Citrus Sinensis ID: 030297

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
MNIVGTLCVYAAICKHEGFPLLFPGTKETWEGFSEYSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSERVRLEEIMKGKESVWEEIVRENQLQPTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEHGFLGFRNSKNSFVAWIGRLKSHRIVP
ccHHHHHHHHHHHHHHHcccccccccHHHcccccccccHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHccccccccccccccccccHHHHHcccHHHHHHHHHHHccccccccccccccHHHHHHHccccccccHHHHHHHccccccccHHHHHHHHHHHHHccccc
ccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcHHHHHHHHHHHHHccHHHHcccEEccccccEcHHHHHHHHHHHccccccccccccccccccHHHHHHccHHHHHHHHHHcccccccHHHHHcccHHcccccccHHHcccHHHHHHcccccccccHHHHHHHHHHHHHccccc
MNIVGTLCVYAAICkhegfpllfpgtketwegfseysdadLIAEQEIWaavdpnarneafnctngdvfKWKHLWKVLAEQFEienygfgdekgsERVRLEEIMKGKESVWEEIVREnqlqptklneVAVWSYADMVMNVGAGYsvsmnkskehgflgfrnskNSFVAWIGRlkshrivp
MNIVGTLCVYAAICKHEGFPLLFPGTKETWEGFSEYSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFeienygfgdekgserVRLEEIMKGKESVWeeivrenqlqptklNEVAVWSYADMVMNVGAGYSVSMNKSKEHGFLGFRNSKNSFVAWIGRLKSHRIVP
MNIVGTLCVYAAICKHEGFPLLFPGTKETWEGFSEYSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSERVRLEEIMKGKESVWEEIVRENQLQPTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEHGFLGFRNSKNSFVAWIGRLKSHRIVP
**IVGTLCVYAAICKHEGFPLLFPGTKETWEGFSEYSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEIENYGFGDEK****VRLEEIMKGKESVWEEIVRENQLQPTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEHGFLGFRNSKNSFVAWIGRLK******
MNIVGTLCVYAAICKHEGFPLLFPGTKETWEGFSEYSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEIENY*************EEIMKGKESVWEEIVRENQLQPTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEHGFLGFRNSKNSFVAWIGRLKSHRIVP
MNIVGTLCVYAAICKHEGFPLLFPGTKETWEGFSEYSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSERVRLEEIMKGKESVWEEIVRENQLQPTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEHGFLGFRNSKNSFVAWIGRLKSHRIVP
MNIVGTLCVYAAICKHEGFPLLFPGTKETWEGFSEYSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSERVRLEEIMKGKESVWEEIVRENQLQPTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEHGFLGFRNSKNSFVAWIGRLKSHRIVP
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiii
ooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MNIVGTLCVYAAICKHEGFPLLFPGTKETWEGFSEYSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSERVRLEEIMKGKESVWEEIVRENQLQPTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEHGFLGFRNSKNSFVAWIGRLKSHRIVP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query179 2.2.26 [Sep-21-2011]
Q9STX2388 3-oxo-Delta(4,5)-steroid yes no 0.977 0.451 0.692 5e-67
Q6PQJ9389 3-oxo-Delta(4,5)-steroid N/A no 0.977 0.449 0.625 9e-61
O74913405 Uncharacterized protein C yes no 0.983 0.434 0.246 3e-13
>sp|Q9STX2|VEP1_ARATH 3-oxo-Delta(4,5)-steroid 5-beta-reductase OS=Arabidopsis thaliana GN=VEP1 PE=1 SV=1 Back     alignment and function desciption
 Score =  253 bits (645), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 124/179 (69%), Positives = 145/179 (81%), Gaps = 4/179 (2%)

Query: 1   MNIVGTLCVYAAICKHEGFPLLFPGTKETWEGFSEYSDADLIAEQEIWAAVDPNARNEAF 60
           MNIVGTLCVYAAICKHEG PLLFPG+K+ WEGF   SDADLIAEQ+IWAAVDP A+NEAF
Sbjct: 214 MNIVGTLCVYAAICKHEGSPLLFPGSKKAWEGFMTASDADLIAEQQIWAAVDPYAKNEAF 273

Query: 61  NCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSERVRLEEIMKGKESVWEEIVRENQLQ 120
           NC N D+FKWKHLWK+LAEQF IE YGF + K    + L E+MKGKE VWEE+V+ENQLQ
Sbjct: 274 NCNNADIFKWKHLWKILAEQFGIEEYGFEEGK---NLGLVEMMKGKERVWEEMVKENQLQ 330

Query: 121 PTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEHGFLGFRNSKNSFVAWIGRLKSHRIVP 179
             KL EV VW +AD+++ V  G   SMNKSKE+GFLGFRNS NSF++WI + K+ +IVP
Sbjct: 331 EKKLEEVGVWWFADVILGV-EGMIDSMNKSKEYGFLGFRNSNNSFISWIDKYKAFKIVP 388
Involved in vascular strand development. Catalyzes the stereospecific conversion of progesterone to 5-beta-pregnane-3,20-dione. Can use progesterone, testosterone, 21-acetyl cortexone, 2-cyclohexenone, but-1-en-3-one, ethyl acrylate, ethylmethacrylate, cortisone and canarigenone as substrates, lower activity with 3-methyl-2-cyclohexenone and 3,5,5-trimethyl-2-cyclohexenone as substrate, and no activity with canarigenin, canarigenin digitoxoside and pregnenolone. May be involved in the formation of 5-beta phytoecdysteroids.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 3EC: .EC: 1EC: .EC: 3
>sp|Q6PQJ9|5BPOR_DIGLA 3-oxo-Delta(4,5)-steroid 5-beta-reductase OS=Digitalis lanata PE=1 SV=1 Back     alignment and function description
>sp|O74913|YJ72_SCHPO Uncharacterized protein C757.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC757.02c PE=4 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query179
255538116 390 conserved hypothetical protein [Ricinus 0.983 0.451 0.703 6e-69
374257403 389 progesterone 5-beta-reductase [Erysimum 0.977 0.449 0.698 9e-67
295881582 389 progesterone 5-beta-reductase [Erysimum 0.977 0.449 0.698 9e-67
295881578 389 progesterone 5-beta-reductase [Erysimum 0.977 0.449 0.698 1e-66
295881576 389 progesterone 5-beta-reductase [Erysimum 0.977 0.449 0.698 2e-66
297803694 388 hypothetical protein ARALYDRAFT_914168 [ 0.977 0.451 0.698 2e-66
295881580 389 progesterone 5-beta-reductase [Erysimum 0.977 0.449 0.698 2e-66
428676533 388 putative progesterone 5-beta-reductase [ 0.977 0.451 0.709 1e-65
346540262 390 progesterone 5beta-reductase [Erysimum a 0.977 0.448 0.692 1e-65
346540268 389 progesterone 5beta-reductase [Erysimum c 0.977 0.449 0.687 1e-65
>gi|255538116|ref|XP_002510123.1| conserved hypothetical protein [Ricinus communis] gi|223550824|gb|EEF52310.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  265 bits (677), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 126/179 (70%), Positives = 148/179 (82%), Gaps = 3/179 (1%)

Query: 1   MNIVGTLCVYAAICKHEGFPLLFPGTKETWEGFSEYSDADLIAEQEIWAAVDPNARNEAF 60
           MNI+GTLCVYA ICKHEG PLLFPGTK  W  +S  SDADLIAE +IWA+VDP A++EAF
Sbjct: 215 MNIIGTLCVYATICKHEGLPLLFPGTKAAWNCYSVASDADLIAEHQIWASVDPYAKDEAF 274

Query: 61  NCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSERVRLEEIMKGKESVWEEIVRENQLQ 120
           NC NGDVFKWKH WKVLAEQF IE YGF  E+G +R+ L E+MKGKE+VWEEIV ENQLQ
Sbjct: 275 NCNNGDVFKWKHFWKVLAEQFGIEEYGF--EEGEKRLSLVEMMKGKEAVWEEIVSENQLQ 332

Query: 121 PTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEHGFLGFRNSKNSFVAWIGRLKSHRIVP 179
           PTKL+EVAVW + D+++  G     SMNKSKEHGFLGFRNSKNSF +WI ++K+++IVP
Sbjct: 333 PTKLDEVAVWWFVDLMLG-GEAVISSMNKSKEHGFLGFRNSKNSFASWIDKMKAYKIVP 390

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|374257403|gb|AEZ01593.1| progesterone 5-beta-reductase [Erysimum odoratum] Back     alignment and taxonomy information
>gi|295881582|gb|ADG56545.1| progesterone 5-beta-reductase [Erysimum rhaeticum] Back     alignment and taxonomy information
>gi|295881578|gb|ADG56543.1| progesterone 5-beta-reductase [Erysimum x marshallii] Back     alignment and taxonomy information
>gi|295881576|gb|ADG56542.1| progesterone 5-beta-reductase [Erysimum capitatum var. purshii] Back     alignment and taxonomy information
>gi|297803694|ref|XP_002869731.1| hypothetical protein ARALYDRAFT_914168 [Arabidopsis lyrata subsp. lyrata] gi|297315567|gb|EFH45990.1| hypothetical protein ARALYDRAFT_914168 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|295881580|gb|ADG56544.1| progesterone 5-beta-reductase [Erysimum crepidifolium] Back     alignment and taxonomy information
>gi|428676533|gb|AFZ42258.1| putative progesterone 5-beta-reductase [Nasturtium officinale] Back     alignment and taxonomy information
>gi|346540262|gb|AEO36945.1| progesterone 5beta-reductase [Erysimum albescens] Back     alignment and taxonomy information
>gi|346540268|gb|AEO36948.1| progesterone 5beta-reductase [Erysimum capitatum var. purshii] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query179
TAIR|locus:2135932388 VEP1 "VEIN PATTERNING 1" [Arab 0.977 0.451 0.698 1.2e-65
UNIPROTKB|Q48IK0353 PSPPH_2587 "Aldo-keto reductas 0.972 0.492 0.372 3.8e-30
UNIPROTKB|Q882D3353 PSPTO_2695 "Uncharacterized pr 0.972 0.492 0.355 3.1e-28
UNIPROTKB|Q4K649386 PFL_5207 "Uncharacterized prot 0.966 0.448 0.329 5.2e-26
TAIR|locus:2178793386 AT5G58750 [Arabidopsis thalian 0.977 0.453 0.318 1.9e-21
POMBASE|SPCC757.02c405 SPCC757.02c "epimarase (predic 0.469 0.207 0.345 5.6e-18
ASPGD|ASPL0000051603376 AN9028 [Emericella nidulans (t 1.0 0.476 0.308 1.4e-17
ASPGD|ASPL0000040978437 AN2921 [Emericella nidulans (t 0.441 0.180 0.412 6.9e-14
ASPGD|ASPL0000017248424 AN4177 [Emericella nidulans (t 0.424 0.179 0.371 1e-09
TAIR|locus:2135932 VEP1 "VEIN PATTERNING 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
 Identities = 125/179 (69%), Positives = 147/179 (82%)

Query:     1 MNIVGTLCVYAAICKHEGFPLLFPGTKETWEGFSEYSDADLIAEQEIWAAVDPNARNEAF 60
             MNIVGTLCVYAAICKHEG PLLFPG+K+ WEGF   SDADLIAEQ+IWAAVDP A+NEAF
Sbjct:   214 MNIVGTLCVYAAICKHEGSPLLFPGSKKAWEGFMTASDADLIAEQQIWAAVDPYAKNEAF 273

Query:    61 NCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSERVRLEEIMKGKESVWEEIVRENQLQ 120
             NC N D+FKWKHLWK+LAEQF IE YGF  E+G + + L E+MKGKE VWEE+V+ENQLQ
Sbjct:   274 NCNNADIFKWKHLWKILAEQFGIEEYGF--EEG-KNLGLVEMMKGKERVWEEMVKENQLQ 330

Query:   121 PTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEHGFLGFRNSKNSFVAWIGRLKSHRIVP 179
               KL EV VW +AD+++ V  G   SMNKSKE+GFLGFRNS NSF++WI + K+ +IVP
Sbjct:   331 EKKLEEVGVWWFADVILGV-EGMIDSMNKSKEYGFLGFRNSNNSFISWIDKYKAFKIVP 388
GO:0000166 "nucleotide binding" evidence=IEA
GO:0009611 "response to wounding" evidence=IEP
GO:0010051 "xylem and phloem pattern formation" evidence=IMP
GO:0008202 "steroid metabolic process" evidence=IDA
GO:0035671 "enone reductase activity" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
UNIPROTKB|Q48IK0 PSPPH_2587 "Aldo-keto reductase family protein" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)] Back     alignment and assigned GO terms
UNIPROTKB|Q882D3 PSPTO_2695 "Uncharacterized protein" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)] Back     alignment and assigned GO terms
UNIPROTKB|Q4K649 PFL_5207 "Uncharacterized protein" [Pseudomonas protegens Pf-5 (taxid:220664)] Back     alignment and assigned GO terms
TAIR|locus:2178793 AT5G58750 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
POMBASE|SPCC757.02c SPCC757.02c "epimarase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ASPGD|ASPL0000051603 AN9028 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
ASPGD|ASPL0000040978 AN2921 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
ASPGD|ASPL0000017248 AN4177 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query179
cd08948308 cd08948, 5beta-POR_like_SDR_a, progesterone 5-beta 7e-49
>gnl|CDD|187652 cd08948, 5beta-POR_like_SDR_a, progesterone 5-beta-reductase-like proteins (5beta-POR), atypical (a) SDRs Back     alignment and domain information 
 Score =  160 bits (406), Expect = 7e-49
 Identities = 55/122 (45%), Positives = 69/122 (56%), Gaps = 5/122 (4%)

Query: 1   MNIVGTLCVYAAICKHEGFPLLFPGTKETWEGFSEYSDADLIAEQEIWAAVDPNARNEAF 60
           MN+  TL VYAAIC+  G PL FPG+   W   S+ +DA L+A   IWAA  P A NEAF
Sbjct: 186 MNLALTLAVYAAICRELGAPLRFPGSPAAWNALSDATDARLLARFTIWAATHPEAANEAF 245

Query: 61  NCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSE---RVRLEEIMKGKE--SVWEEIVR 115
           N TNGDVF+WK LW  LAE F +E      E  +        EE+M      + W+E+V 
Sbjct: 246 NVTNGDVFRWKELWPRLAEYFGLEGAPPEPEAEAGADKAPVWEELMADHGLQAAWDELVE 305

Query: 116 EN 117
            +
Sbjct: 306 RH 307

5beta-POR catalyzes the reduction of progesterone to 5beta-pregnane-3,20-dione in Digitalis plants. This subgroup of atypical-extended SDRs, shares the structure of an extended SDR, but has a different glycine-rich nucleotide binding motif (GXXGXXG) and lacks the YXXXK active site motif of classical and extended SDRs. Tyr-179 and Lys 147 are present in the active site, but not in the usual SDR configuration. Given these differences, it has been proposed that this subfamily represents a new SDR class. Other atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 308

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 179
PLN00016378 RNA-binding protein; Provisional 99.13
PRK10217355 dTDP-glucose 4,6-dehydratase; Provisional 99.03
PRK15181348 Vi polysaccharide biosynthesis protein TviC; Provi 98.94
PLN02725306 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas 98.92
PRK10084352 dTDP-glucose 4,6 dehydratase; Provisional 98.91
PLN02653340 GDP-mannose 4,6-dehydratase 98.91
TIGR03466328 HpnA hopanoid-associated sugar epimerase. The sequ 98.9
KOG1430361 consensus C-3 sterol dehydrogenase/3-beta-hydroxys 98.89
PLN02427386 UDP-apiose/xylose synthase 98.85
TIGR01472343 gmd GDP-mannose 4,6-dehydratase. Excluded from thi 98.79
PLN02240352 UDP-glucose 4-epimerase 98.77
PLN02206442 UDP-glucuronate decarboxylase 98.77
PRK11150308 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro 98.77
PRK08125660 bifunctional UDP-glucuronic acid decarboxylase/UDP 98.76
PRK11908347 NAD-dependent epimerase/dehydratase family protein 98.75
PLN02166436 dTDP-glucose 4,6-dehydratase 98.74
PLN02989325 cinnamyl-alcohol dehydrogenase family protein 98.73
PLN02260 668 probable rhamnose biosynthetic enzyme 98.72
TIGR01181317 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This 98.72
PRK10675338 UDP-galactose-4-epimerase; Provisional 98.7
PLN02695370 GDP-D-mannose-3',5'-epimerase 98.69
TIGR02197314 heptose_epim ADP-L-glycero-D-manno-heptose-6-epime 98.68
TIGR01214287 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme 98.64
PLN02214342 cinnamoyl-CoA reductase 98.63
TIGR02622349 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member 98.56
PLN02986322 cinnamyl-alcohol dehydrogenase family protein 98.54
PLN02662322 cinnamyl-alcohol dehydrogenase family protein 98.5
TIGR01179328 galE UDP-glucose-4-epimerase. This enzyme intercon 98.49
TIGR01777292 yfcH conserved hypothetical protein TIGR01777. Thi 98.44
KOG0747331 consensus Putative NAD+-dependent epimerases [Carb 98.43
PLN02572442 UDP-sulfoquinovose synthase 98.39
COG1088340 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope 98.36
PRK05865 854 hypothetical protein; Provisional 98.35
PLN02650351 dihydroflavonol-4-reductase 98.34
CHL00194317 ycf39 Ycf39; Provisional 98.32
COG0451314 WcaG Nucleoside-diphosphate-sugar epimerases [Cell 98.25
PLN00198338 anthocyanidin reductase; Provisional 98.23
PLN02896353 cinnamyl-alcohol dehydrogenase 98.22
PRK07201 657 short chain dehydrogenase; Provisional 98.18
PF01073280 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso 98.06
PRK09987299 dTDP-4-dehydrorhamnose reductase; Provisional 97.8
TIGR01746367 Thioester-redct thioester reductase domain. It has 97.65
COG1087329 GalE UDP-glucose 4-epimerase [Cell envelope biogen 97.57
KOG1502327 consensus Flavonol reductase/cinnamoyl-CoA reducta 97.4
PLN02778298 3,5-epimerase/4-reductase 97.11
PLN02657390 3,8-divinyl protochlorophyllide a 8-vinyl reductas 97.06
PLN02686367 cinnamoyl-CoA reductase 97.0
COG1089345 Gmd GDP-D-mannose dehydratase [Cell envelope bioge 96.97
COG1090297 Predicted nucleoside-diphosphate sugar epimerase [ 96.95
PLN02996491 fatty acyl-CoA reductase 96.91
KOG1431315 consensus GDP-L-fucose synthetase [Carbohydrate tr 96.87
PF04321286 RmlD_sub_bind: RmlD substrate binding domain; Inte 96.86
TIGR03649285 ergot_EASG ergot alkaloid biosynthesis protein, AF 96.63
PF1395062 Epimerase_Csub: UDP-glucose 4-epimerase C-term sub 96.55
PF01370236 Epimerase: NAD dependent epimerase/dehydratase fam 96.49
KOG1429350 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro 96.12
TIGR03589324 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This 96.09
PLN02260668 probable rhamnose biosynthetic enzyme 95.67
TIGR034431389 alpha_am_amid L-aminoadipate-semialdehyde dehydrog 95.47
PLN02503605 fatty acyl-CoA reductase 2 94.93
COG1091281 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo 94.87
KOG1371343 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo 94.5
PLN02583297 cinnamoyl-CoA reductase 93.29
KOG1372376 consensus GDP-mannose 4,6 dehydratase [Carbohydrat 90.86
KOG2865391 consensus NADH:ubiquinone oxidoreductase, NDUFA9/3 84.44
PRK12320 699 hypothetical protein; Provisional 81.65
>PLN00016 RNA-binding protein; Provisional Back     alignment and domain information 
Probab=99.13  E-value=2.3e-10  Score=97.80  Aligned_cols=125  Identities=13%  Similarity=0.116  Sum_probs=94.1

Q ss_pred             hCCCccCCCChhhhccccccCCHHHHHHHHHHHhcCCCCCCCceeccCCCcccHHHHHHHHHHHhcCccCCCCCCCCCcc
Q 030297           17 EGFPLLFPGTKETWEGFSEYSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSER   96 (179)
Q Consensus        17 ~g~pl~FPG~~~~~~~~~~~~~~~~la~~~i~a~~~p~a~geaFNi~dg~~~sw~~lw~~iA~~fG~~~~~p~~~~~~~~   96 (179)
                      .|.|+++||+-..++   ++++++.+|++++.++.++...|+.|||++++.+|+.++...|++.+|.+....       .
T Consensus       230 ~~~~i~~~g~g~~~~---~~i~v~Dva~ai~~~l~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~i~-------~  299 (378)
T PLN00016        230 RGRPVPIPGSGIQLT---QLGHVKDLASMFALVVGNPKAAGQIFNIVSDRAVTFDGMAKACAKAAGFPEEIV-------H  299 (378)
T ss_pred             cCCceeecCCCCeee---ceecHHHHHHHHHHHhcCccccCCEEEecCCCccCHHHHHHHHHHHhCCCCcee-------e
Confidence            477888888766555   889999999999999998877789999999999999999999999999875321       1


Q ss_pred             CCHHHHHhccHHHHHHHHHHhCCC-CCCcccchhhhhhHHhhhccCccccchhhHHHc-CCCCccchHHHHHHHHHHHHh
Q 030297           97 VRLEEIMKGKESVWEEIVRENQLQ-PTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEH-GFLGFRNSKNSFVAWIGRLKS  174 (179)
Q Consensus        97 ~~l~~~~~~~~~~w~~l~~~~gL~-~~~l~~~~~~~f~d~~~~~~~~~~~d~~Kar~~-Gf~~~~dt~e~~~~~~~~~~~  174 (179)
                      ++.... .     +       +.+ ..++             . ..+...|++|+++. ||+|.++..|++.++++||++
T Consensus       300 ~~~~~~-~-----~-------~~~~~~p~-------------~-~~~~~~d~~ka~~~LGw~p~~~l~egl~~~~~~~~~  352 (378)
T PLN00016        300 YDPKAV-G-----F-------GAKKAFPF-------------R-DQHFFASPRKAKEELGWTPKFDLVEDLKDRYELYFG  352 (378)
T ss_pred             cCcccc-C-----c-------cccccccc-------------c-ccccccCHHHHHHhcCCCCCCCHHHHHHHHHHHHHh
Confidence            111000 0     0       000 0010             1 01455799999987 999999999999999999998


Q ss_pred             CCCC
Q 030297          175 HRIV  178 (179)
Q Consensus       175 ~~~i  178 (179)
                      .+-+
T Consensus       353 ~~~~  356 (378)
T PLN00016        353 RGRD  356 (378)
T ss_pred             cCCC
Confidence            8754

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional Back     alignment and domain information
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional Back     alignment and domain information
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase Back     alignment and domain information
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional Back     alignment and domain information
>PLN02653 GDP-mannose 4,6-dehydratase Back     alignment and domain information
>TIGR03466 HpnA hopanoid-associated sugar epimerase Back     alignment and domain information
>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism] Back     alignment and domain information
>PLN02427 UDP-apiose/xylose synthase Back     alignment and domain information
>TIGR01472 gmd GDP-mannose 4,6-dehydratase Back     alignment and domain information
>PLN02240 UDP-glucose 4-epimerase Back     alignment and domain information
>PLN02206 UDP-glucuronate decarboxylase Back     alignment and domain information
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional Back     alignment and domain information
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated Back     alignment and domain information
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional Back     alignment and domain information
>PLN02166 dTDP-glucose 4,6-dehydratase Back     alignment and domain information
>PLN02989 cinnamyl-alcohol dehydrogenase family protein Back     alignment and domain information
>PLN02260 probable rhamnose biosynthetic enzyme Back     alignment and domain information
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase Back     alignment and domain information
>PRK10675 UDP-galactose-4-epimerase; Provisional Back     alignment and domain information
>PLN02695 GDP-D-mannose-3',5'-epimerase Back     alignment and domain information
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase Back     alignment and domain information
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase Back     alignment and domain information
>PLN02214 cinnamoyl-CoA reductase Back     alignment and domain information
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase Back     alignment and domain information
>PLN02986 cinnamyl-alcohol dehydrogenase family protein Back     alignment and domain information
>PLN02662 cinnamyl-alcohol dehydrogenase family protein Back     alignment and domain information
>TIGR01179 galE UDP-glucose-4-epimerase Back     alignment and domain information
>TIGR01777 yfcH conserved hypothetical protein TIGR01777 Back     alignment and domain information
>KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02572 UDP-sulfoquinovose synthase Back     alignment and domain information
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK05865 hypothetical protein; Provisional Back     alignment and domain information
>PLN02650 dihydroflavonol-4-reductase Back     alignment and domain information
>CHL00194 ycf39 Ycf39; Provisional Back     alignment and domain information
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00198 anthocyanidin reductase; Provisional Back     alignment and domain information
>PLN02896 cinnamyl-alcohol dehydrogenase Back     alignment and domain information
>PRK07201 short chain dehydrogenase; Provisional Back     alignment and domain information
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones Back     alignment and domain information
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional Back     alignment and domain information
>TIGR01746 Thioester-redct thioester reductase domain Back     alignment and domain information
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] Back     alignment and domain information
>PLN02778 3,5-epimerase/4-reductase Back     alignment and domain information
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase Back     alignment and domain information
>PLN02686 cinnamoyl-CoA reductase Back     alignment and domain information
>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] Back     alignment and domain information
>PLN02996 fatty acyl-CoA reductase Back     alignment and domain information
>KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 Back     alignment and domain information
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family Back     alignment and domain information
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A Back     alignment and domain information
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor Back     alignment and domain information
>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase Back     alignment and domain information
>PLN02260 probable rhamnose biosynthetic enzyme Back     alignment and domain information
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase Back     alignment and domain information
>PLN02503 fatty acyl-CoA reductase 2 Back     alignment and domain information
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>PLN02583 cinnamoyl-CoA reductase Back     alignment and domain information
>KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion] Back     alignment and domain information
>PRK12320 hypothetical protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query179
2v6f_A364 Structure Of Progesterone 5beta-Reductase From Digi 1e-61
>pdb|2V6F|A Chain A, Structure Of Progesterone 5beta-Reductase From Digitalis Lanata Length = 364 Back     alignment and structure 
Iteration: 1

 Score =  232 bits (591), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 112/179 (62%), Positives = 140/179 (78%), Gaps = 4/179 (2%)
Query: 1   MNIVGTLCVYAAICKHEGFPLLFPGTKETWEGFSEYSDADLIAEQEIWAAVDPNARNEAF 60
           MN+VGTLCVYAAICKHEG  L F G K  W+G+S+ SDADLIAE  IWAAVDP A+NEAF
Sbjct: 190 MNLVGTLCVYAAICKHEGKVLRFTGCKAAWDGYSDCSDADLIAEHHIWAAVDPYAKNEAF 249
Query: 61  NCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSERVRLEEIMKGKESVWEEIVRENQLQ 120
           N +NGDVFKWKH WKVLAEQF +E    G+ +    ++L+++MKGKE VWEEIVREN L 
Sbjct: 250 NVSNGDVFKWKHFWKVLAEQFGVE---CGEYEEGVDLKLQDLMKGKEPVWEEIVRENGLT 306
Query: 121 PTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEHGFLGFRNSKNSFVAWIGRLKSHRIVP 179
           PTKL +V +W + D+++     +  SMNKSKEHGFLGFRNSKN+F++WI + K+++IVP
Sbjct: 307 PTKLKDVGIWWFGDVILG-NECFLDSMNKSKEHGFLGFRNSKNAFISWIDKAKAYKIVP 364

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query179
2v6g_A364 Progesterone 5-beta-reductase; tyrosine-dependent 3e-56
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* Length = 364 Back     alignment and structure
 Score =  179 bits (456), Expect = 3e-56
 Identities = 111/179 (62%), Positives = 139/179 (77%), Gaps = 4/179 (2%)

Query: 1   MNIVGTLCVYAAICKHEGFPLLFPGTKETWEGFSEYSDADLIAEQEIWAAVDPNARNEAF 60
           MN+VGTLCVYAAICKHEG  L F G K  W+G+S+ SDADLIAE  IWAAVDP A+NEAF
Sbjct: 190 MNLVGTLCVYAAICKHEGKVLRFTGCKAAWDGYSDCSDADLIAEHHIWAAVDPYAKNEAF 249

Query: 61  NCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSERVRLEEIMKGKESVWEEIVRENQLQ 120
           N +NGDVFKWKH WKVLAEQF +E   + +      ++L+++MKGKE VWEEIVREN L 
Sbjct: 250 NVSNGDVFKWKHFWKVLAEQFGVECGEYEEG---VDLKLQDLMKGKEPVWEEIVRENGLT 306

Query: 121 PTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEHGFLGFRNSKNSFVAWIGRLKSHRIVP 179
           PTKL +V +W + D+++     +  SMNKSKEHGFLGFRNSKN+F++WI + K+++IVP
Sbjct: 307 PTKLKDVGIWWFGDVILG-NECFLDSMNKSKEHGFLGFRNSKNAFISWIDKAKAYKIVP 364

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query179
2v6g_A364 Progesterone 5-beta-reductase; tyrosine-dependent 99.86
3ehe_A313 UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, 99.23
3m2p_A311 UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J 99.22
3ruf_A351 WBGU; rossmann fold, UDP-hexose 4-epimerase, isome 99.17
4egb_A346 DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce 99.13
4b4o_A298 Epimerase family protein SDR39U1; isomerase; HET: 99.1
3slg_A372 PBGP3 protein; structural genomics, seattle struct 99.09
4b8w_A319 GDP-L-fucose synthase; oxidoreductase; HET: NAP GD 99.08
1e6u_A321 GDP-fucose synthetase; epimerase/reductase, SDR, R 99.08
3ko8_A312 NAD-dependent epimerase/dehydratase; isomerase, UD 99.07
3enk_A341 UDP-glucose 4-epimerase; seattle structural genomi 99.07
2x4g_A342 Nucleoside-diphosphate-sugar epimerase; isomerase; 99.06
2q1w_A333 Putative nucleotide sugar epimerase/ dehydratase; 99.05
4id9_A347 Short-chain dehydrogenase/reductase; putative dehy 99.05
2bll_A345 Protein YFBG; decarboxylase, short chain dehydroge 99.03
2p5y_A311 UDP-glucose 4-epimerase; TTHA0591, structural geno 99.02
2q1s_A377 Putative nucleotide sugar epimerase/ dehydratase; 99.02
3vps_A321 TUNA, NAD-dependent epimerase/dehydratase; tunicam 99.0
3sc6_A287 DTDP-4-dehydrorhamnose reductase; RFBD, structural 99.0
1ek6_A348 UDP-galactose 4-epimerase; short-chain dehydrogena 98.99
3ius_A286 Uncharacterized conserved protein; APC63810, silic 98.99
1eq2_A310 ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin 98.98
2x6t_A357 ADP-L-glycero-D-manno-heptose-6-epimerase; isomera 98.96
1sb8_A352 WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN 98.96
3sxp_A362 ADP-L-glycero-D-mannoheptose-6-epimerase; rossman 98.93
3gpi_A286 NAD-dependent epimerase/dehydratase; structural ge 98.92
2c20_A330 UDP-glucose 4-epimerase; carbohydrate metabolism, 98.91
2b69_A343 UDP-glucuronate decarboxylase 1; UDP-glucoronic ac 98.91
2hun_A336 336AA long hypothetical DTDP-glucose 4,6-dehydrat; 98.89
1r6d_A337 TDP-glucose-4,6-dehydratase; rossmann fold, short- 98.87
2pk3_A321 GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor 98.86
2c5a_A379 GDP-mannose-3', 5'-epimerase; short chain dehydrat 98.84
1oc2_A348 DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos 98.84
1gy8_A397 UDP-galactose 4-epimerase; oxidoreductase; HET: NA 98.83
1rpn_A335 GDP-mannose 4,6-dehydratase; short-chain dehydroge 98.82
1kew_A361 RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo 98.79
1z45_A 699 GAL10 bifunctional protein; epimerase, mutarotase, 98.78
2yy7_A312 L-threonine dehydrogenase; thermolabIle, flavobact 98.77
2pzm_A330 Putative nucleotide sugar epimerase/ dehydratase; 98.77
1n2s_A299 DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold 98.77
1orr_A347 CDP-tyvelose-2-epimerase; rossmann fold, short-cha 98.77
1db3_A372 GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya 98.76
1udb_A338 Epimerase, UDP-galactose-4-epimerase; isomerase; H 98.74
1rkx_A357 CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 98.73
1n7h_A381 GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, 98.73
1i24_A404 Sulfolipid biosynthesis protein SQD1; SDR, short-c 98.72
1z7e_A660 Protein aRNA; rossmann fold, OB-like fold, hydrola 98.72
2ydy_A315 Methionine adenosyltransferase 2 subunit beta; oxi 98.72
1vl0_A292 DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s 98.71
1t2a_A375 GDP-mannose 4,6 dehydratase; structural genomics c 98.71
2hrz_A342 AGR_C_4963P, nucleoside-diphosphate-sugar epimeras 98.68
2z1m_A345 GDP-D-mannose dehydratase; short-chain dehydrogena 98.6
3ajr_A317 NDP-sugar epimerase; L-threonine dehydrogenase, L- 98.6
4f6c_A427 AUSA reductase domain protein; thioester reductase 98.56
2rh8_A338 Anthocyanidin reductase; flavonoids, rossmann fold 98.55
4f6l_B508 AUSA reductase domain protein; thioester reductase 98.54
3oh8_A516 Nucleoside-diphosphate sugar epimerase (SULA FAMI; 98.52
2zcu_A286 Uncharacterized oxidoreductase YTFG; alpha-beta sa 98.49
2jl1_A287 Triphenylmethane reductase; oxidoreductase, biorem 98.46
2p4h_X322 Vestitone reductase; NADPH-dependent reductase, is 98.42
2c29_D337 Dihydroflavonol 4-reductase; flavonoids, short deh 98.41
2ggs_A273 273AA long hypothetical DTDP-4-dehydrorhamnose red 98.04
3i6i_A346 Putative leucoanthocyanidin reductase 1; rossmann 97.75
1y1p_A342 ARII, aldehyde reductase II; rossmann fold, short 97.68
4dqv_A478 Probable peptide synthetase NRP (peptide synthase; 97.33
3e48_A289 Putative nucleoside-diphosphate-sugar epimerase; a 97.25
3st7_A369 Capsular polysaccharide synthesis enzyme CAP5F; ro 97.19
1xgk_A352 Nitrogen metabolite repression regulator NMRA; ros 96.73
1qyd_A313 Pinoresinol-lariciresinol reductase; NADPH-depende 96.67
3c1o_A321 Eugenol synthase; phenylpropene, PIP reductase, sh 96.6
1qyc_A308 Phenylcoumaran benzylic ether reductase PT1; NADPH 96.29
2r6j_A318 Eugenol synthase 1; phenylpropene, PIP reductase, 96.26
1xq6_A253 Unknown protein; structural genomics, protein stru 96.24
2gas_A307 Isoflavone reductase; NADPH-dependent reductase, o 96.09
3dhn_A227 NAD-dependent epimerase/dehydratase; reductase, PF 95.76
3nzo_A399 UDP-N-acetylglucosamine 4,6-dehydratase; structura 95.51
3e8x_A236 Putative NAD-dependent epimerase/dehydratase; stru 95.43
3h2s_A224 Putative NADH-flavin reductase; Q03B84, NESG, LCR1 94.87
2wm3_A299 NMRA-like family domain containing protein 1; unkn 94.57
3dqp_A219 Oxidoreductase YLBE; alpha-beta protein., structur 94.38
3ew7_A221 LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend 94.16
2gn4_A344 FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann 93.41
2a35_A215 Hypothetical protein PA4017; alpha-beta-alpha sand 89.55
1hdo_A206 Biliverdin IX beta reductase; foetal metabolism, H 89.12
2bgk_A278 Rhizome secoisolariciresinol dehydrogenase; oxidor 86.49
3ay3_A267 NAD-dependent epimerase/dehydratase; glucuronic ac 84.22
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* Back     alignment and structure
Probab=99.86  E-value=2e-20  Score=155.51  Aligned_cols=170  Identities=65%  Similarity=1.166  Sum_probs=147.2

Q ss_pred             hHHHHHHHHHHHhHhCCCccCCCChhhhccccccCCHHHHHHHHHHHhcCCCCCCCceeccCCCcccHHHHHHHHHHHhc
Q 030297            3 IVGTLCVYAAICKHEGFPLLFPGTKETWEGFSEYSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFE   82 (179)
Q Consensus         3 ~~~~l~iy~s~~r~~g~pl~FPG~~~~~~~~~~~~~~~~la~~~i~a~~~p~a~geaFNi~dg~~~sw~~lw~~iA~~fG   82 (179)
                      ...+..++.++++..|.|+++||+...++...+.++++.+|++++.++.++.+.|+.|||++++.+|+.+++..|++.+|
T Consensus       192 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~v~Dva~a~~~~~~~~~~~g~~~ni~~~~~~s~~e~~~~i~~~~g  271 (364)
T 2v6g_A          192 LVGTLCVYAAICKHEGKVLRFTGCKAAWDGYSDCSDADLIAEHHIWAAVDPYAKNEAFNVSNGDVFKWKHFWKVLAEQFG  271 (364)
T ss_dssp             HHHHHHHHHHHHHHHTCCBCCCSCHHHHHSCBCCEEHHHHHHHHHHHHHCGGGTTEEEEECCSCCBCHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHhcCCceecCCCcccccccCCCCcHHHHHHHHHHHHhCCCCCCceEEecCCCcCCHHHHHHHHHHHhC
Confidence            34556677788777899999889988888888999999999999999998877899999999999999999999999999


Q ss_pred             CccCCC--CCCCCCccCCHHHHHhccHHHHHHHHHHhCCCCCCcccchhhhhhHHhhhccCc-cccchhhHHHcCCCCcc
Q 030297           83 IENYGF--GDEKGSERVRLEEIMKGKESVWEEIVRENQLQPTKLNEVAVWSYADMVMNVGAG-YSVSMNKSKEHGFLGFR  159 (179)
Q Consensus        83 ~~~~~p--~~~~~~~~~~l~~~~~~~~~~w~~l~~~~gL~~~~l~~~~~~~f~d~~~~~~~~-~~~d~~Kar~~Gf~~~~  159 (179)
                      .+....  .     .|..+...+....+.|+.+.++.|+.+..+.+...|.|.+..+.  .+ ..+|.+|+|++||+|.+
T Consensus       272 ~~~~~~~~~-----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~k~~~lG~~p~~  344 (364)
T 2v6g_A          272 VECGEYEEG-----VDLKLQDLMKGKEPVWEEIVRENGLTPTKLKDVGIWWFGDVILG--NECFLDSMNKSKEHGFLGFR  344 (364)
T ss_dssp             CCBCCCCTT-----CCCCHHHHTTTCHHHHHHHHHHTTCCCCCHHHHCCHHHHHHHHT--SCCCCBCCHHHHHTTCCCCC
T ss_pred             CCCCCCCCC-----CCccHHHHHhhhHHHHHHHHHHhCCCccccccccccchhhhccc--cchhhcchHHHHhcCCCCCC
Confidence            886643  3     78888888888889999999999988776655446777776555  16 68999999999999999


Q ss_pred             chHHHHHHHHHHHHhCCCCC
Q 030297          160 NSKNSFVAWIGRLKSHRIVP  179 (179)
Q Consensus       160 dt~e~~~~~~~~~~~~~~iP  179 (179)
                      +..+++.+++++|++.|+||
T Consensus       345 ~~~e~l~~~~~~~~~~g~lp  364 (364)
T 2v6g_A          345 NSKNAFISWIDKAKAYKIVP  364 (364)
T ss_dssp             CHHHHHHHHHHHHHHTTSCC
T ss_pred             CHHHHHHHHHHHHHHcCCCC
Confidence            99999999999999999998
>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 Back     alignment and structure
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} Back     alignment and structure
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* Back     alignment and structure
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} Back     alignment and structure
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} Back     alignment and structure
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} Back     alignment and structure
>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} Back     alignment and structure
>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* Back     alignment and structure
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* Back     alignment and structure
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 Back     alignment and structure
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Back     alignment and structure
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} Back     alignment and structure
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* Back     alignment and structure
>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A Back     alignment and structure
>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* Back     alignment and structure
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* Back     alignment and structure
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} Back     alignment and structure
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 Back     alignment and structure
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* Back     alignment and structure
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} Back     alignment and structure
>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 Back     alignment and structure
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* Back     alignment and structure
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* Back     alignment and structure
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} Back     alignment and structure
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} Back     alignment and structure
>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} Back     alignment and structure
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* Back     alignment and structure
>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} Back     alignment and structure
>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* Back     alignment and structure
>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} Back     alignment and structure
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* Back     alignment and structure
>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* Back     alignment and structure
>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* Back     alignment and structure
>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Back     alignment and structure
>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* Back     alignment and structure
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 Back     alignment and structure
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} Back     alignment and structure
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* Back     alignment and structure
>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* Back     alignment and structure
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 Back     alignment and structure
>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 Back     alignment and structure
>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* Back     alignment and structure
>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* Back     alignment and structure
>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* Back     alignment and structure
>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* Back     alignment and structure
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 Back     alignment and structure
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A Back     alignment and structure
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 Back     alignment and structure
>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 Back     alignment and structure
>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} Back     alignment and structure
>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* Back     alignment and structure
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* Back     alignment and structure
>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} Back     alignment and structure
>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A Back     alignment and structure
>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} Back     alignment and structure
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} Back     alignment and structure
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* Back     alignment and structure
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D Back     alignment and structure
>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} Back     alignment and structure
>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* Back     alignment and structure
>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} Back     alignment and structure
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* Back     alignment and structure
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A Back     alignment and structure
>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} Back     alignment and structure
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} Back     alignment and structure
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A Back     alignment and structure
>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* Back     alignment and structure
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 Back     alignment and structure
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} Back     alignment and structure
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 Back     alignment and structure
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* Back     alignment and structure
>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* Back     alignment and structure
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} Back     alignment and structure
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Back     alignment and structure
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} Back     alignment and structure
>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A Back     alignment and structure
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} Back     alignment and structure
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} Back     alignment and structure
>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* Back     alignment and structure
>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Back     alignment and structure
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* Back     alignment and structure
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* Back     alignment and structure
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query179
d2blla1342 Polymyxin resistance protein ArnA (PrmI) {Escheric 99.16
d1r6da_322 dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces 99.01
d1kewa_361 dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus 98.9
d2b69a1312 UDP-glucuronate decarboxylase 1 {Human (Homo sapie 98.84
d1sb8a_341 UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo 98.83
d1ek6a_346 Uridine diphosphogalactose-4-epimerase (UDP-galact 98.8
d1rpna_321 GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos 98.79
d1orra_338 CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 98.73
d1db3a_357 GDP-mannose 4,6-dehydratase {Escherichia coli [Tax 98.66
d2c5aa1363 GDP-mannose-3', 5'-epimerase {Thale cress (Arabido 98.64
d1oc2a_346 dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus 98.62
d1udca_338 Uridine diphosphogalactose-4-epimerase (UDP-galact 98.54
d1z45a2347 Uridine diphosphogalactose-4-epimerase (UDP-galact 98.45
d1n7ha_339 GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop 98.3
d1gy8a_383 Uridine diphosphogalactose-4-epimerase (UDP-galact 98.28
d1vl0a_281 DTDP-4-dehydrorhamnose reductase RfbD {Clostridium 98.28
d1rkxa_356 CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc 98.21
d1i24a_393 Sulfolipid biosynthesis protein SQD1 {Thale cress 98.21
d1eq2a_307 ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric 98.18
d1e6ua_315 GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( 98.01
d1t2aa_347 GDP-mannose 4,6-dehydratase {Human (Homo sapiens) 97.92
d1y1pa1342 Aldehyde reductase II {Sporobolomyces salmonicolor 97.61
d1n2sa_298 dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S 97.31
d1qyda_312 Pinoresinol-lariciresinol reductase {Giant arborvi 97.22
d1qyca_307 Phenylcoumaran benzylic ether reductase {Loblolly 97.03
d2q46a1252 Hypothetical protein At5g02240 (T7H20_290) {Thale 96.06
d1xgka_350 Negative transcriptional regulator NmrA {Aspergill 89.61
>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=99.16  E-value=9.8e-12  Score=100.41  Aligned_cols=128  Identities=11%  Similarity=-0.018  Sum_probs=89.8

Q ss_pred             hCCCccCCCChhhhccccccCCHHHHHHHHHHHhcCC--CCCCCceeccCCC-cccHHHHHHHHHHHhcCccCCCCCCCC
Q 030297           17 EGFPLLFPGTKETWEGFSEYSDADLIAEQEIWAAVDP--NARNEAFNCTNGD-VFKWKHLWKVLAEQFEIENYGFGDEKG   93 (179)
Q Consensus        17 ~g~pl~FPG~~~~~~~~~~~~~~~~la~~~i~a~~~p--~a~geaFNi~dg~-~~sw~~lw~~iA~~fG~~~~~p~~~~~   93 (179)
                      .|.|+.++|+-...+   +.++++.+|++++.++.++  ++.|++|||++|+ .+|+.++...|++.+|.......    
T Consensus       206 ~g~~~~~~~~g~~~r---~~i~v~D~~~a~~~~~~~~~~~~~g~~~Nig~~~~~~t~~~l~~~i~~~~~~~~~~~~----  278 (342)
T d2blla1         206 EGSPIKLIDGGKQKR---CFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHH----  278 (342)
T ss_dssp             HTCCEEEGGGSCCEE---ECEEHHHHHHHHHHHHHCGGGTTTTEEEEECCTTSEEEHHHHHHHHHHHHHTCTTGGG----
T ss_pred             hCCCccccCCCCeee---eecccccccceeeeehhhccccCCCeEEEEecccchhHHHHHHHHHHHHhCCCccccc----
Confidence            478888878777666   8999999999999999975  4668999998765 58999999999999997765432    


Q ss_pred             CccCCHHHHHhccHHHHHHHHHHhCCCCCCcccchhhhhhHHhhhccCccccchhhHHHc-CCCCccchHHHHHHHHHHH
Q 030297           94 SERVRLEEIMKGKESVWEEIVRENQLQPTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEH-GFLGFRNSKNSFVAWIGRL  172 (179)
Q Consensus        94 ~~~~~l~~~~~~~~~~w~~l~~~~gL~~~~l~~~~~~~f~d~~~~~~~~~~~d~~Kar~~-Gf~~~~dt~e~~~~~~~~~  172 (179)
                       .|......... ...+                      .............|.+|+|+. ||+|.++.+|+++++++||
T Consensus       279 -~~~~~~~~~~~-~~~~----------------------~~~~~~~~~~~~~d~~k~~~~lgw~P~~sleegl~~ti~~y  334 (342)
T d2blla1         279 -FPPFAGFRVVE-SSSY----------------------YGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFF  334 (342)
T ss_dssp             -SCCCCCEEEC-----------------------------------CCCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_pred             -cCcccccceec-cccc----------------------cccccccccccccCHHHHHHHHCCCcCCCHHHHHHHHHHHH
Confidence             11111000000 0000                      011011001456799999986 9999999999999999999


Q ss_pred             HhC
Q 030297          173 KSH  175 (179)
Q Consensus       173 ~~~  175 (179)
                      ++-
T Consensus       335 ~~~  337 (342)
T d2blla1         335 LRT  337 (342)
T ss_dssp             HHH
T ss_pred             HhC
Confidence            763
>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} Back     information, alignment and structure
>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Back     information, alignment and structure
>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} Back     information, alignment and structure
>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Back     information, alignment and structure
>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} Back     information, alignment and structure
>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Back     information, alignment and structure
>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} Back     information, alignment and structure
>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} Back     information, alignment and structure
>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} Back     information, alignment and structure