Citrus Sinensis ID: 030298

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
MEPVKEEEEVYSWREVNLPALSPTAAAEPELERETGERRRGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKEAGDASLI
cccccccccccccEEEccccccccccccccccccccccccccEEEEEEcccHHHHHHHHHHHHHHcccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEccHHHHHHHHHHHccccEEEEcccccccccccccccHHHHHHHHcccccEEEEccccccccccc
cccccccHHEcccEEEEcccccccccccccccccccccccccEEEEEEcccHHHHHHHHHHHHHHcccccEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHccccEEEEEccccHHHHHHHHccHHHHHHHccccccEEEEccccccccccc
mepvkeeeevyswrevnlpalsptaaaepeleretgerrrgRDILiavdhgpnskhAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQgsvgeyclhhcktapiivvpgkeagdasli
mepvkeeeevyswrevnlpalsptaaaepeleretgerrrgRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKtapiivvpgkeagdasli
MEPVKEEEEVYSWREVNLPALSPTAAAepeleretgerrrgrDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKEAGDASLI
********************************************LIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP**********
***************V***************************ILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDM**GLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPII*************
**********YSWREVNLPALSPT**************RRGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK********
*****EEEEVYSWREVNLPALSPTAAA************RGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK********
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MEPVKEEEEVYSWREVNLPALSPTAAAEPELERETGERRRGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKEAGDASLI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query179 2.2.26 [Sep-21-2011]
Q8LGG8175 Universal stress protein no no 0.340 0.348 0.387 1e-06
P72745108 Universal stress protein N/A no 0.497 0.824 0.28 9e-05
>sp|Q8LGG8|USPAL_ARATH Universal stress protein A-like protein OS=Arabidopsis thaliana GN=At3g01520 PE=1 SV=2 Back     alignment and function desciption
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 1/62 (1%)

Query: 107 VRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPII 166
           V  +A I  GD   VIC+E +R++P  +V+GSRG G  Q V  G+V  +C+ H +  P++
Sbjct: 101 VGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAE-CPVM 159

Query: 167 VV 168
            +
Sbjct: 160 TI 161

Arabidopsis thaliana (taxid: 3702)
>sp|P72745|Y1101_SYNY3 Universal stress protein Slr1101 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1101 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query179
449462226177 PREDICTED: uncharacterized protein LOC10 0.938 0.949 0.775 2e-73
351725895177 uncharacterized protein LOC100306377 [Gl 0.988 1.0 0.765 1e-68
45720184178 putative universal stress protein [Cicer 0.994 1.0 0.776 2e-68
255543701180 conserved hypothetical protein [Ricinus 0.988 0.983 0.776 2e-68
388522921178 unknown [Lotus japonicus] 0.994 1.0 0.759 6e-68
357467311178 Universal stress protein A-like protein 0.994 1.0 0.754 8e-68
224080359177 predicted protein [Populus trichocarpa] 0.988 1.0 0.776 1e-67
195626300186 pathogen induced protein 2-4 [Zea mays] 1.0 0.962 0.723 2e-66
325975910177 universal stress protein [Salvia miltior 0.966 0.977 0.75 2e-66
284433778199 response to dessication RD2 [Jatropha cu 0.988 0.889 0.759 3e-66
>gi|449462226|ref|XP_004148842.1| PREDICTED: uncharacterized protein LOC101210790 [Cucumis sativus] gi|449515579|ref|XP_004164826.1| PREDICTED: uncharacterized LOC101210790 [Cucumis sativus] Back     alignment and taxonomy information
 Score =  280 bits (716), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 131/169 (77%), Positives = 152/169 (89%), Gaps = 1/169 (0%)

Query: 11  YSWREVNLPALSPTAAAEPELERETGERRRGRDILIAVDHGPNSKHAFDWALIHLCRLAD 70
           Y+WREV LP+L P    EPELERET ERRRGRDILIAVDHGPNSKHAFDWALIH CRLAD
Sbjct: 10  YNWREVRLPSLIPVVP-EPELERETAERRRGRDILIAVDHGPNSKHAFDWALIHFCRLAD 68

Query: 71  TIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLK 130
           TIHLVHAVS+V+N++VY+ SQGLMEKLA+EA +VAMVRT ARIV+GDA KVICKEAE+LK
Sbjct: 69  TIHLVHAVSNVKNELVYEFSQGLMEKLAVEAFEVAMVRTVARIVQGDAGKVICKEAEKLK 128

Query: 131 PAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKEAGDASLI 179
           PAAVV+G+RGR LIQSVLQGSV E+  H+CK+AP+++VPGKEAG+ S+I
Sbjct: 129 PAAVVMGTRGRSLIQSVLQGSVSEHVFHNCKSAPVVIVPGKEAGETSVI 177

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|351725895|ref|NP_001237876.1| uncharacterized protein LOC100306377 [Glycine max] gi|255628351|gb|ACU14520.1| unknown [Glycine max] gi|255647216|gb|ACU24076.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|45720184|emb|CAG14983.1| putative universal stress protein [Cicer arietinum] Back     alignment and taxonomy information
>gi|255543701|ref|XP_002512913.1| conserved hypothetical protein [Ricinus communis] gi|223547924|gb|EEF49416.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|388522921|gb|AFK49522.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|357467311|ref|XP_003603940.1| Universal stress protein A-like protein [Medicago truncatula] gi|217075524|gb|ACJ86122.1| unknown [Medicago truncatula] gi|355492988|gb|AES74191.1| Universal stress protein A-like protein [Medicago truncatula] gi|388519485|gb|AFK47804.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|224080359|ref|XP_002306112.1| predicted protein [Populus trichocarpa] gi|222849076|gb|EEE86623.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|195626300|gb|ACG34980.1| pathogen induced protein 2-4 [Zea mays] Back     alignment and taxonomy information
>gi|325975910|gb|ADZ48040.1| universal stress protein [Salvia miltiorrhiza] Back     alignment and taxonomy information
>gi|284433778|gb|ADB85095.1| response to dessication RD2 [Jatropha curcas] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query179
TAIR|locus:2049334193 RD2 "AT2G21620" [Arabidopsis t 0.988 0.917 0.616 1.7e-57
TAIR|locus:2076381204 AT3G58450 "AT3G58450" [Arabido 0.603 0.529 0.302 8.4e-16
TAIR|locus:2199282160 AT1G68300 "AT1G68300" [Arabido 0.346 0.387 0.375 1.4e-12
TAIR|locus:2222687175 AT5G14680 "AT5G14680" [Arabido 0.413 0.422 0.368 1.5e-11
TAIR|locus:2096089162 AT3G62550 "AT3G62550" [Arabido 0.486 0.537 0.3 4.9e-11
TAIR|locus:2043273162 AT2G47710 "AT2G47710" [Arabido 0.307 0.339 0.345 3.5e-10
TAIR|locus:2084153175 AT3G01520 "AT3G01520" [Arabido 0.340 0.348 0.387 4.2e-10
TAIR|locus:2131719260 PHOS34 "AT4G27320" [Arabidopsi 0.368 0.253 0.410 4.4e-09
TAIR|locus:2081531226 AT3G11930 "AT3G11930" [Arabido 0.391 0.309 0.297 9.2e-09
TAIR|locus:2147319242 PHOS32 "AT5G54430" [Arabidopsi 0.385 0.285 0.376 3.8e-08
TAIR|locus:2049334 RD2 "AT2G21620" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
 Identities = 114/185 (61%), Positives = 143/185 (77%)

Query:     1 MEPVKEEEEVYSWREVNLPALSPTAAAXXXXXXXXXXXXXXXDILIAVDHGPNSKHAFDW 60
             ME + E+EE YS+REV LP+L P                   D+++AVDHGPNSKHAFDW
Sbjct:     1 MEALPEDEE-YSFREVVLPSLIPVVPEPELERESGERRRGR-DVIVAVDHGPNSKHAFDW 58

Query:    61 ALIHLCRLADTIHLVHAVSS------VQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIV 114
             AL+H CRLADT+HLVHAVSS      V+N +VY+ SQ LMEKLA+EA  VAMV++ AR+V
Sbjct:    59 ALVHFCRLADTLHLVHAVSSSFSLQCVKNDVVYETSQALMEKLAVEAYQVAMVKSVARVV 118

Query:   115 EGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKEAG 174
             EGDA KVICKEAE++KPAAV++G+RGR L++SVLQGSV EYC H+CK+AP+I+VPGKEAG
Sbjct:   119 EGDAGKVICKEAEKVKPAAVIVGTRGRSLVRSVLQGSVSEYCFHNCKSAPVIIVPGKEAG 178

Query:   175 DASLI 179
             D S++
Sbjct:   179 DESIV 183
GO:0003674 "molecular_function" evidence=ND
GO:0005737 "cytoplasm" evidence=ISM
GO:0009269 "response to desiccation" evidence=IEP
GO:0002238 "response to molecule of fungal origin" evidence=RCA
GO:0016036 "cellular response to phosphate starvation" evidence=RCA
GO:0019375 "galactolipid biosynthetic process" evidence=RCA
GO:0042631 "cellular response to water deprivation" evidence=RCA
GO:0005886 "plasma membrane" evidence=IDA
TAIR|locus:2076381 AT3G58450 "AT3G58450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2199282 AT1G68300 "AT1G68300" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2222687 AT5G14680 "AT5G14680" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2096089 AT3G62550 "AT3G62550" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043273 AT2G47710 "AT2G47710" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084153 AT3G01520 "AT3G01520" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2131719 PHOS34 "AT4G27320" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081531 AT3G11930 "AT3G11930" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2147319 PHOS32 "AT5G54430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query179
cd00293130 cd00293, USP_Like, Usp: Universal stress protein f 3e-23
pfam00582139 pfam00582, Usp, Universal stress protein family 3e-17
COG0589154 COG0589, UspA, Universal stress protein UspA and r 5e-10
>gnl|CDD|238182 cd00293, USP_Like, Usp: Universal stress protein family Back     alignment and domain information 
 Score = 88.6 bits (220), Expect = 3e-23
 Identities = 44/130 (33%), Positives = 64/130 (49%), Gaps = 6/130 (4%)

Query: 44  ILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAI---- 99
           IL+AVD    S+ A  WA     RL   + L+H V    +           E  A+    
Sbjct: 2   ILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPSSAAELAELLEEEARALLEAL 61

Query: 100 -EAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLH 158
            EA+  A V+ +  ++EGD A+ I + AE L    +V+GSRGR  ++ +L GSV E  L 
Sbjct: 62  REALAEAGVKVETVVLEGDPAEAILEAAEELGADLIVMGSRGRSGLRRLLLGSVAERVLR 121

Query: 159 HCKTAPIIVV 168
           H    P++VV
Sbjct: 122 HAPC-PVLVV 130

The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity. Length = 130
>gnl|CDD|216006 pfam00582, Usp, Universal stress protein family Back     alignment and domain information
>gnl|CDD|223662 COG0589, UspA, Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 179
PRK15005144 universal stress protein F; Provisional 99.93
PRK15456142 universal stress protein UspG; Provisional 99.93
PF00582140 Usp: Universal stress protein family; InterPro: IP 99.92
PRK09982142 universal stress protein UspD; Provisional 99.91
PRK15118144 universal stress global response regulator UspA; P 99.91
cd01989146 STK_N The N-terminal domain of Eukaryotic Serine T 99.9
PRK10116142 universal stress protein UspC; Provisional 99.9
PRK11175305 universal stress protein UspE; Provisional 99.9
cd01988132 Na_H_Antiporter_C The C-terminal domain of a subfa 99.88
cd01987124 USP_OKCHK USP domain is located between the N-term 99.87
PRK11175 305 universal stress protein UspE; Provisional 99.86
cd00293130 USP_Like Usp: Universal stress protein family. The 99.82
COG0589154 UspA Universal stress protein UspA and related nuc 99.79
PRK12652 357 putative monovalent cation/H+ antiporter subunit E 99.62
PRK10490 895 sensor protein KdpD; Provisional 99.58
COG2205 890 KdpD Osmosensitive K+ channel histidine kinase [Si 99.45
cd0198486 AANH_like Adenine nucleotide alpha hydrolases supe 98.56
PLN03159 832 cation/H(+) antiporter 15; Provisional 97.42
PLN03159832 cation/H(+) antiporter 15; Provisional 97.05
TIGR02432189 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-t 96.87
PF01171182 ATP_bind_3: PP-loop family; InterPro: IPR011063 Th 96.43
cd01992185 PP-ATPase N-terminal domain of predicted ATPase of 96.27
PRK12342 254 hypothetical protein; Provisional 95.48
cd01993185 Alpha_ANH_like_II This is a subfamily of Adenine n 95.03
PRK03359256 putative electron transfer flavoprotein FixA; Revi 94.93
COG2086 260 FixA Electron transfer flavoprotein, beta subunit 94.22
COG0037 298 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle 93.93
PF01012164 ETF: Electron transfer flavoprotein domain; InterP 93.66
PF00448196 SRP54: SRP54-type protein, GTPase domain; InterPro 93.64
TIGR00591 454 phr2 photolyase PhrII. All proteins in this family 93.4
PF00875165 DNA_photolyase: DNA photolyase from Prosite.; Inte 93.21
PRK10696258 tRNA 2-thiocytidine biosynthesis protein TtcA; Pro 92.85
PRK05253 301 sulfate adenylyltransferase subunit 2; Provisional 92.78
TIGR02039 294 CysD sulfate adenylyltransferase, small subunit. I 90.57
PRK10867 433 signal recognition particle protein; Provisional 89.87
cd01986103 Alpha_ANH_like Adenine nucleotide alpha hydrolases 89.6
TIGR02852187 spore_dpaB dipicolinic acid synthetase, B subunit. 88.96
PRK13820 394 argininosuccinate synthase; Provisional 88.05
COG0541 451 Ffh Signal recognition particle GTPase [Intracellu 87.9
cd01713173 PAPS_reductase This domain is found in phosphoaden 87.47
PRK12563 312 sulfate adenylyltransferase subunit 2; Provisional 87.4
TIGR00268252 conserved hypothetical protein TIGR00268. The N-te 87.14
PRK07313182 phosphopantothenoylcysteine decarboxylase; Validat 86.9
PRK05579 399 bifunctional phosphopantothenoylcysteine decarboxy 86.5
TIGR00959 428 ffh signal recognition particle protein. This mode 86.44
COG0552340 FtsY Signal recognition particle GTPase [Intracell 85.95
PRK13982 475 bifunctional SbtC-like/phosphopantothenoylcysteine 85.79
PRK08091228 ribulose-phosphate 3-epimerase; Validated 85.48
cd01985181 ETF The electron transfer flavoprotein (ETF) serve 85.4
cd01995169 ExsB ExsB is a transcription regulator related pro 85.21
PRK08305196 spoVFB dipicolinate synthase subunit B; Reviewed 84.57
TIGR02765 429 crypto_DASH cryptochrome, DASH family. Photolyases 84.48
TIGR02113177 coaC_strep phosphopantothenoylcysteine decarboxyla 84.4
PRK09722229 allulose-6-phosphate 3-epimerase; Provisional 84.4
COG0036220 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate 84.33
PRK08745223 ribulose-phosphate 3-epimerase; Provisional 84.07
PRK14057254 epimerase; Provisional 84.0
PF02887117 PK_C: Pyruvate kinase, alpha/beta domain; InterPro 83.34
PF04459204 DUF512: Protein of unknown function (DUF512); Inte 83.2
TIGR03556 471 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 83.17
), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF02844">PF02844100 GARS_N: Phosphoribosylglycinamide synthetase, N do 83.06
KOG1467556 consensus Translation initiation factor 2B, delta 82.89
TIGR01425 429 SRP54_euk signal recognition particle protein SRP5 82.64
COG1927 277 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltet 82.45
KOG1650769 consensus Predicted K+/H+-antiporter [Inorganic io 82.19
KOG0781587 consensus Signal recognition particle receptor, al 81.89
PRK00919 307 GMP synthase subunit B; Validated 81.19
cd00408 281 DHDPS-like Dihydrodipicolinate synthase family. A 80.74
cd01990202 Alpha_ANH_like_I This is a subfamily of Adenine nu 80.65
>PRK15005 universal stress protein F; Provisional Back     alignment and domain information 
Probab=99.93  E-value=2.5e-24  Score=151.30  Aligned_cols=127  Identities=17%  Similarity=0.279  Sum_probs=100.3

Q ss_pred             CCCeEEEEecCCcc--hHHHHHHHHHHhccCCCEEEEEEEecCCchh-----------h----HHHHHHHHHHHHHHHHh
Q 030298           40 RGRDILIAVDHGPN--SKHAFDWALIHLCRLADTIHLVHAVSSVQNQ-----------I----VYDMSQGLMEKLAIEAM  102 (179)
Q Consensus        40 ~~~~Ilv~vd~s~~--s~~al~~a~~la~~~~~~l~~v~v~~~~~~~-----------~----~~~~~~~~l~~~~~~~~  102 (179)
                      ||++||+|+|+|+.  +..++++|..+|+..+++++++||.+.....           .    ..+...+.+++..+. +
T Consensus         1 m~~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~   79 (144)
T PRK15005          1 MNRTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYASLGLAYSAELPAMDDLKAEAKSQLEEIIKK-F   79 (144)
T ss_pred             CCccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccCcccccccccccccchHHHHHHHHHHHHHHHHHHH-h
Confidence            47999999999998  5799999999999999999999998753210           0    011112233332222 2


Q ss_pred             hhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEc
Q 030298          103 DVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP  169 (179)
Q Consensus       103 ~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~  169 (179)
                      ...+.+++.++..|++.+.|+++++++++||||||++ ++.+.++++||++++|+++++ ||||+||
T Consensus        80 ~~~~~~~~~~v~~G~p~~~I~~~a~~~~~DLIV~Gs~-~~~~~~~llGS~a~~vl~~a~-cpVlvVr  144 (144)
T PRK15005         80 KLPTDRVHVHVEEGSPKDRILELAKKIPADMIIIASH-RPDITTYLLGSNAAAVVRHAE-CSVLVVR  144 (144)
T ss_pred             CCCCCceEEEEeCCCHHHHHHHHHHHcCCCEEEEeCC-CCCchheeecchHHHHHHhCC-CCEEEeC
Confidence            2345677888889999999999999999999999988 567888999999999999999 9999996

>PRK15456 universal stress protein UspG; Provisional Back     alignment and domain information
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents Back     alignment and domain information
>PRK09982 universal stress protein UspD; Provisional Back     alignment and domain information
>PRK15118 universal stress global response regulator UspA; Provisional Back     alignment and domain information
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases Back     alignment and domain information
>PRK10116 universal stress protein UspC; Provisional Back     alignment and domain information
>PRK11175 universal stress protein UspE; Provisional Back     alignment and domain information
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea Back     alignment and domain information
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family Back     alignment and domain information
>PRK11175 universal stress protein UspE; Provisional Back     alignment and domain information
>cd00293 USP_Like Usp: Universal stress protein family Back     alignment and domain information
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms] Back     alignment and domain information
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed Back     alignment and domain information
>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF) Back     alignment and domain information
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain Back     alignment and domain information
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,] Back     alignment and domain information
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK12342 hypothetical protein; Provisional Back     alignment and domain information
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed Back     alignment and domain information
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion] Back     alignment and domain information
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems Back     alignment and domain information
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] Back     alignment and domain information
>TIGR00591 phr2 photolyase PhrII Back     alignment and domain information
>PF00875 DNA_photolyase: DNA photolyase from Prosite Back     alignment and domain information
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional Back     alignment and domain information
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional Back     alignment and domain information
>TIGR02039 CysD sulfate adenylyltransferase, small subunit Back     alignment and domain information
>PRK10867 signal recognition particle protein; Provisional Back     alignment and domain information
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases Back     alignment and domain information
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit Back     alignment and domain information
>PRK13820 argininosuccinate synthase; Provisional Back     alignment and domain information
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] Back     alignment and domain information
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase Back     alignment and domain information
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional Back     alignment and domain information
>TIGR00268 conserved hypothetical protein TIGR00268 Back     alignment and domain information
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated Back     alignment and domain information
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated Back     alignment and domain information
>TIGR00959 ffh signal recognition particle protein Back     alignment and domain information
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional Back     alignment and domain information
>PRK08091 ribulose-phosphate 3-epimerase; Validated Back     alignment and domain information
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases Back     alignment and domain information
>cd01995 ExsB ExsB is a transcription regulator related protein Back     alignment and domain information
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed Back     alignment and domain information
>TIGR02765 crypto_DASH cryptochrome, DASH family Back     alignment and domain information
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal Back     alignment and domain information
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional Back     alignment and domain information
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK08745 ribulose-phosphate 3-epimerase; Provisional Back     alignment and domain information
>PRK14057 epimerase; Provisional Back     alignment and domain information
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2 Back     alignment and domain information
>PF04459 DUF512: Protein of unknown function (DUF512); InterPro: IPR007549 This is a domain of uncharacterised prokaryotic proteins Back     alignment and domain information
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type Back     alignment and domain information
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6 Back     alignment and domain information
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01425 SRP54_euk signal recognition particle protein SRP54 Back     alignment and domain information
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion] Back     alignment and domain information
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK00919 GMP synthase subunit B; Validated Back     alignment and domain information
>cd00408 DHDPS-like Dihydrodipicolinate synthase family Back     alignment and domain information
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query179
2gm3_A175 Crystal Structure Of An Universal Stress Protein Fa 2e-07
>pdb|2GM3|A Chain A, Crystal Structure Of An Universal Stress Protein Family Protein From Arabidopsis Thaliana At3g01520 With Amp Bound Length = 175 Back     alignment and structure 
Iteration: 1

 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 33/53 (62%)
Query: 107 VRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHH 159
           V  +A I  GD   VIC+E +R++P  +V+GSRG G  Q V  G+V  +C+ H
Sbjct: 101 VGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKH 153

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query179
2gm3_A175 Unknown protein; AT3G01520, putative ethylene-resp 2e-25
2z08_A137 Universal stress protein family; uncharacterized c 8e-19
3idf_A138 USP-like protein; universal, stress, PSI, MCSG, st 3e-18
3loq_A294 Universal stress protein; structural genomics, PSI 3e-18
3loq_A 294 Universal stress protein; structural genomics, PSI 1e-12
1mjh_A162 Protein (ATP-binding domain of protein MJ0577); hy 1e-17
1tq8_A163 Hypothetical protein RV1636; MTCY01B2.28, structur 4e-17
2dum_A170 Hypothetical protein PH0823; conserved hypothetica 5e-16
3s3t_A146 Nucleotide-binding protein, universal stress PROT 1e-15
3tnj_A150 Universal stress protein (USP); structural genomic 3e-15
3hgm_A147 Universal stress protein TEAD; rossman fold, signa 7e-15
3fdx_A143 Putative filament protein / universal stress PROT; 1e-14
1jmv_A141 USPA, universal stress protein A; chaperone; 1.85A 2e-14
3dlo_A155 Universal stress protein; unknown function, struct 3e-14
3cis_A309 Uncharacterized protein; alpha/beta hydrolase, ATP 3e-13
3cis_A 309 Uncharacterized protein; alpha/beta hydrolase, ATP 2e-11
3fg9_A156 Protein of universal stress protein USPA family; A 4e-13
3olq_A319 Universal stress protein E; structural genomics, P 2e-11
3olq_A 319 Universal stress protein E; structural genomics, P 1e-09
3mt0_A290 Uncharacterized protein PA1789; structural genomic 7e-11
3mt0_A 290 Uncharacterized protein PA1789; structural genomic 3e-09
3ab8_A268 Putative uncharacterized protein TTHA0350; tandem- 2e-10
3ab8_A 268 Putative uncharacterized protein TTHA0350; tandem- 5e-08
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4 Length = 175 Back     alignment and structure
 Score = 95.3 bits (237), Expect = 2e-25
 Identities = 36/166 (21%), Positives = 68/166 (40%), Gaps = 31/166 (18%)

Query: 42  RDILIAVD---------HGPNSKHAFDWALIHLCRLADT---IHLVHAVSSVQNQI---- 85
             +++AV+            + K AF+W L  + R   +   I L+H     ++      
Sbjct: 6   TKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVD 65

Query: 86  -------VYDMSQGLMEKLAIEAMDVAM-------VRTKARIVEGDAAKVICKEAERLKP 131
                   +   +   +   +  ++  +       V  +A I  GD   VIC+E +R++P
Sbjct: 66  SIYASPEDFRDMRQSNKAKGLHLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRP 125

Query: 132 AAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKEAGDAS 177
             +V+GSRG G  Q V  G+V  +C+ H +  P++ +        S
Sbjct: 126 DFLVVGSRGLGRFQKVFVGTVSAFCVKHAEC-PVMTIKRNADETPS 170
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A Length = 137 Back     alignment and structure
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes} Length = 138 Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Length = 294 Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Length = 294 Back     alignment and structure
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4 Length = 162 Back     alignment and structure
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4 Length = 163 Back     alignment and structure
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii} Length = 170 Back     alignment and structure
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} Length = 146 Back     alignment and structure
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A* Length = 150 Back     alignment and structure
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} Length = 147 Back     alignment and structure
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A* Length = 143 Back     alignment and structure
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4 Length = 141 Back     alignment and structure
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A* Length = 155 Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Length = 309 Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Length = 309 Back     alignment and structure
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum} Length = 156 Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Length = 319 Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Length = 319 Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Length = 290 Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Length = 290 Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Length = 268 Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Length = 268 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query179
3tnj_A150 Universal stress protein (USP); structural genomic 99.95
3s3t_A146 Nucleotide-binding protein, universal stress PROT 99.94
2z08_A137 Universal stress protein family; uncharacterized c 99.94
1mjh_A162 Protein (ATP-binding domain of protein MJ0577); hy 99.94
3hgm_A147 Universal stress protein TEAD; rossman fold, signa 99.94
2dum_A170 Hypothetical protein PH0823; conserved hypothetica 99.94
1tq8_A163 Hypothetical protein RV1636; MTCY01B2.28, structur 99.93
3dlo_A155 Universal stress protein; unknown function, struct 99.93
3fg9_A156 Protein of universal stress protein USPA family; A 99.93
3idf_A138 USP-like protein; universal, stress, PSI, MCSG, st 99.93
3mt0_A290 Uncharacterized protein PA1789; structural genomic 99.92
3fdx_A143 Putative filament protein / universal stress PROT; 99.91
2gm3_A175 Unknown protein; AT3G01520, putative ethylene-resp 99.91
1jmv_A141 USPA, universal stress protein A; chaperone; 1.85A 99.91
3cis_A309 Uncharacterized protein; alpha/beta hydrolase, ATP 99.9
3loq_A294 Universal stress protein; structural genomics, PSI 99.9
3olq_A319 Universal stress protein E; structural genomics, P 99.9
3olq_A 319 Universal stress protein E; structural genomics, P 99.88
1q77_A138 Hypothetical protein AQ_178; structural genomics, 99.87
3mt0_A 290 Uncharacterized protein PA1789; structural genomic 99.87
3ab8_A 268 Putative uncharacterized protein TTHA0350; tandem- 99.87
3loq_A 294 Universal stress protein; structural genomics, PSI 99.87
3cis_A 309 Uncharacterized protein; alpha/beta hydrolase, ATP 99.86
3ab8_A268 Putative uncharacterized protein TTHA0350; tandem- 99.84
2iel_A138 Hypothetical protein TT0030; TT0030,thermus thermo 96.83
1wy5_A 317 TILS, hypothetical UPF0072 protein AQ_1887; N-type 93.94
3a2k_A 464 TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, 93.65
2xry_A 482 Deoxyribodipyrimidine photolyase; DNA damage, DNA 93.55
3umv_A 506 Deoxyribodipyrimidine photo-lyase; CPD cyclobutane 92.86
3g40_A294 Na-K-CL cotransporter; alpha/beta fold 10-stranded 92.73
1o97_C 264 Electron transferring flavoprotein beta-subunit; F 92.25
1zun_A 325 Sulfate adenylyltransferase subunit 2; beta barrel 91.69
1efv_B255 Electron transfer flavoprotein; electron transport 89.36
1efp_B252 ETF, protein (electron transfer flavoprotein); ele 88.98
3ih5_A217 Electron transfer flavoprotein alpha-subunit; alph 88.98
2wq7_A 543 RE11660P; lyase-DNA complex, DNA repair, DNA lesio 87.19
2oq2_A261 Phosphoadenosine phosphosulfate reductase; sulfate 86.29
4b4k_A181 N5-carboxyaminoimidazole ribonucleotide mutase; is 86.28
3kcq_A215 Phosphoribosylglycinamide formyltransferase; struc 85.96
4grd_A173 N5-CAIR mutase, phosphoribosylaminoimidazole carbo 85.48
2ywx_A157 Phosphoribosylaminoimidazole carboxylase catalyti; 83.74
1iv0_A98 Hypothetical protein; rnaseh-like, YQGF, structura 83.57
3tvs_A 538 Cryptochrome-1; circadian clock light entrainment, 83.4
1np7_A 489 DNA photolyase; protein with FAD cofactor; HET: DN 83.01
2wsi_A306 FAD synthetase; transferase, nucleotidyltransferas 82.99
3trh_A169 Phosphoribosylaminoimidazole carboxylase carboxylt 82.43
1k92_A 455 Argininosuccinate synthase, argininosuccinate SY; 81.77
2c5s_A413 THII, probable thiamine biosynthesis protein THII; 81.6
1sur_A215 PAPS reductase; assimilatory sulfate reduction, 3- 81.45
3kuu_A174 Phosphoribosylaminoimidazole carboxylase catalyti 81.27
1xmp_A170 PURE, phosphoribosylaminoimidazole carboxylase; pu 80.61
1ni5_A 433 Putative cell cycle protein MESJ; structural genom 80.59
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A* Back     alignment and structure
Probab=99.95  E-value=1.3e-26  Score=162.48  Aligned_cols=134  Identities=19%  Similarity=0.275  Sum_probs=99.7

Q ss_pred             cccCCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchh-------------hHHHHHHHHHHHHHHHHhh
Q 030298           37 ERRRGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQ-------------IVYDMSQGLMEKLAIEAMD  103 (179)
Q Consensus        37 ~~~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~-------------~~~~~~~~~l~~~~~~~~~  103 (179)
                      .|+++++||||+|+++.+..++++|..+|+..+++++++||.+.....             ...+...+..++.+++..+
T Consensus         2 ~m~~~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   81 (150)
T 3tnj_A            2 HMSVYHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGN   81 (150)
T ss_dssp             --CCCSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCccceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHH
Confidence            367899999999999999999999999999999999999998753210             1122233333333444444


Q ss_pred             hcCce-eEEEEecCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCC
Q 030298          104 VAMVR-TKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKE  172 (179)
Q Consensus       104 ~~~~~-~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~  172 (179)
                      ..++. +++.+..|++.+.|+++++++++||||||+++++.+. +++||++++++++++ ||||+||+..
T Consensus        82 ~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~-~~~Gs~~~~vl~~~~-~pVlvv~~~~  149 (150)
T 3tnj_A           82 TLGIDPAHRWLVWGEPREEIIRIAEQENVDLIVVGSHGRHGLA-LLLGSTANSVLHYAK-CDVLAVRLRD  149 (150)
T ss_dssp             HHTCCGGGEEEEESCHHHHHHHHHHHTTCSEEEEEEC---------CCCHHHHHHHHCS-SEEEEEECCC
T ss_pred             HcCCCcceEEEecCCHHHHHHHHHHHcCCCEEEEecCCCCCcC-eEecchHHHHHHhCC-CCEEEEeCCC
Confidence            44666 4677888999999999999999999999999999999 999999999999999 9999999863
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0 Back     alignment and structure
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A Back     alignment and structure
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4 Back     alignment and structure
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0 Back     alignment and structure
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii} Back     alignment and structure
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4 Back     alignment and structure
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A* Back     alignment and structure
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum} Back     alignment and structure
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes} Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Back     alignment and structure
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A* Back     alignment and structure
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4 Back     alignment and structure
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4 Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Back     alignment and structure
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4 Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Back     alignment and structure
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4 Back     alignment and structure
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A* Back     alignment and structure
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus} Back     alignment and structure
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A* Back     alignment and structure
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group} Back     alignment and structure
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans} Back     alignment and structure
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C* Back     alignment and structure
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2 Back     alignment and structure
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S* Back     alignment and structure
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 Back     alignment and structure
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A* Back     alignment and structure
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis} Back     alignment and structure
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0 Back     alignment and structure
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia} Back     alignment and structure
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii} Back     alignment and structure
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8 Back     alignment and structure
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1 Back     alignment and structure
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii} Back     alignment and structure
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A* Back     alignment and structure
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1 Back     alignment and structure
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2 Back     alignment and structure
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A* Back     alignment and structure
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1 Back     alignment and structure
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 179
d2z3va1135 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 { 1e-14
d2gm3a1171 c.26.2.4 (A:5-175) Putative ethylene-responsive pr 4e-13
d1tq8a_147 c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobac 2e-12
d1mjha_160 c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archa 3e-12
d1jmva_140 c.26.2.4 (A:) Universal stress protein A, UspA {Ha 3e-11
d1q77a_138 c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex 5e-07
>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]} Length = 135 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Hypothetical protein TTHA0895
species: Thermus thermophilus [TaxId: 274]

 Score = 64.9 bits (157), Expect = 1e-14
 Identities = 29/135 (21%), Positives = 58/135 (42%), Gaps = 9/135 (6%)

Query: 42  RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEA 101
           + IL+A D   +++ A + A          + +VHA   V + +     +  + +    A
Sbjct: 2   KTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDYLGEPFFEEALRRRLERA 61

Query: 102 MDVA--------MVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVG 153
             V         + +  A ++EG  A+ I + A   K   +V+G+RG G + S+  GS  
Sbjct: 62  EGVLEEARALTGVPKEDALLLEGVPAEAILQAARAEKADLIVMGTRGLGALGSLFLGSQS 121

Query: 154 EYCLHHCKTAPIIVV 168
           +  +      P+++V
Sbjct: 122 QRVVAEAPC-PVLLV 135
>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 171 Back     information, alignment and structure
>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 147 Back     information, alignment and structure
>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 160 Back     information, alignment and structure
>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]} Length = 140 Back     information, alignment and structure
>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]} Length = 138 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query179
d1mjha_160 "Hypothetical" protein MJ0577 {Archaeon Methanococ 99.95
d2z3va1135 Hypothetical protein TTHA0895 {Thermus thermophilu 99.93
d1tq8a_147 Hypothetical protein Rv1636 {Mycobacterium tubercu 99.92
d2gm3a1171 Putative ethylene-responsive protein AT3g01520/F4P 99.9
d1jmva_140 Universal stress protein A, UspA {Haemophilus infl 99.9
d1q77a_138 Hypothetical protein Aq_178 {Aquifex aeolicus [Tax 99.86
d1wy5a1216 TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId 95.6
d1efpb_246 Small, beta subunit of electron transfer flavoprot 95.43
d3clsc1 262 Small, beta subunit of electron transfer flavoprot 94.7
d1np7a2204 Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 93.11
d1efvb_252 Small, beta subunit of electron transfer flavoprot 91.9
d2j07a2170 DNA photolyase {Thermus thermophilus [TaxId: 274]} 91.84
d1owla2202 DNA photolyase {Synechococcus elongatus [TaxId: 32 89.97
d1u11a_159 N5-CAIR mutase (phosphoribosylaminoimidazole carbo 88.88
d3clsd1192 Large, alpha subunit of electron transfer flavopro 88.23
d1ls1a2207 GTPase domain of the signal sequence recognition p 87.31
d1xmpa_155 N5-CAIR mutase (phosphoribosylaminoimidazole carbo 86.79
d1p3y1_183 MrsD {Bacillus sp. hil-y85/54728 [TaxId: 69002]} 86.53
d1qcza_163 N5-CAIR mutase (phosphoribosylaminoimidazole carbo 86.14
d1ni5a1227 tRNA-Ile-lysidine synthetase, TilS, N-terminal dom 85.19
d1o4va_169 N5-CAIR mutase (phosphoribosylaminoimidazole carbo 84.93
d2pjua1186 Propionate catabolism operon regulatory protein Pr 84.29
d1xkya1 292 Dihydrodipicolinate synthase {Bacillus anthracis [ 83.22
d2c5sa1218 Thiamine biosynthesis protein ThiI, C-terminal dom 83.18
d1gsoa2105 Glycinamide ribonucleotide synthetase (GAR-syn), N 80.84
>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: "Hypothetical" protein MJ0577
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.95  E-value=1e-27  Score=168.55  Aligned_cols=132  Identities=22%  Similarity=0.299  Sum_probs=109.8

Q ss_pred             cCCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhh-------------------H--------HHHHH
Q 030298           39 RRGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQI-------------------V--------YDMSQ   91 (179)
Q Consensus        39 ~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~-------------------~--------~~~~~   91 (179)
                      .||++||||+|+++.+.+++++|..+|+..+++++++||.+......                   .        .+..+
T Consensus         1 ~m~~~ILvavD~s~~s~~al~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (160)
T d1mjha_           1 VMYKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAK   80 (160)
T ss_dssp             CCCCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHH
T ss_pred             CCcCeEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEEEecccccccccccccccccccccchhHHHHHHHHHHHHHHHHH
Confidence            37899999999999999999999999999999999999976532110                   0        01112


Q ss_pred             HHHHHHHHHHhhhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298           92 GLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK  171 (179)
Q Consensus        92 ~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~  171 (179)
                      +.++.. ...+...|+++++.+..|++.+.|++++++.++||||||+++++++.++++||++++|+++++ |||++||++
T Consensus        81 ~~l~~~-~~~~~~~gv~~~~~~~~G~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~GS~a~~vl~~s~-~pVlvV~~~  158 (160)
T d1mjha_          81 NKMENI-KKELEDVGFKVKDIIVVGIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSN-KPVLVVKRK  158 (160)
T ss_dssp             HHHHHH-HHHHHHTTCEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHHHHHCC-SCEEEECCC
T ss_pred             HHHHHH-HHHHHhcCCeEEEEEEeccHHHHHhhhhhccccceEEeccCCCCcccccccCcHHHHHHhcCC-CCEEEEcCC
Confidence            223222 223456788999999999999999999999999999999999999999999999999999999 999999986


Q ss_pred             C
Q 030298          172 E  172 (179)
Q Consensus       172 ~  172 (179)
                      .
T Consensus       159 ~  159 (160)
T d1mjha_         159 N  159 (160)
T ss_dssp             C
T ss_pred             C
Confidence            5
>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1efpb_ c.26.2.3 (B:) Small, beta subunit of electron transfer flavoprotein ETFP {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d3clsc1 c.26.2.3 (C:1-262) Small, beta subunit of electron transfer flavoprotein ETFP {Methylophilus methylotrophus [TaxId: 17]} Back     information, alignment and structure
>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 1143]} Back     information, alignment and structure
>d1efvb_ c.26.2.3 (B:) Small, beta subunit of electron transfer flavoprotein ETFP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2j07a2 c.28.1.1 (A:2-171) DNA photolyase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1owla2 c.28.1.1 (A:3-204) DNA photolyase {Synechococcus elongatus [TaxId: 32046]} Back     information, alignment and structure
>d1u11a_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Acetobacter aceti [TaxId: 435]} Back     information, alignment and structure
>d3clsd1 c.26.2.3 (D:1-192) Large, alpha subunit of electron transfer flavoprotein ETFP, N-terminal domain {Methylophilus methylotrophus [TaxId: 17]} Back     information, alignment and structure
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1xmpa_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1p3y1_ c.34.1.1 (1:) MrsD {Bacillus sp. hil-y85/54728 [TaxId: 69002]} Back     information, alignment and structure
>d1qcza_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2pjua1 c.92.3.1 (A:11-196) Propionate catabolism operon regulatory protein PrpR {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI, C-terminal domain {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure