-.+|+.+++.+|... .+..+.+ ..++.+++..+.+. ...||+|++
T Consensus 68 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~s 147 (239)
T d1xdza_ 68 FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA 147 (239)
T ss_dssp GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred ccCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEE
Confidence 3467899999999999999999999999999999843 3333332 57888888877331 135999999
Q ss_pred ccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 80 KTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 80 ~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
..+- +.. .++..+...+++ +|.+++.-
T Consensus 148 RAva----~l~--~ll~~~~~~l~~---~g~~i~~K 174 (239)
T d1xdza_ 148 RAVA----RLS--VLSELCLPLVKK---NGLFVALK 174 (239)
T ss_dssp ECCS----CHH--HHHHHHGGGEEE---EEEEEEEE
T ss_pred hhhh----CHH--HHHHHHhhhccc---CCEEEEEC
Confidence 7664 333 779999999999 78777753
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.24 E-value=1.4e-06 Score=58.42 Aligned_cols=95 Identities=13% Similarity=0.116 Sum_probs=66.1
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCccc-------CCCccEEEe
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQF-------IPPSDAFFF 79 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~-------~~~~D~v~~ 79 (180)
.+.+|||+.||+|.++...+.... .+++.+|.+. ++..+++ ..++++.+.|+... ...||+|++
T Consensus 41 ~~~~vLDlfaGsG~~g~ea~srGa-~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIfl 119 (182)
T d2fhpa1 41 DGGMALDLYSGSGGLAIEAVSRGM-DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL 119 (182)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCEEEEcccccccccceeeecch-hHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEEe
Confidence 578999999999999999888852 3799999965 6666653 45899999998542 225999997
Q ss_pred ccccccCChHHHHHHHHHHHH--hhccCCCCcEEEEEEee
Q 030291 80 KTVFHFFDDEDCLKLLKKCRE--AIASNGERGKVLIIDIV 117 (180)
Q Consensus 80 ~~~l~~~~~~~~~~~l~~~~~--~L~p~~~~G~~~~~~~~ 117 (180)
.=-.. ..+ ....+..+.+ .|++ +| +++.+..
T Consensus 120 DPPY~-~~~--~~~~l~~i~~~~~L~~---~g-iIi~E~~ 152 (182)
T d2fhpa1 120 DPPYA-KQE--IVSQLEKMLERQLLTN---EA-VIVCETD 152 (182)
T ss_dssp CCCGG-GCC--HHHHHHHHHHTTCEEE---EE-EEEEEEE
T ss_pred chhhh-hhH--HHHHHHHHHHCCCCCC---CE-EEEEEcC
Confidence 32211 112 2256777754 6998 55 5555543
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.19 E-value=1.6e-07 Score=66.25 Aligned_cols=63 Identities=21% Similarity=0.264 Sum_probs=49.9
Q ss_pred ccccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----CCCeeEEecCCcc
Q 030291 3 TLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----TDNLKYIEGDMFQ 69 (180)
Q Consensus 3 ~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----~~~~~~~~~d~~~ 69 (180)
+.+++... ..+++.|||||||+|.+|..|++. ..+++++|+.. +.+..+. ..+++++.+|+..
T Consensus 11 ~~Iv~~~~--~~~~d~vlEIGpG~G~LT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~ 78 (252)
T d1qyra_ 11 DSIVSAIN--PQKGQAMVEIGPGLAALTEPVGER--LDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMT 78 (252)
T ss_dssp HHHHHHHC--CCTTCCEEEECCTTTTTHHHHHTT--CSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGG
T ss_pred HHHHHhcC--CCCCCEEEEECCCchHHHHHHHcc--CCceEEEEeccchhHHHHHHhhhccchhHHhhhhhh
Confidence 44556665 678899999999999999999988 45799999955 5554432 5789999999976
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.02 E-value=4e-06 Score=61.91 Aligned_cols=65 Identities=14% Similarity=0.148 Sum_probs=52.7
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcccC-------CCccEEE
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQFI-------PPSDAFF 78 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~~-------~~~D~v~ 78 (180)
..+..+|||+-||.|.++..|++. ..+++++|.++ +++.|++ ..|++++.++..+.. ..+|+|+
T Consensus 210 ~~~~~~vlDLycG~G~fsl~La~~--~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vi 287 (358)
T d1uwva2 210 VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL 287 (358)
T ss_dssp CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEE
T ss_pred cCCCceEEEecccccccchhcccc--ccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEE
Confidence 557889999999999999999887 55799999965 7777764 578999999885532 2589988
Q ss_pred e
Q 030291 79 F 79 (180)
Q Consensus 79 ~ 79 (180)
.
T Consensus 288 l 288 (358)
T d1uwva2 288 L 288 (358)
T ss_dssp E
T ss_pred e
Confidence 7
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=98.01 E-value=1.2e-05 Score=55.75 Aligned_cols=103 Identities=13% Similarity=0.115 Sum_probs=63.6
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCC---C--C-CCeeEEecCCccc--CCCccE
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMP---Q--T-DNLKYIEGDMFQF--IPPSDA 76 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~---~--~-~~~~~~~~d~~~~--~~~~D~ 76 (180)
+.+.+. +.+..+|+|+|||.|.++..+++..+..++.++++.-...... + . .-+++...+.... ....|+
T Consensus 58 ~~~~~~--~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~l~~~~~D~ 135 (257)
T d2p41a1 58 FVERNL--VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDT 135 (257)
T ss_dssp HHHTTS--SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSE
T ss_pred HHHhcC--ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHHhcCCCcCCE
Confidence 344444 7788899999999999999998886666777777621111111 1 1 1233433322222 235999
Q ss_pred EEeccccccCCh-----HHHHHHHHHHHHhhccCCCCcEEEE
Q 030291 77 FFFKTVFHFFDD-----EDCLKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 77 v~~~~~l~~~~~-----~~~~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
|+|-..-. .++ .....+|.-+.++|+| ||.+++
T Consensus 136 vlcDm~es-s~~~~vd~~Rtl~vLela~~wLk~---gg~Fvv 173 (257)
T d2p41a1 136 LLCDIGES-SPNPTVEAGRTLRVLNLVENWLSN---NTQFCV 173 (257)
T ss_dssp EEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCT---TCEEEE
T ss_pred EEeeCCCC-CCCchhhhhhHHHHHHHHHHHccc---CCEEEE
Confidence 99965432 222 2233667778899999 887655
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=97.62 E-value=3.8e-05 Score=55.11 Aligned_cols=148 Identities=13% Similarity=0.124 Sum_probs=89.3
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCC---------CCCeeEEecCCcccC----------C-C
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ---------TDNLKYIEGDMFQFI----------P-P 73 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~---------~~~~~~~~~d~~~~~----------~-~ 73 (180)
.+...|+.+|||.-.....+ ...++++++-+|.+++++..++ ..+...+..|+.+.+ + .
T Consensus 88 ~g~~qvV~LGaGlDTr~~Rl-~~~~~~~~~EvD~p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~ 166 (297)
T d2uyoa1 88 DGIRQFVILASGLDSRAYRL-DWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSA 166 (297)
T ss_dssp TTCCEEEEETCTTCCHHHHS-CCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTS
T ss_pred hCCCeEEEeCcccCChhhhc-CCCcCceEEEcCChHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCC
Confidence 44567788999998776665 3356888999998876554332 345677777775421 1 2
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchh-h-hhhhhccceeeEe------ecCCc
Q 030291 74 SDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRE-L-TESKLLFDIFMNF------NVGGK 145 (180)
Q Consensus 74 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~------~~~~~ 145 (180)
.-++++-+++.|++.+...++|+.+.+...| |+.++ .+........... . ............. .....
T Consensus 167 ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~---GS~l~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (297)
T d2uyoa1 167 RTAWLAEGLLMYLPATAQDGLFTEIGGLSAV---GSRIA-VETSPLHGDEWREQMQLRFRRVSDALGFEQAVDVQELIYH 242 (297)
T ss_dssp CEEEEECSCGGGSCHHHHHHHHHHHHHTCCT---TCEEE-EECCCTTCSHHHHHHHHHHHHHHC-----------CCTTC
T ss_pred CEEEEEccccccCCHHHHHHHHHHHHHhCCC---CCEEE-EEecccccchhHHHHHHHHHHHHhhhccccCCChHhhccC
Confidence 4578888999999999999999999999988 55554 4443222211110 0 0011111111100 00011
Q ss_pred ccCHHHHHHHHHHcCCeEEEE
Q 030291 146 ERTEQEWGSLFVNAGFTHYKI 166 (180)
Q Consensus 146 ~~~~~~~~~~l~~aGf~~~~~ 166 (180)
..+..+..+.|++.||++...
T Consensus 243 ~~~~~~~~~~l~~~Gw~~~~~ 263 (297)
T d2uyoa1 243 DENRAVVADWLNRHGWRATAQ 263 (297)
T ss_dssp CTTCCCHHHHHTTTTEEEEEE
T ss_pred CCchhhHHHHHHhCCCEEEEe
Confidence 224457788899999986654
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=97.62 E-value=0.0002 Score=47.58 Aligned_cols=95 Identities=17% Similarity=0.265 Sum_probs=62.1
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC--------CCCeeEEecCCccc------CCCccEEEe
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ--------TDNLKYIEGDMFQF------IPPSDAFFF 79 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~--------~~~~~~~~~d~~~~------~~~~D~v~~ 79 (180)
.+.++||+-||+|.++...+.+.. .+++.+|.+. .+...++ .....+...|..+. .+.||+|++
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRGA-~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFl 121 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 121 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred ccceEeecccCccceeeeeeeecc-eeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEe
Confidence 467899999999999999998853 3899999854 5544432 33566667765431 235999988
Q ss_pred ccccccCChHHHHHHHHHHHH--hhccCCCCcEEEEEEee
Q 030291 80 KTVFHFFDDEDCLKLLKKCRE--AIASNGERGKVLIIDIV 117 (180)
Q Consensus 80 ~~~l~~~~~~~~~~~l~~~~~--~L~p~~~~G~~~~~~~~ 117 (180)
-=-.. .... ...+..+.+ +|++ +.+++.+..
T Consensus 122 DPPY~-~~~~--~~~l~~l~~~~~L~~----~~liiiE~~ 154 (183)
T d2ifta1 122 DPPFH-FNLA--EQAISLLCENNWLKP----NALIYVETE 154 (183)
T ss_dssp CCCSS-SCHH--HHHHHHHHHTTCEEE----EEEEEEEEE
T ss_pred chhHh-hhhH--HHHHHHHHHhCCcCC----CcEEEEEec
Confidence 32211 1222 256777764 6898 555555543
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.60 E-value=0.00031 Score=49.91 Aligned_cols=108 Identities=12% Similarity=0.123 Sum_probs=73.2
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcc----cCCCccEEEe--
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ----FIPPSDAFFF-- 79 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~----~~~~~D~v~~-- 79 (180)
..++.+|||+.++.|.-+..+++...+.++++.|.+. .+...++ ..++.....|... ....||.|++
T Consensus 100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~Da 179 (284)
T d1sqga2 100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 179 (284)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEec
Confidence 4678899999999999999999887778899999854 4444432 2344444444422 1235999996
Q ss_pred ----ccccccCCh--------------HHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCC
Q 030291 80 ----KTVFHFFDD--------------EDCLKLLKKCREAIASNGERGKVLIIDIVIDEKED 123 (180)
Q Consensus 80 ----~~~l~~~~~--------------~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~ 123 (180)
.+++..-++ ..+.++|.++.+.|+| ||.++-+.......+.
T Consensus 180 PCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~---gG~lvYsTCS~~~~EN 238 (284)
T d1sqga2 180 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKT---GGTLVYATCSVLPEEN 238 (284)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEE---EEEEEEEESCCCGGGT
T ss_pred cccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCC---CceEEEeeecCchhhC
Confidence 233433232 1255789999999999 8888887766544433
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.55 E-value=0.00045 Score=49.74 Aligned_cols=108 Identities=11% Similarity=0.136 Sum_probs=73.4
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCch-hhccCCC------CCCeeEEecCCccc---CCCccEEEe--
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQF---IPPSDAFFF-- 79 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~---~~~~D~v~~-- 79 (180)
..++.+|||+.+|.|.=+..+++.. ....+++.|.+. .+...++ ..++.....|.... ...||.|++
T Consensus 114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDa 193 (313)
T d1ixka_ 114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 193 (313)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEEcc
Confidence 4678899999999999988888775 356899999954 4444432 46777777776442 336999986
Q ss_pred ----ccccccCCh--------------HHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCC
Q 030291 80 ----KTVFHFFDD--------------EDCLKLLKKCREAIASNGERGKVLIIDIVIDEKED 123 (180)
Q Consensus 80 ----~~~l~~~~~--------------~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~ 123 (180)
.+++..-++ ..+.++|.+..+.+|| ||.++-+.......+.
T Consensus 194 PCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~---gG~lVYsTCSl~~eEN 252 (313)
T d1ixka_ 194 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKP---GGILVYSTCSLEPEEN 252 (313)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEESCCCGGGT
T ss_pred ccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCC---CcEEEEeeccCChHhH
Confidence 223322221 2345788999999999 8888777765544433
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.41 E-value=6e-05 Score=56.76 Aligned_cols=108 Identities=17% Similarity=0.110 Sum_probs=70.0
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHCC-------------CCeEEEeeCch-hhccCC--------CCCCee
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFP-------------GIKCTVLDLPH-AVTDMP--------QTDNLK 61 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~-------------~~~~~~~D~~~-~~~~a~--------~~~~~~ 61 (180)
.|++.+. .....+|+|..||+|.+...+.+... ...+.++|... +...++ ......
T Consensus 153 ~mv~ll~--~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~ 230 (425)
T d2okca1 153 AMVDCIN--PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSP 230 (425)
T ss_dssp HHHHHHC--CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCS
T ss_pred hhheecc--CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccce
Confidence 3444444 45678999999999999887765421 23488999844 443332 134456
Q ss_pred EEecCCcccC--CCccEEEeccccccCC---------------hHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 62 YIEGDMFQFI--PPSDAFFFKTVFHFFD---------------DEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 62 ~~~~d~~~~~--~~~D~v~~~~~l~~~~---------------~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
....|.+... ..||+|+++=-+..-. ......++..+.+.|++ ||++.++-+
T Consensus 231 i~~~d~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~---~G~~~iI~p 299 (425)
T d2okca1 231 IVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKT---GGRAAVVLP 299 (425)
T ss_dssp EEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred eecCchhhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCC---CCeEEEEec
Confidence 7778876633 3699999863332110 01123589999999999 898887755
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.29 E-value=0.0026 Score=41.16 Aligned_cols=94 Identities=11% Similarity=0.128 Sum_probs=63.5
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCC-CCeeEEecCCcc-----------cC-CCccEE
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQT-DNLKYIEGDMFQ-----------FI-PPSDAF 77 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~-~~~~~~~~d~~~-----------~~-~~~D~v 77 (180)
.+++++||=+|||. |.++..+++.. +++++++|.++ .++.+++. ....+...+..+ .. ..+|+|
T Consensus 24 ~~~g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~v 102 (170)
T d1e3ja2 24 VQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVT 102 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEE
T ss_pred CCCCCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCcee
Confidence 67888999999885 77887788776 78999999955 67777652 222222221111 01 248988
Q ss_pred EeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeee
Q 030291 78 FFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVI 118 (180)
Q Consensus 78 ~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~ 118 (180)
+-... .+ ..+....+.+++ +|.+++.....
T Consensus 103 id~~g-----~~---~~~~~a~~~~~~---~G~iv~~G~~~ 132 (170)
T d1e3ja2 103 IDCSG-----NE---KCITIGINITRT---GGTLMLVGMGS 132 (170)
T ss_dssp EECSC-----CH---HHHHHHHHHSCT---TCEEEECSCCS
T ss_pred eecCC-----Ch---HHHHHHHHHHhc---CCceEEEecCC
Confidence 75332 22 568888999999 99999887543
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.25 E-value=0.0017 Score=46.94 Aligned_cols=105 Identities=11% Similarity=0.160 Sum_probs=80.2
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCC---------------------------CCCeeEEecC
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ---------------------------TDNLKYIEGD 66 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~---------------------------~~~~~~~~~d 66 (180)
.+...|+-+|||.-...-.+...+++++++-+|.+++++.-++ .++...+..|
T Consensus 95 ~~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~D 174 (328)
T d1rjda_ 95 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 174 (328)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCCcEEEEeCCccchHHHHhhccCCCcEEEECCcHHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEecC
Confidence 3456899999999988888888888988999998774332210 4677888888
Q ss_pred Cccc-----------CC-CccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCC
Q 030291 67 MFQF-----------IP-PSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKE 122 (180)
Q Consensus 67 ~~~~-----------~~-~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~ 122 (180)
+.+. .+ ..-++++-+++.|++.....++++.+.+.... +.+++.|+..+..+
T Consensus 175 L~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~~----~~~i~YE~i~~~~p 238 (328)
T d1rjda_ 175 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFSH----GLWISYDPIGGSQP 238 (328)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSS----EEEEEEEECCCCST
T ss_pred CCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCCC----ceEEEeccCCCCCC
Confidence 8541 01 24578899999999999988999999988865 88999998865433
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.23 E-value=0.00048 Score=50.79 Aligned_cols=94 Identities=13% Similarity=0.057 Sum_probs=68.3
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC---------------------CCCeeEEecCCcc---
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ---------------------TDNLKYIEGDMFQ--- 69 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~---------------------~~~~~~~~~d~~~--- 69 (180)
++.+|||..||+|..+.+.+.+.+..+++..|+++ .++.+++ ...+.+.+.|...
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 46789999999999999988877667899999965 7777653 1234555666532
Q ss_pred c-CCCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 70 F-IPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 70 ~-~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
. ...||+|..-- +..+. .+|....+.++. ||.+.++.+.
T Consensus 125 ~~~~~fDvIDiDP----fGs~~--pfldsAi~a~~~---~Gll~vTaTD 164 (375)
T d2dula1 125 ERHRYFHFIDLDP----FGSPM--EFLDTALRSAKR---RGILGVTATD 164 (375)
T ss_dssp HSTTCEEEEEECC----SSCCH--HHHHHHHHHEEE---EEEEEEEECC
T ss_pred hhcCcCCcccCCC----CCCcH--HHHHHHHHHhcc---CCEEEEEecC
Confidence 1 22599988732 33444 789999999999 7888777653
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.13 E-value=0.0001 Score=53.46 Aligned_cols=55 Identities=13% Similarity=0.182 Sum_probs=42.2
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCC---CCCCeeEEecCCcc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMP---QTDNLKYIEGDMFQ 69 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~---~~~~~~~~~~d~~~ 69 (180)
...+|||||+|.|.+|..+++...-.+++++|... ..+..+ ...+++++.+|++.
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l~ 101 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 101 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccCCCcEEEeCchhh
Confidence 56789999999999999999874234799999844 443333 25789999999863
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=97.02 E-value=0.0013 Score=48.11 Aligned_cols=149 Identities=15% Similarity=0.187 Sum_probs=87.8
Q ss_pred CCCeEEEeCCcccHHHH--------HHHHH--------CCCCeEEEeeCch-h---hccCC-C----CCC--eeEEecCC
Q 030291 15 GLRSMVDVGGGTGAFAR--------IISEA--------FPGIKCTVLDLPH-A---VTDMP-Q----TDN--LKYIEGDM 67 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~--------~l~~~--------~~~~~~~~~D~~~-~---~~~a~-~----~~~--~~~~~~d~ 67 (180)
..-+|.|+||.+|.++. .+.+. -|..++..-|+|. . +-+.. . ..+ +..+.+++
T Consensus 51 ~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSF 130 (359)
T d1m6ex_ 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCch
Confidence 34578999999998763 22221 2566788889854 1 11111 1 122 23456777
Q ss_pred cc---cCCCccEEEeccccccCCh-------------------------------HHHHHHHHHHHHhhccCCCCcEEEE
Q 030291 68 FQ---FIPPSDAFFFKTVFHFFDD-------------------------------EDCLKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 68 ~~---~~~~~D~v~~~~~l~~~~~-------------------------------~~~~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
.. |..+.|+++++.++|++.. .++..+|+.=++-|+| ||.+++
T Consensus 131 Y~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~---GG~mvl 207 (359)
T d1m6ex_ 131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVP---GGRMVL 207 (359)
T ss_dssp SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCT---TCEEEE
T ss_pred hhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CcEEEE
Confidence 66 2336999999999999742 1455688888899999 999999
Q ss_pred EEeeeCCCCCchh--------hhhhh------hccc--eeeEeecCCcccCHHHHHHHHHHcC-CeEEEE
Q 030291 114 IDIVIDEKEDDRE--------LTESK------LLFD--IFMNFNVGGKERTEQEWGSLFVNAG-FTHYKI 166 (180)
Q Consensus 114 ~~~~~~~~~~~~~--------~~~~~------~~~~--~~~~~~~~~~~~~~~~~~~~l~~aG-f~~~~~ 166 (180)
.-...++...... +...+ ...+ .......+...++.+|+++.+++.| |++.++
T Consensus 208 ~~~gr~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~~~ 277 (359)
T d1m6ex_ 208 TILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHI 277 (359)
T ss_dssp EEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEE
T ss_pred EEeccCCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHhccCccccCCHHHHHHHhccCCCeeeeee
Confidence 8776544322110 00000 0000 0000112234578999999999876 555544
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.99 E-value=0.0026 Score=41.44 Aligned_cols=93 Identities=16% Similarity=0.136 Sum_probs=61.9
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcc---c-----CCCccEEEeccc
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQ---F-----IPPSDAFFFKTV 82 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~---~-----~~~~D~v~~~~~ 82 (180)
.+++++||=+|||. |..+..+++......++++|.++ .++.+++..-..++..+-.+ . ...+|+|+-.-.
T Consensus 26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~G 105 (174)
T d1f8fa2 26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTG 105 (174)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSC
T ss_pred CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcCC
Confidence 77889999999987 56677777776455778889855 67777663323333322211 0 125898875332
Q ss_pred cccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 83 FHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 83 l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
.+ ..++.+.+.++| +|.+++...
T Consensus 106 -----~~---~~~~~~~~~~~~---~G~i~~~G~ 128 (174)
T d1f8fa2 106 -----SP---EILKQGVDALGI---LGKIAVVGA 128 (174)
T ss_dssp -----CH---HHHHHHHHTEEE---EEEEEECCC
T ss_pred -----cH---HHHHHHHhcccC---ceEEEEEee
Confidence 22 568889999999 899988764
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.94 E-value=0.0064 Score=39.31 Aligned_cols=96 Identities=13% Similarity=0.103 Sum_probs=64.3
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcc-----------cCCCccEEEe
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQ-----------FIPPSDAFFF 79 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~-----------~~~~~D~v~~ 79 (180)
++++++|+=+|+|. |..+..+++.....+++++|..+ .++.+++..--.+...+-.+ ....+|+|+-
T Consensus 24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid 103 (171)
T d1pl8a2 24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIE 103 (171)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEe
Confidence 67788999999987 66777777776333799999855 77777653222222222111 0125898876
Q ss_pred ccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeC
Q 030291 80 KTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVID 119 (180)
Q Consensus 80 ~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~ 119 (180)
... .+ ..++...+.+++ +|.+++......
T Consensus 104 ~~G-----~~---~~~~~a~~~~~~---gG~iv~~G~~~~ 132 (171)
T d1pl8a2 104 CTG-----AE---ASIQAGIYATRS---GGTLVLVGLGSE 132 (171)
T ss_dssp CSC-----CH---HHHHHHHHHSCT---TCEEEECSCCCS
T ss_pred ccC-----Cc---hhHHHHHHHhcC---CCEEEEEecCCC
Confidence 433 22 568899999999 999999875443
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.86 E-value=0.002 Score=41.70 Aligned_cols=92 Identities=10% Similarity=0.090 Sum_probs=61.1
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcc----cCCCccEEEeccccccC
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQ----FIPPSDAFFFKTVFHFF 86 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~----~~~~~D~v~~~~~l~~~ 86 (180)
.+++++||=+|+|. |.++..+++.. +++.+++|.++ ..+.+++...-.++...-.. ....+|+++-.-.-
T Consensus 28 ~~~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~--- 103 (168)
T d1uufa2 28 AGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAA--- 103 (168)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSS---
T ss_pred CCCCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeec---
Confidence 78899999999876 77888888887 78888888744 56666552222222222111 12359988764321
Q ss_pred ChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 87 DDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 87 ~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
+ ..++...+.+++ +|.+++...
T Consensus 104 --~---~~~~~~~~~l~~---~G~iv~~G~ 125 (168)
T d1uufa2 104 --P---HNLDDFTTLLKR---DGTMTLVGA 125 (168)
T ss_dssp --C---CCHHHHHTTEEE---EEEEEECCC
T ss_pred --c---hhHHHHHHHHhc---CCEEEEecc
Confidence 1 337778899999 899998764
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.86 E-value=0.00083 Score=43.66 Aligned_cols=94 Identities=19% Similarity=0.191 Sum_probs=60.3
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEe-cCCcc----cCCCccEEEecccccc
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIE-GDMFQ----FIPPSDAFFFKTVFHF 85 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~-~d~~~----~~~~~D~v~~~~~l~~ 85 (180)
.+++++||-+|+|. |.++..+++.. +++++++|.++ .++.+++..--.++. .+..+ ....+|+++..-.-.+
T Consensus 25 ~~~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~ 103 (168)
T d1piwa2 25 CGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLT 103 (168)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCST
T ss_pred cCCCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCc
Confidence 78899999999984 77777777765 78999999854 677776522112222 11111 1235898876422111
Q ss_pred CChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 86 FDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
+ ..+....+.++| +|.+++...
T Consensus 104 --~----~~~~~~~~~l~~---~G~iv~~G~ 125 (168)
T d1piwa2 104 --D----IDFNIMPKAMKV---GGRIVSISI 125 (168)
T ss_dssp --T----CCTTTGGGGEEE---EEEEEECCC
T ss_pred --c----chHHHHHHHhhc---cceEEEecc
Confidence 1 114557789999 899988764
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.85 E-value=0.005 Score=40.25 Aligned_cols=93 Identities=15% Similarity=0.144 Sum_probs=61.9
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCC-eEEEeeCch-hhccCCCCCCeeEEec---CCcc--------cCC-CccEE
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGI-KCTVLDLPH-AVTDMPQTDNLKYIEG---DMFQ--------FIP-PSDAF 77 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~-~~~~~D~~~-~~~~a~~~~~~~~~~~---d~~~--------~~~-~~D~v 77 (180)
.+++++||=+|+|. |..+..+++.. ++ +++++|.++ .++.+++..--.++.. +..+ ..+ .+|+|
T Consensus 26 ~~~G~~VlV~GaG~iG~~~~~~ak~~-Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvv 104 (182)
T d1vj0a2 26 SFAGKTVVIQGAGPLGLFGVVIARSL-GAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFI 104 (182)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHT-TBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEE
T ss_pred CCCCCEEEEECCCccchhheeccccc-ccccccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceEE
Confidence 56789999999886 78888888887 55 799999855 6777765322222221 1111 112 48998
Q ss_pred EeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 78 FFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 78 ~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
+-... .+ ..++...+.+++ +|++++....
T Consensus 105 id~vG-----~~---~~~~~a~~~l~~---~G~iv~~G~~ 133 (182)
T d1vj0a2 105 LEATG-----DS---RALLEGSELLRR---GGFYSVAGVA 133 (182)
T ss_dssp EECSS-----CT---THHHHHHHHEEE---EEEEEECCCC
T ss_pred eecCC-----ch---hHHHHHHHHhcC---CCEEEEEeec
Confidence 85322 22 457888999999 8999887643
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.82 E-value=0.0028 Score=40.86 Aligned_cols=91 Identities=10% Similarity=0.099 Sum_probs=60.2
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCccc-------CCCcc-EEEeccc
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQF-------IPPSD-AFFFKTV 82 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~-------~~~~D-~v~~~~~ 82 (180)
.+++++|+=+|+|. |..+..+++.. +++++++|.++ .++.+++..-..++..+-.+. ...+| .|++...
T Consensus 25 ~~~g~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~~~~ 103 (166)
T d1llua2 25 ARPGQWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTAVS 103 (166)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEECCSC
T ss_pred CCCCCEEEEeeccccHHHHHHHHHHc-CCccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCccccccccc
Confidence 67888999999887 77777888877 68999999955 677776643333333222111 12334 4443222
Q ss_pred cccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 83 FHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 83 l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
. ..+....+.|++ +|.+++...
T Consensus 104 ------~---~~~~~~~~~l~~---~G~iv~~G~ 125 (166)
T d1llua2 104 ------N---SAFGQAIGMARR---GGTIALVGL 125 (166)
T ss_dssp ------H---HHHHHHHTTEEE---EEEEEECCC
T ss_pred ------c---hHHHHHHHHhcC---CcEEEEEEe
Confidence 1 458888999999 899988753
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=96.82 E-value=0.003 Score=42.02 Aligned_cols=103 Identities=16% Similarity=0.058 Sum_probs=67.1
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEec---CCcc------cCCCccEEEecc
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEG---DMFQ------FIPPSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~---d~~~------~~~~~D~v~~~~ 81 (180)
++++++||-+|||. |..+..+++.....+++++|.++ .++.+++..-...... |..+ ....+|+++-..
T Consensus 23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid~v 102 (195)
T d1kola2 23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAV 102 (195)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECC
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEECc
Confidence 78899999999998 77777788777566899999965 7777776432222221 1111 112589888532
Q ss_pred cc------cc-CChHHHHHHHHHHHHhhccCCCCcEEEEEEeee
Q 030291 82 VF------HF-FDDEDCLKLLKKCREAIASNGERGKVLIIDIVI 118 (180)
Q Consensus 82 ~l------~~-~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~ 118 (180)
.. ++ .......+.++.+.++++| +|.+.+.....
T Consensus 103 G~~~~~~~~~~~~~~~~~~~l~~~~~~~r~---gG~v~~~G~~~ 143 (195)
T d1kola2 103 GFEARGHGHEGAKHEAPATVLNSLMQVTRV---AGKIGIPGLYV 143 (195)
T ss_dssp CTTCBCSSTTGGGSBCTTHHHHHHHHHEEE---EEEEEECSCCC
T ss_pred cccccCCcccceeecCcHHHHHHHHHHHhc---CCEEEEeeecC
Confidence 21 11 1111122679999999999 99999886543
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=96.76 E-value=0.00088 Score=51.58 Aligned_cols=101 Identities=13% Similarity=0.048 Sum_probs=61.3
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHC----C--------------CCeEEEeeCch-hhccCCC-----------CCCeeE
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAF----P--------------GIKCTVLDLPH-AVTDMPQ-----------TDNLKY 62 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~----~--------------~~~~~~~D~~~-~~~~a~~-----------~~~~~~ 62 (180)
...+.+|+|..||+|.+.....+.. . ...++++|+.. +...++- .....+
T Consensus 162 ~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~~ 241 (524)
T d2ar0a1 162 PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAI 241 (524)
T ss_dssp CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSE
T ss_pred CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccccccccchh
Confidence 3556799999999999987665431 1 12578999843 4333321 112234
Q ss_pred EecCCcc----cCCCccEEEeccccc--cCC----------hHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 63 IEGDMFQ----FIPPSDAFFFKTVFH--FFD----------DEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 63 ~~~d~~~----~~~~~D~v~~~~~l~--~~~----------~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
...+... ....||+|+++=-+. ... ...-..++..+.+.|++ ||++.++-+
T Consensus 242 ~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~---gGr~aiIlP 308 (524)
T d2ar0a1 242 RLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHP---GGRAAVVVP 308 (524)
T ss_dssp EESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred hhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccc---cCcEEEEEe
Confidence 4444433 234699999863221 000 01112589999999999 898888765
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=96.66 E-value=0.0077 Score=39.17 Aligned_cols=97 Identities=8% Similarity=-0.071 Sum_probs=61.3
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEe---cCCc-c------cCCCccEEEec
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIE---GDMF-Q------FIPPSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~---~d~~-~------~~~~~D~v~~~ 80 (180)
.+++++||=+|||. |..+..+++.....+++++|.++ .++.+++..-..++. .|.. . ....+|+++-.
T Consensus 25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~ 104 (174)
T d1p0fa2 25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVEC 104 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEEc
Confidence 78899999999987 56666677766456899999955 788887644333332 2211 1 11248888764
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeC
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVID 119 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~ 119 (180)
-.. . ..+......+++ ++|.+++.....+
T Consensus 105 ~g~-----~---~~~~~~~~~~~~--~~G~~v~vG~~~~ 133 (174)
T d1p0fa2 105 AGR-----I---ETMMNALQSTYC--GSGVTVVLGLASP 133 (174)
T ss_dssp SCC-----H---HHHHHHHHTBCT--TTCEEEECCCCCT
T ss_pred CCC-----c---hHHHHHHHHHHH--hcCceEEEEEecC
Confidence 332 2 456667766655 0478888765433
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.66 E-value=0.0062 Score=39.67 Aligned_cols=93 Identities=11% Similarity=0.023 Sum_probs=64.6
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcc----------cCCCccEEEec
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQ----------FIPPSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~----------~~~~~D~v~~~ 80 (180)
.+++++|+=+|||. |..+..+++...-.+++..|.++ .++.+++..-..++.....+ ....+|+++-.
T Consensus 26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~ 105 (174)
T d1e3ia2 26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDC 105 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEES
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEe
Confidence 67889999999998 88888888887444788999865 77777764333333221111 11258988763
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCC-cEEEEEEe
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGER-GKVLIIDI 116 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~-G~~~~~~~ 116 (180)
.- .+ ..+.+..+.+++ + |.+++...
T Consensus 106 ~G-----~~---~~~~~a~~~~~~---g~G~~v~vG~ 131 (174)
T d1e3ia2 106 AG-----TA---QTLKAAVDCTVL---GWGSCTVVGA 131 (174)
T ss_dssp SC-----CH---HHHHHHHHTBCT---TTCEEEECCC
T ss_pred cc-----cc---hHHHHHHHHhhc---CCeEEEecCC
Confidence 32 22 668999999998 7 88888764
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.57 E-value=0.011 Score=41.72 Aligned_cols=67 Identities=12% Similarity=0.087 Sum_probs=49.5
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHH-CCCCeEEEeeCch-hhccCCC------CCCeeEEecCCccc------CCCccEEE
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEA-FPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQF------IPPSDAFF 78 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~-~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~------~~~~D~v~ 78 (180)
..++.+|||+.+|.|.-+..+++. .+..+++++|.+. .+...++ ..++.+...|.... ...||.|+
T Consensus 92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL 171 (293)
T d2b9ea1 92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 171 (293)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEEe
Confidence 456889999999999988888766 4567899999954 4544442 46788888887541 13599998
Q ss_pred e
Q 030291 79 F 79 (180)
Q Consensus 79 ~ 79 (180)
+
T Consensus 172 ~ 172 (293)
T d2b9ea1 172 L 172 (293)
T ss_dssp E
T ss_pred e
Confidence 6
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=96.42 E-value=0.01 Score=38.16 Aligned_cols=82 Identities=13% Similarity=0.058 Sum_probs=56.4
Q ss_pred eEEEeCCcc-c-HHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcc-cCCCccEEEeccccccCChHHHHH
Q 030291 18 SMVDVGGGT-G-AFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQ-FIPPSDAFFFKTVFHFFDDEDCLK 93 (180)
Q Consensus 18 ~iLdiG~G~-G-~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~-~~~~~D~v~~~~~l~~~~~~~~~~ 93 (180)
+|+=||||. | .+++.|.+..+..+++++|.+. .++.+++...+.....+... .....|+|+.. .+......
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila-----~p~~~~~~ 77 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLS-----SPVRTFRE 77 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEEC-----SCHHHHHH
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhcccccccccc-----CCchhhhh
Confidence 477789987 4 4677777777678899999955 77777665444433333322 33468998873 44455567
Q ss_pred HHHHHHHhhcc
Q 030291 94 LLKKCREAIAS 104 (180)
Q Consensus 94 ~l~~~~~~L~p 104 (180)
+++++.+.+++
T Consensus 78 vl~~l~~~~~~ 88 (171)
T d2g5ca2 78 IAKKLSYILSE 88 (171)
T ss_dssp HHHHHHHHSCT
T ss_pred hhhhhhccccc
Confidence 89999999988
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.41 E-value=0.018 Score=37.14 Aligned_cols=93 Identities=10% Similarity=0.019 Sum_probs=62.2
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCc--c------cCCCccEEEeccc
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMF--Q------FIPPSDAFFFKTV 82 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~--~------~~~~~D~v~~~~~ 82 (180)
.+++++||=+|+|. |..+..+++......++++|.++ .++.+++.....++..+-. + ....+|+|+-...
T Consensus 30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g 109 (172)
T d1h2ba2 30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVG 109 (172)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSC
T ss_pred cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecC
Confidence 56788999999887 56666777765456788999854 6777765433334433221 1 1124888876443
Q ss_pred cccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 83 FHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 83 l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
- . ..++...+.+++ +|.+++...
T Consensus 110 ~-----~---~~~~~a~~~l~~---~G~iv~~G~ 132 (172)
T d1h2ba2 110 S-----Q---ATVDYTPYLLGR---MGRLIIVGY 132 (172)
T ss_dssp C-----H---HHHHHGGGGEEE---EEEEEECCC
T ss_pred c-----c---hHHHHHHHHHhC---CCEEEEEeC
Confidence 2 2 458889999999 999998764
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.27 E-value=0.016 Score=37.42 Aligned_cols=90 Identities=17% Similarity=0.146 Sum_probs=59.7
Q ss_pred ccCCCeEEEeCC--cccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEec---CCcc------cCCCccEEEec
Q 030291 13 FQGLRSMVDVGG--GTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEG---DMFQ------FIPPSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~--G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~---d~~~------~~~~~D~v~~~ 80 (180)
++++++||-.|+ |.|..+..+++.. ++++++++.++ ..+.+++..--.++.. |+.+ ....+|+|+..
T Consensus 26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~d~ 104 (174)
T d1yb5a2 26 VKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEM 104 (174)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEES
T ss_pred CCCCCEEEEEecccccccccccccccc-CcccccccccccccccccccCcccccccccccHHHHhhhhhccCCceEEeec
Confidence 678899999996 4477888888877 78898888744 5666655322222221 2211 11249998864
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
.. . ..++...++++| +|.++...
T Consensus 105 ~g-------~--~~~~~~~~~l~~---~G~iv~~G 127 (174)
T d1yb5a2 105 LA-------N--VNLSKDLSLLSH---GGRVIVVG 127 (174)
T ss_dssp CH-------H--HHHHHHHHHEEE---EEEEEECC
T ss_pred cc-------H--HHHHHHHhccCC---CCEEEEEe
Confidence 22 1 458888899999 89988864
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.19 E-value=0.0067 Score=39.47 Aligned_cols=94 Identities=11% Similarity=0.000 Sum_probs=62.5
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecC---Ccc----c-CC-CccEEEecc
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGD---MFQ----F-IP-PSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d---~~~----~-~~-~~D~v~~~~ 81 (180)
.+++++||=+|||. |..+..+++...-.+++++|.++ .++.+++..-..++... ..+ . .+ .+|+|+-.-
T Consensus 25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~ 104 (174)
T d1jqba2 25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAG 104 (174)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECS
T ss_pred CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEcc
Confidence 67888999999987 88888888876334799999955 67777653222222211 111 0 11 499887643
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
.- + ..++...+.++| +|.+++....
T Consensus 105 g~-----~---~~~~~a~~~~~~---~G~iv~~G~~ 129 (174)
T d1jqba2 105 GG-----S---ETLSQAVKMVKP---GGIISNINYH 129 (174)
T ss_dssp SC-----T---THHHHHHHHEEE---EEEEEECCCC
T ss_pred CC-----H---HHHHHHHHHHhc---CCEEEEEeec
Confidence 32 2 457888899999 8999987643
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.14 E-value=0.021 Score=36.38 Aligned_cols=92 Identities=12% Similarity=0.107 Sum_probs=57.5
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcc-------cCCCccEEEecccc
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQ-------FIPPSDAFFFKTVF 83 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~-------~~~~~D~v~~~~~l 83 (180)
.+++++||=.|+|+ |..+..+++.. +++++++|.++ -++.+++..-..+....-.+ ..+..|.++....
T Consensus 25 ~~~g~~vlv~G~G~iG~~a~~~a~~~-g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~- 102 (168)
T d1rjwa2 25 AKPGEWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAV- 102 (168)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSC-
T ss_pred CCCCCEEEEeecccchhhhhHHHhcC-CCeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeecC-
Confidence 67889999999888 66666677765 67899999855 66666653222222111111 0123444443222
Q ss_pred ccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 84 HFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
. . ..+....+.++| +|.+++...
T Consensus 103 ----~-~--~~~~~a~~~l~~---~G~i~~~g~ 125 (168)
T d1rjwa2 103 ----S-K--PAFQSAYNSIRR---GGACVLVGL 125 (168)
T ss_dssp ----C-H--HHHHHHHHHEEE---EEEEEECCC
T ss_pred ----C-H--HHHHHHHHHhcc---CCceEeccc
Confidence 1 1 558899999999 899888754
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=95.93 E-value=0.016 Score=37.06 Aligned_cols=84 Identities=12% Similarity=0.115 Sum_probs=55.1
Q ss_pred eEEEeCCcc--cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcccCCCccEEEeccccccCChHHHHHH
Q 030291 18 SMVDVGGGT--GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCLKL 94 (180)
Q Consensus 18 ~iLdiG~G~--G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~~~~~~~ 94 (180)
+|.=||+|. +.++..|.+. +.+++++|.++ .++.+++...+.....+. +.....|+|+. .+|.....++
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~--g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~-~~~~~~DiIil-----avp~~~~~~v 73 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVERQLVDEAGQDL-SLLQTAKIIFL-----CTPIQLILPT 73 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTTSCSEEESCG-GGGTTCSEEEE-----CSCHHHHHHH
T ss_pred EEEEEeecHHHHHHHHHHHHC--CCEEEEEECCchHHHHHHHhhccceeeeec-ccccccccccc-----cCcHhhhhhh
Confidence 456678874 4456666665 66799999854 666665544333333333 45567999886 3355666688
Q ss_pred HHHHHHhhccCCCCcEEEE
Q 030291 95 LKKCREAIASNGERGKVLI 113 (180)
Q Consensus 95 l~~~~~~L~p~~~~G~~~~ 113 (180)
++++...+++ +.+++
T Consensus 74 l~~l~~~l~~----~~iv~ 88 (165)
T d2f1ka2 74 LEKLIPHLSP----TAIVT 88 (165)
T ss_dssp HHHHGGGSCT----TCEEE
T ss_pred hhhhhhhccc----cccee
Confidence 9999999988 55554
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.81 E-value=0.0096 Score=38.33 Aligned_cols=95 Identities=23% Similarity=0.262 Sum_probs=61.2
Q ss_pred ccCCCeEEEeCC-c-ccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCccc--------CC-CccEEEec
Q 030291 13 FQGLRSMVDVGG-G-TGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQF--------IP-PSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~-G-~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~--------~~-~~D~v~~~ 80 (180)
.+++++||=+|| | .|..+..+++.....+++++|.++ .++.+++..--..+..+-.+. .+ .+|+++-.
T Consensus 25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid~ 104 (170)
T d1jvba2 25 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDL 104 (170)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEES
T ss_pred CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhhcc
Confidence 778899999996 3 466777777766456899999854 666665522112222222111 12 49988874
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeee
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVI 118 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~ 118 (180)
..- . ..++...++++| +|.+++.....
T Consensus 105 ~g~-----~---~~~~~a~~~l~~---~G~iv~~G~~~ 131 (170)
T d1jvba2 105 NNS-----E---KTLSVYPKALAK---QGKYVMVGLFG 131 (170)
T ss_dssp CCC-----H---HHHTTGGGGEEE---EEEEEECCSSC
T ss_pred ccc-----c---hHHHhhhhhccc---CCEEEEecccc
Confidence 332 2 557888899999 89998876443
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=95.56 E-value=0.083 Score=33.86 Aligned_cols=93 Identities=11% Similarity=-0.048 Sum_probs=58.3
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEec-CCcc---------cCCCccEEEec
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEG-DMFQ---------FIPPSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~-d~~~---------~~~~~D~v~~~ 80 (180)
.+++++||=+|+|. |..+..+++.....+++++|.++ ..+.+++......+.. +..+ ....+|+++-.
T Consensus 26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid~ 105 (176)
T d2jhfa2 26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEV 105 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEEec
Confidence 78889999999876 44666667777667999999855 6666665333332221 1111 11259998875
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
.... ..++.....+++ +|..++...
T Consensus 106 ~G~~--------~~~~~a~~~~~~---~~g~~~~~~ 130 (176)
T d2jhfa2 106 IGRL--------DTMVTALSCCQE---AYGVSVIVG 130 (176)
T ss_dssp SCCH--------HHHHHHHHHBCT---TTCEEEECS
T ss_pred CCch--------hHHHHHHHHHhc---CCcceEEec
Confidence 4432 446777778887 655555443
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=95.54 E-value=0.0027 Score=43.93 Aligned_cols=65 Identities=18% Similarity=0.378 Sum_probs=48.2
Q ss_pred CeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-h---hcc----CCC--------CCCeeEEecCCcccC----CCccE
Q 030291 17 RSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-A---VTD----MPQ--------TDNLKYIEGDMFQFI----PPSDA 76 (180)
Q Consensus 17 ~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~---~~~----a~~--------~~~~~~~~~d~~~~~----~~~D~ 76 (180)
.+|||.-||.|..+..++.. +++++++|-+. + ++. +.. ..|++++++|..+.+ +.||+
T Consensus 90 ~~VlD~TaGlG~Da~vlA~~--G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~Dv 167 (250)
T d2oyra1 90 PDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV 167 (250)
T ss_dssp CCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSE
T ss_pred CEEEECCCcccHHHHHHHhC--CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCCE
Confidence 48999999999999999988 67899999754 2 222 111 248999999986532 35999
Q ss_pred EEecccc
Q 030291 77 FFFKTVF 83 (180)
Q Consensus 77 v~~~~~l 83 (180)
|+.-=++
T Consensus 168 IYlDPMF 174 (250)
T d2oyra1 168 VYLDPMF 174 (250)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9985555
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.39 E-value=0.052 Score=35.08 Aligned_cols=96 Identities=9% Similarity=-0.026 Sum_probs=58.9
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEe---cCCcc-------cCCCccEEEec
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIE---GDMFQ-------FIPPSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~---~d~~~-------~~~~~D~v~~~ 80 (180)
.+++++|+=+|+|. |..+..+++.....+++++|.++ .++.+++..-..++. .|... ....+|+++-.
T Consensus 27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~ 106 (176)
T d1d1ta2 27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEV 106 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEEC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEEe
Confidence 67889999999987 56677777777557899999955 888887632222222 12110 11258887764
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeee
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVI 118 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~ 118 (180)
..- . ..+......+.+ .+|.+++.....
T Consensus 107 ~g~-----~---~~~~~a~~~~~~--~~G~~v~vG~~~ 134 (176)
T d1d1ta2 107 IGH-----L---ETMIDALASCHM--NYGTSVVVGVPP 134 (176)
T ss_dssp SCC-----H---HHHHHHHTTSCT--TTCEEEECSCCC
T ss_pred CCc-----h---HHHHHHHHHhhc--CCeEEEEEEccc
Confidence 332 2 334454445544 058888876543
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.14 E-value=0.092 Score=33.53 Aligned_cols=92 Identities=12% Similarity=-0.009 Sum_probs=57.5
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCC-cc---------cCCCccEEEec
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDM-FQ---------FIPPSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~-~~---------~~~~~D~v~~~ 80 (180)
++++++||=.|||. |.++..+++......++++|.++ ..+.+++..-..++..+- .+ ....+|+|+-.
T Consensus 26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vid~ 105 (176)
T d2fzwa2 26 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFEC 105 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEeeec
Confidence 78899999888774 45666667766446788888855 677776522222222111 01 11258998874
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
-. .. ..++.+...+++ ||.+++..
T Consensus 106 ~G-----~~---~~~~~~~~~~~~---g~~~~~v~ 129 (176)
T d2fzwa2 106 IG-----NV---KVMRAALEACHK---GWGVSVVV 129 (176)
T ss_dssp SC-----CH---HHHHHHHHTBCT---TTCEEEEC
T ss_pred CC-----CH---HHHHHHHHhhcC---CceeEEEE
Confidence 33 22 567888899998 77766553
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=94.59 E-value=0.063 Score=34.48 Aligned_cols=92 Identities=10% Similarity=0.042 Sum_probs=59.2
Q ss_pred ccCCCeEEEeCCcc--cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEe---cCCccc-----CC-CccEEEec
Q 030291 13 FQGLRSMVDVGGGT--GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIE---GDMFQF-----IP-PSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~G~--G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~---~d~~~~-----~~-~~D~v~~~ 80 (180)
++++++||=.|++. |..+..+++.. ++++++++.++ ..+.+++.+--..+. .|+.+. .+ .+|+|+-.
T Consensus 26 l~~g~~Vlv~ga~g~vG~~~iqlak~~-Ga~Vi~~~~s~~k~~~~~~lGa~~vi~~~~~d~~~~v~~~t~g~g~d~v~d~ 104 (179)
T d1qora2 26 IKPDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDS 104 (179)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEEC
T ss_pred CCCCCEEEEEccccccchHHHHHHHHh-CCeEeecccchHHHHHHHhcCCeEEEECCCCCHHHHHHHHhCCCCeEEEEeC
Confidence 67888999886664 67777888776 78999999865 566666522222222 222211 12 48887763
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
.. . +.+....+.+++ +|++++....
T Consensus 105 ~g-----~----~~~~~~~~~l~~---~G~~v~~g~~ 129 (179)
T d1qora2 105 VG-----R----DTWERSLDCLQR---RGLMVSFGNS 129 (179)
T ss_dssp SC-----G----GGHHHHHHTEEE---EEEEEECCCT
T ss_pred cc-----H----HHHHHHHHHHhc---CCeeeecccc
Confidence 33 1 237788899999 8888775543
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.41 E-value=0.088 Score=33.85 Aligned_cols=90 Identities=10% Similarity=0.043 Sum_probs=56.8
Q ss_pred ccCCCeEEEeCC--cccHHHHHHHHHCCCCeEEEeeCc-hhhccCCCCCCeeEEe-c--CCccc------CCCccEEEec
Q 030291 13 FQGLRSMVDVGG--GTGAFARIISEAFPGIKCTVLDLP-HAVTDMPQTDNLKYIE-G--DMFQF------IPPSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~--G~G~~~~~l~~~~~~~~~~~~D~~-~~~~~a~~~~~~~~~~-~--d~~~~------~~~~D~v~~~ 80 (180)
++++++||=.|+ |.|.++..+++.. ++++++++.+ +..+.+++..--..+. . |+.+. ...+|+|+..
T Consensus 23 ~~~g~~VlI~ga~g~vG~~~iqla~~~-g~~vi~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d~v~d~ 101 (183)
T d1pqwa_ 23 LSPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNS 101 (183)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEEC
T ss_pred CCCCCEEEEECCCCCcccccchhhccc-cccceeeecccccccccccccccccccCCccCHHHHHHHHhCCCCEEEEEec
Confidence 677889998773 3477788888776 7788877763 3556666532222222 1 11111 1259999874
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
-. . +.++.+.++|++ +|.++...
T Consensus 102 ~g-----~----~~~~~~~~~l~~---~G~~v~~G 124 (183)
T d1pqwa_ 102 LA-----G----EAIQRGVQILAP---GGRFIELG 124 (183)
T ss_dssp CC-----T----HHHHHHHHTEEE---EEEEEECS
T ss_pred cc-----c----hHHHHHHHHhcC---CCEEEEEc
Confidence 33 2 347778899999 88888864
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=94.18 E-value=0.012 Score=38.02 Aligned_cols=92 Identities=13% Similarity=0.200 Sum_probs=61.7
Q ss_pred CCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCC--CCCeeEEecCCcc---cCCCccEEEeccccccCC
Q 030291 15 GLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQ--TDNLKYIEGDMFQ---FIPPSDAFFFKTVFHFFD 87 (180)
Q Consensus 15 ~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~--~~~~~~~~~d~~~---~~~~~D~v~~~~~l~~~~ 87 (180)
++.+|+=||+|. |..+...+... ++.++.+|.+. .+++.+. ..+++....+-.. .....|+||..-.+---.
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~l-GA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~~ 109 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRR 109 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSS
T ss_pred CCcEEEEECCChHHHHHHHHHhhC-CCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCcc
Confidence 468899999998 77777777777 89999999954 6665554 3445554443311 345799999866543333
Q ss_pred hHHHHHHHHHHHHhhccCCCCcEEEE
Q 030291 88 DEDCLKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 88 ~~~~~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
.+. -+-+++.+.+|| |-+++
T Consensus 110 aP~--lIt~~mv~~Mk~----GSVIV 129 (168)
T d1pjca1 110 API--LVPASLVEQMRT----GSVIV 129 (168)
T ss_dssp CCC--CBCHHHHTTSCT----TCEEE
T ss_pred cCe--eecHHHHhhcCC----CcEEE
Confidence 343 235678889999 55555
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=94.06 E-value=0.35 Score=30.64 Aligned_cols=91 Identities=9% Similarity=-0.043 Sum_probs=56.2
Q ss_pred ccCCCeEEEeCCccc-HHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcc----------cCCCccEEEec
Q 030291 13 FQGLRSMVDVGGGTG-AFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQ----------FIPPSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G-~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~----------~~~~~D~v~~~ 80 (180)
.+++++|+=+|+|.+ ..+..++...-...++++|.++ .++.+++..-..++..+-.+ ....+|+++-.
T Consensus 26 ~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~G~d~vid~ 105 (175)
T d1cdoa2 26 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLEC 105 (175)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEEC
T ss_pred CCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhccCCcceeeee
Confidence 788999999999884 4555566666566899999855 67777764333333221101 01248888764
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
..- . ..+......+++ +|.+++.
T Consensus 106 ~G~-----~---~~~~~a~~~~~~---g~~~~~~ 128 (175)
T d1cdoa2 106 VGN-----V---GVMRNALESCLK---GWGVSVL 128 (175)
T ss_dssp SCC-----H---HHHHHHHHTBCT---TTCEEEE
T ss_pred cCC-----H---HHHHHHHHHhhC---CCcceeE
Confidence 432 2 446677777776 5555543
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=93.92 E-value=0.032 Score=40.56 Aligned_cols=38 Identities=11% Similarity=0.314 Sum_probs=28.7
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHC-------CCCeEEEeeCchhh
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAF-------PGIKCTVLDLPHAV 51 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~-------~~~~~~~~D~~~~~ 51 (180)
++.-.|+|+|+|+|.++..++... ...++..+|.++.+
T Consensus 78 ~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L 122 (365)
T d1zkda1 78 PQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVL 122 (365)
T ss_dssp CSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHH
T ss_pred CccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhH
Confidence 345689999999999998876653 34568899986633
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=93.62 E-value=0.11 Score=30.03 Aligned_cols=69 Identities=16% Similarity=0.271 Sum_probs=46.9
Q ss_pred ccCCCeEEEeC-CcccHHH--HHHHHHCCCCeEEEeeC--chhhccCCCCCCeeEEecCCcccCCCccEEEeccccc
Q 030291 13 FQGLRSMVDVG-GGTGAFA--RIISEAFPGIKCTVLDL--PHAVTDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVFH 84 (180)
Q Consensus 13 ~~~~~~iLdiG-~G~G~~~--~~l~~~~~~~~~~~~D~--~~~~~~a~~~~~~~~~~~d~~~~~~~~D~v~~~~~l~ 84 (180)
+...++|.=|| ||+|..+ ..|.+. +..+++.|. ++.....++ ..+.+..+...+..+..|+|+.+..+-
T Consensus 5 ~~~~~~ihfiGigG~GMs~LA~~L~~~--G~~VsGSD~~~~~~~~~L~~-~Gi~v~~g~~~~~i~~~d~vV~S~AI~ 78 (96)
T d1p3da1 5 MRRVQQIHFIGIGGAGMSGIAEILLNE--GYQISGSDIADGVVTQRLAQ-AGAKIYIGHAEEHIEGASVVVVSSAIK 78 (96)
T ss_dssp CTTCCEEEEETTTSTTHHHHHHHHHHH--TCEEEEEESCCSHHHHHHHH-TTCEEEESCCGGGGTTCSEEEECTTSC
T ss_pred chhCCEEEEEEECHHHHHHHHHHHHhC--CCEEEEEeCCCChhhhHHHH-CCCeEEECCccccCCCCCEEEECCCcC
Confidence 56778888888 6667544 455566 778999998 334444443 356666665545667899999887764
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.67 E-value=0.22 Score=32.09 Aligned_cols=95 Identities=9% Similarity=-0.037 Sum_probs=58.4
Q ss_pred ccCCCeEEEeCCcc--cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEe--cCCcc-----cCCCccEEEeccc
Q 030291 13 FQGLRSMVDVGGGT--GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIE--GDMFQ-----FIPPSDAFFFKTV 82 (180)
Q Consensus 13 ~~~~~~iLdiG~G~--G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~--~d~~~-----~~~~~D~v~~~~~ 82 (180)
.+++++||=-|++. |.++..+++.. ++++++...++ ..+.+++..--..+. .+..+ ....+|+|+-.-.
T Consensus 29 ~~~g~~VLI~gaaGGVG~~aiQlak~~-Ga~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~vg 107 (176)
T d1xa0a2 29 TPERGPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVG 107 (176)
T ss_dssp CGGGCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECST
T ss_pred CCCCCEEEEEeccchHHHHHHHHHHHc-CCceEEecCchHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEcCC
Confidence 45678898888544 66788888887 88888887643 555555421111111 11111 1125998776322
Q ss_pred cccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCC
Q 030291 83 FHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDE 120 (180)
Q Consensus 83 l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~ 120 (180)
. ..+.+..+.|++ +|+++........
T Consensus 108 -----g----~~~~~~l~~l~~---~Griv~~G~~~g~ 133 (176)
T d1xa0a2 108 -----G----RTLATVLSRMRY---GGAVAVSGLTGGA 133 (176)
T ss_dssp -----T----TTHHHHHHTEEE---EEEEEECSCCSSS
T ss_pred -----c----hhHHHHHHHhCC---CceEEEeecccCc
Confidence 2 348889999999 8999987765443
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=91.92 E-value=0.096 Score=33.52 Aligned_cols=90 Identities=10% Similarity=0.050 Sum_probs=55.7
Q ss_pred ccCCCeEEEeCC-cc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCC-CeeEEecCCcc---cCCCccEEEecccccc
Q 030291 13 FQGLRSMVDVGG-GT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTD-NLKYIEGDMFQ---FIPPSDAFFFKTVFHF 85 (180)
Q Consensus 13 ~~~~~~iLdiG~-G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~-~~~~~~~d~~~---~~~~~D~v~~~~~l~~ 85 (180)
++++++||=.|+ |. |..+..+++.. ++++++++.++ ..+.+++.. ...+-..+... ....+|+|+-..
T Consensus 25 ~~~g~~VlI~ga~G~vG~~aiqlak~~-G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~---- 99 (171)
T d1iz0a2 25 ARPGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEVR---- 99 (171)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEECS----
T ss_pred CCCCCEEEEEeccccchhhhhhhhccc-ccccccccccccccccccccccceeeehhhhhhhhhcccccccccccc----
Confidence 678899998884 33 67888888887 78899888744 555555421 11111111111 223599988632
Q ss_pred CChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 86 FDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
.+ .+.+..+.|+| +|.++....
T Consensus 100 -G~-----~~~~~~~~l~~---~G~~v~~G~ 121 (171)
T d1iz0a2 100 -GK-----EVEESLGLLAH---GGRLVYIGA 121 (171)
T ss_dssp -CT-----THHHHHTTEEE---EEEEEEC--
T ss_pred -ch-----hHHHHHHHHhc---CCcEEEEeC
Confidence 11 25677889999 899888654
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=91.12 E-value=0.55 Score=29.95 Aligned_cols=91 Identities=13% Similarity=0.129 Sum_probs=59.8
Q ss_pred ccCCCeEEEeCCcc--cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEec-CC--cc------cCCCccEEEec
Q 030291 13 FQGLRSMVDVGGGT--GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEG-DM--FQ------FIPPSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~G~--G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~-d~--~~------~~~~~D~v~~~ 80 (180)
++++++||=.|++. |..+..+++.. +++++++..++ ..+.+++...-..+.. +. .+ ....+|+|+-.
T Consensus 27 v~~G~~VlV~ga~ggvG~~aiqlak~~-Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~ 105 (182)
T d1v3va2 27 VKGGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDN 105 (182)
T ss_dssp CCSSCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEES
T ss_pred CCCCCEEEEEeCCCchhHHHHHHHHcc-CCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeEEe
Confidence 67889999878755 56777788877 78999998754 5666655332222222 11 11 11259988763
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
- .. +.+++..+.|++ +|.++....
T Consensus 106 v-----G~----~~~~~~~~~l~~---~G~~v~~G~ 129 (182)
T d1v3va2 106 V-----GG----EFLNTVLSQMKD---FGKIAICGA 129 (182)
T ss_dssp S-----CH----HHHHHHGGGEEE---EEEEEECCC
T ss_pred c-----Cc----hhhhhhhhhccC---CCeEEeecc
Confidence 2 22 458899999999 898888653
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=91.00 E-value=0.035 Score=39.02 Aligned_cols=41 Identities=15% Similarity=0.153 Sum_probs=34.3
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCC
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMP 55 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~ 55 (180)
-+++..|||.=||+|..+.+.... +-+++++|+++ ..+.++
T Consensus 248 s~~gdiVlDpF~GSGTT~~AA~~l--gR~~Ig~El~~~y~~~a~ 289 (320)
T d1booa_ 248 TEPDDLVVDIFGGSNTTGLVAERE--SRKWISFEMKPEYVAASA 289 (320)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred ccCCCEEEecCCCCcHHHHHHHHc--CCcEEEEeCCHHHHHHHH
Confidence 367899999999999999988777 77899999964 666654
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=90.48 E-value=0.48 Score=28.38 Aligned_cols=82 Identities=10% Similarity=0.058 Sum_probs=54.0
Q ss_pred CcccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCccc-------CCCccEEEeccccccCChHHHHHHH
Q 030291 24 GGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQF-------IPPSDAFFFKTVFHFFDDEDCLKLL 95 (180)
Q Consensus 24 ~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~-------~~~~D~v~~~~~l~~~~~~~~~~~l 95 (180)
||.|..+..+.+...+..+..+|..+ ..+..+ ..++.++.+|..++ ....+.+++.. +++....++
T Consensus 6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~-~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~-----~~d~~n~~~ 79 (129)
T d2fy8a1 6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVL-RSGANFVHGDPTRVSDLEKANVRGARAVIVNL-----ESDSETIHC 79 (129)
T ss_dssp ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHH-HTTCEEEESCTTSHHHHHHTTCTTCSEEEECC-----SSHHHHHHH
T ss_pred ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHH-hcCccccccccCCHHHHHHhhhhcCcEEEEec-----cchhhhHHH
Confidence 67788999998887777788899843 444443 34688889998652 33677777632 334434445
Q ss_pred HHHHHhhccCCCCcEEEEE
Q 030291 96 KKCREAIASNGERGKVLII 114 (180)
Q Consensus 96 ~~~~~~L~p~~~~G~~~~~ 114 (180)
....+.+.| ...++..
T Consensus 80 ~~~~r~~~~---~~~iia~ 95 (129)
T d2fy8a1 80 ILGIRKIDE---SVRIIAE 95 (129)
T ss_dssp HHHHHHHCS---SSCEEEE
T ss_pred HHHHHHHCC---CceEEEE
Confidence 666677888 5555553
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=90.43 E-value=0.13 Score=33.41 Aligned_cols=92 Identities=11% Similarity=0.087 Sum_probs=56.0
Q ss_pred CCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCC--CCeeEEec-----------------CCcc----
Q 030291 15 GLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQT--DNLKYIEG-----------------DMFQ---- 69 (180)
Q Consensus 15 ~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~--~~~~~~~~-----------------d~~~---- 69 (180)
++.+|+=||+|. |..+...+... ++.++.+|... .+++.++. ..+++... ++..
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~l-GA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~ 106 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRL-GAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE 106 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHc-CCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence 367899999998 67777777776 89999999843 55555431 11111000 0000
Q ss_pred ----cCCCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEE
Q 030291 70 ----FIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 70 ----~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
.....|+|+..-.+---..+. -+=+++.+.+|| |-+++
T Consensus 107 ~l~~~l~~aDlVI~talipG~~aP~--lit~~mv~~Mk~----GSVIV 148 (183)
T d1l7da1 107 AVLKELVKTDIAITTALIPGKPAPV--LITEEMVTKMKP----GSVII 148 (183)
T ss_dssp HHHHHHTTCSEEEECCCCTTSCCCC--CSCHHHHTTSCT----TCEEE
T ss_pred HHHHHHHhhhhheeeeecCCcccce--eehHHHHHhcCC----CcEEE
Confidence 134699999866554333343 235678899999 55554
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=88.81 E-value=0.49 Score=29.95 Aligned_cols=81 Identities=14% Similarity=0.231 Sum_probs=46.6
Q ss_pred CeEEEeCCcc-cH-HHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCee------EEecCCcccCCCccEEEec
Q 030291 17 RSMVDVGGGT-GA-FARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLK------YIEGDMFQFIPPSDAFFFK 80 (180)
Q Consensus 17 ~~iLdiG~G~-G~-~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~------~~~~d~~~~~~~~D~v~~~ 80 (180)
.+|.=||+|. |. ++..|.+. +..++.+|..+ .++..++ ..... ....|..+..+..|+|+..
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~ 79 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALK--GQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIV 79 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEEC
T ss_pred CEEEEECccHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEE
Confidence 4677788887 33 33334444 67899999843 4444332 11111 1112222234579998873
Q ss_pred cccccCChHHHHHHHHHHHHhhcc
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIAS 104 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p 104 (180)
.+......++++++..+++
T Consensus 80 -----v~~~~~~~~~~~i~~~l~~ 98 (184)
T d1bg6a2 80 -----VPAIHHASIAANIASYISE 98 (184)
T ss_dssp -----SCGGGHHHHHHHHGGGCCT
T ss_pred -----EchhHHHHHHHHhhhccCC
Confidence 2344445889999999998
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=87.83 E-value=0.11 Score=35.70 Aligned_cols=40 Identities=18% Similarity=0.173 Sum_probs=33.5
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCC
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMP 55 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~ 55 (180)
.++..|||.=||+|..+.+..+. +-+++++|+++ ..+.++
T Consensus 206 ~~gdiVLDpF~GSGTT~~Aa~~l--gR~~ig~El~~~y~~~a~ 246 (279)
T d1eg2a_ 206 HPGSTVLDFFAGSGVTARVAIQE--GRNSICTDAAPVFKEYYQ 246 (279)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHH--TCEEEEEESSTHHHHHHH
T ss_pred CCCCEEEecCCCCcHHHHHHHHh--CCeEEEEeCCHHHHHHHH
Confidence 67889999999999999988888 67899999955 655554
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=87.80 E-value=1.7 Score=25.88 Aligned_cols=80 Identities=13% Similarity=0.189 Sum_probs=49.5
Q ss_pred eEEEeCCcccHHHHHHHHHC--CCCeEEEeeCc-hhhccCCCCCCeeEEecCCccc-------CCCccEEEeccccccCC
Q 030291 18 SMVDVGGGTGAFARIISEAF--PGIKCTVLDLP-HAVTDMPQTDNLKYIEGDMFQF-------IPPSDAFFFKTVFHFFD 87 (180)
Q Consensus 18 ~iLdiG~G~G~~~~~l~~~~--~~~~~~~~D~~-~~~~~a~~~~~~~~~~~d~~~~-------~~~~D~v~~~~~l~~~~ 87 (180)
+|+=+|+ |.++..+++.. .+..++.+|.. +.++.+....+..++.+|..++ ....|.+++. .+
T Consensus 2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~-----t~ 74 (132)
T d1lssa_ 2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAV-----TG 74 (132)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEEC-----CS
T ss_pred EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhccc-----CC
Confidence 4555665 55555554432 26789999984 4666554433677889998652 2368888873 23
Q ss_pred hHHHHHHHHHHHHhhcc
Q 030291 88 DEDCLKLLKKCREAIAS 104 (180)
Q Consensus 88 ~~~~~~~l~~~~~~L~p 104 (180)
+++...+.....+.+.+
T Consensus 75 ~d~~N~~~~~~~k~~~~ 91 (132)
T d1lssa_ 75 KEEVNLMSSLLAKSYGI 91 (132)
T ss_dssp CHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHcCC
Confidence 33434456666677777
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=87.10 E-value=0.78 Score=28.40 Aligned_cols=88 Identities=11% Similarity=0.181 Sum_probs=48.6
Q ss_pred eEEEeCCcc-cH-HHHHHHHHCCCCeEEEeeCch-hhccCCC---CCCe--eEEecCCcccCCCccEEEeccccccCChH
Q 030291 18 SMVDVGGGT-GA-FARIISEAFPGIKCTVLDLPH-AVTDMPQ---TDNL--KYIEGDMFQFIPPSDAFFFKTVFHFFDDE 89 (180)
Q Consensus 18 ~iLdiG~G~-G~-~~~~l~~~~~~~~~~~~D~~~-~~~~a~~---~~~~--~~~~~d~~~~~~~~D~v~~~~~l~~~~~~ 89 (180)
+|+=||+|. |. ++..|++. +..++.++..+ ....... .... .....+..+....+|+|+..-- ..
T Consensus 2 kI~IiGaG~iG~~~a~~L~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vk-----a~ 74 (167)
T d1ks9a2 2 KITVLGCGALGQLWLTALCKQ--GHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLK-----AW 74 (167)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSC-----GG
T ss_pred EEEEECcCHHHHHHHHHHHHC--CCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeec-----cc
Confidence 677889887 44 45555555 66788887633 2222111 1111 1111222123347999887433 22
Q ss_pred HHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 90 DCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 90 ~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
.....++.+...+++ +..++...
T Consensus 75 ~~~~~~~~l~~~~~~---~~~Iv~~q 97 (167)
T d1ks9a2 75 QVSDAVKSLASTLPV---TTPILLIH 97 (167)
T ss_dssp GHHHHHHHHHTTSCT---TSCEEEEC
T ss_pred chHHHHHhhccccCc---ccEEeecc
Confidence 334779999999988 56555543
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=85.70 E-value=1.1 Score=28.33 Aligned_cols=93 Identities=15% Similarity=0.066 Sum_probs=56.2
Q ss_pred ccCCCeEEEeCC--cccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-CCCeeEEecCCc-c---c--CCCccEEEeccc
Q 030291 13 FQGLRSMVDVGG--GTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-TDNLKYIEGDMF-Q---F--IPPSDAFFFKTV 82 (180)
Q Consensus 13 ~~~~~~iLdiG~--G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-~~~~~~~~~d~~-~---~--~~~~D~v~~~~~ 82 (180)
.+++.+||=-|+ |-|.++..+++.. +++++++.-++ ..+.+++ .....+...|.. + . ...+|+|+-.
T Consensus 21 ~~~~~~VLV~gaaGgVG~~avQlAk~~-Ga~Viat~~s~~k~~~~~~lGad~vi~~~~~~~~~~~~~~~~gvd~vid~-- 97 (167)
T d1tt7a2 21 SPEKGSVLVTGATGGVGGIAVSMLNKR-GYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDP-- 97 (167)
T ss_dssp CGGGCCEEEESTTSHHHHHHHHHHHHH-TCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEES--
T ss_pred CCCCCEEEEeCCcchHHHHHHHHHHHc-CCceEEEecCHHHHHHHHhhcccceEeccchhchhhhcccCCCceEEEec--
Confidence 344556776663 4467888888886 78899888754 5555554 111111111111 1 1 1248887653
Q ss_pred cccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeee
Q 030291 83 FHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVI 118 (180)
Q Consensus 83 l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~ 118 (180)
+.. ..+.+..+.|++ +|.++.+....
T Consensus 98 ---vgg----~~~~~~~~~l~~---~G~iv~~G~~~ 123 (167)
T d1tt7a2 98 ---VGG----KQLASLLSKIQY---GGSVAVSGLTG 123 (167)
T ss_dssp ---CCT----HHHHHHHTTEEE---EEEEEECCCSS
T ss_pred ---CcH----HHHHHHHHHhcc---CceEEEeeccC
Confidence 222 458899999999 89998876544
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=84.33 E-value=1.3 Score=28.16 Aligned_cols=91 Identities=14% Similarity=0.126 Sum_probs=54.3
Q ss_pred cCCCeEEEeCC--cccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecC---CcccC--CCccEEEecccccc
Q 030291 14 QGLRSMVDVGG--GTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGD---MFQFI--PPSDAFFFKTVFHF 85 (180)
Q Consensus 14 ~~~~~iLdiG~--G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d---~~~~~--~~~D~v~~~~~l~~ 85 (180)
++..+||=.|+ |.|..+..+++.. +++++++.-++ ..+.+++..--.++.-+ ..... ..+|.++ ..
T Consensus 30 ~~~~~vlV~gasGGVG~~aiQlAk~~-Ga~Via~~~~~~k~~~~~~lGad~vi~~~~~~~~~~l~~~~~~~vv-----D~ 103 (177)
T d1o89a2 30 PQDGEIVVTGASGGVGSTAVALLHKL-GYQVVAVSGRESTHEYLKSLGASRVLPRDEFAESRPLEKQVWAGAI-----DT 103 (177)
T ss_dssp GGGCEEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGGHHHHHHHTEEEEEEGGGSSSCCSSCCCCEEEEE-----ES
T ss_pred CCCCcEEEEEccccchHHHHHHHHHc-CCCeEEEecchhHHHHHHhhccccccccccHHHHHHHHhhcCCeeE-----EE
Confidence 34456776653 3467888888887 88898887643 55555542212222211 11112 2377764 23
Q ss_pred CChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 86 FDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
+.. ..+.+..+.|++ +|+++.+...
T Consensus 104 Vgg----~~~~~~l~~l~~---~Griv~~G~~ 128 (177)
T d1o89a2 104 VGD----KVLAKVLAQMNY---GGCVAACGLA 128 (177)
T ss_dssp SCH----HHHHHHHHTEEE---EEEEEECCCT
T ss_pred cch----HHHHHHHHHhcc---ccceEeeccc
Confidence 333 458899999999 8999987644
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=84.13 E-value=0.99 Score=25.31 Aligned_cols=64 Identities=13% Similarity=0.023 Sum_probs=39.2
Q ss_pred eEEEeC-CcccHHHHH--HHHHCCCCeEEEeeCc--hhhccCCCCCCeeEEecCCcccCCCccEEEeccccc
Q 030291 18 SMVDVG-GGTGAFARI--ISEAFPGIKCTVLDLP--HAVTDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVFH 84 (180)
Q Consensus 18 ~iLdiG-~G~G~~~~~--l~~~~~~~~~~~~D~~--~~~~~a~~~~~~~~~~~d~~~~~~~~D~v~~~~~l~ 84 (180)
+|-=|| ||.|..+.+ |.+. +..+++.|.. +..++.+ ...+++..+.-.+.....|+|+.+..+.
T Consensus 3 ~ihfiGIgG~GMs~LA~~L~~~--G~~VsGSD~~~~~~t~~L~-~~Gi~i~~gh~~~~i~~~d~vV~SsAI~ 71 (89)
T d1j6ua1 3 KIHFVGIGGIGMSAVALHEFSN--GNDVYGSNIEETERTAYLR-KLGIPIFVPHSADNWYDPDLVIKTPAVR 71 (89)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT--TCEEEEECSSCCHHHHHHH-HTTCCEESSCCTTSCCCCSEEEECTTCC
T ss_pred EEEEEeECHHHHHHHHHHHHhC--CCeEEEEeCCCChhHHHHH-HCCCeEEeeecccccCCCCEEEEecCcC
Confidence 344456 666765443 4444 8899999983 3555433 3345555543334556799999988774
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.94 E-value=2.8 Score=29.03 Aligned_cols=66 Identities=9% Similarity=0.125 Sum_probs=43.4
Q ss_pred CCeEEEeCCcccHHHHHHHHHCCCCe-EEEeeCch-hhccCCC-CCCeeEEecCCccc----C--CCccEEEecc
Q 030291 16 LRSMVDVGGGTGAFARIISEAFPGIK-CTVLDLPH-AVTDMPQ-TDNLKYIEGDMFQF----I--PPSDAFFFKT 81 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~~~~~~-~~~~D~~~-~~~~a~~-~~~~~~~~~d~~~~----~--~~~D~v~~~~ 81 (180)
+-+++|+-||.|.++..+....-..+ +.++|..+ +.+-.+. .+...+++.|+.+. . +..|+++...
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~~~~~~~~di~~~~~~~~~~~~~Dll~ggp 76 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSP 76 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECC
T ss_pred CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCCCCCcccCchhhCCHhHcCCCCccEEEeec
Confidence 45799999999999998877742323 46788844 4333332 45566777887541 1 2589888643
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=83.75 E-value=2.9 Score=25.46 Aligned_cols=86 Identities=20% Similarity=0.240 Sum_probs=48.3
Q ss_pred eEEEeCCcccHHHHHHHHHC--CCCeEEEeeC-ch-hhccCCC--CCCeeEEecCCccc-------CCCccEEEeccccc
Q 030291 18 SMVDVGGGTGAFARIISEAF--PGIKCTVLDL-PH-AVTDMPQ--TDNLKYIEGDMFQF-------IPPSDAFFFKTVFH 84 (180)
Q Consensus 18 ~iLdiG~G~G~~~~~l~~~~--~~~~~~~~D~-~~-~~~~a~~--~~~~~~~~~d~~~~-------~~~~D~v~~~~~l~ 84 (180)
.|+=+|+ |..+..+++.. .+..++.+|. ++ ......+ ..++.++.+|..++ ....|.+++..
T Consensus 5 HiII~G~--g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~--- 79 (153)
T d1id1a_ 5 HFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALS--- 79 (153)
T ss_dssp CEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECS---
T ss_pred EEEEECC--CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEcc---
Confidence 4555555 44555444331 2567888887 33 2222222 46788999998662 33688887743
Q ss_pred cCChHHHHHHHHHHHHhhccCCCCcEEEE
Q 030291 85 FFDDEDCLKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 85 ~~~~~~~~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
+++.....+....+-+.| .-.++.
T Consensus 80 --~~d~~n~~~~~~~r~~~~---~~~iia 103 (153)
T d1id1a_ 80 --DNDADNAFVVLSAKDMSS---DVKTVL 103 (153)
T ss_dssp --SCHHHHHHHHHHHHHHTS---SSCEEE
T ss_pred --ccHHHHHHHHHHHHHhCC---CCceEE
Confidence 233333445555666777 555554
|
| >d1vpta_ c.66.1.25 (A:) Polymerase regulatory subunit VP39 {Vaccinia virus [TaxId: 10245]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: Polymerase regulatory subunit VP39 species: Vaccinia virus [TaxId: 10245]
Probab=81.95 E-value=5.5 Score=27.34 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=35.8
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCC----CeEEEeeCchhhccCCCCCCeeEEec
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPG----IKCTVLDLPHAVTDMPQTDNLKYIEG 65 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~----~~~~~~D~~~~~~~a~~~~~~~~~~~ 65 (180)
...+..|+=+|+|.|.....|.+.++. .++..+|+..--....+..+++..+.
T Consensus 58 ~~~~~~VVYiGSApG~Hi~~L~~lf~~~~~~ikw~LiDp~~~d~~L~~l~nv~l~~~ 114 (297)
T d1vpta_ 58 ILDGATVVYIGSAPGTHIRYLRDHFYNLGVIIKWMLIDGRHHDPILNGLRDVTLVTR 114 (297)
T ss_dssp CSTTCEEEEESCSSCHHHHHHHHHHHHTTCCCEEEEEESSCCCGGGTTCTTEEEEEC
T ss_pred CCCCcEEEEeccCCCchHHHHHHHHHhhCCceEEEEECCCccChhhccccceEeehh
Confidence 445679999999999999999888753 47999997331122223345554443
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=80.87 E-value=3.5 Score=23.72 Aligned_cols=85 Identities=26% Similarity=0.248 Sum_probs=50.6
Q ss_pred CCCeEEEeCCcccHHH--HHHHHHCCCCeEEEeeC--chhhccCCCCCCeeEEecCCcc-cCCCccEEEeccccccCChH
Q 030291 15 GLRSMVDVGGGTGAFA--RIISEAFPGIKCTVLDL--PHAVTDMPQTDNLKYIEGDMFQ-FIPPSDAFFFKTVFHFFDDE 89 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~--~~l~~~~~~~~~~~~D~--~~~~~~a~~~~~~~~~~~d~~~-~~~~~D~v~~~~~l~~~~~~ 89 (180)
.+++||=+|+|.-... ..+++. ++.++.++. ++.+....+..++++....+.+ .+..+++|+.... +.
T Consensus 11 ~~k~vlVvG~G~va~~ka~~ll~~--ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~dl~~~~lv~~at~-----d~ 83 (113)
T d1pjqa1 11 RDRDCLIVGGGDVAERKARLLLEA--GARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATD-----DD 83 (113)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHT--TBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCS-----CH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeccCChHHHHHHhcCCceeeccCCCHHHhCCCcEEeecCC-----CH
Confidence 4678999999884332 223344 778888876 3322222235678888877744 4557888887433 22
Q ss_pred HHHHHHHHHHHhhccCCCCcEEE
Q 030291 90 DCLKLLKKCREAIASNGERGKVL 112 (180)
Q Consensus 90 ~~~~~l~~~~~~L~p~~~~G~~~ 112 (180)
.+-.++.+..++ .|.++
T Consensus 84 ---~~n~~i~~~a~~---~~ilV 100 (113)
T d1pjqa1 84 ---TVNQRVSDAAES---RRIFC 100 (113)
T ss_dssp ---HHHHHHHHHHHH---TTCEE
T ss_pred ---HHHHHHHHHHHH---cCCEE
Confidence 334456666666 45444
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=80.37 E-value=1.7 Score=29.92 Aligned_cols=62 Identities=15% Similarity=0.133 Sum_probs=42.2
Q ss_pred eEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcc----cCCCccEEEec
Q 030291 18 SMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQ----FIPPSDAFFFK 80 (180)
Q Consensus 18 ~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~----~~~~~D~v~~~ 80 (180)
+|+|+=||.|.+...+.+.. --.+.++|..+ +.+..+.........+|+.+ ..+..|+++..
T Consensus 2 k~~~lF~G~Gg~~~gl~~aG-~~~~~a~e~d~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~dll~~g 68 (324)
T d1dcta_ 2 NLISLFSGAGGLDLGFQKAG-FRIICANEYDKSIWKTYESNHSAKLIKGDISKISSDEFPKCDGIIGG 68 (324)
T ss_dssp EEEEESCSSCHHHHHHHHHT-CEEEEEEECCHHHHHHHHHHCCSEEEESCTTTSCGGGSCCCSEEEEC
T ss_pred eEEEeCcCcCHHHHHHHHCC-CEEEEEEeCCHHHHHHHHHHCCCCCccCChhhCCHhHcccccEEeec
Confidence 69999999999999988873 22345888854 44333332234567788855 35679998864
|