Citrus Sinensis ID: 030299
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 179 | 2.2.26 [Sep-21-2011] | |||||||
| Q54VA8 | 270 | Putative tRNA (cytidine(3 | yes | no | 0.787 | 0.522 | 0.695 | 3e-55 | |
| Q22031 | 337 | Putative tRNA (cytidine(3 | yes | no | 0.782 | 0.415 | 0.677 | 8e-54 | |
| Q9UET6 | 329 | Putative tRNA (cytidine(3 | yes | no | 0.776 | 0.422 | 0.644 | 2e-51 | |
| O36015 | 285 | Putative tRNA (cytidine(3 | yes | no | 0.821 | 0.515 | 0.644 | 2e-51 | |
| Q9VEP1 | 302 | Putative tRNA (cytidine(3 | yes | no | 0.815 | 0.483 | 0.646 | 8e-51 | |
| Q9VDD9 | 320 | Putative tRNA (cytidine(3 | no | no | 0.854 | 0.478 | 0.613 | 8e-49 | |
| P38238 | 310 | tRNA (cytidine(32)/guanos | yes | no | 0.810 | 0.467 | 0.596 | 5e-45 | |
| A0B8A1 | 255 | Ribosomal RNA large subun | yes | no | 0.670 | 0.470 | 0.444 | 3e-26 | |
| Q4FMX1 | 203 | Ribosomal RNA large subun | yes | no | 0.865 | 0.763 | 0.374 | 9e-24 | |
| Q5BH88 | 806 | AdoMet-dependent rRNA met | no | no | 0.793 | 0.176 | 0.388 | 2e-23 |
| >sp|Q54VA8|TRM7_DICDI Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Dictyostelium discoideum GN=fsjA PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 214 bits (544), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 103/148 (69%), Positives = 124/148 (83%), Gaps = 7/148 (4%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MGK+S+DKRDIYYRKAKEEGWRARSAFKL+QIDEE+ IFEGVKRVVDLCAAPGSWSQVLS
Sbjct: 1 MGKSSKDKRDIYYRKAKEEGWRARSAFKLIQIDEEYQIFEGVKRVVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
R++Y K PD + IVA+DLQ MAP++GV+Q++GDIT T++ +I HFDG A
Sbjct: 61 RRIYGDGK-DPDVK------IVAVDLQEMAPLKGVVQIKGDITKYETSKQIISHFDGSLA 113
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILA 148
DL++ DGAPDVTGLHD+D + QSQLIL+
Sbjct: 114 DLIISDGAPDVTGLHDIDFYGQSQLILS 141
|
Probable methyltransferase. Dictyostelium discoideum (taxid: 44689) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q22031|TRM7_CAEEL Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Caenorhabditis elegans GN=R74.7 PE=3 SV=3 | Back alignment and function description |
|---|
Score = 209 bits (532), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 101/149 (67%), Positives = 118/149 (79%), Gaps = 9/149 (6%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MGK SRDKRDIYYR AKE WRARSAFKL+QID+EF I +GV+R VDLCAAPGSWSQVLS
Sbjct: 1 MGKTSRDKRDIYYRLAKENKWRARSAFKLMQIDDEFQILKGVRRAVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
++LY E IVAIDLQPMAPI GVIQ+QGDIT+ TA VI+HF G K+
Sbjct: 61 KRLY---------EEDQEAKIVAIDLQPMAPIPGVIQLQGDITSVDTANQVIKHFSGEKS 111
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAV 149
D+V+CDGAPDVTG+H +DEF+Q++LILA
Sbjct: 112 DIVICDGAPDVTGIHSLDEFMQAELILAA 140
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Probable methyltransferase. Caenorhabditis elegans (taxid: 6239) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9UET6|TRM7_HUMAN Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Homo sapiens GN=FTSJ1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 201 bits (512), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 96/149 (64%), Positives = 119/149 (79%), Gaps = 10/149 (6%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MG+ S+DKRD+YYR AKE GWRARSAFKLLQ+D+EF +F+GV R VDLCAAPGSWSQVLS
Sbjct: 1 MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
+K+ +G +VA+DLQ MAP+ GV+Q+QGDIT TA+ +I+HF GC A
Sbjct: 61 QKI---------GGQGS-GHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPA 110
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAV 149
DLVVCDGAPDVTGLHD+DE++Q+QL+LA
Sbjct: 111 DLVVCDGAPDVTGLHDVDEYMQAQLLLAA 139
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Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|O36015|TRM7_SCHPO Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC4F10.03c PE=3 SV=1 | Back alignment and function description |
|---|
Score = 201 bits (512), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 96/149 (64%), Positives = 120/149 (80%), Gaps = 2/149 (1%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MG++S+DKRD YYR AKE+GWRARSAFKLLQ++E+FN+FEG KRVVDLCAAPGSWSQVLS
Sbjct: 1 MGRSSKDKRDAYYRLAKEQGWRARSAFKLLQLNEQFNLFEGAKRVVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
R+L S + E P+IVA+DLQPMAPI+GV +Q DIT+ T +++ HF A
Sbjct: 61 RELLKNIDTSIAADEK--PMIVAVDLQPMAPIDGVCTLQLDITHPNTLSIILSHFGNEPA 118
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAV 149
DLVV DGAPDVTGLHD+DE++Q+Q++LA
Sbjct: 119 DLVVSDGAPDVTGLHDLDEYIQAQILLAA 147
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9VEP1|TRM71_DROME Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase 1 OS=Drosophila melanogaster GN=CG5220 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 199 bits (506), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 97/150 (64%), Positives = 116/150 (77%), Gaps = 4/150 (2%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MGK S+DKRDIYYR+AK+EGWRARSAFKLL +DE + I GV+R VDLCAAPGSWSQVLS
Sbjct: 1 MGKTSKDKRDIYYRQAKDEGWRARSAFKLLHVDEAYGILNGVQRAVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGC-K 119
RKLY + E I+A+DLQ MAPI G++Q+QGDIT TAE +I HF G K
Sbjct: 61 RKLYDTCET---DDEKSAVKIIAVDLQAMAPIRGILQLQGDITKQSTAEAIIGHFGGNEK 117
Query: 120 ADLVVCDGAPDVTGLHDMDEFVQSQLILAV 149
A LVVCDGAPDVTG+H+MDE++Q QL++A
Sbjct: 118 AQLVVCDGAPDVTGVHEMDEYMQHQLLVAA 147
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Probable methyltransferase. Drosophila melanogaster (taxid: 7227) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9VDD9|TRM72_DROME Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase 2 OS=Drosophila melanogaster GN=CG7009 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 192 bits (489), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 97/158 (61%), Positives = 119/158 (75%), Gaps = 5/158 (3%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MG+ S+DKRDI+YR AKE+GWRARSAFKLLQ DE F + EG+ R VDLCAAPGSWSQVL+
Sbjct: 1 MGRTSKDKRDIFYRLAKEQGWRARSAFKLLQADETFQLLEGLTRAVDLCAAPGSWSQVLA 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
++LY P L P+ RE I+A+DLQ MAPIEGV Q++ DI+ TAE +I F G KA
Sbjct: 61 KRLYEP--LPPEEREK--VKIIAVDLQGMAPIEGVKQLRADISKESTAEAIIEFFGGEKA 116
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLIL-AVSIQFFIYE 157
+VV DGAPD TG+HD D +VQ +L+L A+SI FI E
Sbjct: 117 QIVVSDGAPDSTGMHDFDSYVQGELLLSALSISTFILE 154
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Probable methyltransferase. Drosophila melanogaster (taxid: 7227) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|P38238|TRM7_YEAST tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRM7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 180 bits (456), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 90/151 (59%), Positives = 117/151 (77%), Gaps = 6/151 (3%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFE--GVKRVVDLCAAPGSWSQV 58
MGK+S+DKRD+YYRKAKE+G+RARSAFKLLQ++++F+ + +KRVVDLCAAPGSWSQV
Sbjct: 1 MGKSSKDKRDLYYRKAKEQGYRARSAFKLLQLNDQFHFLDDPNLKRVVDLCAAPGSWSQV 60
Query: 59 LSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGC 118
LSRKL+ SP S + D IV++DLQPM+PI V +Q DIT+ +T +++ F
Sbjct: 61 LSRKLF---DESPSSDKEDRK-IVSVDLQPMSPIPHVTTLQADITHPKTLARILKLFGNE 116
Query: 119 KADLVVCDGAPDVTGLHDMDEFVQSQLILAV 149
KAD V DGAPDVTGLHD+DE+VQ QLI++
Sbjct: 117 KADFVCSDGAPDVTGLHDLDEYVQQQLIMSA 147
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Methylates the 2'-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|A0B8A1|RLME_METTP Ribosomal RNA large subunit methyltransferase E OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rlmE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 117 bits (294), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 88/135 (65%), Gaps = 15/135 (11%)
Query: 5 SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLY 64
+RD++D YYRKAKEEG+RARSA+KL QI+++F+I RVVDL AAPG W QV
Sbjct: 2 ARDQKDHYYRKAKEEGYRARSAYKLKQINDKFHIIRRGSRVVDLGAAPGGWLQV------ 55
Query: 65 LPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVV 124
+RE ++V +DL+ + P+EG++ +QGDIT T E + G +AD+V+
Sbjct: 56 --------ARELSGGIVVGVDLERIEPLEGIVTIQGDITKEETLEQIAAAL-GGQADVVI 106
Query: 125 CDGAPDVTGLHDMDE 139
D AP+++G+ D+D
Sbjct: 107 SDAAPNLSGIWDVDH 121
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Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. Methanosaeta thermophila (strain DSM 6194 / PT) (taxid: 349307) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 6 |
| >sp|Q4FMX1|RLME_PELUB Ribosomal RNA large subunit methyltransferase E OS=Pelagibacter ubique (strain HTCC1062) GN=rlmE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 109 bits (273), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 100/171 (58%), Gaps = 16/171 (9%)
Query: 5 SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLY 64
++ KRDIY R+++ +G+RARSA+KL++IDE+F IF+ V+DL A+PGSWSQ +SR +
Sbjct: 12 NKQKRDIYVRQSQVDGYRARSAYKLIEIDEKFKIFKNGISVIDLGASPGSWSQYISRTV- 70
Query: 65 LPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVV 124
+ G L V+IDL+ M IE IQ++GD T+ + E + F K D+VV
Sbjct: 71 ---------KSGRL---VSIDLKGMEEIENTIQIKGDFTDLESQEKIKALFK-SKVDVVV 117
Query: 125 CDGAPDVTGLHDMDEFVQSQLILAVSIQFFIYELVFCLRQLLQYVILDGSY 175
D A + TG+ D+D + LA+ F E++ + + + L S+
Sbjct: 118 SDMAVNTTGIKDIDAIYTGE--LAMEAMNFSKEMLVKEGRFVSKIFLGSSF 166
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Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. Pelagibacter ubique (strain HTCC1062) (taxid: 335992) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 6 |
| >sp|Q5BH88|SPB1_EMENI AdoMet-dependent rRNA methyltransferase spb1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=spb1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 90/157 (57%), Gaps = 15/157 (9%)
Query: 10 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKL 69
D +YR AKE+G+RAR+AFKL+Q+++++ E K ++DLCAAPGSW QV + +PA+
Sbjct: 13 DKWYRLAKEKGYRARAAFKLVQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAE--CMPAQ- 69
Query: 70 SPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAP 129
LIV +DL P+ PI VI Q DIT + + H KAD V+ DGAP
Sbjct: 70 ---------SLIVGVDLAPIKPIPRVITFQQDITTEKCRATIRSHLKHWKADTVLHDGAP 120
Query: 130 DVTGLHDMDEFVQSQLI---LAVSIQFFIYELVFCLR 163
+V D F Q++L+ L ++ +F + F +
Sbjct: 121 NVGTAWVQDAFSQAELVLESLKLATEFLVEGGTFVTK 157
|
Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit. Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 179 | ||||||
| 225440636 | 316 | PREDICTED: putative ribosomal RNA methyl | 0.826 | 0.468 | 0.972 | 1e-78 | |
| 255581073 | 316 | ribosomal RNA methyltransferase, putativ | 0.826 | 0.468 | 0.966 | 1e-77 | |
| 449439914 | 316 | PREDICTED: putative ribosomal RNA methyl | 0.826 | 0.468 | 0.959 | 2e-77 | |
| 30679168 | 309 | S-adenosyl-L-methionine-dependent methyl | 0.826 | 0.478 | 0.959 | 2e-77 | |
| 357446585 | 316 | rRNA methyltransferase-like protein [Med | 0.826 | 0.468 | 0.952 | 2e-77 | |
| 297806107 | 309 | hypothetical protein ARALYDRAFT_486954 [ | 0.826 | 0.478 | 0.959 | 3e-77 | |
| 6759446 | 287 | cell division-like protein [Arabidopsis | 0.826 | 0.515 | 0.959 | 4e-77 | |
| 242066866 | 317 | hypothetical protein SORBIDRAFT_04g03622 | 0.832 | 0.470 | 0.939 | 5e-77 | |
| 115469828 | 317 | Os06g0704900 [Oryza sativa Japonica Grou | 0.832 | 0.470 | 0.939 | 5e-77 | |
| 356549337 | 313 | PREDICTED: putative ribosomal RNA methyl | 0.821 | 0.469 | 0.952 | 6e-77 |
| >gi|225440636|ref|XP_002278921.1| PREDICTED: putative ribosomal RNA methyltransferase 1 [Vitis vinifera] gi|297740237|emb|CBI30419.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 297 bits (760), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 144/148 (97%), Positives = 147/148 (99%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS
Sbjct: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
RKL+LPAKLSP SR+GDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAE+VIRHFDGCKA
Sbjct: 61 RKLFLPAKLSPASRDGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAELVIRHFDGCKA 120
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILA 148
DLVVCDGAPDVTGLHDMDEFVQSQLILA
Sbjct: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILA 148
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255581073|ref|XP_002531352.1| ribosomal RNA methyltransferase, putative [Ricinus communis] gi|223529050|gb|EEF31036.1| ribosomal RNA methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 294 bits (752), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 143/148 (96%), Positives = 146/148 (98%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS
Sbjct: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
RKLYLPAKL+ DSR+ +LPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA
Sbjct: 61 RKLYLPAKLTQDSRDDNLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILA 148
DLVVCDGAPDVTGLHDMDEFVQSQLILA
Sbjct: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILA 148
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449439914|ref|XP_004137730.1| PREDICTED: putative ribosomal RNA methyltransferase 1-like [Cucumis sativus] gi|449483463|ref|XP_004156599.1| PREDICTED: putative ribosomal RNA methyltransferase 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 293 bits (750), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 142/148 (95%), Positives = 146/148 (98%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS
Sbjct: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
RKLYLPAKLSPD ++G+LPLIVAIDLQPMAPIEGVI+VQGDITNARTAEVVIRHFDGCKA
Sbjct: 61 RKLYLPAKLSPDLKDGELPLIVAIDLQPMAPIEGVIEVQGDITNARTAEVVIRHFDGCKA 120
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILA 148
DLVVCDGAPDVTGLHDMDEFVQ QLILA
Sbjct: 121 DLVVCDGAPDVTGLHDMDEFVQFQLILA 148
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30679168|ref|NP_851026.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gi|26983822|gb|AAN86163.1| putative cell division protein [Arabidopsis thaliana] gi|332002931|gb|AED90314.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 293 bits (750), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 142/148 (95%), Positives = 146/148 (98%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS
Sbjct: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
R+LYLPAK S +S++GDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA
Sbjct: 61 RQLYLPAKSSAESKDGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILA 148
DLVVCDGAPDVTGLHDMDEFVQSQLILA
Sbjct: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILA 148
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357446585|ref|XP_003593568.1| rRNA methyltransferase-like protein [Medicago truncatula] gi|355482616|gb|AES63819.1| rRNA methyltransferase-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 293 bits (749), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 141/148 (95%), Positives = 147/148 (99%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS
Sbjct: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
RKLYLPAKL+PD+++ +LPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA
Sbjct: 61 RKLYLPAKLAPDAKDENLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILA 148
+LVVCDGAPDVTGLHDMDEFVQSQLILA
Sbjct: 121 NLVVCDGAPDVTGLHDMDEFVQSQLILA 148
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297806107|ref|XP_002870937.1| hypothetical protein ARALYDRAFT_486954 [Arabidopsis lyrata subsp. lyrata] gi|297316774|gb|EFH47196.1| hypothetical protein ARALYDRAFT_486954 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 292 bits (748), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 142/148 (95%), Positives = 145/148 (97%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS
Sbjct: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
R+LYLPAK S +S+EG LPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA
Sbjct: 61 RQLYLPAKSSAESKEGGLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILA 148
DLVVCDGAPDVTGLHDMDEFVQSQLILA
Sbjct: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILA 148
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|6759446|emb|CAB69851.1| cell division-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 292 bits (747), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 142/148 (95%), Positives = 146/148 (98%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS
Sbjct: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
R+LYLPAK S +S++GDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA
Sbjct: 61 RQLYLPAKSSAESKDGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILA 148
DLVVCDGAPDVTGLHDMDEFVQSQLILA
Sbjct: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILA 148
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242066866|ref|XP_002454722.1| hypothetical protein SORBIDRAFT_04g036220 [Sorghum bicolor] gi|241934553|gb|EES07698.1| hypothetical protein SORBIDRAFT_04g036220 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 292 bits (747), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 140/149 (93%), Positives = 144/149 (96%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MGKAS+DKRDIYYRKAKEEGWRARSAFKLLQID+EFNIF GVKRVVDLCAAPGSWSQVLS
Sbjct: 1 MGKASKDKRDIYYRKAKEEGWRARSAFKLLQIDQEFNIFHGVKRVVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
R LY+PAK SPD +EGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA
Sbjct: 61 RNLYVPAKQSPDCKEGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAV 149
DLVVCDGAPDVTGLHDMDEFVQSQLILA
Sbjct: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAA 149
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115469828|ref|NP_001058513.1| Os06g0704900 [Oryza sativa Japonica Group] gi|53792764|dbj|BAD53799.1| putative FtsJ homolog 1 isoform b [Oryza sativa Japonica Group] gi|113596553|dbj|BAF20427.1| Os06g0704900 [Oryza sativa Japonica Group] gi|215736929|dbj|BAG95858.1| unnamed protein product [Oryza sativa Japonica Group] gi|218198852|gb|EEC81279.1| hypothetical protein OsI_24387 [Oryza sativa Indica Group] gi|222636192|gb|EEE66324.1| hypothetical protein OsJ_22564 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 291 bits (746), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 140/149 (93%), Positives = 144/149 (96%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MGKAS+DKRDIYYRKAKEEGWRARSAFKLLQID+EFNIF GVKRVVDLCAAPGSWSQVLS
Sbjct: 1 MGKASKDKRDIYYRKAKEEGWRARSAFKLLQIDQEFNIFHGVKRVVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
R LY+PAK SPD +EGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA
Sbjct: 61 RNLYVPAKQSPDCKEGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAV 149
DLVVCDGAPDVTGLHDMDEFVQSQLILA
Sbjct: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAA 149
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356549337|ref|XP_003543050.1| PREDICTED: putative ribosomal RNA methyltransferase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 291 bits (745), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 140/147 (95%), Positives = 146/147 (99%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFN+FEGVKRVVDLCAAPGSWSQVLS
Sbjct: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNLFEGVKRVVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
RKLYLPAKL+PD+++ +LPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA
Sbjct: 61 RKLYLPAKLAPDAKDENLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLIL 147
DLVVCDGAPDVTGLHDMDEFVQSQLIL
Sbjct: 121 DLVVCDGAPDVTGLHDMDEFVQSQLIL 147
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 179 | ||||||
| TAIR|locus:2150069 | 309 | AT5G01230 [Arabidopsis thalian | 0.826 | 0.478 | 0.959 | 1.2e-72 | |
| DICTYBASE|DDB_G0280483 | 270 | fsjA "rRNA (uridine-2'-O-)-met | 0.787 | 0.522 | 0.695 | 4e-51 | |
| ZFIN|ZDB-GENE-041114-83 | 323 | ftsj1 "FtsJ homolog 1 (E. coli | 0.787 | 0.436 | 0.702 | 1.7e-50 | |
| RGD|1561061 | 326 | Ftsj1 "FtsJ RNA methyltransfer | 0.770 | 0.423 | 0.668 | 9.5e-50 | |
| WB|WBGene00011281 | 337 | R74.7 [Caenorhabditis elegans | 0.776 | 0.412 | 0.682 | 4.1e-49 | |
| UNIPROTKB|E2REZ9 | 329 | FTSJ1 "Uncharacterized protein | 0.770 | 0.419 | 0.655 | 5.2e-49 | |
| UNIPROTKB|A0JNB8 | 307 | FTSJ1 "Uncharacterized protein | 0.770 | 0.449 | 0.655 | 6.7e-49 | |
| UNIPROTKB|Q9UET6 | 329 | FTSJ1 "Putative tRNA (cytidine | 0.770 | 0.419 | 0.648 | 2.9e-48 | |
| POMBASE|SPAC4F10.03c | 285 | SPAC4F10.03c "tRNA 2'-O-ribose | 0.804 | 0.505 | 0.633 | 3.7e-48 | |
| FB|FBgn0038471 | 302 | CG5220 [Drosophila melanogaste | 0.860 | 0.509 | 0.628 | 6e-48 |
| TAIR|locus:2150069 AT5G01230 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 734 (263.4 bits), Expect = 1.2e-72, P = 1.2e-72
Identities = 142/148 (95%), Positives = 146/148 (98%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS
Sbjct: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
R+LYLPAK S +S++GDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA
Sbjct: 61 RQLYLPAKSSAESKDGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILA 148
DLVVCDGAPDVTGLHDMDEFVQSQLILA
Sbjct: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILA 148
|
|
| DICTYBASE|DDB_G0280483 fsjA "rRNA (uridine-2'-O-)-methyltransferase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
Identities = 103/148 (69%), Positives = 124/148 (83%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MGK+S+DKRDIYYRKAKEEGWRARSAFKL+QIDEE+ IFEGVKRVVDLCAAPGSWSQVLS
Sbjct: 1 MGKSSKDKRDIYYRKAKEEGWRARSAFKLIQIDEEYQIFEGVKRVVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
R++Y K PD + IVA+DLQ MAP++GV+Q++GDIT T++ +I HFDG A
Sbjct: 61 RRIYGDGK-DPDVK------IVAVDLQEMAPLKGVVQIKGDITKYETSKQIISHFDGSLA 113
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILA 148
DL++ DGAPDVTGLHD+D + QSQLIL+
Sbjct: 114 DLIISDGAPDVTGLHDIDFYGQSQLILS 141
|
|
| ZFIN|ZDB-GENE-041114-83 ftsj1 "FtsJ homolog 1 (E. coli)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
Identities = 104/148 (70%), Positives = 121/148 (81%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MG++S+DKRDIYYR AKEEGWRARSAFKLLQ+DEEF +F GV R VDLCAAPGSWSQVLS
Sbjct: 1 MGRSSKDKRDIYYRLAKEEGWRARSAFKLLQLDEEFKLFRGVSRAVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
RKL D E ++ IVA+DLQ MAP+ GV Q+QGDIT TAE +IRHF+G A
Sbjct: 61 RKLR-----GKDKSE-EVK-IVAVDLQAMAPLPGVTQIQGDITKISTAEEIIRHFEGESA 113
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILA 148
DLVVCDGAPDVTGLHD+DE++Q+QL+LA
Sbjct: 114 DLVVCDGAPDVTGLHDVDEYIQAQLLLA 141
|
|
| RGD|1561061 Ftsj1 "FtsJ RNA methyltransferase homolog 1 (E. coli)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
Identities = 99/148 (66%), Positives = 121/148 (81%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MG+ S+DKRD+YYR AKE+GWRARSAFKLLQ+DEEF +F+GVKR VDLCAAPGSWSQVLS
Sbjct: 1 MGRTSKDKRDVYYRLAKEKGWRARSAFKLLQLDEEFQLFKGVKRAVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
+K+ G +VA+DLQ MAP+ GVIQ+QGDIT TA+ +I+HF+GC A
Sbjct: 61 QKV-------GGQSSGQ---VVAVDLQAMAPLPGVIQIQGDITQLSTAKEIIQHFEGCPA 110
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILA 148
DLVVCDGAPDVTGLHD+DE++Q+QL+LA
Sbjct: 111 DLVVCDGAPDVTGLHDVDEYMQAQLLLA 138
|
|
| WB|WBGene00011281 R74.7 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
Identities = 101/148 (68%), Positives = 120/148 (81%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MGK SRDKRDIYYR AKE WRARSAFKL+QID+EF I +GV+R VDLCAAPGSWSQVLS
Sbjct: 1 MGKTSRDKRDIYYRLAKENKWRARSAFKLMQIDDEFQILKGVRRAVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
++LY + +E IVAIDLQPMAPI GVIQ+QGDIT+ TA VI+HF G K+
Sbjct: 61 KRLY------EEDQEAK---IVAIDLQPMAPIPGVIQLQGDITSVDTANQVIKHFSGEKS 111
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILA 148
D+V+CDGAPDVTG+H +DEF+Q++LILA
Sbjct: 112 DIVICDGAPDVTGIHSLDEFMQAELILA 139
|
|
| UNIPROTKB|E2REZ9 FTSJ1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
Identities = 97/148 (65%), Positives = 121/148 (81%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MG+ S+DKRD+YYR AKE GWRARSAFKLLQ+DEEF++F+GV R VDLCAAPGSWSQVLS
Sbjct: 1 MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDEEFHLFQGVTRAVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
+K+ +G +VA+DLQ MAP+ GV+Q+QGDIT TA+ +I+HF+GC A
Sbjct: 61 QKI---------GGQGS-GHVVAVDLQAMAPLPGVLQIQGDITQLSTAKEIIQHFEGCPA 110
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILA 148
DLVVCDGAPDVTGLHD+DE++Q+QL+LA
Sbjct: 111 DLVVCDGAPDVTGLHDVDEYMQAQLLLA 138
|
|
| UNIPROTKB|A0JNB8 FTSJ1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
Identities = 97/148 (65%), Positives = 120/148 (81%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MG+ S+DKRD+YYR AKE GWRARSAFKLLQ+DEEF +F+GV R VDLCAAPGSWSQVLS
Sbjct: 1 MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDEEFQLFQGVTRAVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
+K+ +G +VA+DLQ MAP+ GV+Q+QGDIT TA+ +I+HF+GC A
Sbjct: 61 QKI---------GGQGS-GHVVAVDLQAMAPLPGVLQIQGDITQLSTAKEIIQHFEGCPA 110
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILA 148
DLVVCDGAPDVTGLHD+DE++Q+QL+LA
Sbjct: 111 DLVVCDGAPDVTGLHDVDEYMQAQLLLA 138
|
|
| UNIPROTKB|Q9UET6 FTSJ1 "Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
Identities = 96/148 (64%), Positives = 119/148 (80%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MG+ S+DKRD+YYR AKE GWRARSAFKLLQ+D+EF +F+GV R VDLCAAPGSWSQVLS
Sbjct: 1 MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
+K+ +G +VA+DLQ MAP+ GV+Q+QGDIT TA+ +I+HF GC A
Sbjct: 61 QKI---------GGQGS-GHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPA 110
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILA 148
DLVVCDGAPDVTGLHD+DE++Q+QL+LA
Sbjct: 111 DLVVCDGAPDVTGLHDVDEYMQAQLLLA 138
|
|
| POMBASE|SPAC4F10.03c SPAC4F10.03c "tRNA 2'-O-ribose methyltransferase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
Identities = 95/150 (63%), Positives = 122/150 (81%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MG++S+DKRD YYR AKE+GWRARSAFKLLQ++E+FN+FEG KRVVDLCAAPGSWSQVLS
Sbjct: 1 MGRSSKDKRDAYYRLAKEQGWRARSAFKLLQLNEQFNLFEGAKRVVDLCAAPGSWSQVLS 60
Query: 61 RKLY--LPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGC 118
R+L + ++ D + P+IVA+DLQPMAPI+GV +Q DIT+ T +++ HF
Sbjct: 61 RELLKNIDTSIAADEK----PMIVAVDLQPMAPIDGVCTLQLDITHPNTLSIILSHFGNE 116
Query: 119 KADLVVCDGAPDVTGLHDMDEFVQSQLILA 148
ADLVV DGAPDVTGLHD+DE++Q+Q++LA
Sbjct: 117 PADLVVSDGAPDVTGLHDLDEYIQAQILLA 146
|
|
| FB|FBgn0038471 CG5220 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
Identities = 100/159 (62%), Positives = 123/159 (77%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MGK S+DKRDIYYR+AK+EGWRARSAFKLL +DE + I GV+R VDLCAAPGSWSQVLS
Sbjct: 1 MGKTSKDKRDIYYRQAKDEGWRARSAFKLLHVDEAYGILNGVQRAVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGC-K 119
RKLY + D + + I+A+DLQ MAPI G++Q+QGDIT TAE +I HF G K
Sbjct: 61 RKLYDTCET--DDEKSAVK-IIAVDLQAMAPIRGILQLQGDITKQSTAEAIIGHFGGNEK 117
Query: 120 ADLVVCDGAPDVTGLHDMDEFVQSQLILA-VSIQFFIYE 157
A LVVCDGAPDVTG+H+MDE++Q QL++A +SI + E
Sbjct: 118 AQLVVCDGAPDVTGVHEMDEYMQHQLLVAALSIATCVLE 156
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.766 |
| 4th Layer | 2.1.1.166 | 0.824 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 179 | |||
| COG0293 | 205 | COG0293, FtsJ, 23S rRNA methylase [Translation, ri | 1e-56 | |
| pfam01728 | 177 | pfam01728, FtsJ, FtsJ-like methyltransferase | 1e-43 | |
| TIGR00438 | 188 | TIGR00438, rrmJ, cell division protein FtsJ | 3e-32 | |
| PRK11188 | 209 | PRK11188, rrmJ, 23S rRNA methyltransferase J; Prov | 1e-19 | |
| COG1189 | 245 | COG1189, COG1189, Predicted rRNA methylase [Transl | 2e-04 |
| >gnl|CDD|223370 COG0293, FtsJ, 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 177 bits (450), Expect = 1e-56
Identities = 60/145 (41%), Positives = 86/145 (59%), Gaps = 12/145 (8%)
Query: 5 SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLY 64
+ RD YY+KAK+EG+R+R+A+KLL+++E+F +F+ VVDL AAPG WSQV ++KL
Sbjct: 9 AEHLRDPYYKKAKKEGYRSRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKL- 67
Query: 65 LPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVV 124
G IVA+D+ PM PI GVI +QGDIT+ T E ++ G D+V+
Sbjct: 68 -----------GAGGKIVAVDILPMKPIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVL 116
Query: 125 CDGAPDVTGLHDMDEFVQSQLILAV 149
D AP+ +G +D L
Sbjct: 117 SDMAPNTSGNRSVDHARSMYLCELA 141
|
Length = 205 |
| >gnl|CDD|216666 pfam01728, FtsJ, FtsJ-like methyltransferase | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 1e-43
Identities = 56/130 (43%), Positives = 79/130 (60%), Gaps = 15/130 (11%)
Query: 21 WRARSAFKLLQIDEEFNIFEGV-KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP 79
+ +R+A+KLL+IDE F + G K V+DL AAPG +SQVL + G
Sbjct: 1 YVSRAAYKLLEIDERFGLKPGKGKTVLDLGAAPGGFSQVLLER-------------GGAG 47
Query: 80 LIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDE 139
+VA+DL PM PI+GV ++GDIT+ T E + G K DLV+ DGAP+V+G+ + D
Sbjct: 48 KVVAVDLGPMEPIQGVYFLRGDITDPETLEKLRELLPG-KVDLVLSDGAPNVSGIENTDS 106
Query: 140 FVQSQLILAV 149
F+ QL+LA
Sbjct: 107 FISLQLVLAA 116
|
This family consists of FtsJ from various bacterial and archaeal sources FtsJ is a methyltransferase, but actually has no effect on cell division. FtsJ's substrate is the 23S rRNA. The 1.5 A crystal structure of FtsJ in complex with its cofactor S-adenosylmethionine revealed that FtsJ has a methyltransferase fold. This family also includes the N terminus of flaviviral NS5 protein. It has been hypothesised that the N-terminal domain of NS5 is a methyltransferase involved in viral RNA capping. Length = 177 |
| >gnl|CDD|232976 TIGR00438, rrmJ, cell division protein FtsJ | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 3e-32
Identities = 49/129 (37%), Positives = 77/129 (59%), Gaps = 12/129 (9%)
Query: 10 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKL 69
D YY+KAK+E +R+R++FKLLQ++++F + + V+DL AAPG WSQV ++
Sbjct: 1 DFYYQKAKKEKYRSRASFKLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQV------ 54
Query: 70 SPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAP 129
G ++A+DLQPM PIE V ++GD T+ + K D+V+ D AP
Sbjct: 55 ------GGKGRVIAVDLQPMKPIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAP 108
Query: 130 DVTGLHDMD 138
+++G D+D
Sbjct: 109 NISGYWDID 117
|
Methylates the 23S rRNA. Previously known as cell division protein ftsJ.// Trusted cutoff too high? [SS 10/1/04] [Protein synthesis, tRNA and rRNA base modification]. Length = 188 |
| >gnl|CDD|183025 PRK11188, rrmJ, 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 1e-19
Identities = 42/129 (32%), Positives = 69/129 (53%), Gaps = 12/129 (9%)
Query: 10 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKL 69
D Y ++A+++G R+R+ FKL +I + +F+ VVDL AAPG WSQ ++
Sbjct: 20 DKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQI------ 73
Query: 70 SPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAP 129
GD ++A D+ PM PI GV +QGD + + ++ K +V+ D AP
Sbjct: 74 ------GDKGRVIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAP 127
Query: 130 DVTGLHDMD 138
+++G +D
Sbjct: 128 NMSGTPAVD 136
|
Length = 209 |
| >gnl|CDD|224110 COG1189, COG1189, Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 2e-04
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 15 KAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRK 62
K +E+ + +R KL + EEF + K V+D+ ++ G ++ VL ++
Sbjct: 53 KGEEQPYVSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQR 100
|
Length = 245 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 179 | |||
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 100.0 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 100.0 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 100.0 | |
| KOG1098 | 780 | consensus Putative SAM-dependent rRNA methyltransf | 100.0 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.97 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 99.97 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.9 | |
| KOG3673 | 845 | consensus FtsJ-like RNA methyltransferase [RNA pro | 99.89 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 99.62 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.32 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 99.3 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.16 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 99.11 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.1 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.08 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 99.05 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.03 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 99.01 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.98 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.95 | |
| PRK04266 | 226 | fibrillarin; Provisional | 98.93 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 98.93 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 98.93 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 98.91 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 98.9 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.9 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.88 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 98.88 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.88 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 98.87 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 98.87 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 98.85 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 98.81 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 98.79 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 98.75 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 98.73 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 98.73 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 98.73 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 98.73 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 98.71 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 98.69 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 98.69 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 98.69 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 98.68 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 98.67 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 98.67 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 98.64 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 98.63 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 98.61 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 98.61 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 98.6 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.58 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 98.56 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 98.53 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 98.52 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 98.51 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 98.49 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 98.48 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.48 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 98.47 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 98.47 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 98.46 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.46 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 98.45 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 98.43 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 98.43 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 98.42 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 98.4 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 98.39 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 98.39 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.38 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.36 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.35 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 98.35 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 98.35 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 98.35 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.34 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.33 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 98.33 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 98.31 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.31 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 98.31 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.31 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 98.3 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 98.3 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 98.29 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 98.28 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 98.27 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.27 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.26 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.26 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 98.25 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.24 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 98.23 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.23 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.21 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 98.2 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.19 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.19 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.19 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.18 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 98.17 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 98.17 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.16 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 98.16 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.15 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.14 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.14 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.11 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.1 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.1 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.09 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 98.09 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.08 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 98.08 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 98.08 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 98.06 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.06 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.04 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 98.04 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 98.04 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 98.03 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.02 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.02 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 98.01 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 98.01 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 97.98 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 97.97 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 97.97 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 97.95 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 97.94 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 97.93 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 97.92 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.91 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 97.88 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 97.87 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 97.87 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.84 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 97.82 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 97.82 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 97.79 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 97.77 | |
| PLN02366 | 308 | spermidine synthase | 97.76 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 97.75 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 97.74 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 97.72 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 97.71 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 97.7 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 97.69 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.67 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.66 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 97.65 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 97.65 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 97.65 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 97.64 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 97.63 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.6 | |
| PLN02476 | 278 | O-methyltransferase | 97.59 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 97.56 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 97.56 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 97.55 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 97.55 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 97.54 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.52 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 97.5 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.47 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 97.45 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 97.43 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 97.42 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.39 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.38 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 97.36 | |
| KOG3674 | 696 | consensus FtsJ-like RNA methyltransferase [RNA pro | 97.34 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.33 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.3 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 97.29 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.2 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 97.16 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.16 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 97.16 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 97.15 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 97.08 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 97.05 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 97.03 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 96.99 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 96.99 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 96.95 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 96.95 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 96.87 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 96.87 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 96.84 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 96.82 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 96.77 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 96.77 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 96.73 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 96.72 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 96.72 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 96.72 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 96.71 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 96.58 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 96.55 | |
| KOG2360 | 413 | consensus Proliferation-associated nucleolar prote | 96.52 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 96.5 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 96.39 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 96.35 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 96.3 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 96.29 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 96.28 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 96.26 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 96.22 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 96.17 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 96.11 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 96.03 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 96.03 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 95.99 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 95.75 | |
| PLN02823 | 336 | spermine synthase | 95.71 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 95.7 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 95.69 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 95.65 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 95.63 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 95.54 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 95.48 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 95.28 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 95.19 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 95.12 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 95.07 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 94.98 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 94.94 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 94.91 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 94.82 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 94.8 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 94.63 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 94.55 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 94.51 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 94.42 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 94.39 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 94.16 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 93.87 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 93.07 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 92.98 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 92.9 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 92.69 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 92.56 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 91.89 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 91.82 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 91.27 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 90.7 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 90.1 | |
| PHA01634 | 156 | hypothetical protein | 89.05 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 89.02 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 88.56 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 88.5 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 88.38 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 87.85 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 87.77 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 87.72 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 87.58 | |
| PF06460 | 299 | NSP13: Coronavirus NSP13; InterPro: IPR009461 This | 86.91 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 86.57 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 86.14 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 85.97 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 85.77 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 85.66 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 85.58 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 85.51 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 85.18 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 84.38 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 84.18 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 84.17 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 83.95 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 83.78 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 83.22 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 83.03 | |
| PRK12748 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 82.8 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 82.52 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 82.21 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 81.97 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 81.74 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 81.31 | |
| PHA03108 | 300 | poly(A) polymerase small subunit; Provisional | 81.21 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 80.92 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 80.85 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 80.85 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 80.78 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 80.75 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 80.51 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 80.02 |
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-43 Score=286.18 Aligned_cols=168 Identities=72% Similarity=1.093 Sum_probs=151.2
Q ss_pred CCCCcCCCCchHHHHHHhhCCcchhhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCe
Q 030299 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPL 80 (179)
Q Consensus 1 ~~~~~~~~~d~y~~~a~~~~~~sRaa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~ 80 (179)
||++||..||.|||+||++|||.|+||||+++|+.|++++.-.+|+||||+||+|||+|.+++..+...+ ++.+-+
T Consensus 1 MGktskDKRDiYYRlAKe~gwRARSAFKLlqideef~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~----~~~~~k 76 (294)
T KOG1099|consen 1 MGKTSKDKRDIYYRLAKENGWRARSAFKLLQIDEEFQIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSS----GERDKK 76 (294)
T ss_pred CCCccchhhHHHHHHHHhccchHHhHHHHhhhhhhhhHHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCc----chhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999875321111 122237
Q ss_pred EEEEeCCCCCCCCCeeEEeccccchhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHHHH-------
Q 030299 81 IVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSIQF------- 153 (179)
Q Consensus 81 VvavD~~~~~~~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~~~------- 153 (179)
|||||++||.|++||..+|+|||...+.+++.++|.+++.|+|+|||+|+++|..+.|+++|.+|+++||+..
T Consensus 77 IVaVDLQ~MaPI~GV~qlq~DIT~~stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~G 156 (294)
T KOG1099|consen 77 IVAVDLQPMAPIEGVIQLQGDITSASTAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPG 156 (294)
T ss_pred EEEEecccCCccCceEEeecccCCHhHHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999965
Q ss_pred --HH--------HHHHH-HHHHhhceEEEe
Q 030299 154 --FI--------YELVF-CLRQLLQYVILD 172 (179)
Q Consensus 154 --~~--------~~~~~-~~~~~f~~v~~~ 172 (179)
|+ .+++| +|+.+|++|.+.
T Consensus 157 g~FVaKifRg~~tslLysql~~ff~kv~~~ 186 (294)
T KOG1099|consen 157 GSFVAKIFRGRDTSLLYSQLRKFFKKVTCA 186 (294)
T ss_pred CeeehhhhccCchHHHHHHHHHHhhceeee
Confidence 21 56775 889999999864
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=273.50 Aligned_cols=157 Identities=41% Similarity=0.609 Sum_probs=148.2
Q ss_pred cCCCCchHHHHHHhhCCcchhhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEE
Q 030299 5 SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAI 84 (179)
Q Consensus 5 ~~~~~d~y~~~a~~~~~~sRaa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~Vvav 84 (179)
.+++.|+|++.|+++||||||+|||.||+++|+++++|++|+||||+||||||+++++++. .+.|+|+
T Consensus 9 ~~~~~D~Y~~~Ak~~gyRSRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~------------~~~ivav 76 (205)
T COG0293 9 AEHLRDPYYKKAKKEGYRSRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGA------------GGKIVAV 76 (205)
T ss_pred HHhhcCHHHHHHhhccccchHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCC------------CCcEEEE
Confidence 5699999999999999999999999999999999999999999999999999999999974 5779999
Q ss_pred eCCCCCCCCCeeEEeccccchhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHHHHH----------
Q 030299 85 DLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSIQFF---------- 154 (179)
Q Consensus 85 D~~~~~~~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~~~~---------- 154 (179)
|+.||+|++||.++|+|+++.++.+.|.+.+++.++|+|+|||+|+++|.|+.||..+..|+..|+.++.
T Consensus 77 Di~p~~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv 156 (205)
T COG0293 77 DILPMKPIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFV 156 (205)
T ss_pred ECcccccCCCceEEeeeccCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEE
Confidence 9999999999999999999999999999999988899999999999999999999999999999998762
Q ss_pred --------HHHHHHHHHHhhceEEEee
Q 030299 155 --------IYELVFCLRQLLQYVILDG 173 (179)
Q Consensus 155 --------~~~~~~~~~~~f~~v~~~~ 173 (179)
...+++.++++|++|.+..
T Consensus 157 ~K~fqg~~~~~~l~~~~~~F~~v~~~K 183 (205)
T COG0293 157 AKVFQGEDFEDLLKALRRLFRKVKIFK 183 (205)
T ss_pred EEEEeCCCHHHHHHHHHHhhceeEEec
Confidence 2678999999999999764
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=250.53 Aligned_cols=157 Identities=30% Similarity=0.462 Sum_probs=144.2
Q ss_pred cCCCCchHHHHHHhhCCcchhhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEE
Q 030299 5 SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAI 84 (179)
Q Consensus 5 ~~~~~d~y~~~a~~~~~~sRaa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~Vvav 84 (179)
.||.+|||++.|+.+.|||||||||+||++||++|+|+++|||+||+||.|||++.++.++ .+.|+||
T Consensus 33 ~Rql~Dpy~kkAkv~NyR~RsAFKLiEindKy~~l~p~~~VlD~G~APGsWsQVavqr~~p------------~g~v~gV 100 (232)
T KOG4589|consen 33 TRQLKDPYVKKAKVQNYRSRSAFKLIEINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNP------------NGMVLGV 100 (232)
T ss_pred HHhccCHHHHHHHHhhhhhhhhhhheeehhhccccCCCCEEEEccCCCChHHHHHHHhhCC------------CceEEEE
Confidence 4689999999999999999999999999999999999999999999999999999999964 7999999
Q ss_pred eCCCCCCCCCeeEEec-cccchhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHHHHH---------
Q 030299 85 DLQPMAPIEGVIQVQG-DITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSIQFF--------- 154 (179)
Q Consensus 85 D~~~~~~~~~v~~i~g-Di~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~~~~--------- 154 (179)
|+.++.|++|+.++++ |++|+++..+|.+.++++++|+|+|||+|+++|.+..||..+++||..+|..++
T Consensus 101 Dllh~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~f 180 (232)
T KOG4589|consen 101 DLLHIEPPEGATIIQGNDVTDPETYRKIFEALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSF 180 (232)
T ss_pred eeeeccCCCCcccccccccCCHHHHHHHHHhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEE
Confidence 9999999999999998 999999999999999999999999999999999999999999999999986542
Q ss_pred ---------HHHHHHHHHHhhceEEEee
Q 030299 155 ---------IYELVFCLRQLLQYVILDG 173 (179)
Q Consensus 155 ---------~~~~~~~~~~~f~~v~~~~ 173 (179)
...+.=-|...|++|.+.+
T Consensus 181 vcK~w~g~e~~~l~r~l~~~f~~Vk~vK 208 (232)
T KOG4589|consen 181 VCKLWDGSEEALLQRRLQAVFTNVKKVK 208 (232)
T ss_pred EEEEecCCchHHHHHHHHHHhhhcEeeC
Confidence 1345566788888887654
|
|
| >KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=278.35 Aligned_cols=160 Identities=40% Similarity=0.606 Sum_probs=149.3
Q ss_pred CCCC---cCCCCchHHHHHHhhCCcchhhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCC
Q 030299 1 MGKA---SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGD 77 (179)
Q Consensus 1 ~~~~---~~~~~d~y~~~a~~~~~~sRaa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~ 77 (179)
|||+ +++|.|.||++|++.||||||||||++|+.+|.+|.++..||||||+||||.|++.+.+|.
T Consensus 1 MGKk~~~gk~r~Dk~Y~lAke~GyrsRsaFKLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv------------ 68 (780)
T KOG1098|consen 1 MGKKKKSGKGRLDKYYRLAKELGYRSRSAFKLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPV------------ 68 (780)
T ss_pred CCccccCCCccchHHHHHHHHhchhHHHHHHHHHHHHHhccccccchheeeccCCcHHHHHHHHhCCC------------
Confidence 8974 7899999999999999999999999999999999999999999999999999999999986
Q ss_pred CCeEEEEeCCCCCCCCCeeEEeccccchhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHHHH--H-
Q 030299 78 LPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSIQF--F- 154 (179)
Q Consensus 78 ~~~VvavD~~~~~~~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~~~--~- 154 (179)
++.|||||+.|+.|++||...+.||+..+....+.+.+...++|+||+||+||++|.|..|.+.|..|.+.||+.+ |
T Consensus 69 ~slivGvDl~pikp~~~c~t~v~dIttd~cr~~l~k~l~t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l 148 (780)
T KOG1098|consen 69 GSLIVGVDLVPIKPIPNCDTLVEDITTDECRSKLRKILKTWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFL 148 (780)
T ss_pred CceEEEeeeeecccCCccchhhhhhhHHHHHHHHHHHHHhCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHH
Confidence 7999999999999999999999999998888778777777889999999999999999999999999999999975 1
Q ss_pred ------H---------HHHHHHHHHhhceEEEe
Q 030299 155 ------I---------YELVFCLRQLLQYVILD 172 (179)
Q Consensus 155 ------~---------~~~~~~~~~~f~~v~~~ 172 (179)
+ ..|+|.+.|||.+|...
T Consensus 149 ~~~g~fvtkvfrs~dy~~ll~v~~qLf~kv~~t 181 (780)
T KOG1098|consen 149 AKGGTFVTKVFRSEDYNGLLRVFGQLFKKVEAT 181 (780)
T ss_pred HhcCccccccccCCcchHHHHHHHHHHHHHHhc
Confidence 1 68999999999998754
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-30 Score=208.25 Aligned_cols=158 Identities=28% Similarity=0.378 Sum_probs=138.3
Q ss_pred cCCCCchHHHHHHhhCCcchhhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEE
Q 030299 5 SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAI 84 (179)
Q Consensus 5 ~~~~~d~y~~~a~~~~~~sRaa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~Vvav 84 (179)
.|+.+|+|++.++..+||+|++|||.|+++++++++++.+|||||||||+|+++++++.++ .+.|+|+
T Consensus 15 ~~~~~d~~~~~~~~~~~~~r~~~kl~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~------------~~~V~aV 82 (209)
T PRK11188 15 QEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGD------------KGRVIAC 82 (209)
T ss_pred HHhhcCHHHHHHhhcCCchhHHHhhHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCC------------CceEEEE
Confidence 4578899999999999999999999999999999999999999999999999999999753 5799999
Q ss_pred eCCCCCCCCCeeEEeccccchhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHHHHH----------
Q 030299 85 DLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSIQFF---------- 154 (179)
Q Consensus 85 D~~~~~~~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~~~~---------- 154 (179)
|+++|.+.++++++++|+++.++..++.+.+.+.+||+|+||++|..+|.+..|+..+..+...+|..+.
T Consensus 83 Di~~~~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~v 162 (209)
T PRK11188 83 DILPMDPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFV 162 (209)
T ss_pred ecccccCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 9999988899999999999988888887777778999999999999999888787666666666666431
Q ss_pred --------HHHHHHHHHHhhceEEEeee
Q 030299 155 --------IYELVFCLRQLLQYVILDGS 174 (179)
Q Consensus 155 --------~~~~~~~~~~~f~~v~~~~~ 174 (179)
+..+++.+++.|+.|++..-
T Consensus 163 i~~~~~~~~~~~l~~l~~~f~~v~~~Kp 190 (209)
T PRK11188 163 VKVFQGEGFDEYLREIRSLFTKVKVRKP 190 (209)
T ss_pred EEEecCcCHHHHHHHHHhCceEEEEECC
Confidence 24577999999999998653
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=206.71 Aligned_cols=142 Identities=40% Similarity=0.604 Sum_probs=118.0
Q ss_pred CcchhhhcHHhHHHHhCCCCCC--CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCeeEE
Q 030299 21 WRARSAFKLLQIDEEFNIFEGV--KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQV 98 (179)
Q Consensus 21 ~~sRaa~KL~eid~~~~ll~~g--~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~~~~v~~i 98 (179)
|||||||||.|++++|++++++ .+||||||+|||||++++++..+ .++|+|+|+.++.+++++.++
T Consensus 1 yvsRa~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~------------~~~v~avDl~~~~~~~~~~~i 68 (181)
T PF01728_consen 1 YVSRAAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGP------------AGRVVAVDLGPMDPLQNVSFI 68 (181)
T ss_dssp SSSTHHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTT------------EEEEEEEESSSTGS-TTEEBT
T ss_pred CCCHHHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccc------------cceEEEEeccccccccceeee
Confidence 7999999999999999988765 89999999999999999998732 589999999999989999999
Q ss_pred eccccchhhHHHHHhhcCC--CCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHHHHH------------------HHHH
Q 030299 99 QGDITNARTAEVVIRHFDG--CKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSIQFF------------------IYEL 158 (179)
Q Consensus 99 ~gDi~~~~~~~~l~~~~~~--~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~~~~------------------~~~~ 158 (179)
++|+++.++.+.+.+.+.+ +++|+|+|||+|+++|.++.|++.+.+|++.+|..++ ...+
T Consensus 69 ~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~ 148 (181)
T PF01728_consen 69 QGDITNPENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEEL 148 (181)
T ss_dssp TGGGEEEEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHH
T ss_pred ecccchhhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHH
Confidence 9999999888888887653 6899999999999999999999999999999998652 1478
Q ss_pred HHHHHHhhceEEEeee
Q 030299 159 VFCLRQLLQYVILDGS 174 (179)
Q Consensus 159 ~~~~~~~f~~v~~~~~ 174 (179)
++.++++|++|.+...
T Consensus 149 ~~~l~~~F~~v~~~Kp 164 (181)
T PF01728_consen 149 IYLLKRCFSKVKIVKP 164 (181)
T ss_dssp HHHHHHHHHHEEEEE-
T ss_pred HHHHHhCCeEEEEEEC
Confidence 8999999999998764
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-22 Score=159.67 Aligned_cols=152 Identities=36% Similarity=0.568 Sum_probs=124.2
Q ss_pred chHHHHHHhhCCcchhhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC
Q 030299 10 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (179)
Q Consensus 10 d~y~~~a~~~~~~sRaa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~ 89 (179)
|.||+.+++++||+|++|||.++++++..+++|.+|||+|||||+++..++.+... .++|+|+|++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~------------~~~v~~vDis~~ 68 (188)
T TIGR00438 1 DFYYQKAKKEKYRSRASFKLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGG------------KGRVIAVDLQPM 68 (188)
T ss_pred CHHHHHHhhcCCchhHHHHHHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCC------------CceEEEEecccc
Confidence 57899999999999999999999999999999999999999999999999988742 478999999997
Q ss_pred CCCCCeeEEeccccchhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHHHHH---------------
Q 030299 90 APIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSIQFF--------------- 154 (179)
Q Consensus 90 ~~~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~~~~--------------- 154 (179)
...+++.++++|+.+.+....+.+.+++.+||+|++|++|+.+|.|..++..+..+...++..+.
T Consensus 69 ~~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 69 KPIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred ccCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 66678999999999877666666666667899999999998899999988665444444443220
Q ss_pred ---HHHHHHHHHHhhceEEEee
Q 030299 155 ---IYELVFCLRQLLQYVILDG 173 (179)
Q Consensus 155 ---~~~~~~~~~~~f~~v~~~~ 173 (179)
+...+..+++.|+.+.+-.
T Consensus 149 ~~~~~~~l~~l~~~~~~~~~~~ 170 (188)
T TIGR00438 149 GEEIDEYLNELRKLFEKVKVTK 170 (188)
T ss_pred CccHHHHHHHHHhhhceEEEeC
Confidence 2456677777887777543
|
|
| >KOG3673 consensus FtsJ-like RNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-24 Score=192.92 Aligned_cols=168 Identities=21% Similarity=0.320 Sum_probs=139.8
Q ss_pred CcCCCCchHHHHHHhhCCcchhhhcHHhHHHHhCCC--CC----CC-----------EEEEEccCCChHHHHHHHHhCCC
Q 030299 4 ASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIF--EG----VK-----------RVVDLCAAPGSWSQVLSRKLYLP 66 (179)
Q Consensus 4 ~~~~~~d~y~~~a~~~~~~sRaa~KL~eid~~~~ll--~~----g~-----------~VlDLgagpGg~s~~l~~~~~~~ 66 (179)
.+|.|+||| ++++..-|.+|||.|++|+|..++.+ +| |. .+.|+||||||||+|.++|-.|+
T Consensus 214 rARtRaNPy-EtIrs~fFlNRAAmKmANmD~i~d~mftNpRdp~g~~lva~~~~eLlYFaDvCAGPGGFSEYvLwRK~w~ 292 (845)
T KOG3673|consen 214 RARTRANPY-ETIRSAFFLNRAAMKMANMDKIYDWMFTNPRDPLGESLVAENVEELLYFADVCAGPGGFSEYVLWRKFWN 292 (845)
T ss_pred HHhhcCChH-HHHHHHHHhhHHHHHhhhHHHHHHHHhCCCCCcccCccccccHHHHHHHHhhhcCCCccchhhhhhhhhc
Confidence 378999998 99999999999999999999998864 33 11 45899999999999999999999
Q ss_pred CCCCC-CCCCCCCCeE---EEEeCCCCCCCCCeeEEeccccchhhHHHHHhhc----CCCCccEEeeCCCCCCCCCCccc
Q 030299 67 AKLSP-DSREGDLPLI---VAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHF----DGCKADLVVCDGAPDVTGLHDMD 138 (179)
Q Consensus 67 ~~~~~-~~~~~~~~~V---vavD~~~~~~~~~v~~i~gDi~~~~~~~~l~~~~----~~~~~D~VlsD~~~~~~g~~~~d 138 (179)
+|++| |+++.++.+. .|.-....++.+|+ -..|||+++.++..+.++. ++.+||+.++||.+++.|++|+|
T Consensus 293 AKGFGfTL~G~nDFKLekF~aaS~e~FetfYG~-k~dGdi~dp~Nidsl~~~i~~~T~~~GVHf~MADGGFSVEGQeNiQ 371 (845)
T KOG3673|consen 293 AKGFGFTLAGKNDFKLEKFTAASQEFFETFYGT-KDDGDIMDPVNIDSLEAHISRGTSGLGVHFMMADGGFSVEGQENIQ 371 (845)
T ss_pred cccceeEeccCCccchhhhhhcCHHhhhccccc-cCCCCcCCccchHHHHHHHhcCCCCcceEEEEecCCccccchhhHH
Confidence 99999 9988777654 33322224567785 4689999999887777654 34679999999999999999999
Q ss_pred HHHHHHHHHHHHHHH--------------------HHHHHHHHHHHhhceEEEee
Q 030299 139 EFVQSQLILAVSIQF--------------------FIYELVFCLRQLLQYVILDG 173 (179)
Q Consensus 139 ~~~q~~L~~~AL~~~--------------------~~~~~~~~~~~~f~~v~~~~ 173 (179)
+.++.+|+++.+-++ |+++|||+||.+|+.|++-+
T Consensus 372 EILSKqLyLCQfL~aL~IvR~gG~F~CK~FDlFTPFSVGLvYLmy~Cfq~v~l~K 426 (845)
T KOG3673|consen 372 EILSKQLYLCQFLVALCIVREGGNFFCKLFDLFTPFSVGLVYLMYVCFQSVSLHK 426 (845)
T ss_pred HHHHHHHHHHHHHHHheeeecCCeEEEeeecccCcchhhHHHHHHHHHHHhhccc
Confidence 999999999887654 36999999999999998753
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-15 Score=131.14 Aligned_cols=88 Identities=32% Similarity=0.399 Sum_probs=73.5
Q ss_pred hhCCcchhhhcHHhHHHHh-------CCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC
Q 030299 18 EEGWRARSAFKLLQIDEEF-------NIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA 90 (179)
Q Consensus 18 ~~~~~sRaa~KL~eid~~~-------~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~ 90 (179)
..+-+|||++||.|+...| ..+.+|+++|||||+|||||++++++ +.+|+|||..+|.
T Consensus 181 p~~apSRs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~r---------------G~~V~AVD~g~l~ 245 (357)
T PRK11760 181 PADAPSRSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRR---------------GMFVTAVDNGPMA 245 (357)
T ss_pred CCCCCChHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHc---------------CCEEEEEechhcC
Confidence 3367899999999995554 46789999999999999999999987 3699999999987
Q ss_pred C----CCCeeEEeccccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 91 P----IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 91 ~----~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
+ .++|++.++|.+...+ ..+++|+|+|||.
T Consensus 246 ~~L~~~~~V~h~~~d~fr~~p--------~~~~vDwvVcDmv 279 (357)
T PRK11760 246 QSLMDTGQVEHLRADGFKFRP--------PRKNVDWLVCDMV 279 (357)
T ss_pred HhhhCCCCEEEEeccCcccCC--------CCCCCCEEEEecc
Confidence 4 4689999999877542 1458999999996
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.5e-12 Score=105.21 Aligned_cols=110 Identities=24% Similarity=0.273 Sum_probs=87.7
Q ss_pred CchHHHHHHhhCCcchhhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC
Q 030299 9 RDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (179)
Q Consensus 9 ~d~y~~~a~~~~~~sRaa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~ 88 (179)
.|.|.+-+ +-|+|.|..|+. .-. +.+..+|.|||||||.-|+.|++|.+ ...|.|+|.|+
T Consensus 5 p~~Yl~F~---~eRtRPa~dLla---~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP-------------~A~i~GiDsS~ 64 (257)
T COG4106 5 PDQYLQFE---DERTRPARDLLA---RVP-LERPRRVVDLGCGPGNSTELLARRWP-------------DAVITGIDSSP 64 (257)
T ss_pred HHHHHHHH---HhccCcHHHHHh---hCC-ccccceeeecCCCCCHHHHHHHHhCC-------------CCeEeeccCCH
Confidence 35554433 459999999884 222 35567999999999999999999987 68999999998
Q ss_pred -C-----CCCCCeeEEeccccchhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHH
Q 030299 89 -M-----APIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSI 151 (179)
Q Consensus 89 -~-----~~~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~ 151 (179)
| ..+++++|.++|+.+.. ++...|+++++.. -+|..||...+..+...|.
T Consensus 65 ~Mla~Aa~rlp~~~f~~aDl~~w~---------p~~~~dllfaNAv----lqWlpdH~~ll~rL~~~L~ 120 (257)
T COG4106 65 AMLAKAAQRLPDATFEEADLRTWK---------PEQPTDLLFANAV----LQWLPDHPELLPRLVSQLA 120 (257)
T ss_pred HHHHHHHHhCCCCceecccHhhcC---------CCCccchhhhhhh----hhhccccHHHHHHHHHhhC
Confidence 3 25789999999999975 4568999999764 6999999887777776664
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.4e-11 Score=101.83 Aligned_cols=104 Identities=26% Similarity=0.357 Sum_probs=83.6
Q ss_pred HhhCCcchhhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC-----
Q 030299 17 KEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----- 91 (179)
Q Consensus 17 ~~~~~~sRaa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~----- 91 (179)
.+..|+||+++||....+.|++.-+|..|||+|++|||||++++++- ..+|+|+|....+-
T Consensus 55 ~~~~yVSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~g--------------Ak~VyavDVG~~Ql~~kLR 120 (245)
T COG1189 55 EEQPYVSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRG--------------AKHVYAVDVGYGQLHWKLR 120 (245)
T ss_pred cCcCccccHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcC--------------CcEEEEEEccCCccCHhHh
Confidence 35779999999999999999999999999999999999999999984 37999999998541
Q ss_pred -CCCeeEE-eccccchhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHH
Q 030299 92 -IEGVIQV-QGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSI 151 (179)
Q Consensus 92 -~~~v~~i-~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~ 151 (179)
-++|... ..|++..... .+.+ .+|++++|.+ +.|+.+++.++.
T Consensus 121 ~d~rV~~~E~tN~r~l~~~-----~~~~-~~d~~v~DvS-----------FISL~~iLp~l~ 165 (245)
T COG1189 121 NDPRVIVLERTNVRYLTPE-----DFTE-KPDLIVIDVS-----------FISLKLILPALL 165 (245)
T ss_pred cCCcEEEEecCChhhCCHH-----Hccc-CCCeEEEEee-----------hhhHHHHHHHHH
Confidence 3455444 6677765431 2333 7899999987 778888887765
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.9e-10 Score=96.50 Aligned_cols=93 Identities=23% Similarity=0.147 Sum_probs=69.9
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
++|.+|||+|||||++|..+++.++. .+.|+|+|+++.. .+.++.++.+|..+...
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~------------~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~- 136 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKN------------EGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGA- 136 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCC------------CCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhh-
Confidence 67899999999999999999998863 5799999999831 24578888888766421
Q ss_pred HHHHhhcCCCCccEEeeCCCCCCCCCCcccH---------------HHHHHHHHHHHHH
Q 030299 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDE---------------FVQSQLILAVSIQ 152 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~---------------~~q~~L~~~AL~~ 152 (179)
....||.|++|.+|+.+|.+..+. ..|.+++..|++.
T Consensus 137 -------~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~ 188 (264)
T TIGR00446 137 -------AVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDA 188 (264)
T ss_pred -------hccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 124699999999999888653221 2466666666654
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.7e-10 Score=95.42 Aligned_cols=71 Identities=25% Similarity=0.207 Sum_probs=57.2
Q ss_pred CCcchhhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC-C-C----CCC
Q 030299 20 GWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP-M-A----PIE 93 (179)
Q Consensus 20 ~~~sRaa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~-~-~----~~~ 93 (179)
.|+||+++||.++.+.+++..++.+|||+|||||+||..++++ + ..+|+|+|+++ | . ..+
T Consensus 54 ~~vsr~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~-g-------------a~~v~avD~~~~~l~~~l~~~~ 119 (228)
T TIGR00478 54 LFVSRGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK-G-------------AKEVYGVDVGYNQLAEKLRQDE 119 (228)
T ss_pred chhhhhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc-C-------------CCEEEEEeCCHHHHHHHHhcCC
Confidence 4999999999999999987678899999999999999999987 3 36899999999 3 2 223
Q ss_pred Cee-EEeccccc
Q 030299 94 GVI-QVQGDITN 104 (179)
Q Consensus 94 ~v~-~i~gDi~~ 104 (179)
.+. +...|++.
T Consensus 120 ~v~~~~~~ni~~ 131 (228)
T TIGR00478 120 RVKVLERTNIRY 131 (228)
T ss_pred CeeEeecCCccc
Confidence 433 34556663
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.6e-10 Score=97.32 Aligned_cols=73 Identities=15% Similarity=0.115 Sum_probs=58.4
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CCCCCeeEEeccccchhhHH
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~~~~~v~~i~gDi~~~~~~~ 109 (179)
++++++|||||||||.||+++++.+++ .+.|+|||+++. ...+||.++.+|++.+....
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~------------~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~ 197 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGP------------EGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYR 197 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCC------------CCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhh
Confidence 589999999999999999999999864 589999999972 12369999999998753211
Q ss_pred HHHhhcCCCCccEEeeCCC
Q 030299 110 VVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~ 128 (179)
+....||+|++|++
T Consensus 198 -----~~~~~vDvV~~Dva 211 (293)
T PTZ00146 198 -----MLVPMVDVIFADVA 211 (293)
T ss_pred -----cccCCCCEEEEeCC
Confidence 12247999999995
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.7e-10 Score=99.43 Aligned_cols=94 Identities=18% Similarity=0.190 Sum_probs=71.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
++|.+|||+|||||+.|.++++.++. .+.|+|+|+++.. .+.+++++++|.++...
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~------------~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~- 302 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKD------------QGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTE- 302 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCC------------CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhh-
Confidence 57899999999999999999998853 5899999999831 24567888999887531
Q ss_pred HHHHhhcCCCCccEEeeCCCCCCCCCCccc---------------HHHHHHHHHHHHHH
Q 030299 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMD---------------EFVQSQLILAVSIQ 152 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d---------------~~~q~~L~~~AL~~ 152 (179)
+..+.||.|++|.+|+..|.+..+ ...|.+++..+.+.
T Consensus 303 ------~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~ 355 (431)
T PRK14903 303 ------YVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKL 355 (431)
T ss_pred ------hhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHh
Confidence 123579999999999999874321 12567777666653
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=99.05 E-value=1e-09 Score=99.32 Aligned_cols=94 Identities=21% Similarity=0.159 Sum_probs=72.1
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
++|++|||+||||||.|.+++..++. .+.|+|+|+++-. .+.++.....|.+...
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~------------~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~-- 177 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNN------------QGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFG-- 177 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCC------------CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhh--
Confidence 68999999999999999999999864 6899999999842 2467777777776532
Q ss_pred HHHHhhcCCCCccEEeeCCCCCCCCCCccc---------------HHHHHHHHHHHHHH
Q 030299 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMD---------------EFVQSQLILAVSIQ 152 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d---------------~~~q~~L~~~AL~~ 152 (179)
+.++ ..||.|+.|.+|+.+|.+-.+ ..+|.+++..|+.+
T Consensus 178 ----~~~~-~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~ 231 (470)
T PRK11933 178 ----AALP-ETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHA 231 (470)
T ss_pred ----hhch-hhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 1233 479999999999999985433 24577777777764
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.1e-09 Score=79.02 Aligned_cols=65 Identities=31% Similarity=0.386 Sum_probs=53.1
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC------------CCCCCeeEEeccc-cchhh
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------------APIEGVIQVQGDI-TNART 107 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~------------~~~~~v~~i~gDi-~~~~~ 107 (179)
|+.+|||||||+|.++.+++++.+ ..+|+|+|++|. ...++++++++|+ ...+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~-------------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~- 66 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFP-------------GARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD- 66 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHT-------------TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT-
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCC-------------CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc-
Confidence 678999999999999999999655 589999999983 1246899999999 3332
Q ss_pred HHHHHhhcCCCCccEEeeCC
Q 030299 108 AEVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~ 127 (179)
...+||+|++++
T Consensus 67 --------~~~~~D~v~~~~ 78 (112)
T PF12847_consen 67 --------FLEPFDLVICSG 78 (112)
T ss_dssp --------TSSCEEEEEECS
T ss_pred --------cCCCCCEEEECC
Confidence 235799999987
|
... |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2e-09 Score=94.26 Aligned_cols=97 Identities=28% Similarity=0.349 Sum_probs=72.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
+||.+|||+||+|||.|.++++.+.. ....|+|+|.++.. ...|+..+..|.......
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~-----------~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~ 223 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMEN-----------EGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAEL 223 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCC-----------CCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccccc
Confidence 67999999999999999999999863 13456999999831 356777778887654311
Q ss_pred HHHHhhcCCCCccEEeeCCCCCCCCCCcc--c-------------HHHHHHHHHHHHHH
Q 030299 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDM--D-------------EFVQSQLILAVSIQ 152 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~~~~g~~~~--d-------------~~~q~~L~~~AL~~ 152 (179)
...+.+||.||.|.+|+.+|.+-. + +..|.+|+..|+..
T Consensus 224 -----~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~ 277 (355)
T COG0144 224 -----LPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKL 277 (355)
T ss_pred -----ccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 012236999999999999999621 1 25688888888875
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.3e-09 Score=95.87 Aligned_cols=80 Identities=18% Similarity=0.107 Sum_probs=62.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
++|.+|||+|||||++|.++++.++. .++|+|+|+++.. .+.+|+++.+|.++....
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~------------~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~ 318 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGD------------QGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLEL 318 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCC------------CceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccc
Confidence 57899999999999999999998763 5899999999831 245788899998875310
Q ss_pred HHHHhhcCCCCccEEeeCCCCCCCCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGAPDVTGLH 135 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~~~~g~~ 135 (179)
. ....+.||.|++|.+|+.+|.+
T Consensus 319 ---~-~~~~~~fD~Vl~DaPCSg~G~~ 341 (434)
T PRK14901 319 ---K-PQWRGYFDRILLDAPCSGLGTL 341 (434)
T ss_pred ---c-ccccccCCEEEEeCCCCccccc
Confidence 0 0123579999999999888874
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.8e-09 Score=94.13 Aligned_cols=75 Identities=27% Similarity=0.338 Sum_probs=61.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
.+|.+|||+|||||++|.++++.++. .+.|+|+|+++.. .+.+++++.+|+.+..
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~------------~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-- 314 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQN------------RGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-- 314 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCC------------CcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc--
Confidence 57889999999999999999998753 5799999999931 2456888899987742
Q ss_pred HHHHhhcCCCCccEEeeCCCCCCCCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGAPDVTGLH 135 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~~~~g~~ 135 (179)
++..||.|++|.+|+.+|.+
T Consensus 315 -------~~~~fD~Vl~D~Pcsg~g~~ 334 (445)
T PRK14904 315 -------PEEQPDAILLDAPCTGTGVL 334 (445)
T ss_pred -------cCCCCCEEEEcCCCCCcchh
Confidence 23579999999999888874
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=4e-09 Score=87.03 Aligned_cols=72 Identities=21% Similarity=0.242 Sum_probs=56.7
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CCCCCeeEEeccccchhhHH
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~~~~~v~~i~gDi~~~~~~~ 109 (179)
+++|.+|||+|||||.++.++++.++ .+.|+|+|+++. ...+|+.++.+|++++....
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~-------------~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~ 136 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVE-------------EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYA 136 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcC-------------CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhh
Confidence 47899999999999999999999875 479999999982 12468999999998642111
Q ss_pred HHHhhcCCCCccEEeeCCC
Q 030299 110 VVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~ 128 (179)
.+. ..||+|++|++
T Consensus 137 ----~l~-~~~D~i~~d~~ 150 (226)
T PRK04266 137 ----HVV-EKVDVIYQDVA 150 (226)
T ss_pred ----hcc-ccCCEEEECCC
Confidence 123 36999999975
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.4e-09 Score=90.97 Aligned_cols=88 Identities=19% Similarity=0.189 Sum_probs=70.7
Q ss_pred cHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCC-Ce
Q 030299 28 KLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GV 95 (179)
Q Consensus 28 KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~-~v 95 (179)
|+-.+.++++ |+||++|||||||.|+.+.+++++.+ .+|+|+++|+.+ ..+ ++
T Consensus 60 k~~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y~--------------v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v 124 (283)
T COG2230 60 KLDLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEYG--------------VTVVGVTLSEEQLAYAEKRIAARGLEDNV 124 (283)
T ss_pred HHHHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHcC--------------CEEEEeeCCHHHHHHHHHHHHHcCCCccc
Confidence 4444556666 49999999999999999999999974 799999999842 234 78
Q ss_pred eEEeccccchhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHH
Q 030299 96 IQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFV 141 (179)
Q Consensus 96 ~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~ 141 (179)
+++..|..+.+ ++||.|+|=+.+..-|..+.+.+.
T Consensus 125 ~v~l~d~rd~~-----------e~fDrIvSvgmfEhvg~~~~~~ff 159 (283)
T COG2230 125 EVRLQDYRDFE-----------EPFDRIVSVGMFEHVGKENYDDFF 159 (283)
T ss_pred EEEeccccccc-----------cccceeeehhhHHHhCcccHHHHH
Confidence 88888888853 359999999999888888777653
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.2e-09 Score=80.67 Aligned_cols=71 Identities=21% Similarity=0.389 Sum_probs=56.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~~~v~~i~gDi~~~~~~ 108 (179)
+++.+|||||||+|.++..++++..+ ..+|+|+|+++. ...++++++++|+++.+.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~------------~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~- 68 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNP------------GAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQ- 68 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTT------------TSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCG-
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCC------------CCEEEEEECcHHHHHHhhcccccccccccceEEeehhcccc-
Confidence 46789999999999999999976543 589999999993 135689999999999542
Q ss_pred HHHHhhcCCCCccEEeeCCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~ 129 (179)
.++ ..||+|++++..
T Consensus 69 -----~~~-~~~D~I~~~~~l 83 (152)
T PF13847_consen 69 -----ELE-EKFDIIISNGVL 83 (152)
T ss_dssp -----CSS-TTEEEEEEESTG
T ss_pred -----ccC-CCeeEEEEcCch
Confidence 022 689999998765
|
... |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.7e-08 Score=82.12 Aligned_cols=69 Identities=19% Similarity=0.315 Sum_probs=56.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
+++.+|||+|||+|.++..+++..++ .+.|+|+|+++.. ..++++++++|+.+.+
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~------------~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-- 109 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGP------------EGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP-- 109 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCC------------CCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC--
Confidence 67899999999999999999998753 5799999999731 2457899999998753
Q ss_pred HHHHhhcCCCCccEEeeCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~ 128 (179)
+++++||+|+++..
T Consensus 110 ------~~~~~fD~V~~~~~ 123 (231)
T TIGR02752 110 ------FDDNSFDYVTIGFG 123 (231)
T ss_pred ------CCCCCccEEEEecc
Confidence 34568999998754
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.90 E-value=3e-09 Score=88.52 Aligned_cols=66 Identities=23% Similarity=0.328 Sum_probs=57.1
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC-CC----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP-MA----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~-~~----------~~~~v~~i~gDi~~~~~~ 108 (179)
++|.+|||+|||||-++..+++..+ .++|+|+|+++ |- ...++++++||+.+.+
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~g-------------~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP-- 114 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSVG-------------TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP-- 114 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhcC-------------CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC--
Confidence 4899999999999999999999986 59999999998 31 1345999999999987
Q ss_pred HHHHhhcCCCCccEEeeC
Q 030299 109 EVVIRHFDGCKADLVVCD 126 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD 126 (179)
|++.+||+|.+.
T Consensus 115 ------f~D~sFD~vt~~ 126 (238)
T COG2226 115 ------FPDNSFDAVTIS 126 (238)
T ss_pred ------CCCCccCEEEee
Confidence 688999999874
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.2e-09 Score=92.50 Aligned_cols=76 Identities=24% Similarity=0.330 Sum_probs=60.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
+++.+|||+|||||++|.++++++++ .++|+|+|+++.. .+.+++++++|+++...
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~------------~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~- 315 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKN------------TGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHE- 315 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCC------------CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccc-
Confidence 57889999999999999999998743 5899999999841 24568899999987421
Q ss_pred HHHHhhcCCCCccEEeeCCCCCCCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGAPDVTGL 134 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~~~~g~ 134 (179)
.++ +.||+|++|++++..|.
T Consensus 316 -----~~~-~~fD~Vl~D~Pcsg~G~ 335 (444)
T PRK14902 316 -----KFA-EKFDKILVDAPCSGLGV 335 (444)
T ss_pred -----hhc-ccCCEEEEcCCCCCCee
Confidence 123 57999999998877775
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.4e-09 Score=91.73 Aligned_cols=77 Identities=19% Similarity=0.278 Sum_probs=57.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCC-CeeEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~-~v~~i~gDi~~~~~ 107 (179)
.+|.+|||+|||||++|.++++.++ .++|+|+|+++.. .+. .+.+..+|..+...
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~-------------~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~ 303 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAP-------------QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQ 303 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcC-------------CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccc
Confidence 5789999999999999999999875 4899999999841 122 12335667654321
Q ss_pred HHHHHhhcCCCCccEEeeCCCCCCCCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGAPDVTGLH 135 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~~~~~g~~ 135 (179)
.....+||.|++|++|+.+|..
T Consensus 304 ------~~~~~~fD~VllDaPcSg~G~~ 325 (426)
T TIGR00563 304 ------WAENEQFDRILLDAPCSATGVI 325 (426)
T ss_pred ------cccccccCEEEEcCCCCCCccc
Confidence 0134579999999999998873
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=5e-09 Score=86.97 Aligned_cols=84 Identities=31% Similarity=0.428 Sum_probs=62.3
Q ss_pred CCcchhhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCe
Q 030299 20 GWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGV 95 (179)
Q Consensus 20 ~~~sRaa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----~~~~v 95 (179)
..|.+...+|++. .. ..++.+|||||||+|.++..++++.+ ..+|+|+|+++.. ...++
T Consensus 12 ~~~~~~~~~ll~~---l~-~~~~~~vLDlGcG~G~~~~~l~~~~p-------------~~~v~gvD~s~~~~~~a~~~~~ 74 (255)
T PRK14103 12 DHRGRPFYDLLAR---VG-AERARRVVDLGCGPGNLTRYLARRWP-------------GAVIEALDSSPEMVAAARERGV 74 (255)
T ss_pred hHhhCHHHHHHHh---CC-CCCCCEEEEEcCCCCHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHhcCC
Confidence 3455666665532 22 25778999999999999999999864 4799999999831 23578
Q ss_pred eEEeccccchhhHHHHHhhcCCCCccEEeeCCCC
Q 030299 96 IQVQGDITNARTAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 96 ~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
.++++|+.+.. ++.+||+|++....
T Consensus 75 ~~~~~d~~~~~---------~~~~fD~v~~~~~l 99 (255)
T PRK14103 75 DARTGDVRDWK---------PKPDTDVVVSNAAL 99 (255)
T ss_pred cEEEcChhhCC---------CCCCceEEEEehhh
Confidence 89999987642 24589999997653
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.5e-08 Score=90.46 Aligned_cols=77 Identities=25% Similarity=0.346 Sum_probs=60.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------C-CCCeeEEeccccchhhHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-IEGVIQVQGDITNARTAE 109 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~-~~~v~~i~gDi~~~~~~~ 109 (179)
++|.+|||+|||||++|..++++.+ .+.|+|+|+++.. . -.++.++.+|+++...
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~-------------~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~-- 307 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAP-------------QAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQ-- 307 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcC-------------CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchh--
Confidence 5789999999999999999999874 3799999999841 0 1136788999987432
Q ss_pred HHHhhcCCCCccEEeeCCCCCCCCCC
Q 030299 110 VVIRHFDGCKADLVVCDGAPDVTGLH 135 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~~~~~g~~ 135 (179)
.+.+.+||.|++|.+|+.+|.+
T Consensus 308 ----~~~~~~fD~Vl~D~Pcs~~G~~ 329 (427)
T PRK10901 308 ----WWDGQPFDRILLDAPCSATGVI 329 (427)
T ss_pred ----hcccCCCCEEEECCCCCccccc
Confidence 1234579999999999888763
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.7e-09 Score=89.22 Aligned_cols=94 Identities=24% Similarity=0.265 Sum_probs=70.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
.+|.+|||+||||||.|.++++.+.. .+.|+|+|+++.+ ...++..+..|.+.....
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~------------~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~ 151 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGN------------KGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPK 151 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTT------------TSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHH
T ss_pred cccccccccccCCCCceeeeeecccc------------hhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccccc
Confidence 57899999999999999999999974 6999999999831 345777777777765321
Q ss_pred HHHHhhcCCCCccEEeeCCCCCCCCCCccc---------------HHHHHHHHHHHHH
Q 030299 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMD---------------EFVQSQLILAVSI 151 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d---------------~~~q~~L~~~AL~ 151 (179)
.....||.|+.|.+|+.+|.+..+ ...|.+|+..|+.
T Consensus 152 ------~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~ 203 (283)
T PF01189_consen 152 ------KPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAK 203 (283)
T ss_dssp ------HHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHH
T ss_pred ------ccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHH
Confidence 123469999999999999875422 1446666666665
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.5e-09 Score=88.57 Aligned_cols=69 Identities=26% Similarity=0.419 Sum_probs=46.6
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC-C----------CCCCCeeEEeccccchhh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP-M----------APIEGVIQVQGDITNART 107 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~-~----------~~~~~v~~i~gDi~~~~~ 107 (179)
.++|.+|||||||||-++..++++.++ .++|+|+|+++ | ....+++++++|+++.+
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~------------~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp- 111 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGP------------NGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLP- 111 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---------------EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB---
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCC------------ccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhc-
Confidence 367899999999999999999988764 68999999998 3 12458999999999986
Q ss_pred HHHHHhhcCCCCccEEeeCC
Q 030299 108 AEVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~ 127 (179)
++++.||+|++-.
T Consensus 112 -------~~d~sfD~v~~~f 124 (233)
T PF01209_consen 112 -------FPDNSFDAVTCSF 124 (233)
T ss_dssp -------S-TT-EEEEEEES
T ss_pred -------CCCCceeEEEHHh
Confidence 5678999999754
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.1e-08 Score=84.60 Aligned_cols=86 Identities=21% Similarity=0.255 Sum_probs=63.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC------CCCCCeeEEeccccchhhHHHHHh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------APIEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~------~~~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
.++.+|||||||+|.++..++++.+ ...|+|+|+++. +..+++.++.+|+.+..
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~-------------~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~------- 89 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWP-------------AARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ------- 89 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHhCCCCeEEECchhccC-------
Confidence 6788999999999999999998875 579999999983 23568889999987642
Q ss_pred hcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHH
Q 030299 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSI 151 (179)
Q Consensus 114 ~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~ 151 (179)
+..+||+|+++... +|..|....++-+..+|+
T Consensus 90 --~~~~fD~v~~~~~l----~~~~d~~~~l~~~~~~Lk 121 (258)
T PRK01683 90 --PPQALDLIFANASL----QWLPDHLELFPRLVSLLA 121 (258)
T ss_pred --CCCCccEEEEccCh----hhCCCHHHHHHHHHHhcC
Confidence 23589999998653 354454333444444443
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.6e-08 Score=89.65 Aligned_cols=95 Identities=24% Similarity=0.296 Sum_probs=73.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
+||.+|||+||+|||.|.+++..+.. .|.|+|.|.+... ...|......|....+.
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn------------~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~- 306 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKN------------TGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPE- 306 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcC------------CceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccc-
Confidence 57999999999999999999999975 7999999988742 24677677777764321
Q ss_pred HHHHhhcCCCCccEEeeCCCCCCCCCCccc---------------HHHHHHHHHHHHHH
Q 030299 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMD---------------EFVQSQLILAVSIQ 152 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d---------------~~~q~~L~~~AL~~ 152 (179)
+.++. +||.||.|++|+.+|.-..+ ..+|.+|.+.|+.+
T Consensus 307 ----~~~~~-~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~l 360 (460)
T KOG1122|consen 307 ----KEFPG-SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDL 360 (460)
T ss_pred ----cccCc-ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhh
Confidence 11454 89999999999998774332 36799999999875
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.6e-08 Score=82.12 Aligned_cols=75 Identities=21% Similarity=0.308 Sum_probs=58.5
Q ss_pred HHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC------CCCCCeeEEeccccchh
Q 030299 33 DEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------APIEGVIQVQGDITNAR 106 (179)
Q Consensus 33 d~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~------~~~~~v~~i~gDi~~~~ 106 (179)
.+....+.++.+|||+|||+|.++..+++..+ ...|+|+|+++. +..+++.++++|+.++
T Consensus 35 ~~~l~~~~~~~~VLDiGCG~G~~~~~L~~~~~-------------~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~- 100 (204)
T TIGR03587 35 ARALNRLPKIASILELGANIGMNLAALKRLLP-------------FKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDP- 100 (204)
T ss_pred HHHHHhcCCCCcEEEEecCCCHHHHHHHHhCC-------------CCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCC-
Confidence 33344456788999999999999999988764 478999999983 1246788889998872
Q ss_pred hHHHHHhhcCCCCccEEeeCCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
+++++||+|++.+..
T Consensus 101 --------~~~~sfD~V~~~~vL 115 (204)
T TIGR03587 101 --------FKDNFFDLVLTKGVL 115 (204)
T ss_pred --------CCCCCEEEEEECChh
Confidence 356789999997753
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.1e-08 Score=81.73 Aligned_cols=70 Identities=24% Similarity=0.372 Sum_probs=56.6
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-C-------C------CCCeeEEeccccc
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-A-------P------IEGVIQVQGDITN 104 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-~-------~------~~~v~~i~gDi~~ 104 (179)
++++.+|||||||+|.++..++++.++ .+.|+|+|+++. - + .++++++++|+.+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~------------~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~ 138 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGS------------DGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATD 138 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCC------------CCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccccc
Confidence 367899999999999999999988753 479999999982 0 1 2478999999988
Q ss_pred hhhHHHHHhhcCCCCccEEeeCCC
Q 030299 105 ARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 105 ~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
.+ ++++.||+|++...
T Consensus 139 lp--------~~~~sfD~V~~~~~ 154 (261)
T PLN02233 139 LP--------FDDCYFDAITMGYG 154 (261)
T ss_pred CC--------CCCCCEeEEEEecc
Confidence 65 46678999998654
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.9e-08 Score=79.20 Aligned_cols=86 Identities=22% Similarity=0.242 Sum_probs=62.6
Q ss_pred cchhhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-------CCCC
Q 030299 22 RARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------PIEG 94 (179)
Q Consensus 22 ~sRaa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-------~~~~ 94 (179)
+.+.+..|++....... .++.+|||||||+|.++..+++..+ ...|+++|+++.. ..++
T Consensus 16 q~~~~~~l~~~~~~~~~-~~~~~vLDlG~G~G~~~~~l~~~~~-------------~~~~~~~D~~~~~~~~~~~~~~~~ 81 (240)
T TIGR02072 16 QREMAKRLLALLKEKGI-FIPASVLDIGCGTGYLTRALLKRFP-------------QAEFIALDISAGMLAQAKTKLSEN 81 (240)
T ss_pred HHHHHHHHHHHhhhhcc-CCCCeEEEECCCccHHHHHHHHhCC-------------CCcEEEEeChHHHHHHHHHhcCCC
Confidence 34455666665444332 3347899999999999999998864 4679999999831 1247
Q ss_pred eeEEeccccchhhHHHHHhhcCCCCccEEeeCCCC
Q 030299 95 VIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 95 v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
+.++.+|+.+.+ +++++||+|+++...
T Consensus 82 ~~~~~~d~~~~~--------~~~~~fD~vi~~~~l 108 (240)
T TIGR02072 82 VQFICGDAEKLP--------LEDSSFDLIVSNLAL 108 (240)
T ss_pred CeEEecchhhCC--------CCCCceeEEEEhhhh
Confidence 889999998754 345689999998653
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.6e-08 Score=80.78 Aligned_cols=71 Identities=15% Similarity=0.195 Sum_probs=56.4
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART 107 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~ 107 (179)
+++|.+|||||||+|.++..++...+. .++|+|+|+++.. .+.+++++++|+.+.+
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~------------~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~- 141 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGP------------TGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALP- 141 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCC------------CCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCC-
Confidence 467899999999999999988887753 5789999999831 2458889999997754
Q ss_pred HHHHHhhcCCCCccEEeeCCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
++++.||+|+++...
T Consensus 142 -------~~~~~fD~Vi~~~v~ 156 (272)
T PRK11873 142 -------VADNSVDVIISNCVI 156 (272)
T ss_pred -------CCCCceeEEEEcCcc
Confidence 345689999998653
|
|
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.9e-08 Score=84.84 Aligned_cols=85 Identities=29% Similarity=0.330 Sum_probs=68.4
Q ss_pred CcchhhhcHHhHH-------HHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC--
Q 030299 21 WRARSAFKLLQID-------EEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-- 91 (179)
Q Consensus 21 ~~sRaa~KL~eid-------~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~-- 91 (179)
-+|||+.||.|.. +.-.-|++|+..+||||.|||||-.+.++ .-.|+|||-.+|.+
T Consensus 184 APSRStLKLEEA~~tfip~~E~~~rL~~~M~avDLGAcPGGWTyqLVkr---------------~m~V~aVDng~ma~sL 248 (358)
T COG2933 184 APSRSTLKLEEAFHTFIPRDEWDKRLAPGMWAVDLGACPGGWTYQLVKR---------------NMRVYAVDNGPMAQSL 248 (358)
T ss_pred CCchhhhhHHHHHHHhcChhhhhhhhcCCceeeecccCCCccchhhhhc---------------ceEEEEeccchhhhhh
Confidence 4899999998853 33345689999999999999999999887 36899999999964
Q ss_pred --CCCeeEEeccccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 92 --IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 92 --~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
...|+....|-+...+ ...++|+++|||.
T Consensus 249 ~dtg~v~h~r~DGfk~~P--------~r~~idWmVCDmV 279 (358)
T COG2933 249 MDTGQVTHLREDGFKFRP--------TRSNIDWMVCDMV 279 (358)
T ss_pred hcccceeeeeccCccccc--------CCCCCceEEeehh
Confidence 3458888888887542 1357999999995
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=98.73 E-value=7.5e-08 Score=77.34 Aligned_cols=69 Identities=19% Similarity=0.119 Sum_probs=55.2
Q ss_pred CCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCeeEEeccccch
Q 030299 37 NIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNA 105 (179)
Q Consensus 37 ~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~~~v~~i~gDi~~~ 105 (179)
..++++.+|||+|||+|..+..++.+.+ .++|+|+|+++. ...++++++++|+.+.
T Consensus 41 ~~l~~g~~VLDiGcGtG~~al~la~~~~-------------~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~ 107 (187)
T PRK00107 41 PYLPGGERVLDVGSGAGFPGIPLAIARP-------------ELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEF 107 (187)
T ss_pred hhcCCCCeEEEEcCCCCHHHHHHHHHCC-------------CCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhC
Confidence 3456789999999999999999988654 589999999983 1245799999999875
Q ss_pred hhHHHHHhhcCCCCccEEeeCC
Q 030299 106 RTAEVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 106 ~~~~~l~~~~~~~~~D~VlsD~ 127 (179)
. . +++||+|+++.
T Consensus 108 ~--------~-~~~fDlV~~~~ 120 (187)
T PRK00107 108 G--------Q-EEKFDVVTSRA 120 (187)
T ss_pred C--------C-CCCccEEEEcc
Confidence 3 2 45899999974
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.6e-08 Score=84.44 Aligned_cols=87 Identities=18% Similarity=0.157 Sum_probs=57.8
Q ss_pred cHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCe
Q 030299 28 KLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGV 95 (179)
Q Consensus 28 KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v 95 (179)
|+..+.++.+ ++||++|||||||.|+++.+++++.+ .+|+|+++|+.+ .+ ..+
T Consensus 50 k~~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~g--------------~~v~gitlS~~Q~~~a~~~~~~~gl~~~v 114 (273)
T PF02353_consen 50 KLDLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERYG--------------CHVTGITLSEEQAEYARERIREAGLEDRV 114 (273)
T ss_dssp HHHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH----------------EEEEEES-HHHHHHHHHHHHCSTSSSTE
T ss_pred HHHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHcC--------------cEEEEEECCHHHHHHHHHHHHhcCCCCce
Confidence 3444455555 48999999999999999999999974 799999999842 23 358
Q ss_pred eEEeccccchhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHH
Q 030299 96 IQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEF 140 (179)
Q Consensus 96 ~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~ 140 (179)
++..+|..+.+ .+||.|+|=+....-|..+...+
T Consensus 115 ~v~~~D~~~~~-----------~~fD~IvSi~~~Ehvg~~~~~~~ 148 (273)
T PF02353_consen 115 EVRLQDYRDLP-----------GKFDRIVSIEMFEHVGRKNYPAF 148 (273)
T ss_dssp EEEES-GGG--------------S-SEEEEESEGGGTCGGGHHHH
T ss_pred EEEEeeccccC-----------CCCCEEEEEechhhcChhHHHHH
Confidence 88889988753 38999999887666666555443
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=98.69 E-value=7.6e-08 Score=69.96 Aligned_cols=69 Identities=23% Similarity=0.217 Sum_probs=53.1
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
.++++|||+|||+|.++.+++++.+ ..+|+|+|+++.. ..++++++.+|+.+...
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~-------------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~- 83 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVP-------------NGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALE- 83 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCC-------------CceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccCh-
Confidence 5678999999999999999999875 4799999999831 24578888888765221
Q ss_pred HHHHhhcCCCCccEEeeCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~ 128 (179)
....+||.|++++.
T Consensus 84 ------~~~~~~D~v~~~~~ 97 (124)
T TIGR02469 84 ------DSLPEPDRVFIGGS 97 (124)
T ss_pred ------hhcCCCCEEEECCc
Confidence 11247999999764
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.3e-07 Score=82.22 Aligned_cols=67 Identities=28% Similarity=0.329 Sum_probs=54.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~~ 107 (179)
+++.+|||||||+|+++..++++.+ ..|+|+|+++.. .. ++++++++|+.+.+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g--------------~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~- 181 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYG--------------ANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQP- 181 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcC--------------CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCC-
Confidence 5788999999999999999998763 699999999831 12 46899999998864
Q ss_pred HHHHHhhcCCCCccEEeeCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~ 128 (179)
++++.||+|++..+
T Consensus 182 -------~~~~~FD~V~s~~~ 195 (340)
T PLN02244 182 -------FEDGQFDLVWSMES 195 (340)
T ss_pred -------CCCCCccEEEECCc
Confidence 45678999998653
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.3e-08 Score=78.12 Aligned_cols=65 Identities=14% Similarity=0.114 Sum_probs=52.3
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCeeEEeccccchhhHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~~~v~~i~gDi~~~~~~~ 109 (179)
++.+|||+|||+|..+..++...+ .++|+|+|+++. ....+++++++|+.+.+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~-------------~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~--- 105 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARP-------------ELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ--- 105 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCC-------------CCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc---
Confidence 378999999999999999986643 578999999983 12457999999998742
Q ss_pred HHHhhcCCCCccEEeeCC
Q 030299 110 VVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~ 127 (179)
..++||+|++++
T Consensus 106 ------~~~~fD~I~s~~ 117 (181)
T TIGR00138 106 ------HEEQFDVITSRA 117 (181)
T ss_pred ------ccCCccEEEehh
Confidence 235899999975
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-07 Score=79.61 Aligned_cols=96 Identities=13% Similarity=0.100 Sum_probs=64.1
Q ss_pred CCchHHHHHHhhCCcchhhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCC
Q 030299 8 KRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQ 87 (179)
Q Consensus 8 ~~d~y~~~a~~~~~~sRaa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~ 87 (179)
.-+.|.++-...-+++...--...+.++.. ++++.+|||||||+|+.+.+++... ...|+|+|++
T Consensus 20 ~~~~~e~~~g~~~~~~gg~~~~~~~l~~l~-l~~~~~VLDiGcG~G~~a~~la~~~--------------~~~v~giD~s 84 (263)
T PTZ00098 20 GIKAYEFIFGEDYISSGGIEATTKILSDIE-LNENSKVLDIGSGLGGGCKYINEKY--------------GAHVHGVDIC 84 (263)
T ss_pred cchhHHHHhCCCCCCCCchHHHHHHHHhCC-CCCCCEEEEEcCCCChhhHHHHhhc--------------CCEEEEEECC
Confidence 344444444333334433222333444443 3788999999999999999998764 3699999999
Q ss_pred CCC---------CCCCeeEEeccccchhhHHHHHhhcCCCCccEEeeC
Q 030299 88 PMA---------PIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCD 126 (179)
Q Consensus 88 ~~~---------~~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD 126 (179)
+.. ...++.++.+|+.+.+ ++++.||+|++.
T Consensus 85 ~~~~~~a~~~~~~~~~i~~~~~D~~~~~--------~~~~~FD~V~s~ 124 (263)
T PTZ00098 85 EKMVNIAKLRNSDKNKIEFEANDILKKD--------FPENTFDMIYSR 124 (263)
T ss_pred HHHHHHHHHHcCcCCceEEEECCcccCC--------CCCCCeEEEEEh
Confidence 831 1246889999998653 455689999984
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.7e-08 Score=80.20 Aligned_cols=72 Identities=22% Similarity=0.279 Sum_probs=59.1
Q ss_pred hCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCeeEEeccccchhhHHHH
Q 030299 36 FNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 36 ~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----~~~~v~~i~gDi~~~~~~~~l 111 (179)
.++++||.+|||||||.|....+|.+.. +....|+|+++.. --.|+.++|+|+.+-
T Consensus 8 ~~~I~pgsrVLDLGCGdG~LL~~L~~~k--------------~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~g------ 67 (193)
T PF07021_consen 8 AEWIEPGSRVLDLGCGDGELLAYLKDEK--------------QVDGYGVEIDPDNVAACVARGVSVIQGDLDEG------ 67 (193)
T ss_pred HHHcCCCCEEEecCCCchHHHHHHHHhc--------------CCeEEEEecCHHHHHHHHHcCCCEEECCHHHh------
Confidence 4567999999999999999999998864 4789999999852 136899999999873
Q ss_pred HhhcCCCCccEEeeCC
Q 030299 112 IRHFDGCKADLVVCDG 127 (179)
Q Consensus 112 ~~~~~~~~~D~VlsD~ 127 (179)
+..+++..||.|+..-
T Consensus 68 L~~f~d~sFD~VIlsq 83 (193)
T PF07021_consen 68 LADFPDQSFDYVILSQ 83 (193)
T ss_pred HhhCCCCCccEEehHh
Confidence 2347889999999843
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.67 E-value=8.8e-08 Score=77.75 Aligned_cols=71 Identities=21% Similarity=0.223 Sum_probs=56.3
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART 107 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~ 107 (179)
++++.+|||||||+|.++..+++..+. .++|+++|+++.. ...+++++.+|..+...
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~------------~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~ 142 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGR------------DGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE 142 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCC------------CCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc
Confidence 378999999999999999999998753 4789999999831 24689999999976421
Q ss_pred HHHHHhhcCCCCccEEeeCCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
...+||+|++++++
T Consensus 143 --------~~~~fD~Ii~~~~~ 156 (215)
T TIGR00080 143 --------PLAPYDRIYVTAAG 156 (215)
T ss_pred --------ccCCCCEEEEcCCc
Confidence 23589999998753
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.2e-07 Score=77.16 Aligned_cols=70 Identities=17% Similarity=0.168 Sum_probs=56.4
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART 107 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~ 107 (179)
++++++|||+|||+|..+..+++..+. .++|+++|+++.. ...+++++.+|.....
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~~------------~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~- 140 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVGK------------SGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGY- 140 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcCC------------CCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC-
Confidence 378999999999999999999988753 5799999999831 2457999999987642
Q ss_pred HHHHHhhcCCCCccEEeeCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~ 128 (179)
.+..+||+|+++++
T Consensus 141 -------~~~~~fD~I~~~~~ 154 (212)
T PRK13942 141 -------EENAPYDRIYVTAA 154 (212)
T ss_pred -------CcCCCcCEEEECCC
Confidence 13468999999875
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=9.8e-08 Score=78.77 Aligned_cols=65 Identities=23% Similarity=0.253 Sum_probs=50.7
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC------CCCCCeeEEeccccchhhHHHHHhh
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------APIEGVIQVQGDITNARTAEVVIRH 114 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~------~~~~~v~~i~gDi~~~~~~~~l~~~ 114 (179)
++.+|||+|||+|.++..++.+ ...|+|+|+++. +......++.+|+.+.+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~---------------~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~-------- 98 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER---------------GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLP-------- 98 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc---------------CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCc--------
Confidence 5679999999999999988764 368999999983 12234567899998754
Q ss_pred cCCCCccEEeeCCC
Q 030299 115 FDGCKADLVVCDGA 128 (179)
Q Consensus 115 ~~~~~~D~VlsD~~ 128 (179)
++++.||+|+++.+
T Consensus 99 ~~~~~fD~V~s~~~ 112 (251)
T PRK10258 99 LATATFDLAWSNLA 112 (251)
T ss_pred CCCCcEEEEEECch
Confidence 35568999999765
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.5e-07 Score=72.63 Aligned_cols=106 Identities=27% Similarity=0.303 Sum_probs=69.6
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~~ 109 (179)
++.+|||||||+|..+..++++.+ ..+|+++|+++.. ..++++++.+|+.+.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~-------------~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~---- 93 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGP-------------DAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEA---- 93 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTST-------------CEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT----
T ss_pred cCCeEEEecCChHHHHHHHHHhCC-------------CCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccc----
Confidence 677999999999999999998865 4689999999942 244588999999874
Q ss_pred HHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHHHH-------HH------HHHHHHHHHhhceEEEe
Q 030299 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSIQF-------FI------YELVFCLRQLLQYVILD 172 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~~~-------~~------~~~~~~~~~~f~~v~~~ 172 (179)
+++.+||+|+++.+.. .|. ........+++..|.+.. ++ ...+ ++++|..|++.
T Consensus 94 -----~~~~~fD~Iv~NPP~~-~~~-~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~--l~~~f~~~~~~ 160 (170)
T PF05175_consen 94 -----LPDGKFDLIVSNPPFH-AGG-DDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERL--LKELFGDVEVV 160 (170)
T ss_dssp -----CCTTCEEEEEE---SB-TTS-HCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHH--HHHHHS--EEE
T ss_pred -----ccccceeEEEEccchh-ccc-ccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHH--HHHhcCCEEEE
Confidence 3457899999996522 222 112234455555554431 11 2222 89999999864
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.9e-07 Score=73.88 Aligned_cols=70 Identities=26% Similarity=0.252 Sum_probs=55.8
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhH
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~ 108 (179)
++++.+|||+|||+|.|+..+++..++ .+.|+|+|+++.. ...++.++.+|+.+.+
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~------------~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-- 82 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGP------------EGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLP-- 82 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCC------------CcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCC--
Confidence 367889999999999999999998743 5799999999831 1357888999988754
Q ss_pred HHHHhhcCCCCccEEeeCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~ 128 (179)
+.+.+||+|+++..
T Consensus 83 ------~~~~~~D~v~~~~~ 96 (241)
T PRK08317 83 ------FPDGSFDAVRSDRV 96 (241)
T ss_pred ------CCCCCceEEEEech
Confidence 34568999998764
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.2e-07 Score=78.06 Aligned_cols=67 Identities=24% Similarity=0.270 Sum_probs=51.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC-CC--CCCCeeEEeccccchhhHHHHHhhcC
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP-MA--PIEGVIQVQGDITNARTAEVVIRHFD 116 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~-~~--~~~~v~~i~gDi~~~~~~~~l~~~~~ 116 (179)
.++.+|||||||||..+..++++.+ ..|+|+|+++ |- ......++++|+.+.+ ++
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~~--------------~~v~gvD~S~~Ml~~a~~~~~~~~~d~~~lp--------~~ 107 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVFK--------------YYVVALDYAENMLKMNLVADDKVVGSFEALP--------FR 107 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhcC--------------CEEEEECCCHHHHHHHHhccceEEechhhCC--------CC
Confidence 4578999999999999999988752 6899999998 31 1112346788888764 56
Q ss_pred CCCccEEeeCCC
Q 030299 117 GCKADLVVCDGA 128 (179)
Q Consensus 117 ~~~~D~VlsD~~ 128 (179)
+++||+|++..+
T Consensus 108 d~sfD~v~~~~~ 119 (226)
T PRK05785 108 DKSFDVVMSSFA 119 (226)
T ss_pred CCCEEEEEecCh
Confidence 789999999764
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.58 E-value=2e-07 Score=72.86 Aligned_cols=68 Identities=16% Similarity=0.245 Sum_probs=54.7
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CCCCCeeEEeccccchhhHHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~~~~~v~~i~gDi~~~~~~~~ 110 (179)
.++.+|||+|||+|..+..++++ . .+|+|+|+++. ....+++++++|+.+.+
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~-~--------------~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~---- 72 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLER-A--------------ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFD---- 72 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhc-C--------------CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCC----
Confidence 56789999999999999999987 2 68999999983 12357999999998864
Q ss_pred HHhhcCCCCccEEeeCCCCC
Q 030299 111 VIRHFDGCKADLVVCDGAPD 130 (179)
Q Consensus 111 l~~~~~~~~~D~VlsD~~~~ 130 (179)
+++..+|.|++|.+.+
T Consensus 73 ----~~~~~~d~vi~n~Py~ 88 (169)
T smart00650 73 ----LPKLQPYKVVGNLPYN 88 (169)
T ss_pred ----ccccCCCEEEECCCcc
Confidence 2334689999997654
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.2e-07 Score=80.38 Aligned_cols=81 Identities=17% Similarity=0.076 Sum_probs=57.8
Q ss_pred hhhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------------C
Q 030299 24 RSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------P 91 (179)
Q Consensus 24 Raa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------------~ 91 (179)
|+.+|...+......+ +|.+|||||||+|.++..++...+ ..|+|+|+++.. .
T Consensus 106 ~s~~k~~~l~~~l~~l-~g~~VLDIGCG~G~~~~~la~~g~--------------~~V~GiD~S~~~l~q~~a~~~~~~~ 170 (322)
T PRK15068 106 RSDWKWDRVLPHLSPL-KGRTVLDVGCGNGYHMWRMLGAGA--------------KLVVGIDPSQLFLCQFEAVRKLLGN 170 (322)
T ss_pred hHHhHHHHHHHhhCCC-CCCEEEEeccCCcHHHHHHHHcCC--------------CEEEEEcCCHHHHHHHHHHHHhcCC
Confidence 3444444443344333 578999999999999999988732 479999999831 1
Q ss_pred CCCeeEEeccccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 92 IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 92 ~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
..++.++.+|+.+.+ + ...||+|+|-+.
T Consensus 171 ~~~i~~~~~d~e~lp--------~-~~~FD~V~s~~v 198 (322)
T PRK15068 171 DQRAHLLPLGIEQLP--------A-LKAFDTVFSMGV 198 (322)
T ss_pred CCCeEEEeCCHHHCC--------C-cCCcCEEEECCh
Confidence 247889999988754 2 468999999764
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.2e-07 Score=75.01 Aligned_cols=70 Identities=9% Similarity=0.056 Sum_probs=54.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCeeEEeccc-cchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDI-TNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~~~v~~i~gDi-~~~~~ 107 (179)
+++.+|||||||+|.++..++++.+ ...|+|+|+++- ...+++.++++|+ ...+
T Consensus 39 ~~~~~VLDiGcGtG~~~~~la~~~p-------------~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~- 104 (202)
T PRK00121 39 NDAPIHLEIGFGKGEFLVEMAKANP-------------DINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLL- 104 (202)
T ss_pred CCCCeEEEEccCCCHHHHHHHHHCC-------------CccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHH-
Confidence 3577999999999999999998865 478999999982 1246899999998 4322
Q ss_pred HHHHHhhcCCCCccEEeeCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~ 128 (179)
..+++..||.|++..+
T Consensus 105 -----~~~~~~~~D~V~~~~~ 120 (202)
T PRK00121 105 -----DMFPDGSLDRIYLNFP 120 (202)
T ss_pred -----HHcCccccceEEEECC
Confidence 1244568999998754
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.2e-07 Score=67.75 Aligned_cols=66 Identities=29% Similarity=0.439 Sum_probs=46.8
Q ss_pred EEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHHHHHhh
Q 030299 45 VVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEVVIRH 114 (179)
Q Consensus 45 VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~~l~~~ 114 (179)
|||||||+|..+..+.+..+. ++...++|+|+++.. ....++++++|+.+.+.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~----------~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~------- 63 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDA----------GPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPF------- 63 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS---------------SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHH-------
T ss_pred CEEeecCCcHHHHHHHHHhhh----------cccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcc-------
Confidence 799999999999999988621 013799999999831 12488999999988642
Q ss_pred cCCCCccEEeeCCC
Q 030299 115 FDGCKADLVVCDGA 128 (179)
Q Consensus 115 ~~~~~~D~VlsD~~ 128 (179)
.+++||+|++.+.
T Consensus 64 -~~~~~D~v~~~~~ 76 (101)
T PF13649_consen 64 -SDGKFDLVVCSGL 76 (101)
T ss_dssp -HSSSEEEEEE-TT
T ss_pred -cCCCeeEEEEcCC
Confidence 3468999999554
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.5e-07 Score=73.51 Aligned_cols=64 Identities=20% Similarity=0.234 Sum_probs=50.3
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCeeEEeccccchhhHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~~~v~~i~gDi~~~~~~~ 109 (179)
++.+|||+|||+|..+.+++++ ...|+|+|+++. ....+++++.+|+.+.+
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~---------------g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~--- 91 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN---------------GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLT--- 91 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC---------------CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCC---
Confidence 5579999999999999999986 268999999983 12456778888887643
Q ss_pred HHHhhcCCCCccEEeeCCC
Q 030299 110 VVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~ 128 (179)
+ +.+||+|++.+.
T Consensus 92 -----~-~~~fD~I~~~~~ 104 (197)
T PRK11207 92 -----F-DGEYDFILSTVV 104 (197)
T ss_pred -----c-CCCcCEEEEecc
Confidence 2 357999999765
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.1e-07 Score=72.94 Aligned_cols=69 Identities=10% Similarity=0.068 Sum_probs=54.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCC-CeeEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~-~v~~i~gDi~~~~~ 107 (179)
+++.+|||+|||+|..+..+++..+. .++|+|+|+++.. .+. +++++.+|..+...
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~------------~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~ 138 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIER------------RGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE 138 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCC------------CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc
Confidence 67899999999999999999998753 4799999999831 122 48889999876421
Q ss_pred HHHHHhhcCCCCccEEeeCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~ 128 (179)
...+||+|+++++
T Consensus 139 --------~~~~fD~Ii~~~~ 151 (205)
T PRK13944 139 --------KHAPFDAIIVTAA 151 (205)
T ss_pred --------cCCCccEEEEccC
Confidence 2358999999876
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.6e-07 Score=80.82 Aligned_cols=72 Identities=15% Similarity=0.115 Sum_probs=52.5
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CC--CCeeEEeccccchhhHHH
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI--EGVIQVQGDITNARTAEV 110 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~--~~v~~i~gDi~~~~~~~~ 110 (179)
+++|.+|||||||+|+++.+++++.+ .+|+|+|+++.. .. .++++..+|..+.
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~g--------------~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l----- 225 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHYG--------------VSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL----- 225 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHCC--------------CEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc-----
Confidence 37899999999999999999998753 689999999842 11 2466666766542
Q ss_pred HHhhcCCCCccEEeeCCCCCCCCCC
Q 030299 111 VIRHFDGCKADLVVCDGAPDVTGLH 135 (179)
Q Consensus 111 l~~~~~~~~~D~VlsD~~~~~~g~~ 135 (179)
+++||.|++.+.....|..
T Consensus 226 ------~~~fD~Ivs~~~~ehvg~~ 244 (383)
T PRK11705 226 ------NGQFDRIVSVGMFEHVGPK 244 (383)
T ss_pred ------CCCCCEEEEeCchhhCChH
Confidence 2579999987654444433
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.48 E-value=2e-07 Score=74.34 Aligned_cols=74 Identities=22% Similarity=0.258 Sum_probs=54.5
Q ss_pred hCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCeeEEeccccchhhHHHH
Q 030299 36 FNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 36 ~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----~~~~v~~i~gDi~~~~~~~~l 111 (179)
...++++.+|||+|||+|.++..+++.. ...++|+|+++.. ...+++++++|+.+...
T Consensus 8 ~~~i~~~~~iLDiGcG~G~~~~~l~~~~--------------~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~---- 69 (194)
T TIGR02081 8 LNLIPPGSRVLDLGCGDGELLALLRDEK--------------QVRGYGIEIDQDGVLACVARGVNVIQGDLDEGLE---- 69 (194)
T ss_pred HHhcCCCCEEEEeCCCCCHHHHHHHhcc--------------CCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhccc----
Confidence 3445788899999999999999887764 2578999999731 13578889999875210
Q ss_pred HhhcCCCCccEEeeCCCC
Q 030299 112 IRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 112 ~~~~~~~~~D~VlsD~~~ 129 (179)
.+++++||+|++..+.
T Consensus 70 --~~~~~sfD~Vi~~~~l 85 (194)
T TIGR02081 70 --AFPDKSFDYVILSQTL 85 (194)
T ss_pred --ccCCCCcCEEEEhhHh
Confidence 1345689999997653
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.9e-07 Score=79.66 Aligned_cols=68 Identities=16% Similarity=0.154 Sum_probs=54.2
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------C-CCCeeEEeccccchhhH
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-IEGVIQVQGDITNARTA 108 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~-~~~v~~i~gDi~~~~~~ 108 (179)
++++.+|||+|||+|..+..++...+ ..|+|+|+++.. . ..+++++++|+.+.+
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~~--------------~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~-- 327 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENFD--------------VHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKT-- 327 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhcC--------------CEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCC--
Confidence 47788999999999999999988753 689999999731 1 236889999998754
Q ss_pred HHHHhhcCCCCccEEeeCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~ 128 (179)
+++++||+|+|...
T Consensus 328 ------~~~~~fD~I~s~~~ 341 (475)
T PLN02336 328 ------YPDNSFDVIYSRDT 341 (475)
T ss_pred ------CCCCCEEEEEECCc
Confidence 35568999999754
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.2e-07 Score=75.49 Aligned_cols=67 Identities=13% Similarity=0.105 Sum_probs=52.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------C-CCCeeEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~-~~~v~~i~gDi~~~~~ 107 (179)
.++.+|||+|||+|.++..++++ ...|+|+|+++.. . .++++++++|+.+...
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~---------------g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~ 107 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL---------------GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQ 107 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc---------------CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhh
Confidence 45679999999999999999886 2689999999821 1 2468899999987532
Q ss_pred HHHHHhhcCCCCccEEeeCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~ 128 (179)
+.++.||+|++...
T Consensus 108 -------~~~~~fD~V~~~~v 121 (255)
T PRK11036 108 -------HLETPVDLILFHAV 121 (255)
T ss_pred -------hcCCCCCEEEehhH
Confidence 23468999998754
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=4e-07 Score=76.48 Aligned_cols=72 Identities=15% Similarity=0.178 Sum_probs=55.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC------CCCCCeeEEeccccchhhHHHHHh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------APIEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~------~~~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
.+..+|||+|||+|.++..+++..+.. ....|+|+|+++. +..+++.+..+|+.+.+
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~----------~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp------- 146 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEI----------TTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLP------- 146 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccc----------cCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCC-------
Confidence 356789999999999999998876420 1247999999983 23568889999998864
Q ss_pred hcCCCCccEEeeCCCC
Q 030299 114 HFDGCKADLVVCDGAP 129 (179)
Q Consensus 114 ~~~~~~~D~VlsD~~~ 129 (179)
++++.||+|++..+|
T Consensus 147 -~~~~sfD~I~~~~~~ 161 (272)
T PRK11088 147 -FADQSLDAIIRIYAP 161 (272)
T ss_pred -CcCCceeEEEEecCC
Confidence 456789999986653
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.46 E-value=1e-06 Score=63.85 Aligned_cols=69 Identities=22% Similarity=0.306 Sum_probs=52.8
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchhhHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNARTAE 109 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~~~~ 109 (179)
|.+|||+|||+|.++..+++.. ...++|+|++|.. .. ..++++++|+++..
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--------------~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--- 63 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--------------AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLP--- 63 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--------------TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHH---
T ss_pred CCEEEEcCcchHHHHHHHHHHC--------------CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhch---
Confidence 5689999999999999999875 2799999999941 12 46899999998864
Q ss_pred HHHhhcCCCCccEEeeCCCCC
Q 030299 110 VVIRHFDGCKADLVVCDGAPD 130 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~~~ 130 (179)
+.+...+||+|++|.+..
T Consensus 64 ---~~~~~~~~D~Iv~npP~~ 81 (117)
T PF13659_consen 64 ---EPLPDGKFDLIVTNPPYG 81 (117)
T ss_dssp ---HTCTTT-EEEEEE--STT
T ss_pred ---hhccCceeEEEEECCCCc
Confidence 224567999999998754
|
... |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.5e-07 Score=62.45 Aligned_cols=62 Identities=23% Similarity=0.331 Sum_probs=48.0
Q ss_pred EEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC--------CCCCCeeEEeccccchhhHHHHHhhcCC
Q 030299 46 VDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM--------APIEGVIQVQGDITNARTAEVVIRHFDG 117 (179)
Q Consensus 46 lDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~--------~~~~~v~~i~gDi~~~~~~~~l~~~~~~ 117 (179)
||+|||+|..+..++++ + ...|+++|+++. ....++.++++|+++.+ +++
T Consensus 1 LdiG~G~G~~~~~l~~~-~-------------~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--------~~~ 58 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-G-------------GASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLP--------FPD 58 (95)
T ss_dssp EEET-TTSHHHHHHHHT-T-------------TCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSS--------S-T
T ss_pred CEecCcCCHHHHHHHhc-c-------------CCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCc--------ccc
Confidence 89999999999999998 4 489999999983 12356779999999986 567
Q ss_pred CCccEEeeCCCC
Q 030299 118 CKADLVVCDGAP 129 (179)
Q Consensus 118 ~~~D~VlsD~~~ 129 (179)
+.||+|++....
T Consensus 59 ~sfD~v~~~~~~ 70 (95)
T PF08241_consen 59 NSFDVVFSNSVL 70 (95)
T ss_dssp T-EEEEEEESHG
T ss_pred ccccccccccce
Confidence 899999997653
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.7e-07 Score=73.36 Aligned_cols=80 Identities=21% Similarity=0.215 Sum_probs=58.1
Q ss_pred hhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------CC--CC
Q 030299 25 SAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PI--EG 94 (179)
Q Consensus 25 aa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------~~--~~ 94 (179)
....|.+...... +.++.+|||+|||+|.++..++.. + ..+|+++|+++.. .. .+
T Consensus 21 ds~~l~~~l~~~~-~~~~~~vLDlGcG~G~~~~~la~~-~-------------~~~v~~vD~s~~~l~~a~~n~~~~~~~ 85 (223)
T PRK14967 21 DTQLLADALAAEG-LGPGRRVLDLCTGSGALAVAAAAA-G-------------AGSVTAVDISRRAVRSARLNALLAGVD 85 (223)
T ss_pred cHHHHHHHHHhcc-cCCCCeEEEecCCHHHHHHHHHHc-C-------------CCeEEEEECCHHHHHHHHHHHHHhCCe
Confidence 4455666555544 367889999999999999998875 3 2589999999831 01 24
Q ss_pred eeEEeccccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 95 VIQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 95 v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
+.++.+|+.+. +++.+||+|++|.+
T Consensus 86 ~~~~~~d~~~~---------~~~~~fD~Vi~npP 110 (223)
T PRK14967 86 VDVRRGDWARA---------VEFRPFDVVVSNPP 110 (223)
T ss_pred eEEEECchhhh---------ccCCCeeEEEECCC
Confidence 67778888663 23468999999974
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.1e-07 Score=79.00 Aligned_cols=104 Identities=20% Similarity=0.179 Sum_probs=71.0
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART 107 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~ 107 (179)
++||++|||+||+|||.|..+.+.+-. ....+.|+|.|..+.. +.++......|+...+.
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~---------~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~ 223 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHK---------DPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPN 223 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhc---------CCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccc
Confidence 378999999999999999988887642 0125799999999841 33455555666665543
Q ss_pred HH--HHHhhcCCCCccEEeeCCCCCCCCC-----------Cccc-----HHHHHHHHHHHHHH
Q 030299 108 AE--VVIRHFDGCKADLVVCDGAPDVTGL-----------HDMD-----EFVQSQLILAVSIQ 152 (179)
Q Consensus 108 ~~--~l~~~~~~~~~D~VlsD~~~~~~g~-----------~~~d-----~~~q~~L~~~AL~~ 152 (179)
.. .-. ......||-||+|..|+..|. |+.+ |.+|++|+..+|..
T Consensus 224 ~~~~~~~-~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~l 285 (375)
T KOG2198|consen 224 IYLKDGN-DKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRL 285 (375)
T ss_pred cccccCc-hhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHH
Confidence 21 000 012247999999999988765 2222 46788888888774
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=98.42 E-value=1e-06 Score=76.99 Aligned_cols=72 Identities=19% Similarity=0.278 Sum_probs=56.2
Q ss_pred hCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------CCCCeeEEeccccchhh
Q 030299 36 FNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIEGVIQVQGDITNART 107 (179)
Q Consensus 36 ~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------~~~~v~~i~gDi~~~~~ 107 (179)
..+-+++.+|||||||+|.++..+++..+ ...|+++|+++.. +..+++++.+|+.+.+
T Consensus 108 ~~l~~~~~~VLDLGcGtG~~~l~La~~~~-------------~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp- 173 (340)
T PLN02490 108 ADLSDRNLKVVDVGGGTGFTTLGIVKHVD-------------AKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLP- 173 (340)
T ss_pred cccCCCCCEEEEEecCCcHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCC-
Confidence 33335788999999999999999988765 4689999999731 2457889999998754
Q ss_pred HHHHHhhcCCCCccEEeeCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~ 128 (179)
++++.||+|++...
T Consensus 174 -------~~~~sFDvVIs~~~ 187 (340)
T PLN02490 174 -------FPTDYADRYVSAGS 187 (340)
T ss_pred -------CCCCceeEEEEcCh
Confidence 34568999999654
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=98.40 E-value=8.4e-07 Score=72.53 Aligned_cols=69 Identities=28% Similarity=0.359 Sum_probs=54.6
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~~ 109 (179)
++.+|||+|||+|.++..++...+ ...|+|+|+++.. ...++.++.+|+.+.
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~-------------~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~---- 149 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERP-------------DARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEP---- 149 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhcc----
Confidence 456899999999999999998865 4799999999831 244688999998763
Q ss_pred HHHhhcCCCCccEEeeCCCCCC
Q 030299 110 VVIRHFDGCKADLVVCDGAPDV 131 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~~~~ 131 (179)
++..+||+|++|.+...
T Consensus 150 -----~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 150 -----LPGGKFDLIVSNPPYIP 166 (251)
T ss_pred -----CcCCceeEEEECCCCCc
Confidence 23468999999876544
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.2e-06 Score=69.32 Aligned_cols=66 Identities=23% Similarity=0.261 Sum_probs=51.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
.++.+|||+|||+|.++..++++.+ ..+|+++|+++.. ...+++++.+|+...
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~-------------~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~--- 93 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFP-------------SLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE--- 93 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh---
Confidence 5788999999999999999998764 5799999999831 135688888886421
Q ss_pred HHHHhhcCCCCccEEeeCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~ 128 (179)
++ ..||+|++++.
T Consensus 94 ------~~-~~~D~v~~~~~ 106 (187)
T PRK08287 94 ------LP-GKADAIFIGGS 106 (187)
T ss_pred ------cC-cCCCEEEECCC
Confidence 22 47999999764
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=1e-06 Score=71.99 Aligned_cols=72 Identities=22% Similarity=0.167 Sum_probs=51.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------CCCCeeEEeccccchhhHHHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------~~~~v~~i~gDi~~~~~~~~l 111 (179)
.++.+|||||||+|.++..+++..... +....|+|+|+++.. ..+++.+..+|..+.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~---------g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~----- 124 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRD---------GLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELV----- 124 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhC---------CCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEeccccc-----
Confidence 467799999999999999988754210 113589999999831 1346777777665543
Q ss_pred HhhcCCCCccEEeeCCC
Q 030299 112 IRHFDGCKADLVVCDGA 128 (179)
Q Consensus 112 ~~~~~~~~~D~VlsD~~ 128 (179)
..++.||+|++...
T Consensus 125 ---~~~~~fD~V~~~~~ 138 (232)
T PRK06202 125 ---AEGERFDVVTSNHF 138 (232)
T ss_pred ---ccCCCccEEEECCe
Confidence 13468999999765
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.8e-06 Score=74.10 Aligned_cols=86 Identities=22% Similarity=0.227 Sum_probs=63.5
Q ss_pred HHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CCCCeeEEe
Q 030299 29 LLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQ 99 (179)
Q Consensus 29 L~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~~~~v~~i~ 99 (179)
|.|+.+.+.+ ++|..++|++||.||.|..+++..++ .++|+|+|.+|.. ...++++++
T Consensus 8 l~Evl~~L~~-~pg~~vlD~TlG~GGhS~~il~~~~~------------~g~VigiD~D~~al~~ak~~L~~~~ri~~i~ 74 (296)
T PRK00050 8 LDEVVDALAI-KPDGIYVDGTFGGGGHSRAILERLGP------------KGRLIAIDRDPDAIAAAKDRLKPFGRFTLVH 74 (296)
T ss_pred HHHHHHhhCC-CCCCEEEEeCcCChHHHHHHHHhCCC------------CCEEEEEcCCHHHHHHHHHhhccCCcEEEEe
Confidence 3444444543 67889999999999999999999853 5899999999931 124799999
Q ss_pred ccccchhhHHHHHhhcCCCCccEEeeCCCCCC
Q 030299 100 GDITNARTAEVVIRHFDGCKADLVVCDGAPDV 131 (179)
Q Consensus 100 gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~ 131 (179)
+|+.+.... ... .-.+||.|+.|...+.
T Consensus 75 ~~f~~l~~~---l~~-~~~~vDgIl~DLGvSs 102 (296)
T PRK00050 75 GNFSNLKEV---LAE-GLGKVDGILLDLGVSS 102 (296)
T ss_pred CCHHHHHHH---HHc-CCCccCEEEECCCccc
Confidence 999886421 111 1137999999997655
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.6e-07 Score=75.50 Aligned_cols=118 Identities=17% Similarity=0.178 Sum_probs=78.6
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CCCCeeEEeccccchhhHHHHHhh
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRH 114 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~~~v~~i~gDi~~~~~~~~l~~~ 114 (179)
.+.+|||+|||+|.++..+++++..+ +...|+|+|+++.. ..+++.++++|+.+..
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~----------~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~-------- 110 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYA----------KPREIVCVELNHTYYKLGKRIVPEATWINADALTTE-------- 110 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccC----------CCcEEEEEECCHHHHHHHHhhccCCEEEEcchhccc--------
Confidence 36799999999999999998875310 14689999999942 3457889999997643
Q ss_pred cCCCCccEEeeCCCCCCCCCCcc-----cHHHHHHHHHHHHHHH----H-----HHHHHHHHHHhhceEEEeeeeee
Q 030299 115 FDGCKADLVVCDGAPDVTGLHDM-----DEFVQSQLILAVSIQF----F-----IYELVFCLRQLLQYVILDGSYFC 177 (179)
Q Consensus 115 ~~~~~~D~VlsD~~~~~~g~~~~-----d~~~q~~L~~~AL~~~----~-----~~~~~~~~~~~f~~v~~~~~~~~ 177 (179)
+ ..+||+|+++.+.......+. +......++..|++.. | +...=|..++.|++++-.++=-|
T Consensus 111 ~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~~~~~y~~~~~~~~~~~~~~~~~ 186 (241)
T PHA03412 111 F-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMSANFRYSGTHYFRQDESTTSSKC 186 (241)
T ss_pred c-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCcccccCcccCccceeeccCcccHHH
Confidence 2 348999999987654333221 2233455666666522 1 13344777888877776554433
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.3e-06 Score=74.32 Aligned_cols=67 Identities=30% Similarity=0.446 Sum_probs=52.8
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchhhH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNARTA 108 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~~~ 108 (179)
++.+|||+|||+|.++..++.+.+ ..+|+|+|+++.. .+ .++.++++|+.+.
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~-------------~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~--- 184 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFP-------------EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA--- 184 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc---
Confidence 457999999999999999998865 5799999999831 12 3588999998753
Q ss_pred HHHHhhcCCCCccEEeeCCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~ 129 (179)
+++.+||+|++|.+-
T Consensus 185 ------~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 185 ------LPGRKYDLIVSNPPY 199 (284)
T ss_pred ------cCCCCccEEEECCCC
Confidence 234579999999653
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.6e-06 Score=70.01 Aligned_cols=68 Identities=22% Similarity=0.204 Sum_probs=52.6
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------C---CCCeeEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P---IEGVIQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~---~~~v~~i~gDi~~~~~ 107 (179)
.++.+|||+|||+|.++..++...+. ..+|+++|+++.. . ..++.++.+|+.+.+
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~------------~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~- 116 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGK------------TGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP- 116 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCC------------CCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC-
Confidence 46789999999999999999998742 4799999998731 1 246888899998754
Q ss_pred HHHHHhhcCCCCccEEeeCC
Q 030299 108 AEVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~ 127 (179)
+....||+|++..
T Consensus 117 -------~~~~~~D~I~~~~ 129 (239)
T PRK00216 117 -------FPDNSFDAVTIAF 129 (239)
T ss_pred -------CCCCCccEEEEec
Confidence 2345799998754
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.2e-06 Score=70.18 Aligned_cols=71 Identities=8% Similarity=0.102 Sum_probs=55.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~~~v~~i~gDi~~~~~~ 108 (179)
++..+|||||||+|.++..++++.+ ...|+|+|+++. ..+.|+.++++|+.+...
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~p-------------~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~- 80 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQNP-------------DKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLD- 80 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhCC-------------CCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHH-
Confidence 4567999999999999999998875 579999999983 125689999999987431
Q ss_pred HHHHhhcCCCCccEEeeCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~ 128 (179)
..+++..+|.|+++.+
T Consensus 81 ----~~~~~~~~d~v~~~~p 96 (194)
T TIGR00091 81 ----KFFPDGSLSKVFLNFP 96 (194)
T ss_pred ----hhCCCCceeEEEEECC
Confidence 1234458999998764
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.4e-06 Score=69.84 Aligned_cols=70 Identities=20% Similarity=0.101 Sum_probs=48.8
Q ss_pred HhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------CCC--CeeEEeccccc
Q 030299 35 EFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIE--GVIQVQGDITN 104 (179)
Q Consensus 35 ~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------~~~--~v~~i~gDi~~ 104 (179)
.....+ +.+|||+|||+|.++.+++++ ...|+|+|+++.. ... .+....+|+.+
T Consensus 25 ~~~~~~-~~~vLDiGcG~G~~a~~la~~---------------g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~ 88 (195)
T TIGR00477 25 AVKTVA-PCKTLDLGCGQGRNSLYLSLA---------------GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINA 88 (195)
T ss_pred HhccCC-CCcEEEeCCCCCHHHHHHHHC---------------CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchh
Confidence 334433 569999999999999999985 3689999999831 012 25566667654
Q ss_pred hhhHHHHHhhcCCCCccEEeeCCCC
Q 030299 105 ARTAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 105 ~~~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
.+ ++ .+||+|++.+..
T Consensus 89 ~~--------~~-~~fD~I~~~~~~ 104 (195)
T TIGR00477 89 AA--------LN-EDYDFIFSTVVF 104 (195)
T ss_pred cc--------cc-CCCCEEEEeccc
Confidence 32 23 479999987653
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.6e-06 Score=75.24 Aligned_cols=69 Identities=23% Similarity=0.234 Sum_probs=52.6
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCeeEEeccccchhh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNART 107 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~~~v~~i~gDi~~~~~ 107 (179)
++++.+|||+|||+|.++..+++..+. .+.|+++|+++. ....++.++++|..+...
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~------------~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~ 145 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGE------------KGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVP 145 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCC------------CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccc
Confidence 367899999999999999999998752 468999999982 134678899999765321
Q ss_pred HHHHHhhcCCCCccEEeeCC
Q 030299 108 AEVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~ 127 (179)
...+||+|+++.
T Consensus 146 --------~~~~fD~Ii~~~ 157 (322)
T PRK13943 146 --------EFAPYDVIFVTV 157 (322)
T ss_pred --------ccCCccEEEECC
Confidence 124688888764
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.4e-06 Score=74.03 Aligned_cols=70 Identities=21% Similarity=0.279 Sum_probs=55.1
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC------CCCCCeeEEeccccchhhHHHHHhh
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------APIEGVIQVQGDITNARTAEVVIRH 114 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~------~~~~~v~~i~gDi~~~~~~~~l~~~ 114 (179)
++.+|||+|||+|.++..++.+.+ ...|+|+|+++. +..+++.++++|+.+..
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~-------------~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~-------- 122 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCK-------------PEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFE-------- 122 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCC-------------CCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhc--------
Confidence 456999999999999999888753 368999999993 12467889999998742
Q ss_pred cCCCCccEEeeCCCCCCC
Q 030299 115 FDGCKADLVVCDGAPDVT 132 (179)
Q Consensus 115 ~~~~~~D~VlsD~~~~~~ 132 (179)
.+.+||+|++|.+....
T Consensus 123 -~~~kFDlIIsNPPF~~l 139 (279)
T PHA03411 123 -SNEKFDVVISNPPFGKI 139 (279)
T ss_pred -ccCCCcEEEEcCCcccc
Confidence 23579999999876543
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.2e-06 Score=75.90 Aligned_cols=108 Identities=15% Similarity=0.162 Sum_probs=69.2
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------C---CCCeeEEeccccchhh
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P---IEGVIQVQGDITNART 107 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~---~~~v~~i~gDi~~~~~ 107 (179)
+.+|||||||+|..+..++++.+ ..+|+++|++++. . ..+++++.+|+.+.
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P-------------~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-- 293 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNP-------------QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-- 293 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCC-------------CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc--
Confidence 45899999999999999999865 5899999999852 0 12567888887653
Q ss_pred HHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHHHH-------HH----HHHHHHHHHhhceEEEee
Q 030299 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSIQF-------FI----YELVFCLRQLLQYVILDG 173 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~~~-------~~----~~~~~~~~~~f~~v~~~~ 173 (179)
+.+.+||+|+|+.++.. +....++ .-.++...+-+.. ++ ....-.|+++|..+++.+
T Consensus 294 -------~~~~~fDlIlsNPPfh~-~~~~~~~-ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~fg~~~~va 361 (378)
T PRK15001 294 -------VEPFRFNAVLCNPPFHQ-QHALTDN-VAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFGNCTTIA 361 (378)
T ss_pred -------CCCCCEEEEEECcCccc-CccCCHH-HHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHHcCCceEEc
Confidence 23457999999876543 3222222 2223333332221 11 122346788888887653
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.1e-06 Score=70.49 Aligned_cols=69 Identities=19% Similarity=0.121 Sum_probs=52.3
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------C---CCCeeEEeccccchh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P---IEGVIQVQGDITNAR 106 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~---~~~v~~i~gDi~~~~ 106 (179)
+.++.+|||||||+|.++..++++... +...|+|+|+++.. . ..+++++++|+.+.+
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~-----------p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~ 119 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQ-----------PNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE 119 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCC-----------CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC
Confidence 467889999999999999999987631 25899999999721 1 236889999998754
Q ss_pred hHHHHHhhcCCCCccEEeeCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
+ ..+|+|++..+
T Consensus 120 --------~--~~~d~v~~~~~ 131 (239)
T TIGR00740 120 --------I--KNASMVILNFT 131 (239)
T ss_pred --------C--CCCCEEeeecc
Confidence 2 35788887654
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.5e-06 Score=74.70 Aligned_cols=65 Identities=20% Similarity=0.174 Sum_probs=50.9
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~~ 109 (179)
++.+|||+|||+|.++..++.+ ...|+|+|+++.. .+.+++++++|+.+...
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~---------------~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~-- 235 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP---------------GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFAT-- 235 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc---------------CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHH--
Confidence 4689999999999999999884 3689999999831 24579999999976421
Q ss_pred HHHhhcCCCCccEEeeCC
Q 030299 110 VVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~ 127 (179)
. ....||+|++|.
T Consensus 236 ----~-~~~~~D~Vv~dP 248 (315)
T PRK03522 236 ----A-QGEVPDLVLVNP 248 (315)
T ss_pred ----h-cCCCCeEEEECC
Confidence 1 124699999994
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.2e-06 Score=76.03 Aligned_cols=65 Identities=17% Similarity=0.128 Sum_probs=50.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------C-CCCeeEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~-~~~v~~i~gDi~~~~~ 107 (179)
.++.+|||||||+|.+++.+++. ...|+|+|+++.. + ..+++++++|+.+..
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~---------------g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~- 193 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARM---------------GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLA- 193 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHc---------------CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhh-
Confidence 35779999999999999998863 3689999999831 1 136889999987653
Q ss_pred HHHHHhhcCCCCccEEeeCC
Q 030299 108 AEVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~ 127 (179)
+.++.||+|++-.
T Consensus 194 -------~~~~~FD~Vi~~~ 206 (322)
T PLN02396 194 -------DEGRKFDAVLSLE 206 (322)
T ss_pred -------hccCCCCEEEEhh
Confidence 2346899999854
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.31 E-value=9e-07 Score=72.34 Aligned_cols=71 Identities=18% Similarity=0.265 Sum_probs=54.1
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCeeEEeccccchhh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNART 107 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~~~v~~i~gDi~~~~~ 107 (179)
++||++|||||||+|..|-.++..++. .+.|+++|+.+- ..+.||.++.+|...-..
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~------------~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~ 137 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGP------------VGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWP 137 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHST------------TEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTG
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCc------------cceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccc
Confidence 589999999999999999999999874 578999999983 135699999999876432
Q ss_pred HHHHHhhcCCCCccEEeeCCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
...+||.|++.++.
T Consensus 138 --------~~apfD~I~v~~a~ 151 (209)
T PF01135_consen 138 --------EEAPFDRIIVTAAV 151 (209)
T ss_dssp --------GG-SEEEEEESSBB
T ss_pred --------cCCCcCEEEEeecc
Confidence 23589999998764
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.9e-06 Score=69.68 Aligned_cols=68 Identities=18% Similarity=0.268 Sum_probs=48.4
Q ss_pred HhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEecccc
Q 030299 35 EFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDIT 103 (179)
Q Consensus 35 ~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~ 103 (179)
-..++++| ++||||||.|.-+.+|+++ +..|+|+|.++.. .+ .++....|+.
T Consensus 25 a~~~~~~g-~~LDlgcG~GRNalyLA~~---------------G~~VtAvD~s~~al~~l~~~a~~~~l-~i~~~~~Dl~ 87 (192)
T PF03848_consen 25 AVPLLKPG-KALDLGCGEGRNALYLASQ---------------GFDVTAVDISPVALEKLQRLAEEEGL-DIRTRVADLN 87 (192)
T ss_dssp HCTTS-SS-EEEEES-TTSHHHHHHHHT---------------T-EEEEEESSHHHHHHHHHHHHHTT--TEEEEE-BGC
T ss_pred HHhhcCCC-cEEEcCCCCcHHHHHHHHC---------------CCeEEEEECCHHHHHHHHHHHhhcCc-eeEEEEecch
Confidence 34555554 9999999999999999997 4789999999941 12 3777788988
Q ss_pred chhhHHHHHhhcCCCCccEEeeCCC
Q 030299 104 NARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 104 ~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
+.. ++ ..+|+|+|...
T Consensus 88 ~~~--------~~-~~yD~I~st~v 103 (192)
T PF03848_consen 88 DFD--------FP-EEYDFIVSTVV 103 (192)
T ss_dssp CBS---------T-TTEEEEEEESS
T ss_pred hcc--------cc-CCcCEEEEEEE
Confidence 764 33 57999998654
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.7e-06 Score=68.17 Aligned_cols=70 Identities=16% Similarity=0.174 Sum_probs=53.1
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------C-CCCeeEEeccccchh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQVQGDITNAR 106 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~-~~~v~~i~gDi~~~~ 106 (179)
+.++.+|||+|||+|.++..++...++ .++|+++|+++.. . ..++.++.+|+.+..
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~------------~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l 105 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGE------------TGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEIL 105 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCC------------CCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhH
Confidence 368899999999999999999887653 5799999999831 1 357888888886531
Q ss_pred hHHHHHhhcCCCCccEEeeCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~ 127 (179)
... ...||.|++.+
T Consensus 106 ------~~~-~~~~D~V~~~~ 119 (198)
T PRK00377 106 ------FTI-NEKFDRIFIGG 119 (198)
T ss_pred ------hhc-CCCCCEEEECC
Confidence 112 24799999965
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.5e-06 Score=72.17 Aligned_cols=81 Identities=16% Similarity=0.057 Sum_probs=55.5
Q ss_pred hhhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------------C
Q 030299 24 RSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------P 91 (179)
Q Consensus 24 Raa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------------~ 91 (179)
|+-.|...+...... .+|.+|||+|||+|.++..++... ...|+|+|+++.. .
T Consensus 105 ~s~~~~~~~l~~l~~-~~g~~VLDvGCG~G~~~~~~~~~g--------------~~~v~GiDpS~~ml~q~~~~~~~~~~ 169 (314)
T TIGR00452 105 RSDIKWDRVLPHLSP-LKGRTILDVGCGSGYHMWRMLGHG--------------AKSLVGIDPTVLFLCQFEAVRKLLDN 169 (314)
T ss_pred HHHHHHHHHHHhcCC-CCCCEEEEeccCCcHHHHHHHHcC--------------CCEEEEEcCCHHHHHHHHHHHHHhcc
Confidence 344444444444433 457899999999999998887652 2479999999821 1
Q ss_pred CCCeeEEeccccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 92 IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 92 ~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
..++.+..+|+.+.+. ...||+|+|.+.
T Consensus 170 ~~~v~~~~~~ie~lp~---------~~~FD~V~s~gv 197 (314)
T TIGR00452 170 DKRAILEPLGIEQLHE---------LYAFDTVFSMGV 197 (314)
T ss_pred CCCeEEEECCHHHCCC---------CCCcCEEEEcch
Confidence 2356777788776531 247999999874
|
Known examples to date are restricted to the proteobacteria. |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=98.28 E-value=1e-06 Score=66.63 Aligned_cols=67 Identities=22% Similarity=0.406 Sum_probs=46.4
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-CCCCeeEEeccccchhhHHHHHhhcCC
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-PIEGVIQVQGDITNARTAEVVIRHFDG 117 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-~~~~v~~i~gDi~~~~~~~~l~~~~~~ 117 (179)
..++.+|||+|||+|.++..+++. + ..|+|+|+++.. ...++....-+..+.. .++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~-~--------------~~~~g~D~~~~~~~~~~~~~~~~~~~~~~--------~~~ 76 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR-G--------------FEVTGVDISPQMIEKRNVVFDNFDAQDPP--------FPD 76 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT-T--------------SEEEEEESSHHHHHHTTSEEEEEECHTHH--------CHS
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh-C--------------CEEEEEECCHHHHhhhhhhhhhhhhhhhh--------ccc
Confidence 578899999999999999999664 2 599999999832 1123333333333322 235
Q ss_pred CCccEEeeCCC
Q 030299 118 CKADLVVCDGA 128 (179)
Q Consensus 118 ~~~D~VlsD~~ 128 (179)
+.||+|++...
T Consensus 77 ~~fD~i~~~~~ 87 (161)
T PF13489_consen 77 GSFDLIICNDV 87 (161)
T ss_dssp SSEEEEEEESS
T ss_pred cchhhHhhHHH
Confidence 68999999764
|
... |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.7e-06 Score=69.09 Aligned_cols=68 Identities=26% Similarity=0.241 Sum_probs=51.0
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-C----------C-CCCeeEEeccccchh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-A----------P-IEGVIQVQGDITNAR 106 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-~----------~-~~~v~~i~gDi~~~~ 106 (179)
+.++.+|||||||+|..+..+++.... +..+|+|+|+++. . . ..+++++++|+.+.+
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~-----------~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~ 122 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHH-----------DNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA 122 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCC-----------CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC
Confidence 468889999999999999998886421 2589999999983 1 1 236889999987753
Q ss_pred hHHHHHhhcCCCCccEEeeCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~ 127 (179)
...+|+|++..
T Consensus 123 ----------~~~~D~vv~~~ 133 (247)
T PRK15451 123 ----------IENASMVVLNF 133 (247)
T ss_pred ----------CCCCCEEehhh
Confidence 13478887754
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.7e-06 Score=66.71 Aligned_cols=79 Identities=27% Similarity=0.276 Sum_probs=58.0
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~~ 110 (179)
.|.+|+|||||+|.++.-++-. + ..+|+|||+.|.. ..-+|.|+.+|+++..
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~l-G-------------a~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~---- 106 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALL-G-------------ASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR---- 106 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhc-C-------------CcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC----
Confidence 5778999999999999887765 3 3799999999942 1236999999999953
Q ss_pred HHhhcCCCCccEEeeCCCCCCCCCCccc-HHHHHHH
Q 030299 111 VIRHFDGCKADLVVCDGAPDVTGLHDMD-EFVQSQL 145 (179)
Q Consensus 111 l~~~~~~~~~D~VlsD~~~~~~g~~~~d-~~~q~~L 145 (179)
.++|.|+-|.++-+.... .| .+++..|
T Consensus 107 -------~~~dtvimNPPFG~~~rh-aDr~Fl~~Al 134 (198)
T COG2263 107 -------GKFDTVIMNPPFGSQRRH-ADRPFLLKAL 134 (198)
T ss_pred -------CccceEEECCCCcccccc-CCHHHHHHHH
Confidence 579999999876544222 33 4544433
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.6e-06 Score=67.93 Aligned_cols=67 Identities=15% Similarity=0.143 Sum_probs=51.9
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
+++.+|||+|||+|.++..+++.. ++|+++|+++.. .+.+++++.+|..+..
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~---------------~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-- 139 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLV---------------RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGW-- 139 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHh---------------CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCC--
Confidence 678999999999999999887763 479999999731 2457889999986531
Q ss_pred HHHHhhcCCCCccEEeeCCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~ 129 (179)
...++||+|+++.++
T Consensus 140 ------~~~~~fD~I~~~~~~ 154 (212)
T PRK00312 140 ------PAYAPFDRILVTAAA 154 (212)
T ss_pred ------CcCCCcCEEEEccCc
Confidence 123589999998753
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.8e-06 Score=71.99 Aligned_cols=64 Identities=23% Similarity=0.403 Sum_probs=51.1
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCC-CeeEEeccccchhhHHH
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNARTAEV 110 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~-~v~~i~gDi~~~~~~~~ 110 (179)
.+|||+|||+|.++..++...+ ...|+|+|+++.. ... ++.++++|+.+.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~-------------~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~----- 177 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFP-------------NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP----- 177 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc-----
Confidence 6899999999999999998865 4799999999831 233 388999998763
Q ss_pred HHhhcCCCCccEEeeCCC
Q 030299 111 VIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 111 l~~~~~~~~~D~VlsD~~ 128 (179)
+++.+||+|++|.+
T Consensus 178 ----~~~~~fDlIvsNPP 191 (284)
T TIGR00536 178 ----LAGQKIDIIVSNPP 191 (284)
T ss_pred ----CcCCCccEEEECCC
Confidence 23347999999854
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.1e-06 Score=73.19 Aligned_cols=62 Identities=26% Similarity=0.279 Sum_probs=46.8
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------CCCCee--EEeccccchhhHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIEGVI--QVQGDITNARTAEV 110 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------~~~~v~--~i~gDi~~~~~~~~ 110 (179)
+|.+|||+|||-|..|+.+++. +..|+|+|+++.. .-.++. +.+..+.+..
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~---------------Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~---- 119 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL---------------GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLA---- 119 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC---------------CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHH----
Confidence 7889999999999999999886 3789999999841 123443 5566665543
Q ss_pred HHhhcCCCCccEEee
Q 030299 111 VIRHFDGCKADLVVC 125 (179)
Q Consensus 111 l~~~~~~~~~D~Vls 125 (179)
..+++||+|+|
T Consensus 120 ----~~~~~FDvV~c 130 (243)
T COG2227 120 ----SAGGQFDVVTC 130 (243)
T ss_pred ----hcCCCccEEEE
Confidence 12379999998
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.4e-06 Score=70.10 Aligned_cols=69 Identities=26% Similarity=0.274 Sum_probs=54.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
.++.+|||+|||+|.++..++...+ ...|+|+|+++.. ...++.++.+|+.+..
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~-------------~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~-- 171 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERP-------------DAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPL-- 171 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcC--
Confidence 4567999999999999999998875 5799999999831 1347889999986642
Q ss_pred HHHHhhcCCCCccEEeeCCCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGAPD 130 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~~ 130 (179)
...+||+|++|.+..
T Consensus 172 -------~~~~fD~Iv~npPy~ 186 (275)
T PRK09328 172 -------PGGRFDLIVSNPPYI 186 (275)
T ss_pred -------CCCceeEEEECCCcC
Confidence 235899999986543
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.1e-06 Score=71.68 Aligned_cols=66 Identities=17% Similarity=0.095 Sum_probs=49.8
Q ss_pred CCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhh
Q 030299 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNART 107 (179)
Q Consensus 38 ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~ 107 (179)
.++++ +|||+|||+|..+.+++++ ...|+|+|+++.. ...++++..+|+.+..
T Consensus 118 ~~~~~-~vLDlGcG~G~~~~~la~~---------------g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~- 180 (287)
T PRK12335 118 TVKPG-KALDLGCGQGRNSLYLALL---------------GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSAS- 180 (287)
T ss_pred ccCCC-CEEEeCCCCCHHHHHHHHC---------------CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhccc-
Confidence 34554 9999999999999999885 3689999999831 1126777788887643
Q ss_pred HHHHHhhcCCCCccEEeeCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~ 128 (179)
+ ++.||+|++.+.
T Consensus 181 -------~-~~~fD~I~~~~v 193 (287)
T PRK12335 181 -------I-QEEYDFILSTVV 193 (287)
T ss_pred -------c-cCCccEEEEcch
Confidence 2 357999999764
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.23 E-value=4e-06 Score=72.40 Aligned_cols=68 Identities=18% Similarity=0.168 Sum_probs=53.3
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART 107 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~ 107 (179)
+++|.+|||+|||+|+++..++.. ...|+|+|+++.. ..+++.++++|+++.+
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~---------------~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~- 243 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLM---------------GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLP- 243 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHh---------------CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCC-
Confidence 478999999999999998876553 3689999999831 2356778899998864
Q ss_pred HHHHHhhcCCCCccEEeeCCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
+.+..||+|++|.+.
T Consensus 244 -------~~~~~~D~Iv~dPPy 258 (329)
T TIGR01177 244 -------LSSESVDAIATDPPY 258 (329)
T ss_pred -------cccCCCCEEEECCCC
Confidence 234689999999764
|
This family is found exclusively in the Archaea. |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.5e-06 Score=71.06 Aligned_cols=69 Identities=12% Similarity=0.194 Sum_probs=53.6
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------C--CCCeeEEeccccchhhHHHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P--IEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~--~~~v~~i~gDi~~~~~~~~l 111 (179)
.++++|||+|||+|..|..++++. .+|+|+|+++.. . .++++++++|+.+.+.
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~---------------~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~---- 101 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERA---------------AKVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDL---- 101 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhC---------------CcEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCH----
Confidence 678899999999999999999883 489999999831 1 2589999999998652
Q ss_pred HhhcCCCCccEEeeCCCCCC
Q 030299 112 IRHFDGCKADLVVCDGAPDV 131 (179)
Q Consensus 112 ~~~~~~~~~D~VlsD~~~~~ 131 (179)
++..++.|+++.+...
T Consensus 102 ----~~~~~~~vv~NlPY~i 117 (272)
T PRK00274 102 ----SELQPLKVVANLPYNI 117 (272)
T ss_pred ----HHcCcceEEEeCCccc
Confidence 1111589999876544
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.2e-06 Score=78.41 Aligned_cols=68 Identities=19% Similarity=0.209 Sum_probs=52.6
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC------C----CCCCeeEEeccccchhhHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------A----PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~------~----~~~~v~~i~gDi~~~~~~~~ 110 (179)
++.+|||+|||+|.++..++++.+ ...|+|+|+++. + ...++.++++|+.+.+.
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P-------------~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~--- 481 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETE-------------DKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSS--- 481 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCC-------------CCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCcc---
Confidence 578999999999999999988765 589999999983 1 11357778899877431
Q ss_pred HHhhcCCCCccEEeeCC
Q 030299 111 VIRHFDGCKADLVVCDG 127 (179)
Q Consensus 111 l~~~~~~~~~D~VlsD~ 127 (179)
.+++..||+|++..
T Consensus 482 ---~fedeSFDvVVsn~ 495 (677)
T PRK06922 482 ---SFEKESVDTIVYSS 495 (677)
T ss_pred ---ccCCCCEEEEEEch
Confidence 14557899999864
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.6e-06 Score=74.64 Aligned_cols=71 Identities=20% Similarity=0.149 Sum_probs=53.7
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------C-CCCeeEEeccccchhhH
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-IEGVIQVQGDITNARTA 108 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~-~~~v~~i~gDi~~~~~~ 108 (179)
+.++.+|||||||+|..+..++.+.+ ...|+|+|+++.. . -.+++++++|+++...
T Consensus 249 l~~~~rVLDLGcGSG~IaiaLA~~~p-------------~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l- 314 (423)
T PRK14966 249 LPENGRVWDLGTGSGAVAVTVALERP-------------DAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDM- 314 (423)
T ss_pred cCCCCEEEEEeChhhHHHHHHHHhCC-------------CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhcccc-
Confidence 35667999999999999999887754 5799999999831 1 1268899999976421
Q ss_pred HHHHhhcCCCCccEEeeCCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~ 129 (179)
....+||+|+||.+-
T Consensus 315 ------~~~~~FDLIVSNPPY 329 (423)
T PRK14966 315 ------PSEGKWDIIVSNPPY 329 (423)
T ss_pred ------ccCCCccEEEECCCC
Confidence 013479999999753
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.8e-06 Score=72.23 Aligned_cols=64 Identities=25% Similarity=0.443 Sum_probs=51.0
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchhhHHH
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNARTAEV 110 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~~~~~ 110 (179)
.+|||+|||+|.++..++.+.+ ...|+|+|+++.. .+ .+++++++|+.+.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p-------------~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~----- 196 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFP-------------DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA----- 196 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCC-------------CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-----
Confidence 6899999999999999998865 5799999999831 12 3588999998753
Q ss_pred HHhhcCCCCccEEeeCCC
Q 030299 111 VIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 111 l~~~~~~~~~D~VlsD~~ 128 (179)
+++.+||+|++|.+
T Consensus 197 ----l~~~~fDlIvsNPP 210 (307)
T PRK11805 197 ----LPGRRYDLIVSNPP 210 (307)
T ss_pred ----CCCCCccEEEECCC
Confidence 23457999999854
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=6.3e-06 Score=68.94 Aligned_cols=67 Identities=18% Similarity=0.279 Sum_probs=54.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CCCCCeeEEeccccchhhHHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~~~~~v~~i~gDi~~~~~~~~ 110 (179)
.++++|||+|||+|..|..++++ + .+|+|+|+++. ....+++++.+|+.+.+
T Consensus 28 ~~~~~VLEIG~G~G~lt~~L~~~-~--------------~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~---- 88 (258)
T PRK14896 28 TDGDPVLEIGPGKGALTDELAKR-A--------------KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVD---- 88 (258)
T ss_pred CCcCeEEEEeCccCHHHHHHHHh-C--------------CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCC----
Confidence 57899999999999999999987 2 58999999972 12457999999998754
Q ss_pred HHhhcCCCCccEEeeCCCCCC
Q 030299 111 VIRHFDGCKADLVVCDGAPDV 131 (179)
Q Consensus 111 l~~~~~~~~~D~VlsD~~~~~ 131 (179)
+ ..+|.|+++.+...
T Consensus 89 ----~--~~~d~Vv~NlPy~i 103 (258)
T PRK14896 89 ----L--PEFNKVVSNLPYQI 103 (258)
T ss_pred ----c--hhceEEEEcCCccc
Confidence 2 24799999987654
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.2e-06 Score=70.64 Aligned_cols=73 Identities=25% Similarity=0.302 Sum_probs=54.1
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------CCCCeeEEeccccchhhHHHHHh
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------~~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
+.+|||||||+|.++..++...+ ...|+|+|+++.. ...+++++++|+.+... .
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~-------------~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~-----~ 148 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALD-------------GIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALP-----T 148 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCC-------------CCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcc-----h
Confidence 45899999999999999998765 4689999999842 12356789999876421 1
Q ss_pred hcCCCCccEEeeCCCCCCCC
Q 030299 114 HFDGCKADLVVCDGAPDVTG 133 (179)
Q Consensus 114 ~~~~~~~D~VlsD~~~~~~g 133 (179)
.+ ..+||+|++|.+...++
T Consensus 149 ~~-~~~fDlVv~NPPy~~~~ 167 (251)
T TIGR03704 149 AL-RGRVDILAANAPYVPTD 167 (251)
T ss_pred hc-CCCEeEEEECCCCCCch
Confidence 12 24799999998765444
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=98.17 E-value=5e-06 Score=65.37 Aligned_cols=65 Identities=22% Similarity=0.209 Sum_probs=49.7
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~ 109 (179)
.++.+|||+|||+|.++..++++. .+|+++|+++.. ...+++++.+|+.+..
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~---------------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--- 79 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKG---------------KCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--- 79 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcC---------------CEEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc---
Confidence 345789999999999999998762 389999999831 1125778889987632
Q ss_pred HHHhhcCCCCccEEeeCCCC
Q 030299 110 VVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~~ 129 (179)
..+||+|+++.+.
T Consensus 80 -------~~~fD~Vi~n~p~ 92 (179)
T TIGR00537 80 -------RGKFDVILFNPPY 92 (179)
T ss_pred -------CCcccEEEECCCC
Confidence 2489999999753
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.2e-06 Score=66.80 Aligned_cols=68 Identities=15% Similarity=0.111 Sum_probs=52.7
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CCCCeeEEeccccchhhHHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~~~~v~~i~gDi~~~~~~~~ 110 (179)
.++.+|||+|||+|.++..+++..+. ...++++|+++.. ...++.++.+|+.+.+
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~------------~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---- 101 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPD------------RGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALP---- 101 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCC------------CceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCC----
Confidence 47889999999999999999988652 3689999998731 1246888899998754
Q ss_pred HHhhcCCCCccEEeeCC
Q 030299 111 VIRHFDGCKADLVVCDG 127 (179)
Q Consensus 111 l~~~~~~~~~D~VlsD~ 127 (179)
++.++||+|++..
T Consensus 102 ----~~~~~~D~i~~~~ 114 (223)
T TIGR01934 102 ----FEDNSFDAVTIAF 114 (223)
T ss_pred ----CCCCcEEEEEEee
Confidence 2346799998754
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=7.6e-06 Score=68.59 Aligned_cols=78 Identities=23% Similarity=0.319 Sum_probs=61.6
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------C-CCCeeEEeccccchh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQVQGDITNAR 106 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~-~~~v~~i~gDi~~~~ 106 (179)
.....+|||||||.|..+..+++|.+ ..+|+|||+++.. + -+.++++++|+.+..
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~-------------~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~ 108 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTE-------------KAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFL 108 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCC-------------CCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhh
Confidence 34478999999999999999999865 4899999999831 1 247889999998864
Q ss_pred hHHHHHhhcCCCCccEEeeCCCCCCCCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLH 135 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~~~~~g~~ 135 (179)
. ......||+|+|+.+....+..
T Consensus 109 ~------~~~~~~fD~Ii~NPPyf~~~~~ 131 (248)
T COG4123 109 K------ALVFASFDLIICNPPYFKQGSR 131 (248)
T ss_pred h------cccccccCEEEeCCCCCCCccc
Confidence 2 2333469999999987777766
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.16 E-value=5.4e-06 Score=67.14 Aligned_cols=62 Identities=24% Similarity=0.281 Sum_probs=48.6
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~~ 107 (179)
.++.+|||+|||+|.++.+++.+ ...|+|+|+++.. .. .++.+..+|+.+.
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~---------------~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-- 116 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR---------------GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL-- 116 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC---------------CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC--
Confidence 46889999999999999999875 2589999999831 11 3788889998764
Q ss_pred HHHHHhhcCCCCccEEeeCC
Q 030299 108 AEVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~ 127 (179)
+ .+||+|++-.
T Consensus 117 --------~-~~fD~ii~~~ 127 (219)
T TIGR02021 117 --------C-GEFDIVVCMD 127 (219)
T ss_pred --------C-CCcCEEEEhh
Confidence 2 5799998843
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.15 E-value=7.7e-06 Score=73.42 Aligned_cols=70 Identities=19% Similarity=0.208 Sum_probs=53.1
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
.++.+|||||||+|.++..+++.. ..|+|+|+++.. ...+++++++|+.+...
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~---------------~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~- 359 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQA---------------AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFT- 359 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhC---------------CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhh-
Confidence 578899999999999999998863 589999999831 24579999999976321
Q ss_pred HHHHhhcCCCCccEEeeCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~ 128 (179)
.. .+.+..||+|++|.+
T Consensus 360 -~~--~~~~~~fD~Vi~dPP 376 (443)
T PRK13168 360 -DQ--PWALGGFDKVLLDPP 376 (443)
T ss_pred -hh--hhhcCCCCEEEECcC
Confidence 00 022357999999864
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=8.1e-06 Score=65.15 Aligned_cols=68 Identities=16% Similarity=0.150 Sum_probs=49.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
+++.+|||+|||+|.++..++...+ .++|+|+|+++.. ...+++++.+|+.+.-
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~-------------~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~-- 103 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCP-------------KGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECL-- 103 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCC-------------CCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHH--
Confidence 6788999999999999999987644 5799999999831 2357888899986521
Q ss_pred HHHHhhcCCCCccEEeeCC
Q 030299 109 EVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~ 127 (179)
..+. ..+|.+..++
T Consensus 104 ----~~~~-~~~d~v~~~~ 117 (196)
T PRK07402 104 ----AQLA-PAPDRVCIEG 117 (196)
T ss_pred ----hhCC-CCCCEEEEEC
Confidence 1122 2467777764
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=1e-05 Score=71.95 Aligned_cols=74 Identities=20% Similarity=0.167 Sum_probs=53.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC--CCeeEEeccccchh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI--EGVIQVQGDITNAR 106 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~--~~v~~i~gDi~~~~ 106 (179)
.+|.+|||||||+|+++..++.. + ..+|+++|+++.. .+ .+++++++|+++..
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~-g-------------a~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l 284 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG-G-------------CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLL 284 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC-C-------------CCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHH
Confidence 46889999999999999876643 2 4699999999831 23 36889999998742
Q ss_pred hHHHHHhhcCCCCccEEeeCCCCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGAPDV 131 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~~~~ 131 (179)
+++.. .+++||+|++|.+.-.
T Consensus 285 --~~~~~--~~~~fDlVilDPP~f~ 305 (396)
T PRK15128 285 --RTYRD--RGEKFDVIVMDPPKFV 305 (396)
T ss_pred --HHHHh--cCCCCCEEEECCCCCC
Confidence 11111 2457999999987533
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.5e-05 Score=67.08 Aligned_cols=68 Identities=16% Similarity=0.234 Sum_probs=53.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------C-C--CCCeeEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------A-P--IEGVIQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~-~--~~~v~~i~gDi~~~~~ 107 (179)
.++.+|||||||.|..+.+++...+ ..+|+++|++|. . + .++++++.+|..+.-.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p-------------~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~ 131 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLP-------------DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIA 131 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCC-------------CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHH
Confidence 4568999999999999999998875 589999999983 1 1 2578899999876421
Q ss_pred HHHHHhhcCCCCccEEeeCC
Q 030299 108 AEVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~ 127 (179)
.. ..+||+|++|.
T Consensus 132 ------~~-~~~yD~I~~D~ 144 (262)
T PRK04457 132 ------VH-RHSTDVILVDG 144 (262)
T ss_pred ------hC-CCCCCEEEEeC
Confidence 12 25799999996
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.10 E-value=6.8e-06 Score=75.21 Aligned_cols=66 Identities=15% Similarity=0.217 Sum_probs=51.6
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchhhH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNARTA 108 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~~~ 108 (179)
++.+|||+|||+|..+..++.+.+ ..+|+|+|+++.. .+ .++.++++|+.+.
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p-------------~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~--- 201 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELP-------------NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN--- 201 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCC-------------CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh---
Confidence 356899999999999999988875 5799999999831 12 3578889998652
Q ss_pred HHHHhhcCCCCccEEeeCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~ 128 (179)
+++.+||+|+|+.+
T Consensus 202 ------~~~~~fDlIvsNPP 215 (506)
T PRK01544 202 ------IEKQKFDFIVSNPP 215 (506)
T ss_pred ------CcCCCccEEEECCC
Confidence 23457999999864
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.5e-05 Score=64.79 Aligned_cols=112 Identities=14% Similarity=0.063 Sum_probs=70.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------------CCCCeeEEecccc
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------------PIEGVIQVQGDIT 103 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------------~~~~v~~i~gDi~ 103 (179)
.++.+||+||||.|+.+..+++..+ ..+|++||+++.. ..++++++.+|..
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~-------------~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~ 141 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPS-------------VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGI 141 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCC-------------CCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchH
Confidence 3567999999999999999987532 4689999999830 1357888899987
Q ss_pred chhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHHH---H------------HHHHHHHHHHHhhce
Q 030299 104 NARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSIQ---F------------FIYELVFCLRQLLQY 168 (179)
Q Consensus 104 ~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~~---~------------~~~~~~~~~~~~f~~ 168 (179)
..- .. .+++||+|++|...+..-....-...-.+.+...|+- + .+..++--|++.|..
T Consensus 142 ~~l------~~-~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F~~ 214 (283)
T PRK00811 142 KFV------AE-TENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFPI 214 (283)
T ss_pred HHH------hh-CCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHCCC
Confidence 632 11 3468999999986443211111011112334444431 0 123444567888988
Q ss_pred EEE
Q 030299 169 VIL 171 (179)
Q Consensus 169 v~~ 171 (179)
|..
T Consensus 215 v~~ 217 (283)
T PRK00811 215 VRP 217 (283)
T ss_pred EEE
Confidence 876
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.09 E-value=3.1e-05 Score=66.45 Aligned_cols=106 Identities=19% Similarity=0.232 Sum_probs=73.7
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~~~ 110 (179)
+.+|||||||.|-....++++.| ...|+-+|++.+. .++|.++...|+.+.-
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p-------------~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v---- 221 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSP-------------QAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPV---- 221 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCC-------------CCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccc----
Confidence 44999999999999999999875 6899999999863 1345556788888752
Q ss_pred HHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHHHH-------HH-H---HHHHHHHHhhceEEEe
Q 030299 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSIQF-------FI-Y---ELVFCLRQLLQYVILD 172 (179)
Q Consensus 111 l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~~~-------~~-~---~~~~~~~~~f~~v~~~ 172 (179)
.+ +||.|+|+.++. .|.. ..+..--++...|-.+. ++ + .---.|.++|..|++.
T Consensus 222 -----~~-kfd~IisNPPfh-~G~~-v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg~v~~l 286 (300)
T COG2813 222 -----EG-KFDLIISNPPFH-AGKA-VVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFGNVEVL 286 (300)
T ss_pred -----cc-cccEEEeCCCcc-CCcc-hhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcCCEEEE
Confidence 33 899999997764 3332 23333445666665543 11 1 1224689999998854
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.3e-05 Score=70.05 Aligned_cols=66 Identities=15% Similarity=0.129 Sum_probs=48.9
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~~l 111 (179)
..+|||||||+|.++..++++.+ ..+|+++|++++. .-...+++.+|+.+.
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p-------------~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~------ 257 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSP-------------KIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD------ 257 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCC-------------CCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc------
Confidence 45899999999999999998865 4689999999842 011235667776542
Q ss_pred HhhcCCCCccEEeeCCCCC
Q 030299 112 IRHFDGCKADLVVCDGAPD 130 (179)
Q Consensus 112 ~~~~~~~~~D~VlsD~~~~ 130 (179)
. .++||+|+++.++.
T Consensus 258 ---~-~~~fDlIvsNPPFH 272 (342)
T PRK09489 258 ---I-KGRFDMIISNPPFH 272 (342)
T ss_pred ---c-CCCccEEEECCCcc
Confidence 1 35799999997653
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=8.6e-06 Score=69.76 Aligned_cols=70 Identities=17% Similarity=0.345 Sum_probs=56.1
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------C--C-CCCeeEEeccccchh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------A--P-IEGVIQVQGDITNAR 106 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~--~-~~~v~~i~gDi~~~~ 106 (179)
+.++++|||||||+|.+|..++++. .+|+|+|+++. . . ..+++++++|+.+.+
T Consensus 34 ~~~~~~VLEIG~G~G~LT~~Ll~~~---------------~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~ 98 (294)
T PTZ00338 34 IKPTDTVLEIGPGTGNLTEKLLQLA---------------KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE 98 (294)
T ss_pred CCCcCEEEEecCchHHHHHHHHHhC---------------CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc
Confidence 3678999999999999999998863 57999999982 1 1 357999999998753
Q ss_pred hHHHHHhhcCCCCccEEeeCCCCCCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGAPDVTG 133 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~~~~~g 133 (179)
+ ..+|.|+++.+.+.+.
T Consensus 99 --------~--~~~d~VvaNlPY~Ist 115 (294)
T PTZ00338 99 --------F--PYFDVCVANVPYQISS 115 (294)
T ss_pred --------c--cccCEEEecCCcccCc
Confidence 1 3689999998876654
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.2e-05 Score=62.68 Aligned_cols=66 Identities=23% Similarity=0.379 Sum_probs=51.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCC--eeEEeccccchh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEG--VIQVQGDITNAR 106 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~--v~~i~gDi~~~~ 106 (179)
.++.+|||+|||+|.++..++.+ + ..|+|+|+++.. ...+ +.++++|+.+.
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~-~--------------~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~- 85 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN-G--------------KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP- 85 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh-c--------------ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-
Confidence 67889999999999999999887 3 689999999831 1222 88889998663
Q ss_pred hHHHHHhhcCCCCccEEeeCCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
+.+..||+|+++.+.
T Consensus 86 --------~~~~~~d~vi~n~p~ 100 (188)
T PRK14968 86 --------FRGDKFDVILFNPPY 100 (188)
T ss_pred --------ccccCceEEEECCCc
Confidence 233479999997653
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=98.08 E-value=6.7e-06 Score=74.00 Aligned_cols=68 Identities=21% Similarity=0.267 Sum_probs=52.7
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CCCCeeEEeccccchhhHHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~~~~v~~i~gDi~~~~~~~~ 110 (179)
.++.+|||||||+|.++..++++. .+|+|+|+++.. ..+++.++++|+.+...
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~---------------~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~--- 97 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKA---------------GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDL--- 97 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhC---------------CEEEEEeCCHHHHHHHHHHhccCCceEEEEeccccccc---
Confidence 356799999999999999999863 589999999831 13578899999975321
Q ss_pred HHhhcCCCCccEEeeCCC
Q 030299 111 VIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 111 l~~~~~~~~~D~VlsD~~ 128 (179)
.+++.+||+|++..+
T Consensus 98 ---~~~~~~fD~I~~~~~ 112 (475)
T PLN02336 98 ---NISDGSVDLIFSNWL 112 (475)
T ss_pred ---CCCCCCEEEEehhhh
Confidence 145568999999764
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.1e-05 Score=65.21 Aligned_cols=63 Identities=21% Similarity=0.101 Sum_probs=47.1
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------C-CCCeeEEeccccchhhHHH
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~-~~~v~~i~gDi~~~~~~~~ 110 (179)
++|||+|||+|+++..+++..+ ...|+|+|+++.. . ..+++++.+|+.+.+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~-------------~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~---- 63 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP-------------HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDP---- 63 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCC----
Confidence 3799999999999999998864 4789999999831 1 135788889986542
Q ss_pred HHhhcCCCCccEEeeCC
Q 030299 111 VIRHFDGCKADLVVCDG 127 (179)
Q Consensus 111 l~~~~~~~~~D~VlsD~ 127 (179)
++ .+||+|++..
T Consensus 64 ----~~-~~fD~I~~~~ 75 (224)
T smart00828 64 ----FP-DTYDLVFGFE 75 (224)
T ss_pred ----CC-CCCCEeehHH
Confidence 12 3688887643
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.1e-05 Score=71.71 Aligned_cols=69 Identities=7% Similarity=0.082 Sum_probs=55.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~~~v~~i~gDi~~~~~~ 108 (179)
+.+..+||||||+|.++..++.+.+ ...++|+|+++- ..+.|+.++++|+....
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P-------------~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll-- 185 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNP-------------NKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLL-- 185 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCC-------------CCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhh--
Confidence 3467899999999999999999975 589999999972 13679999999987532
Q ss_pred HHHHhhcCCCCccEEeeCC
Q 030299 109 EVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~ 127 (179)
..++++.+|.|++.-
T Consensus 186 ----~~~~~~s~D~I~lnF 200 (390)
T PRK14121 186 ----ELLPSNSVEKIFVHF 200 (390)
T ss_pred ----hhCCCCceeEEEEeC
Confidence 235677899999865
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.5e-05 Score=64.60 Aligned_cols=69 Identities=12% Similarity=0.060 Sum_probs=51.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
.++.+|||||||+|.++..++.+. ..+|+++|+++.. ...+++++.+|+.+..
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~--------------a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l-- 115 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRY--------------AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFL-- 115 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcC--------------CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHH--
Confidence 457899999999999998765553 3689999999831 2457889999986532
Q ss_pred HHHHhhcCCCCccEEeeCCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~ 129 (179)
.. ....||+|++|.+.
T Consensus 116 ----~~-~~~~fDlV~~DPPy 131 (199)
T PRK10909 116 ----AQ-PGTPHNVVFVDPPF 131 (199)
T ss_pred ----hh-cCCCceEEEECCCC
Confidence 11 13469999999764
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=98.04 E-value=9e-06 Score=70.31 Aligned_cols=61 Identities=20% Similarity=0.122 Sum_probs=45.8
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------C--------CCCeeEEeccccc
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P--------IEGVIQVQGDITN 104 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------~--------~~~v~~i~gDi~~ 104 (179)
++.+|||||||+|.++..++++ ...|+|+|+++.. . ..++.+..+|+.+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~---------------g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~ 208 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE---------------GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES 208 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC---------------CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh
Confidence 5789999999999999999875 2689999999821 1 1245677777644
Q ss_pred hhhHHHHHhhcCCCCccEEeeCC
Q 030299 105 ARTAEVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 105 ~~~~~~l~~~~~~~~~D~VlsD~ 127 (179)
. ++.||+|++-.
T Consensus 209 l-----------~~~fD~Vv~~~ 220 (315)
T PLN02585 209 L-----------SGKYDTVTCLD 220 (315)
T ss_pred c-----------CCCcCEEEEcC
Confidence 2 25799998754
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.3e-05 Score=64.83 Aligned_cols=63 Identities=27% Similarity=0.291 Sum_probs=47.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~~ 107 (179)
.++.+|||+|||+|.++..+++.. ..|+|+|+++.. .. .++.+.++|+..
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~---------------~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--- 123 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG---------------AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES--- 123 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC---------------CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---
Confidence 467899999999999999998752 569999999831 12 367888888432
Q ss_pred HHHHHhhcCCCCccEEeeCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~ 128 (179)
....||+|++...
T Consensus 124 --------~~~~fD~v~~~~~ 136 (230)
T PRK07580 124 --------LLGRFDTVVCLDV 136 (230)
T ss_pred --------ccCCcCEEEEcch
Confidence 1357999998654
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.2e-05 Score=65.84 Aligned_cols=67 Identities=18% Similarity=0.069 Sum_probs=50.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------C---------------CCCee
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P---------------IEGVI 96 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------~---------------~~~v~ 96 (179)
.++.+|||+|||.|-.+.+++++ +..|+|+|+|+.. . ..+|+
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~---------------G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 97 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ---------------GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIE 97 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC---------------CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceE
Confidence 57789999999999999999986 3689999999841 1 13578
Q ss_pred EEeccccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 97 QVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 97 ~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
++++|+++.+.. ...+||.|+-.+.
T Consensus 98 ~~~~D~~~~~~~-------~~~~fD~i~D~~~ 122 (213)
T TIGR03840 98 IFCGDFFALTAA-------DLGPVDAVYDRAA 122 (213)
T ss_pred EEEccCCCCCcc-------cCCCcCEEEechh
Confidence 889999886420 1246888876543
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.02 E-value=8.4e-06 Score=69.33 Aligned_cols=62 Identities=27% Similarity=0.394 Sum_probs=49.9
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhHHHHH
Q 030299 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEVVI 112 (179)
Q Consensus 44 ~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~~~l~ 112 (179)
+|||||||+|-.+..++.+.+ ...|+|+|++|-. .+.++.++++|.++.-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~-------------~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~------ 173 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGP-------------DAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPL------ 173 (280)
T ss_pred cEEEecCChHHHHHHHHhhCc-------------CCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccccc------
Confidence 799999999999999999876 5799999999931 1244667777887752
Q ss_pred hhcCCCCccEEeeCCC
Q 030299 113 RHFDGCKADLVVCDGA 128 (179)
Q Consensus 113 ~~~~~~~~D~VlsD~~ 128 (179)
. ++||+|+|+.+
T Consensus 174 ---~-~~fDlIVsNPP 185 (280)
T COG2890 174 ---R-GKFDLIVSNPP 185 (280)
T ss_pred ---C-CceeEEEeCCC
Confidence 3 38999999975
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.6e-05 Score=66.64 Aligned_cols=73 Identities=21% Similarity=0.197 Sum_probs=51.5
Q ss_pred CcchhhhcHHhH--HHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC-C-----C--
Q 030299 21 WRARSAFKLLQI--DEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP-M-----A-- 90 (179)
Q Consensus 21 ~~sRaa~KL~ei--d~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~-~-----~-- 90 (179)
|+.|....+++- .+....+.++.+|||||||+|.+|..+++.... ...|+|+|+|+ | +
T Consensus 41 y~tr~E~~il~~~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~------------~~~~~~iDiS~~mL~~a~~~l 108 (301)
T TIGR03438 41 YPTRTEAAILERHADEIAAATGAGCELVELGSGSSRKTRLLLDALRQ------------PARYVPIDISADALKESAAAL 108 (301)
T ss_pred ccHHHHHHHHHHHHHHHHHhhCCCCeEEecCCCcchhHHHHHHhhcc------------CCeEEEEECCHHHHHHHHHHH
Confidence 455665555432 122234567889999999999999999998741 36899999998 2 1
Q ss_pred --CCCC--eeEEeccccch
Q 030299 91 --PIEG--VIQVQGDITNA 105 (179)
Q Consensus 91 --~~~~--v~~i~gDi~~~ 105 (179)
..++ +..+++|+++.
T Consensus 109 ~~~~p~~~v~~i~gD~~~~ 127 (301)
T TIGR03438 109 AADYPQLEVHGICADFTQP 127 (301)
T ss_pred HhhCCCceEEEEEEcccch
Confidence 1244 56789999874
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.01 E-value=5.5e-06 Score=58.57 Aligned_cols=64 Identities=17% Similarity=0.167 Sum_probs=35.9
Q ss_pred EEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------C-----CCCeeEEeccccchhhHHHHHhh
Q 030299 46 VDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P-----IEGVIQVQGDITNARTAEVVIRH 114 (179)
Q Consensus 46 lDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~-----~~~v~~i~gDi~~~~~~~~l~~~ 114 (179)
||+|||+|.++..+++..+ ..+++|+|+++.. . ..+...++.+..+... .
T Consensus 1 LdiGcG~G~~~~~l~~~~~-------------~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~------~ 61 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELP-------------DARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFD------Y 61 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--------------EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---------C
T ss_pred CEeCccChHHHHHHHHhCC-------------CCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhh------c
Confidence 7999999999999999875 5899999999932 1 1233344444333211 1
Q ss_pred cCCCCccEEeeCCC
Q 030299 115 FDGCKADLVVCDGA 128 (179)
Q Consensus 115 ~~~~~~D~VlsD~~ 128 (179)
...++||+|++...
T Consensus 62 ~~~~~fD~V~~~~v 75 (99)
T PF08242_consen 62 DPPESFDLVVASNV 75 (99)
T ss_dssp CC----SEEEEE-T
T ss_pred ccccccceehhhhh
Confidence 12258999998754
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=98.01 E-value=8.2e-06 Score=66.22 Aligned_cols=61 Identities=21% Similarity=0.353 Sum_probs=45.0
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CCCCCeeEEeccccchhhHHHHHh
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~~~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
.+++|+|||.|-+|..|+.+. ..++++|+++. ...++|+++++|+.+..
T Consensus 45 ~~alEvGCs~G~lT~~LA~rC---------------d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~------- 102 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRC---------------DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFW------- 102 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGE---------------EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---------
T ss_pred ceeEecCCCccHHHHHHHHhh---------------CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCC-------
Confidence 579999999999999999986 48999999983 34689999999998753
Q ss_pred hcCCCCccEEeeCC
Q 030299 114 HFDGCKADLVVCDG 127 (179)
Q Consensus 114 ~~~~~~~D~VlsD~ 127 (179)
++++||+|+..-
T Consensus 103 --P~~~FDLIV~SE 114 (201)
T PF05401_consen 103 --PEGRFDLIVLSE 114 (201)
T ss_dssp ---SS-EEEEEEES
T ss_pred --CCCCeeEEEEeh
Confidence 567999998753
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.9e-05 Score=65.67 Aligned_cols=65 Identities=17% Similarity=0.187 Sum_probs=51.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CCCCeeEEeccccchhhHHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~~~~v~~i~gDi~~~~~~~~ 110 (179)
.++++|||+|||+|.+|..++++. ..|+++|+++.. ..++++++.+|+.+.+..
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~---------------~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~-- 90 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRA---------------KKVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP-- 90 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhC---------------CcEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh--
Confidence 568899999999999999999874 359999999831 136788999999886521
Q ss_pred HHhhcCCCCc---cEEeeCCCC
Q 030299 111 VIRHFDGCKA---DLVVCDGAP 129 (179)
Q Consensus 111 l~~~~~~~~~---D~VlsD~~~ 129 (179)
.+ ++|+++.+.
T Consensus 91 --------~~d~~~~vvsNlPy 104 (253)
T TIGR00755 91 --------DFPKQLKVVSNLPY 104 (253)
T ss_pred --------HcCCcceEEEcCCh
Confidence 23 489998764
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.9e-05 Score=66.64 Aligned_cols=67 Identities=12% Similarity=0.130 Sum_probs=50.1
Q ss_pred CCCEEEEEccCCChHHHHHHH-HhCCCCCCCCCCCCCCCCeEEEEeCCCCC------------CC-CCeeEEeccccchh
Q 030299 41 GVKRVVDLCAAPGSWSQVLSR-KLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PI-EGVIQVQGDITNAR 106 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~-~~~~~~~~~~~~~~~~~~~VvavD~~~~~------------~~-~~v~~i~gDi~~~~ 106 (179)
++++|+|||||||+.|..+.. +..+ +++++++|+++.. .+ ++++|.++|+.+..
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p------------~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~ 190 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLP------------TTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVT 190 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCC------------CCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcc
Confidence 678999999999998776544 3332 6899999999831 12 46999999998742
Q ss_pred hHHHHHhhcCCCCccEEeeCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~ 127 (179)
. ...+||+|+++.
T Consensus 191 ~--------~l~~FDlVF~~A 203 (296)
T PLN03075 191 E--------SLKEYDVVFLAA 203 (296)
T ss_pred c--------ccCCcCEEEEec
Confidence 1 125799999983
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=4.2e-05 Score=72.53 Aligned_cols=72 Identities=15% Similarity=0.025 Sum_probs=54.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC--CCeeEEeccccchh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI--EGVIQVQGDITNAR 106 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~--~~v~~i~gDi~~~~ 106 (179)
.+|.+|||||||+|+++.+++.. + ...|+++|+++.. .+ .+++++++|+++..
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~-G-------------a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l 602 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALG-G-------------AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWL 602 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHC-C-------------CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHH
Confidence 45889999999999999999875 3 3579999999831 12 36889999998742
Q ss_pred hHHHHHhhcCCCCccEEeeCCCCCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGAPDVT 132 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~~~~~ 132 (179)
. .+ +++||+|++|.+.-..
T Consensus 603 ~------~~-~~~fDlIilDPP~f~~ 621 (702)
T PRK11783 603 K------EA-REQFDLIFIDPPTFSN 621 (702)
T ss_pred H------Hc-CCCcCEEEECCCCCCC
Confidence 1 12 3589999999654433
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=97.95 E-value=2e-05 Score=66.91 Aligned_cols=66 Identities=21% Similarity=0.154 Sum_probs=45.5
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCC-CeeEEeccccchh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNAR 106 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~-~v~~i~gDi~~~~ 106 (179)
..++.+|||+|||+|..+..++.. + ..+|+|+|+++.. .+. .+.+..+|...
T Consensus 157 ~~~g~~VLDvGcGsG~lai~aa~~-g-------------~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~-- 220 (288)
T TIGR00406 157 DLKDKNVIDVGCGSGILSIAALKL-G-------------AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ-- 220 (288)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHc-C-------------CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc--
Confidence 357899999999999999887754 3 3689999999842 111 23344444221
Q ss_pred hHHHHHhhcCCCCccEEeeCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
..+.+||+|+++..
T Consensus 221 --------~~~~~fDlVvan~~ 234 (288)
T TIGR00406 221 --------PIEGKADVIVANIL 234 (288)
T ss_pred --------ccCCCceEEEEecC
Confidence 22458999999864
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.2e-05 Score=53.29 Aligned_cols=65 Identities=22% Similarity=0.298 Sum_probs=50.1
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhHHHHH
Q 030299 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEVVI 112 (179)
Q Consensus 44 ~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~~~l~ 112 (179)
+++|+|||+|..+..+++ .+ ...++++|+++.. ....+.++.+|+.+...
T Consensus 1 ~ildig~G~G~~~~~~~~-~~-------------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 61 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GP-------------GARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP----- 61 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CC-------------CCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc-----
Confidence 489999999999999987 22 5799999999731 23467888999988652
Q ss_pred hhcCCCCccEEeeCCCC
Q 030299 113 RHFDGCKADLVVCDGAP 129 (179)
Q Consensus 113 ~~~~~~~~D~VlsD~~~ 129 (179)
....++|+|+++...
T Consensus 62 --~~~~~~d~i~~~~~~ 76 (107)
T cd02440 62 --EADESFDVIISDPPL 76 (107)
T ss_pred --ccCCceEEEEEccce
Confidence 124579999998864
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=97.93 E-value=3.5e-05 Score=68.81 Aligned_cols=70 Identities=21% Similarity=0.344 Sum_probs=53.1
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
.++.+|||+|||+|.++..++... .+|+|+|+++.. .+.+++++++|+.+..
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~~---------------~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l-- 353 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQA---------------KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVL-- 353 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHhC---------------CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHH--
Confidence 567899999999999999998763 589999999831 2568999999997631
Q ss_pred HHHHhhcCCCCccEEeeCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~ 128 (179)
..+. +.+..||+|+.|.+
T Consensus 354 ~~~~--~~~~~~D~vi~dPP 371 (431)
T TIGR00479 354 PKQP--WAGQIPDVLLLDPP 371 (431)
T ss_pred HHHH--hcCCCCCEEEECcC
Confidence 1111 22346999999875
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.92 E-value=4.2e-05 Score=61.51 Aligned_cols=68 Identities=21% Similarity=0.210 Sum_probs=53.9
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART 107 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~ 107 (179)
++||++++|+|||+|+.+..++ +.++ .++|+|+|-.+.. ..+|++.+.||.-+.
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a-~~~p------------~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~-- 96 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWA-LAGP------------SGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEA-- 96 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHH-HhCC------------CceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHh--
Confidence 3789999999999999999998 5543 7999999988731 368999999997664
Q ss_pred HHHHHhhcCCC-CccEEeeCCC
Q 030299 108 AEVVIRHFDGC-KADLVVCDGA 128 (179)
Q Consensus 108 ~~~l~~~~~~~-~~D~VlsD~~ 128 (179)
+++. .+|.|+.-|+
T Consensus 97 -------L~~~~~~daiFIGGg 111 (187)
T COG2242 97 -------LPDLPSPDAIFIGGG 111 (187)
T ss_pred -------hcCCCCCCEEEECCC
Confidence 2222 6999998764
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.5e-05 Score=69.41 Aligned_cols=65 Identities=18% Similarity=0.293 Sum_probs=53.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCC-eeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEG-VIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~-v~~i~gDi~~~~~~ 108 (179)
-++..|||+|||+|..|...++.. ..+|+|||-+.+. ...+ +++++|.+.+.+
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAG--------------A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~-- 122 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAG--------------ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIE-- 122 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhC--------------cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEe--
Confidence 468899999999999999999874 3699999999973 1334 778899999985
Q ss_pred HHHHhhcCCCCccEEeeC
Q 030299 109 EVVIRHFDGCKADLVVCD 126 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD 126 (179)
+|.+++|+|+|.
T Consensus 123 ------LP~eKVDiIvSE 134 (346)
T KOG1499|consen 123 ------LPVEKVDIIVSE 134 (346)
T ss_pred ------cCccceeEEeeh
Confidence 466799999985
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.3e-05 Score=68.83 Aligned_cols=37 Identities=27% Similarity=0.390 Sum_probs=31.2
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~ 89 (179)
..+|++|||+|||+|..+..++.. + ..+|+|+|+.|.
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~kl-G-------------A~~v~a~DiDp~ 195 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKL-G-------------AKKVVAIDIDPL 195 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHT-T-------------BSEEEEEESSCH
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHc-C-------------CCeEEEecCCHH
Confidence 478899999999999999988775 4 368999999995
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.87 E-value=4.4e-05 Score=62.45 Aligned_cols=68 Identities=21% Similarity=0.266 Sum_probs=56.0
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCeeEEeccccchhh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNART 107 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~~~v~~i~gDi~~~~~ 107 (179)
+++|++|||||||.|.-+-++++.. ++|+++|..+. ..++||.+++||-..-..
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvla~l~---------------~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~ 134 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVLARLV---------------GRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWP 134 (209)
T ss_pred CCCCCeEEEECCCchHHHHHHHHHh---------------CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCC
Confidence 3789999999999999999999986 58999999873 136789999999987432
Q ss_pred HHHHHhhcCCCCccEEeeCCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
+..+||.|+..++.
T Consensus 135 --------~~aPyD~I~Vtaaa 148 (209)
T COG2518 135 --------EEAPYDRIIVTAAA 148 (209)
T ss_pred --------CCCCcCEEEEeecc
Confidence 24789999998764
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.87 E-value=5.6e-06 Score=71.11 Aligned_cols=37 Identities=19% Similarity=0.308 Sum_probs=32.2
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~ 89 (179)
+++|++|||+|||+|..+..+++. + ..+|+|+|+.|.
T Consensus 160 ~~~g~~vlDvGcGSGILaIAa~kL-G-------------A~~v~g~DiDp~ 196 (300)
T COG2264 160 LKKGKTVLDVGCGSGILAIAAAKL-G-------------AKKVVGVDIDPQ 196 (300)
T ss_pred hcCCCEEEEecCChhHHHHHHHHc-C-------------CceEEEecCCHH
Confidence 469999999999999999888775 4 378999999996
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=3.9e-05 Score=58.74 Aligned_cols=67 Identities=18% Similarity=0.093 Sum_probs=50.4
Q ss_pred CCCCEEEEEccCCCh-HHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCeeEEeccccchhhHHHHHhh
Q 030299 40 EGVKRVVDLCAAPGS-WSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRH 114 (179)
Q Consensus 40 ~~g~~VlDLgagpGg-~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----~~~~v~~i~gDi~~~~~~~~l~~~ 114 (179)
.++.+|+|+|||.|. .+..|++. +..|+|+|++|.. ...++.++.+|+++++..
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~---------------G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~------ 73 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKES---------------GFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLE------ 73 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHC---------------CCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHH------
Confidence 356899999999996 88888754 3799999999953 124788999999997631
Q ss_pred cCCCCccEEeeCCC
Q 030299 115 FDGCKADLVVCDGA 128 (179)
Q Consensus 115 ~~~~~~D~VlsD~~ 128 (179)
+ -+.+|+|.|-=+
T Consensus 74 ~-y~~a~liysirp 86 (134)
T PRK04148 74 I-YKNAKLIYSIRP 86 (134)
T ss_pred H-HhcCCEEEEeCC
Confidence 1 246899988543
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=97.82 E-value=5.2e-05 Score=66.79 Aligned_cols=66 Identities=15% Similarity=0.162 Sum_probs=50.5
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~~ 109 (179)
++.+||||+||.|.++..++.+ ...|+|+|+++.. .+.+++++.+|+.+...
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~---------------~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~-- 295 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP---------------DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFAT-- 295 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc---------------CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHH--
Confidence 4679999999999999999864 3589999999831 24578999999976431
Q ss_pred HHHhhcCCCCccEEeeCCC
Q 030299 110 VVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~ 128 (179)
.. ..+||+|+.|.+
T Consensus 296 ----~~-~~~~D~vi~DPP 309 (374)
T TIGR02085 296 ----AQ-MSAPELVLVNPP 309 (374)
T ss_pred ----hc-CCCCCEEEECCC
Confidence 11 135999999944
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.82 E-value=1.7e-05 Score=66.86 Aligned_cols=60 Identities=25% Similarity=0.322 Sum_probs=44.9
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCC-C-----CeeEEeccccc
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------API-E-----GVIQVQGDITN 104 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~-~-----~v~~i~gDi~~ 104 (179)
|++|||+|||.|-.|+.|++. +..|+|+|+++. .|. . .+++...|+.+
T Consensus 90 g~~ilDvGCGgGLLSepLArl---------------ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~ 154 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL---------------GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEG 154 (282)
T ss_pred CceEEEeccCccccchhhHhh---------------CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhh
Confidence 488999999999999999886 368999999983 121 1 25556666665
Q ss_pred hhhHHHHHhhcCCCCccEEeeCC
Q 030299 105 ARTAEVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 105 ~~~~~~l~~~~~~~~~D~VlsD~ 127 (179)
.. +.||.|+|..
T Consensus 155 ~~-----------~~fDaVvcse 166 (282)
T KOG1270|consen 155 LT-----------GKFDAVVCSE 166 (282)
T ss_pred cc-----------cccceeeeHH
Confidence 32 4699999854
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.79 E-value=9.9e-05 Score=61.04 Aligned_cols=75 Identities=17% Similarity=0.122 Sum_probs=56.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~~ 107 (179)
.++.+|||+|||+|.-+.+++..++. .++|+++|+++.. .+ ..++++.||+.+.
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~------------~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~-- 132 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPE------------DGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSA-- 132 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCC------------CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH--
Confidence 46789999999999999999887763 6899999999831 22 3588899998763
Q ss_pred HHHHHhhcCCCCccEEeeCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~ 128 (179)
..++....+.++||+|+.|+.
T Consensus 133 L~~l~~~~~~~~fD~VfiDa~ 153 (234)
T PLN02781 133 LDQLLNNDPKPEFDFAFVDAD 153 (234)
T ss_pred HHHHHhCCCCCCCCEEEECCC
Confidence 233332222458999999975
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.77 E-value=3.3e-05 Score=60.28 Aligned_cols=105 Identities=23% Similarity=0.228 Sum_probs=68.3
Q ss_pred hCCcchh--hhcHH-hHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----
Q 030299 19 EGWRARS--AFKLL-QIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----- 90 (179)
Q Consensus 19 ~~~~sRa--a~KL~-eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----- 90 (179)
+.|..|+ |-.+. .|+..++- -.|.+++|||||.|-.+...+ ++. ...|+|+|+.|.+
T Consensus 24 EQY~T~p~iAasM~~~Ih~Tygd-iEgkkl~DLgcgcGmLs~a~s--m~~------------~e~vlGfDIdpeALEIf~ 88 (185)
T KOG3420|consen 24 EQYPTRPHIAASMLYTIHNTYGD-IEGKKLKDLGCGCGMLSIAFS--MPK------------NESVLGFDIDPEALEIFT 88 (185)
T ss_pred hhCCCcHHHHHHHHHHHHhhhcc-ccCcchhhhcCchhhhHHHhh--cCC------------CceEEeeecCHHHHHHHh
Confidence 3455554 33333 34455542 257899999999999883332 332 4789999999942
Q ss_pred -C---C-CCeeEEeccccchhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHH
Q 030299 91 -P---I-EGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLI 146 (179)
Q Consensus 91 -~---~-~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~ 146 (179)
. . -++.++|+||.+++ +....||.++-|.++-+......-++.|..|-
T Consensus 89 rNaeEfEvqidlLqcdildle--------~~~g~fDtaviNppFGTk~~~aDm~fv~~al~ 141 (185)
T KOG3420|consen 89 RNAEEFEVQIDLLQCDILDLE--------LKGGIFDTAVINPPFGTKKKGADMEFVSAALK 141 (185)
T ss_pred hchHHhhhhhheeeeeccchh--------ccCCeEeeEEecCCCCcccccccHHHHHHHHH
Confidence 1 1 15678999999987 34578999999987765554433355554443
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00014 Score=62.69 Aligned_cols=72 Identities=17% Similarity=0.156 Sum_probs=53.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC------C--C-------CCCeeEEeccccc
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------A--P-------IEGVIQVQGDITN 104 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~------~--~-------~~~v~~i~gDi~~ 104 (179)
.+..+||+||+|.|+....+++. +. ..+|+.||+.+. + + -++++++.+|...
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~------------v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~ 156 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SS------------VEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVE 156 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CC------------CCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHH
Confidence 55789999999999999999865 31 468999999983 0 1 2578899999766
Q ss_pred hhhHHHHHhhcCCCCccEEeeCCCCC
Q 030299 105 ARTAEVVIRHFDGCKADLVVCDGAPD 130 (179)
Q Consensus 105 ~~~~~~l~~~~~~~~~D~VlsD~~~~ 130 (179)
.- +..++++||+|++|...+
T Consensus 157 ~l------~~~~~~~yDvIi~D~~dp 176 (308)
T PLN02366 157 FL------KNAPEGTYDAIIVDSSDP 176 (308)
T ss_pred HH------hhccCCCCCEEEEcCCCC
Confidence 31 112346799999998643
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.75 E-value=8.8e-05 Score=62.27 Aligned_cols=69 Identities=17% Similarity=0.178 Sum_probs=57.2
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCC-eeEEeccccchh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEG-VIQVQGDITNAR 106 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~-v~~i~gDi~~~~ 106 (179)
++||++|+|.|.|.|..|.+|++.+++ .++|+.+|+.+.. .+.+ |.+..+|+.+..
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~------------~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~ 159 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGP------------EGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI 159 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCC------------CceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc
Confidence 489999999999999999999998875 6999999999831 2333 888889999864
Q ss_pred hHHHHHhhcCCCCccEEeeCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
.+..||.|+.|+.
T Consensus 160 ---------~~~~vDav~LDmp 172 (256)
T COG2519 160 ---------DEEDVDAVFLDLP 172 (256)
T ss_pred ---------cccccCEEEEcCC
Confidence 2348999999994
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=5.8e-05 Score=60.97 Aligned_cols=71 Identities=25% Similarity=0.307 Sum_probs=53.9
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCC-eeEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEG-VIQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~-v~~i~gDi~~~~~ 107 (179)
+...+|||||||.|.+..-|++.-= .+..+|+|.++.+ ..+| ++|.|.||+++.
T Consensus 66 ~~A~~VlDLGtGNG~~L~~L~~egf-------------~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~- 131 (227)
T KOG1271|consen 66 KQADRVLDLGTGNGHLLFQLAKEGF-------------QSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPD- 131 (227)
T ss_pred ccccceeeccCCchHHHHHHHHhcC-------------CCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCc-
Confidence 3345999999999999998887632 3569999999841 2345 889999999974
Q ss_pred HHHHHhhcCCCCccEEeeCCCCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGAPDV 131 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~~~~ 131 (179)
+...+||+|+--|..++
T Consensus 132 -------~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271|consen 132 -------FLSGQFDLVLDKGTLDA 148 (227)
T ss_pred -------ccccceeEEeecCceee
Confidence 34568999987765444
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=97.72 E-value=8e-05 Score=62.66 Aligned_cols=71 Identities=20% Similarity=0.164 Sum_probs=49.0
Q ss_pred CCCEEEEEccCCCh----HHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC------CCC------------------
Q 030299 41 GVKRVVDLCAAPGS----WSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------API------------------ 92 (179)
Q Consensus 41 ~g~~VlDLgagpGg----~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~------~~~------------------ 92 (179)
++.+|+|+|||+|. ++..+++..+. ......+|+|+|+++. +..
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~--------~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf 170 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPK--------AREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYF 170 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhh--------cCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhE
Confidence 45699999999996 56666665431 0011468999999983 111
Q ss_pred --------------CCeeEEeccccchhhHHHHHhhcCCCCccEEeeCC
Q 030299 93 --------------EGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 93 --------------~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~ 127 (179)
.+|.|.++|+.+.+ .+.++||+|+|..
T Consensus 171 ~~~~~~~~v~~~ir~~V~F~~~dl~~~~--------~~~~~fD~I~crn 211 (264)
T smart00138 171 SRVEDKYRVKPELKERVRFAKHNLLAES--------PPLGDFDLIFCRN 211 (264)
T ss_pred EeCCCeEEEChHHhCcCEEeeccCCCCC--------CccCCCCEEEech
Confidence 25788899998864 2356899999853
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=97.71 E-value=7.4e-05 Score=63.63 Aligned_cols=65 Identities=18% Similarity=0.276 Sum_probs=48.9
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CC-CCeeEEeccccchhh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PI-EGVIQVQGDITNART 107 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~-~~v~~i~gDi~~~~~ 107 (179)
++++.+|||+|||+|.++..++++.+ ..+++++|+.++. .. .+++++.+|+++..
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~p-------------~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~- 212 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHFP-------------ELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKES- 212 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHCC-------------CCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCC-
Confidence 36788999999999999999999976 5789999974431 12 35889999998642
Q ss_pred HHHHHhhcCCCCccEEeeC
Q 030299 108 AEVVIRHFDGCKADLVVCD 126 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD 126 (179)
++ .+|+|+..
T Consensus 213 -------~~--~~D~v~~~ 222 (306)
T TIGR02716 213 -------YP--EADAVLFC 222 (306)
T ss_pred -------CC--CCCEEEeE
Confidence 22 35887654
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=97.70 E-value=3.4e-05 Score=60.90 Aligned_cols=64 Identities=20% Similarity=0.306 Sum_probs=42.8
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------C----CCCeeEEeccccchhhHHH
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P----IEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------~----~~~v~~i~gDi~~~~~~~~ 110 (179)
+.|+|++||-||-+..++... .+|+|+|+.|.. . ..++.++.||+.+...
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~---------------~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~--- 62 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF---------------DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLK--- 62 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----------------EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGG---
T ss_pred CEEEEeccCcCHHHHHHHHhC---------------CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHh---
Confidence 379999999999999999974 589999999952 1 2368999999998532
Q ss_pred HHhhcCCCC-ccEEeeCC
Q 030299 111 VIRHFDGCK-ADLVVCDG 127 (179)
Q Consensus 111 l~~~~~~~~-~D~VlsD~ 127 (179)
.+.... +|+|+.+.
T Consensus 63 ---~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 63 ---RLKSNKIFDVVFLSP 77 (163)
T ss_dssp ---GB------SEEEE--
T ss_pred ---hccccccccEEEECC
Confidence 222222 89999874
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00021 Score=60.75 Aligned_cols=71 Identities=17% Similarity=0.273 Sum_probs=58.1
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC-CC----------CC-CCeeEEeccccchh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP-MA----------PI-EGVIQVQGDITNAR 106 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~-~~----------~~-~~v~~i~gDi~~~~ 106 (179)
+++++.||++|-|||..|..+.+.. .+|+|+++.| |. |. .-.+.+.||+...+
T Consensus 56 ~k~tD~VLEvGPGTGnLT~~lLe~~---------------kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d 120 (315)
T KOG0820|consen 56 LKPTDVVLEVGPGTGNLTVKLLEAG---------------KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD 120 (315)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhc---------------CeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC
Confidence 4899999999999999999999973 6899999999 31 11 24788899999875
Q ss_pred hHHHHHhhcCCCCccEEeeCCCCCCCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGAPDVTGL 134 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~~~~~g~ 134 (179)
+ ..||.++++.++..|..
T Consensus 121 --------~--P~fd~cVsNlPyqISSp 138 (315)
T KOG0820|consen 121 --------L--PRFDGCVSNLPYQISSP 138 (315)
T ss_pred --------C--cccceeeccCCccccCH
Confidence 2 36999999998877655
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00022 Score=60.17 Aligned_cols=72 Identities=15% Similarity=0.235 Sum_probs=57.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CCCCCeeEEeccccchhhHHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~~~~~v~~i~gDi~~~~~~~~ 110 (179)
.+++.||+||+|.|..|+.|+++. .+|+|+++.+. ....+++.+++|+...+.
T Consensus 29 ~~~d~VlEIGpG~GaLT~~Ll~~~---------------~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~--- 90 (259)
T COG0030 29 SPGDNVLEIGPGLGALTEPLLERA---------------ARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDF--- 90 (259)
T ss_pred CCCCeEEEECCCCCHHHHHHHhhc---------------CeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcc---
Confidence 558999999999999999999984 57999999983 135689999999988763
Q ss_pred HHhhcCCC-CccEEeeCCCCCCCCC
Q 030299 111 VIRHFDGC-KADLVVCDGAPDVTGL 134 (179)
Q Consensus 111 l~~~~~~~-~~D~VlsD~~~~~~g~ 134 (179)
+.- .++.|+++.+=+.|..
T Consensus 91 -----~~l~~~~~vVaNlPY~Issp 110 (259)
T COG0030 91 -----PSLAQPYKVVANLPYNISSP 110 (259)
T ss_pred -----hhhcCCCEEEEcCCCcccHH
Confidence 211 6899999987655543
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.66 E-value=7.4e-05 Score=61.76 Aligned_cols=73 Identities=18% Similarity=0.177 Sum_probs=56.3
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC--C-------CCCCeeEEeccccchhhHH
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM--A-------PIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~--~-------~~~~v~~i~gDi~~~~~~~ 109 (179)
+++|.+||-|||++|.--.++++-+++ +|.|+||+.+|. + ..+|+.-+-+|.+.++...
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~------------~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~ 138 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGP------------DGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYR 138 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTT------------TSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGT
T ss_pred CCCCCEEEEecccCCCccchhhhccCC------------CCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhh
Confidence 589999999999999999999999975 799999999993 2 2589999999999987532
Q ss_pred HHHhhcCCCCccEEeeCCC
Q 030299 110 VVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~ 128 (179)
. +- +.+|+|++|.+
T Consensus 139 ~----lv-~~VDvI~~DVa 152 (229)
T PF01269_consen 139 M----LV-EMVDVIFQDVA 152 (229)
T ss_dssp T----TS---EEEEEEE-S
T ss_pred c----cc-ccccEEEecCC
Confidence 2 33 38999999986
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00011 Score=60.17 Aligned_cols=65 Identities=17% Similarity=0.079 Sum_probs=47.6
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------C---------------CCCee
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P---------------IEGVI 96 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------~---------------~~~v~ 96 (179)
.++.+|||+|||.|--+.+|+++ +..|+|||+++.. . ...|+
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~---------------G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~ 100 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ---------------GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEIT 100 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC---------------CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceE
Confidence 56789999999999999999985 3689999999841 0 13477
Q ss_pred EEeccccchhhHHHHHhhcCCCCccEEeeC
Q 030299 97 QVQGDITNARTAEVVIRHFDGCKADLVVCD 126 (179)
Q Consensus 97 ~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD 126 (179)
+.++|+++.... ....||.|+--
T Consensus 101 ~~~~D~~~l~~~-------~~~~fd~v~D~ 123 (218)
T PRK13255 101 IYCGDFFALTAA-------DLADVDAVYDR 123 (218)
T ss_pred EEECcccCCCcc-------cCCCeeEEEeh
Confidence 789999886421 11356777643
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00014 Score=62.14 Aligned_cols=92 Identities=20% Similarity=0.236 Sum_probs=58.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-------------CCCCeeEEeccccchh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------------PIEGVIQVQGDITNAR 106 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-------------~~~~v~~i~gDi~~~~ 106 (179)
..|.+||||.|-+||||.+++.. + ...|++||.|... ....++++++|+++..
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~g-G-------------A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l 187 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAG-G-------------AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFL 187 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHT-T-------------ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHH
T ss_pred cCCCceEEecCCCCHHHHHHHHC-C-------------CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHH
Confidence 45889999999999999998753 2 3589999999731 2357889999998853
Q ss_pred hHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHH
Q 030299 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSI 151 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~ 151 (179)
+++.+ .++||+|+.|.+.-..+.+.... --.+|+..+++
T Consensus 188 --~~~~~---~~~fD~IIlDPPsF~k~~~~~~~-~y~~L~~~a~~ 226 (286)
T PF10672_consen 188 --KRLKK---GGRFDLIILDPPSFAKSKFDLER-DYKKLLRRAMK 226 (286)
T ss_dssp --HHHHH---TT-EEEEEE--SSEESSTCEHHH-HHHHHHHHHHH
T ss_pred --HHHhc---CCCCCEEEECCCCCCCCHHHHHH-HHHHHHHHHHH
Confidence 23322 35899999998876676655432 12344444443
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.001 Score=55.97 Aligned_cols=70 Identities=11% Similarity=0.034 Sum_probs=49.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------------CCCCeeEEeccccc
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------PIEGVIQVQGDITN 104 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------------~~~~v~~i~gDi~~ 104 (179)
..+.+||+||||.|+.+..++...+ ...|+++|+++.. ..++++++.+|..+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~-------------~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~ 137 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKS-------------VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFK 137 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCC-------------cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHH
Confidence 3456999999999999988877542 3689999999831 02456666767654
Q ss_pred hhhHHHHHhhcCCCCccEEeeCCCC
Q 030299 105 ARTAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 105 ~~~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
.- +.. .++||+|++|...
T Consensus 138 ~l------~~~-~~~yDvIi~D~~~ 155 (270)
T TIGR00417 138 FL------ADT-ENTFDVIIVDSTD 155 (270)
T ss_pred HH------HhC-CCCccEEEEeCCC
Confidence 21 112 3589999999763
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0001 Score=61.28 Aligned_cols=37 Identities=19% Similarity=0.253 Sum_probs=30.2
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~ 89 (179)
+.++.+|||+|||+|..+..++.. + ...|+|+|+++.
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~-g-------------~~~v~giDis~~ 153 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKL-G-------------AKKVLAVDIDPQ 153 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHc-C-------------CCeEEEEECCHH
Confidence 467899999999999888876654 3 247999999984
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00017 Score=60.48 Aligned_cols=73 Identities=15% Similarity=0.173 Sum_probs=52.1
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNAR 106 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~ 106 (179)
++||++|+|.|.|.|++|.++++.+++ .|+|+.+|..+.. .+ .+|.+...|+.+.-
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p------------~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g 105 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGP------------TGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEG 105 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTT------------TSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG-
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCC------------CeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccc
Confidence 489999999999999999999999975 7999999998731 23 47899999997532
Q ss_pred hHHHHHhhcCCCCccEEeeCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
.. ..+ +..+|.|+.|+.
T Consensus 106 ~~----~~~-~~~~DavfLDlp 122 (247)
T PF08704_consen 106 FD----EEL-ESDFDAVFLDLP 122 (247)
T ss_dssp -S----TT--TTSEEEEEEESS
T ss_pred cc----ccc-cCcccEEEEeCC
Confidence 10 011 357999999995
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00021 Score=57.35 Aligned_cols=72 Identities=11% Similarity=0.012 Sum_probs=51.8
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchhhH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNARTA 108 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~~~ 108 (179)
+|.+||||+||+|.++..++.+. ...|++||.++.. .. .+++++++|+.+.-
T Consensus 49 ~g~~vLDLfaGsG~lglea~srg--------------a~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l-- 112 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRG--------------AKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRAL-- 112 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCC--------------CCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHH--
Confidence 57899999999999999999884 2589999999831 12 25788899986532
Q ss_pred HHHHhhcCCCCccEEeeCCCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGAPD 130 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~~ 130 (179)
+.+.. ....+|+|+.|.+..
T Consensus 113 ~~~~~--~~~~~dvv~~DPPy~ 132 (189)
T TIGR00095 113 KFLAK--KPTFDNVIYLDPPFF 132 (189)
T ss_pred HHhhc--cCCCceEEEECcCCC
Confidence 11111 123589999997653
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0003 Score=59.94 Aligned_cols=75 Identities=17% Similarity=0.182 Sum_probs=56.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~~ 107 (179)
.+..+|||||++.|..|.+++..++. +++|+++|..+.. .+ ..++++.||..+.
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~------------~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~-- 182 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPE------------SGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAES-- 182 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCC------------CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH--
Confidence 45789999999999999999998764 6899999999831 23 3688889998763
Q ss_pred HHHHHhhcCCCCccEEeeCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~ 128 (179)
+.++......++||+|+.|+.
T Consensus 183 L~~l~~~~~~~~FD~VFIDa~ 203 (278)
T PLN02476 183 LKSMIQNGEGSSYDFAFVDAD 203 (278)
T ss_pred HHHHHhcccCCCCCEEEECCC
Confidence 233322112358999999986
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00041 Score=55.30 Aligned_cols=92 Identities=18% Similarity=0.185 Sum_probs=67.6
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC------CCCCCeeEEeccccchhhHHHHHh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------APIEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~------~~~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
+.|..||++|.|+|-+|..++.+.-. ...+.+++.++- +..+++.++.||.++.++. +.
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~------------~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~--l~- 111 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVR------------PESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTT--LG- 111 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCC------------ccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHH--Hh-
Confidence 34678999999999999999887542 468999999983 4578999999999998742 22
Q ss_pred hcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHH
Q 030299 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSI 151 (179)
Q Consensus 114 ~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~ 151 (179)
.+++..||.|+|-.+ ..+..-..+++++..++.
T Consensus 112 e~~gq~~D~viS~lP-----ll~~P~~~~iaile~~~~ 144 (194)
T COG3963 112 EHKGQFFDSVISGLP-----LLNFPMHRRIAILESLLY 144 (194)
T ss_pred hcCCCeeeeEEeccc-----cccCcHHHHHHHHHHHHH
Confidence 245668999998654 233444556666666655
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00019 Score=58.41 Aligned_cols=66 Identities=20% Similarity=0.090 Sum_probs=47.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~ 109 (179)
.++.+|||||||+|.++..+++. ...|+++|+++.. ....+.++++|+.+...
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~---------------~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-- 109 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL---------------GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAA-- 109 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc---------------CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhh--
Confidence 46789999999999999988775 2579999999731 01245666777765421
Q ss_pred HHHhhcCCCCccEEeeCC
Q 030299 110 VVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~ 127 (179)
..+.+||+|++..
T Consensus 110 -----~~~~~fD~Ii~~~ 122 (233)
T PRK05134 110 -----EHPGQFDVVTCME 122 (233)
T ss_pred -----hcCCCccEEEEhh
Confidence 1236899998854
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0002 Score=57.60 Aligned_cols=65 Identities=20% Similarity=0.164 Sum_probs=46.7
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~~ 109 (179)
++.+|||+|||+|.++..+++. ...++++|+++.. ...++.+..+|+.+...
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~---------------~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-- 107 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL---------------GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAE-- 107 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc---------------CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhc--
Confidence 4779999999999999988764 2569999998731 12257777787765431
Q ss_pred HHHhhcCCCCccEEeeCC
Q 030299 110 VVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~ 127 (179)
-...+||+|++..
T Consensus 108 -----~~~~~~D~i~~~~ 120 (224)
T TIGR01983 108 -----KGAKSFDVVTCME 120 (224)
T ss_pred -----CCCCCccEEEehh
Confidence 0125799998864
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0002 Score=63.78 Aligned_cols=70 Identities=24% Similarity=0.262 Sum_probs=52.8
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC--CCeeEEeccccchhhH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI--EGVIQVQGDITNARTA 108 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~--~~v~~i~gDi~~~~~~ 108 (179)
|++||||.|-||+||.+++..- ..+|++||++.-. .+ ..+.++++|+++.-.
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gG--------------A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~- 282 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGG--------------ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLR- 282 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcC--------------CCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHH-
Confidence 8999999999999999998752 3599999999831 12 236799999998532
Q ss_pred HHHHhhcCCCCccEEeeCCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~ 129 (179)
+... .+.+||+|+.|.+.
T Consensus 283 -~~~~--~g~~fDlIilDPPs 300 (393)
T COG1092 283 -KAER--RGEKFDLIILDPPS 300 (393)
T ss_pred -HHHh--cCCcccEEEECCcc
Confidence 2221 24589999999753
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00015 Score=71.68 Aligned_cols=67 Identities=19% Similarity=0.199 Sum_probs=51.5
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------C--C----------------CC
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P--I----------------EG 94 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~--~----------------~~ 94 (179)
+.+|||||||+|..+..++++.+ ..+|+|+|+++.. . + .+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~-------------~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~r 185 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWL-------------PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDR 185 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHHHHHcCccccccccccccccccccc
Confidence 46899999999999999999875 4799999999941 0 0 25
Q ss_pred eeEEeccccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 95 VIQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 95 v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
++++++|+.+... . .+.+||+|+|+.+
T Consensus 186 V~f~~sDl~~~~~------~-~~~~fDlIVSNPP 212 (1082)
T PLN02672 186 VEFYESDLLGYCR------D-NNIELDRIVGCIP 212 (1082)
T ss_pred EEEEECchhhhcc------c-cCCceEEEEECCC
Confidence 8999999987421 0 1136999999875
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00031 Score=61.70 Aligned_cols=69 Identities=12% Similarity=0.209 Sum_probs=50.0
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhHHHH
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~~~l 111 (179)
.+||||+||+|.++..++... .+|+|+|+++.. .+.+++++.+|+.+.- +.+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~---------------~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l--~~~ 270 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF---------------RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFT--QAM 270 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC---------------CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHH--HHH
Confidence 579999999999999887753 589999999831 2457899999997742 222
Q ss_pred Hhhc----------CCCCccEEeeCCC
Q 030299 112 IRHF----------DGCKADLVVCDGA 128 (179)
Q Consensus 112 ~~~~----------~~~~~D~VlsD~~ 128 (179)
.... ...++|+|+.|.+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~D~v~lDPP 297 (362)
T PRK05031 271 NGVREFNRLKGIDLKSYNFSTIFVDPP 297 (362)
T ss_pred hhcccccccccccccCCCCCEEEECCC
Confidence 2110 0225899999965
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00033 Score=56.49 Aligned_cols=67 Identities=13% Similarity=0.173 Sum_probs=50.3
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCeeEEeccccchhhHHHH
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~~~v~~i~gDi~~~~~~~~l 111 (179)
..+||||||-|.|...+|.+.+ +..++|+|+... ..+.|+.++++|....-
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~P-------------d~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l----- 80 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNP-------------DINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELL----- 80 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHST-------------TSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHH-----
T ss_pred CeEEEecCCCCHHHHHHHHHCC-------------CCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHH-----
Confidence 3899999999999999999976 689999999983 25789999999998742
Q ss_pred HhhcCCCCccEEeeCC
Q 030299 112 IRHFDGCKADLVVCDG 127 (179)
Q Consensus 112 ~~~~~~~~~D~VlsD~ 127 (179)
...++++.+|-|...-
T Consensus 81 ~~~~~~~~v~~i~i~F 96 (195)
T PF02390_consen 81 RRLFPPGSVDRIYINF 96 (195)
T ss_dssp HHHSTTTSEEEEEEES
T ss_pred hhcccCCchheEEEeC
Confidence 1234556788876644
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00034 Score=64.29 Aligned_cols=69 Identities=22% Similarity=0.199 Sum_probs=51.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC------C------------CCCCeeEEecc
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------A------------PIEGVIQVQGD 101 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~------~------------~~~~v~~i~gD 101 (179)
+++.+|||||||.|..+..+++. +. ..+|+++|+++. + ..++++++.+|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~------------v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~D 362 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PD------------VEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDD 362 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CC------------cCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEECh
Confidence 45789999999999999998864 31 369999999883 1 01578888888
Q ss_pred ccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 102 ITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 102 i~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
..+.- +.. .++||+|++|..
T Consensus 363 a~~~l------~~~-~~~fDvIi~D~~ 382 (521)
T PRK03612 363 AFNWL------RKL-AEKFDVIIVDLP 382 (521)
T ss_pred HHHHH------HhC-CCCCCEEEEeCC
Confidence 87632 112 358999999964
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0003 Score=60.67 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=30.2
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~ 89 (179)
.|.+|||||||.|.++-.++.+- ...|+|+|.++.
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~G--------------A~~ViGiDP~~l 149 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRG--------------AKSVIGIDPSPL 149 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcC--------------CCEEEEECCChH
Confidence 48899999999999998888773 368999999984
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00056 Score=59.42 Aligned_cols=78 Identities=18% Similarity=0.237 Sum_probs=51.7
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------C-CC-CeeEE-eccccchh
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IE-GVIQV-QGDITNAR 106 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~-~~-~v~~i-~gDi~~~~ 106 (179)
++.+|||||||+|+....++.+.. ...++|+|+++.. + +. .+++. +.|..+..
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~-------------~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~ 180 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEY-------------GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIF 180 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCC-------------CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhh
Confidence 457899999999999998888765 5799999999841 1 22 34443 23332211
Q ss_pred hHHHHHhhcCCCCccEEeeCCCCCCCCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLH 135 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~~~~~g~~ 135 (179)
..+. .++..||+|+|+.++-.+...
T Consensus 181 --~~i~--~~~~~fDlivcNPPf~~s~~e 205 (321)
T PRK11727 181 --KGII--HKNERFDATLCNPPFHASAAE 205 (321)
T ss_pred --hccc--ccCCceEEEEeCCCCcCcchh
Confidence 0000 134689999999887666654
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00035 Score=56.92 Aligned_cols=75 Identities=19% Similarity=0.218 Sum_probs=56.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~~ 107 (179)
.+..+||+||++.|.-+.++++.+++ +++|+.+|+.|.. .+ ..++++.||..+.
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~------------~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~-- 109 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPE------------DGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEV-- 109 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTT------------TSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHH--
T ss_pred cCCceEEEeccccccHHHHHHHhhcc------------cceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhh--
Confidence 45679999999999999999998874 6999999999831 22 3688899998763
Q ss_pred HHHHHhhcCCCCccEEeeCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~ 128 (179)
+.++.+..+.++||+|+.|+.
T Consensus 110 l~~l~~~~~~~~fD~VFiDa~ 130 (205)
T PF01596_consen 110 LPELANDGEEGQFDFVFIDAD 130 (205)
T ss_dssp HHHHHHTTTTTSEEEEEEEST
T ss_pred HHHHHhccCCCceeEEEEccc
Confidence 344444333458999999985
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00045 Score=60.52 Aligned_cols=70 Identities=13% Similarity=0.253 Sum_probs=49.9
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~~~ 110 (179)
+.+|||||||+|.++..++... ..|+|+|+++.. .+.+++++.+|+.+... .
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~---------------~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~--~ 260 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNF---------------RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQ--A 260 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhC---------------CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHH--H
Confidence 3479999999999999888763 489999999831 24578999999977431 1
Q ss_pred HHh--hc---C-----CCCccEEeeCCC
Q 030299 111 VIR--HF---D-----GCKADLVVCDGA 128 (179)
Q Consensus 111 l~~--~~---~-----~~~~D~VlsD~~ 128 (179)
... .+ . ...+|+|+.|.+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~d~v~lDPP 288 (353)
T TIGR02143 261 MNGVREFRRLKGIDLKSYNCSTIFVDPP 288 (353)
T ss_pred HhhccccccccccccccCCCCEEEECCC
Confidence 100 01 1 124899999965
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00054 Score=55.73 Aligned_cols=72 Identities=24% Similarity=0.278 Sum_probs=46.5
Q ss_pred hCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCC-CeeEEecccc
Q 030299 36 FNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDIT 103 (179)
Q Consensus 36 ~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~-~v~~i~gDi~ 103 (179)
.+.+++|++|+|+.||-|.|+..++...+ ...|+|+|++|.. ... .+..+++|..
T Consensus 96 ~~~v~~~e~VlD~faGIG~f~l~~ak~~~-------------~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~ 162 (200)
T PF02475_consen 96 ANLVKPGEVVLDMFAGIGPFSLPIAKHGK-------------AKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAR 162 (200)
T ss_dssp HTC--TT-EEEETT-TTTTTHHHHHHHT--------------SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GG
T ss_pred HhcCCcceEEEEccCCccHHHHHHhhhcC-------------ccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHH
Confidence 34568899999999999999999988533 4689999999941 133 4778899988
Q ss_pred chhhHHHHHhhcCCCCccEEeeCCCC
Q 030299 104 NARTAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 104 ~~~~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
+.. +...+|.|+.+.+.
T Consensus 163 ~~~---------~~~~~drvim~lp~ 179 (200)
T PF02475_consen 163 EFL---------PEGKFDRVIMNLPE 179 (200)
T ss_dssp G------------TT-EEEEEE--TS
T ss_pred Hhc---------CccccCEEEECChH
Confidence 853 24689999998754
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00067 Score=61.42 Aligned_cols=70 Identities=23% Similarity=0.251 Sum_probs=46.9
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchhhH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNARTA 108 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~~~ 108 (179)
++..|+|+|||+|..+..+++..... +...+|+||+-+++. .. ..|+++++|+++.+.
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~---------~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l- 255 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARA---------GGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL- 255 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHH---------CCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH-
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHh---------CCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC-
Confidence 36789999999999998776543100 014699999999952 11 469999999999873
Q ss_pred HHHHhhcCCCCccEEeeCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~ 128 (179)
+ .++|+|+|-..
T Consensus 256 -------p-ekvDIIVSElL 267 (448)
T PF05185_consen 256 -------P-EKVDIIVSELL 267 (448)
T ss_dssp -------S-S-EEEEEE---
T ss_pred -------C-CceeEEEEecc
Confidence 3 48999999764
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >KOG3674 consensus FtsJ-like RNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0013 Score=59.91 Aligned_cols=146 Identities=24% Similarity=0.264 Sum_probs=91.4
Q ss_pred CcchhhhcHHhHHHHhCCC-CCCC--EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC--------
Q 030299 21 WRARSAFKLLQIDEEFNIF-EGVK--RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-------- 89 (179)
Q Consensus 21 ~~sRaa~KL~eid~~~~ll-~~g~--~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-------- 89 (179)
+...|+.||.|+...|.+. .++- .=+-||=|||.|-.-+--.+.+ ...++.-.++=.|..++|-
T Consensus 109 ~~T~AwcKl~Eil~~fpl~~~ea~~inS~HLCEaPGaFIaslnhyL~s-----~r~k~~~~W~W~anTLNPY~E~n~~~~ 183 (696)
T KOG3674|consen 109 NVTKAWCKLCEILEVFPLDIFEASSINSFHLCEAPGAFIASLNHYLMS-----SRGKNMSYWKWGANTLNPYFENNSCFD 183 (696)
T ss_pred HHHHHHHHHHHHHHhcCccccccccccceeeecCccHHHHHHHHHHHh-----ccCCccceeeeccCccCcccccchHHH
Confidence 4568899999999999875 4554 3489999999997644322210 0000011223334444441
Q ss_pred --------CC-CCCeeE---EeccccchhhHHHHHh--hcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHH----HHHH
Q 030299 90 --------AP-IEGVIQ---VQGDITNARTAEVVIR--HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLIL----AVSI 151 (179)
Q Consensus 90 --------~~-~~~v~~---i~gDi~~~~~~~~l~~--~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~----~AL~ 151 (179)
.+ +.+--| ..|||.+...+.-+.+ .+ .++||+|.+||+.++.|...-++....+|.. .||+
T Consensus 184 mi~DDr~I~~Tld~WyFgpd~tGdi~~~~~~~~l~~~v~~-~gtvdLVTADGS~dcqg~pgeqE~iVssL~~aEV~~AL~ 262 (696)
T KOG3674|consen 184 MIIDDRHIRPTLDQWYFGPDDTGDIEKFTEEYLLKQEVKL-AGTVDLVTADGSTDCQGKPGEQESIVSSLISAEVEVALK 262 (696)
T ss_pred HhccchhhhccccceeeCCCCCccHHHHHHHHHHHHHHHh-hceEEEEecCCccccCCCCccHHHHHHHHHHHHHHHHHH
Confidence 11 111111 2578877654333333 12 3589999999999999999999888777774 4444
Q ss_pred H-----------H--H---HHHHHHHHHHhhceEEEe
Q 030299 152 Q-----------F--F---IYELVFCLRQLLQYVILD 172 (179)
Q Consensus 152 ~-----------~--~---~~~~~~~~~~~f~~v~~~ 172 (179)
. | | +..+||.|+=.|+.|.+-
T Consensus 263 ~L~~gG~filKmft~fe~cS~~lmylLnc~F~~Vh~f 299 (696)
T KOG3674|consen 263 LLRRGGRFILKMFTFFEKCSRDLMYLLNCNFSSVHAF 299 (696)
T ss_pred HHhcCCeehHHHHHHHHHhhHHHHHHHHhhHhhhhcc
Confidence 2 1 1 378999999999998763
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00045 Score=57.88 Aligned_cols=69 Identities=19% Similarity=0.291 Sum_probs=53.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CCCCCeeEEeccccchhhHHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~~~~~v~~i~gDi~~~~~~~~ 110 (179)
.++..|+|+|+|+|.+|..++++. ..|+++|+.+. ...++++.+.+|+.+.+....
T Consensus 29 ~~~~~VlEiGpG~G~lT~~L~~~~---------------~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~ 93 (262)
T PF00398_consen 29 SEGDTVLEIGPGPGALTRELLKRG---------------KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDL 93 (262)
T ss_dssp GTTSEEEEESSTTSCCHHHHHHHS---------------SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGH
T ss_pred CCCCEEEEeCCCCccchhhHhccc---------------CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHh
Confidence 478999999999999999999884 58999999983 124689999999998765322
Q ss_pred HHhhcCCCCccEEeeCCC
Q 030299 111 VIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 111 l~~~~~~~~~D~VlsD~~ 128 (179)
+ ......|+++.+
T Consensus 94 ~-----~~~~~~vv~NlP 106 (262)
T PF00398_consen 94 L-----KNQPLLVVGNLP 106 (262)
T ss_dssp C-----SSSEEEEEEEET
T ss_pred h-----cCCceEEEEEec
Confidence 1 235678888765
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0014 Score=52.01 Aligned_cols=111 Identities=17% Similarity=0.067 Sum_probs=62.9
Q ss_pred cchhhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------
Q 030299 22 RARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------- 90 (179)
Q Consensus 22 ~sRaa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------- 90 (179)
+..-|.-|+++ .-.++++.|+|-.||.|.+...++...... .+ ........++|+|+++..
T Consensus 13 ~~~lA~~ll~l----a~~~~~~~vlDP~CGsGtiliEaa~~~~~~---~~-~~~~~~~~~~g~Di~~~~v~~a~~N~~~a 84 (179)
T PF01170_consen 13 RPTLAAALLNL----AGWRPGDVVLDPFCGSGTILIEAALMGANI---PP-LNDINELKIIGSDIDPKAVRGARENLKAA 84 (179)
T ss_dssp -HHHHHHHHHH----TT--TTS-EEETT-TTSHHHHHHHHHHTTT---ST-TTH-CH--EEEEESSHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHH----hCCCCCCEEeecCCCCCHHHHHHHHHhhCc---cc-ccccccccEEecCCCHHHHHHHHHHHHhc
Confidence 44445555543 123688999999999999999887765421 00 000001249999999841
Q ss_pred CCC-CeeEEeccccchhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHH
Q 030299 91 PIE-GVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSI 151 (179)
Q Consensus 91 ~~~-~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~ 151 (179)
... .+.+.++|+++.+ +.++.+|+|++|.+ .|.+.-++.....|+...+.
T Consensus 85 g~~~~i~~~~~D~~~l~--------~~~~~~d~IvtnPP---yG~r~~~~~~~~~ly~~~~~ 135 (179)
T PF01170_consen 85 GVEDYIDFIQWDARELP--------LPDGSVDAIVTNPP---YGRRLGSKKDLEKLYRQFLR 135 (179)
T ss_dssp T-CGGEEEEE--GGGGG--------GTTSBSCEEEEE-----STTSHCHHHHHHHHHHHHHH
T ss_pred ccCCceEEEecchhhcc--------cccCCCCEEEECcc---hhhhccCHHHHHHHHHHHHH
Confidence 122 4678899999976 24568999999986 46655554444566555554
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0003 Score=61.71 Aligned_cols=63 Identities=21% Similarity=0.296 Sum_probs=52.1
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC-----------CCCeeEEeccccchhhHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------IEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~-----------~~~v~~i~gDi~~~~~~~~ 110 (179)
+..|||+|||.|..+..+++.. ..+|+||+-+.|.. -..+.+|.|-|.+.+
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAG--------------A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdie---- 239 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAG--------------AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIE---- 239 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhC--------------cceEEEEehhHHHHHHHHHHhcCCccceEEEccCcccccc----
Confidence 6789999999999999998874 46999999999842 246788899999987
Q ss_pred HHhhcCCCCccEEeeCC
Q 030299 111 VIRHFDGCKADLVVCDG 127 (179)
Q Consensus 111 l~~~~~~~~~D~VlsD~ 127 (179)
++ +++|+++|..
T Consensus 240 ----LP-Ek~DviISEP 251 (517)
T KOG1500|consen 240 ----LP-EKVDVIISEP 251 (517)
T ss_pred ----Cc-hhccEEEecc
Confidence 45 5899999964
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0011 Score=55.59 Aligned_cols=86 Identities=17% Similarity=0.295 Sum_probs=62.7
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-------C------CCCeeEEeccccchh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------P------IEGVIQVQGDITNAR 106 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-------~------~~~v~~i~gDi~~~~ 106 (179)
+.|.+|||-|.|=|..+..++++- ..+|+.++..|.- | -.++..+.||+.+.
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rG--------------A~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~- 197 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERG--------------AIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEV- 197 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcC--------------CcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHH-
Confidence 348999999999999999988873 3599999988841 1 12678999998873
Q ss_pred hHHHHHhhcCCCCccEEeeCCC-CCCCCCCcccHHHHHHHHHHHH
Q 030299 107 TAEVVIRHFDGCKADLVVCDGA-PDVTGLHDMDEFVQSQLILAVS 150 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~-~~~~g~~~~d~~~q~~L~~~AL 150 (179)
.+.|++..||+|++|.+ ++-.| +..+.+++..-.
T Consensus 198 -----V~~~~D~sfDaIiHDPPRfS~Ag-----eLYseefY~El~ 232 (287)
T COG2521 198 -----VKDFDDESFDAIIHDPPRFSLAG-----ELYSEEFYRELY 232 (287)
T ss_pred -----HhcCCccccceEeeCCCccchhh-----hHhHHHHHHHHH
Confidence 45688899999999975 33333 344555554433
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00031 Score=58.76 Aligned_cols=65 Identities=15% Similarity=0.201 Sum_probs=43.1
Q ss_pred CCCCcCCCCchHHHHHHhhCCcchhhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCe
Q 030299 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPL 80 (179)
Q Consensus 1 ~~~~~~~~~d~y~~~a~~~~~~sRaa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~ 80 (179)
|++++...++.| ..| +-.|++ ++.+ +.+.+-..-+..+|+|||+|.-++.+++.. -.
T Consensus 1 ~~~~~~~~a~~Y-~~A-RP~YPt----dw~~--~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~---------------k~ 57 (261)
T KOG3010|consen 1 MAKLFDKQAADY-LNA-RPSYPT----DWFK--KIASRTEGHRLAWDVGTGNGQAARGIAEHY---------------KE 57 (261)
T ss_pred CcccccccHHHH-hhc-CCCCcH----HHHH--HHHhhCCCcceEEEeccCCCcchHHHHHhh---------------hh
Confidence 677778888887 444 445551 1211 122221222379999999997788888774 37
Q ss_pred EEEEeCCC
Q 030299 81 IVAIDLQP 88 (179)
Q Consensus 81 VvavD~~~ 88 (179)
|||+|+++
T Consensus 58 VIatD~s~ 65 (261)
T KOG3010|consen 58 VIATDVSE 65 (261)
T ss_pred heeecCCH
Confidence 99999998
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0012 Score=54.06 Aligned_cols=72 Identities=21% Similarity=0.184 Sum_probs=60.8
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CCCCCeeEEeccccchhhHH
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~~~~~v~~i~gDi~~~~~~~ 109 (179)
+++|++||=|||+.|.-..+++.-++ .+.|+||+.+|- +..+|+.-+.+|.+.++...
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~-------------~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~ 140 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVG-------------EGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYR 140 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccC-------------CCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhh
Confidence 58999999999999999999999886 599999999983 23579999999999987644
Q ss_pred HHHhhcCCCCccEEeeCCC
Q 030299 110 VVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~ 128 (179)
.+ - +.+|+|..|.+
T Consensus 141 ~~----V-e~VDviy~DVA 154 (231)
T COG1889 141 HL----V-EKVDVIYQDVA 154 (231)
T ss_pred hh----c-ccccEEEEecC
Confidence 33 2 36999999986
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0041 Score=50.72 Aligned_cols=78 Identities=19% Similarity=0.183 Sum_probs=48.4
Q ss_pred HHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------------------C
Q 030299 32 IDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------------------P 91 (179)
Q Consensus 32 id~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------------------~ 91 (179)
+.++.+ +.+++.++|||||-|.-...++-..+ -.+++||++.+.. .
T Consensus 34 il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~-------------~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~ 99 (205)
T PF08123_consen 34 ILDELN-LTPDDVFYDLGSGVGNVVFQAALQTG-------------CKKSVGIEILPELHDLAEELLEELKKRMKHYGKR 99 (205)
T ss_dssp HHHHTT---TT-EEEEES-TTSHHHHHHHHHH---------------SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB-
T ss_pred HHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcC-------------CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344555 47899999999999999888777665 3569999999830 1
Q ss_pred CCCeeEEeccccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 92 IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 92 ~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
...+++.+||+.+.+..+.+. ...|+|+++..
T Consensus 100 ~~~v~l~~gdfl~~~~~~~~~-----s~AdvVf~Nn~ 131 (205)
T PF08123_consen 100 PGKVELIHGDFLDPDFVKDIW-----SDADVVFVNNT 131 (205)
T ss_dssp --EEEEECS-TTTHHHHHHHG-----HC-SEEEE--T
T ss_pred cccceeeccCccccHhHhhhh-----cCCCEEEEecc
Confidence 235778899999876544432 24799999754
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0016 Score=57.70 Aligned_cols=69 Identities=16% Similarity=0.015 Sum_probs=50.7
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----CC-------------CCCeeEEecc
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----AP-------------IEGVIQVQGD 101 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----~~-------------~~~v~~i~gD 101 (179)
....+||+||||.|+.+..+++..+ ..+|++||+++. +. .++++++.+|
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~-------------v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~D 215 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYET-------------VLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCD 215 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCC-------------CCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECc
Confidence 3456999999999998888776532 478999999993 10 2578888888
Q ss_pred ccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 102 ITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 102 i~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
..+.- .. ..+.||+|++|..
T Consensus 216 a~~fL------~~-~~~~YDVIIvDl~ 235 (374)
T PRK01581 216 AKEFL------SS-PSSLYDVIIIDFP 235 (374)
T ss_pred HHHHH------Hh-cCCCccEEEEcCC
Confidence 88632 11 2357999999964
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00064 Score=56.47 Aligned_cols=64 Identities=23% Similarity=0.281 Sum_probs=46.3
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC-CC------CCCCeeEEeccccchhhHHHHHhh
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP-MA------PIEGVIQVQGDITNARTAEVVIRH 114 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~-~~------~~~~v~~i~gDi~~~~~~~~l~~~ 114 (179)
+..|||||||+|--++++.+. ....+|+|+|| |. .++| .++.+|+-.--.
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~---------------Gh~wiGvDiSpsML~~a~~~e~eg-dlil~DMG~Glp------- 107 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDS---------------GHQWIGVDISPSMLEQAVERELEG-DLILCDMGEGLP------- 107 (270)
T ss_pred CcEEEEeccCCCcchheeccC---------------CceEEeecCCHHHHHHHHHhhhhc-CeeeeecCCCCC-------
Confidence 568999999999999988663 46899999999 31 2332 256777764321
Q ss_pred cCCCCccEEeeCCC
Q 030299 115 FDGCKADLVVCDGA 128 (179)
Q Consensus 115 ~~~~~~D~VlsD~~ 128 (179)
|..+.||-|+|=.+
T Consensus 108 frpGtFDg~ISISA 121 (270)
T KOG1541|consen 108 FRPGTFDGVISISA 121 (270)
T ss_pred CCCCccceEEEeee
Confidence 45678999888554
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0017 Score=54.90 Aligned_cols=79 Identities=20% Similarity=0.294 Sum_probs=59.5
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC--------C---CC---CCeeEEeccccchh
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM--------A---PI---EGVIQVQGDITNAR 106 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~--------~---~~---~~v~~i~gDi~~~~ 106 (179)
++++|||+|+|+|-.+.-+.+.++++ .+....+|+.+|++|. + ++ ..+.++.+|..+.+
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~-------~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp 172 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQ-------FGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP 172 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccc-------cCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC
Confidence 47899999999999999999988631 1122378999999993 1 22 23889999999987
Q ss_pred hHHHHHhhcCCCCccEEeeCCCCCCCCCCcccH
Q 030299 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDE 139 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~ 139 (179)
|++..+|....-. |.+|..|
T Consensus 173 --------Fdd~s~D~yTiaf-----GIRN~th 192 (296)
T KOG1540|consen 173 --------FDDDSFDAYTIAF-----GIRNVTH 192 (296)
T ss_pred --------CCCCcceeEEEec-----ceecCCC
Confidence 6888999988643 5666554
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00089 Score=53.56 Aligned_cols=70 Identities=21% Similarity=0.214 Sum_probs=45.7
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCC-CeeEEeccccchhhH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNARTA 108 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~-~v~~i~gDi~~~~~~ 108 (179)
+|.+||||.||+|.....++.|- ...|+.||.++.. ... .+..+.+|....-.
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG--------------A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~- 106 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG--------------AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLL- 106 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT---------------SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHH-
T ss_pred CCCeEEEcCCccCccHHHHHhcC--------------CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHH-
Confidence 68899999999999999988874 3699999999841 122 47777888765421
Q ss_pred HHHHhhcCCCCccEEeeCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~ 128 (179)
+.. -.+.+||+|+.|.+
T Consensus 107 -~~~--~~~~~fDiIflDPP 123 (183)
T PF03602_consen 107 -KLA--KKGEKFDIIFLDPP 123 (183)
T ss_dssp -HHH--HCTS-EEEEEE--S
T ss_pred -hhc--ccCCCceEEEECCC
Confidence 111 13578999999954
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0011 Score=58.75 Aligned_cols=65 Identities=20% Similarity=0.136 Sum_probs=48.8
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~~~ 110 (179)
+.+|||++||.|.++..++...+ ...|+++|+++.. .+.++++.++|+....
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~-------------~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l---- 120 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETG-------------VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALL---- 120 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCC-------------CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHH----
Confidence 46899999999999999988754 3589999999831 2445667788875531
Q ss_pred HHhhcCCCCccEEeeCC
Q 030299 111 VIRHFDGCKADLVVCDG 127 (179)
Q Consensus 111 l~~~~~~~~~D~VlsD~ 127 (179)
.. ...||+|+.|.
T Consensus 121 --~~--~~~fD~V~lDP 133 (382)
T PRK04338 121 --HE--ERKFDVVDIDP 133 (382)
T ss_pred --hh--cCCCCEEEECC
Confidence 11 35699999995
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0036 Score=54.06 Aligned_cols=76 Identities=17% Similarity=0.154 Sum_probs=58.9
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CC-CCeeEEeccccchhhHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PI-EGVIQVQGDITNARTAE 109 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~~-~~v~~i~gDi~~~~~~~ 109 (179)
++|..++|.=+|-||.|..++++.+ .++|+|+|..|.. +. .++++++++..+...
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~-------------~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~-- 83 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLG-------------TGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFE-- 83 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCC-------------CCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHH--
Confidence 6788999999999999999999875 4899999999842 22 368899999888642
Q ss_pred HHHhhcCCCCccEEeeCCCCCC
Q 030299 110 VVIRHFDGCKADLVVCDGAPDV 131 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~~~~ 131 (179)
.....+..++|.|+.|.+.+.
T Consensus 84 -~l~~~~~~~vDgIl~DLGvSS 104 (305)
T TIGR00006 84 -HLDELLVTKIDGILVDLGVSS 104 (305)
T ss_pred -HHHhcCCCcccEEEEeccCCH
Confidence 222234457999999997654
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0021 Score=54.98 Aligned_cols=67 Identities=22% Similarity=0.281 Sum_probs=49.4
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEE----eccccch
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQV----QGDITNA 105 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i----~gDi~~~ 105 (179)
+..++|+|||.|-.+..++..++ .+.|+|+|.++.+ .+ .++..+ +.|..++
T Consensus 149 ~~~ildlgtGSGaIslsll~~L~-------------~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~ 215 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGLP-------------QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDE 215 (328)
T ss_pred cceEEEecCCccHHHHHHHhcCC-------------CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccc
Confidence 45899999999999999999887 5999999999942 12 234444 4455544
Q ss_pred hhHHHHHhhcCCCCccEEeeCCC
Q 030299 106 RTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 106 ~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
.. +..++.|+++|+.+
T Consensus 216 ~~-------l~~~~~dllvsNPP 231 (328)
T KOG2904|consen 216 HP-------LLEGKIDLLVSNPP 231 (328)
T ss_pred cc-------cccCceeEEecCCC
Confidence 32 34578999999864
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.001 Score=55.12 Aligned_cols=69 Identities=14% Similarity=-0.026 Sum_probs=50.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------C---------------CCCee
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P---------------IEGVI 96 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------~---------------~~~v~ 96 (179)
.++.+||+.|||.|--..+|+.+ +..|+|+|+|+.. . ..+++
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~---------------G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~ 106 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSK---------------GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIE 106 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhC---------------CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceE
Confidence 46789999999999999999986 3689999999841 0 12678
Q ss_pred EEeccccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 97 QVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 97 ~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
++++|+++...... ..++||.|.=-++
T Consensus 107 ~~~gD~f~l~~~~~-----~~~~fD~VyDra~ 133 (226)
T PRK13256 107 IYVADIFNLPKIAN-----NLPVFDIWYDRGA 133 (226)
T ss_pred EEEccCcCCCcccc-----ccCCcCeeeeehh
Confidence 99999999742100 1246888765443
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0025 Score=51.42 Aligned_cols=69 Identities=17% Similarity=0.178 Sum_probs=53.6
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~~l 111 (179)
..-++|||||.|-.|..++...++ ....++.|++|.+ .--++..++.|+.+-
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~------------~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~------ 105 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGP------------QALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG------ 105 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCC------------CceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh------
Confidence 567999999999999999998874 6899999999953 112466778887764
Q ss_pred HhhcCCCCccEEeeCCCCCC
Q 030299 112 IRHFDGCKADLVVCDGAPDV 131 (179)
Q Consensus 112 ~~~~~~~~~D~VlsD~~~~~ 131 (179)
+..+++|+++-+-+-..
T Consensus 106 ---l~~~~VDvLvfNPPYVp 122 (209)
T KOG3191|consen 106 ---LRNESVDVLVFNPPYVP 122 (209)
T ss_pred ---hccCCccEEEECCCcCc
Confidence 23479999999876433
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0018 Score=58.35 Aligned_cols=73 Identities=29% Similarity=0.513 Sum_probs=56.1
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
.++++|+||=||-|.|+..++++. .+|+|+|+++-. .+.|++|+.+|.++....
T Consensus 292 ~~~~~vlDlYCGvG~f~l~lA~~~---------------~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~ 356 (432)
T COG2265 292 AGGERVLDLYCGVGTFGLPLAKRV---------------KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPA 356 (432)
T ss_pred cCCCEEEEeccCCChhhhhhcccC---------------CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhh
Confidence 577899999999999999999764 689999999941 367899999998875421
Q ss_pred HHHHhhcCCCCccEEeeCCCCCCCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGAPDVTGL 134 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~~~~g~ 134 (179)
...+..+|+|+.|.+ -+|.
T Consensus 357 -----~~~~~~~d~VvvDPP--R~G~ 375 (432)
T COG2265 357 -----WWEGYKPDVVVVDPP--RAGA 375 (432)
T ss_pred -----ccccCCCCEEEECCC--CCCC
Confidence 112347899999953 4454
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0017 Score=53.42 Aligned_cols=68 Identities=24% Similarity=0.175 Sum_probs=49.6
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------C------------CCCe
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P------------IEGV 95 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~------------~~~v 95 (179)
..++.+||..|||.|--..+|+++ +..|+|+|+++.. + ..+|
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~---------------G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i 99 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ---------------GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRI 99 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT---------------TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSE
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC---------------CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCce
Confidence 367789999999999999999986 3689999999841 0 1257
Q ss_pred eEEeccccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 96 IQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 96 ~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
++.+||+++.... ..++||+|.=-++
T Consensus 100 ~~~~gDfF~l~~~-------~~g~fD~iyDr~~ 125 (218)
T PF05724_consen 100 TIYCGDFFELPPE-------DVGKFDLIYDRTF 125 (218)
T ss_dssp EEEES-TTTGGGS-------CHHSEEEEEECSS
T ss_pred EEEEcccccCChh-------hcCCceEEEEecc
Confidence 8889999996531 1137999875544
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0041 Score=50.85 Aligned_cols=79 Identities=19% Similarity=0.202 Sum_probs=48.5
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC--C-----C--C-CCCeeEEeccccchhhHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP--M-----A--P-IEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~--~-----~--~-~~~v~~i~gDi~~~~~~~~ 110 (179)
+.+.|+++|..-||-..+.+..+.. -+..++|+|+|+.. . + | .+++++++||-.++++..+
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~---------~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~ 102 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLEL---------LGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQ 102 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHH---------TT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHT
T ss_pred CCCeEEEEecCCCchHHHHHHHHHH---------hCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHH
Confidence 3569999999999999988764421 01368999999942 1 1 1 2689999999999998777
Q ss_pred HHhhcCCCCccEEeeCCC
Q 030299 111 VIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 111 l~~~~~~~~~D~VlsD~~ 128 (179)
+..........+|+-|+.
T Consensus 103 v~~~~~~~~~vlVilDs~ 120 (206)
T PF04989_consen 103 VRELASPPHPVLVILDSS 120 (206)
T ss_dssp SGSS----SSEEEEESS-
T ss_pred HHHhhccCCceEEEECCC
Confidence 665433445678888864
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0029 Score=51.84 Aligned_cols=64 Identities=27% Similarity=0.350 Sum_probs=48.6
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCeeEEeccccchhhHHHHHhh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRH 114 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----~~~~v~~i~gDi~~~~~~~~l~~~ 114 (179)
+.+..+|+|||+|.|.++..++++.| ..+++.+|+-... ..++|+++-||+++.
T Consensus 98 ~~~~~~vvDvGGG~G~~~~~l~~~~P-------------~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~--------- 155 (241)
T PF00891_consen 98 FSGFKTVVDVGGGSGHFAIALARAYP-------------NLRATVFDLPEVIEQAKEADRVEFVPGDFFDP--------- 155 (241)
T ss_dssp TTTSSEEEEET-TTSHHHHHHHHHST-------------TSEEEEEE-HHHHCCHHHTTTEEEEES-TTTC---------
T ss_pred ccCccEEEeccCcchHHHHHHHHHCC-------------CCcceeeccHhhhhccccccccccccccHHhh---------
Confidence 46677999999999999999999976 5799999985431 257899999999953
Q ss_pred cCCCCccEEeeC
Q 030299 115 FDGCKADLVVCD 126 (179)
Q Consensus 115 ~~~~~~D~VlsD 126 (179)
++. +|+++.-
T Consensus 156 ~P~--~D~~~l~ 165 (241)
T PF00891_consen 156 LPV--ADVYLLR 165 (241)
T ss_dssp CSS--ESEEEEE
T ss_pred hcc--ccceeee
Confidence 443 8988873
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0016 Score=57.02 Aligned_cols=75 Identities=25% Similarity=0.372 Sum_probs=44.5
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhh-H--
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART-A-- 108 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~-~-- 108 (179)
..||||.||.|.+|..++... .+|+|||+.+.. .+.|++|+.++..+... .
T Consensus 198 ~~vlDlycG~G~fsl~la~~~---------------~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~ 262 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKKA---------------KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAK 262 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCCS---------------SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCC
T ss_pred CcEEEEeecCCHHHHHHHhhC---------------CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHh
Confidence 389999999999999998875 589999999831 46799999887754311 0
Q ss_pred -HHHHh----hcCCCCccEEeeCCCCCCCCC
Q 030299 109 -EVVIR----HFDGCKADLVVCDGAPDVTGL 134 (179)
Q Consensus 109 -~~l~~----~~~~~~~D~VlsD~~~~~~g~ 134 (179)
.++.. .+....+|+|+.|. +-+|.
T Consensus 263 ~r~~~~~~~~~~~~~~~d~vilDP--PR~G~ 291 (352)
T PF05958_consen 263 AREFNRLKGIDLKSFKFDAVILDP--PRAGL 291 (352)
T ss_dssp S-GGTTGGGS-GGCTTESEEEE-----TT-S
T ss_pred hHHHHhhhhhhhhhcCCCEEEEcC--CCCCc
Confidence 00000 01223689999985 45554
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0023 Score=52.16 Aligned_cols=61 Identities=28% Similarity=0.339 Sum_probs=50.3
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~~~ 110 (179)
.+.+.|||+|+|..|.+++... -+|+|++..|.. ...|++.+.||..+-+
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A---------------~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~---- 93 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAA---------------ERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYD---- 93 (252)
T ss_pred hhceeeccCCcchHHHHHHhhh---------------ceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccccc----
Confidence 3689999999999999999873 589999999941 1347899999999865
Q ss_pred HHhhcCCCCccEEeeCC
Q 030299 111 VIRHFDGCKADLVVCDG 127 (179)
Q Consensus 111 l~~~~~~~~~D~VlsD~ 127 (179)
| ...|+|+|-|
T Consensus 94 ----f--e~ADvvicEm 104 (252)
T COG4076 94 ----F--ENADVVICEM 104 (252)
T ss_pred ----c--cccceeHHHH
Confidence 3 4689999987
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.003 Score=47.21 Aligned_cols=50 Identities=22% Similarity=0.252 Sum_probs=39.7
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchh
Q 030299 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNAR 106 (179)
Q Consensus 44 ~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~ 106 (179)
+|+|+||+.|.++.+++...+ .++|+++|++|.. ..+++.+++..+.+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~-------------~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~~~ 61 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGA-------------EGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGDRD 61 (143)
T ss_pred CEEEccCCccHHHHHHHHhCC-------------CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeCCC
Confidence 489999999999999988754 4699999999831 2356888888887753
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0014 Score=57.12 Aligned_cols=71 Identities=21% Similarity=0.166 Sum_probs=44.6
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------C---------------CCCeeEEe
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P---------------IEGVIQVQ 99 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~---------------~~~v~~i~ 99 (179)
++.+|||||||-||=..-.... + -..++|+|++... . .....++.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-~-------------i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~ 127 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-K-------------IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIA 127 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-T--------------SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEE
T ss_pred CCCeEEEecCCCchhHHHHHhc-C-------------CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheec
Confidence 7899999999999976655443 2 3799999999831 0 12466778
Q ss_pred ccccchhhHHHHHhhcCC--CCccEEeeCCCC
Q 030299 100 GDITNARTAEVVIRHFDG--CKADLVVCDGAP 129 (179)
Q Consensus 100 gDi~~~~~~~~l~~~~~~--~~~D~VlsD~~~ 129 (179)
+|.+... +...++. .+||+|-+=-+.
T Consensus 128 ~D~f~~~----l~~~~~~~~~~FDvVScQFal 155 (331)
T PF03291_consen 128 ADCFSES----LREKLPPRSRKFDVVSCQFAL 155 (331)
T ss_dssp STTCCSH----HHCTSSSTTS-EEEEEEES-G
T ss_pred cccccch----hhhhccccCCCcceeehHHHH
Confidence 8887644 3334443 489999875543
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.009 Score=51.05 Aligned_cols=89 Identities=17% Similarity=0.121 Sum_probs=65.3
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC----------CC-----CCCeeEEeccccchhh
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM----------AP-----IEGVIQVQGDITNART 107 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~----------~~-----~~~v~~i~gDi~~~~~ 107 (179)
.+||=||-|.|++++.+++..+ -.+++.||+.+. .+ .+.++.+.+|....-
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~-------------ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v- 143 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLP-------------VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFL- 143 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCC-------------cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHH-
Confidence 5999999999999999988754 478999999983 01 267777888877642
Q ss_pred HHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHH
Q 030299 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSI 151 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~ 151 (179)
+..+ ++||+|+.|.....+=..+.....-.+.|..+|+
T Consensus 144 -----~~~~-~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~ 181 (282)
T COG0421 144 -----RDCE-EKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALK 181 (282)
T ss_pred -----HhCC-CcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcC
Confidence 2233 4899999999866422255555566777777776
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0087 Score=48.27 Aligned_cols=75 Identities=23% Similarity=0.223 Sum_probs=54.5
Q ss_pred hCCCC----CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------------CCCCeeEEe
Q 030299 36 FNIFE----GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PIEGVIQVQ 99 (179)
Q Consensus 36 ~~ll~----~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------------~~~~v~~i~ 99 (179)
|+++. .|.+||||.||+|.....++.|- ...++.||.+... ...++..+.
T Consensus 34 FNil~~~~i~g~~~LDlFAGSGaLGlEAlSRG--------------A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~ 99 (187)
T COG0742 34 FNILAPDEIEGARVLDLFAGSGALGLEALSRG--------------AARVVFVEKDRKAVKILKENLKALGLEGEARVLR 99 (187)
T ss_pred HHhccccccCCCEEEEecCCccHhHHHHHhCC--------------CceEEEEecCHHHHHHHHHHHHHhCCccceEEEe
Confidence 45554 47899999999999999998884 4789999999831 124677778
Q ss_pred ccccchhhHHHHHhhcCCC-CccEEeeCCCCC
Q 030299 100 GDITNARTAEVVIRHFDGC-KADLVVCDGAPD 130 (179)
Q Consensus 100 gDi~~~~~~~~l~~~~~~~-~~D~VlsD~~~~ 130 (179)
.|.+.. .+..... .||+|+.|.+..
T Consensus 100 ~da~~~------L~~~~~~~~FDlVflDPPy~ 125 (187)
T COG0742 100 NDALRA------LKQLGTREPFDLVFLDPPYA 125 (187)
T ss_pred ecHHHH------HHhcCCCCcccEEEeCCCCc
Confidence 887732 1222322 499999998765
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0014 Score=57.06 Aligned_cols=108 Identities=19% Similarity=0.245 Sum_probs=68.0
Q ss_pred cCCCCchHHHHHHhhCCcchh---hhcHHhHHHHhC--C----CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCC
Q 030299 5 SRDKRDIYYRKAKEEGWRARS---AFKLLQIDEEFN--I----FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSRE 75 (179)
Q Consensus 5 ~~~~~d~y~~~a~~~~~~sRa---a~KL~eid~~~~--l----l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~ 75 (179)
+...+++| ......|+-.|. .+.|-+++..-+ + .++++.++|||||-||=..-.-.. +
T Consensus 73 ~~~Va~HY-N~~~e~g~e~Rq~S~Ii~lRnfNNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kA-g----------- 139 (389)
T KOG1975|consen 73 SSEVAEHY-NERTEVGREKRQRSPIIFLRNFNNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKA-G----------- 139 (389)
T ss_pred hHHHHHHH-HHHHHHhHhhhccCceeehhhhhHHHHHHHHHHHhccccccceeccCCcccHhHhhhh-c-----------
Confidence 44556676 555566664444 355655544322 2 378999999999999976544332 2
Q ss_pred CCCCeEEEEeCCCCC------------C-----CCCeeEEeccccchhhHHHHHhhcCCCCccEEeeCCCC
Q 030299 76 GDLPLIVAIDLQPMA------------P-----IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 76 ~~~~~VvavD~~~~~------------~-----~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
-+.+||+||.... . +-.+.|+.||-+.....+ +.+ +++.+||+|-|--++
T Consensus 140 --I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d-~~e-~~dp~fDivScQF~~ 206 (389)
T KOG1975|consen 140 --IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMD-LLE-FKDPRFDIVSCQFAF 206 (389)
T ss_pred --ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHH-hcc-CCCCCcceeeeeeeE
Confidence 3689999999852 1 124779999988754322 222 245569998775443
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.011 Score=46.63 Aligned_cols=85 Identities=15% Similarity=0.051 Sum_probs=47.0
Q ss_pred hhhhcHHhHHHHh------CCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-------
Q 030299 24 RSAFKLLQIDEEF------NIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------- 90 (179)
Q Consensus 24 Raa~KL~eid~~~------~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------- 90 (179)
.++.-|.+..... ....++.+|||||||.|--+..++...+ ...|+.-|..+..
T Consensus 22 ~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~-------------~~~Vv~TD~~~~l~~l~~Ni 88 (173)
T PF10294_consen 22 PAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFG-------------AARVVLTDYNEVLELLRRNI 88 (173)
T ss_dssp -HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T--------------SEEEEEE-S-HHHHHHHHH
T ss_pred chHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccC-------------CceEEEeccchhhHHHHHHH
Confidence 4555566554442 2345788999999999988888887643 4789999998831
Q ss_pred ------CCCCeeEEeccccchhhHHHHHhhcCCCCccEEee
Q 030299 91 ------PIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVC 125 (179)
Q Consensus 91 ------~~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~Vls 125 (179)
....+.+...|..+... ... +..++||+|++
T Consensus 89 ~~N~~~~~~~v~v~~L~Wg~~~~-~~~---~~~~~~D~Ila 125 (173)
T PF10294_consen 89 ELNGSLLDGRVSVRPLDWGDELD-SDL---LEPHSFDVILA 125 (173)
T ss_dssp HTT--------EEEE--TTS-HH-HHH---HS-SSBSEEEE
T ss_pred HhccccccccccCcEEEecCccc-ccc---cccccCCEEEE
Confidence 11345555666655321 111 23468999986
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0032 Score=55.83 Aligned_cols=80 Identities=26% Similarity=0.336 Sum_probs=60.9
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
.+|..|+|.||+||..|.+++.-+.+ .++|.|+|..+-. ....++.+.+|+....+.
T Consensus 212 ~~g~~v~d~caapg~KTsH~a~i~~n------------~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t~~~ 279 (413)
T KOG2360|consen 212 RPGSRVIDTCAAPGNKTSHLAAIMRN------------QGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNTATP 279 (413)
T ss_pred CCCCceeeeccccccchhhHHHHhhc------------cCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCCCCc
Confidence 45789999999999999999998864 6999999999832 233455557888774321
Q ss_pred HHHHhhcCCCCccEEeeCCCCCCCCCCcc
Q 030299 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDM 137 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~~~~g~~~~ 137 (179)
. .+ +.+..+++|.+|+.+|....
T Consensus 280 ~----~~--~~v~~iL~DpscSgSgm~~r 302 (413)
T KOG2360|consen 280 E----KF--RDVTYILVDPSCSGSGMVSR 302 (413)
T ss_pred c----cc--cceeEEEeCCCCCCCccccc
Confidence 1 12 46899999999999998643
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0031 Score=52.37 Aligned_cols=75 Identities=19% Similarity=0.250 Sum_probs=52.9
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------C---C-CCeeEEeccccchhhH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P---I-EGVIQVQGDITNARTA 108 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------~---~-~~v~~i~gDi~~~~~~ 108 (179)
....|+|.-||-||-+...+.+. +.|+++|+.|.+ . + ..|.|++||+.|.-.-
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~---------------~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~ 158 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQG---------------PYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASK 158 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhC---------------CeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHH
Confidence 34578999999999988887763 689999999952 1 1 3689999999986422
Q ss_pred HHHHhhcCCCCccEEeeCCCCCCCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGAPDVTGL 134 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~~~~g~ 134 (179)
-+ +....+|+|+..+++...+-
T Consensus 159 lq----~~K~~~~~vf~sppwggp~y 180 (263)
T KOG2730|consen 159 LK----ADKIKYDCVFLSPPWGGPSY 180 (263)
T ss_pred Hh----hhhheeeeeecCCCCCCcch
Confidence 11 22345888887766544443
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.004 Score=52.88 Aligned_cols=81 Identities=15% Similarity=0.132 Sum_probs=47.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------C--CCCeeEEeccccchh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P--IEGVIQVQGDITNAR 106 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~--~~~v~~i~gDi~~~~ 106 (179)
.++.+|+|-|||+|+|...+.+++... ........++|+|+.+.. . ..+.....+|....+
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~------~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~ 118 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEK------RNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLEND 118 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTC------HHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSH
T ss_pred cccceeechhhhHHHHHHHHHHhhccc------ccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccc
Confidence 567799999999999998887754100 000014789999999831 1 122346678876654
Q ss_pred hHHHHHhhcCCCCccEEeeCCCCCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGAPDVT 132 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~~~~~ 132 (179)
.. .....||+|+++.++...
T Consensus 119 ~~------~~~~~~D~ii~NPPf~~~ 138 (311)
T PF02384_consen 119 KF------IKNQKFDVIIGNPPFGSK 138 (311)
T ss_dssp SC------TST--EEEEEEE--CTCE
T ss_pred cc------ccccccccccCCCCcccc
Confidence 21 114689999999876655
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0043 Score=56.78 Aligned_cols=52 Identities=19% Similarity=0.424 Sum_probs=43.0
Q ss_pred CCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccc
Q 030299 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITN 104 (179)
Q Consensus 38 ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~ 104 (179)
-+.++..++|+|||+|-++.-+++++ .+|+||+++|-+ .+.|++|++|-..+
T Consensus 380 ~l~~~k~llDv~CGTG~iglala~~~---------------~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 380 GLPADKTLLDVCCGTGTIGLALARGV---------------KRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred CCCCCcEEEEEeecCCceehhhhccc---------------cceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 35778899999999999999998875 589999999942 26789999995554
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0039 Score=52.52 Aligned_cols=74 Identities=16% Similarity=0.118 Sum_probs=60.0
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CCCCeeEEeccccchhhHH
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~~~~v~~i~gDi~~~~~~~ 109 (179)
++||.+||=|||+.|.-..+....+++ .+.|+||+.++.. ..+|+.-|.-|.+-+.-..
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGp------------eG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYR 221 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGP------------EGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYR 221 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCC------------CceEEEEEecccchHHHHHHhhccCCceeeeccCCCchhee
Confidence 589999999999999999999999875 7999999999853 2478888888988764321
Q ss_pred HHHhhcCCCCccEEeeCCCC
Q 030299 110 VVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~~ 129 (179)
+.-.-+|+|++|.++
T Consensus 222 -----mlVgmVDvIFaDvaq 236 (317)
T KOG1596|consen 222 -----MLVGMVDVIFADVAQ 236 (317)
T ss_pred -----eeeeeEEEEeccCCC
Confidence 112369999999875
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.021 Score=47.11 Aligned_cols=72 Identities=19% Similarity=0.205 Sum_probs=53.6
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCC-CeeEEe-ccccchh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQ-GDITNAR 106 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~-~v~~i~-gDi~~~~ 106 (179)
.+..+||+||.+.|.-+.+++..++. +++++.+|++|.. ... .++.+. ||..+.
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~------------~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~- 124 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPD------------DGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV- 124 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCC------------CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH-
Confidence 46789999999999999999999873 6899999999941 232 366666 455442
Q ss_pred hHHHHHhhcCCCCccEEeeCCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
+.+ +..++||+|+.|.+.
T Consensus 125 ----l~~-~~~~~fDliFIDadK 142 (219)
T COG4122 125 ----LSR-LLDGSFDLVFIDADK 142 (219)
T ss_pred ----HHh-ccCCCccEEEEeCCh
Confidence 222 335789999999864
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.011 Score=48.97 Aligned_cols=64 Identities=11% Similarity=0.096 Sum_probs=49.4
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCeeEEeccccchhhHHHH
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~~~v~~i~gDi~~~~~~~~l 111 (179)
..+||||||-|.|...+|++.| +..++||++..- ..++|+..+++|.....
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP-------------~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l----- 111 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNP-------------EKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVL----- 111 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCC-------------CCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHH-----
Confidence 4799999999999999999976 679999999983 23569999999987742
Q ss_pred HhhcC-CCCccEEee
Q 030299 112 IRHFD-GCKADLVVC 125 (179)
Q Consensus 112 ~~~~~-~~~~D~Vls 125 (179)
..+. ++.+|-|..
T Consensus 112 -~~~~~~~sl~~I~i 125 (227)
T COG0220 112 -DYLIPDGSLDKIYI 125 (227)
T ss_pred -HhcCCCCCeeEEEE
Confidence 2333 336766654
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.014 Score=48.97 Aligned_cols=74 Identities=14% Similarity=0.056 Sum_probs=55.1
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------C-CCCeeEEeccccchhhH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQVQGDITNARTA 108 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~-~~~v~~i~gDi~~~~~~ 108 (179)
+..+||+||.+.|.-+.+++..+++ +++|+++|..+.. . ...|+++.||..+ ++
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~------------~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e--~L 144 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPE------------DGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP--VL 144 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCC------------CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHH--HH
Confidence 4569999999999999999988764 6899999999831 2 2468889998765 33
Q ss_pred HHHHhhc-CCCCccEEeeCCC
Q 030299 109 EVVIRHF-DGCKADLVVCDGA 128 (179)
Q Consensus 109 ~~l~~~~-~~~~~D~VlsD~~ 128 (179)
.++.... ..++||+|+.|+.
T Consensus 145 ~~l~~~~~~~~~fD~iFiDad 165 (247)
T PLN02589 145 DQMIEDGKYHGTFDFIFVDAD 165 (247)
T ss_pred HHHHhccccCCcccEEEecCC
Confidence 3333211 1258999999985
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.014 Score=49.93 Aligned_cols=72 Identities=17% Similarity=0.163 Sum_probs=57.9
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------C-CCCeeEEeccccchh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQVQGDITNAR 106 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~-~~~v~~i~gDi~~~~ 106 (179)
++||.+|++-|.|.|+.|-+++..+++ .++++.+|.-... . ..+|.++.-|+...-
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~p------------tGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~G 170 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAP------------TGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSG 170 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCc------------CcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCC
Confidence 389999999999999999999999986 6999999996631 1 357888888887753
Q ss_pred hHHHHHhhcCCCCccEEeeCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
.. ..+..+|.|+.|+.
T Consensus 171 F~------~ks~~aDaVFLDlP 186 (314)
T KOG2915|consen 171 FL------IKSLKADAVFLDLP 186 (314)
T ss_pred cc------ccccccceEEEcCC
Confidence 21 12568999999995
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.005 Score=50.82 Aligned_cols=82 Identities=20% Similarity=0.139 Sum_probs=56.3
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC-CC----------CCCCee-EEeccccchhhHHHH
Q 030299 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP-MA----------PIEGVI-QVQGDITNARTAEVV 111 (179)
Q Consensus 44 ~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~-~~----------~~~~v~-~i~gDi~~~~~~~~l 111 (179)
.||++|||||--=.+.-+. +...|+++|.++ |+ .++++. |+.++..+.+-
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~--------------p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~---- 140 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWK--------------PINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQ---- 140 (252)
T ss_pred ceEEecccCCCCcccccCC--------------CCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcc----
Confidence 5799999999877766443 257999999998 31 256777 88999988752
Q ss_pred HhhcCCCCccEEeeCCC-CCCCCCCcccHHHHHHHHHHHHH
Q 030299 112 IRHFDGCKADLVVCDGA-PDVTGLHDMDEFVQSQLILAVSI 151 (179)
Q Consensus 112 ~~~~~~~~~D~VlsD~~-~~~~g~~~~d~~~q~~L~~~AL~ 151 (179)
+++.++|+|++-.. |++ .|...+++-...-|+
T Consensus 141 ---l~d~s~DtVV~TlvLCSv-----e~~~k~L~e~~rlLR 173 (252)
T KOG4300|consen 141 ---LADGSYDTVVCTLVLCSV-----EDPVKQLNEVRRLLR 173 (252)
T ss_pred ---cccCCeeeEEEEEEEecc-----CCHHHHHHHHHHhcC
Confidence 46789999988653 222 233444555555444
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.012 Score=54.02 Aligned_cols=68 Identities=7% Similarity=0.020 Sum_probs=51.8
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCeeEEeccccchhhHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~~~v~~i~gDi~~~~~~~ 109 (179)
.+..+||||||-|.|+..+|.+.+ +..++|+|+..- ..+.|+.++.+|+..
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p-------------~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~----- 408 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNP-------------DALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDL----- 408 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCC-------------CCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHH-----
Confidence 467899999999999999999976 689999999973 236788877776433
Q ss_pred HHHhhcCCCCccEEeeCC
Q 030299 110 VVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~ 127 (179)
+...+++..+|.|...=
T Consensus 409 -~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 409 -ILNDLPNNSLDGIYILF 425 (506)
T ss_pred -HHHhcCcccccEEEEEC
Confidence 33446767788886643
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.019 Score=49.43 Aligned_cols=93 Identities=19% Similarity=0.217 Sum_probs=63.8
Q ss_pred CCcchhhhcHHhHHHHhCCCC---CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-------
Q 030299 20 GWRARSAFKLLQIDEEFNIFE---GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------- 89 (179)
Q Consensus 20 ~~~sRaa~KL~eid~~~~ll~---~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~------- 89 (179)
|.|.|-..-...|.+...-|. ..-+||||+||+|..-.-+....+. ..-.|.-.|.+|.
T Consensus 111 GIR~Rk~~l~~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~-----------~~~~i~LrDys~~Nv~~g~~ 179 (311)
T PF12147_consen 111 GIRQRKVHLEELIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPE-----------RPDSILLRDYSPINVEKGRA 179 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCC-----------CCceEEEEeCCHHHHHHHHH
Confidence 456666655555555444332 3458999999999987777776552 1257888999995
Q ss_pred ----CCCCCe-eEEeccccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 90 ----APIEGV-IQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 90 ----~~~~~v-~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
..+.++ +|.++|.+|.+....+ +..+++++..|-
T Consensus 180 li~~~gL~~i~~f~~~dAfd~~~l~~l-----~p~P~l~iVsGL 218 (311)
T PF12147_consen 180 LIAERGLEDIARFEQGDAFDRDSLAAL-----DPAPTLAIVSGL 218 (311)
T ss_pred HHHHcCCccceEEEecCCCCHhHhhcc-----CCCCCEEEEecc
Confidence 136676 8999999998764332 346799988764
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.022 Score=49.98 Aligned_cols=89 Identities=16% Similarity=0.063 Sum_probs=62.4
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC-CC----------CCCCeeEEec-cccchh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP-MA----------PIEGVIQVQG-DITNAR 106 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~-~~----------~~~~v~~i~g-Di~~~~ 106 (179)
.++|+.|||==|||||+...+... +.+++|.|+.. |. .+++..+..+ |+++.+
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~---------------G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp 259 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLM---------------GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP 259 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhc---------------CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCC
Confidence 378999999999999999887654 47999999997 21 1244555655 888876
Q ss_pred hHHHHHhhcCCCCccEEeeCCCCCCCCCCcc-cHHHHHHHHHHHHHHH
Q 030299 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDM-DEFVQSQLILAVSIQF 153 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~-d~~~q~~L~~~AL~~~ 153 (179)
+++..||.|+.|.+ .|...- .-....+|+..+|..|
T Consensus 260 --------l~~~~vdaIatDPP---YGrst~~~~~~l~~Ly~~~le~~ 296 (347)
T COG1041 260 --------LRDNSVDAIATDPP---YGRSTKIKGEGLDELYEEALESA 296 (347)
T ss_pred --------CCCCccceEEecCC---CCcccccccccHHHHHHHHHHHH
Confidence 45557999999975 344331 1122466777777644
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.023 Score=46.82 Aligned_cols=61 Identities=15% Similarity=0.125 Sum_probs=35.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCeeEEeccccchhhHHHHHhhcCCCC
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCK 119 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~~~~v~~i~gDi~~~~~~~~l~~~~~~~~ 119 (179)
.++..|.|+|||-+..++-+ +. ...|..+|+....+ . ++.+||.+.+ ++++.
T Consensus 71 ~~~~viaD~GCGdA~la~~~----~~------------~~~V~SfDLva~n~--~--Vtacdia~vP--------L~~~s 122 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAV----PN------------KHKVHSFDLVAPNP--R--VTACDIANVP--------LEDES 122 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH------S---------------EEEEESS-SST--T--EEES-TTS-S----------TT-
T ss_pred CCCEEEEECCCchHHHHHhc----cc------------CceEEEeeccCCCC--C--EEEecCccCc--------CCCCc
Confidence 34679999999999877443 31 35799999988653 3 5689998876 46789
Q ss_pred ccEEeeCCC
Q 030299 120 ADLVVCDGA 128 (179)
Q Consensus 120 ~D~VlsD~~ 128 (179)
+|+++...+
T Consensus 123 vDv~VfcLS 131 (219)
T PF05148_consen 123 VDVAVFCLS 131 (219)
T ss_dssp EEEEEEES-
T ss_pred eeEEEEEhh
Confidence 999988664
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.017 Score=43.80 Aligned_cols=41 Identities=24% Similarity=0.232 Sum_probs=32.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~ 89 (179)
.+..+|+|+|||-|..+..++..++.. .....|+|+|.++.
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~---------~~~~~v~~iD~~~~ 64 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNS---------SPNLRVLGIDCNES 64 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhc---------CCCCeEEEEECCcH
Confidence 567899999999999999999944210 12579999999983
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.036 Score=48.49 Aligned_cols=68 Identities=18% Similarity=0.137 Sum_probs=51.3
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC--------CC-------CCCeeEEeccccch
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM--------AP-------IEGVIQVQGDITNA 105 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~--------~~-------~~~v~~i~gDi~~~ 105 (179)
...+||.||+|.|+...++++..+ ..+|+.||+.+. .+ -++++.+.+|....
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~-------------~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~ 169 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKT-------------VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAE 169 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCC-------------CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHH
Confidence 457999999999999998877533 368999999993 01 25788889998874
Q ss_pred hhHHHHHhhcCCCCccEEeeCCC
Q 030299 106 RTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 106 ~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
- +. .+++||+|+.|..
T Consensus 170 L------~~-~~~~yDvIi~D~~ 185 (336)
T PLN02823 170 L------EK-RDEKFDVIIGDLA 185 (336)
T ss_pred H------hh-CCCCccEEEecCC
Confidence 2 11 2468999999974
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.039 Score=45.95 Aligned_cols=74 Identities=16% Similarity=0.172 Sum_probs=58.1
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------C-CCCeeEEeccccchhhH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQVQGDITNARTA 108 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~-~~~v~~i~gDi~~~~~~ 108 (179)
...++||||.=+|.-+...+..++. +++|+++|+.+-. . -..+++++|+..+ .+
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~------------dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~e--sL 138 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPE------------DGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALE--SL 138 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCC------------CceEEEEecChHHHHHhHHHHHhccccceeeeeecchhh--hH
Confidence 4569999999999999888888875 8999999999831 1 2357788887654 55
Q ss_pred HHHHhhcCCCCccEEeeCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~ 128 (179)
.++.+..+...||.++.|..
T Consensus 139 d~l~~~~~~~tfDfaFvDad 158 (237)
T KOG1663|consen 139 DELLADGESGTFDFAFVDAD 158 (237)
T ss_pred HHHHhcCCCCceeEEEEccc
Confidence 66777666778999999963
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.0066 Score=50.86 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=34.0
Q ss_pred hcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC
Q 030299 27 FKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (179)
Q Consensus 27 ~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~ 88 (179)
.+|.|+..+.+. .+=+++||||||||-..+-+..+. -++.|||+|.
T Consensus 112 ~~l~emI~~~~~-g~F~~~lDLGCGTGL~G~~lR~~a---------------~~ltGvDiS~ 157 (287)
T COG4976 112 ELLAEMIGKADL-GPFRRMLDLGCGTGLTGEALRDMA---------------DRLTGVDISE 157 (287)
T ss_pred HHHHHHHHhccC-CccceeeecccCcCcccHhHHHHH---------------hhccCCchhH
Confidence 344444444332 233789999999999999998875 4799999998
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.1 Score=45.42 Aligned_cols=105 Identities=11% Similarity=0.066 Sum_probs=64.5
Q ss_pred CcchhhhcHHhH--HHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------
Q 030299 21 WRARSAFKLLQI--DEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM--------- 89 (179)
Q Consensus 21 ~~sRaa~KL~ei--d~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~--------- 89 (179)
|+.|.-..|++- .+.-..+.++..++|||||.|..+..|++.+... ......+++|+|.-
T Consensus 54 Yptr~E~~iL~~~~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~---------~~~~~Y~plDIS~~~L~~a~~~L 124 (319)
T TIGR03439 54 YLTNDEIEILKKHSSDIAASIPSGSMLVELGSGNLRKVGILLEALERQ---------KKSVDYYALDVSRSELQRTLAEL 124 (319)
T ss_pred CChHHHHHHHHHHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhc---------CCCceEEEEECCHHHHHHHHHhh
Confidence 566666666542 2333446778899999999999999998877420 11357999999972
Q ss_pred --CCCCCeeE--EeccccchhhHHHHHhhcCCCCccEEeeCCCCCCCCCCccc
Q 030299 90 --APIEGVIQ--VQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMD 138 (179)
Q Consensus 90 --~~~~~v~~--i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d 138 (179)
..+|++.+ +.||.++... .+.+........+++.=|+ +-|+..++
T Consensus 125 ~~~~~p~l~v~~l~gdy~~~l~--~l~~~~~~~~~r~~~flGS--siGNf~~~ 173 (319)
T TIGR03439 125 PLGNFSHVRCAGLLGTYDDGLA--WLKRPENRSRPTTILWLGS--SIGNFSRP 173 (319)
T ss_pred hhccCCCeEEEEEEecHHHHHh--hcccccccCCccEEEEeCc--cccCCCHH
Confidence 13466655 7899988531 0111001123577777663 34444444
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.044 Score=47.50 Aligned_cols=85 Identities=21% Similarity=0.207 Sum_probs=54.0
Q ss_pred HhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------C-CCCeeEEe
Q 030299 30 LQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-IEGVIQVQ 99 (179)
Q Consensus 30 ~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~-~~~v~~i~ 99 (179)
.|+.+-+. .+++..++|.=.|-||.|..++++.+ .++|+|+|..|.. + -.++.+++
T Consensus 10 ~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~-------------~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~ 75 (310)
T PF01795_consen 10 KEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLP-------------NGRLIGIDRDPEALERAKERLKKFDDRFIFIH 75 (310)
T ss_dssp HHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-T-------------T-EEEEEES-HHHHHHHHCCTCCCCTTEEEEE
T ss_pred HHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCC-------------CCeEEEecCCHHHHHHHHHHHhhccceEEEEe
Confidence 34444444 36778999999999999999999986 4899999999841 1 24799999
Q ss_pred ccccchhhHHHHHhhc-CCCCccEEeeCCCCCC
Q 030299 100 GDITNARTAEVVIRHF-DGCKADLVVCDGAPDV 131 (179)
Q Consensus 100 gDi~~~~~~~~l~~~~-~~~~~D~VlsD~~~~~ 131 (179)
+++.+... ..... ...++|-|+.|.+.+.
T Consensus 76 ~~F~~l~~---~l~~~~~~~~~dgiL~DLGvSS 105 (310)
T PF01795_consen 76 GNFSNLDE---YLKELNGINKVDGILFDLGVSS 105 (310)
T ss_dssp S-GGGHHH---HHHHTTTTS-EEEEEEE-S--H
T ss_pred ccHHHHHH---HHHHccCCCccCEEEEccccCH
Confidence 99888653 22223 3458999999986554
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.016 Score=50.82 Aligned_cols=70 Identities=27% Similarity=0.407 Sum_probs=54.5
Q ss_pred CCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCC-eeEEeccccch
Q 030299 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEG-VIQVQGDITNA 105 (179)
Q Consensus 38 ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~-v~~i~gDi~~~ 105 (179)
...+|.+|+|+=||-|-||..++.... ..|+|+|++|-. ...+ ++.++||.+..
T Consensus 185 ~v~~GE~V~DmFAGVGpfsi~~Ak~g~--------------~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev 250 (341)
T COG2520 185 LVKEGETVLDMFAGVGPFSIPIAKKGR--------------PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREV 250 (341)
T ss_pred hhcCCCEEEEccCCcccchhhhhhcCC--------------ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHh
Confidence 346799999999999999999988743 459999999942 2345 88899999886
Q ss_pred hhHHHHHhhcCCCCccEEeeCCCC
Q 030299 106 RTAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 106 ~~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
... + +.+|.|+.....
T Consensus 251 ~~~------~--~~aDrIim~~p~ 266 (341)
T COG2520 251 APE------L--GVADRIIMGLPK 266 (341)
T ss_pred hhc------c--ccCCEEEeCCCC
Confidence 421 1 579999987754
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.017 Score=48.91 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=28.4
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~ 88 (179)
..++||||||-|+.|..++... .+|.|.+.|+
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~f---------------~~v~aTE~S~ 126 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPLF---------------KEVYATEASP 126 (265)
T ss_pred CCceEEecCCCcHHHHHHHhhc---------------ceEEeecCCH
Confidence 4579999999999999998876 4699999998
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.021 Score=47.96 Aligned_cols=67 Identities=15% Similarity=0.111 Sum_probs=48.1
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHHHHHh
Q 030299 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 44 ~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
+||++|||-|.-.--+.+..+. +.-.|.|+|.+|-+ ....+.....|++..+ +..
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n-----------~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~----~~~ 138 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPN-----------NRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPS----LKE 138 (264)
T ss_pred hheeeccCCCcccchhhhcCCC-----------CCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchh----ccC
Confidence 8999999999998888887652 24789999999942 1234555567777765 333
Q ss_pred hcCCCCccEEee
Q 030299 114 HFDGCKADLVVC 125 (179)
Q Consensus 114 ~~~~~~~D~Vls 125 (179)
....+.+|.|.+
T Consensus 139 ~~~~~svD~it~ 150 (264)
T KOG2361|consen 139 PPEEGSVDIITL 150 (264)
T ss_pred CCCcCccceEEE
Confidence 455678888754
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.036 Score=49.15 Aligned_cols=66 Identities=18% Similarity=0.167 Sum_probs=49.5
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhHHHH
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~~~l 111 (179)
-+|||+.||+|..+..++.+.+. ...|+++|++|.. ...+++++++|....-.
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~g------------a~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~---- 109 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEG------------VREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLR---- 109 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCC------------CCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHH----
Confidence 58999999999999999887521 3689999999942 23467788888776421
Q ss_pred HhhcCCCCccEEeeCC
Q 030299 112 IRHFDGCKADLVVCDG 127 (179)
Q Consensus 112 ~~~~~~~~~D~VlsD~ 127 (179)
.. ..+||+|..|.
T Consensus 110 --~~-~~~fDvIdlDP 122 (374)
T TIGR00308 110 --YR-NRKFHVIDIDP 122 (374)
T ss_pred --Hh-CCCCCEEEeCC
Confidence 11 24799999987
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.0087 Score=42.70 Aligned_cols=67 Identities=21% Similarity=0.200 Sum_probs=24.5
Q ss_pred EEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---C-------C-CCCeeEEeccccchhhHHHHHhh
Q 030299 46 VDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---A-------P-IEGVIQVQGDITNARTAEVVIRH 114 (179)
Q Consensus 46 lDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---~-------~-~~~v~~i~gDi~~~~~~~~l~~~ 114 (179)
|++|+..|..|.++++.+... ..++++++|..+. . . ..+++++++|..+. ..+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~----------~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~--l~~---- 64 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDN----------GRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDF--LPS---- 64 (106)
T ss_dssp ------------------------------------EEEESS------------GGG-BTEEEEES-THHH--HHH----
T ss_pred Ccccccccccccccccccccc----------ccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHH--HHH----
Confidence 689999999999998876531 1248999999992 1 1 24688999998653 222
Q ss_pred cCCCCccEEeeCCC
Q 030299 115 FDGCKADLVVCDGA 128 (179)
Q Consensus 115 ~~~~~~D~VlsD~~ 128 (179)
+..+++|+++.|+.
T Consensus 65 ~~~~~~dli~iDg~ 78 (106)
T PF13578_consen 65 LPDGPIDLIFIDGD 78 (106)
T ss_dssp HHH--EEEEEEES-
T ss_pred cCCCCEEEEEECCC
Confidence 23468999999985
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.059 Score=45.37 Aligned_cols=70 Identities=19% Similarity=0.142 Sum_probs=51.2
Q ss_pred CCCC--EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------C----------C-CCeeE
Q 030299 40 EGVK--RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P----------I-EGVIQ 97 (179)
Q Consensus 40 ~~g~--~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~----------~-~~v~~ 97 (179)
++|. +|||+-||.|.-+..++.+ ++.|+++|-+|.. . + .+++.
T Consensus 85 k~g~~p~VLD~TAGlG~Da~~las~---------------G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l 149 (250)
T PRK10742 85 KGDYLPDVVDATAGLGRDAFVLASV---------------GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQL 149 (250)
T ss_pred CCCCCCEEEECCCCccHHHHHHHHc---------------CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEE
Confidence 5666 8999999999999999987 3679999999941 1 1 24556
Q ss_pred EeccccchhhHHHHHhhcCCCCccEEeeCCCCCC
Q 030299 98 VQGDITNARTAEVVIRHFDGCKADLVVCDGAPDV 131 (179)
Q Consensus 98 i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~ 131 (179)
+++|..+.- +... ..||+|..|..+..
T Consensus 150 ~~~da~~~L------~~~~-~~fDVVYlDPMfp~ 176 (250)
T PRK10742 150 IHASSLTAL------TDIT-PRPQVVYLDPMFPH 176 (250)
T ss_pred EeCcHHHHH------hhCC-CCCcEEEECCCCCC
Confidence 666665532 2233 37999999997655
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.084 Score=42.32 Aligned_cols=68 Identities=12% Similarity=0.074 Sum_probs=49.4
Q ss_pred CCCCC-EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchh
Q 030299 39 FEGVK-RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNAR 106 (179)
Q Consensus 39 l~~g~-~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~ 106 (179)
+.... +++|+|+|.|-=...++-..| +..|+-+|...-+ .++|++++.+.+.+..
T Consensus 45 ~~~~~~~~lDiGSGaGfPGipLaI~~p-------------~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~ 111 (184)
T PF02527_consen 45 LPDFGKKVLDIGSGAGFPGIPLAIARP-------------DLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPE 111 (184)
T ss_dssp S-CCCSEEEEETSTTTTTHHHHHHH-T-------------TSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTT
T ss_pred hccCCceEEecCCCCCChhHHHHHhCC-------------CCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccc
Confidence 44433 899999999988888877765 6889999988732 4689999999998821
Q ss_pred hHHHHHhhcCCCCccEEeeCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
....||+|++-+-
T Consensus 112 ---------~~~~fd~v~aRAv 124 (184)
T PF02527_consen 112 ---------YRESFDVVTARAV 124 (184)
T ss_dssp ---------TTT-EEEEEEESS
T ss_pred ---------cCCCccEEEeehh
Confidence 3468999999763
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.16 Score=43.96 Aligned_cols=77 Identities=22% Similarity=0.209 Sum_probs=59.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------C-CCCeeEEeccccchhhHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-IEGVIQVQGDITNARTAE 109 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~-~~~v~~i~gDi~~~~~~~ 109 (179)
+++...+|.=-|-||.|+.++++.+. .++++|+|..|.. + -.++.++++++.+...
T Consensus 22 ~~~giyiD~TlG~GGHS~~iL~~l~~------------~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~-- 87 (314)
T COG0275 22 KPDGIYIDGTLGAGGHSRAILEKLPD------------LGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAE-- 87 (314)
T ss_pred CCCcEEEEecCCCcHhHHHHHHhCCC------------CCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHH--
Confidence 56789999999999999999999874 6889999999831 2 2479999998877543
Q ss_pred HHHhhcCCCCccEEeeCCCCCC
Q 030299 110 VVIRHFDGCKADLVVCDGAPDV 131 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~~~~ 131 (179)
.....+..+||-|+.|.+.+.
T Consensus 88 -~l~~~~i~~vDGiL~DLGVSS 108 (314)
T COG0275 88 -ALKELGIGKVDGILLDLGVSS 108 (314)
T ss_pred -HHHhcCCCceeEEEEeccCCc
Confidence 222334468999999986544
|
|
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.13 Score=43.40 Aligned_cols=70 Identities=17% Similarity=0.109 Sum_probs=52.4
Q ss_pred HHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------CC---CCeeE
Q 030299 29 LLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PI---EGVIQ 97 (179)
Q Consensus 29 L~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------~~---~~v~~ 97 (179)
|++..++.+++++...++|+|||.|..|.++++..... ..+...++.||-.... .. +.++-
T Consensus 6 li~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~--------~~~~~~~~lIDR~~~R~K~D~~~~~~~~~~~~~R 77 (259)
T PF05206_consen 6 LIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQED--------KPSNSRFVLIDRASNRHKADNKIRKDESEPKFER 77 (259)
T ss_pred HHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhc--------ccCCccEEEEecCcccccchhhhhccCCCCceEE
Confidence 67777888999999999999999999999999987420 1124678888886531 01 34677
Q ss_pred Eeccccchh
Q 030299 98 VQGDITNAR 106 (179)
Q Consensus 98 i~gDi~~~~ 106 (179)
++.||.|..
T Consensus 78 ~riDI~dl~ 86 (259)
T PF05206_consen 78 LRIDIKDLD 86 (259)
T ss_pred EEEEeeccc
Confidence 788888875
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.11 Score=42.72 Aligned_cols=65 Identities=20% Similarity=0.148 Sum_probs=49.9
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~~~ 110 (179)
+.+++|||+|+|-=...++-..+ +..|+=+|...-+ .++|++++++.+.+...
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p-------------~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~--- 131 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFP-------------DLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQ--- 131 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhcc-------------CCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhccc---
Confidence 58999999999988888774444 5678889987732 47899999999988642
Q ss_pred HHhhcCCCC-ccEEeeCCC
Q 030299 111 VIRHFDGCK-ADLVVCDGA 128 (179)
Q Consensus 111 l~~~~~~~~-~D~VlsD~~ 128 (179)
+.+ ||+|+|-+-
T Consensus 132 ------~~~~~D~vtsRAv 144 (215)
T COG0357 132 ------EKKQYDVVTSRAV 144 (215)
T ss_pred ------ccccCcEEEeehc
Confidence 223 999999763
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.076 Score=44.28 Aligned_cols=113 Identities=16% Similarity=0.098 Sum_probs=68.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------------CCCCeeEEeccccc
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------PIEGVIQVQGDITN 104 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------------~~~~v~~i~gDi~~ 104 (179)
.+..+||=||.|.|+.+..+.+.-+ ...|+.||+.|.- .-++++.+.+|...
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~-------------~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~ 141 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPP-------------VESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRK 141 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT--------------SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHH
T ss_pred CCcCceEEEcCCChhhhhhhhhcCC-------------cceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHH
Confidence 3578999999999999998876432 3689999999941 13578889999877
Q ss_pred hhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHHH---H------------HHHHHHHHHHHhhceE
Q 030299 105 ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSIQ---F------------FIYELVFCLRQLLQYV 169 (179)
Q Consensus 105 ~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~~---~------------~~~~~~~~~~~~f~~v 169 (179)
.- +...+++||+|+.|..-+.+-....=...-.+++...|+- + .+..+.=.|++.|..|
T Consensus 142 ~l------~~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v 215 (246)
T PF01564_consen 142 FL------KETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFPQV 215 (246)
T ss_dssp HH------HTSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEE
T ss_pred HH------HhccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCCce
Confidence 42 2223238999999986433222221122334555555541 0 1223334567788866
Q ss_pred EE
Q 030299 170 IL 171 (179)
Q Consensus 170 ~~ 171 (179)
..
T Consensus 216 ~~ 217 (246)
T PF01564_consen 216 KP 217 (246)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.061 Score=45.53 Aligned_cols=47 Identities=19% Similarity=0.265 Sum_probs=31.9
Q ss_pred HHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC
Q 030299 29 LLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (179)
Q Consensus 29 L~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~ 88 (179)
|.|+..+..-++ ..+|||+|||||.-+-.+.+.++. ...++++|.++
T Consensus 22 l~El~~r~p~f~-P~~vLD~GsGpGta~wAa~~~~~~------------~~~~~~vd~s~ 68 (274)
T PF09243_consen 22 LSELRKRLPDFR-PRSVLDFGSGPGTALWAAREVWPS------------LKEYTCVDRSP 68 (274)
T ss_pred HHHHHHhCcCCC-CceEEEecCChHHHHHHHHHHhcC------------ceeeeeecCCH
Confidence 345544432223 458999999999876655555542 46799999998
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.073 Score=45.44 Aligned_cols=57 Identities=12% Similarity=0.103 Sum_probs=43.3
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCeeEEeccccchhhHHHHHhhcCCCCcc
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKAD 121 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D 121 (179)
...|.|+|||-+-.++ .. ...|+++|+.+..+ .++.+||++.+ +.++++|
T Consensus 181 ~~vIaD~GCGEakiA~----~~--------------~~kV~SfDL~a~~~----~V~~cDm~~vP--------l~d~svD 230 (325)
T KOG3045|consen 181 NIVIADFGCGEAKIAS----SE--------------RHKVHSFDLVAVNE----RVIACDMRNVP--------LEDESVD 230 (325)
T ss_pred ceEEEecccchhhhhh----cc--------------ccceeeeeeecCCC----ceeeccccCCc--------CccCccc
Confidence 4578999999987655 22 36799999987543 35689999976 5678999
Q ss_pred EEeeCCC
Q 030299 122 LVVCDGA 128 (179)
Q Consensus 122 ~VlsD~~ 128 (179)
+++...+
T Consensus 231 vaV~CLS 237 (325)
T KOG3045|consen 231 VAVFCLS 237 (325)
T ss_pred EEEeeHh
Confidence 9987654
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.07 Score=43.65 Aligned_cols=60 Identities=25% Similarity=0.318 Sum_probs=41.8
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--C------CC--CeeEEeccccchhhHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--P------IE--GVIQVQGDITNARTAEV 110 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--~------~~--~v~~i~gDi~~~~~~~~ 110 (179)
.|.+|||+|+|+|--+...+... ...|++.|+-|.. . .. ++.++..|+..
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aG--------------A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g------ 138 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAG--------------AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG------ 138 (218)
T ss_pred ccceeeecccccChHHHHHHHhh--------------hHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC------
Confidence 47899999999998887776653 3689999998831 1 12 34445555544
Q ss_pred HHhhcCCCCccEEee
Q 030299 111 VIRHFDGCKADLVVC 125 (179)
Q Consensus 111 l~~~~~~~~~D~Vls 125 (179)
.+..+|+|+.
T Consensus 139 -----~~~~~Dl~La 148 (218)
T COG3897 139 -----SPPAFDLLLA 148 (218)
T ss_pred -----CCcceeEEEe
Confidence 2357999886
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.23 Score=47.45 Aligned_cols=86 Identities=9% Similarity=0.038 Sum_probs=54.5
Q ss_pred CCCCCCCEEEEEccCCChHHHHHHHHhC---CCC-C-CCC-C--------------------CC---CCCCCeEEEEeCC
Q 030299 37 NIFEGVKRVVDLCAAPGSWSQVLSRKLY---LPA-K-LSP-D--------------------SR---EGDLPLIVAIDLQ 87 (179)
Q Consensus 37 ~ll~~g~~VlDLgagpGg~s~~l~~~~~---~~~-~-~~~-~--------------------~~---~~~~~~VvavD~~ 87 (179)
+..+++..++|-+||.|.+...++.... +.. . .++ . .+ .....+|+|+|++
T Consensus 186 ~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did 265 (702)
T PRK11783 186 GWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDID 265 (702)
T ss_pred CCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECC
Confidence 3335688999999999999988876532 110 0 011 0 00 0123479999999
Q ss_pred CCC-----------CCC-CeeEEeccccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 88 PMA-----------PIE-GVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 88 ~~~-----------~~~-~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
+.. .+. .+.+.++|+++.... ...+.+|+|++|.+
T Consensus 266 ~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~------~~~~~~d~IvtNPP 312 (702)
T PRK11783 266 PRVIQAARKNARRAGVAELITFEVKDVADLKNP------LPKGPTGLVISNPP 312 (702)
T ss_pred HHHHHHHHHHHHHcCCCcceEEEeCChhhcccc------cccCCCCEEEECCC
Confidence 831 233 377889999886421 12246999999954
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.043 Score=46.15 Aligned_cols=93 Identities=14% Similarity=0.065 Sum_probs=61.1
Q ss_pred HHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC-CC------CCCCeeE--Eecccc
Q 030299 33 DEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP-MA------PIEGVIQ--VQGDIT 103 (179)
Q Consensus 33 d~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~-~~------~~~~v~~--i~gDi~ 103 (179)
|+.|++-+.-..++||||+-|..+.++..+. -.+++-+|.+- |. .-|+++. ..+|=.
T Consensus 64 DrvfD~kk~fp~a~diGcs~G~v~rhl~~e~--------------vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE 129 (325)
T KOG2940|consen 64 DRVFDCKKSFPTAFDIGCSLGAVKRHLRGEG--------------VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEE 129 (325)
T ss_pred HHHHHHhhhCcceeecccchhhhhHHHHhcc--------------hhheeeeecchHHHHHhhccCCCceEEEEEecchh
Confidence 3445544455689999999999999987653 36899999986 31 1244433 345533
Q ss_pred chhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHH
Q 030299 104 NARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSI 151 (179)
Q Consensus 104 ~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~ 151 (179)
..+ |.+.++|+|++.++ -+|..|-..+..-|..+|+
T Consensus 130 ~Ld--------f~ens~DLiisSls----lHW~NdLPg~m~~ck~~lK 165 (325)
T KOG2940|consen 130 FLD--------FKENSVDLIISSLS----LHWTNDLPGSMIQCKLALK 165 (325)
T ss_pred ccc--------ccccchhhhhhhhh----hhhhccCchHHHHHHHhcC
Confidence 332 56789999999764 5887775555555544443
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.075 Score=44.89 Aligned_cols=66 Identities=24% Similarity=0.320 Sum_probs=47.2
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CCCCeeEEeccccchhhHHHHHhhcCC
Q 030299 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRHFDG 117 (179)
Q Consensus 44 ~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~~~v~~i~gDi~~~~~~~~l~~~~~~ 117 (179)
+|+||.||.||.+.-+.+. + --.|.++|+.+.. ..++. .+.+||.+....+ + .
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G-------------~~~v~a~e~~~~a~~~~~~N~~~~-~~~~Di~~~~~~~-----~-~ 60 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-G-------------FEIVAANEIDKSAAETYEANFPNK-LIEGDITKIDEKD-----F-I 60 (275)
T ss_pred cEEEEccCcchHHHHHHHc-C-------------CEEEEEEeCCHHHHHHHHHhCCCC-CccCccccCchhh-----c-C
Confidence 6999999999999888654 3 2468999999842 23333 6789998865321 1 2
Q ss_pred CCccEEeeCCCCC
Q 030299 118 CKADLVVCDGAPD 130 (179)
Q Consensus 118 ~~~D~VlsD~~~~ 130 (179)
..+|+|+.+-+|.
T Consensus 61 ~~~D~l~~gpPCq 73 (275)
T cd00315 61 PDIDLLTGGFPCQ 73 (275)
T ss_pred CCCCEEEeCCCCh
Confidence 4699999887654
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.068 Score=45.13 Aligned_cols=44 Identities=18% Similarity=0.391 Sum_probs=35.8
Q ss_pred HHHHhCCCC----CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC
Q 030299 32 IDEEFNIFE----GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (179)
Q Consensus 32 id~~~~ll~----~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~ 88 (179)
.|.+...|+ .+..+||+||-.|-.|..+++.+++ ..|+|+||.+
T Consensus 45 ~D~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~-------------r~iLGvDID~ 92 (288)
T KOG2899|consen 45 SDPRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGP-------------RRILGVDIDP 92 (288)
T ss_pred CChhhhhccccccCcceeEeccCCcchhHHHHHHhhcc-------------ceeeEeeccH
Confidence 345555553 3568999999999999999999974 5799999998
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.19 Score=41.60 Aligned_cols=72 Identities=13% Similarity=0.102 Sum_probs=51.5
Q ss_pred CCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------------------CCCCe
Q 030299 37 NIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------------PIEGV 95 (179)
Q Consensus 37 ~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------------------~~~~v 95 (179)
..|+||..+||+|.|+|..|..++..++.+ ...++|||.-|.- ....+
T Consensus 78 ~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~-----------g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l 146 (237)
T KOG1661|consen 78 DHLQPGASFLDVGSGSGYLTACFARMVGAT-----------GGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGEL 146 (237)
T ss_pred HhhccCcceeecCCCccHHHHHHHHHhcCC-----------CccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCce
Confidence 457899999999999999999999888742 3334899887720 01356
Q ss_pred eEEeccccchhhHHHHHhhcCCCCccEEeeCC
Q 030299 96 IQVQGDITNARTAEVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 96 ~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~ 127 (179)
.++.||...... ...+||.|.+-+
T Consensus 147 ~ivvGDgr~g~~--------e~a~YDaIhvGA 170 (237)
T KOG1661|consen 147 SIVVGDGRKGYA--------EQAPYDAIHVGA 170 (237)
T ss_pred EEEeCCccccCC--------ccCCcceEEEcc
Confidence 677788776542 245789887753
|
|
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.19 Score=37.74 Aligned_cols=65 Identities=25% Similarity=0.203 Sum_probs=45.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCeeEEeccccchhhHHHHHhhcCCCC
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCK 119 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~~~~v~~i~gDi~~~~~~~~l~~~~~~~~ 119 (179)
++| +|+++|.| -++.++. ++.. .+..|+++|+.+-....|+.++..|+|+++.. + -+.
T Consensus 13 ~~g-kVvEVGiG--~~~~VA~-~L~e-----------~g~dv~atDI~~~~a~~g~~~v~DDitnP~~~--i-----Y~~ 70 (129)
T COG1255 13 ARG-KVVEVGIG--FFLDVAK-RLAE-----------RGFDVLATDINEKTAPEGLRFVVDDITNPNIS--I-----YEG 70 (129)
T ss_pred cCC-cEEEEccc--hHHHHHH-HHHH-----------cCCcEEEEecccccCcccceEEEccCCCccHH--H-----hhC
Confidence 344 99999875 4555443 3321 14789999999975458999999999998631 1 135
Q ss_pred ccEEeeC
Q 030299 120 ADLVVCD 126 (179)
Q Consensus 120 ~D~VlsD 126 (179)
.|+|-|=
T Consensus 71 A~lIYSi 77 (129)
T COG1255 71 ADLIYSI 77 (129)
T ss_pred ccceeec
Confidence 7888774
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.90 E-value=1.7 Score=35.48 Aligned_cols=80 Identities=19% Similarity=0.233 Sum_probs=54.2
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC--CCCCCeeEEeccccchhhHHHHHhhcC--C
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM--APIEGVIQVQGDITNARTAEVVIRHFD--G 117 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~--~~~~~v~~i~gDi~~~~~~~~l~~~~~--~ 117 (179)
+.+|+=.|| +|+....+++++.. .+..|++++.++. .+..++.++++|+++.+..+++.+... -
T Consensus 4 ~~~vlVtGa-sg~iG~~~a~~l~~-----------~g~~V~~~~r~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 71 (270)
T PRK06179 4 SKVALVTGA-SSGIGRATAEKLAR-----------AGYRVFGTSRNPARAAPIPGVELLELDVTDDASVQAAVDEVIARA 71 (270)
T ss_pred CCEEEEecC-CCHHHHHHHHHHHH-----------CCCEEEEEeCChhhccccCCCeeEEeecCCHHHHHHHHHHHHHhC
Confidence 456777775 56677777666542 2568998887753 334688899999999876655554321 2
Q ss_pred CCccEEeeCCCCCCCC
Q 030299 118 CKADLVVCDGAPDVTG 133 (179)
Q Consensus 118 ~~~D~VlsD~~~~~~g 133 (179)
+.+|+|++..+....+
T Consensus 72 g~~d~li~~ag~~~~~ 87 (270)
T PRK06179 72 GRIDVLVNNAGVGLAG 87 (270)
T ss_pred CCCCEEEECCCCCCCc
Confidence 3689999988764433
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=92.69 E-value=1.7 Score=38.43 Aligned_cols=77 Identities=23% Similarity=0.169 Sum_probs=53.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------------CCCCeeEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PIEGVIQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------------~~~~v~~i~gDi~~~~~ 107 (179)
..+.+||=.| |+|..-..+++.+-. .+..|++++..+.. ..++++++++|+++.+.
T Consensus 58 ~~~~kVLVtG-atG~IG~~l~~~Ll~-----------~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 125 (390)
T PLN02657 58 PKDVTVLVVG-ATGYIGKFVVRELVR-----------RGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADS 125 (390)
T ss_pred CCCCEEEEEC-CCcHHHHHHHHHHHH-----------CCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHH
Confidence 3467898888 577777777666532 14688888876521 13578999999999887
Q ss_pred HHHHHhhcCCCCccEEeeCCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
..++.+... .++|+|++..++
T Consensus 126 l~~~~~~~~-~~~D~Vi~~aa~ 146 (390)
T PLN02657 126 LRKVLFSEG-DPVDVVVSCLAS 146 (390)
T ss_pred HHHHHHHhC-CCCcEEEECCcc
Confidence 666654321 269999987654
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.23 Score=42.24 Aligned_cols=74 Identities=14% Similarity=0.148 Sum_probs=39.5
Q ss_pred CEEEEEccCC--ChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CCCC--eeEEeccccchhhHH
Q 030299 43 KRVVDLCAAP--GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEG--VIQVQGDITNARTAE 109 (179)
Q Consensus 43 ~~VlDLgagp--Gg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~~~~--v~~i~gDi~~~~~~~ 109 (179)
+.+||||||- -+.+-.++++..+ +++|+=||..|+. .-++ ..++++|+++++.+-
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P------------~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL 137 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAP------------DARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAIL 137 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-T------------T-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHH
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCC------------CceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHh
Confidence 6899999993 2344455566653 7999999999951 2345 789999999987421
Q ss_pred ---HHHhhcC-CCCccEEeeCCC
Q 030299 110 ---VVIRHFD-GCKADLVVCDGA 128 (179)
Q Consensus 110 ---~l~~~~~-~~~~D~VlsD~~ 128 (179)
++...+. ++++-+++...-
T Consensus 138 ~~p~~~~~lD~~rPVavll~~vL 160 (267)
T PF04672_consen 138 AHPEVRGLLDFDRPVAVLLVAVL 160 (267)
T ss_dssp CSHHHHCC--TTS--EEEECT-G
T ss_pred cCHHHHhcCCCCCCeeeeeeeee
Confidence 2222222 567777777553
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.89 E-value=1.1 Score=35.55 Aligned_cols=74 Identities=15% Similarity=0.166 Sum_probs=52.1
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----CCCCeeEEeccccchhhHHHHHhhcCCC
Q 030299 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----PIEGVIQVQGDITNARTAEVVIRHFDGC 118 (179)
Q Consensus 44 ~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----~~~~v~~i~gDi~~~~~~~~l~~~~~~~ 118 (179)
+|+=.|+ .|+....+++++.. .+..|++++.++.. ...++.+..+|+.+.+..+++.+.+.++
T Consensus 3 ~vlItG~-sg~iG~~la~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~ 70 (225)
T PRK08177 3 TALIIGA-SRGLGLGLVDRLLE-----------RGWQVTATVRGPQQDTALQALPGVHIEKLDMNDPASLDQLLQRLQGQ 70 (225)
T ss_pred EEEEeCC-CchHHHHHHHHHHh-----------CCCEEEEEeCCCcchHHHHhccccceEEcCCCCHHHHHHHHHHhhcC
Confidence 4555565 46666666665542 14689999988743 2346778899999998877777776656
Q ss_pred CccEEeeCCCC
Q 030299 119 KADLVVCDGAP 129 (179)
Q Consensus 119 ~~D~VlsD~~~ 129 (179)
.+|+|++..+.
T Consensus 71 ~id~vi~~ag~ 81 (225)
T PRK08177 71 RFDLLFVNAGI 81 (225)
T ss_pred CCCEEEEcCcc
Confidence 89999998654
|
|
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=91.82 E-value=0.092 Score=43.98 Aligned_cols=64 Identities=23% Similarity=0.373 Sum_probs=44.0
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CCCCeeEEeccccchhhHHHHHhhcCC
Q 030299 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRHFDG 117 (179)
Q Consensus 44 ~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~~~v~~i~gDi~~~~~~~~l~~~~~~ 117 (179)
+|+||.||-||++.-+.+. + --.|.|+|+.+.. ..+ ....+||++.... .++.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a-g-------------~~~~~a~e~~~~a~~~y~~N~~--~~~~~Di~~~~~~-----~l~~ 60 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA-G-------------FEVVWAVEIDPDACETYKANFP--EVICGDITEIDPS-----DLPK 60 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT-T-------------EEEEEEEESSHHHHHHHHHHHT--EEEESHGGGCHHH-----HHHH
T ss_pred cEEEEccCccHHHHHHHhc-C-------------cEEEEEeecCHHHHHhhhhccc--ccccccccccccc-----cccc
Confidence 7999999999999998665 2 2479999999853 233 7789999997643 2443
Q ss_pred CCccEEeeCCCC
Q 030299 118 CKADLVVCDGAP 129 (179)
Q Consensus 118 ~~~D~VlsD~~~ 129 (179)
.+|+++.--+|
T Consensus 61 -~~D~l~ggpPC 71 (335)
T PF00145_consen 61 -DVDLLIGGPPC 71 (335)
T ss_dssp -T-SEEEEE---
T ss_pred -cceEEEeccCC
Confidence 58988875543
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.27 E-value=0.44 Score=42.74 Aligned_cols=35 Identities=31% Similarity=0.338 Sum_probs=30.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~ 88 (179)
-+-+.|+|+|+|+|..++.++-.. +-.|.|||-+.
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y--------------~lsV~aIegsq 186 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGY--------------GLSVKAIEGSQ 186 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhcc--------------CceEEEeccch
Confidence 345789999999999999998765 37899999885
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.70 E-value=0.13 Score=42.47 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=29.6
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~ 88 (179)
.-.++|||||-||+..-++...+ +..|+|.+|.-
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fP-------------dtLiLGmEIR~ 94 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFP-------------DTLILGMEIRD 94 (249)
T ss_pred cceEEeeccCccchhhhccccCc-------------cceeeeehhhH
Confidence 34689999999999999999886 68999999875
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=90.10 E-value=0.44 Score=32.73 Aligned_cols=47 Identities=28% Similarity=0.318 Sum_probs=31.2
Q ss_pred EEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CC--CC---eeEEeccccc
Q 030299 45 VVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI--EG---VIQVQGDITN 104 (179)
Q Consensus 45 VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~--~~---v~~i~gDi~~ 104 (179)
++|+|||+|..+ .+.+..+. ...++++|+++.. .. .+ +.+..+|...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~------------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGR------------GAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALG 109 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCC------------CceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEecccc
Confidence 999999999988 55554331 1478999999731 01 11 4667777665
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=89.05 E-value=0.71 Score=35.53 Aligned_cols=45 Identities=9% Similarity=0.093 Sum_probs=35.4
Q ss_pred hHHHHhCCCC-CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC
Q 030299 31 QIDEEFNIFE-GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (179)
Q Consensus 31 eid~~~~ll~-~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~ 89 (179)
|....++.++ ++.+|+|+||+-|.-+.|++-+. ...|+|++.+|-
T Consensus 17 ey~~~Y~~idvk~KtV~dIGA~iGdSaiYF~l~G--------------AK~Vva~E~~~k 62 (156)
T PHA01634 17 EYPHAYGMLNVYQRTIQIVGADCGSSALYFLLRG--------------ASFVVQYEKEEK 62 (156)
T ss_pred HHHHHhhheeecCCEEEEecCCccchhhHHhhcC--------------ccEEEEeccCHH
Confidence 3344455553 68899999999999999998763 368999999984
|
|
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=89.02 E-value=1.1 Score=34.05 Aligned_cols=65 Identities=23% Similarity=0.171 Sum_probs=33.4
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCeeEEeccccchhhHHHHHhhcCCCCc
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~~~~v~~i~gDi~~~~~~~~l~~~~~~~~~ 120 (179)
+..+|+++|-|- ...++...... +..|+++|+.+.....|+.++..|++++.. ++. +..
T Consensus 13 ~~~kiVEVGiG~--~~~vA~~L~~~------------G~dV~~tDi~~~~a~~g~~~v~DDif~P~l--~iY-----~~a 71 (127)
T PF03686_consen 13 NYGKIVEVGIGF--NPEVAKKLKER------------GFDVIATDINPRKAPEGVNFVVDDIFNPNL--EIY-----EGA 71 (127)
T ss_dssp -SSEEEEET-TT----HHHHHHHHH------------S-EEEEE-SS-S----STTEE---SSS--H--HHH-----TTE
T ss_pred CCCcEEEECcCC--CHHHHHHHHHc------------CCcEEEEECcccccccCcceeeecccCCCH--HHh-----cCC
Confidence 344999998764 44443322210 378999999998544899999999999763 121 368
Q ss_pred cEEeeC
Q 030299 121 DLVVCD 126 (179)
Q Consensus 121 D~VlsD 126 (179)
|+|-|=
T Consensus 72 ~lIYSi 77 (127)
T PF03686_consen 72 DLIYSI 77 (127)
T ss_dssp EEEEEE
T ss_pred cEEEEe
Confidence 888873
|
; PDB: 2K4M_A. |
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=88.56 E-value=5 Score=33.47 Aligned_cols=73 Identities=18% Similarity=0.107 Sum_probs=48.7
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC------------CCCeeEEeccccchhhHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------------IEGVIQVQGDITNARTAE 109 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~------------~~~v~~i~gDi~~~~~~~ 109 (179)
+.+||=.|+ +|..-.++++++-. .+..|++++..+..+ .++++++.+|+++.+...
T Consensus 4 ~~~ilVtGa-tGfIG~~l~~~L~~-----------~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~ 71 (322)
T PLN02662 4 GKVVCVTGA-SGYIASWLVKLLLQ-----------RGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFD 71 (322)
T ss_pred CCEEEEECC-hHHHHHHHHHHHHH-----------CCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHH
Confidence 567776665 67777777776642 145788777654210 136889999999977554
Q ss_pred HHHhhcCCCCccEEeeCCCCCC
Q 030299 110 VVIRHFDGCKADLVVCDGAPDV 131 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~~~~ 131 (179)
++.+ .+|.|++.+++..
T Consensus 72 ~~~~-----~~d~Vih~A~~~~ 88 (322)
T PLN02662 72 SVVD-----GCEGVFHTASPFY 88 (322)
T ss_pred HHHc-----CCCEEEEeCCccc
Confidence 4432 5899999887643
|
|
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=88.50 E-value=3.3 Score=34.05 Aligned_cols=64 Identities=14% Similarity=0.271 Sum_probs=48.2
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC--CC----CCCCeeEEeccccchhhHHHHHh
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP--MA----PIEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~--~~----~~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
..+.|++.|..-||-..+.+..+-. .+...+|+++|++- .. ..++|.|++|+-++++..+.+..
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s---------~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~ 138 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMIS---------IGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRR 138 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHh---------cCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHH
Confidence 3458999999999999998876532 12357899988874 22 26899999999999987666554
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=88.38 E-value=0.61 Score=42.94 Aligned_cols=20 Identities=15% Similarity=0.310 Sum_probs=18.2
Q ss_pred CEEEEEccCCChHHHHHHHH
Q 030299 43 KRVVDLCAAPGSWSQVLSRK 62 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~ 62 (179)
..+||+|||.|+|.-++.++
T Consensus 119 R~~LDvGcG~aSF~a~l~~r 138 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER 138 (506)
T ss_pred EEEEeccceeehhHHHHhhC
Confidence 46899999999999999887
|
; GO: 0008168 methyltransferase activity |
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=87.85 E-value=2.4 Score=37.01 Aligned_cols=88 Identities=18% Similarity=0.054 Sum_probs=61.8
Q ss_pred hhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCeeEEec
Q 030299 25 SAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQG 100 (179)
Q Consensus 25 aa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~----~~~v~~i~g 100 (179)
.+|.|.++..+-.+++.+++||=.| |+|.....++..+.. .+..|+++|..+-.. ...+.++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~IlVtG-gtGfIG~~l~~~L~~-----------~G~~V~~v~r~~~~~~~~~~~~~~~~~~ 71 (370)
T PLN02695 4 GAYTLAELEREPYWPSEKLRICITG-AGGFIASHIARRLKA-----------EGHYIIASDWKKNEHMSEDMFCHEFHLV 71 (370)
T ss_pred cccchhhcCCCCCCCCCCCEEEEEC-CccHHHHHHHHHHHh-----------CCCEEEEEEeccccccccccccceEEEC
Confidence 4788999988888888999998654 667777777776642 145899999653211 124678899
Q ss_pred cccchhhHHHHHhhcCCCCccEEeeCCCC
Q 030299 101 DITNARTAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 101 Di~~~~~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
|+++.+....+. .++|+|++-++.
T Consensus 72 Dl~d~~~~~~~~-----~~~D~Vih~Aa~ 95 (370)
T PLN02695 72 DLRVMENCLKVT-----KGVDHVFNLAAD 95 (370)
T ss_pred CCCCHHHHHHHH-----hCCCEEEEcccc
Confidence 999876543332 258999988764
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=87.77 E-value=7.2 Score=31.74 Aligned_cols=75 Identities=13% Similarity=0.106 Sum_probs=49.5
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCeeEEeccccchhhHHHHHhhcC--CCC
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFD--GCK 119 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~~~~v~~i~gDi~~~~~~~~l~~~~~--~~~ 119 (179)
|+++|=.|++.| .-..+++++.. .+.+|+.++.++.. ..++.++++|+++.+..+++.+... -+.
T Consensus 6 gk~vlItGas~g-IG~~ia~~l~~-----------~G~~Vi~~~r~~~~-~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~ 72 (258)
T PRK06398 6 DKVAIVTGGSQG-IGKAVVNRLKE-----------EGSNVINFDIKEPS-YNDVDYFKVDVSNKEQVIKGIDYVISKYGR 72 (258)
T ss_pred CCEEEEECCCch-HHHHHHHHHHH-----------CCCeEEEEeCCccc-cCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 568888887655 44444444432 14689988876543 2468889999999876555554321 136
Q ss_pred ccEEeeCCCC
Q 030299 120 ADLVVCDGAP 129 (179)
Q Consensus 120 ~D~VlsD~~~ 129 (179)
+|+|+++.+.
T Consensus 73 id~li~~Ag~ 82 (258)
T PRK06398 73 IDILVNNAGI 82 (258)
T ss_pred CCEEEECCCC
Confidence 8999998764
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=87.72 E-value=2.7 Score=36.98 Aligned_cols=90 Identities=16% Similarity=0.146 Sum_probs=52.7
Q ss_pred CCCCCEEEEEccCCChH-HHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCeeEEecccc--chhh-HHH
Q 030299 39 FEGVKRVVDLCAAPGSW-SQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDIT--NART-AEV 110 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~-s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----~~~~v~~i~gDi~--~~~~-~~~ 110 (179)
+++|.+||=+||||=|. +...++.++ ..+|+.+|+.+.+ .--|++.+.-+-. +++. .+.
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~G-------------A~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~ 233 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMG-------------ASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAEL 233 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcC-------------CCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHH
Confidence 36799999999999666 555566676 5899999999852 1124433321111 2222 223
Q ss_pred HHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHH
Q 030299 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSI 151 (179)
Q Consensus 111 l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~ 151 (179)
+.+.+....+|+++. ++|. ..+.+..+.|++
T Consensus 234 v~~~~g~~~~d~~~d-----CsG~-----~~~~~aai~a~r 264 (354)
T KOG0024|consen 234 VEKALGKKQPDVTFD-----CSGA-----EVTIRAAIKATR 264 (354)
T ss_pred HHhhccccCCCeEEE-----ccCc-----hHHHHHHHHHhc
Confidence 333344355777664 4555 445555566655
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=87.58 E-value=7.4 Score=32.77 Aligned_cols=77 Identities=16% Similarity=0.176 Sum_probs=52.1
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CCCCeeEEeccccchhhHHHHHhh
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRH 114 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~~~v~~i~gDi~~~~~~~~l~~~ 114 (179)
.+.+||=.|++ ||....+++++.. .+..|+.++.++-. .+.++.++++|+++.+..+++.+.
T Consensus 25 ~~k~vlITGas-ggIG~~~a~~L~~-----------~G~~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~~~~~ 92 (315)
T PRK06196 25 SGKTAIVTGGY-SGLGLETTRALAQ-----------AGAHVIVPARRPDVAREALAGIDGVEVVMLDLADLESVRAFAER 92 (315)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHhhhCeEEEccCCCHHHHHHHHHH
Confidence 45688888865 5566666665532 14688888876521 234588899999998876666554
Q ss_pred cC--CCCccEEeeCCCC
Q 030299 115 FD--GCKADLVVCDGAP 129 (179)
Q Consensus 115 ~~--~~~~D~VlsD~~~ 129 (179)
+. ..++|+|+++.+.
T Consensus 93 ~~~~~~~iD~li~nAg~ 109 (315)
T PRK06196 93 FLDSGRRIDILINNAGV 109 (315)
T ss_pred HHhcCCCCCEEEECCCC
Confidence 32 1469999998864
|
|
| >PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein | Back alignment and domain information |
|---|
Probab=86.91 E-value=2.6 Score=36.06 Aligned_cols=66 Identities=23% Similarity=0.178 Sum_probs=36.9
Q ss_pred CCCEEEEEccCCCh----HHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCeeEEeccccchhhHHHHHhhcC
Q 030299 41 GVKRVVDLCAAPGS----WSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFD 116 (179)
Q Consensus 41 ~g~~VlDLgagpGg----~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~~~~v~~i~gDi~~~~~~~~l~~~~~ 116 (179)
-.++|+-||||.-- -|.+|.+-+|. +..++-.|+.+.-.-.+. .+.+|-.... .
T Consensus 61 ~nMrVlHlGAgSdkGvaPGt~VLrqwlP~------------~ailvDnDi~d~vSDa~~-~~~~Dc~t~~---------~ 118 (299)
T PF06460_consen 61 HNMRVLHLGAGSDKGVAPGTAVLRQWLPE------------DAILVDNDIRDYVSDADQ-SIVGDCRTYM---------P 118 (299)
T ss_dssp TT-EEEEES---TTSB-HHHHHHHHHS-T------------T-EEEEEESS--B-SSSE-EEES-GGGEE---------E
T ss_pred cCcEEEEecccccCCcCCchHHHHHhCCC------------CcEEEecchhhhccccCC-ceeccccccC---------C
Confidence 36799999987432 25677666653 789999999986533344 5678877753 3
Q ss_pred CCCccEEeeCCC
Q 030299 117 GCKADLVVCDGA 128 (179)
Q Consensus 117 ~~~~D~VlsD~~ 128 (179)
+.++|+|+|||=
T Consensus 119 ~~k~DlIiSDmY 130 (299)
T PF06460_consen 119 PDKFDLIISDMY 130 (299)
T ss_dssp SS-EEEEEE---
T ss_pred CCcccEEEEecc
Confidence 468999999995
|
This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A. |
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.57 E-value=5.5 Score=32.81 Aligned_cols=80 Identities=15% Similarity=0.096 Sum_probs=52.4
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--C--CCCeeEEeccccchhhHHHHHhhcC
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--P--IEGVIQVQGDITNARTAEVVIRHFD 116 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--~--~~~v~~i~gDi~~~~~~~~l~~~~~ 116 (179)
.+.+||=.||+ |+....+++++.. .+..|++++.++.. . -.++.++.+|+++.+..+.+.+...
T Consensus 3 ~~k~vlItGas-ggiG~~la~~l~~-----------~G~~Vi~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~~ 70 (277)
T PRK05993 3 MKRSILITGCS-SGIGAYCARALQS-----------DGWRVFATCRKEEDVAALEAEGLEAFQLDYAEPESIAALVAQVL 70 (277)
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHH-----------CCCEEEEEECCHHHHHHHHHCCceEEEccCCCHHHHHHHHHHHH
Confidence 35678877874 6666666665532 24689999877532 1 1367889999999876555554331
Q ss_pred ---CCCccEEeeCCCCCCC
Q 030299 117 ---GCKADLVVCDGAPDVT 132 (179)
Q Consensus 117 ---~~~~D~VlsD~~~~~~ 132 (179)
.+.+|+|+++++....
T Consensus 71 ~~~~g~id~li~~Ag~~~~ 89 (277)
T PRK05993 71 ELSGGRLDALFNNGAYGQP 89 (277)
T ss_pred HHcCCCccEEEECCCcCCC
Confidence 2468999998754433
|
|
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=86.14 E-value=0.54 Score=41.65 Aligned_cols=92 Identities=17% Similarity=0.206 Sum_probs=64.3
Q ss_pred HHHhhCCcchhhhcHHhHHHHhCC-------CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCC
Q 030299 15 KAKEEGWRARSAFKLLQIDEEFNI-------FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQ 87 (179)
Q Consensus 15 ~a~~~~~~sRaa~KL~eid~~~~l-------l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~ 87 (179)
...+...+.|++.=-..+|+...+ .+||+-|.|==.|||++..-++. + ++.|+|-||.
T Consensus 175 li~~y~LK~R~yiGnTSmDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~-F--------------Ga~viGtDID 239 (421)
T KOG2671|consen 175 LIEKYDLKKRCYIGNTSMDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAH-F--------------GAYVIGTDID 239 (421)
T ss_pred HhhhcccccccccCCcccchhHHHHHhhhhccCCCCEEecCccccCceeeehhh-h--------------cceeeccccc
Confidence 344556677777666666666554 37899999999999998776654 3 3799999998
Q ss_pred CC--C---C----------CCC-----eeEEeccccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 88 PM--A---P----------IEG-----VIQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 88 ~~--~---~----------~~~-----v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
-+ . . -+| +..+.+|.+++... ....||.|+||.+
T Consensus 240 yr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~r-------sn~~fDaIvcDPP 293 (421)
T KOG2671|consen 240 YRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLR-------SNLKFDAIVCDPP 293 (421)
T ss_pred hheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchh-------hcceeeEEEeCCC
Confidence 63 1 0 122 33567888887642 2457999999973
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=85.97 E-value=0.64 Score=42.67 Aligned_cols=82 Identities=12% Similarity=0.015 Sum_probs=47.0
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CCC--CeeEEeccccchhhHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIE--GVIQVQGDITNARTAE 109 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~~~--~v~~i~gDi~~~~~~~ 109 (179)
...+|+|.|||.|++...++++.... +. . .+....++|+|+.+.. ... +.....+|.......
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~-~~---~-~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~- 104 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEI-NY---F-KEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLL- 104 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhc-CC---c-ccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccc-
Confidence 45689999999999999998876410 00 0 0113578999998842 111 233344443321100
Q ss_pred HHHhhcCCCCccEEeeCCCCC
Q 030299 110 VVIRHFDGCKADLVVCDGAPD 130 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~~~ 130 (179)
.... ..++||+|+++.+..
T Consensus 105 -~~~~-~~~~fD~IIgNPPy~ 123 (524)
T TIGR02987 105 -NIES-YLDLFDIVITNPPYG 123 (524)
T ss_pred -cccc-ccCcccEEEeCCCcc
Confidence 0000 124799999987543
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.77 E-value=1.1 Score=36.97 Aligned_cols=38 Identities=16% Similarity=0.141 Sum_probs=31.6
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~ 88 (179)
+++|++|+|+=-|-|.||+.++..+++ .+.|+++=..+
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp------------~G~Vy~~~p~e 83 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGP------------KGKVYAYVPAE 83 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCC------------ceeEEEecchh
Confidence 489999999999999999999999886 56777664444
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=85.66 E-value=2.8 Score=36.48 Aligned_cols=74 Identities=16% Similarity=0.154 Sum_probs=45.6
Q ss_pred CCCCCEEEEEccCC-ChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----CCCCeeEEeccccchhhHHHHH
Q 030299 39 FEGVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----PIEGVIQVQGDITNARTAEVVI 112 (179)
Q Consensus 39 l~~g~~VlDLgagp-Gg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----~~~~v~~i~gDi~~~~~~~~l~ 112 (179)
++++++||.+|||+ |..+..+++..+ ...|+++|.++.. ...++..+...-.+ ...+.+.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g-------------~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~-~~~~~l~ 247 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLG-------------AERVIAIDRVPERLEMARSHLGAETINFEEVD-DVVEALR 247 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-------------CCEEEEEcCCHHHHHHHHHcCCcEEEcCCcch-HHHHHHH
Confidence 46789999999887 777778888765 2469999988732 22244333221111 1333444
Q ss_pred hhcCCCCccEEeeC
Q 030299 113 RHFDGCKADLVVCD 126 (179)
Q Consensus 113 ~~~~~~~~D~VlsD 126 (179)
....++.+|+|+--
T Consensus 248 ~~~~~~~~D~vld~ 261 (386)
T cd08283 248 ELTGGRGPDVCIDA 261 (386)
T ss_pred HHcCCCCCCEEEEC
Confidence 44445579998764
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=85.58 E-value=0.84 Score=39.28 Aligned_cols=62 Identities=18% Similarity=0.197 Sum_probs=42.8
Q ss_pred EEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CCCCeeEEeccccchhhHHHHHhhcCCC
Q 030299 45 VVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRHFDGC 118 (179)
Q Consensus 45 VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~~~v~~i~gDi~~~~~~~~l~~~~~~~ 118 (179)
|+||.||.||++.-+.+. + --.|.|+|+.+.. ..++ ..+.+||.+.... .++
T Consensus 1 vidLF~G~GG~~~Gl~~a-G-------------~~~~~a~e~~~~a~~ty~~N~~~-~~~~~Di~~~~~~-----~~~-- 58 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA-G-------------FKCVFASEIDKYAQKTYEANFGN-KVPFGDITKISPS-----DIP-- 58 (315)
T ss_pred CEEEecCccHHHHHHHHc-C-------------CeEEEEEeCCHHHHHHHHHhCCC-CCCccChhhhhhh-----hCC--
Confidence 689999999999888653 2 2346789998842 2444 5667899886531 122
Q ss_pred CccEEeeCCC
Q 030299 119 KADLVVCDGA 128 (179)
Q Consensus 119 ~~D~VlsD~~ 128 (179)
.+|+++.--+
T Consensus 59 ~~dvl~gg~P 68 (315)
T TIGR00675 59 DFDILLGGFP 68 (315)
T ss_pred CcCEEEecCC
Confidence 5899887544
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.51 E-value=4.3 Score=32.72 Aligned_cols=76 Identities=21% Similarity=0.125 Sum_probs=49.2
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCC-CCeeEEeccccchhhHHHHHhhcC--C
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPI-EGVIQVQGDITNARTAEVVIRHFD--G 117 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~~-~~v~~i~gDi~~~~~~~~l~~~~~--~ 117 (179)
++++||=.|++.| ....+++++.. .+..|++++.++-... .++.++++|+.+.+..+++.+... -
T Consensus 8 ~~k~vlItGas~g-IG~~ia~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 75 (260)
T PRK06523 8 AGKRALVTGGTKG-IGAATVARLLE-----------AGARVVTTARSRPDDLPEGVEFVAADLTTAEGCAAVARAVLERL 75 (260)
T ss_pred CCCEEEEECCCCc-hhHHHHHHHHH-----------CCCEEEEEeCChhhhcCCceeEEecCCCCHHHHHHHHHHHHHHc
Confidence 3678888887655 44554444431 1468999987754322 357789999999876555443321 1
Q ss_pred CCccEEeeCCC
Q 030299 118 CKADLVVCDGA 128 (179)
Q Consensus 118 ~~~D~VlsD~~ 128 (179)
+.+|.|++...
T Consensus 76 ~~id~vi~~ag 86 (260)
T PRK06523 76 GGVDILVHVLG 86 (260)
T ss_pred CCCCEEEECCc
Confidence 36899999875
|
|
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=85.18 E-value=5 Score=33.71 Aligned_cols=84 Identities=19% Similarity=0.167 Sum_probs=62.6
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCC--CCCCC---CCeeEEeccccchhhHHHHHh-
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQ--PMAPI---EGVIQVQGDITNARTAEVVIR- 113 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~--~~~~~---~~v~~i~gDi~~~~~~~~l~~- 113 (179)
.....||=.||+.||..-.++..+.. ++.+|+|.--+ +|..+ .|+....-|+++++...++..
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~-----------~G~~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~e 73 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFAR-----------NGYLVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGE 73 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHh-----------CCeEEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHH
Confidence 34568999999999999988887753 36788887544 46433 378888999999876444443
Q ss_pred --hcCCCCccEEeeCCCCCCCCC
Q 030299 114 --HFDGCKADLVVCDGAPDVTGL 134 (179)
Q Consensus 114 --~~~~~~~D~VlsD~~~~~~g~ 134 (179)
.+++++.|+++.+...++++.
T Consensus 74 vr~~~~Gkld~L~NNAG~~C~~P 96 (289)
T KOG1209|consen 74 VRANPDGKLDLLYNNAGQSCTFP 96 (289)
T ss_pred HhhCCCCceEEEEcCCCCCcccc
Confidence 246788999999998777765
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.38 E-value=5.6 Score=31.40 Aligned_cols=74 Identities=16% Similarity=0.114 Sum_probs=49.8
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--C--CCCeeEEeccccchhhHHHHHhhcCCCC
Q 030299 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--P--IEGVIQVQGDITNARTAEVVIRHFDGCK 119 (179)
Q Consensus 44 ~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--~--~~~v~~i~gDi~~~~~~~~l~~~~~~~~ 119 (179)
++|=.|+ .|+....+++.+.. .+..|+.++.++.. . ..+++++++|+++.+..+++.+.+.+.+
T Consensus 3 ~vlvtG~-sg~iG~~la~~L~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 70 (222)
T PRK06953 3 TVLIVGA-SRGIGREFVRQYRA-----------DGWRVIATARDAAALAALQALGAEALALDVADPASVAGLAWKLDGEA 70 (222)
T ss_pred eEEEEcC-CCchhHHHHHHHHh-----------CCCEEEEEECCHHHHHHHHhccceEEEecCCCHHHHHHHHHHhcCCC
Confidence 4554555 46666666665532 24688888877531 1 1356788999999988777765555557
Q ss_pred ccEEeeCCCC
Q 030299 120 ADLVVCDGAP 129 (179)
Q Consensus 120 ~D~VlsD~~~ 129 (179)
+|.|++....
T Consensus 71 ~d~vi~~ag~ 80 (222)
T PRK06953 71 LDAAVYVAGV 80 (222)
T ss_pred CCEEEECCCc
Confidence 9999997654
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=84.18 E-value=1.4 Score=35.84 Aligned_cols=48 Identities=21% Similarity=0.225 Sum_probs=35.6
Q ss_pred EEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC--C---------C-CCCeeEEeccccch
Q 030299 45 VVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM--A---------P-IEGVIQVQGDITNA 105 (179)
Q Consensus 45 VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~--~---------~-~~~v~~i~gDi~~~ 105 (179)
|+|+||=-|....+|.++.. ..+|+|+|+++- + . ...+++..||-.+.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~-------------~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~ 60 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK-------------APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEV 60 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS-------------EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG
T ss_pred CceeccchhHHHHHHHhcCC-------------CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccc
Confidence 68999999999999999854 468999999983 1 1 23588888886653
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=84.17 E-value=7.5 Score=34.77 Aligned_cols=100 Identities=17% Similarity=0.161 Sum_probs=64.6
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCC----CCCC-C---------------------CCCCCCCeEEEEeCCCC----
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPA----KLSP-D---------------------SREGDLPLIVAIDLQPM---- 89 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~----~~~~-~---------------------~~~~~~~~VvavD~~~~---- 89 (179)
+++..++|-=||.|.+...++.....-+ +.++ + ..+.+-..++|+|+.+-
T Consensus 190 ~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~ 269 (381)
T COG0116 190 KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG 269 (381)
T ss_pred CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence 4567899999999999999887653211 1111 0 00111125789999983
Q ss_pred -------CCC-CCeeEEeccccchhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHH
Q 030299 90 -------API-EGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVS 150 (179)
Q Consensus 90 -------~~~-~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL 150 (179)
... .-++|.++|+++.... + +.+|+|+||.+ .|.+--++.+...|+..-.
T Consensus 270 Ak~NA~~AGv~d~I~f~~~d~~~l~~~------~--~~~gvvI~NPP---YGeRlg~~~~v~~LY~~fg 327 (381)
T COG0116 270 AKANARAAGVGDLIEFKQADATDLKEP------L--EEYGVVISNPP---YGERLGSEALVAKLYREFG 327 (381)
T ss_pred HHHHHHhcCCCceEEEEEcchhhCCCC------C--CcCCEEEeCCC---cchhcCChhhHHHHHHHHH
Confidence 122 2478999999997531 1 57999999964 6777777755555665433
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=83.95 E-value=15 Score=31.34 Aligned_cols=74 Identities=22% Similarity=0.129 Sum_probs=48.5
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC---------CCCeeEEeccccchhhHHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP---------IEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~---------~~~v~~i~gDi~~~~~~~~l 111 (179)
.+++||=.| |+|....++++++-. .+..|+++|..+... ...+.++.+|+++.+...++
T Consensus 3 ~~k~ilItG-atG~IG~~l~~~L~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 70 (349)
T TIGR02622 3 QGKKVLVTG-HTGFKGSWLSLWLLE-----------LGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKA 70 (349)
T ss_pred CCCEEEEEC-CCChhHHHHHHHHHH-----------CCCEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHH
Confidence 356787777 455566666665532 146899998765321 12467889999998766555
Q ss_pred HhhcCCCCccEEeeCCCC
Q 030299 112 IRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 112 ~~~~~~~~~D~VlsD~~~ 129 (179)
.+. .++|+|++-++.
T Consensus 71 ~~~---~~~d~vih~A~~ 85 (349)
T TIGR02622 71 IAE---FKPEIVFHLAAQ 85 (349)
T ss_pred Hhh---cCCCEEEECCcc
Confidence 442 358999998764
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=83.78 E-value=1.6 Score=35.71 Aligned_cols=27 Identities=15% Similarity=0.308 Sum_probs=22.5
Q ss_pred CCCCC-EEEEEccCCChHHHHHHHHhCC
Q 030299 39 FEGVK-RVVDLCAAPGSWSQVLSRKLYL 65 (179)
Q Consensus 39 l~~g~-~VlDLgagpGg~s~~l~~~~~~ 65 (179)
+.+.. +||+||+|+|....+++..++.
T Consensus 22 l~~~~~~vLEiaSGtGqHa~~FA~~lP~ 49 (204)
T PF06080_consen 22 LPDSGTRVLEIASGTGQHAVYFAQALPH 49 (204)
T ss_pred hCccCceEEEEcCCccHHHHHHHHHCCC
Confidence 44444 5999999999999999999873
|
The function of this family is unknown. |
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=83.22 E-value=4.6 Score=32.93 Aligned_cols=78 Identities=17% Similarity=0.056 Sum_probs=52.3
Q ss_pred CCCEEEEEccCCC-hHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CCCCeeEEeccccchhhHHH
Q 030299 41 GVKRVVDLCAAPG-SWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 41 ~g~~VlDLgagpG-g~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~~~~v~~i~gDi~~~~~~~~ 110 (179)
.++++|=.|++.| |.-..+++++.. .+..|+.+|.++.. ....+.++++|+++.+..++
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~-----------~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~ 77 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRA-----------LGAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEA 77 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHH-----------cCCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHH
Confidence 4678999999973 777776666532 14677777776421 12345578999999887666
Q ss_pred HHhhcCC--CCccEEeeCCCC
Q 030299 111 VIRHFDG--CKADLVVCDGAP 129 (179)
Q Consensus 111 l~~~~~~--~~~D~VlsD~~~ 129 (179)
+.+...+ +.+|+++++...
T Consensus 78 ~~~~~~~~~g~ld~lv~nAg~ 98 (258)
T PRK07533 78 VFARIAEEWGRLDFLLHSIAF 98 (258)
T ss_pred HHHHHHHHcCCCCEEEEcCcc
Confidence 6554321 468999998764
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.03 E-value=7.5 Score=30.93 Aligned_cols=77 Identities=9% Similarity=-0.064 Sum_probs=51.5
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~~ 110 (179)
...++|=.|+ .|+....+++++.. .+.+|+.++.++.. ...++.++++|+++.+....
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 72 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAK-----------AGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAP 72 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHH
Confidence 4567888885 67787777777642 24689999977531 01357788999999876555
Q ss_pred HHhhcC--CCCccEEeeCCCC
Q 030299 111 VIRHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 111 l~~~~~--~~~~D~VlsD~~~ 129 (179)
+.+... -++.|.|++....
T Consensus 73 ~~~~~~~~~~~id~lv~~ag~ 93 (241)
T PRK07454 73 GIAELLEQFGCPDVLINNAGM 93 (241)
T ss_pred HHHHHHHHcCCCCEEEECCCc
Confidence 444321 1358999987753
|
|
| >PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.80 E-value=16 Score=29.47 Aligned_cols=77 Identities=12% Similarity=0.024 Sum_probs=50.8
Q ss_pred CCEEEEEccCC-ChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------C---------C-CCCeeEEe
Q 030299 42 VKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------A---------P-IEGVIQVQ 99 (179)
Q Consensus 42 g~~VlDLgagp-Gg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~---------~-~~~v~~i~ 99 (179)
+.+||=.|++. ||....+++++.. .+..|+.++.++. . . ...+.+++
T Consensus 5 ~k~vlItGas~~~giG~~la~~l~~-----------~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (256)
T PRK12748 5 KKIALVTGASRLNGIGAAVCRRLAA-----------KGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHME 73 (256)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHH-----------cCCcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEE
Confidence 46788889874 6787777776642 1467888876621 0 0 12478889
Q ss_pred ccccchhhHHHHHhhcC--CCCccEEeeCCCC
Q 030299 100 GDITNARTAEVVIRHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 100 gDi~~~~~~~~l~~~~~--~~~~D~VlsD~~~ 129 (179)
+|+++.+....+.+... -+.+|.|++..+.
T Consensus 74 ~D~~~~~~~~~~~~~~~~~~g~id~vi~~ag~ 105 (256)
T PRK12748 74 IDLSQPYAPNRVFYAVSERLGDPSILINNAAY 105 (256)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCCEEEECCCc
Confidence 99999876555444332 1368999998754
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=82.52 E-value=22 Score=28.04 Aligned_cols=75 Identities=15% Similarity=0.097 Sum_probs=51.2
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCC-eEEEEeCCCCCC---CCCeeEEeccccchhhHHHHHhhcC
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP-LIVAIDLQPMAP---IEGVIQVQGDITNARTAEVVIRHFD 116 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~-~VvavD~~~~~~---~~~v~~i~gDi~~~~~~~~l~~~~~ 116 (179)
.+.+||=.|+ .|+....+++.+.. .+. .|+.++.++.+. ..++.++.+|+.+.+..+++.+.+
T Consensus 5 ~~~~vlItGg-sg~iG~~la~~l~~-----------~G~~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~- 71 (238)
T PRK08264 5 KGKVVLVTGA-NRGIGRAFVEQLLA-----------RGAAKVYAAARDPESVTDLGPRVVPLQLDVTDPASVAAAAEAA- 71 (238)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHH-----------CCcccEEEEecChhhhhhcCCceEEEEecCCCHHHHHHHHHhc-
Confidence 3457777775 56566665555432 134 788888765321 246888999999988777777654
Q ss_pred CCCccEEeeCCCC
Q 030299 117 GCKADLVVCDGAP 129 (179)
Q Consensus 117 ~~~~D~VlsD~~~ 129 (179)
..+|.|++..+.
T Consensus 72 -~~id~vi~~ag~ 83 (238)
T PRK08264 72 -SDVTILVNNAGI 83 (238)
T ss_pred -CCCCEEEECCCc
Confidence 358999998865
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=82.21 E-value=2.4 Score=38.94 Aligned_cols=84 Identities=17% Similarity=0.154 Sum_probs=52.1
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------CCCCe----eEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIEGV----IQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------~~~~v----~~i~gDi~~~~~ 107 (179)
.+.++|.|-+||+||+...+.+.++.. .....+.|.++.+.. -+.|+ ....+|-...+.
T Consensus 185 ~~~~~i~DpacGsgg~l~~a~~~~~~~---------~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~ 255 (489)
T COG0286 185 EPRNSIYDPACGSGGMLLQAAKYLKRH---------QDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPK 255 (489)
T ss_pred CCCCeecCCCCchhHHHHHHHHHHHhh---------ccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCc
Confidence 567799999999999999888887521 003679999987721 12233 233444433221
Q ss_pred HHHHHhhcCCCCccEEeeCCCCCCCCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGAPDVTGLH 135 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~~~~~g~~ 135 (179)
... ......||.|+++.+++..+..
T Consensus 256 ~~~---~~~~~~~D~viaNPPf~~~~~~ 280 (489)
T COG0286 256 HDD---KDDKGKFDFVIANPPFSGKGWG 280 (489)
T ss_pred ccc---cCCccceeEEEeCCCCCccccc
Confidence 110 1233679999999988754443
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=81.97 E-value=2.5 Score=34.97 Aligned_cols=94 Identities=18% Similarity=0.162 Sum_probs=53.6
Q ss_pred chHHHHHHhhCCcch---hhhcHHhHHHHhCCCCC----CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEE
Q 030299 10 DIYYRKAKEEGWRAR---SAFKLLQIDEEFNIFEG----VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIV 82 (179)
Q Consensus 10 d~y~~~a~~~~~~sR---aa~KL~eid~~~~ll~~----g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~Vv 82 (179)
+.|....+...-..| +.-.|.+-......-.+ .-++||+||=...- .....+ -..|+
T Consensus 13 ~~YQ~AS~~Gq~~~RGGdSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N---~~s~~~-------------~fdvt 76 (219)
T PF11968_consen 13 EAYQRASKQGQSKDRGGDSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDN---ACSTSG-------------WFDVT 76 (219)
T ss_pred HHHHHHHHhcCCCCCCCchhHHHHHHhhhhccccccccccceEEeecccCCCC---cccccC-------------ceeeE
Confidence 445333333334556 55556554444332212 25899999973321 111223 25699
Q ss_pred EEeCCCCCCCCCeeEEeccccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 83 AIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 83 avD~~~~~~~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
+||+.+.. ++| .+.|+.+.+.. .-+++.||+|.+.+.
T Consensus 77 ~IDLns~~--~~I--~qqDFm~rplp-----~~~~e~FdvIs~SLV 113 (219)
T PF11968_consen 77 RIDLNSQH--PGI--LQQDFMERPLP-----KNESEKFDVISLSLV 113 (219)
T ss_pred EeecCCCC--CCc--eeeccccCCCC-----CCcccceeEEEEEEE
Confidence 99999954 444 58999886421 113568999988774
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=81.74 E-value=1.8 Score=36.59 Aligned_cols=43 Identities=16% Similarity=0.149 Sum_probs=27.3
Q ss_pred HHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC
Q 030299 33 DEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (179)
Q Consensus 33 d~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~ 88 (179)
++.|+.+.+.++|+|||||-==++....... ++..++|.|+..
T Consensus 97 ~~if~~~~~p~sVlDigCGlNPlalp~~~~~-------------~~a~Y~a~DID~ 139 (251)
T PF07091_consen 97 DEIFGRIPPPDSVLDIGCGLNPLALPWMPEA-------------PGATYIAYDIDS 139 (251)
T ss_dssp HHHCCCS---SEEEEET-TTCHHHHHTTTSS-------------TT-EEEEEESBH
T ss_pred HHHHhcCCCCchhhhhhccCCceehhhcccC-------------CCcEEEEEeCCH
Confidence 3445666778999999999876666543322 256999999997
|
|
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=81.31 E-value=2.9 Score=36.16 Aligned_cols=68 Identities=19% Similarity=0.241 Sum_probs=45.5
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CCCCeeEEeccccchhhHHHHHhhcC
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRHFD 116 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~~~v~~i~gDi~~~~~~~~l~~~~~ 116 (179)
.+++||.||-||++..+... + --.+.++|+.|.. ..+...++.+|+...... .+.
T Consensus 4 ~~~idLFsG~GG~~lGf~~a-g-------------f~~~~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~~-----~~~ 64 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEA-G-------------FEIVFANEIDPPAVATYKANFPHGDIILGDIKELDGE-----ALR 64 (328)
T ss_pred ceEEeeccCCchHHHHHHhc-C-------------CeEEEEEecCHHHHHHHHHhCCCCceeechHhhcChh-----hcc
Confidence 47999999999999776543 2 2468899999953 233345677888865431 122
Q ss_pred CCCccEEeeCCCC
Q 030299 117 GCKADLVVCDGAP 129 (179)
Q Consensus 117 ~~~~D~VlsD~~~ 129 (179)
...+|+++.--+|
T Consensus 65 ~~~~DvligGpPC 77 (328)
T COG0270 65 KSDVDVLIGGPPC 77 (328)
T ss_pred ccCCCEEEeCCCC
Confidence 2278998875543
|
|
| >PHA03108 poly(A) polymerase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=81.21 E-value=25 Score=30.39 Aligned_cols=80 Identities=16% Similarity=0.229 Sum_probs=53.6
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCeeEEeccccchhhHHHHHhhcCC
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHFDG 117 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----~~~~v~~i~gDi~~~~~~~~l~~~~~~ 117 (179)
|..|+=+|+|||....+|.+..... +..-+-+-+|..+.. .+++|+.++ +.++.+..+.+.+.+.
T Consensus 61 g~~VVYiGSApG~HI~~L~~lf~~l---------g~~ikw~LiDp~~h~~~Le~l~nV~Li~-~f~de~~i~~~r~~~~- 129 (300)
T PHA03108 61 GSTIVYIGSAPGTHIRYLRDHFYSL---------GVVIKWMLIDGRKHDPILNGLRDVTLVT-RFVDEAYLRRLKKQLH- 129 (300)
T ss_pred CceEEEecCCCCccHHHHHHHHHhc---------CCCeEEEEECCCcccHhhcCCCcEEeeH-hhcCHHHHHHHHHhcc-
Confidence 6799999999999999998877520 012367778988863 466776554 4666666666655443
Q ss_pred CCccEE-eeCCCCCCCC
Q 030299 118 CKADLV-VCDGAPDVTG 133 (179)
Q Consensus 118 ~~~D~V-lsD~~~~~~g 133 (179)
+-|++ +||....-.|
T Consensus 130 -~~~illISDIRS~~~g 145 (300)
T PHA03108 130 -PSKIILISDIRSKRGG 145 (300)
T ss_pred -CCCEEEEEeecccCCC
Confidence 34655 6777654434
|
|
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=80.92 E-value=12 Score=31.45 Aligned_cols=68 Identities=24% Similarity=0.262 Sum_probs=44.9
Q ss_pred CCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-------CCCCeeEEeccccchhhHHHHHhhcCCCCccEE
Q 030299 51 APGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------PIEGVIQVQGDITNARTAEVVIRHFDGCKADLV 123 (179)
Q Consensus 51 gpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-------~~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~V 123 (179)
|.|-...++.+++-.. +....|.++|+.+.. .....+++++|+++.+...+.. .++|+|
T Consensus 5 gsGflG~~iv~~Ll~~---------g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~-----~g~d~V 70 (280)
T PF01073_consen 5 GSGFLGSHIVRQLLER---------GYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEAL-----EGVDVV 70 (280)
T ss_pred CCcHHHHHHHHHHHHC---------CCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHHh-----cCCceE
Confidence 6677777777766421 112578899988742 1233448999999987655543 368999
Q ss_pred eeCCCCCCC
Q 030299 124 VCDGAPDVT 132 (179)
Q Consensus 124 lsD~~~~~~ 132 (179)
++-.++...
T Consensus 71 ~H~Aa~~~~ 79 (280)
T PF01073_consen 71 FHTAAPVPP 79 (280)
T ss_pred EEeCccccc
Confidence 999876443
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=80.85 E-value=32 Score=28.76 Aligned_cols=72 Identities=21% Similarity=0.177 Sum_probs=47.2
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------C-CCCeeEEeccccchhhH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQVQGDITNARTA 108 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~-~~~v~~i~gDi~~~~~~ 108 (179)
.+++||=.| |+|+....+++++-. .+..|++++.++.. . ..++.++++|+++.+..
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~ 71 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLF-----------RGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSF 71 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHH-----------CCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHH
Confidence 356788877 467777777766532 14577666544321 0 13578899999998765
Q ss_pred HHHHhhcCCCCccEEeeCCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~ 129 (179)
+++.+ .+|.|++..+.
T Consensus 72 ~~~~~-----~~d~vih~A~~ 87 (325)
T PLN02989 72 ELAID-----GCETVFHTASP 87 (325)
T ss_pred HHHHc-----CCCEEEEeCCC
Confidence 55442 47999998874
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=80.85 E-value=1.4 Score=31.44 Aligned_cols=63 Identities=29% Similarity=0.214 Sum_probs=43.8
Q ss_pred cCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCeeEEeccccchhhHHHHHhhcCCCCccEEee
Q 030299 50 AAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVC 125 (179)
Q Consensus 50 agpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----~~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~Vls 125 (179)
||.|..+..+++.+.. ....|+.+|..+.. .-.++.++.||.++.++.++. .-..++.|++
T Consensus 4 ~G~g~~~~~i~~~L~~-----------~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a----~i~~a~~vv~ 68 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKE-----------GGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERA----GIEKADAVVI 68 (116)
T ss_dssp ES-SHHHHHHHHHHHH-----------TTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHT----TGGCESEEEE
T ss_pred EcCCHHHHHHHHHHHh-----------CCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhc----CccccCEEEE
Confidence 5777888888887753 12389999999842 235788999999999876543 2246888887
Q ss_pred CC
Q 030299 126 DG 127 (179)
Q Consensus 126 D~ 127 (179)
..
T Consensus 69 ~~ 70 (116)
T PF02254_consen 69 LT 70 (116)
T ss_dssp ES
T ss_pred cc
Confidence 64
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=80.78 E-value=5.7 Score=33.61 Aligned_cols=77 Identities=14% Similarity=0.120 Sum_probs=50.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------C-------CCCeeEEeccccc
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P-------IEGVIQVQGDITN 104 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------~-------~~~v~~i~gDi~~ 104 (179)
...++||=+|.|-||-.+.+++. + .+|+-||+.+.- | -|+++.+.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-~--------------~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~----- 130 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-D--------------THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK----- 130 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-C--------------CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-----
Confidence 45689999999999988887764 2 389999998841 1 24454442
Q ss_pred hhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHH
Q 030299 105 ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSI 151 (179)
Q Consensus 105 ~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~ 151 (179)
.+.+. ..++||+|+.|..++ .+ ..+.+..+|+
T Consensus 131 -----~~~~~-~~~~fDVIIvDs~~~-------~~--fy~~~~~~L~ 162 (262)
T PRK00536 131 -----QLLDL-DIKKYDLIICLQEPD-------IH--KIDGLKRMLK 162 (262)
T ss_pred -----hhhhc-cCCcCCEEEEcCCCC-------hH--HHHHHHHhcC
Confidence 11111 235899999997542 22 2355666665
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=80.75 E-value=11 Score=30.63 Aligned_cols=78 Identities=13% Similarity=0.076 Sum_probs=50.9
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCeeEEeccccchhhHHHHHhhcC-
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHFD- 116 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----~~~~v~~i~gDi~~~~~~~~l~~~~~- 116 (179)
+.+|+=.|+ .|+....+++++.. .+..|++++.++.. ...++.++++|+++.+..+++.+...
T Consensus 3 ~k~vlItGa-sggiG~~la~~l~~-----------~G~~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 70 (273)
T PRK06182 3 KKVALVTGA-SSGIGKATARRLAA-----------QGYTVYGAARRVDKMEDLASLGVHPLSLDVTDEASIKAAVDTIIA 70 (273)
T ss_pred CCEEEEECC-CChHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHH
Confidence 456776675 55666666666532 14689988876531 12468889999999886655554321
Q ss_pred -CCCccEEeeCCCCCC
Q 030299 117 -GCKADLVVCDGAPDV 131 (179)
Q Consensus 117 -~~~~D~VlsD~~~~~ 131 (179)
..++|+|++..+...
T Consensus 71 ~~~~id~li~~ag~~~ 86 (273)
T PRK06182 71 EEGRIDVLVNNAGYGS 86 (273)
T ss_pred hcCCCCEEEECCCcCC
Confidence 236899999886543
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.51 E-value=5 Score=31.72 Aligned_cols=79 Identities=6% Similarity=0.030 Sum_probs=51.2
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CC---CCeeEEeccccchhhHHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI---EGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~---~~v~~i~gDi~~~~~~~~l 111 (179)
++.+||=.|+ .|+....+++++.. .+..|++++.++-. .+ .++.++++|+++.+...++
T Consensus 5 ~~~~ilItGa-tg~iG~~la~~l~~-----------~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~ 72 (237)
T PRK07326 5 KGKVALITGG-SKGIGFAIAEALLA-----------EGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRA 72 (237)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHH-----------CCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHH
Confidence 3567888885 66676666665532 14689999876621 11 4678889999998765554
Q ss_pred HhhcC--CCCccEEeeCCCCCC
Q 030299 112 IRHFD--GCKADLVVCDGAPDV 131 (179)
Q Consensus 112 ~~~~~--~~~~D~VlsD~~~~~ 131 (179)
.+... -+.+|.|++..++..
T Consensus 73 ~~~~~~~~~~~d~vi~~ag~~~ 94 (237)
T PRK07326 73 VDAIVAAFGGLDVLIANAGVGH 94 (237)
T ss_pred HHHHHHHcCCCCEEEECCCCCC
Confidence 44321 136899998876543
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.02 E-value=25 Score=28.38 Aligned_cols=78 Identities=17% Similarity=0.091 Sum_probs=49.2
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CCCCeeEEeccccchhhHHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~~~~v~~i~gDi~~~~~~~~l 111 (179)
++.+||=.|++.| ....+++.+.. .+..|++++.++-. ...++.++++|+++.+..+++
T Consensus 4 ~~~~vlItG~s~~-iG~~ia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~ 71 (263)
T PRK09072 4 KDKRVLLTGASGG-IGQALAEALAA-----------AGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAV 71 (263)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHH-----------CCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHH
Confidence 3567777787754 44444444321 24689999876521 123678889999998765555
Q ss_pred HhhcC-CCCccEEeeCCCCC
Q 030299 112 IRHFD-GCKADLVVCDGAPD 130 (179)
Q Consensus 112 ~~~~~-~~~~D~VlsD~~~~ 130 (179)
.+... -+.+|.|++..+..
T Consensus 72 ~~~~~~~~~id~lv~~ag~~ 91 (263)
T PRK09072 72 LARAREMGGINVLINNAGVN 91 (263)
T ss_pred HHHHHhcCCCCEEEECCCCC
Confidence 44321 24689999987643
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 179 | ||||
| 2nyu_A | 196 | Crystal Structure Of Human Ftsj Homolog 2 (E.Coli) | 2e-16 | ||
| 1eiz_A | 180 | Ftsj Rna Methyltransferase Complexed With S- Adenos | 4e-11 | ||
| 2plw_A | 201 | Crystal Structure Of A Ribosomal Rna Methyltransfer | 3e-06 | ||
| 3dou_A | 191 | Crystal Structure Of Methyltransferase Involved In | 7e-05 |
| >pdb|2NYU|A Chain A, Crystal Structure Of Human Ftsj Homolog 2 (E.Coli) Protein In Complex With S-Adenosylmethionine Length = 196 | Back alignment and structure |
|
| >pdb|1EIZ|A Chain A, Ftsj Rna Methyltransferase Complexed With S- Adenosylmethionine Length = 180 | Back alignment and structure |
|
| >pdb|2PLW|A Chain A, Crystal Structure Of A Ribosomal Rna Methyltransferase, Putative, From Plasmodium Falciparum (Pf13_0052) Length = 201 | Back alignment and structure |
|
| >pdb|3DOU|A Chain A, Crystal Structure Of Methyltransferase Involved In Cell Division From Thermoplasma Volcanicum Gss1 Length = 191 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 189 bits (483), Expect = 4e-62
Identities = 43/130 (33%), Positives = 70/130 (53%), Gaps = 5/130 (3%)
Query: 21 WRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPL 80
+R+RSAFKLL+++E I RV+D AAPG+WSQV +K+
Sbjct: 2 YRSRSAFKLLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPV----GF 57
Query: 81 IVAIDLQPMAPIEGVIQ-VQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDE 139
++ +DL + P+EG D+T+ RT++ ++ G +AD+++ D AP+ TG D+D
Sbjct: 58 VLGVDLLHIFPLEGATFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDH 117
Query: 140 FVQSQLILAV 149
L L +
Sbjct: 118 DRLISLCLTL 127
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* Length = 180 | Back alignment and structure |
|---|
Score = 188 bits (479), Expect = 9e-62
Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 12/130 (9%)
Query: 20 GWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP 79
G R+R+ FKL +I + +F+ VVDL AAPG WSQ + ++ G
Sbjct: 1 GLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQI------------GGKG 48
Query: 80 LIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDE 139
I+A DL PM PI GV +QGD + + ++ K +V+ D AP+++G +D
Sbjct: 49 RIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDI 108
Query: 140 FVQSQLILAV 149
L+
Sbjct: 109 PRAMYLVELA 118
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} Length = 191 | Back alignment and structure |
|---|
Score = 180 bits (460), Expect = 1e-58
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 18/134 (13%)
Query: 19 EGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDL 78
R+R+AFKL + + + + V+++ ++PG W+QVL+
Sbjct: 3 LQLRSRAAFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL---------------A 47
Query: 79 PLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFD---GCKADLVVCDGAPDVTGLH 135
I++IDLQ M I GV ++ DI + + R K D VV D V+G+
Sbjct: 48 RKIISIDLQEMEEIAGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVSDAMAKVSGIP 107
Query: 136 DMDEFVQSQLILAV 149
D V Q+ V
Sbjct: 108 SRDHAVSYQIGQRV 121
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} Length = 201 | Back alignment and structure |
|---|
Score = 170 bits (433), Expect = 2e-54
Identities = 33/146 (22%), Positives = 62/146 (42%), Gaps = 28/146 (19%)
Query: 21 WRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPL 80
+R+R+A+KL+++D ++ + K ++D+ PGSW QV+ + + ++
Sbjct: 2 YRSRAAYKLIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTK-----NYKNK------ 50
Query: 81 IVAIDLQPMAPIEGVIQVQGDIT-----------------NARTAEVVIRHFDGCKADLV 123
I+ ID + M PI V +QG+I N + K D++
Sbjct: 51 IIGIDKKIMDPIPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDYKLKEILQDKKIDII 110
Query: 124 VCDGAPDVTGLHDMDEFVQSQLILAV 149
+ D A G D +L L++
Sbjct: 111 LSDAAVPCIGNKIDDHLNSCELTLSI 136
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* Length = 277 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 7e-27
Identities = 22/142 (15%), Positives = 41/142 (28%), Gaps = 18/142 (12%)
Query: 8 KRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPA 67
+R + K +R KL E + RV+DL G W + + +
Sbjct: 42 RRHLAEGKVDTGVAVSRGTAKLRWFHERGYVKLE-GRVIDLGCGRGGWCYYAAAQKEV-- 98
Query: 68 KLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDG 127
G + D V + +I + + R K D ++CD
Sbjct: 99 -------SGVKGFTLGRDGHE--KPMNVQSLGWNIITFKDKTDIHRLEPV-KCDTLLCDI 148
Query: 128 APDVTGLHDMDEFVQSQLILAV 149
+ + + + V
Sbjct: 149 GESSS-----SSVTEGERTVRV 165
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* Length = 300 | Back alignment and structure |
|---|
Score = 78.0 bits (192), Expect = 6e-18
Identities = 19/132 (14%), Positives = 42/132 (31%), Gaps = 14/132 (10%)
Query: 8 KRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPA 67
+R + + +R A K+ + E + RV+DL G WS + +
Sbjct: 49 RRYLKEGRTDVGISVSRGAAKIRWLHERGYLRIT-GRVLDLGCGRGGWSYYAAAQ----- 102
Query: 68 KLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDG 127
+ I+ PI + +I + + + +D ++CD
Sbjct: 103 ----KEVMSVKGYTLGIEGH-EKPIHMQT-LGWNIVKFK-DKSNVFTMPTEPSDTLLCDI 155
Query: 128 APDVTGLHDMDE 139
+ ++
Sbjct: 156 GESSSN-PLVER 166
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* Length = 375 | Back alignment and structure |
|---|
Score = 57.4 bits (138), Expect = 2e-10
Identities = 25/137 (18%), Positives = 38/137 (27%), Gaps = 34/137 (24%)
Query: 12 YYRKAKEEGWRARSAFKLLQ-------IDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLY 64
R +RS KL + DE VDL A PG W+ L ++
Sbjct: 175 IPRLKFPADAPSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKR-- 232
Query: 65 LPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIRHFDGCKA 120
+ ++D PMA V ++ D R
Sbjct: 233 -NMW------------VYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTR--------SNI 271
Query: 121 DLVVCDGAPDVTGLHDM 137
+VCD + +
Sbjct: 272 SWMVCDMVEKPAKVAAL 288
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 179 | |||
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.97 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 99.95 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 99.92 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 99.91 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.9 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 99.9 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.89 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 99.88 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.81 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 99.78 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.77 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 99.77 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.77 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.75 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 99.53 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.36 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.29 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.27 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.13 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.1 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.07 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.05 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.05 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.03 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.0 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.99 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.95 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 98.94 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 98.93 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 98.92 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 98.9 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.89 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.88 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 98.87 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 98.85 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 98.85 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 98.84 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 98.83 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 98.82 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 98.82 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 98.82 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 98.82 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 98.82 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 98.81 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 98.8 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 98.79 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 98.79 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 98.78 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 98.77 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 98.77 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 98.77 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 98.76 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 98.76 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 98.75 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 98.74 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 98.74 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 98.74 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 98.73 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 98.73 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 98.73 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 98.73 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 98.73 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 98.73 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 98.72 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 98.71 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 98.71 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 98.71 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.7 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.7 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 98.7 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 98.69 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 98.69 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 98.69 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 98.69 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 98.69 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 98.68 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 98.68 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 98.68 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 98.68 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 98.68 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 98.68 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 98.67 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 98.67 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 98.67 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.67 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 98.67 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 98.66 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 98.66 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 98.66 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 98.66 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 98.66 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 98.66 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 98.65 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.65 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 98.65 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 98.65 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 98.65 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 98.65 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 98.65 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 98.65 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 98.64 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 98.64 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 98.64 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 98.64 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 98.63 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 98.63 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 98.63 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 98.63 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.63 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 98.63 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.63 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 98.63 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 98.62 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 98.62 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 98.62 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 98.61 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 98.61 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 98.61 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 98.61 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.61 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 98.6 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 98.6 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 98.6 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 98.6 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 98.59 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 98.59 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 98.59 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 98.58 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 98.58 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 98.57 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 98.57 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 98.56 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 98.56 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 98.56 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 98.56 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 98.56 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.55 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 98.55 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 98.55 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 98.55 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.54 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 98.54 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 98.54 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 98.54 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 98.53 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 98.53 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 98.52 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 98.52 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 98.51 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 98.51 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 98.51 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.5 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 98.5 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.5 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 98.49 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 98.49 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.48 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 98.48 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.48 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 98.48 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 98.48 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 98.47 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 98.47 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 98.46 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 98.46 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.46 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 98.45 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.45 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 98.45 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.45 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 98.45 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 98.43 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.43 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 98.42 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 98.42 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 98.42 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 98.42 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.41 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 98.41 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 98.41 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 98.41 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.41 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.4 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 98.39 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.39 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.39 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 98.38 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.38 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 98.38 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 98.38 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 98.38 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.38 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 98.37 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.37 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 98.37 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.37 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.36 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.36 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.35 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.35 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.35 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 98.35 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.34 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.34 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 98.33 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 98.33 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.31 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.31 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 98.29 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 98.29 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.28 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.28 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 98.28 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 98.28 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 98.27 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.27 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 98.27 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 98.26 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 98.26 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 98.26 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.25 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.23 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 98.23 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 98.22 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 98.22 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 98.21 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.2 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.2 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 98.19 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.18 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 98.18 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.17 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.17 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.17 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.15 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.15 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.15 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.15 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.15 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.15 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 98.12 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.12 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 98.11 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 98.11 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 98.1 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.1 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.1 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 98.1 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 98.08 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.08 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 98.08 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 98.07 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.04 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 98.04 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 98.04 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.04 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.02 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.02 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 98.02 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.02 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 98.01 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.01 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 97.99 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 97.98 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.95 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 97.89 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 97.85 | |
| 2hwk_A | 320 | Helicase NSP2; rossman fold, alpha/beta/alpha, mul | 97.84 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 97.83 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 97.82 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 97.81 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 97.79 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 97.77 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 97.73 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 97.71 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 97.69 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 97.63 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 97.6 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 97.57 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 97.56 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 97.55 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 97.53 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 97.42 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 97.24 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.17 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 97.1 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 96.97 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 96.96 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 96.9 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 96.59 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 96.28 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 96.22 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 96.08 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 96.07 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 95.96 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 95.9 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 95.72 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 95.51 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 95.46 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 94.95 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 94.68 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 94.51 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 94.28 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 94.15 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 93.84 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 93.81 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 93.61 | |
| 3mag_A | 307 | VP39; methylated adenine, methyltransferase, RNA C | 93.21 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 92.94 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 92.75 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 92.44 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 92.4 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 92.15 | |
| 1vpt_A | 348 | VP39; RNA CAP, poly(A) polymerase, methyltransfera | 92.1 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 91.95 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 91.73 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 91.63 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 91.47 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 91.21 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 91.15 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 90.88 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 90.75 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 90.5 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 90.36 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 90.28 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 89.99 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 89.6 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 89.54 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 89.52 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 89.44 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 89.41 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 89.4 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 89.39 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 88.99 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 88.88 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 88.47 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 88.31 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 88.15 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 88.15 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 87.89 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 87.58 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 87.52 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 87.47 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 87.35 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 87.26 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 87.13 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 87.07 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 87.06 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 86.9 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 86.87 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 86.78 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 86.57 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 86.39 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 86.37 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 86.23 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 86.12 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 86.11 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 85.97 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 85.93 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 85.79 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 85.65 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 85.56 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 85.13 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 85.08 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 84.98 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 84.93 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 84.87 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 84.87 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 84.82 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 84.74 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 84.59 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 84.58 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 84.55 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 84.5 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 84.34 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 84.14 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 83.99 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 83.88 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 83.87 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 83.87 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 83.7 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 83.68 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 83.48 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 83.31 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 83.24 | |
| 3gdg_A | 267 | Probable NADP-dependent mannitol dehydrogenase; ro | 83.24 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 83.23 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 83.22 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 82.73 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 82.7 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 82.56 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 82.53 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 82.5 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 82.21 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 82.15 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 81.85 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 81.85 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 81.83 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 81.8 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 81.78 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 81.71 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 81.71 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 81.7 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 81.68 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 81.6 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 81.58 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 81.48 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 81.47 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 81.4 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 81.3 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 81.26 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 81.24 | |
| 1jtv_A | 327 | 17 beta-hydroxysteroid dehydrogenase type 1; stero | 81.09 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 81.05 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 81.01 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 80.97 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 80.97 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 80.96 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 80.93 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 80.93 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 80.88 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 80.88 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 80.58 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 80.54 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 80.5 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 80.4 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 80.39 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 80.39 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 80.32 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 80.32 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 80.24 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 80.15 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 80.11 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 80.09 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 80.06 |
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.7e-30 Score=202.80 Aligned_cols=141 Identities=26% Similarity=0.336 Sum_probs=122.9
Q ss_pred hhCCcchhhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCeeE
Q 030299 18 EEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQ 97 (179)
Q Consensus 18 ~~~~~sRaa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~~~~v~~ 97 (179)
++|||+||+|||.||+++|.+++++.+|||||||||+||++++++ . +.|+|+|++++.+.+++++
T Consensus 2 ~~~yr~Ra~~KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~-~--------------~~V~gvD~~~~~~~~~v~~ 66 (191)
T 3dou_A 2 SLQLRSRAAFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL-A--------------RKIISIDLQEMEEIAGVRF 66 (191)
T ss_dssp --CTTSHHHHHHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT-C--------------SEEEEEESSCCCCCTTCEE
T ss_pred CCCCCCcHHHHHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc-C--------------CcEEEEeccccccCCCeEE
Confidence 689999999999999999999999999999999999999999887 3 7999999999998899999
Q ss_pred EeccccchhhHHHHHhhcC---CCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHHHHH------------------HH
Q 030299 98 VQGDITNARTAEVVIRHFD---GCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSIQFF------------------IY 156 (179)
Q Consensus 98 i~gDi~~~~~~~~l~~~~~---~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~~~~------------------~~ 156 (179)
+++|+++.++...+.+.+. .++||+|+|||+|+++|.+..|+..+..++..+|..+. ..
T Consensus 67 ~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~ 146 (191)
T 3dou_A 67 IRCDIFKETIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTN 146 (191)
T ss_dssp EECCTTSSSHHHHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHH
T ss_pred EEccccCHHHHHHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHH
Confidence 9999999877666665543 13899999999999999999999999999988887542 24
Q ss_pred HHHHHHHHhhceEEEee
Q 030299 157 ELVFCLRQLLQYVILDG 173 (179)
Q Consensus 157 ~~~~~~~~~f~~v~~~~ 173 (179)
.+++.|++.|++|.+..
T Consensus 147 ~~~~~l~~~F~~v~~~k 163 (191)
T 3dou_A 147 DFIAIWRKNFSSYKISK 163 (191)
T ss_dssp HHHHHHGGGEEEEEEEC
T ss_pred HHHHHHHHhcCEEEEEC
Confidence 67788999999999854
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.9e-28 Score=201.50 Aligned_cols=125 Identities=19% Similarity=0.174 Sum_probs=101.7
Q ss_pred CCcchhhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHH--hCCCCCCCCCCCCCCCCeEEEEe--CCCCCCC-CC
Q 030299 20 GWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRK--LYLPAKLSPDSREGDLPLIVAID--LQPMAPI-EG 94 (179)
Q Consensus 20 ~~~sRaa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~--~~~~~~~~~~~~~~~~~~VvavD--~~~~~~~-~~ 94 (179)
+|||||+|||.||++++ +++||++||||||+|||||||++++ ++. ..+.|+|+| +.||.+. +|
T Consensus 53 ~yRSRAayKL~EIdeK~-likpg~~VVDLGaAPGGWSQvAa~~~~vg~-----------V~G~vig~D~~~~P~~~~~~G 120 (269)
T 2px2_A 53 HPVSRGTAKLRWLVERR-FVQPIGKVVDLGCGRGGWSYYAATMKNVQE-----------VRGYTKGGPGHEEPMLMQSYG 120 (269)
T ss_dssp CCSSTHHHHHHHHHHTT-SCCCCEEEEEETCTTSHHHHHHTTSTTEEE-----------EEEECCCSTTSCCCCCCCSTT
T ss_pred CcccHHHHHHHHHHHcC-CCCCCCEEEEcCCCCCHHHHHHhhhcCCCC-----------ceeEEEccccccCCCcccCCC
Confidence 79999999999999998 9999999999999999999999998 420 136889999 6666655 78
Q ss_pred eeEE---ec-cccchhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHHHH----------H------
Q 030299 95 VIQV---QG-DITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSIQF----------F------ 154 (179)
Q Consensus 95 v~~i---~g-Di~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~~~----------~------ 154 (179)
+.++ +| |+++. .+.++|+|||||+|+ +|++..|+..++. ||.++ |
T Consensus 121 v~~i~~~~G~Df~~~----------~~~~~DvVLSDMAPn-SG~~~vD~~Rs~~----aL~~A~~~Lk~gG~~FvvKVFq 185 (269)
T 2px2_A 121 WNIVTMKSGVDVFYK----------PSEISDTLLCDIGES-SPSAEIEEQRTLR----ILEMVSDWLSRGPKEFCIKILC 185 (269)
T ss_dssp GGGEEEECSCCGGGS----------CCCCCSEEEECCCCC-CSCHHHHHHHHHH----HHHHHHHHHTTCCSEEEEEESC
T ss_pred ceEEEeeccCCccCC----------CCCCCCEEEeCCCCC-CCccHHHHHHHHH----HHHHHHHHhhcCCcEEEEEECC
Confidence 8555 47 99984 346899999999998 9999999988877 33332 1
Q ss_pred -----HHHHHHHHHHhhceEEE
Q 030299 155 -----IYELVFCLRQLLQYVIL 171 (179)
Q Consensus 155 -----~~~~~~~~~~~f~~v~~ 171 (179)
+..++..|++.|.+|.+
T Consensus 186 g~~~~~~~~l~~lk~~F~~vkv 207 (269)
T 2px2_A 186 PYMPKVIEKLESLQRRFGGGLV 207 (269)
T ss_dssp TTSHHHHHHHHHHHHHHCCEEE
T ss_pred CCchHHHHHHHHHHHHcCCEEE
Confidence 24556789999999875
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.9e-25 Score=184.93 Aligned_cols=132 Identities=19% Similarity=0.178 Sum_probs=101.7
Q ss_pred hCCcchhhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC---CCCCC--
Q 030299 19 EGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP---MAPIE-- 93 (179)
Q Consensus 19 ~~~~sRaa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~---~~~~~-- 93 (179)
..|||||||||.||+++| +++++.+|||||||||||+||++++.+ ...|+|+|+.. +.|++
T Consensus 69 g~YrSRAAfKL~ei~eK~-~Lk~~~~VLDLGaAPGGWsQvAa~~~g-------------v~sV~GvdvG~d~~~~pi~~~ 134 (282)
T 3gcz_A 69 GIAVSRGSAKLRWMEERG-YVKPTGIVVDLGCGRGGWSYYAASLKN-------------VKKVMAFTLGVQGHEKPIMRT 134 (282)
T ss_dssp SBCSSTHHHHHHHHHHTT-SCCCCEEEEEETCTTCHHHHHHHTSTT-------------EEEEEEECCCCTTSCCCCCCC
T ss_pred CCEecHHHHHHHHHHHhc-CCCCCCEEEEeCCCCCHHHHHHHHhcC-------------CCeeeeEEeccCccccccccc
Confidence 469999999999999998 789999999999999999999998765 36799999974 33433
Q ss_pred --C--eeEEeccccchhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHHHH-------H--------
Q 030299 94 --G--VIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSIQF-------F-------- 154 (179)
Q Consensus 94 --~--v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~~~-------~-------- 154 (179)
+ +...+.++... .++++++|+|+|||+|+ +|.+..|++.++.|+.-|.... |
T Consensus 135 ~~g~~ii~~~~~~dv~--------~l~~~~~DvVLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~py 205 (282)
T 3gcz_A 135 TLGWNLIRFKDKTDVF--------NMEVIPGDTLLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPY 205 (282)
T ss_dssp BTTGGGEEEECSCCGG--------GSCCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCC
T ss_pred cCCCceEEeeCCcchh--------hcCCCCcCEEEecCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCC
Confidence 2 32333222111 24567899999999999 9999999999888854443321 1
Q ss_pred ---HHHHHHHHHHhhceEEEee
Q 030299 155 ---IYELVFCLRQLLQYVILDG 173 (179)
Q Consensus 155 ---~~~~~~~~~~~f~~v~~~~ 173 (179)
...+++.|+++|++|.+.+
T Consensus 206 g~~~~~l~~~lk~~F~~V~~~K 227 (282)
T 3gcz_A 206 TPLIMEELSRLQLKHGGGLVRV 227 (282)
T ss_dssp SHHHHHHHHHHHHHHCCEEECC
T ss_pred CccHHHHHHHHHHhcCCEEEEc
Confidence 2468899999999999864
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.1e-24 Score=178.45 Aligned_cols=131 Identities=16% Similarity=0.213 Sum_probs=102.1
Q ss_pred CCcchhhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCC---CCCCCC---
Q 030299 20 GWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQ---PMAPIE--- 93 (179)
Q Consensus 20 ~~~sRaa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~---~~~~~~--- 93 (179)
.|||||||||.||+++ .+++++.+||||||||||||++++++.+ ...|.|+|+. ++.|.+
T Consensus 54 ~YrSRaA~KL~ei~ek-~~l~~~~~VLDLGaAPGGWSQvAa~~~~-------------~~~v~g~dVGvDl~~~pi~~~~ 119 (277)
T 3evf_A 54 VAVSRGTAKLRWFHER-GYVKLEGRVIDLGCGRGGWCYYAAAQKE-------------VSGVKGFTLGRDGHEKPMNVQS 119 (277)
T ss_dssp BCSSTHHHHHHHHHHT-TSSCCCEEEEEETCTTCHHHHHHHTSTT-------------EEEEEEECCCCTTCCCCCCCCB
T ss_pred CccccHHHHHHHHHHh-CCCCCCCEEEEecCCCCHHHHHHHHhcC-------------CCcceeEEEeccCcccccccCc
Confidence 4999999999999999 6889999999999999999999998754 2456666665 344443
Q ss_pred ---CeeEEeccccchhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHHHH------H----------
Q 030299 94 ---GVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSIQF------F---------- 154 (179)
Q Consensus 94 ---~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~~~------~---------- 154 (179)
++..+++++... .+++.++|+|+|||+|+ +|.+..|++.++.|+.-|.... |
T Consensus 120 ~g~~ii~~~~~~dv~--------~l~~~~~DlVlsD~apn-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~ 190 (277)
T 3evf_A 120 LGWNIITFKDKTDIH--------RLEPVKCDTLLCDIGES-SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPYMP 190 (277)
T ss_dssp TTGGGEEEECSCCTT--------TSCCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSH
T ss_pred CCCCeEEEeccceeh--------hcCCCCccEEEecCccC-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCc
Confidence 555666665332 25567899999999999 9999999999887744443321 1
Q ss_pred -HHHHHHHHHHhhceEEEee
Q 030299 155 -IYELVFCLRQLLQYVILDG 173 (179)
Q Consensus 155 -~~~~~~~~~~~f~~v~~~~ 173 (179)
...+++.|+++|++|.+.+
T Consensus 191 ~~~~l~~~lk~~F~~V~~~K 210 (277)
T 3evf_A 191 DVLEKLELLQRRFGGTVIRN 210 (277)
T ss_dssp HHHHHHHHHHHHHCCEEECC
T ss_pred cHHHHHHHHHHhcCCEEEEe
Confidence 3578899999999999864
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.4e-23 Score=162.10 Aligned_cols=143 Identities=25% Similarity=0.385 Sum_probs=115.6
Q ss_pred CCcchhhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCeeEEe
Q 030299 20 GWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQ 99 (179)
Q Consensus 20 ~~~sRaa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~~~~v~~i~ 99 (179)
|||+||++||.++++++.+++++.+|||||||||+|+.+++++.+. ..++|+|+|++++...+++++++
T Consensus 1 ~~~~r~~~kl~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~-----------~~~~v~gvD~s~~~~~~~v~~~~ 69 (201)
T 2plw_A 1 NYRSRAAYKLIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKN-----------YKNKIIGIDKKIMDPIPNVYFIQ 69 (201)
T ss_dssp -CCSTTHHHHHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTT-----------SCEEEEEEESSCCCCCTTCEEEE
T ss_pred CcchHHHHHHHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCC-----------CCceEEEEeCCccCCCCCceEEE
Confidence 6999999999999999999999999999999999999999998751 03799999999998778999999
Q ss_pred ccccchh-----------------hHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHHHHH--------
Q 030299 100 GDITNAR-----------------TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSIQFF-------- 154 (179)
Q Consensus 100 gDi~~~~-----------------~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~~~~-------- 154 (179)
+|+.+.+ ...++.+.+++..||+|++|+++...|.+..|+..+..+...++..+.
T Consensus 70 ~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~ 149 (201)
T 2plw_A 70 GEIGKDNMNNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGT 149 (201)
T ss_dssp CCTTTTSSCCC-----------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEE
T ss_pred ccccchhhhhhccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCE
Confidence 9998865 333444445667899999999998888888888777777666665331
Q ss_pred ----------HHHHHHHHHHhhceEEEee
Q 030299 155 ----------IYELVFCLRQLLQYVILDG 173 (179)
Q Consensus 155 ----------~~~~~~~~~~~f~~v~~~~ 173 (179)
...++..+++.|+.|.+..
T Consensus 150 lv~~~~~~~~~~~l~~~l~~~f~~v~~~~ 178 (201)
T 2plw_A 150 YIVKMYLGSQTNNLKTYLKGMFQLVHTTK 178 (201)
T ss_dssp EEEEEECSTTHHHHHHHHHTTEEEEEECC
T ss_pred EEEEEeCCCCHHHHHHHHHHHHheEEEEC
Confidence 2456677888898887653
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-23 Score=177.36 Aligned_cols=130 Identities=16% Similarity=0.159 Sum_probs=101.5
Q ss_pred hCCcchhhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---CCCC--
Q 030299 19 EGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---APIE-- 93 (179)
Q Consensus 19 ~~~~sRaa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---~~~~-- 93 (179)
-+|||||||||.|++++ ++++++.+||||||||||||++++++.+ ...|+|+|+... .|..
T Consensus 60 g~yrSRaa~KL~ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~g-------------v~sV~Gvdlg~~~~~~P~~~~ 125 (300)
T 3eld_A 60 GISVSRGAAKIRWLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKE-------------VMSVKGYTLGIEGHEKPIHMQ 125 (300)
T ss_dssp CCCSSTTHHHHHHHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTT-------------EEEEEEECCCCTTSCCCCCCC
T ss_pred CCccchHHHHHHHHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcC-------------CceeeeEEecccccccccccc
Confidence 37999999999999999 9999999999999999999999998765 357999999753 2221
Q ss_pred ----CeeEEec--cccchhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHHHH------H-------
Q 030299 94 ----GVIQVQG--DITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSIQF------F------- 154 (179)
Q Consensus 94 ----~v~~i~g--Di~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~~~------~------- 154 (179)
++..... |+. .+.+.++|+|+|||+|+ +|.+..|++.|..|+.-|.... |
T Consensus 126 ~~~~~iv~~~~~~di~----------~l~~~~~DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~ 194 (300)
T 3eld_A 126 TLGWNIVKFKDKSNVF----------TMPTEPSDTLLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAP 194 (300)
T ss_dssp BTTGGGEEEECSCCTT----------TSCCCCCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESST
T ss_pred ccCCceEEeecCceee----------ecCCCCcCEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeccc
Confidence 2222221 222 14567899999999999 9999999999999954444321 1
Q ss_pred ----HHHHHHHHHHhhceEEEee
Q 030299 155 ----IYELVFCLRQLLQYVILDG 173 (179)
Q Consensus 155 ----~~~~~~~~~~~f~~v~~~~ 173 (179)
...+++.|+++|++|.+.+
T Consensus 195 yG~~~~~ll~~lk~~F~~V~~~K 217 (300)
T 3eld_A 195 YHPDVIEKLERLQLRFGGGIVRV 217 (300)
T ss_dssp TSHHHHHHHHHHHHHHCCEEECC
T ss_pred cCccHHHHHHHHHHhCCcEEEEe
Confidence 3578899999999998864
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-22 Score=156.83 Aligned_cols=150 Identities=31% Similarity=0.470 Sum_probs=119.3
Q ss_pred CCcchhhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCeeEE-
Q 030299 20 GWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQV- 98 (179)
Q Consensus 20 ~~~sRaa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~~~~v~~i- 98 (179)
||++|+++||.++++++.+++++.+|||||||||.++..++++.+.. +.....+.++|+|+|++++...++++++
T Consensus 1 ~~~~r~~~kl~~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~----~~~~~~~~~~v~~vD~s~~~~~~~~~~~~ 76 (196)
T 2nyu_A 1 SYRSRSAFKLLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAA----GTDPSSPVGFVLGVDLLHIFPLEGATFLC 76 (196)
T ss_dssp CCSSTHHHHHHHHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTT----CCCTTSCCCEEEEECSSCCCCCTTCEEEC
T ss_pred CchhHHHHHHHHHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccc----cccccCCCceEEEEechhcccCCCCeEEE
Confidence 69999999999999999999999999999999999999999987520 0000111279999999998877899999
Q ss_pred eccccchhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHHHHH------------------HHHHHH
Q 030299 99 QGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSIQFF------------------IYELVF 160 (179)
Q Consensus 99 ~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~~~~------------------~~~~~~ 160 (179)
++|+++......+...+++++||+|++|++++.+|++..++..+..+...++..+. ...++.
T Consensus 77 ~~d~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~ 156 (196)
T 2nyu_A 77 PADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQR 156 (196)
T ss_dssp SCCTTSHHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGGGHHHHH
T ss_pred eccCCCHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCccHHHHHH
Confidence 99999876655555556666899999999999999998888777766666665431 145667
Q ss_pred HHHHhhceEEEee
Q 030299 161 CLRQLLQYVILDG 173 (179)
Q Consensus 161 ~~~~~f~~v~~~~ 173 (179)
.++..|..|.+..
T Consensus 157 ~l~~~f~~v~~~~ 169 (196)
T 2nyu_A 157 RLTEEFQNVRIIK 169 (196)
T ss_dssp HHHHHEEEEEEEC
T ss_pred HHHHHhcceEEEC
Confidence 7788888887654
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-22 Score=166.23 Aligned_cols=101 Identities=19% Similarity=0.131 Sum_probs=87.4
Q ss_pred hCCcchhhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCC------
Q 030299 19 EGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPI------ 92 (179)
Q Consensus 19 ~~~~sRaa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~~------ 92 (179)
.+||||++|||.||+++| +++++++|+||||+|||||+|++.+.+ ..+|+|+|+.++...
T Consensus 57 g~yrSRa~~KL~ei~ek~-~l~~g~~VvDLGaapGGWSq~~a~~~g-------------~~~V~avdvG~~ghe~P~~~~ 122 (267)
T 3p8z_A 57 HHAVSRGSAKLQWFVERN-MVIPEGRVIDLGCGRGGWSYYCAGLKK-------------VTEVRGYTKGGPGHEEPVPMS 122 (267)
T ss_dssp SCCSSTHHHHHHHHHHTT-SSCCCEEEEEESCTTSHHHHHHHTSTT-------------EEEEEEECCCSTTSCCCCCCC
T ss_pred CCccchHHHHHHHHHHhc-CCCCCCEEEEcCCCCCcHHHHHHHhcC-------------CCEEEEEecCCCCccCcchhh
Confidence 379999999999999999 789999999999999999999998876 358999999987422
Q ss_pred ----CCeeEEec-cccchhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHH
Q 030299 93 ----EGVIQVQG-DITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQ 144 (179)
Q Consensus 93 ----~~v~~i~g-Di~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~ 144 (179)
+.|+|.++ |++..+ ..++|+|+||++| .++....|+..+++
T Consensus 123 s~gwn~v~fk~gvDv~~~~----------~~~~DtllcDIge-Ss~~~~vE~~Rtlr 168 (267)
T 3p8z_A 123 TYGWNIVKLMSGKDVFYLP----------PEKCDTLLCDIGE-SSPSPTVEESRTIR 168 (267)
T ss_dssp CTTTTSEEEECSCCGGGCC----------CCCCSEEEECCCC-CCSCHHHHHHHHHH
T ss_pred hcCcCceEEEeccceeecC----------CccccEEEEecCC-CCCChhhhhhHHHH
Confidence 57999999 997643 3679999999999 88888888877766
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-19 Score=149.87 Aligned_cols=126 Identities=17% Similarity=0.273 Sum_probs=100.4
Q ss_pred CCcchhhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC------CCCC
Q 030299 20 GWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------APIE 93 (179)
Q Consensus 20 ~~~sRaa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~------~~~~ 93 (179)
.|+||+++||.+++++ .+++++.+|||||||||+||++++++ ++|+|+|+++| .+.+
T Consensus 54 ~~~sR~a~KL~~i~~~-~~~~~g~~VLDlGcGtG~~s~~la~~----------------~~V~gvD~s~m~~~a~~~~~~ 116 (265)
T 2oxt_A 54 LSVSRGTAKLAWMEER-GYVELTGRVVDLGCGRGGWSYYAASR----------------PHVMDVRAYTLGVGGHEVPRI 116 (265)
T ss_dssp BCSSTHHHHHHHHHHH-TSCCCCEEEEEESCTTSHHHHHHHTS----------------TTEEEEEEECCCCSSCCCCCC
T ss_pred CccchHHHHHHHHHHc-CCCCCCCEEEEeCcCCCHHHHHHHHc----------------CcEEEEECchhhhhhhhhhhh
Confidence 5899999999999999 77899999999999999999999875 36999999998 3444
Q ss_pred ------CeeEE--eccccchhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHH---HHHHH--H--HH----
Q 030299 94 ------GVIQV--QGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLI---LAVSI--Q--FF---- 154 (179)
Q Consensus 94 ------~v~~i--~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~---~~AL~--~--~~---- 154 (179)
++.++ ++|+++. ++.+||+|+||++ +.++.+..|+..++..+ ...|+ - .|
T Consensus 117 ~~~~~~~v~~~~~~~D~~~l----------~~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv 185 (265)
T 2oxt_A 117 TESYGWNIVKFKSRVDIHTL----------PVERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKV 185 (265)
T ss_dssp CCBTTGGGEEEECSCCTTTS----------CCCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred hhccCCCeEEEecccCHhHC----------CCCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence 78999 9999984 3468999999999 88888877776544422 22232 1 11
Q ss_pred -------HHHHHHHHHHhhceEEEee
Q 030299 155 -------IYELVFCLRQLLQYVILDG 173 (179)
Q Consensus 155 -------~~~~~~~~~~~f~~v~~~~ 173 (179)
+..++..+.+.|.+|.+..
T Consensus 186 ~~~~~~~~~~~l~~l~~~f~~v~~~k 211 (265)
T 2oxt_A 186 LCPYSVEVMERLSVMQRKWGGGLVRN 211 (265)
T ss_dssp SCTTSHHHHHHHHHHHHHHCCEEECC
T ss_pred CCCCChhHHHHHHHHHHHcCCEEEEE
Confidence 2377888999999988765
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-19 Score=156.63 Aligned_cols=94 Identities=24% Similarity=0.313 Sum_probs=79.9
Q ss_pred hhCCcchhhhcHHhHHHHh-------CCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC
Q 030299 18 EEGWRARSAFKLLQIDEEF-------NIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA 90 (179)
Q Consensus 18 ~~~~~sRaa~KL~eid~~~-------~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~ 90 (179)
..+.+|||+|||.|+..+| .++++|++||||||+|||||++++++ ++.|+|||+.+|.
T Consensus 181 ~~~~pSRa~lKL~Ea~~~F~~~~~~~~~l~~G~~vlDLGAaPGGWT~~l~~r---------------g~~V~aVD~~~l~ 245 (375)
T 4auk_A 181 PADAPSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKR---------------NMWVYSVDNGPMA 245 (375)
T ss_dssp CTTSSCTTHHHHHHHHHHHSCGGGHHHHSCTTCEEEEETCTTCHHHHHHHHT---------------TCEEEEECSSCCC
T ss_pred CCCCCCHHHHHHHHHHHhccchhhhhccCCCCCEEEEeCcCCCHHHHHHHHC---------------CCEEEEEEhhhcC
Confidence 3467999999999987776 35789999999999999999999987 3799999999997
Q ss_pred C----CCCeeEEeccccchhhHHHHHhhcCCCCccEEeeCCCCCCCCC
Q 030299 91 P----IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGL 134 (179)
Q Consensus 91 ~----~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~ 134 (179)
+ .++|+++++|.+..+. ...+||+|+|||+++.++.
T Consensus 246 ~~l~~~~~V~~~~~d~~~~~~--------~~~~~D~vvsDm~~~p~~~ 285 (375)
T 4auk_A 246 QSLMDTGQVTWLREDGFKFRP--------TRSNISWMVCDMVEKPAKV 285 (375)
T ss_dssp HHHHTTTCEEEECSCTTTCCC--------CSSCEEEEEECCSSCHHHH
T ss_pred hhhccCCCeEEEeCccccccC--------CCCCcCEEEEcCCCChHHh
Confidence 4 5799999999988652 3468999999999866554
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.1e-18 Score=146.15 Aligned_cols=126 Identities=18% Similarity=0.167 Sum_probs=97.0
Q ss_pred hCCcchhhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeC----CC--CC--
Q 030299 19 EGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDL----QP--MA-- 90 (179)
Q Consensus 19 ~~~~sRaa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~----~~--~~-- 90 (179)
.+|++|++|||.+++++ .++++|.+|||||||||+||++++++ +.|+|+|+ ++ +.
T Consensus 61 ~~~~sR~a~KL~~i~~~-~~~~~g~~VLDlGcG~G~~s~~la~~----------------~~V~gvD~~~~~~~~~~~~~ 123 (305)
T 2p41_A 61 HHAVSRGSAKLRWFVER-NLVTPEGKVVDLGCGRGGWSYYCGGL----------------KNVREVKGLTKGGPGHEEPI 123 (305)
T ss_dssp SCCSSTHHHHHHHHHHT-TSSCCCEEEEEETCTTSHHHHHHHTS----------------TTEEEEEEECCCSTTSCCCC
T ss_pred CCccccHHHHHHHHHHc-CCCCCCCEEEEEcCCCCHHHHHHHhc----------------CCEEEEeccccCchhHHHHH
Confidence 46899999999999999 78899999999999999999999876 36999999 33 22
Q ss_pred ---CC--CCeeEEec-cccchhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHHHH-----H-----
Q 030299 91 ---PI--EGVIQVQG-DITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSIQF-----F----- 154 (179)
Q Consensus 91 ---~~--~~v~~i~g-Di~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~~~-----~----- 154 (179)
+. +++.++++ |+++.+ ..+||+|+||++++ +|++..|+..++..+..+.+.. |
T Consensus 124 ~~~~~~~~~v~~~~~~D~~~l~----------~~~fD~V~sd~~~~-~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~ 192 (305)
T 2p41_A 124 PMSTYGWNLVRLQSGVDVFFIP----------PERCDTLLCDIGES-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL 192 (305)
T ss_dssp CCCSTTGGGEEEECSCCTTTSC----------CCCCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred HhhhcCCCCeEEEeccccccCC----------cCCCCEEEECCccc-cCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 22 57899999 888743 35899999999998 8888888765543222222211 1
Q ss_pred ------HHHHHHHHHHhhceEEEe
Q 030299 155 ------IYELVFCLRQLLQYVILD 172 (179)
Q Consensus 155 ------~~~~~~~~~~~f~~v~~~ 172 (179)
+..++..+++.|..|.+.
T Consensus 193 ~~~~~~~~~~l~~l~~~f~~v~~~ 216 (305)
T 2p41_A 193 NPYMSSVIEKMEALQRKHGGALVR 216 (305)
T ss_dssp CCCSHHHHHHHHHHHHHHCCEEEC
T ss_pred CCCCchHHHHHHHHHHHcCCEEEe
Confidence 246778889999998874
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.6e-18 Score=145.01 Aligned_cols=127 Identities=17% Similarity=0.184 Sum_probs=96.7
Q ss_pred CCcchhhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---CC----
Q 030299 20 GWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---PI---- 92 (179)
Q Consensus 20 ~~~sRaa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---~~---- 92 (179)
.||||++|||.+|++++ +++++++||||||+|||||+|++.+.+ ...|+|+|+.... |.
T Consensus 74 ~y~SR~~~KL~ei~~~~-~l~~~~~VlDLGaapGGwsq~~~~~~g-------------v~~V~avdvG~~~he~P~~~~q 139 (321)
T 3lkz_A 74 HPVSRGTAKLRWLVERR-FLEPVGKVIDLGCGRGGWCYYMATQKR-------------VQEVRGYTKGGPGHEEPQLVQS 139 (321)
T ss_dssp CCSSTHHHHHHHHHHTT-SCCCCEEEEEETCTTCHHHHHHTTCTT-------------EEEEEEECCCSTTSCCCCCCCB
T ss_pred CccchHHHHHHHHHHhc-CCCCCCEEEEeCCCCCcHHHHHHhhcC-------------CCEEEEEEcCCCCccCcchhhh
Confidence 39999999999999995 568999999999999999999998875 3589999999862 21
Q ss_pred ---CCeeEEec-cccchhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHH---HHHHHHH---H--------
Q 030299 93 ---EGVIQVQG-DITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLI---LAVSIQF---F-------- 154 (179)
Q Consensus 93 ---~~v~~i~g-Di~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~---~~AL~~~---~-------- 154 (179)
..|.+.++ |++..+ ..++|+|+||++ ..++....|+..+++.+ ...|..- |
T Consensus 140 l~w~lV~~~~~~Dv~~l~----------~~~~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY 208 (321)
T 3lkz_A 140 YGWNIVTMKSGVDVFYRP----------SECCDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPY 208 (321)
T ss_dssp TTGGGEEEECSCCTTSSC----------CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTT
T ss_pred cCCcceEEEeccCHhhCC----------CCCCCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCC
Confidence 35888887 997754 357999999999 88999888887766522 2222110 1
Q ss_pred ---HHHHHHHHHHhhceEEE
Q 030299 155 ---IYELVFCLRQLLQYVIL 171 (179)
Q Consensus 155 ---~~~~~~~~~~~f~~v~~ 171 (179)
+...+-.|++.|..+-+
T Consensus 209 ~~~v~e~l~~lq~~fgg~lv 228 (321)
T 3lkz_A 209 MPKVIEKMELLQRRYGGGLV 228 (321)
T ss_dssp SHHHHHHHHHHHHHHCCEEE
T ss_pred ChHHHHHHHHHHHHhCCEeE
Confidence 23566666777776655
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=3.6e-17 Score=123.05 Aligned_cols=141 Identities=31% Similarity=0.402 Sum_probs=111.6
Q ss_pred CCcchhhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCeeEEe
Q 030299 20 GWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQ 99 (179)
Q Consensus 20 ~~~sRaa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~~~~v~~i~ 99 (179)
+|++|++++|.++.+.+..++++.+|||+|||+|.++..++++.++ ...|+|+|++++...+++.+++
T Consensus 1 ~y~~r~~~~l~~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~------------~~~v~~~D~~~~~~~~~~~~~~ 68 (180)
T 1ej0_A 1 GLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGG------------KGRIIACDLLPMDPIVGVDFLQ 68 (180)
T ss_dssp CCSCHHHHHHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCT------------TCEEEEEESSCCCCCTTEEEEE
T ss_pred CcchhHHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCC------------CCeEEEEECccccccCcEEEEE
Confidence 6899999999999999998899999999999999999999998742 4799999999976678999999
Q ss_pred ccccchhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHHHHH------------------HHHHHHH
Q 030299 100 GDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSIQFF------------------IYELVFC 161 (179)
Q Consensus 100 gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~~~~------------------~~~~~~~ 161 (179)
+|+.+.+..+.+...+++.+||+|++++.+...+.+..++.....+....+..+. ...++..
T Consensus 69 ~d~~~~~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~ 148 (180)
T 1ej0_A 69 GDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLRE 148 (180)
T ss_dssp SCTTSHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHH
T ss_pred cccccchhhhhhhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHH
Confidence 9999876545554445667899999999888888777776655555444444321 1345566
Q ss_pred HHHhhceEEEe
Q 030299 162 LRQLLQYVILD 172 (179)
Q Consensus 162 ~~~~f~~v~~~ 172 (179)
+++.|+.+.+.
T Consensus 149 ~~~~~~~~~~~ 159 (180)
T 1ej0_A 149 IRSLFTKVKVR 159 (180)
T ss_dssp HHHHEEEEEEE
T ss_pred HHHhhhhEEee
Confidence 77788888764
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.4e-18 Score=144.02 Aligned_cols=126 Identities=22% Similarity=0.253 Sum_probs=95.7
Q ss_pred hCCcchhhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC------CCC
Q 030299 19 EGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------API 92 (179)
Q Consensus 19 ~~~~sRaa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~------~~~ 92 (179)
..|++|+++||.+++++ .+++++.+|||||||||+||++++++ ++|+|+|+++| .+.
T Consensus 61 ~~~~sR~a~KL~~i~~~-~~~~~g~~VLDlGcGtG~~s~~la~~----------------~~V~gVD~s~m~~~a~~~~~ 123 (276)
T 2wa2_A 61 GHAVSRGTAKLAWIDER-GGVELKGTVVDLGCGRGSWSYYAASQ----------------PNVREVKAYTLGTSGHEKPR 123 (276)
T ss_dssp ----CHHHHHHHHHHHT-TSCCCCEEEEEESCTTCHHHHHHHTS----------------TTEEEEEEECCCCTTSCCCC
T ss_pred CCcCchHHHHHHHHHHc-CCCCCCCEEEEeccCCCHHHHHHHHc----------------CCEEEEECchhhhhhhhchh
Confidence 35899999999999988 77789999999999999999999876 36999999998 344
Q ss_pred C------CeeEE--eccccchhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHH---HHHHH--H--HH---
Q 030299 93 E------GVIQV--QGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLI---LAVSI--Q--FF--- 154 (179)
Q Consensus 93 ~------~v~~i--~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~---~~AL~--~--~~--- 154 (179)
. ++.++ ++|+++. ++.+||+|+||++ +.++.+..|+..++..+ ...|+ - .|
T Consensus 124 ~~~~~~~~v~~~~~~~D~~~l----------~~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~ 192 (276)
T 2wa2_A 124 LVETFGWNLITFKSKVDVTKM----------EPFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVK 192 (276)
T ss_dssp CCCCTTGGGEEEECSCCGGGC----------CCCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred hhhhcCCCeEEEeccCcHhhC----------CCCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEE
Confidence 4 78999 9999873 3468999999999 88888877776554422 22232 1 11
Q ss_pred --------HHHHHHHHHHhhceEEEe
Q 030299 155 --------IYELVFCLRQLLQYVILD 172 (179)
Q Consensus 155 --------~~~~~~~~~~~f~~v~~~ 172 (179)
+..++..+.+.|..|.+.
T Consensus 193 ~~~~~~~~~~~~l~~l~~~f~~v~v~ 218 (276)
T 2wa2_A 193 VLNPYSCDVLEALMKMQARFGGGLIR 218 (276)
T ss_dssp ESCCCSHHHHHHHHHHHHHHCCEEEC
T ss_pred eCCCCchhHHHHHHHHHHHcCCEEEE
Confidence 236677888889888774
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.9e-14 Score=121.59 Aligned_cols=109 Identities=18% Similarity=0.111 Sum_probs=86.0
Q ss_pred CCCCEEEEEcc------CCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCeeEEeccccchhhHHHHHh
Q 030299 40 EGVKRVVDLCA------APGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 40 ~~g~~VlDLga------gpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
.-|++|||||| +||+| ++.+. .+ .++.|+++|+.|+....++ +++||.+...
T Consensus 108 p~gmrVLDLGA~s~kg~APGS~--VLr~~-~p-----------~g~~VVavDL~~~~sda~~-~IqGD~~~~~------- 165 (344)
T 3r24_A 108 PYNMRVIHFGAGSDKGVAPGTA--VLRQW-LP-----------TGTLLVDSDLNDFVSDADS-TLIGDCATVH------- 165 (344)
T ss_dssp CTTCEEEEESCCCTTSBCHHHH--HHHHH-SC-----------TTCEEEEEESSCCBCSSSE-EEESCGGGEE-------
T ss_pred cCCCEEEeCCCCCCCCCCCcHH--HHHHh-CC-----------CCcEEEEeeCcccccCCCe-EEEccccccc-------
Confidence 34899999997 99994 44444 42 1369999999999876675 5999987643
Q ss_pred hcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHHHHH---------H--------HHHHHHHHHhhceEEEe
Q 030299 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSIQFF---------I--------YELVFCLRQLLQYVILD 172 (179)
Q Consensus 114 ~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~~~~---------~--------~~~~~~~~~~f~~v~~~ 172 (179)
.+.+||+|+|||+|+.+|+.+.++..+..|++.||.++- + ...++.+.+.|++|.+-
T Consensus 166 --~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg~~~L~~lrk~F~~VK~f 239 (344)
T 3r24_A 166 --TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGHFSWWTAF 239 (344)
T ss_dssp --ESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHTTEEEEEEE
T ss_pred --cCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCCHHHHHHHHhhCCeEEEE
Confidence 247899999999999999988888778889988888652 1 45678888999999864
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.36 E-value=9.6e-13 Score=107.64 Aligned_cols=92 Identities=16% Similarity=0.127 Sum_probs=71.7
Q ss_pred CCcchhhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------
Q 030299 20 GWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------- 90 (179)
Q Consensus 20 ~~~sRaa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------- 90 (179)
-++++.+-+|++..+.+. +++|++|||||||||++|.++++.+++ .++|+|+|+++..
T Consensus 56 ~~~skla~~ll~~l~~~~-l~~g~~VLDlG~GtG~~t~~la~~v~~------------~G~V~avD~s~~~l~~l~~~a~ 122 (232)
T 3id6_C 56 AFRSKLAGAILKGLKTNP-IRKGTKVLYLGAASGTTISHVSDIIEL------------NGKAYGVEFSPRVVRELLLVAQ 122 (232)
T ss_dssp TTTCHHHHHHHTTCSCCS-CCTTCEEEEETCTTSHHHHHHHHHHTT------------TSEEEEEECCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhcC-CCCCCEEEEEeecCCHHHHHHHHHhCC------------CCEEEEEECcHHHHHHHHHHhh
Confidence 368888888876544343 489999999999999999999999874 6899999999831
Q ss_pred CCCCeeEEeccccchhhHHHHHhhcCCCCccEEeeCCCC
Q 030299 91 PIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 91 ~~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
...|+.++++|++.++... .+ .+.||+|++|+++
T Consensus 123 ~r~nv~~i~~Da~~~~~~~----~~-~~~~D~I~~d~a~ 156 (232)
T 3id6_C 123 RRPNIFPLLADARFPQSYK----SV-VENVDVLYVDIAQ 156 (232)
T ss_dssp HCTTEEEEECCTTCGGGTT----TT-CCCEEEEEECCCC
T ss_pred hcCCeEEEEcccccchhhh----cc-ccceEEEEecCCC
Confidence 2369999999998764311 12 3589999999874
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=4.3e-12 Score=106.96 Aligned_cols=110 Identities=19% Similarity=0.141 Sum_probs=82.1
Q ss_pred CCCCCCEEEEEcc------CCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCeeE-EeccccchhhHHH
Q 030299 38 IFEGVKRVVDLCA------APGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQ-VQGDITNARTAEV 110 (179)
Q Consensus 38 ll~~g~~VlDLga------gpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~~~~v~~-i~gDi~~~~~~~~ 110 (179)
.+++|.+|||||| |||+ .+++++.+. .++|+|+|+++. ++++++ +++|+++.+
T Consensus 60 ~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~------------~~~V~gvDis~~--v~~v~~~i~gD~~~~~---- 119 (290)
T 2xyq_A 60 AVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPT------------GTLLVDSDLNDF--VSDADSTLIGDCATVH---- 119 (290)
T ss_dssp CCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCT------------TCEEEEEESSCC--BCSSSEEEESCGGGCC----
T ss_pred CCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCC------------CCEEEEEECCCC--CCCCEEEEECccccCC----
Confidence 3588999999999 7788 777777753 589999999998 679999 999999864
Q ss_pred HHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHHHHH------------------HHHHHHHHHHh-hceEEE
Q 030299 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSIQFF------------------IYELVFCLRQL-LQYVIL 171 (179)
Q Consensus 111 l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~~~~------------------~~~~~~~~~~~-f~~v~~ 171 (179)
+ ..+||+|+||+.++.+|.+..++..+..++..++..+. ...+...+++. |+.|.+
T Consensus 120 ----~-~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~l~~~GF~~v~~ 194 (290)
T 2xyq_A 120 ----T-ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGHFSWWTAFV 194 (290)
T ss_dssp ----C-SSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHTTEEEEEEEE
T ss_pred ----c-cCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHHHHHcCCcEEEE
Confidence 2 25799999999998889888776555555555554321 14566778888 888887
Q ss_pred e
Q 030299 172 D 172 (179)
Q Consensus 172 ~ 172 (179)
.
T Consensus 195 ~ 195 (290)
T 2xyq_A 195 T 195 (290)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.1e-11 Score=102.83 Aligned_cols=92 Identities=18% Similarity=0.186 Sum_probs=70.3
Q ss_pred hCCcchhhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-C-----CC
Q 030299 19 EGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-A-----PI 92 (179)
Q Consensus 19 ~~~~sRaa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-~-----~~ 92 (179)
..|.||+++||.++.+.+.+-.+|.+|||||||||++|..++++ + ..+|+|+|+++. - ..
T Consensus 63 ~~yvsrg~~Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~-g-------------a~~V~aVDvs~~mL~~a~r~~ 128 (291)
T 3hp7_A 63 LRYVSRGGLKLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQN-G-------------AKLVYAVDVGTNQLVWKLRQD 128 (291)
T ss_dssp CCSSSTTHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-T-------------CSEEEEECSSSSCSCHHHHTC
T ss_pred cccccchHHHHHHHHHhcCCCccccEEEecCCCccHHHHHHHhC-C-------------CCEEEEEECCHHHHHHHHHhC
Confidence 46999999999999999988678899999999999999999887 3 369999999983 2 12
Q ss_pred CCeeEE-eccccchhhHHHHHhhcCCCCccEEeeCCCC
Q 030299 93 EGVIQV-QGDITNARTAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 93 ~~v~~i-~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
+.+... ..|+..... ..++...||+|++|.++
T Consensus 129 ~rv~~~~~~ni~~l~~-----~~l~~~~fD~v~~d~sf 161 (291)
T 3hp7_A 129 DRVRSMEQYNFRYAEP-----VDFTEGLPSFASIDVSF 161 (291)
T ss_dssp TTEEEECSCCGGGCCG-----GGCTTCCCSEEEECCSS
T ss_pred cccceecccCceecch-----hhCCCCCCCEEEEEeeH
Confidence 444333 456655432 12444459999999875
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.7e-10 Score=94.49 Aligned_cols=73 Identities=16% Similarity=0.117 Sum_probs=61.0
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CCCCCeeEEeccccchhhHH
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~~~~~v~~i~gDi~~~~~~~ 109 (179)
++||++|||||||+|.++.++++.+++ .++|+|+|+++. ...+|+..+.+|..+++..
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~------------~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~- 141 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGP------------RGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKY- 141 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCT------------TCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGG-
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCC------------CceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCcccc-
Confidence 599999999999999999999999975 799999999982 2357999999999887532
Q ss_pred HHHhhcCCCCccEEeeCCC
Q 030299 110 VVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~ 128 (179)
.+....+|+|++|..
T Consensus 142 ----~~~~~~vDvVf~d~~ 156 (233)
T 4df3_A 142 ----RHLVEGVDGLYADVA 156 (233)
T ss_dssp ----TTTCCCEEEEEECCC
T ss_pred ----ccccceEEEEEEecc
Confidence 123468999999865
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.10 E-value=3e-10 Score=95.91 Aligned_cols=76 Identities=20% Similarity=0.206 Sum_probs=62.9
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
++|.+|||+|||||++|..++++++. .+.|+|+|+++.. .+++++++++|+.+...
T Consensus 117 ~~g~~VLDlg~G~G~~t~~la~~~~~------------~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~- 183 (315)
T 1ixk_A 117 KPGEIVADMAAAPGGKTSYLAQLMRN------------DGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGE- 183 (315)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTTT------------CSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGG-
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCC------------CCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhccc-
Confidence 67899999999999999999998753 5899999999831 34689999999988642
Q ss_pred HHHHhhcCCCCccEEeeCCCCCCCCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGAPDVTGLH 135 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~~~~g~~ 135 (179)
. ...||+|++|.+|+..|..
T Consensus 184 ------~-~~~fD~Il~d~Pcsg~g~~ 203 (315)
T 1ixk_A 184 ------L-NVEFDKILLDAPCTGSGTI 203 (315)
T ss_dssp ------G-CCCEEEEEEECCTTSTTTC
T ss_pred ------c-cccCCEEEEeCCCCCcccc
Confidence 1 3579999999998888864
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.9e-10 Score=101.63 Aligned_cols=76 Identities=22% Similarity=0.166 Sum_probs=62.4
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~~ 109 (179)
+|.+|||+|||||++|..++++++. .+.|+|+|+++.. .+.++.++++|+.+...
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~------------~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~-- 182 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNN------------EGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGA-- 182 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTT------------CSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHH--
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCC------------CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhh--
Confidence 8899999999999999999999853 5899999999831 35689999999987542
Q ss_pred HHHhhcCCCCccEEeeCCCCCCCCCC
Q 030299 110 VVIRHFDGCKADLVVCDGAPDVTGLH 135 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~~~~~g~~ 135 (179)
.....||.|++|.+|+..|..
T Consensus 183 -----~~~~~fD~Il~D~PcSg~G~~ 203 (479)
T 2frx_A 183 -----AVPEMFDAILLDAPCSGEGVV 203 (479)
T ss_dssp -----HSTTCEEEEEEECCCCCGGGG
T ss_pred -----hccccCCEEEECCCcCCcccc
Confidence 123579999999998877763
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.05 E-value=2.5e-10 Score=101.57 Aligned_cols=78 Identities=26% Similarity=0.344 Sum_probs=63.7
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
++|.+|||+|||||++|..++++++. .+.|+|+|+++.. .+.++.++++|..+...
T Consensus 104 ~~g~~VLDlcaGpGgkt~~lA~~~~~------------~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~- 170 (456)
T 3m4x_A 104 KPGEKVLDLCAAPGGKSTQLAAQMKG------------KGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVP- 170 (456)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTT------------CSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHH-
T ss_pred CCCCEEEEECCCcCHHHHHHHHHcCC------------CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhh-
Confidence 67899999999999999999999863 5899999999831 35678888999877532
Q ss_pred HHHHhhcCCCCccEEeeCCCCCCCCCCc
Q 030299 109 EVVIRHFDGCKADLVVCDGAPDVTGLHD 136 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~~~~g~~~ 136 (179)
.+ .+.||+|++|.+|+..|.+.
T Consensus 171 -----~~-~~~FD~Il~DaPCSg~G~~r 192 (456)
T 3m4x_A 171 -----HF-SGFFDRIVVDAPCSGEGMFR 192 (456)
T ss_dssp -----HH-TTCEEEEEEECCCCCGGGTT
T ss_pred -----hc-cccCCEEEECCCCCCccccc
Confidence 12 35899999999999888743
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.05 E-value=4e-10 Score=95.45 Aligned_cols=78 Identities=21% Similarity=0.210 Sum_probs=60.1
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
++|.+|||+|||||++|..+++.++. .++|+|+|+++.. .+.+++++++|+.+....
T Consensus 101 ~~g~~VLDlcaG~G~kt~~la~~~~~------------~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~ 168 (309)
T 2b9e_A 101 PPGSHVIDACAAPGNKTSHLAALLKN------------QGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPS 168 (309)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTT------------CSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTT
T ss_pred CCCCEEEEeCCChhHHHHHHHHHhCC------------CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCcc
Confidence 67899999999999999999998853 5899999999831 346899999999875321
Q ss_pred HHHHhhcC-CCCccEEeeCCCCCCCCCC
Q 030299 109 EVVIRHFD-GCKADLVVCDGAPDVTGLH 135 (179)
Q Consensus 109 ~~l~~~~~-~~~~D~VlsD~~~~~~g~~ 135 (179)
.. ...||.|++|.+|+.+|.+
T Consensus 169 ------~~~~~~fD~Vl~D~PcSg~G~~ 190 (309)
T 2b9e_A 169 ------DPRYHEVHYILLDPSCSGSGMP 190 (309)
T ss_dssp ------CGGGTTEEEEEECCCCCC----
T ss_pred ------ccccCCCCEEEEcCCcCCCCCC
Confidence 00 1469999999999988874
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.8e-10 Score=90.86 Aligned_cols=91 Identities=19% Similarity=0.162 Sum_probs=68.1
Q ss_pred CCcchhhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----C----
Q 030299 20 GWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----A---- 90 (179)
Q Consensus 20 ~~~sRaa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----~---- 90 (179)
.++++.+.++.+..+.+. ++++.+|||+|||+|.++..++++.++ .++|+|+|+++. .
T Consensus 57 ~~~~~~~~~~~~~l~~~~-~~~~~~vLDlG~G~G~~~~~la~~~g~------------~~~v~gvD~s~~~i~~~~~~a~ 123 (233)
T 2ipx_A 57 PFRSKLAAAILGGVDQIH-IKPGAKVLYLGAASGTTVSHVSDIVGP------------DGLVYAVEFSHRSGRDLINLAK 123 (233)
T ss_dssp TTTCHHHHHHHTTCSCCC-CCTTCEEEEECCTTSHHHHHHHHHHCT------------TCEEEEECCCHHHHHHHHHHHH
T ss_pred ccchhHHHHHHhHHheec-CCCCCEEEEEcccCCHHHHHHHHHhCC------------CcEEEEEECCHHHHHHHHHHhh
Confidence 356777777765433443 478899999999999999999999743 479999999962 1
Q ss_pred CCCCeeEEeccccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 91 PIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 91 ~~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
..++++++++|+.+..... +....||+|++|.+
T Consensus 124 ~~~~v~~~~~d~~~~~~~~-----~~~~~~D~V~~~~~ 156 (233)
T 2ipx_A 124 KRTNIIPVIEDARHPHKYR-----MLIAMVDVIFADVA 156 (233)
T ss_dssp HCTTEEEECSCTTCGGGGG-----GGCCCEEEEEECCC
T ss_pred ccCCeEEEEcccCChhhhc-----ccCCcEEEEEEcCC
Confidence 1378999999998853210 22468999999875
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.00 E-value=5.4e-10 Score=92.22 Aligned_cols=80 Identities=18% Similarity=0.251 Sum_probs=59.1
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
++|.+|||+|||||++|..+++.++. .+.|+|+|+++.. ..++++++++|+.+....
T Consensus 82 ~~g~~VLDlgaG~G~~t~~la~~~~~------------~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~ 149 (274)
T 3ajd_A 82 REDDFILDMCAAPGGKTTHLAQLMKN------------KGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDY 149 (274)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHHTTT------------CSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHH
T ss_pred CCcCEEEEeCCCccHHHHHHHHHcCC------------CCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchh
Confidence 57899999999999999999998752 4899999999831 245899999999875421
Q ss_pred HHHHhhcCCCCccEEeeCCCCCCCCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGAPDVTGLH 135 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~~~~g~~ 135 (179)
+. .....||+|++|.+++..|.+
T Consensus 150 --~~--~~~~~fD~Vl~d~Pcs~~g~~ 172 (274)
T 3ajd_A 150 --LL--KNEIFFDKILLDAPCSGNIIK 172 (274)
T ss_dssp --HH--HTTCCEEEEEEEECCC-----
T ss_pred --hh--hccccCCEEEEcCCCCCCccc
Confidence 00 023579999999988877764
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=3.2e-10 Score=101.13 Aligned_cols=76 Identities=22% Similarity=0.232 Sum_probs=61.6
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
++|.+|||+|||||++|..++++++. .+.|+|+|+++.. .+. +.++++|+++...
T Consensus 100 ~~g~~VLDlgaGpG~kt~~LA~~~~~------------~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~- 165 (464)
T 3m6w_A 100 KPGERVLDLAAAPGGKTTHLAARMGG------------KGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAE- 165 (464)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHTTT------------CSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHH-
T ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCC------------CCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhh-
Confidence 67899999999999999999999863 5899999999831 244 8888999877532
Q ss_pred HHHHhhcCCCCccEEeeCCCCCCCCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGAPDVTGLH 135 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~~~~g~~ 135 (179)
.+ .+.||+|++|.+|+.+|..
T Consensus 166 -----~~-~~~FD~Il~D~PcSg~G~~ 186 (464)
T 3m6w_A 166 -----AF-GTYFHRVLLDAPCSGEGMF 186 (464)
T ss_dssp -----HH-CSCEEEEEEECCCCCGGGT
T ss_pred -----hc-cccCCEEEECCCcCCcccc
Confidence 12 3589999999999888764
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.3e-09 Score=96.18 Aligned_cols=78 Identities=28% Similarity=0.233 Sum_probs=63.6
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
++|.+|||+|||||++|..+++.++. .+.|+|+|+++.. .+.++.++++|+.+...
T Consensus 258 ~~g~~VLDlgaG~G~~t~~la~~~~~------------~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~- 324 (450)
T 2yxl_A 258 KPGETVVDLAAAPGGKTTHLAELMKN------------KGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPE- 324 (450)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHTTT------------CSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSS-
T ss_pred CCcCEEEEeCCCccHHHHHHHHHcCC------------CCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcch-
Confidence 67899999999999999999998852 4899999999831 35689999999987531
Q ss_pred HHHHhhcCCCCccEEeeCCCCCCCCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGAPDVTGLH 135 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~~~~g~~ 135 (179)
.+++..||+|++|.+|+..|.+
T Consensus 325 -----~~~~~~fD~Vl~D~Pcsg~g~~ 346 (450)
T 2yxl_A 325 -----IIGEEVADKVLLDAPCTSSGTI 346 (450)
T ss_dssp -----SSCSSCEEEEEEECCCCCGGGT
T ss_pred -----hhccCCCCEEEEcCCCCCCeee
Confidence 1344679999999999888864
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=98.94 E-value=1.3e-09 Score=86.78 Aligned_cols=71 Identities=23% Similarity=0.194 Sum_probs=55.8
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----C----CCCCeeEEeccccchhhHH
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----A----PIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----~----~~~~v~~i~gDi~~~~~~~ 109 (179)
+++|.+|||||||||.++..++++.+ .+.|+|+|+++. . ...|+.++.+|+.+....
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~-------------~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~- 120 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVD-------------EGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKY- 120 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTT-------------TSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGT-
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcC-------------CCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhh-
Confidence 47899999999999999999999875 479999999982 1 246899999999875310
Q ss_pred HHHhhcCCCCccEEeeCC
Q 030299 110 VVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~ 127 (179)
..+. +.||+|+++.
T Consensus 121 ---~~~~-~~fD~V~~~~ 134 (210)
T 1nt2_A 121 ---SGIV-EKVDLIYQDI 134 (210)
T ss_dssp ---TTTC-CCEEEEEECC
T ss_pred ---cccc-cceeEEEEec
Confidence 0123 5899999985
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=98.93 E-value=4.9e-09 Score=81.05 Aligned_cols=72 Identities=17% Similarity=0.181 Sum_probs=57.9
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNAR 106 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~ 106 (179)
++++.+|||+|||+|.++..++++.++ .+.|+|+|+++.. .. ++++++++|+.+..
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~------------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 87 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGE------------NGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMD 87 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCT------------TCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGG
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCC------------CCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHh
Confidence 478899999999999999999999753 4799999999831 12 57999999998764
Q ss_pred hHHHHHhhcCCCCccEEeeCCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
. +.+++||+|+++.+.
T Consensus 88 ~-------~~~~~fD~v~~~~~~ 103 (197)
T 3eey_A 88 K-------YIDCPVKAVMFNLGY 103 (197)
T ss_dssp G-------TCCSCEEEEEEEESB
T ss_pred h-------hccCCceEEEEcCCc
Confidence 2 234689999999753
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.8e-09 Score=88.89 Aligned_cols=67 Identities=13% Similarity=0.071 Sum_probs=55.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----CCCCCeeEEeccccchhhHHHHHhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----APIEGVIQVQGDITNARTAEVVIRH 114 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----~~~~~v~~i~gDi~~~~~~~~l~~~ 114 (179)
..+.+|||||||+|.++..++++. .+|+|+|+++. ...+++.++++|+.+.+
T Consensus 38 ~~~~~vLDvGcGtG~~~~~l~~~~---------------~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~-------- 94 (257)
T 4hg2_A 38 PARGDALDCGCGSGQASLGLAEFF---------------ERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTG-------- 94 (257)
T ss_dssp SCSSEEEEESCTTTTTHHHHHTTC---------------SEEEEEESCHHHHHTCCCCTTEEEEECCTTCCC--------
T ss_pred CCCCCEEEEcCCCCHHHHHHHHhC---------------CEEEEEeCcHHhhhhhhhcCCceeehhhhhhhc--------
Confidence 456799999999999999998763 68999999982 24679999999998875
Q ss_pred cCCCCccEEeeCCCC
Q 030299 115 FDGCKADLVVCDGAP 129 (179)
Q Consensus 115 ~~~~~~D~VlsD~~~ 129 (179)
++++.||+|++..+.
T Consensus 95 ~~~~sfD~v~~~~~~ 109 (257)
T 4hg2_A 95 LPPASVDVAIAAQAM 109 (257)
T ss_dssp CCSSCEEEEEECSCC
T ss_pred ccCCcccEEEEeeeh
Confidence 567899999996643
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.3e-09 Score=87.00 Aligned_cols=57 Identities=21% Similarity=0.324 Sum_probs=50.5
Q ss_pred hCCcchhhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC
Q 030299 19 EGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (179)
Q Consensus 19 ~~~~sRaa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~ 89 (179)
..|.||+.+||..+.+.+.+-.++.+|||||||+|+++..++++ + ..+|+|+|+++.
T Consensus 15 ~~yvsrg~~kL~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~-g-------------~~~V~gvDis~~ 71 (232)
T 3opn_A 15 LRYVSRGGLKLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQN-G-------------AKLVYALDVGTN 71 (232)
T ss_dssp CCSSSTTHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-T-------------CSEEEEECSSCC
T ss_pred CCccCCcHHHHHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhc-C-------------CCEEEEEcCCHH
Confidence 46999999999999999987667889999999999999999987 3 259999999983
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=2.2e-09 Score=92.92 Aligned_cols=93 Identities=25% Similarity=0.202 Sum_probs=68.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------------CCCCeeEEeccc
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------------PIEGVIQVQGDI 102 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------------~~~~v~~i~gDi 102 (179)
+||++|||+||||||.|..+++.+. .+.|+|+|+++.. ...++.....|.
T Consensus 147 ~pg~~VLD~CAaPGGKT~~la~~~~-------------~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~ 213 (359)
T 4fzv_A 147 QPGDIVLDLCAAPGGKTLALLQTGC-------------CRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDG 213 (359)
T ss_dssp CTTEEEEESSCTTCHHHHHHHHTTC-------------EEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCG
T ss_pred CCCCEEEEecCCccHHHHHHHHhcC-------------CCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCch
Confidence 6799999999999999999998764 4789999999831 013677778887
Q ss_pred cchhhHHHHHhhcCCCCccEEeeCCCCCCCCCC----ccc-------------HHHHHHHHHHHHHH
Q 030299 103 TNARTAEVVIRHFDGCKADLVVCDGAPDVTGLH----DMD-------------EFVQSQLILAVSIQ 152 (179)
Q Consensus 103 ~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~----~~d-------------~~~q~~L~~~AL~~ 152 (179)
+.... .....||.||.|.+|+.+|.+ +.+ ..+|.+|+..|+..
T Consensus 214 ~~~~~-------~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~ 273 (359)
T 4fzv_A 214 RKWGE-------LEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLA 273 (359)
T ss_dssp GGHHH-------HSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHT
T ss_pred hhcch-------hccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhc
Confidence 76532 234689999999999876321 111 24577777777763
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.88 E-value=5.1e-09 Score=91.71 Aligned_cols=77 Identities=22% Similarity=0.248 Sum_probs=61.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----------CCCeeEEeccccchhhHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----------IEGVIQVQGDITNARTAE 109 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~----------~~~v~~i~gDi~~~~~~~ 109 (179)
++|.+|||+|||||++|..+++.++ .+.|+|+|+++..- -.++.++++|+.+...
T Consensus 245 ~~g~~VLDlgaG~G~~t~~la~~~~-------------~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~-- 309 (429)
T 1sqg_A 245 QNGEHILDLCAAPGGKTTHILEVAP-------------EAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQ-- 309 (429)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHCT-------------TCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHH--
T ss_pred CCcCeEEEECCCchHHHHHHHHHcC-------------CCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchh--
Confidence 6789999999999999999999875 48999999998520 1247888999988642
Q ss_pred HHHhhcCCCCccEEeeCCCCCCCCCC
Q 030299 110 VVIRHFDGCKADLVVCDGAPDVTGLH 135 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~~~~~g~~ 135 (179)
.+++..||+|++|.+|+..|..
T Consensus 310 ----~~~~~~fD~Vl~D~Pcsg~g~~ 331 (429)
T 1sqg_A 310 ----WCGEQQFDRILLDAPCSATGVI 331 (429)
T ss_dssp ----HHTTCCEEEEEEECCCCCGGGT
T ss_pred ----hcccCCCCEEEEeCCCCccccc
Confidence 1344689999999999888764
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.87 E-value=4.1e-09 Score=85.60 Aligned_cols=81 Identities=17% Similarity=0.186 Sum_probs=62.9
Q ss_pred hcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCe
Q 030299 27 FKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGV 95 (179)
Q Consensus 27 ~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~~~v 95 (179)
-.+.++......+.++.+|||||||+|.++..++++.+ ...|+|+|+++. ...+++
T Consensus 23 ~~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-------------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~ 89 (276)
T 3mgg_A 23 ETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNP-------------DAEITSIDISPESLEKARENTEKNGIKNV 89 (276)
T ss_dssp CHHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCT-------------TSEEEEEESCHHHHHHHHHHHHHTTCCSE
T ss_pred HHHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCC-------------CCEEEEEECCHHHHHHHHHHHHHcCCCCc
Confidence 33444444444568899999999999999999999864 579999999983 124689
Q ss_pred eEEeccccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 96 IQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 96 ~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
.++++|+.+.+ +++++||+|++...
T Consensus 90 ~~~~~d~~~~~--------~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 90 KFLQANIFSLP--------FEDSSFDHIFVCFV 114 (276)
T ss_dssp EEEECCGGGCC--------SCTTCEEEEEEESC
T ss_pred EEEEcccccCC--------CCCCCeeEEEEech
Confidence 99999999864 35678999999764
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=4.9e-09 Score=86.36 Aligned_cols=68 Identities=26% Similarity=0.238 Sum_probs=55.1
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------C-CCCCeeEEeccccchh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------A-PIEGVIQVQGDITNAR 106 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~-~~~~v~~i~gDi~~~~ 106 (179)
+++|.+|||||||+|.++..++++.+. ++.+|+|+|+++. . ...+|+++++|+.+.+
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~-----------~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~ 136 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHH-----------DNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA 136 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCS-----------SSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCC
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCC-----------CCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccc
Confidence 689999999999999999999998752 2579999999982 0 1247999999998854
Q ss_pred hHHHHHhhcCCCCccEEeeCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~ 127 (179)
.+.+|+|++..
T Consensus 137 ----------~~~~d~v~~~~ 147 (261)
T 4gek_A 137 ----------IENASMVVLNF 147 (261)
T ss_dssp ----------CCSEEEEEEES
T ss_pred ----------ccccccceeee
Confidence 24699999864
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.85 E-value=6.3e-09 Score=84.44 Aligned_cols=66 Identities=18% Similarity=0.121 Sum_probs=54.7
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----CCCCCeeEEeccccchhhHHHHHhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----APIEGVIQVQGDITNARTAEVVIRH 114 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----~~~~~v~~i~gDi~~~~~~~~l~~~ 114 (179)
.++.+|||||||+|.|+..+++. ...|+|+|+++. ....+++++++|+.+.+
T Consensus 33 ~~~~~vLDiGcG~G~~~~~l~~~---------------~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~-------- 89 (261)
T 3ege_A 33 PKGSVIADIGAGTGGYSVALANQ---------------GLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLA-------- 89 (261)
T ss_dssp CTTCEEEEETCTTSHHHHHHHTT---------------TCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCC--------
T ss_pred CCCCEEEEEcCcccHHHHHHHhC---------------CCEEEEEeCCHHHHHHHHhccCCEEEECchhhCC--------
Confidence 67899999999999999999872 479999999983 12348999999998864
Q ss_pred cCCCCccEEeeCCC
Q 030299 115 FDGCKADLVVCDGA 128 (179)
Q Consensus 115 ~~~~~~D~VlsD~~ 128 (179)
+++++||+|++...
T Consensus 90 ~~~~~fD~v~~~~~ 103 (261)
T 3ege_A 90 LPDKSVDGVISILA 103 (261)
T ss_dssp SCTTCBSEEEEESC
T ss_pred CCCCCEeEEEEcch
Confidence 45678999999765
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=3.4e-09 Score=81.19 Aligned_cols=68 Identities=18% Similarity=0.139 Sum_probs=54.3
Q ss_pred CCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchh
Q 030299 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNAR 106 (179)
Q Consensus 38 ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~ 106 (179)
.++++.+|||+|||+|.++..++++ + .+|+|+|+++.. ..++++++++|..+..
T Consensus 19 ~~~~~~~vLDiGcG~G~~~~~la~~-~--------------~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~ 83 (185)
T 3mti_A 19 VLDDESIVVDATMGNGNDTAFLAGL-S--------------KKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLD 83 (185)
T ss_dssp TCCTTCEEEESCCTTSHHHHHHHTT-S--------------SEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGG
T ss_pred hCCCCCEEEEEcCCCCHHHHHHHHh-C--------------CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHH
Confidence 3578999999999999999999887 3 799999999831 2468999998877643
Q ss_pred hHHHHHhhcCCCCccEEeeCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~ 127 (179)
. +.+++||+|+++.
T Consensus 84 ~-------~~~~~fD~v~~~~ 97 (185)
T 3mti_A 84 H-------YVREPIRAAIFNL 97 (185)
T ss_dssp G-------TCCSCEEEEEEEE
T ss_pred h-------hccCCcCEEEEeC
Confidence 1 2356899999884
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.83 E-value=8.8e-09 Score=80.59 Aligned_cols=79 Identities=16% Similarity=0.175 Sum_probs=61.6
Q ss_pred HHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeE
Q 030299 29 LLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQ 97 (179)
Q Consensus 29 L~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~ 97 (179)
...+.+... +.++.+|||+|||+|.++..++++.++ ...|+|+|+++.. ..+++++
T Consensus 26 ~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~------------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~ 92 (219)
T 3dh0_A 26 PEKVLKEFG-LKEGMTVLDVGTGAGFYLPYLSKMVGE------------KGKVYAIDVQEEMVNYAWEKVNKLGLKNVEV 92 (219)
T ss_dssp HHHHHHHHT-CCTTCEEEESSCTTCTTHHHHHHHHTT------------TCEEEEEESCHHHHHHHHHHHHHHTCTTEEE
T ss_pred HHHHHHHhC-CCCCCEEEEEecCCCHHHHHHHHHhCC------------CcEEEEEECCHHHHHHHHHHHHHcCCCcEEE
Confidence 334444444 377889999999999999999998743 5799999999831 2458999
Q ss_pred EeccccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 98 VQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 98 i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
+++|+.+.+ +++.+||+|++...
T Consensus 93 ~~~d~~~~~--------~~~~~fD~v~~~~~ 115 (219)
T 3dh0_A 93 LKSEENKIP--------LPDNTVDFIFMAFT 115 (219)
T ss_dssp EECBTTBCS--------SCSSCEEEEEEESC
T ss_pred EecccccCC--------CCCCCeeEEEeehh
Confidence 999998864 35678999999764
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.3e-08 Score=81.57 Aligned_cols=69 Identities=23% Similarity=0.325 Sum_probs=56.0
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCC-CeeEEeccccchh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNAR 106 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~-~v~~i~gDi~~~~ 106 (179)
++++.+|||||||+|.++..++++.+ ..|+|+|+++.. .++ +++++++|+.+.+
T Consensus 44 ~~~~~~vLDiG~G~G~~~~~l~~~~~--------------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 109 (257)
T 3f4k_A 44 LTDDAKIADIGCGTGGQTLFLADYVK--------------GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLP 109 (257)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHCC--------------SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCS
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHhCC--------------CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCC
Confidence 46788999999999999999999864 499999999831 223 3999999998764
Q ss_pred hHHHHHhhcCCCCccEEeeCCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
+++++||+|++....
T Consensus 110 --------~~~~~fD~v~~~~~l 124 (257)
T 3f4k_A 110 --------FQNEELDLIWSEGAI 124 (257)
T ss_dssp --------SCTTCEEEEEEESCS
T ss_pred --------CCCCCEEEEEecChH
Confidence 355789999998754
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.5e-08 Score=81.06 Aligned_cols=68 Identities=19% Similarity=0.213 Sum_probs=56.2
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CCCCCeeEEeccccchhhHH
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~~~~~v~~i~gDi~~~~~~~ 109 (179)
++++.+|||+|||+|.++..++++.+ ..|+|+|+++. ...++++++++|+.+.+
T Consensus 53 ~~~~~~vLdiG~G~G~~~~~l~~~~~--------------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~--- 115 (266)
T 3ujc_A 53 LNENSKVLDIGSGLGGGCMYINEKYG--------------AHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKE--- 115 (266)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHC--------------CEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCC---
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHcC--------------CEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCC---
Confidence 36788999999999999999999863 69999999983 11268999999998864
Q ss_pred HHHhhcCCCCccEEeeCCC
Q 030299 110 VVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~ 128 (179)
+++++||+|++...
T Consensus 116 -----~~~~~fD~v~~~~~ 129 (266)
T 3ujc_A 116 -----FPENNFDLIYSRDA 129 (266)
T ss_dssp -----CCTTCEEEEEEESC
T ss_pred -----CCCCcEEEEeHHHH
Confidence 45678999999754
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=98.82 E-value=1.1e-08 Score=81.60 Aligned_cols=71 Identities=20% Similarity=0.254 Sum_probs=55.6
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CCCCCeeEEeccccchhhHH
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~~~~~v~~i~gDi~~~~~~~ 109 (179)
++++.+|||||||+|.++..++++.+ .+.|+|+|+++. ...+++.++.+|+.++...
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~-------------~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~- 137 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIAD-------------KGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEY- 137 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTT-------------TSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGG-
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcC-------------CcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccc-
Confidence 46789999999999999999999875 479999999983 1236899999999874310
Q ss_pred HHHhhcCCCCccEEeeCC
Q 030299 110 VVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~ 127 (179)
..+. ..||+|+++.
T Consensus 138 ---~~~~-~~~D~v~~~~ 151 (230)
T 1fbn_A 138 ---ANIV-EKVDVIYEDV 151 (230)
T ss_dssp ---TTTS-CCEEEEEECC
T ss_pred ---cccC-ccEEEEEEec
Confidence 0123 5799999775
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.7e-08 Score=85.41 Aligned_cols=67 Identities=21% Similarity=0.340 Sum_probs=53.7
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART 107 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~ 107 (179)
++++++|||||||||++|..++.+.. +++|+|+|+++.. .+.+++++++|+.+.+
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~-------------ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~- 185 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVY-------------GMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID- 185 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTT-------------CCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG-
T ss_pred CCCcCEEEEECCCccHHHHHHHHHcc-------------CCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC-
Confidence 58899999999999999876655543 5899999999831 2468999999998742
Q ss_pred HHHHHhhcCCCCccEEeeCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~ 128 (179)
+.+||+|++++.
T Consensus 186 ---------d~~FDvV~~~a~ 197 (298)
T 3fpf_A 186 ---------GLEFDVLMVAAL 197 (298)
T ss_dssp ---------GCCCSEEEECTT
T ss_pred ---------CCCcCEEEECCC
Confidence 468999998754
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.82 E-value=1.1e-08 Score=82.36 Aligned_cols=76 Identities=24% Similarity=0.319 Sum_probs=57.9
Q ss_pred HHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCeeE
Q 030299 29 LLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQ 97 (179)
Q Consensus 29 L~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~~~v~~ 97 (179)
+..+.+...+ +++.+|||||||+|.++..++++. ..|+|+|+++. ...+++.+
T Consensus 26 ~~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~---------------~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~ 89 (260)
T 1vl5_A 26 LAKLMQIAAL-KGNEEVLDVATGGGHVANAFAPFV---------------KKVVAFDLTEDILKVARAFIEGNGHQQVEY 89 (260)
T ss_dssp HHHHHHHHTC-CSCCEEEEETCTTCHHHHHHGGGS---------------SEEEEEESCHHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHhCC-CCCCEEEEEeCCCCHHHHHHHHhC---------------CEEEEEeCCHHHHHHHHHHHHhcCCCceEE
Confidence 3344444443 678899999999999999998763 58999999982 12468999
Q ss_pred EeccccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 98 VQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 98 i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
+++|+.+.+ ++++.||+|++...
T Consensus 90 ~~~d~~~l~--------~~~~~fD~V~~~~~ 112 (260)
T 1vl5_A 90 VQGDAEQMP--------FTDERFHIVTCRIA 112 (260)
T ss_dssp EECCC-CCC--------SCTTCEEEEEEESC
T ss_pred EEecHHhCC--------CCCCCEEEEEEhhh
Confidence 999998864 45678999999754
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=98.81 E-value=2.4e-08 Score=79.06 Aligned_cols=73 Identities=23% Similarity=0.244 Sum_probs=57.3
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CCCCCeeEEeccccchhhHH
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~~~~~v~~i~gDi~~~~~~~ 109 (179)
+.++.+|||+|||+|.++..++++.++ .+.|+|+|+++. ...++++++++|+.+....
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~------------~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~- 137 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGW------------EGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEY- 137 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCT------------TSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGG-
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCC------------CeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchh-
Confidence 467899999999999999999998753 479999999982 1236899999999885321
Q ss_pred HHHhhcCCCCccEEeeCCC
Q 030299 110 VVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~ 128 (179)
..+ ..+||+|++|..
T Consensus 138 ---~~~-~~~~D~v~~~~~ 152 (227)
T 1g8a_A 138 ---RAL-VPKVDVIFEDVA 152 (227)
T ss_dssp ---TTT-CCCEEEEEECCC
T ss_pred ---hcc-cCCceEEEECCC
Confidence 012 247999999875
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=98.80 E-value=2.2e-08 Score=79.37 Aligned_cols=76 Identities=11% Similarity=0.082 Sum_probs=58.8
Q ss_pred hHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCeeEEe
Q 030299 31 QIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQ 99 (179)
Q Consensus 31 eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~~~v~~i~ 99 (179)
+..+.|. +++.+|||||||+|.++..++++.+ ...|+|+|+++. ..++|+.+++
T Consensus 30 ~~~~~f~--~~~~~vLDiGcG~G~~~~~la~~~p-------------~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~ 94 (213)
T 2fca_A 30 KWNTVFG--NDNPIHIEVGTGKGQFISGMAKQNP-------------DINYIGIELFKSVIVTAVQKVKDSEAQNVKLLN 94 (213)
T ss_dssp CHHHHHT--SCCCEEEEECCTTSHHHHHHHHHCT-------------TSEEEEECSCHHHHHHHHHHHHHSCCSSEEEEC
T ss_pred CHHHHcC--CCCceEEEEecCCCHHHHHHHHHCC-------------CCCEEEEEechHHHHHHHHHHHHcCCCCEEEEe
Confidence 3334454 5678999999999999999999865 579999999983 1356899999
Q ss_pred ccccchhhHHHHHhhcCCCCccEEeeCC
Q 030299 100 GDITNARTAEVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 100 gDi~~~~~~~~l~~~~~~~~~D~VlsD~ 127 (179)
+|+.+... .+++..+|.|++..
T Consensus 95 ~d~~~l~~------~~~~~~~d~v~~~~ 116 (213)
T 2fca_A 95 IDADTLTD------VFEPGEVKRVYLNF 116 (213)
T ss_dssp CCGGGHHH------HCCTTSCCEEEEES
T ss_pred CCHHHHHh------hcCcCCcCEEEEEC
Confidence 99987431 25567899998764
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.5e-08 Score=78.77 Aligned_cols=76 Identities=18% Similarity=0.103 Sum_probs=59.3
Q ss_pred HHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-------CCCCCeeEEecc
Q 030299 29 LLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-------APIEGVIQVQGD 101 (179)
Q Consensus 29 L~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-------~~~~~v~~i~gD 101 (179)
+..+.+...-+.++.+|||||||+|.++..++++ + .+|+|+|+++. ...++++++++|
T Consensus 34 ~~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~-~--------------~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d 98 (218)
T 3ou2_A 34 APAALERLRAGNIRGDVLELASGTGYWTRHLSGL-A--------------DRVTALDGSAEMIAEAGRHGLDNVEFRQQD 98 (218)
T ss_dssp HHHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH-S--------------SEEEEEESCHHHHHHHGGGCCTTEEEEECC
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc-C--------------CeEEEEeCCHHHHHHHHhcCCCCeEEEecc
Confidence 3344444554678889999999999999999987 3 68999999983 124689999999
Q ss_pred ccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 102 ITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 102 i~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
+.+. +++++||+|++...
T Consensus 99 ~~~~---------~~~~~~D~v~~~~~ 116 (218)
T 3ou2_A 99 LFDW---------TPDRQWDAVFFAHW 116 (218)
T ss_dssp TTSC---------CCSSCEEEEEEESC
T ss_pred cccC---------CCCCceeEEEEech
Confidence 9875 24578999999653
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.8e-08 Score=81.56 Aligned_cols=69 Identities=17% Similarity=0.278 Sum_probs=56.3
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNAR 106 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~ 106 (179)
+.++.+|||||||+|.++..++++ + ...|+|+|+++.. .+ ++++++++|+.+.+
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~-~-------------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 109 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGH-V-------------TGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLP 109 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTT-C-------------SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhc-c-------------CCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCC
Confidence 468899999999999999999987 4 4799999999841 12 46999999998864
Q ss_pred hHHHHHhhcCCCCccEEeeCCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
+++++||+|++.+..
T Consensus 110 --------~~~~~fD~i~~~~~~ 124 (267)
T 3kkz_A 110 --------FRNEELDLIWSEGAI 124 (267)
T ss_dssp --------CCTTCEEEEEESSCG
T ss_pred --------CCCCCEEEEEEcCCc
Confidence 345789999998754
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.9e-08 Score=83.10 Aligned_cols=66 Identities=14% Similarity=-0.007 Sum_probs=54.2
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCC-CeeEEeccccchh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNAR 106 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~-~v~~i~gDi~~~~ 106 (179)
++++.+|||||||+|.++..++++.+ ..|+|+|+++.. .++ +++++.+|+.+.
T Consensus 70 ~~~~~~vLDiGcG~G~~~~~la~~~~--------------~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~- 134 (302)
T 3hem_A 70 LEPGMTLLDIGCGWGSTMRHAVAEYD--------------VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF- 134 (302)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHC--------------CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-
T ss_pred CCCcCEEEEeeccCcHHHHHHHHhCC--------------CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-
Confidence 37899999999999999999999874 689999999831 233 789999999763
Q ss_pred hHHHHHhhcCCCCccEEeeCCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
+++||+|++....
T Consensus 135 ----------~~~fD~v~~~~~~ 147 (302)
T 3hem_A 135 ----------DEPVDRIVSLGAF 147 (302)
T ss_dssp ----------CCCCSEEEEESCG
T ss_pred ----------CCCccEEEEcchH
Confidence 3689999997653
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=2.6e-08 Score=80.54 Aligned_cols=72 Identities=19% Similarity=0.224 Sum_probs=55.4
Q ss_pred CCCEEEEEccCCChHHHHHHHH---hCCCCCCCCCCCCCCCCeEEEEeCCCCC-----C-CCCeeEEeccccchhhHHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRK---LYLPAKLSPDSREGDLPLIVAIDLQPMA-----P-IEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~---~~~~~~~~~~~~~~~~~~VvavD~~~~~-----~-~~~v~~i~gDi~~~~~~~~l 111 (179)
++.+|||||||+|.++..+++. +.+ .++|+|+|+++.. . ..+++++++|+.+.+..
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~------------~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l--- 145 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGI------------DCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTF--- 145 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTC------------CCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGG---
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCC------------CCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHH---
Confidence 5679999999999999999987 332 5899999999842 1 25799999999885221
Q ss_pred HhhcCCCCccEEeeCCC
Q 030299 112 IRHFDGCKADLVVCDGA 128 (179)
Q Consensus 112 ~~~~~~~~~D~VlsD~~ 128 (179)
....+.+||+|++|++
T Consensus 146 -~~~~~~~fD~I~~d~~ 161 (236)
T 2bm8_A 146 -EHLREMAHPLIFIDNA 161 (236)
T ss_dssp -GGGSSSCSSEEEEESS
T ss_pred -HhhccCCCCEEEECCc
Confidence 1123347999999876
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.77 E-value=4.2e-08 Score=79.69 Aligned_cols=74 Identities=22% Similarity=0.362 Sum_probs=56.9
Q ss_pred CC-CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCC-CeeEEeccccch
Q 030299 39 FE-GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNA 105 (179)
Q Consensus 39 l~-~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~-~v~~i~gDi~~~ 105 (179)
++ ++.+|||+|||+|.++..++++.+ ..|+|+|+++.. +.. +++++++|+.+.
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~--------------~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~ 111 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTK--------------AKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKI 111 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCC--------------CEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGG
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcC--------------CcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHh
Confidence 46 889999999999999999998742 499999999831 233 599999999986
Q ss_pred hhHHHHHhhcCCCCccEEeeCCCCCCC
Q 030299 106 RTAEVVIRHFDGCKADLVVCDGAPDVT 132 (179)
Q Consensus 106 ~~~~~l~~~~~~~~~D~VlsD~~~~~~ 132 (179)
.. .++..+||+|++|.+....
T Consensus 112 ~~------~~~~~~fD~Ii~npPy~~~ 132 (259)
T 3lpm_A 112 TD------LIPKERADIVTCNPPYFAT 132 (259)
T ss_dssp GG------TSCTTCEEEEEECCCC---
T ss_pred hh------hhccCCccEEEECCCCCCC
Confidence 42 2445789999999765443
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.1e-08 Score=78.99 Aligned_cols=69 Identities=16% Similarity=0.163 Sum_probs=54.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
.++.+|||||||+|.++..++.+ + ..+|+|+|+++.. ...+++++++|+.+...
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~-~-------------~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~- 107 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR-G-------------AASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVA- 107 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-T-------------CSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHH-
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC-C-------------CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHh-
Confidence 47889999999999999988775 3 3689999999831 24689999999987532
Q ss_pred HHHHhhcCCCCccEEeeCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~ 128 (179)
.+++.+||+|++|.+
T Consensus 108 -----~~~~~~fD~i~~~~p 122 (189)
T 3p9n_A 108 -----AGTTSPVDLVLADPP 122 (189)
T ss_dssp -----HCCSSCCSEEEECCC
T ss_pred -----hccCCCccEEEECCC
Confidence 234578999999865
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=98.76 E-value=4e-08 Score=79.52 Aligned_cols=80 Identities=15% Similarity=0.218 Sum_probs=58.1
Q ss_pred hHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-------C----------CC-
Q 030299 31 QIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-------A----------PI- 92 (179)
Q Consensus 31 eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-------~----------~~- 92 (179)
.+.+... ++++.+|||||||+|.++..++++.++ ...|+|+|+++. . ..
T Consensus 34 ~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~g~------------~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~ 100 (275)
T 3bkx_A 34 AIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQVGS------------SGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLG 100 (275)
T ss_dssp HHHHHHT-CCTTCEEEEESCTTSHHHHHHHHHHCT------------TCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTG
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHhCC------------CCEEEEEECCccccccHHHHHHHHHHHHhcCCC
Confidence 3334444 378899999999999999999998743 479999999983 1 11
Q ss_pred CCeeEEecc-ccchhhHHHHHhhcCCCCccEEeeCCCC
Q 030299 93 EGVIQVQGD-ITNARTAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 93 ~~v~~i~gD-i~~~~~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
++++++++| +..... .+++++||+|++....
T Consensus 101 ~~v~~~~~d~~~~~~~------~~~~~~fD~v~~~~~l 132 (275)
T 3bkx_A 101 DRLTVHFNTNLSDDLG------PIADQHFDRVVLAHSL 132 (275)
T ss_dssp GGEEEECSCCTTTCCG------GGTTCCCSEEEEESCG
T ss_pred CceEEEECChhhhccC------CCCCCCEEEEEEccch
Confidence 478999998 433221 1345789999987653
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.76 E-value=3.7e-08 Score=77.86 Aligned_cols=68 Identities=22% Similarity=0.190 Sum_probs=55.8
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CCCCCeeEEeccccchhhHH
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~~~~~v~~i~gDi~~~~~~~ 109 (179)
..++.+|||+|||+|.++..++++.+ ...|+|+|+++. ....++.++++|+.+.+
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~~-------------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~--- 105 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKYP-------------EATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYD--- 105 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHCT-------------TCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCC---
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCC-------------CCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccC---
Confidence 45788999999999999999999874 579999999983 12338999999999865
Q ss_pred HHHhhcCCCCccEEeeCCC
Q 030299 110 VVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~ 128 (179)
+. ++||+|++...
T Consensus 106 -----~~-~~fD~v~~~~~ 118 (234)
T 3dtn_A 106 -----FE-EKYDMVVSALS 118 (234)
T ss_dssp -----CC-SCEEEEEEESC
T ss_pred -----CC-CCceEEEEeCc
Confidence 23 68999999764
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.75 E-value=7.4e-09 Score=82.66 Aligned_cols=73 Identities=15% Similarity=0.158 Sum_probs=55.5
Q ss_pred hCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---CCCCeeEEeccccchhhHHHHH
Q 030299 36 FNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---PIEGVIQVQGDITNARTAEVVI 112 (179)
Q Consensus 36 ~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---~~~~v~~i~gDi~~~~~~~~l~ 112 (179)
...++++.+|||||||+|.++..++++ + ..|+|+|+++.. ...++.++.+|+.+..
T Consensus 36 l~~~~~~~~vLDiGcG~G~~~~~l~~~-~--------------~~v~gvD~s~~~~~~a~~~~~~~~~d~~~~~------ 94 (240)
T 3dli_A 36 IPYFKGCRRVLDIGCGRGEFLELCKEE-G--------------IESIGVDINEDMIKFCEGKFNVVKSDAIEYL------ 94 (240)
T ss_dssp GGGTTTCSCEEEETCTTTHHHHHHHHH-T--------------CCEEEECSCHHHHHHHHTTSEEECSCHHHHH------
T ss_pred HhhhcCCCeEEEEeCCCCHHHHHHHhC-C--------------CcEEEEECCHHHHHHHHhhcceeeccHHHHh------
Confidence 344678899999999999999999887 3 579999999832 1123888899987742
Q ss_pred hhcCCCCccEEeeCCCC
Q 030299 113 RHFDGCKADLVVCDGAP 129 (179)
Q Consensus 113 ~~~~~~~~D~VlsD~~~ 129 (179)
..+++++||+|++....
T Consensus 95 ~~~~~~~fD~i~~~~~l 111 (240)
T 3dli_A 95 KSLPDKYLDGVMISHFV 111 (240)
T ss_dssp HTSCTTCBSEEEEESCG
T ss_pred hhcCCCCeeEEEECCch
Confidence 12466789999997543
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=98.74 E-value=2.1e-08 Score=78.92 Aligned_cols=70 Identities=11% Similarity=0.099 Sum_probs=56.7
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
+++.+|||||||+|.++..++++.+ ...|+|+|+++.. .++++.++++|+.+.+.
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~p-------------~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~- 105 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQNP-------------DINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTD- 105 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHCT-------------TSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGG-
T ss_pred CCCCeEEEEccCcCHHHHHHHHHCC-------------CCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHh-
Confidence 5688999999999999999999875 5799999999831 24689999999987431
Q ss_pred HHHHhhcCCCCccEEeeCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~ 128 (179)
.++++.||+|+++.+
T Consensus 106 -----~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 106 -----YFEDGEIDRLYLNFS 120 (214)
T ss_dssp -----TSCTTCCSEEEEESC
T ss_pred -----hcCCCCCCEEEEECC
Confidence 244568999999853
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.74 E-value=2.2e-08 Score=77.94 Aligned_cols=70 Identities=20% Similarity=0.089 Sum_probs=56.1
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART 107 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~ 107 (179)
++++.+|||+|||+|.++..++++.+ ..+|+|+|+++.. ..++++++++|+.+...
T Consensus 38 ~~~~~~vLDiG~G~G~~~~~la~~~~-------------~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~ 104 (204)
T 3e05_A 38 LQDDLVMWDIGAGSASVSIEASNLMP-------------NGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLD 104 (204)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHCT-------------TSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCT
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHCC-------------CCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhh
Confidence 37889999999999999999999854 5899999999831 24689999999976421
Q ss_pred HHHHHhhcCCCCccEEeeCCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
....||+|++++..
T Consensus 105 --------~~~~~D~i~~~~~~ 118 (204)
T 3e05_A 105 --------DLPDPDRVFIGGSG 118 (204)
T ss_dssp --------TSCCCSEEEESCCT
T ss_pred --------cCCCCCEEEECCCC
Confidence 12579999998754
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.74 E-value=2.9e-08 Score=76.85 Aligned_cols=65 Identities=14% Similarity=0.079 Sum_probs=53.8
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC------CCCCCeeEEeccccchhhHHHHHhhc
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------APIEGVIQVQGDITNARTAEVVIRHF 115 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~------~~~~~v~~i~gDi~~~~~~~~l~~~~ 115 (179)
+.+|||+|||+|.++..++++ + ..|+|+|+++. +..+++.++++|+.+.+ +
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~-~--------------~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~--------~ 98 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL-G--------------HQIEGLEPATRLVELARQTHPSVTFHHGTITDLS--------D 98 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT-T--------------CCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGG--------G
T ss_pred CCeEEEecCCCCHHHHHHHhc-C--------------CeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccc--------c
Confidence 789999999999999999887 3 58999999983 12568999999998864 3
Q ss_pred CCCCccEEeeCCCC
Q 030299 116 DGCKADLVVCDGAP 129 (179)
Q Consensus 116 ~~~~~D~VlsD~~~ 129 (179)
++++||+|++....
T Consensus 99 ~~~~fD~v~~~~~l 112 (203)
T 3h2b_A 99 SPKRWAGLLAWYSL 112 (203)
T ss_dssp SCCCEEEEEEESSS
T ss_pred CCCCeEEEEehhhH
Confidence 56789999997643
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=98.73 E-value=8.4e-09 Score=81.14 Aligned_cols=68 Identities=15% Similarity=-0.010 Sum_probs=53.8
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-------C-C---------------CCCe
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-------A-P---------------IEGV 95 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-------~-~---------------~~~v 95 (179)
+.++.+|||+|||+|..+.+++++ + ..|+|+|+++. . . ..++
T Consensus 20 ~~~~~~vLD~GCG~G~~~~~la~~-g--------------~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v 84 (203)
T 1pjz_A 20 VVPGARVLVPLCGKSQDMSWLSGQ-G--------------YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGI 84 (203)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHH-C--------------CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSS
T ss_pred cCCCCEEEEeCCCCcHhHHHHHHC-C--------------CeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCcc
Confidence 367889999999999999999987 3 68999999982 0 1 2579
Q ss_pred eEEeccccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 96 IQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 96 ~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
+++++|+++.+... .++||+|++.+.
T Consensus 85 ~~~~~d~~~l~~~~-------~~~fD~v~~~~~ 110 (203)
T 1pjz_A 85 EIWCGDFFALTARD-------IGHCAAFYDRAA 110 (203)
T ss_dssp EEEEECCSSSTHHH-------HHSEEEEEEESC
T ss_pred EEEECccccCCccc-------CCCEEEEEECcc
Confidence 99999999875310 147999998654
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.9e-08 Score=78.45 Aligned_cols=72 Identities=7% Similarity=0.001 Sum_probs=56.6
Q ss_pred CCCCCCEEEEEccC-CChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccch
Q 030299 38 IFEGVKRVVDLCAA-PGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNA 105 (179)
Q Consensus 38 ll~~g~~VlDLgag-pGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~ 105 (179)
.++++.+|||+||| +|.++..++++.+ ..|+|+|+++.. .. +++++++|+...
T Consensus 52 ~~~~~~~vLDlG~G~~G~~~~~la~~~~--------------~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~ 116 (230)
T 3evz_A 52 FLRGGEVALEIGTGHTAMMALMAEKFFN--------------CKVTATEVDEEFFEYARRNIERNNS-NVRLVKSNGGII 116 (230)
T ss_dssp TCCSSCEEEEECCTTTCHHHHHHHHHHC--------------CEEEEEECCHHHHHHHHHHHHHTTC-CCEEEECSSCSS
T ss_pred hcCCCCEEEEcCCCHHHHHHHHHHHhcC--------------CEEEEEECCHHHHHHHHHHHHHhCC-CcEEEeCCchhh
Confidence 45789999999999 9999999998853 689999999831 23 789999998654
Q ss_pred hhHHHHHhhcCCCCccEEeeCCCCCC
Q 030299 106 RTAEVVIRHFDGCKADLVVCDGAPDV 131 (179)
Q Consensus 106 ~~~~~l~~~~~~~~~D~VlsD~~~~~ 131 (179)
.. +++++||+|++|.+...
T Consensus 117 ~~-------~~~~~fD~I~~npp~~~ 135 (230)
T 3evz_A 117 KG-------VVEGTFDVIFSAPPYYD 135 (230)
T ss_dssp TT-------TCCSCEEEEEECCCCC-
T ss_pred hh-------cccCceeEEEECCCCcC
Confidence 32 34578999999966433
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=98.73 E-value=8.5e-09 Score=79.73 Aligned_cols=83 Identities=14% Similarity=-0.054 Sum_probs=54.7
Q ss_pred HHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CC--C--CeeEEecc
Q 030299 32 IDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI--E--GVIQVQGD 101 (179)
Q Consensus 32 id~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~--~--~v~~i~gD 101 (179)
+.+......++.+|||+|||+|.++..++++.+ ...|+|+|+++.. .. . +++++++|
T Consensus 21 ~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~-------------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d 87 (215)
T 4dzr_A 21 AIRFLKRMPSGTRVIDVGTGSGCIAVSIALACP-------------GVSVTAVDLSMDALAVARRNAERFGAVVDWAAAD 87 (215)
T ss_dssp HHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCT-------------TEEEEEEECC-------------------CCHHH
T ss_pred HHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCC-------------CCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcc
Confidence 334444347889999999999999999999864 4699999999841 11 1 57788888
Q ss_pred ccchhhHHHHHhhcCCCCccEEeeCCCCCC
Q 030299 102 ITNARTAEVVIRHFDGCKADLVVCDGAPDV 131 (179)
Q Consensus 102 i~~~~~~~~l~~~~~~~~~D~VlsD~~~~~ 131 (179)
+.+... ... ...++||+|++|.+...
T Consensus 88 ~~~~~~--~~~--~~~~~fD~i~~npp~~~ 113 (215)
T 4dzr_A 88 GIEWLI--ERA--ERGRPWHAIVSNPPYIP 113 (215)
T ss_dssp HHHHHH--HHH--HTTCCBSEEEECCCCCC
T ss_pred hHhhhh--hhh--hccCcccEEEECCCCCC
Confidence 887321 100 12368999999976543
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=98.73 E-value=8.6e-09 Score=78.93 Aligned_cols=65 Identities=23% Similarity=0.274 Sum_probs=52.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC--CCCCCeeEEeccccchhhHHHHHhhcCC
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM--APIEGVIQVQGDITNARTAEVVIRHFDG 117 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~--~~~~~v~~i~gDi~~~~~~~~l~~~~~~ 117 (179)
.++.+|||+|||+|.++..++++ . .|+|+|+++. +..++++++++|+.+. +++
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~---------------~-~v~gvD~s~~~~~~~~~~~~~~~d~~~~---------~~~ 76 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKR---------------N-TVVSTDLNIRALESHRGGNLVRADLLCS---------INQ 76 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTT---------------S-EEEEEESCHHHHHTCSSSCEEECSTTTT---------BCG
T ss_pred CCCCeEEEeccCccHHHHHHHhc---------------C-cEEEEECCHHHHhcccCCeEEECChhhh---------ccc
Confidence 45679999999999999998764 3 8999999983 2256899999999884 234
Q ss_pred CCccEEeeCCCC
Q 030299 118 CKADLVVCDGAP 129 (179)
Q Consensus 118 ~~~D~VlsD~~~ 129 (179)
++||+|+++.+.
T Consensus 77 ~~fD~i~~n~~~ 88 (170)
T 3q87_B 77 ESVDVVVFNPPY 88 (170)
T ss_dssp GGCSEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 689999998654
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=98.73 E-value=2.1e-08 Score=80.57 Aligned_cols=69 Identities=14% Similarity=0.118 Sum_probs=56.5
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCC-eeEEeccccchh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEG-VIQVQGDITNAR 106 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~-v~~i~gDi~~~~ 106 (179)
++++.+|||+|||+|.++..+++.+++ ..+|+++|+++.. ..++ ++++++|+.+.
T Consensus 91 ~~~~~~vldiG~G~G~~~~~l~~~~~~------------~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~- 157 (255)
T 3mb5_A 91 ISPGDFIVEAGVGSGALTLFLANIVGP------------EGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG- 157 (255)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCT------------TSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC-
T ss_pred CCCCCEEEEecCCchHHHHHHHHHhCC------------CeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc-
Confidence 378899999999999999999999653 5899999999831 2345 99999999864
Q ss_pred hHHHHHhhcCCCCccEEeeCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
+++.+||+|++|..
T Consensus 158 --------~~~~~~D~v~~~~~ 171 (255)
T 3mb5_A 158 --------IEEENVDHVILDLP 171 (255)
T ss_dssp --------CCCCSEEEEEECSS
T ss_pred --------cCCCCcCEEEECCC
Confidence 35568999999864
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=98.73 E-value=9.8e-09 Score=80.38 Aligned_cols=65 Identities=14% Similarity=0.159 Sum_probs=53.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CC-CCeeEEeccccchhhHHHHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI-EGVIQVQGDITNARTAEVVI 112 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~-~~v~~i~gDi~~~~~~~~l~ 112 (179)
.++.+|||+|||+|.++..++++ + ..|+|+|+++.. .. .+++++++|+.+.+
T Consensus 44 ~~~~~vLDiGcG~G~~~~~l~~~-~--------------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~------ 102 (220)
T 3hnr_A 44 KSFGNVLEFGVGTGNLTNKLLLA-G--------------RTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFE------ 102 (220)
T ss_dssp TCCSEEEEECCTTSHHHHHHHHT-T--------------CEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCC------
T ss_pred cCCCeEEEeCCCCCHHHHHHHhC-C--------------CeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcC------
Confidence 47889999999999999999886 2 689999999831 12 48999999999864
Q ss_pred hhcCCCCccEEeeCCC
Q 030299 113 RHFDGCKADLVVCDGA 128 (179)
Q Consensus 113 ~~~~~~~~D~VlsD~~ 128 (179)
++ ++||+|++...
T Consensus 103 --~~-~~fD~v~~~~~ 115 (220)
T 3hnr_A 103 --VP-TSIDTIVSTYA 115 (220)
T ss_dssp --CC-SCCSEEEEESC
T ss_pred --CC-CCeEEEEECcc
Confidence 33 68999999764
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.72 E-value=2.2e-08 Score=82.58 Aligned_cols=75 Identities=17% Similarity=0.191 Sum_probs=56.7
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-------------CCCCeeEEeccccchh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------------PIEGVIQVQGDITNAR 106 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-------------~~~~v~~i~gDi~~~~ 106 (179)
.++.+|||||||+|.++..++++.+. ...|+|+|+++.. ..++++++++|+.+.+
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~------------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~ 102 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKP------------FEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFK 102 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSC------------CSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCG
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCC------------CCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCC
Confidence 58899999999999999999987632 5899999999831 1468999999999865
Q ss_pred hHHHHHhhcCCCCccEEeeCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
... ...+..++||+|++...
T Consensus 103 ~~~--~~~~~~~~fD~V~~~~~ 122 (299)
T 3g5t_A 103 FLG--ADSVDKQKIDMITAVEC 122 (299)
T ss_dssp GGC--TTTTTSSCEEEEEEESC
T ss_pred ccc--cccccCCCeeEEeHhhH
Confidence 210 00011268999999764
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.6e-08 Score=80.37 Aligned_cols=66 Identities=15% Similarity=0.098 Sum_probs=53.4
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC------CCCCCeeEEeccccchhhHHHHH
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------APIEGVIQVQGDITNARTAEVVI 112 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~------~~~~~v~~i~gDi~~~~~~~~l~ 112 (179)
++++.+|||+|||+|.++..++++ + ..|+|+|+++. +..++++++++|+.+...
T Consensus 46 ~~~~~~vLDiGcG~G~~~~~l~~~-~--------------~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~----- 105 (226)
T 3m33_A 46 LTPQTRVLEAGCGHGPDAARFGPQ-A--------------ARWAAYDFSPELLKLARANAPHADVYEWNGKGELP----- 105 (226)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGG-S--------------SEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCC-----
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHc-C--------------CEEEEEECCHHHHHHHHHhCCCceEEEcchhhccC-----
Confidence 478899999999999999999887 3 68999999983 125689999999965321
Q ss_pred hhcC-CCCccEEeeC
Q 030299 113 RHFD-GCKADLVVCD 126 (179)
Q Consensus 113 ~~~~-~~~~D~VlsD 126 (179)
++ +++||+|++.
T Consensus 106 --~~~~~~fD~v~~~ 118 (226)
T 3m33_A 106 --AGLGAPFGLIVSR 118 (226)
T ss_dssp --TTCCCCEEEEEEE
T ss_pred --CcCCCCEEEEEeC
Confidence 33 5689999996
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.71 E-value=2.8e-08 Score=77.45 Aligned_cols=67 Identities=15% Similarity=0.212 Sum_probs=55.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~~~v~~i~gDi~~~~~~ 108 (179)
+++.+|||+|||+|.++..+++. . .+|+|+|+++. ...++++++++|+.+...
T Consensus 76 ~~~~~vLdiG~G~G~~~~~la~~-~--------------~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~- 139 (210)
T 3lbf_A 76 TPQSRVLEIGTGSGYQTAILAHL-V--------------QHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQ- 139 (210)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHH-S--------------SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG-
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh-C--------------CEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCc-
Confidence 68899999999999999999987 3 69999999983 134689999999987532
Q ss_pred HHHHhhcCCCCccEEeeCCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~ 129 (179)
.+.+||+|+++..+
T Consensus 140 -------~~~~~D~i~~~~~~ 153 (210)
T 3lbf_A 140 -------ARAPFDAIIVTAAP 153 (210)
T ss_dssp -------GGCCEEEEEESSBC
T ss_pred -------cCCCccEEEEccch
Confidence 24689999998754
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.4e-08 Score=81.00 Aligned_cols=68 Identities=22% Similarity=0.164 Sum_probs=54.9
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~~ 107 (179)
.++.+|||+|||+|.++..++++ ...|+|+|+++.. .+ ++++++++|+.+..
T Consensus 77 ~~~~~vLD~gcG~G~~~~~la~~---------------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~- 140 (241)
T 3gdh_A 77 FKCDVVVDAFCGVGGNTIQFALT---------------GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA- 140 (241)
T ss_dssp SCCSEEEETTCTTSHHHHHHHHT---------------TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-
T ss_pred cCCCEEEECccccCHHHHHHHHc---------------CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-
Confidence 37899999999999999999986 2689999999831 22 47999999998864
Q ss_pred HHHHHhhcCCCCccEEeeCCCCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGAPDV 131 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~~~~ 131 (179)
.+..||+|+++.+...
T Consensus 141 --------~~~~~D~v~~~~~~~~ 156 (241)
T 3gdh_A 141 --------SFLKADVVFLSPPWGG 156 (241)
T ss_dssp --------GGCCCSEEEECCCCSS
T ss_pred --------ccCCCCEEEECCCcCC
Confidence 2358999999976543
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.70 E-value=3.7e-08 Score=81.20 Aligned_cols=72 Identities=25% Similarity=0.246 Sum_probs=58.3
Q ss_pred hCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccc
Q 030299 36 FNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITN 104 (179)
Q Consensus 36 ~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~ 104 (179)
...+.++.+|||+|||+|.++..++.+.+ .++|+|+|+++.. .+.++.++++|+.+
T Consensus 114 ~~~~~~~~~VLDlgcG~G~~s~~la~~~~-------------~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~ 180 (272)
T 3a27_A 114 AFISNENEVVVDMFAGIGYFTIPLAKYSK-------------PKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRD 180 (272)
T ss_dssp HTSCCTTCEEEETTCTTTTTHHHHHHHTC-------------CSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGG
T ss_pred HHhcCCCCEEEEecCcCCHHHHHHHHhCC-------------CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHH
Confidence 34468899999999999999999999864 4699999999831 34688999999988
Q ss_pred hhhHHHHHhhcCCCCccEEeeCCCC
Q 030299 105 ARTAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 105 ~~~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
. . . ...||+|++|.+.
T Consensus 181 ~-~-------~-~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 181 V-E-------L-KDVADRVIMGYVH 196 (272)
T ss_dssp C-C-------C-TTCEEEEEECCCS
T ss_pred c-C-------c-cCCceEEEECCcc
Confidence 5 2 1 3579999999764
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=2.2e-08 Score=84.39 Aligned_cols=68 Identities=12% Similarity=0.151 Sum_probs=55.9
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CCCCeeEEeccccchhhHHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~~~~v~~i~gDi~~~~~~~~ 110 (179)
.++++|||||||+|.+|..++++ + .+|+|+|+++.. ..++++++++|+.+.+
T Consensus 49 ~~~~~VLEIG~G~G~lT~~La~~-~--------------~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~---- 109 (295)
T 3gru_A 49 TKDDVVLEIGLGKGILTEELAKN-A--------------KKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVD---- 109 (295)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHH-S--------------SEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSC----
T ss_pred CCcCEEEEECCCchHHHHHHHhc-C--------------CEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCC----
Confidence 67899999999999999999987 2 689999999831 2468999999999864
Q ss_pred HHhhcCCCCccEEeeCCCCC
Q 030299 111 VIRHFDGCKADLVVCDGAPD 130 (179)
Q Consensus 111 l~~~~~~~~~D~VlsD~~~~ 130 (179)
+++..||.|+++.+.+
T Consensus 110 ----~~~~~fD~Iv~NlPy~ 125 (295)
T 3gru_A 110 ----LNKLDFNKVVANLPYQ 125 (295)
T ss_dssp ----GGGSCCSEEEEECCGG
T ss_pred ----cccCCccEEEEeCccc
Confidence 2334699999987653
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=98.70 E-value=3.9e-08 Score=77.85 Aligned_cols=68 Identities=16% Similarity=0.214 Sum_probs=55.9
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC------C--CCCCeeEEeccccchhhHHH
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------A--PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~------~--~~~~v~~i~gDi~~~~~~~~ 110 (179)
+.++.+|||||||+|.++..++++ + ..|+|+|+++. + ...++.++++|+.+.+
T Consensus 51 ~~~~~~vLDiG~G~G~~~~~l~~~-~--------------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~---- 111 (242)
T 3l8d_A 51 VKKEAEVLDVGCGDGYGTYKLSRT-G--------------YKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLP---- 111 (242)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHT-T--------------CEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCS----
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHc-C--------------CeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCC----
Confidence 468899999999999999999886 3 68999999983 1 2468999999999864
Q ss_pred HHhhcCCCCccEEeeCCCC
Q 030299 111 VIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 111 l~~~~~~~~~D~VlsD~~~ 129 (179)
+++++||+|++....
T Consensus 112 ----~~~~~fD~v~~~~~l 126 (242)
T 3l8d_A 112 ----FENEQFEAIMAINSL 126 (242)
T ss_dssp ----SCTTCEEEEEEESCT
T ss_pred ----CCCCCccEEEEcChH
Confidence 356789999986543
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=98.69 E-value=2.9e-08 Score=85.44 Aligned_cols=77 Identities=19% Similarity=0.120 Sum_probs=58.4
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------C-----------C--CCeeEEe
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P-----------I--EGVIQVQ 99 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~-----------~--~~v~~i~ 99 (179)
+.++.+|||||||+|.++..++++.++ .+.|+|+|+++.. . . +++++++
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~------------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~ 148 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGE------------HGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLK 148 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTT------------TCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEE
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCC------------CCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEE
Confidence 357899999999999999999998753 5799999999831 1 1 6899999
Q ss_pred ccccchhhHHHHHhhcCCCCccEEeeCCCC
Q 030299 100 GDITNARTAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 100 gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
+|+.+..... ...+++++||+|+++...
T Consensus 149 ~d~~~l~~~~--~~~~~~~~fD~V~~~~~l 176 (383)
T 4fsd_A 149 GFIENLATAE--PEGVPDSSVDIVISNCVC 176 (383)
T ss_dssp SCTTCGGGCB--SCCCCTTCEEEEEEESCG
T ss_pred ccHHHhhhcc--cCCCCCCCEEEEEEccch
Confidence 9999852100 001456789999998754
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=2.5e-08 Score=82.39 Aligned_cols=69 Identities=19% Similarity=0.140 Sum_probs=55.5
Q ss_pred CCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCC-CeeEEeccccch
Q 030299 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNA 105 (179)
Q Consensus 38 ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~-~v~~i~gDi~~~ 105 (179)
.+++|.+|||+|||+|+++..+++..+ .+|+|+|+++.. .+. .++++++|+++.
T Consensus 122 ~~~~~~~VLDlgcG~G~~~~~la~~~~--------------~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~ 187 (278)
T 2frn_A 122 VAKPDELVVDMFAGIGHLSLPIAVYGK--------------AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDF 187 (278)
T ss_dssp HCCTTCEEEETTCTTTTTHHHHHHHTC--------------CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTC
T ss_pred hCCCCCEEEEecccCCHHHHHHHHhCC--------------CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHh
Confidence 357899999999999999999998743 379999999831 233 388999999986
Q ss_pred hhHHHHHhhcCCCCccEEeeCCCC
Q 030299 106 RTAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 106 ~~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
. .+..||+|++|..+
T Consensus 188 ~---------~~~~fD~Vi~~~p~ 202 (278)
T 2frn_A 188 P---------GENIADRILMGYVV 202 (278)
T ss_dssp C---------CCSCEEEEEECCCS
T ss_pred c---------ccCCccEEEECCch
Confidence 4 24689999998653
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.69 E-value=4.8e-08 Score=78.22 Aligned_cols=66 Identities=20% Similarity=0.114 Sum_probs=54.0
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC--------CCCCCeeEEeccccchhhHHHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM--------APIEGVIQVQGDITNARTAEVVI 112 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~--------~~~~~v~~i~gDi~~~~~~~~l~ 112 (179)
++.+|||||||+|.++..++++.. ..|+|+|+++. ....++.++++|+.+.+
T Consensus 44 ~~~~vLD~GcG~G~~~~~l~~~~~--------------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~------ 103 (253)
T 3g5l_A 44 NQKTVLDLGCGFGWHCIYAAEHGA--------------KKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIA------ 103 (253)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTC--------------SEEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCC------
T ss_pred CCCEEEEECCCCCHHHHHHHHcCC--------------CEEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCC------
Confidence 788999999999999999988732 38999999983 12468999999998764
Q ss_pred hhcCCCCccEEeeCCC
Q 030299 113 RHFDGCKADLVVCDGA 128 (179)
Q Consensus 113 ~~~~~~~~D~VlsD~~ 128 (179)
+++++||+|++...
T Consensus 104 --~~~~~fD~v~~~~~ 117 (253)
T 3g5l_A 104 --IEPDAYNVVLSSLA 117 (253)
T ss_dssp --CCTTCEEEEEEESC
T ss_pred --CCCCCeEEEEEchh
Confidence 34578999999764
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=98.69 E-value=6.5e-08 Score=77.35 Aligned_cols=73 Identities=21% Similarity=0.262 Sum_probs=57.0
Q ss_pred HHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEe
Q 030299 32 IDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQ 99 (179)
Q Consensus 32 id~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~ 99 (179)
+.+... ++++.+|||||||+|.++..++++.+ ..|+|+|+++.. .+ .++++++
T Consensus 28 l~~~~~-~~~~~~VLDiGcG~G~~~~~la~~~~--------------~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~ 92 (256)
T 1nkv_A 28 LGRVLR-MKPGTRILDLGSGSGEMLCTWARDHG--------------ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIH 92 (256)
T ss_dssp HHHHTC-CCTTCEEEEETCTTCHHHHHHHHHTC--------------CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE
T ss_pred HHHhcC-CCCCCEEEEECCCCCHHHHHHHHhcC--------------CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEE
Confidence 334444 47899999999999999999999864 689999999821 22 4799999
Q ss_pred ccccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 100 GDITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 100 gDi~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
+|+.+.+ + ++.||+|++...
T Consensus 93 ~d~~~~~--------~-~~~fD~V~~~~~ 112 (256)
T 1nkv_A 93 NDAAGYV--------A-NEKCDVAACVGA 112 (256)
T ss_dssp SCCTTCC--------C-SSCEEEEEEESC
T ss_pred CChHhCC--------c-CCCCCEEEECCC
Confidence 9998864 2 468999998543
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=1.7e-08 Score=82.26 Aligned_cols=101 Identities=15% Similarity=0.093 Sum_probs=57.6
Q ss_pred CCCCchHHHHHHhhCCcchhhh---cHHhHHHHh------CCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCC
Q 030299 6 RDKRDIYYRKAKEEGWRARSAF---KLLQIDEEF------NIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREG 76 (179)
Q Consensus 6 ~~~~d~y~~~a~~~~~~sRaa~---KL~eid~~~------~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~ 76 (179)
+...+.|-+.+ ...+..|... .+.++.+.. ..+.++.+|||||||+|.++..++.. +
T Consensus 21 ~~~~~~y~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~------------ 86 (298)
T 1ri5_A 21 EEIREHYNSIR-ERGRESRQRSKTINIRNANNFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERA-G------------ 86 (298)
T ss_dssp ---------------------CCSHHHHHHHHHHHHHHHHHHCCTTCEEEEETCTTTTTHHHHHHH-T------------
T ss_pred HHHHHHHHHhh-cccccccccchhhhHHHHHHHHHHHHHHHhCCCCCeEEEECCCCCHHHHHHHHC-C------------
Confidence 44556664443 4455555542 333332221 12478899999999999999998776 3
Q ss_pred CCCeEEEEeCCCCC-----------CC-CCeeEEeccccchhhHHHHHhhc-CCCCccEEeeCCCC
Q 030299 77 DLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNARTAEVVIRHF-DGCKADLVVCDGAP 129 (179)
Q Consensus 77 ~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~~~~~l~~~~-~~~~~D~VlsD~~~ 129 (179)
...|+|+|+++.. .. .++.++++|+.+.+ + .++.||+|++....
T Consensus 87 -~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~~fD~v~~~~~l 143 (298)
T 1ri5_A 87 -IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRH--------MDLGKEFDVISSQFSF 143 (298)
T ss_dssp -CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSC--------CCCSSCEEEEEEESCG
T ss_pred -CCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccc--------cCCCCCcCEEEECchh
Confidence 3699999999831 11 36899999998864 2 35689999998653
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=3.7e-08 Score=81.94 Aligned_cols=68 Identities=13% Similarity=0.111 Sum_probs=55.6
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNAR 106 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~ 106 (179)
+.++.+|||+|||+|.++..++++.+ ..|+|+|+++.. .+ .+++++.+|+.+.+
T Consensus 115 ~~~~~~vLDiGcG~G~~~~~la~~~~--------------~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 180 (312)
T 3vc1_A 115 AGPDDTLVDAGCGRGGSMVMAHRRFG--------------SRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTP 180 (312)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHC--------------CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHcC--------------CEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCC
Confidence 46789999999999999999999864 689999999831 12 37999999998864
Q ss_pred hHHHHHhhcCCCCccEEeeCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
++++.||+|++...
T Consensus 181 --------~~~~~fD~V~~~~~ 194 (312)
T 3vc1_A 181 --------FDKGAVTASWNNES 194 (312)
T ss_dssp --------CCTTCEEEEEEESC
T ss_pred --------CCCCCEeEEEECCc
Confidence 45678999998654
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=98.68 E-value=1.6e-08 Score=81.17 Aligned_cols=70 Identities=13% Similarity=0.037 Sum_probs=54.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
+++.+|||||||+|.++..++...+ ..+|+|+|+++.. .+++++++++|+.+....
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~-------------~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 135 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFP-------------HLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQR 135 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCT-------------TCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTC
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCC-------------CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhccc
Confidence 5788999999999999999998644 5799999999821 346799999999775310
Q ss_pred HHHHhhcCCCCccEEeeCC
Q 030299 109 EVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~ 127 (179)
. ....+||+|+++.
T Consensus 136 ----~-~~~~~fD~V~~~~ 149 (240)
T 1xdz_A 136 ----K-DVRESYDIVTARA 149 (240)
T ss_dssp ----T-TTTTCEEEEEEEC
T ss_pred ----c-cccCCccEEEEec
Confidence 0 0135899999976
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=2.5e-08 Score=78.76 Aligned_cols=71 Identities=15% Similarity=0.137 Sum_probs=56.6
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------C-------CCCeeEEeccc
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-------IEGVIQVQGDI 102 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~-------~~~v~~i~gDi 102 (179)
++++.+|||+|||+|.++..+++..++ .++|+|+|+++.. . ..++.++++|+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~------------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~ 142 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGC------------TGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDG 142 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCT------------TCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCG
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCC------------CcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCc
Confidence 578899999999999999999998753 4799999999831 1 34799999999
Q ss_pred cchhhHHHHHhhcCCCCccEEeeCCCC
Q 030299 103 TNARTAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 103 ~~~~~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
.+... ...+||+|+++..+
T Consensus 143 ~~~~~--------~~~~fD~i~~~~~~ 161 (226)
T 1i1n_A 143 RMGYA--------EEAPYDAIHVGAAA 161 (226)
T ss_dssp GGCCG--------GGCCEEEEEECSBB
T ss_pred ccCcc--------cCCCcCEEEECCch
Confidence 86431 23579999998764
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.68 E-value=4.1e-08 Score=74.54 Aligned_cols=69 Identities=19% Similarity=0.178 Sum_probs=53.0
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNAR 106 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~ 106 (179)
+.++.+|||+|||+|.++..++++ + ...|+|+|+++.. .+ .+++++++|+.+..
T Consensus 29 ~~~~~~vLDlGcG~G~~~~~l~~~-~-------------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 94 (177)
T 2esr_A 29 YFNGGRVLDLFAGSGGLAIEAVSR-G-------------MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAI 94 (177)
T ss_dssp CCCSCEEEEETCTTCHHHHHHHHT-T-------------CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHH
T ss_pred hcCCCeEEEeCCCCCHHHHHHHHc-C-------------CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhH
Confidence 357889999999999999999886 3 4699999999831 12 36889999998742
Q ss_pred hHHHHHhhcCCCCccEEeeCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
. .. ...||+|++|..
T Consensus 95 ~------~~-~~~fD~i~~~~~ 109 (177)
T 2esr_A 95 D------CL-TGRFDLVFLDPP 109 (177)
T ss_dssp H------HB-CSCEEEEEECCS
T ss_pred H------hh-cCCCCEEEECCC
Confidence 1 12 346999999864
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=98.68 E-value=5.1e-08 Score=76.84 Aligned_cols=66 Identities=18% Similarity=0.077 Sum_probs=53.2
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCC-CeeEEeccccchh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNAR 106 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~-~v~~i~gDi~~~~ 106 (179)
+.++.+|||||||+|.++..++++ + .+|+|+|+++.. ..+ +++++++|+.+..
T Consensus 53 ~~~~~~vLDlGcG~G~~~~~la~~-~--------------~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~ 117 (204)
T 3njr_A 53 PRRGELLWDIGGGSGSVSVEWCLA-G--------------GRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAAL 117 (204)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHT-T--------------CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGG
T ss_pred CCCCCEEEEecCCCCHHHHHHHHc-C--------------CEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhc
Confidence 367899999999999999999987 3 689999999831 245 8999999998732
Q ss_pred hHHHHHhhcCCCCccEEeeCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~ 127 (179)
. ....||+|++++
T Consensus 118 ~--------~~~~~D~v~~~~ 130 (204)
T 3njr_A 118 A--------DLPLPEAVFIGG 130 (204)
T ss_dssp T--------TSCCCSEEEECS
T ss_pred c--------cCCCCCEEEECC
Confidence 1 124799999886
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=5.6e-08 Score=79.61 Aligned_cols=68 Identities=13% Similarity=0.023 Sum_probs=53.9
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC--------CC--------------------
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM--------AP-------------------- 91 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~--------~~-------------------- 91 (179)
.++.+|||+|||+|..+.+++++ + ..|+|+|+++. ..
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~-G--------------~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADR-G--------------HTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSS 131 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT-T--------------CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEET
T ss_pred CCCCeEEEeCCCCcHHHHHHHHC-C--------------CeEEEEECCHHHHHHHHHhcccccccccccccccccccccC
Confidence 57889999999999999999986 3 68999999982 11
Q ss_pred CCCeeEEeccccchhhHHHHHhhcCCCCccEEeeCCCC
Q 030299 92 IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 92 ~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
..+++++++|+++.+.. ..++||+|++.++.
T Consensus 132 ~~~i~~~~~D~~~l~~~-------~~~~FD~V~~~~~l 162 (252)
T 2gb4_A 132 SGSISLYCCSIFDLPRA-------NIGKFDRIWDRGAL 162 (252)
T ss_dssp TSSEEEEESCTTTGGGG-------CCCCEEEEEESSST
T ss_pred CCceEEEECccccCCcc-------cCCCEEEEEEhhhh
Confidence 15789999999987521 12689999987654
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=98.67 E-value=5.4e-08 Score=78.65 Aligned_cols=68 Identities=16% Similarity=0.125 Sum_probs=55.2
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNAR 106 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~ 106 (179)
+.++.+|||||||+|.++..++++.+ ..|+|+|+++.. .+ .++.++.+|+.+.+
T Consensus 59 ~~~~~~vLDiGcG~G~~~~~l~~~~~--------------~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 124 (273)
T 3bus_A 59 VRSGDRVLDVGCGIGKPAVRLATARD--------------VRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLP 124 (273)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHSC--------------CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcC--------------CEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCC
Confidence 36889999999999999999998753 799999999831 12 36999999998864
Q ss_pred hHHHHHhhcCCCCccEEeeCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
+++++||+|++...
T Consensus 125 --------~~~~~fD~v~~~~~ 138 (273)
T 3bus_A 125 --------FEDASFDAVWALES 138 (273)
T ss_dssp --------SCTTCEEEEEEESC
T ss_pred --------CCCCCccEEEEech
Confidence 45578999998654
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.67 E-value=6e-08 Score=75.10 Aligned_cols=66 Identities=27% Similarity=0.384 Sum_probs=53.6
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------C-CCCeeEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~-~~~v~~i~gDi~~~~~ 107 (179)
+++ +|||+|||+|.++..++++ + ...|+|+|+++.. . .+++.++++|+.+.+
T Consensus 43 ~~~-~vLdiG~G~G~~~~~l~~~-~-------------~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~- 106 (219)
T 3dlc_A 43 TAG-TCIDIGSGPGALSIALAKQ-S-------------DFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIP- 106 (219)
T ss_dssp CEE-EEEEETCTTSHHHHHHHHH-S-------------EEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCS-
T ss_pred CCC-EEEEECCCCCHHHHHHHHc-C-------------CCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCC-
Confidence 455 9999999999999999998 3 4799999999831 1 247999999998864
Q ss_pred HHHHHhhcCCCCccEEeeCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~ 128 (179)
++++.||+|++...
T Consensus 107 -------~~~~~~D~v~~~~~ 120 (219)
T 3dlc_A 107 -------IEDNYADLIVSRGS 120 (219)
T ss_dssp -------SCTTCEEEEEEESC
T ss_pred -------CCcccccEEEECch
Confidence 45678999999764
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=98.67 E-value=9.4e-08 Score=76.41 Aligned_cols=68 Identities=15% Similarity=0.012 Sum_probs=55.0
Q ss_pred CCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC----------CCCCCeeEEeccccchhh
Q 030299 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM----------APIEGVIQVQGDITNART 107 (179)
Q Consensus 38 ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~----------~~~~~v~~i~gDi~~~~~ 107 (179)
.+.++.+|||||||+|.++..++++ ...|+|+|+++. ...+++.++++|+.+.+
T Consensus 36 ~~~~~~~vLDiG~G~G~~~~~l~~~---------------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~- 99 (263)
T 2yqz_A 36 PKGEEPVFLELGVGTGRIALPLIAR---------------GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIP- 99 (263)
T ss_dssp CSSSCCEEEEETCTTSTTHHHHHTT---------------TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCC-
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHC---------------CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCC-
Confidence 3578899999999999999999875 268999999983 12468999999998754
Q ss_pred HHHHHhhcCCCCccEEeeCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~ 128 (179)
++++.||+|++...
T Consensus 100 -------~~~~~fD~v~~~~~ 113 (263)
T 2yqz_A 100 -------LPDESVHGVIVVHL 113 (263)
T ss_dssp -------SCTTCEEEEEEESC
T ss_pred -------CCCCCeeEEEECCc
Confidence 35568999999654
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=6.9e-08 Score=84.93 Aligned_cols=75 Identities=20% Similarity=0.242 Sum_probs=58.2
Q ss_pred CCCCEEEEEccC------CChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--CCCCeeEEeccccchhhHHHH
Q 030299 40 EGVKRVVDLCAA------PGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--PIEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 40 ~~g~~VlDLgag------pGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--~~~~v~~i~gDi~~~~~~~~l 111 (179)
.++.+||||||| +|+++..++.+..+ .++|+|+|+++.. ..++++++++|+.+.+...++
T Consensus 215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP------------~a~V~GVDiSp~m~~~~~rI~fv~GDa~dlpf~~~l 282 (419)
T 3sso_A 215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFP------------RGQIYGLDIMDKSHVDELRIRTIQGDQNDAEFLDRI 282 (419)
T ss_dssp TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCT------------TCEEEEEESSCCGGGCBTTEEEEECCTTCHHHHHHH
T ss_pred CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCC------------CCEEEEEECCHHHhhcCCCcEEEEecccccchhhhh
Confidence 467899999999 78888877776532 5899999999953 246899999999998765444
Q ss_pred HhhcCCCCccEEeeCCC
Q 030299 112 IRHFDGCKADLVVCDGA 128 (179)
Q Consensus 112 ~~~~~~~~~D~VlsD~~ 128 (179)
... .++||+|++|+.
T Consensus 283 ~~~--d~sFDlVisdgs 297 (419)
T 3sso_A 283 ARR--YGPFDIVIDDGS 297 (419)
T ss_dssp HHH--HCCEEEEEECSC
T ss_pred hcc--cCCccEEEECCc
Confidence 432 358999999874
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.4e-07 Score=77.00 Aligned_cols=80 Identities=13% Similarity=0.084 Sum_probs=57.6
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CC-----CC-CeeEEecccc
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------AP-----IE-GVIQVQGDIT 103 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~~-----~~-~v~~i~gDi~ 103 (179)
..++.+|||||||+|.++..++++.+ ...|+|+|+++. .. .. +++++++|+.
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~-------------~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~ 100 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLE-------------KAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVT 100 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCT-------------TEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTT
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCC-------------CCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHH
Confidence 45788999999999999999999875 479999999983 11 12 4889999998
Q ss_pred chhhHHHHHhhcCCCCccEEeeCCCCCCC
Q 030299 104 NARTAEVVIRHFDGCKADLVVCDGAPDVT 132 (179)
Q Consensus 104 ~~~~~~~l~~~~~~~~~D~VlsD~~~~~~ 132 (179)
+... ......++..+||+|++|.+....
T Consensus 101 ~~~~-~~~~~~~~~~~fD~Vv~nPPy~~~ 128 (260)
T 2ozv_A 101 LRAK-ARVEAGLPDEHFHHVIMNPPYNDA 128 (260)
T ss_dssp CCHH-HHHHTTCCTTCEEEEEECCCC---
T ss_pred HHhh-hhhhhccCCCCcCEEEECCCCcCC
Confidence 8631 111112455789999999654433
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.66 E-value=2.3e-08 Score=78.47 Aligned_cols=68 Identities=13% Similarity=0.046 Sum_probs=52.9
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCC--CCeeEEeccccchhh
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------API--EGVIQVQGDITNART 107 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~--~~v~~i~gDi~~~~~ 107 (179)
++.+|||+|||+|.++..++.+. ...|+|+|+++. ... ++++++++|+.+...
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~--------------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~ 118 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQ--------------AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLK 118 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT--------------CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTT
T ss_pred CCCeEEEcCCccCHHHHHHHHcc--------------CCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHH
Confidence 67899999999999999877763 368999999983 123 589999999987421
Q ss_pred HHHHHhhcCCCC-ccEEeeCCC
Q 030299 108 AEVVIRHFDGCK-ADLVVCDGA 128 (179)
Q Consensus 108 ~~~l~~~~~~~~-~D~VlsD~~ 128 (179)
.+.+++ ||+|++|.+
T Consensus 119 ------~~~~~~~fD~I~~~~~ 134 (201)
T 2ift_A 119 ------QPQNQPHFDVVFLDPP 134 (201)
T ss_dssp ------SCCSSCCEEEEEECCC
T ss_pred ------hhccCCCCCEEEECCC
Confidence 122467 999999876
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.66 E-value=3.6e-08 Score=76.28 Aligned_cols=68 Identities=18% Similarity=0.235 Sum_probs=54.8
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CCCCCeeEEeccccchhhHH
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~~~~~v~~i~gDi~~~~~~~ 109 (179)
++++.+|||+|||+|.++..++++.. ..|+|+|+++. ...+++.++++|+.+.+
T Consensus 40 ~~~~~~vLdiGcG~G~~~~~l~~~~~--------------~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~--- 102 (215)
T 2pxx_A 40 LRPEDRILVLGCGNSALSYELFLGGF--------------PNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLD--- 102 (215)
T ss_dssp CCTTCCEEEETCTTCSHHHHHHHTTC--------------CCEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCC---
T ss_pred cCCCCeEEEECCCCcHHHHHHHHcCC--------------CcEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCC---
Confidence 57889999999999999999988632 38999999983 12358999999998853
Q ss_pred HHHhhcCCCCccEEeeCCC
Q 030299 110 VVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~ 128 (179)
++++.||+|++++.
T Consensus 103 -----~~~~~fD~v~~~~~ 116 (215)
T 2pxx_A 103 -----FPSASFDVVLEKGT 116 (215)
T ss_dssp -----SCSSCEEEEEEESH
T ss_pred -----CCCCcccEEEECcc
Confidence 34568999998764
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=1.1e-07 Score=81.13 Aligned_cols=67 Identities=13% Similarity=0.235 Sum_probs=54.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCC-CeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIE-GVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~-~v~~i~gDi~~~~~~ 108 (179)
.++.+|||||||+|.++..++++ + ..+|+|+|++++. ... .++++++|+.+.+
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~-g-------------~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-- 128 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKA-G-------------ARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVE-- 128 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHT-T-------------CSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCC--
T ss_pred CCCCEEEEEeccchHHHHHHHHC-C-------------CCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHcc--
Confidence 57889999999999999999987 4 3699999999841 123 3899999999864
Q ss_pred HHHHhhcCCCCccEEeeCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~ 128 (179)
+++++||+|+++..
T Consensus 129 ------~~~~~fD~Iis~~~ 142 (349)
T 3q7e_A 129 ------LPVEKVDIIISEWM 142 (349)
T ss_dssp ------CSSSCEEEEEECCC
T ss_pred ------CCCCceEEEEEccc
Confidence 45578999999864
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=6.9e-08 Score=80.98 Aligned_cols=79 Identities=23% Similarity=0.203 Sum_probs=60.1
Q ss_pred hHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEe
Q 030299 31 QIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQ 99 (179)
Q Consensus 31 eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~ 99 (179)
.+.+... ++++.+|||+|||+|.++..+++..+. .++|+|+|+++.. .+++++++.
T Consensus 66 ~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~------------~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~ 132 (317)
T 1dl5_A 66 LFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGE------------KGLVVSVEYSRKICEIAKRNVERLGIENVIFVC 132 (317)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCT------------TCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred HHHHhcC-CCCcCEEEEecCCchHHHHHHHHhcCC------------CCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEE
Confidence 3334443 478999999999999999999998652 3789999999831 346799999
Q ss_pred ccccchhhHHHHHhhcCCCCccEEeeCCCCC
Q 030299 100 GDITNARTAEVVIRHFDGCKADLVVCDGAPD 130 (179)
Q Consensus 100 gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~ 130 (179)
+|+.+... ..++||+|+++....
T Consensus 133 ~d~~~~~~--------~~~~fD~Iv~~~~~~ 155 (317)
T 1dl5_A 133 GDGYYGVP--------EFSPYDVIFVTVGVD 155 (317)
T ss_dssp SCGGGCCG--------GGCCEEEEEECSBBS
T ss_pred CChhhccc--------cCCCeEEEEEcCCHH
Confidence 99987431 235799999997653
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=98.66 E-value=4e-08 Score=77.45 Aligned_cols=65 Identities=14% Similarity=0.212 Sum_probs=51.6
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CCC-CeeEEeccccchhhHHHHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIE-GVIQVQGDITNARTAEVVI 112 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~~-~v~~i~gDi~~~~~~~~l~ 112 (179)
.++.+|||||||+|.++..++++. ..|+|+|+++.. ..+ ++.++++|+.+..
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~---------------~~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~------ 99 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHF---------------NDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQ------ 99 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTC---------------SCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCC------
T ss_pred cCCCcEEEECCCCCHHHHHHHHhC---------------CcEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcC------
Confidence 467799999999999999998752 479999999831 122 8999999998752
Q ss_pred hhcCCCCccEEeeCCC
Q 030299 113 RHFDGCKADLVVCDGA 128 (179)
Q Consensus 113 ~~~~~~~~D~VlsD~~ 128 (179)
++++||+|++...
T Consensus 100 ---~~~~fD~v~~~~~ 112 (250)
T 2p7i_A 100 ---LPRRYDNIVLTHV 112 (250)
T ss_dssp ---CSSCEEEEEEESC
T ss_pred ---cCCcccEEEEhhH
Confidence 3568999998764
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=7.9e-08 Score=73.62 Aligned_cols=66 Identities=18% Similarity=0.155 Sum_probs=53.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
.++.+|||+|||+|.++..++++ + ..|+|+|+++.. ..+++.++++|+.+.+
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~-~--------------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~-- 93 (199)
T 2xvm_A 31 VKPGKTLDLGCGNGRNSLYLAAN-G--------------YDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLT-- 93 (199)
T ss_dssp SCSCEEEEETCTTSHHHHHHHHT-T--------------CEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCC--
T ss_pred cCCCeEEEEcCCCCHHHHHHHHC-C--------------CeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCC--
Confidence 46679999999999999999886 3 689999999831 2457999999998854
Q ss_pred HHHHhhcCCCCccEEeeCCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~ 129 (179)
+ +.+||+|++....
T Consensus 94 ------~-~~~~D~v~~~~~l 107 (199)
T 2xvm_A 94 ------F-DRQYDFILSTVVL 107 (199)
T ss_dssp ------C-CCCEEEEEEESCG
T ss_pred ------C-CCCceEEEEcchh
Confidence 3 4689999987643
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.65 E-value=3.7e-08 Score=74.19 Aligned_cols=65 Identities=18% Similarity=0.255 Sum_probs=53.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
.++.+|||+|||+|.++..+++ + ...|+|+|+++.. ..++++++++|+.+.
T Consensus 34 ~~~~~vLdiG~G~G~~~~~l~~--~-------------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~--- 95 (183)
T 2yxd_A 34 NKDDVVVDVGCGSGGMTVEIAK--R-------------CKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDV--- 95 (183)
T ss_dssp CTTCEEEEESCCCSHHHHHHHT--T-------------SSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHH---
T ss_pred CCCCEEEEeCCCCCHHHHHHHh--c-------------CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCcccc---
Confidence 6788999999999999999987 3 4799999999831 236799999999872
Q ss_pred HHHHhhcCCCCccEEeeCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~ 128 (179)
+++..||+|+++..
T Consensus 96 ------~~~~~~D~i~~~~~ 109 (183)
T 2yxd_A 96 ------LDKLEFNKAFIGGT 109 (183)
T ss_dssp ------GGGCCCSEEEECSC
T ss_pred ------ccCCCCcEEEECCc
Confidence 23358999999876
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.65 E-value=1.1e-07 Score=73.81 Aligned_cols=67 Identities=18% Similarity=0.122 Sum_probs=53.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
.++.+|||+|||+|.++..++++ + ...|+|+|+++.. .. +++++++|+.+.+
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~-~-------------~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~-- 110 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLL-G-------------AKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEFN-- 110 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHT-T-------------CSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGCC--
T ss_pred CCcCEEEEeeCCCCHHHHHHHHc-C-------------CCEEEEEECCHHHHHHHHHHHHHcCC-CEEEEECchHHcC--
Confidence 46889999999999999999886 3 2589999999831 12 7899999998742
Q ss_pred HHHHhhcCCCCccEEeeCCCCCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGAPDVT 132 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~~~~ 132 (179)
..||+|++|.+....
T Consensus 111 ---------~~~D~v~~~~p~~~~ 125 (207)
T 1wy7_A 111 ---------SRVDIVIMNPPFGSQ 125 (207)
T ss_dssp ---------CCCSEEEECCCCSSS
T ss_pred ---------CCCCEEEEcCCCccc
Confidence 379999999875443
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=98.65 E-value=4.4e-08 Score=77.51 Aligned_cols=75 Identities=17% Similarity=0.185 Sum_probs=54.9
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~~ 107 (179)
.++.+|||||||+|.++.++++.++. .++|+++|+++.. .. .+++++++|+.+...
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~------------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~ 124 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQP------------GARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIP 124 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSCT------------TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGG
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCC------------CCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHH
Confidence 46789999999999999999987653 5899999999831 22 359999999876321
Q ss_pred HHHHHhhcCCCCccEEeeCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~ 128 (179)
.+...+..++||+|++|+.
T Consensus 125 --~~~~~~~~~~fD~V~~d~~ 143 (221)
T 3u81_A 125 --QLKKKYDVDTLDMVFLDHW 143 (221)
T ss_dssp --GTTTTSCCCCCSEEEECSC
T ss_pred --HHHHhcCCCceEEEEEcCC
Confidence 0111112258999999974
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=3.5e-08 Score=77.12 Aligned_cols=66 Identities=18% Similarity=0.222 Sum_probs=53.5
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CCCCCeeEEeccccchhhHH
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~~~~~v~~i~gDi~~~~~~~ 109 (179)
..++.+|||+|||+|.++..++++. ..|+|+|+++. ...++++++++|+.+..
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~---------------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~--- 110 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHC---------------KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFS--- 110 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGE---------------EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCC---
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcC---------------CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCC---
Confidence 3567899999999999999998763 58999999983 12357999999998864
Q ss_pred HHHhhcCCCCccEEeeCCC
Q 030299 110 VVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~ 128 (179)
++++||+|++...
T Consensus 111 ------~~~~fD~v~~~~~ 123 (216)
T 3ofk_A 111 ------TAELFDLIVVAEV 123 (216)
T ss_dssp ------CSCCEEEEEEESC
T ss_pred ------CCCCccEEEEccH
Confidence 3468999999753
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.65 E-value=5.7e-08 Score=79.66 Aligned_cols=69 Identities=14% Similarity=0.137 Sum_probs=55.6
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------------CCCCeeEEeccccchh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PIEGVIQVQGDITNAR 106 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------------~~~~v~~i~gDi~~~~ 106 (179)
++++.+|||+|||+|.++..+++.+.+ ...|+|+|+++.. ..++++++++|+.+.
T Consensus 108 ~~~~~~VLD~G~G~G~~~~~la~~~~~------------~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~- 174 (275)
T 1yb2_A 108 LRPGMDILEVGVGSGNMSSYILYALNG------------KGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF- 174 (275)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHTT------------SSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-
T ss_pred CCCcCEEEEecCCCCHHHHHHHHHcCC------------CCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhcc-
Confidence 367899999999999999999998542 5799999999831 235799999999873
Q ss_pred hHHHHHhhcCCCCccEEeeCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
+++.+||+|++|..
T Consensus 175 --------~~~~~fD~Vi~~~~ 188 (275)
T 1yb2_A 175 --------ISDQMYDAVIADIP 188 (275)
T ss_dssp --------CCSCCEEEEEECCS
T ss_pred --------CcCCCccEEEEcCc
Confidence 34568999999753
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=98.65 E-value=3.6e-08 Score=80.95 Aligned_cols=69 Identities=20% Similarity=0.143 Sum_probs=55.9
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhH
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~ 108 (179)
+.++.+|||||||+|.|+..++++.+. ...|+|+|+++.. ...+++++++|+.+.+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~------------~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~-- 85 (284)
T 3gu3_A 20 ITKPVHIVDYGCGYGYLGLVLMPLLPE------------GSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIE-- 85 (284)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCT------------TCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCC--
T ss_pred cCCCCeEEEecCCCCHHHHHHHHhCCC------------CCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcC--
Confidence 467889999999999999999988752 4799999999831 1238999999999854
Q ss_pred HHHHhhcCCCCccEEeeCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~ 128 (179)
+ +.+||+|++...
T Consensus 86 ------~-~~~fD~v~~~~~ 98 (284)
T 3gu3_A 86 ------L-NDKYDIAICHAF 98 (284)
T ss_dssp ------C-SSCEEEEEEESC
T ss_pred ------c-CCCeeEEEECCh
Confidence 2 358999999874
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=9.1e-08 Score=78.09 Aligned_cols=66 Identities=15% Similarity=0.065 Sum_probs=53.3
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------C-CCCeeEEeccccchh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQVQGDITNAR 106 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~-~~~v~~i~gDi~~~~ 106 (179)
+.++.+|||||||+|.++..++++.+ ..|+|+|+++.. . .+++.++++|+.+.
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~~--------------~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~- 126 (287)
T 1kpg_A 62 LQPGMTLLDVGCGWGATMMRAVEKYD--------------VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF- 126 (287)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHC--------------CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC-
T ss_pred CCCcCEEEEECCcccHHHHHHHHHcC--------------CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhC-
Confidence 36789999999999999999997764 599999999831 1 24789999998653
Q ss_pred hHHHHHhhcCCCCccEEeeCCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
+ ++||+|++....
T Consensus 127 ---------~-~~fD~v~~~~~l 139 (287)
T 1kpg_A 127 ---------D-EPVDRIVSIGAF 139 (287)
T ss_dssp ---------C-CCCSEEEEESCG
T ss_pred ---------C-CCeeEEEEeCch
Confidence 3 589999987653
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=98.65 E-value=4.6e-08 Score=75.93 Aligned_cols=65 Identities=18% Similarity=0.108 Sum_probs=53.2
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~~ 109 (179)
++.+|||+|||+|.++..++...+ ...|+|+|+++.. ..++++++++|+.+..
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~-------------~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--- 128 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRP-------------EAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP--- 128 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCT-------------TSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC---
T ss_pred CCCeEEEECCCCCHHHHHHHHHCC-------------CCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC---
Confidence 578999999999999999998865 5799999999831 2456999999998753
Q ss_pred HHHhhcCCCCccEEeeCC
Q 030299 110 VVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~ 127 (179)
+..+||+|+++.
T Consensus 129 ------~~~~~D~i~~~~ 140 (207)
T 1jsx_A 129 ------SEPPFDGVISRA 140 (207)
T ss_dssp ------CCSCEEEEECSC
T ss_pred ------ccCCcCEEEEec
Confidence 235899999864
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.6e-08 Score=80.73 Aligned_cols=68 Identities=12% Similarity=0.038 Sum_probs=52.8
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhH
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~ 108 (179)
.+++.+|||||||+|.++..+++.. ...|+|+|+++.. ...++.++++|+.+..
T Consensus 58 ~~~~~~vLDiGcGtG~~~~~l~~~~--------------~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~-- 121 (236)
T 1zx0_A 58 SSKGGRVLEVGFGMAIAASKVQEAP--------------IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVA-- 121 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTSC--------------EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHG--
T ss_pred CCCCCeEEEEeccCCHHHHHHHhcC--------------CCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhh--
Confidence 3678899999999999999996542 2489999999831 1257899999998752
Q ss_pred HHHHhhcCCCCccEEeeC
Q 030299 109 EVVIRHFDGCKADLVVCD 126 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD 126 (179)
..++++.||+|++|
T Consensus 122 ----~~~~~~~fD~V~~d 135 (236)
T 1zx0_A 122 ----PTLPDGHFDGILYD 135 (236)
T ss_dssp ----GGSCTTCEEEEEEC
T ss_pred ----cccCCCceEEEEEC
Confidence 12556789999996
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.64 E-value=3.4e-08 Score=77.58 Aligned_cols=67 Identities=12% Similarity=0.093 Sum_probs=52.6
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~~ 109 (179)
++.+|||||||+|.++..++.+. ...|+|+|+++.. ..++++++++|+.+...
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~--------------~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~-- 117 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRY--------------AAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLA-- 117 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT--------------CSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHS--
T ss_pred CCCeEEEeCCCcCHHHHHHHhcC--------------CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHh--
Confidence 67899999999999999887763 2589999999831 23589999999887421
Q ss_pred HHHhhcCCCCccEEeeCCC
Q 030299 110 VVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~ 128 (179)
.....||+|++|.+
T Consensus 118 -----~~~~~fD~V~~~~p 131 (202)
T 2fpo_A 118 -----QKGTPHNIVFVDPP 131 (202)
T ss_dssp -----SCCCCEEEEEECCS
T ss_pred -----hcCCCCCEEEECCC
Confidence 13458999999876
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=98.64 E-value=5.1e-08 Score=76.53 Aligned_cols=55 Identities=15% Similarity=0.141 Sum_probs=46.5
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------------CCCCCeeEEecccc
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------------APIEGVIQVQGDIT 103 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------------~~~~~v~~i~gDi~ 103 (179)
++++.+|||||||+|.++..++++.+ ..+|+|+|+++. ...++++++++|+.
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p-------------~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~ 91 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNP-------------SRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAE 91 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCT-------------TEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCST
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchh
Confidence 36888999999999999999999864 579999999983 12458999999998
Q ss_pred chh
Q 030299 104 NAR 106 (179)
Q Consensus 104 ~~~ 106 (179)
+.+
T Consensus 92 ~l~ 94 (218)
T 3mq2_A 92 RLP 94 (218)
T ss_dssp TCC
T ss_pred hCC
Confidence 864
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.3e-07 Score=74.63 Aligned_cols=67 Identities=21% Similarity=0.255 Sum_probs=53.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC--------CCCCCeeEEeccccchhhHHHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM--------APIEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~--------~~~~~v~~i~gDi~~~~~~~~l 111 (179)
.++.+|||||||+|.++..++++ + ...|+|+|+++. ....++.++++|+.+.+
T Consensus 42 ~~~~~vLdiG~G~G~~~~~l~~~-~-------------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~----- 102 (243)
T 3bkw_A 42 VGGLRIVDLGCGFGWFCRWAHEH-G-------------ASYVLGLDLSEKMLARARAAGPDTGITYERADLDKLH----- 102 (243)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-T-------------CSEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCC-----
T ss_pred cCCCEEEEEcCcCCHHHHHHHHC-C-------------CCeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhcc-----
Confidence 47889999999999999999886 3 248999999973 12247899999998754
Q ss_pred HhhcCCCCccEEeeCCC
Q 030299 112 IRHFDGCKADLVVCDGA 128 (179)
Q Consensus 112 ~~~~~~~~~D~VlsD~~ 128 (179)
+++.+||+|++...
T Consensus 103 ---~~~~~fD~v~~~~~ 116 (243)
T 3bkw_A 103 ---LPQDSFDLAYSSLA 116 (243)
T ss_dssp ---CCTTCEEEEEEESC
T ss_pred ---CCCCCceEEEEecc
Confidence 34568999998654
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=5.5e-08 Score=77.80 Aligned_cols=71 Identities=6% Similarity=-0.020 Sum_probs=56.7
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~~~v~~i~gDi~~~~~~ 108 (179)
+++.+|||||||+|.++..++++.+ ...|+|+|+++. ..+.|+.++++|+.+..
T Consensus 33 ~~~~~vLDiGcG~G~~~~~lA~~~p-------------~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l-- 97 (218)
T 3dxy_A 33 REAPVTLEIGFGMGASLVAMAKDRP-------------EQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVL-- 97 (218)
T ss_dssp SCCCEEEEESCTTCHHHHHHHHHCT-------------TSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHH--
T ss_pred CCCCeEEEEeeeChHHHHHHHHHCC-------------CCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHH--
Confidence 4678999999999999999999865 578999999983 13578999999998741
Q ss_pred HHHHhhcCCCCccEEeeCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~ 128 (179)
...++++.+|.|++..+
T Consensus 98 ---~~~~~~~~~d~v~~~~~ 114 (218)
T 3dxy_A 98 ---HKMIPDNSLRMVQLFFP 114 (218)
T ss_dssp ---HHHSCTTCEEEEEEESC
T ss_pred ---HHHcCCCChheEEEeCC
Confidence 11256678999998743
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=98.63 E-value=5.2e-08 Score=75.84 Aligned_cols=72 Identities=18% Similarity=0.063 Sum_probs=53.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----CCCCCeeEEeccccchhhHHHHHhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----APIEGVIQVQGDITNARTAEVVIRH 114 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----~~~~~v~~i~gDi~~~~~~~~l~~~ 114 (179)
.++.+|||+|||+|.++..++++ + ..|+|+|+++. ....++.++.+|+.+.... ..
T Consensus 51 ~~~~~vLdiG~G~G~~~~~l~~~-~--------------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~----~~ 111 (227)
T 3e8s_A 51 RQPERVLDLGCGEGWLLRALADR-G--------------IEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEA----KV 111 (227)
T ss_dssp TCCSEEEEETCTTCHHHHHHHTT-T--------------CEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTT----CS
T ss_pred CCCCEEEEeCCCCCHHHHHHHHC-C--------------CEEEEEcCCHHHHHHHHHhcccccchhhHHhhccc----cc
Confidence 45689999999999999999876 3 68999999983 1235677888888775210 01
Q ss_pred cCCCCccEEeeCCCCC
Q 030299 115 FDGCKADLVVCDGAPD 130 (179)
Q Consensus 115 ~~~~~~D~VlsD~~~~ 130 (179)
..+.+||+|++.....
T Consensus 112 ~~~~~fD~v~~~~~l~ 127 (227)
T 3e8s_A 112 PVGKDYDLICANFALL 127 (227)
T ss_dssp CCCCCEEEEEEESCCC
T ss_pred ccCCCccEEEECchhh
Confidence 2344699999976644
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=3.1e-08 Score=79.16 Aligned_cols=67 Identities=22% Similarity=0.283 Sum_probs=54.6
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART 107 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~ 107 (179)
++++.+|||+|||+|.++..++++. ..|+|+|+++.. ..+++.++++|+.+.+
T Consensus 19 ~~~~~~vLDiGcG~G~~~~~l~~~~---------------~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~- 82 (239)
T 1xxl_A 19 CRAEHRVLDIGAGAGHTALAFSPYV---------------QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP- 82 (239)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGGS---------------SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCC-
T ss_pred cCCCCEEEEEccCcCHHHHHHHHhC---------------CEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCC-
Confidence 3788999999999999999998763 589999999831 2468999999998754
Q ss_pred HHHHHhhcCCCCccEEeeCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~ 128 (179)
++++.||+|++...
T Consensus 83 -------~~~~~fD~v~~~~~ 96 (239)
T 1xxl_A 83 -------FPDDSFDIITCRYA 96 (239)
T ss_dssp -------SCTTCEEEEEEESC
T ss_pred -------CCCCcEEEEEECCc
Confidence 45578999999754
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=98.63 E-value=4.7e-08 Score=76.66 Aligned_cols=68 Identities=19% Similarity=0.266 Sum_probs=53.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-----CCeeEEecccc
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-----EGVIQVQGDIT 103 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-----~~v~~i~gDi~ 103 (179)
.++.+|||||||+|.++..++++.+ ...|+|+|+++.. .. .+++++++|+.
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~-------------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 94 (217)
T 3jwh_A 28 SNARRVIDLGCGQGNLLKILLKDSF-------------FEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALT 94 (217)
T ss_dssp TTCCEEEEETCTTCHHHHHHHHCTT-------------CSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTT
T ss_pred cCCCEEEEeCCCCCHHHHHHHhhCC-------------CCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcc
Confidence 4678999999999999999998754 4699999999831 12 27999999987
Q ss_pred chhhHHHHHhhcCCCCccEEeeCCC
Q 030299 104 NARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 104 ~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
..+ ...++||+|++...
T Consensus 95 ~~~--------~~~~~fD~v~~~~~ 111 (217)
T 3jwh_A 95 YQD--------KRFHGYDAATVIEV 111 (217)
T ss_dssp SCC--------GGGCSCSEEEEESC
T ss_pred ccc--------ccCCCcCEEeeHHH
Confidence 654 23368999998654
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.63 E-value=9e-08 Score=74.23 Aligned_cols=65 Identities=20% Similarity=0.146 Sum_probs=53.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CCCCeeEEeccccchhhHHHHHh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
.++.+|||+|||+|.++..+++. + ...|+|+|+++.. ...+++++++|+.+.
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~-~-------------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~-------- 107 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLL-G-------------AESVTAFDIDPDAIETAKRNCGGVNFMVADVSEI-------- 107 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHT-T-------------BSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGC--------
T ss_pred CCCCEEEEEeCCccHHHHHHHHc-C-------------CCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHC--------
Confidence 46789999999999999999886 3 3589999999831 123899999999874
Q ss_pred hcCCCCccEEeeCCCC
Q 030299 114 HFDGCKADLVVCDGAP 129 (179)
Q Consensus 114 ~~~~~~~D~VlsD~~~ 129 (179)
+ ..||+|++|.+.
T Consensus 108 --~-~~~D~v~~~~p~ 120 (200)
T 1ne2_A 108 --S-GKYDTWIMNPPF 120 (200)
T ss_dssp --C-CCEEEEEECCCC
T ss_pred --C-CCeeEEEECCCc
Confidence 2 479999999764
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.4e-07 Score=75.19 Aligned_cols=74 Identities=12% Similarity=0.140 Sum_probs=56.8
Q ss_pred CCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC--------CCCCCeeEEeccccchhhHH
Q 030299 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM--------APIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 38 ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~--------~~~~~v~~i~gDi~~~~~~~ 109 (179)
.++++.+|||||||+|.++..++++. ..|+|+|+++. .+..++.++++|+.+.+...
T Consensus 53 ~~~~~~~vLD~GcG~G~~~~~la~~~---------------~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~ 117 (245)
T 3ggd_A 53 LFNPELPLIDFACGNGTQTKFLSQFF---------------PRVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAA 117 (245)
T ss_dssp TSCTTSCEEEETCTTSHHHHHHHHHS---------------SCEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHH
T ss_pred ccCCCCeEEEEcCCCCHHHHHHHHhC---------------CCEEEEECCHHHHHHHHHhCcccCceEEECccccccccc
Confidence 35788999999999999999999874 47999999983 12348999999999976432
Q ss_pred HHHhhcCCCCccEEeeCCCC
Q 030299 110 VVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~~ 129 (179)
.+.. +..||+|++....
T Consensus 118 ~~~~---~~~~d~v~~~~~~ 134 (245)
T 3ggd_A 118 QIHS---EIGDANIYMRTGF 134 (245)
T ss_dssp HHHH---HHCSCEEEEESSS
T ss_pred cccc---ccCccEEEEcchh
Confidence 2211 1259999998654
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1e-07 Score=80.43 Aligned_cols=74 Identities=18% Similarity=0.156 Sum_probs=56.9
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CC-CCeeEEeccccchhhHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PI-EGVIQVQGDITNARTAE 109 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~~-~~v~~i~gDi~~~~~~~ 109 (179)
+++.+|||+|||+|+++..++++.+ .++|+|+|+++.. .. .+++++++|+.+.+.
T Consensus 25 ~~g~~vLD~g~G~G~~s~~la~~~~-------------~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~-- 89 (301)
T 1m6y_A 25 EDEKIILDCTVGEGGHSRAILEHCP-------------GCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADF-- 89 (301)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCT-------------TCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHH--
T ss_pred CCCCEEEEEeCCcCHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHH--
Confidence 6888999999999999999999874 4799999999831 11 579999999887642
Q ss_pred HHHhhcCCCCccEEeeCCCC
Q 030299 110 VVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~~ 129 (179)
........+||.|++|.+.
T Consensus 90 -~l~~~g~~~~D~Vl~D~gv 108 (301)
T 1m6y_A 90 -LLKTLGIEKVDGILMDLGV 108 (301)
T ss_dssp -HHHHTTCSCEEEEEEECSC
T ss_pred -HHHhcCCCCCCEEEEcCcc
Confidence 1111222479999998754
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=98.63 E-value=3.9e-08 Score=74.18 Aligned_cols=70 Identities=14% Similarity=0.079 Sum_probs=52.8
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCC-CeeEEeccccchh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIE-GVIQVQGDITNAR 106 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~~-~v~~i~gDi~~~~ 106 (179)
+.++.+|||+|||+|.++..++++.+ ..+|+|+|+++. ...+ ++ ++++|..+.-
T Consensus 23 ~~~~~~vldiG~G~G~~~~~l~~~~~-------------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~ 88 (178)
T 3hm2_A 23 PKPHETLWDIGGGSGSIAIEWLRSTP-------------QTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAF 88 (178)
T ss_dssp CCTTEEEEEESTTTTHHHHHHHTTSS-------------SEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGG
T ss_pred ccCCCeEEEeCCCCCHHHHHHHHHCC-------------CCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhh
Confidence 37888999999999999999998864 579999999983 1234 67 8888886521
Q ss_pred hHHHHHhhcCCCCccEEeeCCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
. ...++||+|+++...
T Consensus 89 ~-------~~~~~~D~i~~~~~~ 104 (178)
T 3hm2_A 89 D-------DVPDNPDVIFIGGGL 104 (178)
T ss_dssp G-------GCCSCCSEEEECC-T
T ss_pred h-------ccCCCCCEEEECCcc
Confidence 1 112689999987754
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=98.62 E-value=1e-07 Score=78.17 Aligned_cols=68 Identities=18% Similarity=0.269 Sum_probs=55.8
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNAR 106 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~ 106 (179)
+.++.+|||+|||+|.++..++++.+ ..|+|+|+++.. .+ +++.++++|+.+.+
T Consensus 80 ~~~~~~vLDiGcG~G~~~~~l~~~~~--------------~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 145 (297)
T 2o57_A 80 LQRQAKGLDLGAGYGGAARFLVRKFG--------------VSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP 145 (297)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHC--------------CEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhC--------------CEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCC
Confidence 47889999999999999999999864 689999999831 12 57999999998864
Q ss_pred hHHHHHhhcCCCCccEEeeCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
+++++||+|++...
T Consensus 146 --------~~~~~fD~v~~~~~ 159 (297)
T 2o57_A 146 --------CEDNSYDFIWSQDA 159 (297)
T ss_dssp --------SCTTCEEEEEEESC
T ss_pred --------CCCCCEeEEEecch
Confidence 45678999998754
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=7.8e-08 Score=78.77 Aligned_cols=68 Identities=25% Similarity=0.290 Sum_probs=55.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
.++.+|||+|||+|.++..++...+ ...|+|+|+++.. ..++++++++|+.+.
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~~-------------~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~--- 171 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASERP-------------DCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA--- 171 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCT-------------TSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG---
T ss_pred cCCCEEEEecCCccHHHHHHHHhCC-------------CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhh---
Confidence 5678999999999999999998865 5799999999831 245799999999874
Q ss_pred HHHHhhcCCCCccEEeeCCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~ 129 (179)
++.++||+|+++.+.
T Consensus 172 ------~~~~~fD~Iv~npPy 186 (276)
T 2b3t_A 172 ------LAGQQFAMIVSNPPY 186 (276)
T ss_dssp ------GTTCCEEEEEECCCC
T ss_pred ------cccCCccEEEECCCC
Confidence 224589999998654
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.62 E-value=1e-07 Score=77.22 Aligned_cols=75 Identities=13% Similarity=0.088 Sum_probs=56.1
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~~ 107 (179)
.++.+|||||||+|.++.++++.++. .++|+++|+++.. .+ .+++++++|+.+...
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~~------------~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~ 126 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALPD------------DGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLH 126 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSCT------------TCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHH
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCCC------------CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHH
Confidence 46789999999999999999998753 5899999999841 12 479999999876421
Q ss_pred HHHHHhhcCCCCccEEeeCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~ 128 (179)
.+......++||+|++|+.
T Consensus 127 --~~~~~~~~~~fD~V~~d~~ 145 (242)
T 3r3h_A 127 --SLLNEGGEHQFDFIFIDAD 145 (242)
T ss_dssp --HHHHHHCSSCEEEEEEESC
T ss_pred --HHhhccCCCCEeEEEEcCC
Confidence 1111111368999999974
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.61 E-value=5.9e-08 Score=73.65 Aligned_cols=66 Identities=21% Similarity=0.312 Sum_probs=54.4
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC------CCCCCeeEEeccccchhhHHHHH
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------APIEGVIQVQGDITNARTAEVVI 112 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~------~~~~~v~~i~gDi~~~~~~~~l~ 112 (179)
++++.+|||+|||+|.++..+++. + ..|+|+|+++. +..+++.++++|+.+.+
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~-~--------------~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~------ 102 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQ-G--------------HDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQ------ 102 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHT-T--------------CEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSC------
T ss_pred ccCCCeEEEECCCCCHHHHHHHHC-C--------------CcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCC------
Confidence 578999999999999999999886 3 68999999983 12467899999998854
Q ss_pred hhcCCCCccEEeeCC
Q 030299 113 RHFDGCKADLVVCDG 127 (179)
Q Consensus 113 ~~~~~~~~D~VlsD~ 127 (179)
+++++||+|++++
T Consensus 103 --~~~~~~D~i~~~~ 115 (195)
T 3cgg_A 103 --ISETDFDLIVSAG 115 (195)
T ss_dssp --CCCCCEEEEEECC
T ss_pred --CCCCceeEEEECC
Confidence 3456899999974
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.61 E-value=3.2e-08 Score=79.13 Aligned_cols=67 Identities=22% Similarity=0.285 Sum_probs=55.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CCCCeeEEeccccchhhHHHHHh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
.++.+|||||||+|.++..++++.+ ...|+|+|+++.. ..+++.++++|+.+.+
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~~~-------------~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~------- 91 (259)
T 2p35_A 32 ERVLNGYDLGCGPGNSTELLTDRYG-------------VNVITGIDSDDDMLEKAADRLPNTNFGKADLATWK------- 91 (259)
T ss_dssp SCCSSEEEETCTTTHHHHHHHHHHC-------------TTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-------
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCC-------------CCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-------
Confidence 6788999999999999999999875 4789999999831 2468999999998753
Q ss_pred hcCCCCccEEeeCCC
Q 030299 114 HFDGCKADLVVCDGA 128 (179)
Q Consensus 114 ~~~~~~~D~VlsD~~ 128 (179)
++.+||+|++...
T Consensus 92 --~~~~fD~v~~~~~ 104 (259)
T 2p35_A 92 --PAQKADLLYANAV 104 (259)
T ss_dssp --CSSCEEEEEEESC
T ss_pred --ccCCcCEEEEeCc
Confidence 2468999999654
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.61 E-value=4.5e-08 Score=78.44 Aligned_cols=70 Identities=13% Similarity=0.048 Sum_probs=55.0
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC--CCeeEEeccccchhh
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI--EGVIQVQGDITNART 107 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~--~~v~~i~gDi~~~~~ 107 (179)
++.+|||||||+|..+.++++.+++ .++|+++|+++.. .. .+++++.+|+.+..
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~------------~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l- 122 (221)
T 3dr5_A 56 GSTGAIAITPAAGLVGLYILNGLAD------------NTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVM- 122 (221)
T ss_dssp TCCEEEEESTTHHHHHHHHHHHSCT------------TSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHG-
T ss_pred CCCCEEEEcCCchHHHHHHHHhCCC------------CCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHH-
Confidence 3459999999999999999998753 5899999999831 23 37999999987742
Q ss_pred HHHHHhhcCCCCccEEeeCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~ 128 (179)
..+.+++||+|++|+.
T Consensus 123 -----~~~~~~~fD~V~~d~~ 138 (221)
T 3dr5_A 123 -----SRLANDSYQLVFGQVS 138 (221)
T ss_dssp -----GGSCTTCEEEEEECCC
T ss_pred -----HHhcCCCcCeEEEcCc
Confidence 1233568999999974
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=2.8e-08 Score=78.26 Aligned_cols=74 Identities=15% Similarity=0.151 Sum_probs=55.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCC-CeeEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIE-GVIQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~~-~v~~i~gDi~~~~~ 107 (179)
.++.+|||||||+|.++.++++.+++ .++|+++|+++. .... +++++++|+.+...
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~------------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 124 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLARGLSS------------GGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQ 124 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCS------------SCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHH
T ss_pred hCCCEEEEecCCccHHHHHHHHhCCC------------CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHH
Confidence 56889999999999999999998753 579999999983 1233 49999999976421
Q ss_pred HHHHHhhcCCCCccEEeeCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~ 128 (179)
.+... ...+||+|++|+.
T Consensus 125 --~~~~~-~~~~fD~v~~d~~ 142 (223)
T 3duw_A 125 --QIENE-KYEPFDFIFIDAD 142 (223)
T ss_dssp --HHHHT-TCCCCSEEEECSC
T ss_pred --HHHhc-CCCCcCEEEEcCC
Confidence 12111 1257999999976
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.61 E-value=1.1e-07 Score=80.10 Aligned_cols=72 Identities=17% Similarity=0.150 Sum_probs=54.3
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------------------CCCCee
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------------------PIEGVI 96 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------------------~~~~v~ 96 (179)
+.++.+|||+|||+|.++..+++..++ .++|+|+|+++.. ...+++
T Consensus 103 ~~~g~~VLDiG~G~G~~~~~la~~~g~------------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~ 170 (336)
T 2b25_A 103 INPGDTVLEAGSGSGGMSLFLSKAVGS------------QGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVD 170 (336)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCT------------TCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEE
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCC------------CceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceE
Confidence 478999999999999999999998753 5899999999821 025799
Q ss_pred EEeccccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 97 QVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 97 ~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
++.+|+.+... .+++..||+|++|+.
T Consensus 171 ~~~~d~~~~~~------~~~~~~fD~V~~~~~ 196 (336)
T 2b25_A 171 FIHKDISGATE------DIKSLTFDAVALDML 196 (336)
T ss_dssp EEESCTTCCC-------------EEEEEECSS
T ss_pred EEECChHHccc------ccCCCCeeEEEECCC
Confidence 99999987521 133457999999875
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=9e-08 Score=81.42 Aligned_cols=68 Identities=15% Similarity=0.239 Sum_probs=55.3
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CC-CCeeEEeccccchhh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PI-EGVIQVQGDITNART 107 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~-~~v~~i~gDi~~~~~ 107 (179)
+.++.+|||||||+|.++..++++ + ..+|+|+|+++|. .. ++++++++|+.+.+
T Consensus 62 ~~~~~~VLDiGcGtG~ls~~la~~-g-------------~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~- 126 (340)
T 2fyt_A 62 IFKDKVVLDVGCGTGILSMFAAKA-G-------------AKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVH- 126 (340)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHT-T-------------CSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSC-
T ss_pred hcCCCEEEEeeccCcHHHHHHHHc-C-------------CCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhc-
Confidence 367889999999999999999886 3 3689999999851 12 57999999999864
Q ss_pred HHHHHhhcCCCCccEEeeCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~ 128 (179)
++.++||+|+++..
T Consensus 127 -------~~~~~~D~Ivs~~~ 140 (340)
T 2fyt_A 127 -------LPVEKVDVIISEWM 140 (340)
T ss_dssp -------CSCSCEEEEEECCC
T ss_pred -------CCCCcEEEEEEcCc
Confidence 44568999999864
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.60 E-value=7.3e-08 Score=77.10 Aligned_cols=69 Identities=20% Similarity=0.230 Sum_probs=56.2
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------------CCCCeeEEeccccchh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PIEGVIQVQGDITNAR 106 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------------~~~~v~~i~gDi~~~~ 106 (179)
++++.+|||+|||+|.++..+++.+++ .+.|+++|+++.. ..++++++++|+.+.+
T Consensus 94 ~~~~~~vLdiG~G~G~~~~~l~~~~~~------------~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~ 161 (258)
T 2pwy_A 94 LAPGMRVLEAGTGSGGLTLFLARAVGE------------KGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAE 161 (258)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCT------------TSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCC
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHhCC------------CCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcC
Confidence 478999999999999999999998653 5799999999831 2367999999998753
Q ss_pred hHHHHHhhcCCCCccEEeeCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~ 127 (179)
+++..||+|++|.
T Consensus 162 --------~~~~~~D~v~~~~ 174 (258)
T 2pwy_A 162 --------LEEAAYDGVALDL 174 (258)
T ss_dssp --------CCTTCEEEEEEES
T ss_pred --------CCCCCcCEEEECC
Confidence 3456899999975
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=98.60 E-value=4.8e-08 Score=76.60 Aligned_cols=68 Identities=15% Similarity=0.144 Sum_probs=53.1
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-----CCeeEEecccc
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-----EGVIQVQGDIT 103 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-----~~v~~i~gDi~ 103 (179)
.++.+|||||||+|.++..++++.+ ...|+|+|+++.. .+ ++++++++|+.
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~-------------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 94 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKS-------------FEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLV 94 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTT-------------CCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSS
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCC-------------CCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccc
Confidence 4678999999999999999988754 4799999999831 11 17999999997
Q ss_pred chhhHHHHHhhcCCCCccEEeeCCC
Q 030299 104 NARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 104 ~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
..+ ...++||+|++...
T Consensus 95 ~~~--------~~~~~fD~V~~~~~ 111 (219)
T 3jwg_A 95 YRD--------KRFSGYDAATVIEV 111 (219)
T ss_dssp SCC--------GGGTTCSEEEEESC
T ss_pred ccc--------cccCCCCEEEEHHH
Confidence 654 23468999998653
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=98.60 E-value=3.9e-08 Score=76.67 Aligned_cols=71 Identities=11% Similarity=-0.049 Sum_probs=55.2
Q ss_pred HHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----CCCCeeEEeccccchhhH
Q 030299 34 EEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 34 ~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----~~~~v~~i~gDi~~~~~~ 108 (179)
+....+.++.+|||||||+|.++..++++ + ..|+|+|+++.. ...++.++.+|+.+.+
T Consensus 36 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~--------------~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~-- 98 (211)
T 3e23_A 36 KFLGELPAGAKILELGCGAGYQAEAMLAA-G--------------FDVDATDGSPELAAEASRRLGRPVRTMLFHQLD-- 98 (211)
T ss_dssp HHHTTSCTTCEEEESSCTTSHHHHHHHHT-T--------------CEEEEEESCHHHHHHHHHHHTSCCEECCGGGCC--
T ss_pred HHHHhcCCCCcEEEECCCCCHHHHHHHHc-C--------------CeEEEECCCHHHHHHHHHhcCCceEEeeeccCC--
Confidence 33445678999999999999999999886 2 689999999831 1126778899988754
Q ss_pred HHHHhhcCCCCccEEeeCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~ 128 (179)
.++.||+|++...
T Consensus 99 -------~~~~fD~v~~~~~ 111 (211)
T 3e23_A 99 -------AIDAYDAVWAHAC 111 (211)
T ss_dssp -------CCSCEEEEEECSC
T ss_pred -------CCCcEEEEEecCc
Confidence 3568999999764
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=98.59 E-value=1.6e-07 Score=71.23 Aligned_cols=65 Identities=14% Similarity=0.199 Sum_probs=53.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCC--eeEEeccccchh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEG--VIQVQGDITNAR 106 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~--v~~i~gDi~~~~ 106 (179)
+++.+|||+|||+|.++..++++ + ..|+|+|+++.. ..++ ++++++|+.+..
T Consensus 51 ~~~~~vLdiG~G~G~~~~~~~~~-~--------------~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~ 115 (194)
T 1dus_A 51 DKDDDILDLGCGYGVIGIALADE-V--------------KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENV 115 (194)
T ss_dssp CTTCEEEEETCTTSHHHHHHGGG-S--------------SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTC
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc-C--------------CeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhccc
Confidence 57889999999999999999887 3 689999999831 2455 999999998742
Q ss_pred hHHHHHhhcCCCCccEEeeCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
.+.+||+|+++..
T Consensus 116 ---------~~~~~D~v~~~~~ 128 (194)
T 1dus_A 116 ---------KDRKYNKIITNPP 128 (194)
T ss_dssp ---------TTSCEEEEEECCC
T ss_pred ---------ccCCceEEEECCC
Confidence 3468999999864
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.6e-07 Score=75.99 Aligned_cols=71 Identities=15% Similarity=0.198 Sum_probs=55.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCC-CCeeEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------API-EGVIQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~-~~v~~i~gDi~~~~~ 107 (179)
.++.+|||||||+|.++..+++.+++ .++|+++|+++. ... .+++++.+|+.+...
T Consensus 62 ~~~~~VLdiG~G~G~~~~~la~~~~~------------~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~ 129 (248)
T 3tfw_A 62 TQAKRILEIGTLGGYSTIWMARELPA------------DGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLE 129 (248)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTSCT------------TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHH
T ss_pred cCCCEEEEecCCchHHHHHHHHhCCC------------CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHH
Confidence 57889999999999999999998753 589999999983 123 379999999876321
Q ss_pred HHHHHhhcC-CCCccEEeeCCC
Q 030299 108 AEVVIRHFD-GCKADLVVCDGA 128 (179)
Q Consensus 108 ~~~l~~~~~-~~~~D~VlsD~~ 128 (179)
.+. .++||+|++|+.
T Consensus 130 ------~~~~~~~fD~V~~d~~ 145 (248)
T 3tfw_A 130 ------SLGECPAFDLIFIDAD 145 (248)
T ss_dssp ------TCCSCCCCSEEEECSC
T ss_pred ------hcCCCCCeEEEEECCc
Confidence 122 348999999874
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.59 E-value=7.9e-08 Score=75.23 Aligned_cols=68 Identities=21% Similarity=0.245 Sum_probs=54.1
Q ss_pred CCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhh
Q 030299 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNART 107 (179)
Q Consensus 38 ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~ 107 (179)
.++++.+|||||||+|.++..++++. ..|+|+|+++.. ...+++++++|+.+.+
T Consensus 35 ~~~~~~~vLDlG~G~G~~~~~l~~~~---------------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~- 98 (227)
T 1ve3_A 35 YMKKRGKVLDLACGVGGFSFLLEDYG---------------FEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLS- 98 (227)
T ss_dssp SCCSCCEEEEETCTTSHHHHHHHHTT---------------CEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCC-
T ss_pred hcCCCCeEEEEeccCCHHHHHHHHcC---------------CEEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCC-
Confidence 34678899999999999999988763 489999999831 1267999999998854
Q ss_pred HHHHHhhcCCCCccEEeeCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~ 128 (179)
+++++||+|++...
T Consensus 99 -------~~~~~~D~v~~~~~ 112 (227)
T 1ve3_A 99 -------FEDKTFDYVIFIDS 112 (227)
T ss_dssp -------SCTTCEEEEEEESC
T ss_pred -------CCCCcEEEEEEcCc
Confidence 34568999999754
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=98.58 E-value=9.5e-08 Score=74.28 Aligned_cols=66 Identities=15% Similarity=0.106 Sum_probs=53.0
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART 107 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~ 107 (179)
++++.+|||+|||+|.++..+++. + ...|+|+|+++.. ...+++++++|+.+.
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~~-~-------------~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-- 121 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHKL-G-------------AKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLAD-- 121 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHHT-T-------------CSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTT--
T ss_pred ccCCCEEEEECCCCCHHHHHHHHC-C-------------CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEecccccc--
Confidence 478899999999999999998864 3 3699999999831 234589999999774
Q ss_pred HHHHHhhcCCCCccEEeeCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~ 128 (179)
..++||+|+++..
T Consensus 122 --------~~~~fD~i~~~~~ 134 (205)
T 3grz_A 122 --------VDGKFDLIVANIL 134 (205)
T ss_dssp --------CCSCEEEEEEESC
T ss_pred --------CCCCceEEEECCc
Confidence 2368999999864
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=98.58 E-value=8.8e-08 Score=77.19 Aligned_cols=70 Identities=11% Similarity=0.116 Sum_probs=54.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-------------------CCCCeeEEec
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------------------PIEGVIQVQG 100 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-------------------~~~~v~~i~g 100 (179)
+++.+|||||||+|.++..++.+.+ ...|+|+|+++.. .++|+.++++
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~-------------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~ 114 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFP-------------EDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRG 114 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHST-------------TSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEEC
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC-------------CCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEec
Confidence 4778999999999999999999864 4799999999721 3468999999
Q ss_pred cccchhhHHHHHhhcCCCCccEEeeCC
Q 030299 101 DITNARTAEVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 101 Di~~~~~~~~l~~~~~~~~~D~VlsD~ 127 (179)
|+.+... ..+....+|.|+...
T Consensus 115 D~~~~l~-----~~~~~~~~d~v~~~~ 136 (246)
T 2vdv_E 115 NAMKFLP-----NFFEKGQLSKMFFCF 136 (246)
T ss_dssp CTTSCGG-----GTSCTTCEEEEEEES
T ss_pred cHHHHHH-----HhccccccCEEEEEC
Confidence 9987311 124556788887654
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.57 E-value=8.9e-08 Score=77.88 Aligned_cols=70 Identities=16% Similarity=0.116 Sum_probs=56.7
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------------C--CCCeeEEeccccc
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------P--IEGVIQVQGDITN 104 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------------~--~~~v~~i~gDi~~ 104 (179)
++++.+|||+|||+|.++..+++.+++ .+.|+++|+++.. . ..++.++++|+.+
T Consensus 97 ~~~~~~vLdiG~G~G~~~~~l~~~~~~------------~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~ 164 (280)
T 1i9g_A 97 IFPGARVLEAGAGSGALTLSLLRAVGP------------AGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLAD 164 (280)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCT------------TSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGG
T ss_pred CCCCCEEEEEcccccHHHHHHHHHhCC------------CCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHh
Confidence 478899999999999999999998753 5799999999831 1 3579999999987
Q ss_pred hhhHHHHHhhcCCCCccEEeeCCC
Q 030299 105 ARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 105 ~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
.. +++..||+|++|+.
T Consensus 165 ~~--------~~~~~~D~v~~~~~ 180 (280)
T 1i9g_A 165 SE--------LPDGSVDRAVLDML 180 (280)
T ss_dssp CC--------CCTTCEEEEEEESS
T ss_pred cC--------CCCCceeEEEECCc
Confidence 53 34568999999764
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=98.57 E-value=6e-08 Score=78.46 Aligned_cols=68 Identities=15% Similarity=0.173 Sum_probs=55.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CCCCeeEEeccccchhhHHHHHh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
.++.+|||+|||+|.++..+++..+ ...|+|+|+++.. ..+++.++++|+.+.+
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~-------------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~------- 143 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALP-------------EITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLP------- 143 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCT-------------TSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCS-------
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCC-------------CCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCC-------
Confidence 5788999999999999999998864 4699999999831 2467889999998754
Q ss_pred hcCCCCccEEeeCCC
Q 030299 114 HFDGCKADLVVCDGA 128 (179)
Q Consensus 114 ~~~~~~~D~VlsD~~ 128 (179)
+.+++||+|++...
T Consensus 144 -~~~~~fD~v~~~~~ 157 (269)
T 1p91_A 144 -FSDTSMDAIIRIYA 157 (269)
T ss_dssp -BCTTCEEEEEEESC
T ss_pred -CCCCceeEEEEeCC
Confidence 34568999998654
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.56 E-value=6.6e-08 Score=77.35 Aligned_cols=70 Identities=16% Similarity=0.117 Sum_probs=54.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCC-CCeeEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------API-EGVIQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~-~~v~~i~gDi~~~~~ 107 (179)
.++.+|||||||+|.++..+++..+ .++|+++|+++. ..+ ++++++.+|+.+...
T Consensus 70 ~~~~~vLDiG~G~G~~~~~la~~~~-------------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 136 (232)
T 3ntv_A 70 NNVKNILEIGTAIGYSSMQFASISD-------------DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFE 136 (232)
T ss_dssp HTCCEEEEECCSSSHHHHHHHTTCT-------------TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHH
T ss_pred cCCCEEEEEeCchhHHHHHHHHhCC-------------CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHH
Confidence 4678999999999999999998543 589999999983 123 379999999987421
Q ss_pred HHHHHhhcCCCCccEEeeCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~ 128 (179)
. .+ +.+||+|++|+.
T Consensus 137 ~-----~~-~~~fD~V~~~~~ 151 (232)
T 3ntv_A 137 N-----VN-DKVYDMIFIDAA 151 (232)
T ss_dssp H-----HT-TSCEEEEEEETT
T ss_pred h-----hc-cCCccEEEEcCc
Confidence 0 12 468999999875
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=6.8e-08 Score=78.78 Aligned_cols=70 Identities=17% Similarity=0.051 Sum_probs=54.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
.++.+|||||||+|..+..++...+ ..+|+|+|+++.. .+.+++++++|+.+....
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~-------------~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~ 145 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRP-------------ELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLARE 145 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCT-------------TCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTS
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcc
Confidence 4678999999999999999998865 5899999999831 356799999999875310
Q ss_pred HHHHhhcCCCCccEEeeCC
Q 030299 109 EVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~ 127 (179)
.....+||+|+|..
T Consensus 146 -----~~~~~~fD~I~s~a 159 (249)
T 3g89_A 146 -----AGHREAYARAVARA 159 (249)
T ss_dssp -----TTTTTCEEEEEEES
T ss_pred -----cccCCCceEEEECC
Confidence 01136899999965
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=98.56 E-value=2.6e-07 Score=73.57 Aligned_cols=67 Identities=21% Similarity=0.190 Sum_probs=53.9
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CCCCCeeEEeccccchhhHHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~~~~~v~~i~gDi~~~~~~~~ 110 (179)
.++.+|||||||+|.++..++++.. ..|+|+|+++. ....++.++++|+.+.+
T Consensus 92 ~~~~~vLDiG~G~G~~~~~l~~~~~--------------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~---- 153 (254)
T 1xtp_A 92 HGTSRALDCGAGIGRITKNLLTKLY--------------ATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETAT---- 153 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHC--------------SEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCC----
T ss_pred cCCCEEEEECCCcCHHHHHHHHhhc--------------CEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCC----
Confidence 5688999999999999999998852 58999999983 11257899999998854
Q ss_pred HHhhcCCCCccEEeeCCC
Q 030299 111 VIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 111 l~~~~~~~~~D~VlsD~~ 128 (179)
++++.||+|++...
T Consensus 154 ----~~~~~fD~v~~~~~ 167 (254)
T 1xtp_A 154 ----LPPNTYDLIVIQWT 167 (254)
T ss_dssp ----CCSSCEEEEEEESC
T ss_pred ----CCCCCeEEEEEcch
Confidence 34568999998653
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.4e-07 Score=78.07 Aligned_cols=35 Identities=20% Similarity=0.260 Sum_probs=32.0
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~ 88 (179)
++.+|||||||+|.++..++.+.+ ...|+|+|+++
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~-------------~~~v~gvDis~ 80 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWG-------------PSRMVGLDIDS 80 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTC-------------CSEEEEEESCH
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcC-------------CCEEEEECCCH
Confidence 578999999999999999999976 47999999997
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.5e-07 Score=76.78 Aligned_cols=68 Identities=12% Similarity=0.153 Sum_probs=54.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~~ 107 (179)
.++.+|||||||+|.++..++++ + ..|+|+|+++.. .. ++++++++|+.+.+.
T Consensus 67 ~~~~~vLDiGcG~G~~~~~l~~~-~--------------~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 131 (285)
T 4htf_A 67 PQKLRVLDAGGGEGQTAIKMAER-G--------------HQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVAS 131 (285)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHT-T--------------CEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGG
T ss_pred CCCCEEEEeCCcchHHHHHHHHC-C--------------CEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhh
Confidence 34779999999999999999887 3 689999999831 12 578999999988652
Q ss_pred HHHHHhhcCCCCccEEeeCCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
+.+++||+|++....
T Consensus 132 -------~~~~~fD~v~~~~~l 146 (285)
T 4htf_A 132 -------HLETPVDLILFHAVL 146 (285)
T ss_dssp -------GCSSCEEEEEEESCG
T ss_pred -------hcCCCceEEEECchh
Confidence 345789999997643
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.55 E-value=1.6e-07 Score=75.47 Aligned_cols=71 Identities=13% Similarity=0.125 Sum_probs=53.8
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCC-CeeEEeccccch-hh
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNA-RT 107 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~-~v~~i~gDi~~~-~~ 107 (179)
++.+|||||||+|.++..++.+.+ ...|+|+|+++.. .+. +++++++|+.+. ..
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~-------------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 131 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLN-------------GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMD 131 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHH-------------CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTT
T ss_pred CCCEEEEeCCChhHHHHHHHHhCC-------------CCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhh
Confidence 578999999999999999998875 4799999999831 233 489999998762 10
Q ss_pred HHHHHhhcC---CCCccEEeeCCCCC
Q 030299 108 AEVVIRHFD---GCKADLVVCDGAPD 130 (179)
Q Consensus 108 ~~~l~~~~~---~~~~D~VlsD~~~~ 130 (179)
.++ +.+||+|+++.+..
T Consensus 132 ------~~~~~~~~~fD~i~~npp~~ 151 (254)
T 2h00_A 132 ------ALKEESEIIYDFCMCNPPFF 151 (254)
T ss_dssp ------TSTTCCSCCBSEEEECCCCC
T ss_pred ------hhhcccCCcccEEEECCCCc
Confidence 122 25799999996543
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.55 E-value=6.2e-07 Score=77.19 Aligned_cols=68 Identities=16% Similarity=0.187 Sum_probs=54.3
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CC-CCeeEEeccccchhh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PI-EGVIQVQGDITNART 107 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~-~~v~~i~gDi~~~~~ 107 (179)
+.++.+|||||||+|.++..++++ + ..+|+|+|+++|. .+ .+++++++|+.+.+
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~-g-------------~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~- 125 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQA-G-------------ARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDIS- 125 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHT-T-------------CSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCC-
T ss_pred cCCCCEEEEeccCcCHHHHHHHhc-C-------------CCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcC-
Confidence 367889999999999999999887 3 2599999999752 12 34899999998865
Q ss_pred HHHHHhhcCCCCccEEeeCCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
++ ++||+|+++...
T Consensus 126 -------~~-~~~D~Iv~~~~~ 139 (376)
T 3r0q_C 126 -------LP-EKVDVIISEWMG 139 (376)
T ss_dssp -------CS-SCEEEEEECCCB
T ss_pred -------cC-CcceEEEEcChh
Confidence 33 689999997643
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=98.55 E-value=3.1e-07 Score=74.95 Aligned_cols=64 Identities=20% Similarity=0.107 Sum_probs=52.9
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~~ 109 (179)
++.+|||+|||+|.++..++++ + ..|+|+|+++.. .. +++++++|+.+..
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~-g--------------~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~--- 180 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLL-G--------------YDVTSWDHNENSIAFLNETKEKENL-NISTALYDINAAN--- 180 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHT-T--------------CEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCGGGCC---
T ss_pred CCCcEEEECCCCCHHHHHHHHC-C--------------CeEEEEECCHHHHHHHHHHHHHcCC-ceEEEEecccccc---
Confidence 7889999999999999999887 3 589999999831 12 7899999998864
Q ss_pred HHHhhcCCCCccEEeeCCCC
Q 030299 110 VVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~~ 129 (179)
+ +++||+|++....
T Consensus 181 -----~-~~~fD~i~~~~~~ 194 (286)
T 3m70_A 181 -----I-QENYDFIVSTVVF 194 (286)
T ss_dssp -----C-CSCEEEEEECSSG
T ss_pred -----c-cCCccEEEEccch
Confidence 2 4689999998753
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=1.9e-07 Score=77.48 Aligned_cols=65 Identities=9% Similarity=-0.001 Sum_probs=52.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~~ 107 (179)
.++.+|||+|||+|.++..++++.+ ..|+|+|+++.. .+ +++.++++|+.+.
T Consensus 89 ~~~~~vLDiGcG~G~~~~~la~~~~--------------~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-- 152 (318)
T 2fk8_A 89 KPGMTLLDIGCGWGTTMRRAVERFD--------------VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF-- 152 (318)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHC--------------CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC--
T ss_pred CCcCEEEEEcccchHHHHHHHHHCC--------------CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHC--
Confidence 6789999999999999999998864 699999999831 12 4689999998763
Q ss_pred HHHHHhhcCCCCccEEeeCCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
+ ++||+|++....
T Consensus 153 --------~-~~fD~v~~~~~l 165 (318)
T 2fk8_A 153 --------A-EPVDRIVSIEAF 165 (318)
T ss_dssp --------C-CCCSEEEEESCG
T ss_pred --------C-CCcCEEEEeChH
Confidence 2 579999987653
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=2.8e-07 Score=77.01 Aligned_cols=70 Identities=9% Similarity=0.006 Sum_probs=52.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-------------C--CCCeeEEeccccc
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------------P--IEGVIQVQGDITN 104 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-------------~--~~~v~~i~gDi~~ 104 (179)
.++.+|||||||+|+.+..+++..+ ..+|+++|+++.. . .++++++.+|+.+
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~-------------~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~ 155 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDS-------------VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAE 155 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTT-------------CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHH
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCC-------------CCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHH
Confidence 4568999999999999999987643 4799999999831 0 3579999999876
Q ss_pred hhhHHHHHhhcCCCCccEEeeCCCC
Q 030299 105 ARTAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 105 ~~~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
... ..+++||+|++|...
T Consensus 156 ~l~-------~~~~~fD~Ii~d~~~ 173 (296)
T 1inl_A 156 YVR-------KFKNEFDVIIIDSTD 173 (296)
T ss_dssp HGG-------GCSSCEEEEEEEC--
T ss_pred HHh-------hCCCCceEEEEcCCC
Confidence 421 124579999999753
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.54 E-value=1.5e-07 Score=74.00 Aligned_cols=75 Identities=15% Similarity=0.120 Sum_probs=55.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCC-CeeEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIE-GVIQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~~-~v~~i~gDi~~~~~ 107 (179)
.++.+|||||||+|.++.++++.++. .++|+++|+++. .... +++++++|+.+...
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~------------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 130 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPK------------DGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLA 130 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCT------------TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHH
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCC------------CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHH
Confidence 46789999999999999999998753 589999999983 1233 59999999876421
Q ss_pred HHHHHhhcCCCCccEEeeCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~ 128 (179)
.+.......+||+|++|+.
T Consensus 131 --~~~~~~~~~~fD~v~~~~~ 149 (225)
T 3tr6_A 131 --ELIHAGQAWQYDLIYIDAD 149 (225)
T ss_dssp --HHHTTTCTTCEEEEEECSC
T ss_pred --HhhhccCCCCccEEEECCC
Confidence 1111111168999999874
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.54 E-value=1.2e-07 Score=72.07 Aligned_cols=71 Identities=17% Similarity=0.059 Sum_probs=53.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~~ 107 (179)
.++.+|||+|||+|.++..++.+ + ..+|+|+|+++.. .+ ++++++++|+.+...
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~~-~-------------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 108 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVSR-G-------------MDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALE 108 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHT-T-------------CSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHH
T ss_pred cCCCCEEEeCCccCHHHHHHHHc-C-------------CCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHH
Confidence 57889999999999999998874 3 3699999999831 12 468999999987431
Q ss_pred HHHHHhhcCCCCccEEeeCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~ 128 (179)
.+. ....+||+|++|.+
T Consensus 109 --~~~--~~~~~fD~i~~~~~ 125 (187)
T 2fhp_A 109 --QFY--EEKLQFDLVLLDPP 125 (187)
T ss_dssp --HHH--HTTCCEEEEEECCC
T ss_pred --HHH--hcCCCCCEEEECCC
Confidence 111 12468999999865
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.54 E-value=5.9e-07 Score=76.26 Aligned_cols=71 Identities=14% Similarity=0.048 Sum_probs=57.1
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCeeEEeccccchhh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNART 107 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~~~v~~i~gDi~~~~~ 107 (179)
.+++.+|||+|||+|.++..++...++ ...|+|+|+++. ..+.+++++++|+++.+.
T Consensus 201 ~~~~~~vLD~gcGsG~~~ie~a~~~~~------------~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~ 268 (354)
T 3tma_A 201 ARPGMRVLDPFTGSGTIALEAASTLGP------------TSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPR 268 (354)
T ss_dssp CCTTCCEEESSCTTSHHHHHHHHHHCT------------TSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGG
T ss_pred CCCCCEEEeCCCCcCHHHHHHHHhhCC------------CceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcc
Confidence 367889999999999999999998732 578999999983 123478999999998652
Q ss_pred HHHHHhhcCCCCccEEeeCCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
+...||+|++|.+.
T Consensus 269 --------~~~~~D~Ii~npPy 282 (354)
T 3tma_A 269 --------FFPEVDRILANPPH 282 (354)
T ss_dssp --------TCCCCSEEEECCCS
T ss_pred --------ccCCCCEEEECCCC
Confidence 33568999999764
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.3e-07 Score=77.02 Aligned_cols=65 Identities=14% Similarity=0.113 Sum_probs=53.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC------CCCCCeeEEeccccchhhHHHHHh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------APIEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~------~~~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
.++.+|||||||+|.++..+++ + ...|+|+|+++. +..+++.++++|+.+.+
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~--~-------------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~------- 113 (279)
T 3ccf_A 56 QPGEFILDLGCGTGQLTEKIAQ--S-------------GAEVLGTDNAATMIEKARQNYPHLHFDVADARNFR------- 113 (279)
T ss_dssp CTTCEEEEETCTTSHHHHHHHH--T-------------TCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCC-------
T ss_pred CCCCEEEEecCCCCHHHHHHHh--C-------------CCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCC-------
Confidence 6788999999999999999988 2 479999999983 12468999999998854
Q ss_pred hcCCCCccEEeeCCC
Q 030299 114 HFDGCKADLVVCDGA 128 (179)
Q Consensus 114 ~~~~~~~D~VlsD~~ 128 (179)
+ +.+||+|++...
T Consensus 114 -~-~~~fD~v~~~~~ 126 (279)
T 3ccf_A 114 -V-DKPLDAVFSNAM 126 (279)
T ss_dssp -C-SSCEEEEEEESC
T ss_pred -c-CCCcCEEEEcch
Confidence 2 358999999764
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=8.8e-08 Score=77.23 Aligned_cols=65 Identities=14% Similarity=0.225 Sum_probs=53.0
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC------CCCCCeeEEeccccchhhHHHHH
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------APIEGVIQVQGDITNARTAEVVI 112 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~------~~~~~v~~i~gDi~~~~~~~~l~ 112 (179)
+.++.+|||||||+|.++..++++ ...|+|+|+++. +..+++.++++|+.+.+
T Consensus 48 ~~~~~~vLDiGcG~G~~~~~l~~~---------------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~------ 106 (263)
T 3pfg_A 48 SPKAASLLDVACGTGMHLRHLADS---------------FGTVEGLELSADMLAIARRRNPDAVLHHGDMRDFS------ 106 (263)
T ss_dssp CTTCCEEEEETCTTSHHHHHHTTT---------------SSEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCC------
T ss_pred CCCCCcEEEeCCcCCHHHHHHHHc---------------CCeEEEEECCHHHHHHHHhhCCCCEEEECChHHCC------
Confidence 356789999999999999999876 258999999983 12458999999999864
Q ss_pred hhcCCCCccEEeeCC
Q 030299 113 RHFDGCKADLVVCDG 127 (179)
Q Consensus 113 ~~~~~~~~D~VlsD~ 127 (179)
+ +.+||+|++..
T Consensus 107 --~-~~~fD~v~~~~ 118 (263)
T 3pfg_A 107 --L-GRRFSAVTCMF 118 (263)
T ss_dssp --C-SCCEEEEEECT
T ss_pred --c-cCCcCEEEEcC
Confidence 2 46899999975
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.2e-07 Score=74.75 Aligned_cols=79 Identities=10% Similarity=0.132 Sum_probs=56.9
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------C-----CCCeeEEeccc
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-----IEGVIQVQGDI 102 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~-----~~~v~~i~gDi 102 (179)
++++.+|||+|||+|.++..+++..+. ..++.+.|+++|+++.. . ..+++++++|+
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~--------~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~ 149 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNV--------LENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNI 149 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTT--------TTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCG
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcc--------cCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECCh
Confidence 578899999999999999999998640 00014699999999831 1 35799999999
Q ss_pred cchhhHHHHHhhcCCCCccEEeeCCCC
Q 030299 103 TNARTAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 103 ~~~~~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
.+.... .. ....+||+|+++...
T Consensus 150 ~~~~~~-~~---~~~~~fD~I~~~~~~ 172 (227)
T 2pbf_A 150 YQVNEE-EK---KELGLFDAIHVGASA 172 (227)
T ss_dssp GGCCHH-HH---HHHCCEEEEEECSBB
T ss_pred Hhcccc-cC---ccCCCcCEEEECCch
Confidence 874210 00 013579999998764
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=7.7e-08 Score=77.46 Aligned_cols=75 Identities=12% Similarity=0.016 Sum_probs=56.9
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC----------CCCCCeeEEeccccchhhHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM----------APIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~----------~~~~~v~~i~gDi~~~~~~~ 109 (179)
.+|.+|||||||+|..+.++++..+ ..|++||++|. ....++.++++|..+..
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~--------------~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~--- 121 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPI--------------DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVA--- 121 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCE--------------EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHG---
T ss_pred cCCCeEEEECCCccHHHHHHHHhCC--------------cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhc---
Confidence 6789999999999999999987643 57999999983 12346778888887643
Q ss_pred HHHhhcCCCCccEEeeCCCCCCCCC
Q 030299 110 VVIRHFDGCKADLVVCDGAPDVTGL 134 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~~~~~g~ 134 (179)
..+++.+||.|+.|..+.....
T Consensus 122 ---~~~~~~~FD~i~~D~~~~~~~~ 143 (236)
T 3orh_A 122 ---PTLPDGHFDGILYDTYPLSEET 143 (236)
T ss_dssp ---GGSCTTCEEEEEECCCCCBGGG
T ss_pred ---ccccccCCceEEEeeeecccch
Confidence 2356778999999976544433
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=1.3e-07 Score=75.90 Aligned_cols=54 Identities=15% Similarity=0.073 Sum_probs=44.9
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC--C-------C------CCCCeeEEeccccc
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP--M-------A------PIEGVIQVQGDITN 104 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~--~-------~------~~~~v~~i~gDi~~ 104 (179)
+++.+|||||||+|.++..++++.+ ...|+|+|+++ | . ..+++.++++|+.+
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~-------------~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~ 89 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQ-------------NTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAES 89 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCT-------------TEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTB
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCC-------------CCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHH
Confidence 6888999999999999999987644 57899999994 3 1 24689999999988
Q ss_pred hh
Q 030299 105 AR 106 (179)
Q Consensus 105 ~~ 106 (179)
.+
T Consensus 90 l~ 91 (225)
T 3p2e_A 90 LP 91 (225)
T ss_dssp CC
T ss_pred hh
Confidence 64
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.51 E-value=2.1e-07 Score=76.06 Aligned_cols=69 Identities=22% Similarity=0.238 Sum_probs=55.5
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNAR 106 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~ 106 (179)
+.++.+|||+|||+|.++..+++++++ .+.|+++|+++.. .+ +++.++.+|+.+.
T Consensus 110 ~~~~~~VLDiG~G~G~~~~~la~~~~~------------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~- 176 (277)
T 1o54_A 110 VKEGDRIIDTGVGSGAMCAVLARAVGS------------SGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG- 176 (277)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHTTT------------TCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCC------------CcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-
Confidence 367899999999999999999998643 5799999999831 12 4788999999874
Q ss_pred hHHHHHhhcCCCCccEEeeCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
+++..||+|++|..
T Consensus 177 --------~~~~~~D~V~~~~~ 190 (277)
T 1o54_A 177 --------FDEKDVDALFLDVP 190 (277)
T ss_dssp --------CSCCSEEEEEECCS
T ss_pred --------ccCCccCEEEECCc
Confidence 24468999999863
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.9e-07 Score=72.99 Aligned_cols=71 Identities=20% Similarity=0.151 Sum_probs=55.6
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART 107 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~ 107 (179)
+.++.+|||+|||+|.++..+++..++ ...|+++|+++.. ..+++.++++|+.....
T Consensus 75 ~~~~~~vLdiG~G~G~~~~~l~~~~~~------------~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~ 142 (215)
T 2yxe_A 75 LKPGMKVLEIGTGCGYHAAVTAEIVGE------------DGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYE 142 (215)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCT------------TSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCG
T ss_pred CCCCCEEEEECCCccHHHHHHHHHhCC------------CCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC
Confidence 367899999999999999999998742 4799999999831 24679999999865321
Q ss_pred HHHHHhhcCCCCccEEeeCCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
...+||+|+++...
T Consensus 143 --------~~~~fD~v~~~~~~ 156 (215)
T 2yxe_A 143 --------PLAPYDRIYTTAAG 156 (215)
T ss_dssp --------GGCCEEEEEESSBB
T ss_pred --------CCCCeeEEEECCch
Confidence 13579999998754
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=1.1e-07 Score=79.54 Aligned_cols=71 Identities=18% Similarity=0.135 Sum_probs=56.9
Q ss_pred CCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCC-CeeEEeccccch
Q 030299 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNA 105 (179)
Q Consensus 38 ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~-~v~~i~gDi~~~ 105 (179)
++++|.+|||+|||+|.++..++.+. ..+|+|+|++|.. .+. .++++++|.++.
T Consensus 122 ~~~~g~~VlD~~aG~G~~~i~~a~~g--------------~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~ 187 (278)
T 3k6r_A 122 VAKPDELVVDMFAGIGHLSLPIAVYG--------------KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDF 187 (278)
T ss_dssp HCCTTCEEEETTCTTTTTTHHHHHHT--------------CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTC
T ss_pred hcCCCCEEEEecCcCcHHHHHHHHhc--------------CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHh
Confidence 46899999999999999999998863 3689999999941 233 488999999875
Q ss_pred hhHHHHHhhcCCCCccEEeeCCCCCC
Q 030299 106 RTAEVVIRHFDGCKADLVVCDGAPDV 131 (179)
Q Consensus 106 ~~~~~l~~~~~~~~~D~VlsD~~~~~ 131 (179)
. ....||.|+.+.++.+
T Consensus 188 ~---------~~~~~D~Vi~~~p~~~ 204 (278)
T 3k6r_A 188 P---------GENIADRILMGYVVRT 204 (278)
T ss_dssp C---------CCSCEEEEEECCCSSG
T ss_pred c---------cccCCCEEEECCCCcH
Confidence 3 3468999999877643
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=98.50 E-value=2.5e-07 Score=78.16 Aligned_cols=67 Identities=13% Similarity=0.251 Sum_probs=53.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CC-CCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PI-EGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~-~~v~~i~gDi~~~~~~ 108 (179)
.++.+|||||||+|.++..++++ + ..+|+|+|++++. .. .+++++++|+.+.+
T Consensus 37 ~~~~~VLDiGcGtG~ls~~la~~-g-------------~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-- 100 (328)
T 1g6q_1 37 FKDKIVLDVGCGTGILSMFAAKH-G-------------AKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVH-- 100 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT-C-------------CSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSC--
T ss_pred cCCCEEEEecCccHHHHHHHHHC-C-------------CCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhcc--
Confidence 56789999999999999999886 3 3689999999752 12 35899999998864
Q ss_pred HHHHhhcCCCCccEEeeCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~ 128 (179)
++.++||+|+++..
T Consensus 101 ------~~~~~~D~Ivs~~~ 114 (328)
T 1g6q_1 101 ------LPFPKVDIIISEWM 114 (328)
T ss_dssp ------CSSSCEEEEEECCC
T ss_pred ------CCCCcccEEEEeCc
Confidence 34468999999854
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.50 E-value=2.9e-07 Score=80.00 Aligned_cols=65 Identities=17% Similarity=0.201 Sum_probs=52.7
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CC-CCeeEEeccccchhhHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PI-EGVIQVQGDITNARTAE 109 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~-~~v~~i~gDi~~~~~~~ 109 (179)
+|.+|||||||+|..|..+++. + ..+|+|||.++|. .+ ..|+++++|+++.+
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~a-G-------------A~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~--- 145 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQA-G-------------ARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVE--- 145 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-T-------------CSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCC---
T ss_pred CCCEEEEeCCCccHHHHHHHHh-C-------------CCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeec---
Confidence 6889999999999999888775 3 3689999999873 12 35899999999875
Q ss_pred HHHhhcCCCCccEEeeCCC
Q 030299 110 VVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~ 128 (179)
++ ++||+|+|...
T Consensus 146 -----lp-e~~DvivsE~~ 158 (376)
T 4hc4_A 146 -----LP-EQVDAIVSEWM 158 (376)
T ss_dssp -----CS-SCEEEEECCCC
T ss_pred -----CC-ccccEEEeecc
Confidence 34 58999999754
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.9e-07 Score=80.77 Aligned_cols=69 Identities=19% Similarity=0.185 Sum_probs=54.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC---CCeeEEeccccch
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI---EGVIQVQGDITNA 105 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~---~~v~~i~gDi~~~ 105 (179)
.++.+|||||||+|.++..++++.+ ..+|+|+|+++.. .+ .+++++.+|+.+.
T Consensus 221 ~~~~~VLDlGcG~G~~s~~la~~~p-------------~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~ 287 (375)
T 4dcm_A 221 NLEGEIVDLGCGNGVIGLTLLDKNP-------------QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG 287 (375)
T ss_dssp SCCSEEEEETCTTCHHHHHHHHHCT-------------TCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTT
T ss_pred cCCCeEEEEeCcchHHHHHHHHHCC-------------CCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhcc
Confidence 3468999999999999999999864 5799999999841 11 2588899999874
Q ss_pred hhHHHHHhhcCCCCccEEeeCCCCC
Q 030299 106 RTAEVVIRHFDGCKADLVVCDGAPD 130 (179)
Q Consensus 106 ~~~~~l~~~~~~~~~D~VlsD~~~~ 130 (179)
+++++||+|++|.+..
T Consensus 288 ---------~~~~~fD~Ii~nppfh 303 (375)
T 4dcm_A 288 ---------VEPFRFNAVLCNPPFH 303 (375)
T ss_dssp ---------CCTTCEEEEEECCCC-
T ss_pred ---------CCCCCeeEEEECCCcc
Confidence 3456899999997653
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.49 E-value=4.2e-07 Score=72.51 Aligned_cols=64 Identities=25% Similarity=0.245 Sum_probs=51.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~ 109 (179)
+++.+|||||||+|.++..++++ + ..|+|+|+++.. ...++.++++|+.+.+
T Consensus 40 ~~~~~vLDlGcG~G~~~~~l~~~-~--------------~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~--- 101 (252)
T 1wzn_A 40 REVRRVLDLACGTGIPTLELAER-G--------------YEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIA--- 101 (252)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHT-T--------------CEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCC---
T ss_pred cCCCEEEEeCCCCCHHHHHHHHC-C--------------CeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcc---
Confidence 56789999999999999999886 2 689999999831 1236899999998854
Q ss_pred HHHhhcCCCCccEEeeCC
Q 030299 110 VVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~ 127 (179)
++ .+||+|++..
T Consensus 102 -----~~-~~fD~v~~~~ 113 (252)
T 1wzn_A 102 -----FK-NEFDAVTMFF 113 (252)
T ss_dssp -----CC-SCEEEEEECS
T ss_pred -----cC-CCccEEEEcC
Confidence 23 5799999854
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=6.4e-07 Score=76.97 Aligned_cols=72 Identities=15% Similarity=0.131 Sum_probs=56.9
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--CCCCeeEEeccccchhhHHHHHhhcCC
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--PIEGVIQVQGDITNARTAEVVIRHFDG 117 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--~~~~v~~i~gDi~~~~~~~~l~~~~~~ 117 (179)
.++.+|||+|||+|+++..++++.+. ...|+|+|+++.. ...++.++++|+.+.. ..
T Consensus 38 ~~~~~vLD~gcGtG~~~~~~~~~~~~------------~~~i~gvDi~~~~~~~a~~~~~~~~D~~~~~---------~~ 96 (421)
T 2ih2_A 38 PRGGRVLEPACAHGPFLRAFREAHGT------------AYRFVGVEIDPKALDLPPWAEGILADFLLWE---------PG 96 (421)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHHCS------------CSEEEEEESCTTTCCCCTTEEEEESCGGGCC---------CS
T ss_pred CCCCEEEECCCCChHHHHHHHHHhCC------------CCeEEEEECCHHHHHhCCCCcEEeCChhhcC---------cc
Confidence 35679999999999999999998732 4799999999953 2258899999998753 23
Q ss_pred CCccEEeeCCCCCCC
Q 030299 118 CKADLVVCDGAPDVT 132 (179)
Q Consensus 118 ~~~D~VlsD~~~~~~ 132 (179)
.+||+|+++.+....
T Consensus 97 ~~fD~Ii~NPPy~~~ 111 (421)
T 2ih2_A 97 EAFDLILGNPPYGIV 111 (421)
T ss_dssp SCEEEEEECCCCCCB
T ss_pred CCCCEEEECcCccCc
Confidence 589999999665433
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.7e-07 Score=75.74 Aligned_cols=70 Identities=10% Similarity=0.064 Sum_probs=54.2
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------------CCCCCeeEEecc
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------------APIEGVIQVQGD 101 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------------~~~~~v~~i~gD 101 (179)
.+++.+|||||||+|.++..++++.+ ...|+|+|+++. ....|+.++++|
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~p-------------~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d 110 (235)
T 3ckk_A 44 AQAQVEFADIGCGYGGLLVELSPLFP-------------DTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSN 110 (235)
T ss_dssp --CCEEEEEETCTTCHHHHHHGGGST-------------TSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECC
T ss_pred cCCCCeEEEEccCCcHHHHHHHHHCC-------------CCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECc
Confidence 35677999999999999999998865 579999999972 124689999999
Q ss_pred ccc-hhhHHHHHhhcCCCCccEEeeCC
Q 030299 102 ITN-ARTAEVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 102 i~~-~~~~~~l~~~~~~~~~D~VlsD~ 127 (179)
+.+ .+ ..++++.+|.|++..
T Consensus 111 ~~~~l~------~~~~~~~~D~v~~~~ 131 (235)
T 3ckk_A 111 AMKHLP------NFFYKGQLTKMFFLF 131 (235)
T ss_dssp TTTCHH------HHCCTTCEEEEEEES
T ss_pred HHHhhh------hhCCCcCeeEEEEeC
Confidence 987 32 124567899998754
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.6e-07 Score=72.29 Aligned_cols=67 Identities=16% Similarity=0.195 Sum_probs=53.4
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------C---C-----CCeeEEeccc
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P---I-----EGVIQVQGDI 102 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------~---~-----~~v~~i~gDi 102 (179)
++++.+|||+|||+|.++..++++ + ..|+|+|+++.. . . .++.++.+|+
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~-~--------------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 92 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASK-G--------------YSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENA 92 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT-T--------------CEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCT
T ss_pred CCCCCeEEEECCCCCHHHHHHHhC-C--------------CeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecc
Confidence 578999999999999999999887 3 689999999831 1 1 2478899999
Q ss_pred cchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 103 TNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 103 ~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
.+.+ +++++||+|++...
T Consensus 93 ~~~~--------~~~~~~D~v~~~~~ 110 (235)
T 3sm3_A 93 SSLS--------FHDSSFDFAVMQAF 110 (235)
T ss_dssp TSCC--------SCTTCEEEEEEESC
T ss_pred cccC--------CCCCceeEEEEcch
Confidence 8764 34678999999653
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=98.48 E-value=9e-08 Score=76.32 Aligned_cols=66 Identities=12% Similarity=-0.001 Sum_probs=51.9
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------C---CCCeeEEeccccchhhHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P---IEGVIQVQGDITNARTAE 109 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------~---~~~v~~i~gDi~~~~~~~ 109 (179)
++.+|||||||+|.++..++++. ...|+|+|+++.. . ..++.++++|+.+.+
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~--------------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~--- 141 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL--------------FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFT--- 141 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT--------------CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCC---
T ss_pred CCCEEEEECCCCCHHHHHHHHhc--------------CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcC---
Confidence 58899999999999999988764 2689999999831 1 235889999988754
Q ss_pred HHHhhcCCCCccEEeeCCC
Q 030299 110 VVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~ 128 (179)
+.++.||+|+++..
T Consensus 142 -----~~~~~fD~v~~~~~ 155 (241)
T 2ex4_A 142 -----PEPDSYDVIWIQWV 155 (241)
T ss_dssp -----CCSSCEEEEEEESC
T ss_pred -----CCCCCEEEEEEcch
Confidence 34458999999864
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.47 E-value=2.4e-07 Score=72.95 Aligned_cols=63 Identities=17% Similarity=0.286 Sum_probs=52.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC------CCCCCeeEEeccccchhhHHHHHh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------APIEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~------~~~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
.++.+|||+|||+|.++..++++. ..|+|+|+++. +..+++.++++|+.+.+
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~---------------~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~------- 96 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEF---------------GDTAGLELSEDMLTHARKRLPDATLHQGDMRDFR------- 96 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHH---------------SEEEEEESCHHHHHHHHHHCTTCEEEECCTTTCC-------
T ss_pred CCCCeEEEecccCCHHHHHHHHhC---------------CcEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcc-------
Confidence 678899999999999999999885 48999999983 12467999999998854
Q ss_pred hcCCCCccEEeeC
Q 030299 114 HFDGCKADLVVCD 126 (179)
Q Consensus 114 ~~~~~~~D~VlsD 126 (179)
+ ..+||+|++.
T Consensus 97 -~-~~~~D~v~~~ 107 (239)
T 3bxo_A 97 -L-GRKFSAVVSM 107 (239)
T ss_dssp -C-SSCEEEEEEC
T ss_pred -c-CCCCcEEEEc
Confidence 2 4689999963
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.47 E-value=2.6e-07 Score=72.90 Aligned_cols=68 Identities=13% Similarity=0.207 Sum_probs=53.4
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CCCCeeEEeccccchhhHH
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~~~~v~~i~gDi~~~~~~~ 109 (179)
+.++.+|||+|||+|.++..+++.. ..|+|+|+++.. ...++.++++|+.+...
T Consensus 68 ~~~~~~vLdiG~G~G~~~~~l~~~~---------------~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~-- 130 (231)
T 1vbf_A 68 LHKGQKVLEIGTGIGYYTALIAEIV---------------DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYE-- 130 (231)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHS---------------SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCG--
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHHc---------------CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccc--
Confidence 3678899999999999999999873 589999999831 11279999999987321
Q ss_pred HHHhhcCCCCccEEeeCCCC
Q 030299 110 VVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~~ 129 (179)
.+.+||+|+++...
T Consensus 131 ------~~~~fD~v~~~~~~ 144 (231)
T 1vbf_A 131 ------EEKPYDRVVVWATA 144 (231)
T ss_dssp ------GGCCEEEEEESSBB
T ss_pred ------cCCCccEEEECCcH
Confidence 23579999998754
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.46 E-value=2.6e-07 Score=69.01 Aligned_cols=71 Identities=14% Similarity=0.042 Sum_probs=53.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
+++.+|||+|||+|.++..++++. ..|+|+|+++.. .. +++++++|+.+....
T Consensus 40 ~~~~~vLD~GcG~G~~~~~l~~~~---------------~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~ 103 (171)
T 1ws6_A 40 PRRGRFLDPFAGSGAVGLEAASEG---------------WEAVLVEKDPEAVRLLKENVRRTGL-GARVVALPVEVFLPE 103 (171)
T ss_dssp TTCCEEEEETCSSCHHHHHHHHTT---------------CEEEEECCCHHHHHHHHHHHHHHTC-CCEEECSCHHHHHHH
T ss_pred cCCCeEEEeCCCcCHHHHHHHHCC---------------CeEEEEeCCHHHHHHHHHHHHHcCC-ceEEEeccHHHHHHh
Confidence 478899999999999999998873 349999999831 12 789999999874211
Q ss_pred HHHHhhcCCCCccEEeeCCCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGAPD 130 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~~ 130 (179)
+.. .+.+||+|+++.+..
T Consensus 104 --~~~--~~~~~D~i~~~~~~~ 121 (171)
T 1ws6_A 104 --AKA--QGERFTVAFMAPPYA 121 (171)
T ss_dssp --HHH--TTCCEEEEEECCCTT
T ss_pred --hhc--cCCceEEEEECCCCc
Confidence 111 134799999997643
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=98.46 E-value=5.8e-07 Score=76.45 Aligned_cols=66 Identities=17% Similarity=0.273 Sum_probs=53.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CC-CCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PI-EGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~-~~v~~i~gDi~~~~~~ 108 (179)
.++.+|||||||+|.++..++++ + ..+|+|+|++++. .. .+++++++|+.+.+
T Consensus 49 ~~~~~VLDiGcGtG~ls~~la~~-g-------------~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-- 112 (348)
T 2y1w_A 49 FKDKIVLDVGCGSGILSFFAAQA-G-------------ARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVS-- 112 (348)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHT-T-------------CSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCC--
T ss_pred CCcCEEEEcCCCccHHHHHHHhC-C-------------CCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCC--
Confidence 57889999999999999999885 3 3699999999852 12 57999999998864
Q ss_pred HHHHhhcCCCCccEEeeCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~ 128 (179)
++ ++||+|+++..
T Consensus 113 ------~~-~~~D~Ivs~~~ 125 (348)
T 2y1w_A 113 ------LP-EQVDIIISEPM 125 (348)
T ss_dssp ------CS-SCEEEEEECCC
T ss_pred ------CC-CceeEEEEeCc
Confidence 23 57999999865
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.2e-07 Score=79.27 Aligned_cols=65 Identities=14% Similarity=0.143 Sum_probs=49.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~~~v~~i~gDi~~~~~~ 108 (179)
.++.+|||+|||+|.+|..++++ ...|+|+|+++. ...++++++++|+.+.+
T Consensus 41 ~~~~~VLDiG~G~G~lt~~La~~---------------~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~-- 103 (299)
T 2h1r_A 41 KSSDIVLEIGCGTGNLTVKLLPL---------------AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTV-- 103 (299)
T ss_dssp CTTCEEEEECCTTSTTHHHHTTT---------------SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSC--
T ss_pred CCcCEEEEEcCcCcHHHHHHHhc---------------CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCC--
Confidence 67889999999999999999876 268999999983 12468999999998753
Q ss_pred HHHHhhcCCCCccEEeeCCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~ 129 (179)
...||+|++|.+.
T Consensus 104 --------~~~~D~Vv~n~py 116 (299)
T 2h1r_A 104 --------FPKFDVCTANIPY 116 (299)
T ss_dssp --------CCCCSEEEEECCG
T ss_pred --------cccCCEEEEcCCc
Confidence 2379999998764
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.7e-07 Score=72.50 Aligned_cols=68 Identities=16% Similarity=0.024 Sum_probs=51.2
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhH
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~ 108 (179)
+.++.+|||+|||+|.++..++... ...|+|+|+++.. ...++.++++|+.+.+
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~~--------------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-- 84 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVED--------------GYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLP-- 84 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHHT--------------TCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCC--
T ss_pred cCCCCEEEEECCCCCHHHHHHHHhC--------------CCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCC--
Confidence 4678899999999999855444443 3699999999831 1257889999998854
Q ss_pred HHHHhhcCCCCccEEeeCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~ 128 (179)
++++.||+|++...
T Consensus 85 ------~~~~~fD~v~~~~~ 98 (209)
T 2p8j_A 85 ------FKDESMSFVYSYGT 98 (209)
T ss_dssp ------SCTTCEEEEEECSC
T ss_pred ------CCCCceeEEEEcCh
Confidence 34568999998754
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.45 E-value=7.4e-07 Score=75.84 Aligned_cols=112 Identities=8% Similarity=0.007 Sum_probs=74.0
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------C---CCCeeEEeccccchhhHHHH
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P---IEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------~---~~~v~~i~gDi~~~~~~~~l 111 (179)
.+|||||||.|+.+.+++++.+ ..+|++||+++.. + .++++++.+|..+..
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p-------------~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l----- 152 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYP-------------QSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVA----- 152 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHST-------------TCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHH-----
T ss_pred CEEEEEECCcCHHHHHHHHHCC-------------CcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHH-----
Confidence 3999999999999999999765 4699999999831 1 357999999988742
Q ss_pred HhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHHH---H-----------HHHHHHHHHHHhhceEEEee
Q 030299 112 IRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSIQ---F-----------FIYELVFCLRQLLQYVILDG 173 (179)
Q Consensus 112 ~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~~---~-----------~~~~~~~~~~~~f~~v~~~~ 173 (179)
..+.+++||+|++|......-........-++.+...|+- + ++-.++-.|++.|..|.+..
T Consensus 153 -~~~~~~~fDvIi~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~~~~~~~~~~~~tL~~vF~~v~~~~ 227 (317)
T 3gjy_A 153 -ESFTPASRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEVFEHVAVIA 227 (317)
T ss_dssp -HTCCTTCEEEEEECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEECTTCHHHHHHHHHHHHHCSEEEEEE
T ss_pred -hhccCCCCCEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHHCCceEEEE
Confidence 1234568999999975332111111112223444444430 0 12355667899999998753
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.45 E-value=2.4e-07 Score=72.33 Aligned_cols=60 Identities=12% Similarity=0.080 Sum_probs=49.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCeeEEeccccchhhHHHHHhhcCCCC
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCK 119 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~~~~v~~i~gDi~~~~~~~~l~~~~~~~~ 119 (179)
.++.+|||||||+|.++..+ . ..|+|+|+++. ++.++++|+.+.+ ++++.
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l----~--------------~~v~~~D~s~~----~~~~~~~d~~~~~--------~~~~~ 115 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSI----R--------------NPVHCFDLASL----DPRVTVCDMAQVP--------LEDES 115 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHC----C--------------SCEEEEESSCS----STTEEESCTTSCS--------CCTTC
T ss_pred CCCCeEEEECCcCCHHHHHh----h--------------ccEEEEeCCCC----CceEEEeccccCC--------CCCCC
Confidence 67889999999999998876 2 47999999987 6778899998854 34568
Q ss_pred ccEEeeCCCC
Q 030299 120 ADLVVCDGAP 129 (179)
Q Consensus 120 ~D~VlsD~~~ 129 (179)
||+|++....
T Consensus 116 fD~v~~~~~l 125 (215)
T 2zfu_A 116 VDVAVFCLSL 125 (215)
T ss_dssp EEEEEEESCC
T ss_pred EeEEEEehhc
Confidence 9999997654
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=2.2e-07 Score=84.22 Aligned_cols=68 Identities=26% Similarity=0.227 Sum_probs=52.8
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCeeEEeccccchhh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNART 107 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~~~v~~i~gDi~~~~~ 107 (179)
+.++.+|||||||.|.+|+.++++ +..|+|||+++. .+..++.+.++|+.+..
T Consensus 64 ~~~~~~vLDvGCG~G~~~~~la~~---------------ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~- 127 (569)
T 4azs_A 64 LGRPLNVLDLGCAQGFFSLSLASK---------------GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVI- 127 (569)
T ss_dssp HTSCCEEEEETCTTSHHHHHHHHT---------------TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHH-
T ss_pred cCCCCeEEEECCCCcHHHHHHHhC---------------CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHh-
Confidence 356679999999999999999986 378999999983 12246888899988752
Q ss_pred HHHHHhhcCCCCccEEeeCC
Q 030299 108 AEVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~ 127 (179)
..+.++.||+|+|-.
T Consensus 128 -----~~~~~~~fD~v~~~e 142 (569)
T 4azs_A 128 -----AALEEGEFDLAIGLS 142 (569)
T ss_dssp -----HHCCTTSCSEEEEES
T ss_pred -----hhccCCCccEEEECc
Confidence 124456899999854
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=98.45 E-value=1.5e-07 Score=72.66 Aligned_cols=64 Identities=13% Similarity=0.059 Sum_probs=50.9
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------C----CCCeeEEeccccchhhH
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P----IEGVIQVQGDITNARTA 108 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~----~~~v~~i~gDi~~~~~~ 108 (179)
++++ +|||+|||+|.++..++++ + ..|+|+|+++.. . ..++.++++|+.+.+
T Consensus 28 ~~~~-~vLdiGcG~G~~~~~l~~~-~--------------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-- 89 (202)
T 2kw5_A 28 IPQG-KILCLAEGEGRNACFLASL-G--------------YEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFD-- 89 (202)
T ss_dssp SCSS-EEEECCCSCTHHHHHHHTT-T--------------CEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBS--
T ss_pred CCCC-CEEEECCCCCHhHHHHHhC-C--------------CeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcC--
Confidence 4677 9999999999999998875 2 689999999831 0 127889999998864
Q ss_pred HHHHhhcCCCCccEEeeC
Q 030299 109 EVVIRHFDGCKADLVVCD 126 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD 126 (179)
++++.||+|++.
T Consensus 90 ------~~~~~fD~v~~~ 101 (202)
T 2kw5_A 90 ------IVADAWEGIVSI 101 (202)
T ss_dssp ------CCTTTCSEEEEE
T ss_pred ------CCcCCccEEEEE
Confidence 345689999984
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=4.6e-07 Score=78.58 Aligned_cols=72 Identities=19% Similarity=0.226 Sum_probs=55.9
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~ 109 (179)
.++.+|||+|||+|.++..++++ + ..|+|+|+++.. ...+++++.+|+.+..
T Consensus 232 ~~~~~VLDlGcG~G~~~~~la~~-g--------------~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~--- 293 (381)
T 3dmg_A 232 VRGRQVLDLGAGYGALTLPLARM-G--------------AEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEAL--- 293 (381)
T ss_dssp TTTCEEEEETCTTSTTHHHHHHT-T--------------CEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTS---
T ss_pred CCCCEEEEEeeeCCHHHHHHHHc-C--------------CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhcc---
Confidence 36789999999999999999986 2 699999999841 1124889999998864
Q ss_pred HHHhhcCCCCccEEeeCCCCCCCCC
Q 030299 110 VVIRHFDGCKADLVVCDGAPDVTGL 134 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~~~~~g~ 134 (179)
..+.+||+|+++.+....+.
T Consensus 294 -----~~~~~fD~Ii~npp~~~~~~ 313 (381)
T 3dmg_A 294 -----TEEARFDIIVTNPPFHVGGA 313 (381)
T ss_dssp -----CTTCCEEEEEECCCCCTTCS
T ss_pred -----ccCCCeEEEEECCchhhccc
Confidence 22468999999977654333
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.43 E-value=4.4e-07 Score=75.36 Aligned_cols=66 Identities=20% Similarity=0.267 Sum_probs=53.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------C--CC-CCeeEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------A--PI-EGVIQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~--~~-~~v~~i~gDi~~~~~ 107 (179)
.++.+|||+|||+|.+|..++++. ..|+|+|+++. . +. ++++++++|+.+.+
T Consensus 27 ~~~~~VLDiG~G~G~lt~~L~~~~---------------~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~- 90 (285)
T 1zq9_A 27 RPTDVVLEVGPGTGNMTVKLLEKA---------------KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTD- 90 (285)
T ss_dssp CTTCEEEEECCTTSTTHHHHHHHS---------------SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSC-
T ss_pred CCCCEEEEEcCcccHHHHHHHhhC---------------CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceeccc-
Confidence 678899999999999999999873 58999999982 1 11 47999999998753
Q ss_pred HHHHHhhcCCCCccEEeeCCCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGAPD 130 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~~~ 130 (179)
+ ..||+|+++.+.+
T Consensus 91 -------~--~~fD~vv~nlpy~ 104 (285)
T 1zq9_A 91 -------L--PFFDTCVANLPYQ 104 (285)
T ss_dssp -------C--CCCSEEEEECCGG
T ss_pred -------c--hhhcEEEEecCcc
Confidence 2 2699999987643
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.42 E-value=8.6e-08 Score=72.15 Aligned_cols=65 Identities=15% Similarity=0.205 Sum_probs=51.8
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CCCCeeEEeccccchhhHHHHH
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVI 112 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~~~v~~i~gDi~~~~~~~~l~ 112 (179)
+.++.+|||+|||+|.++..++++. ..|+|+|+++.. ..++++++++| .+
T Consensus 15 ~~~~~~vLDiG~G~G~~~~~l~~~~---------------~~v~~vD~s~~~~~~a~~~~~~v~~~~~d---~~------ 70 (170)
T 3i9f_A 15 EGKKGVIVDYGCGNGFYCKYLLEFA---------------TKLYCIDINVIALKEVKEKFDSVITLSDP---KE------ 70 (170)
T ss_dssp SSCCEEEEEETCTTCTTHHHHHTTE---------------EEEEEECSCHHHHHHHHHHCTTSEEESSG---GG------
T ss_pred cCCCCeEEEECCCCCHHHHHHHhhc---------------CeEEEEeCCHHHHHHHHHhCCCcEEEeCC---CC------
Confidence 3678899999999999999998864 389999999831 25689999999 21
Q ss_pred hhcCCCCccEEeeCCCC
Q 030299 113 RHFDGCKADLVVCDGAP 129 (179)
Q Consensus 113 ~~~~~~~~D~VlsD~~~ 129 (179)
+++++||+|++....
T Consensus 71 --~~~~~~D~v~~~~~l 85 (170)
T 3i9f_A 71 --IPDNSVDFILFANSF 85 (170)
T ss_dssp --SCTTCEEEEEEESCS
T ss_pred --CCCCceEEEEEccch
Confidence 356789999987643
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.1e-07 Score=78.74 Aligned_cols=69 Identities=17% Similarity=0.049 Sum_probs=53.3
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCC-CeeEEeccccchh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNAR 106 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~-~v~~i~gDi~~~~ 106 (179)
++++.+|||||||+|.++..++.... +...|+|+|+++.. ... +++++++|+.+.+
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~------------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 183 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSAC------------PGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLD 183 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTC------------TTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCC
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcC------------CCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCC
Confidence 47899999999999999999863322 25799999999831 122 3899999999864
Q ss_pred hHHHHHhhcCCCCccEEeeCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
++ +.||+|++...
T Consensus 184 --------~~-~~fD~v~~~~~ 196 (305)
T 3ocj_A 184 --------TR-EGYDLLTSNGL 196 (305)
T ss_dssp --------CC-SCEEEEECCSS
T ss_pred --------cc-CCeEEEEECCh
Confidence 34 68999998653
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=9.5e-07 Score=78.04 Aligned_cols=77 Identities=10% Similarity=0.099 Sum_probs=57.1
Q ss_pred HHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC------C------------C--
Q 030299 32 IDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------A------------P-- 91 (179)
Q Consensus 32 id~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~------~------------~-- 91 (179)
+.+..+ ++++++|||||||+|..+..++...+ ..+|+|||+++. + .
T Consensus 165 il~~l~-l~~gd~VLDLGCGtG~l~l~lA~~~g-------------~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~ 230 (438)
T 3uwp_A 165 MIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATN-------------CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKK 230 (438)
T ss_dssp HHHHHC-CCTTCEEEEESCTTSHHHHHHHHHCC-------------CSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBC
T ss_pred HHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCC-------------CCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 333443 47899999999999999999988764 357999999972 0 1
Q ss_pred CCCeeEEeccccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 92 IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 92 ~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
..+|++++||+.+.+.... + ..+|+|+++..
T Consensus 231 ~~rVefi~GD~~~lp~~d~----~--~~aDVVf~Nn~ 261 (438)
T 3uwp_A 231 HAEYTLERGDFLSEEWRER----I--ANTSVIFVNNF 261 (438)
T ss_dssp CCEEEEEECCTTSHHHHHH----H--HTCSEEEECCT
T ss_pred CCCeEEEECcccCCccccc----c--CCccEEEEccc
Confidence 2579999999999764211 1 25999998753
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=5.4e-07 Score=74.82 Aligned_cols=64 Identities=16% Similarity=0.300 Sum_probs=51.8
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCC-eeEEeccccchhhH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEG-VIQVQGDITNARTA 108 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~-v~~i~gDi~~~~~~ 108 (179)
++.+|||+|||+|.++..++.. + ...|+|+|+++.. .+.+ ++++++|+++..
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~-------------~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~-- 186 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-S-------------DAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF-- 186 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-S-------------SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGG--
T ss_pred CCCEEEEEeCchhHHHHHHHHC-C-------------CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhc--
Confidence 6679999999999999999998 5 5899999999831 2343 999999998842
Q ss_pred HHHHhhcCCCCc---cEEeeCCC
Q 030299 109 EVVIRHFDGCKA---DLVVCDGA 128 (179)
Q Consensus 109 ~~l~~~~~~~~~---D~VlsD~~ 128 (179)
+ .+| |+|++|.+
T Consensus 187 -------~-~~f~~~D~IvsnPP 201 (284)
T 1nv8_A 187 -------K-EKFASIEMILSNPP 201 (284)
T ss_dssp -------G-GGTTTCCEEEECCC
T ss_pred -------c-cccCCCCEEEEcCC
Confidence 1 257 99999954
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.41 E-value=1.9e-07 Score=74.03 Aligned_cols=76 Identities=16% Similarity=0.160 Sum_probs=55.7
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------C-----CCCeeEEeccc
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-----IEGVIQVQGDI 102 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~-----~~~v~~i~gDi 102 (179)
++++.+|||+|||+|.++..+++..+.. + ....+.|+++|+++.. . ..++.++.+|+
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~----~---~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~ 154 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAK----G---VDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDG 154 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHS----C---CCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccc----c---CCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCc
Confidence 5788999999999999999999876410 0 0002589999999831 1 35899999999
Q ss_pred cchhhHHHHHhhcCCCCccEEeeCCCC
Q 030299 103 TNARTAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 103 ~~~~~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
.+... ...+||+|+++...
T Consensus 155 ~~~~~--------~~~~fD~I~~~~~~ 173 (227)
T 1r18_A 155 RKGYP--------PNAPYNAIHVGAAA 173 (227)
T ss_dssp GGCCG--------GGCSEEEEEECSCB
T ss_pred ccCCC--------cCCCccEEEECCch
Confidence 87321 12579999998764
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.41 E-value=3.1e-07 Score=75.51 Aligned_cols=70 Identities=9% Similarity=0.020 Sum_probs=53.9
Q ss_pred HhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCC-CeeEEeccc
Q 030299 35 EFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDI 102 (179)
Q Consensus 35 ~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~-~v~~i~gDi 102 (179)
...++++|.+|||||||+|..+..++...+ ...|+|+|+++.. .+. .+++.++|.
T Consensus 15 i~~~v~~g~~VlDIGtGsG~l~i~la~~~~-------------~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~ 81 (244)
T 3gnl_A 15 VASYITKNERIADIGSDHAYLPCFAVKNQT-------------ASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNG 81 (244)
T ss_dssp HHTTCCSSEEEEEETCSTTHHHHHHHHTTS-------------EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSG
T ss_pred HHHhCCCCCEEEEECCccHHHHHHHHHhCC-------------CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecch
Confidence 345678999999999999999999998743 4689999999831 233 488999999
Q ss_pred cchhhHHHHHhhcCCCCccEEee
Q 030299 103 TNARTAEVVIRHFDGCKADLVVC 125 (179)
Q Consensus 103 ~~~~~~~~l~~~~~~~~~D~Vls 125 (179)
.+... ++.+||+|+.
T Consensus 82 l~~~~--------~~~~~D~Ivi 96 (244)
T 3gnl_A 82 LAVIE--------KKDAIDTIVI 96 (244)
T ss_dssp GGGCC--------GGGCCCEEEE
T ss_pred hhccC--------ccccccEEEE
Confidence 88531 1235999875
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.1e-07 Score=73.81 Aligned_cols=65 Identities=17% Similarity=0.052 Sum_probs=50.3
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------C---CCCeeEEeccccchhhH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P---IEGVIQVQGDITNARTA 108 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~---~~~v~~i~gDi~~~~~~ 108 (179)
++.+|||+|||+|.++..++.. ...|+|+|+++.. . ..+++++++|+.+..
T Consensus 66 ~~~~vLDiGcG~G~~~~~l~~~---------------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-- 128 (235)
T 3lcc_A 66 PLGRALVPGCGGGHDVVAMASP---------------ERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-- 128 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHCBT---------------TEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC--
T ss_pred CCCCEEEeCCCCCHHHHHHHhC---------------CCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC--
Confidence 3459999999999999988653 4689999999831 1 235999999999854
Q ss_pred HHHHhhcCCCCccEEeeCCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~ 129 (179)
++..||+|++....
T Consensus 129 -------~~~~fD~v~~~~~l 142 (235)
T 3lcc_A 129 -------PTELFDLIFDYVFF 142 (235)
T ss_dssp -------CSSCEEEEEEESST
T ss_pred -------CCCCeeEEEEChhh
Confidence 34589999986543
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.6e-07 Score=75.38 Aligned_cols=70 Identities=11% Similarity=0.019 Sum_probs=54.1
Q ss_pred HhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCC-CeeEEeccc
Q 030299 35 EFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDI 102 (179)
Q Consensus 35 ~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~-~v~~i~gDi 102 (179)
..+++++|.+|+|+|||+|..+..++...+ ..+|+|+|+++.. .+. .+++.++|.
T Consensus 15 i~~~v~~g~~VlDIGtGsG~l~i~la~~~~-------------~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~ 81 (230)
T 3lec_A 15 VANYVPKGARLLDVGSDHAYLPIFLLQMGY-------------CDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANG 81 (230)
T ss_dssp HHTTSCTTEEEEEETCSTTHHHHHHHHTTC-------------EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSG
T ss_pred HHHhCCCCCEEEEECCchHHHHHHHHHhCC-------------CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch
Confidence 345678999999999999999999998743 4689999999831 233 599999999
Q ss_pred cchhhHHHHHhhcCCCCccEEee
Q 030299 103 TNARTAEVVIRHFDGCKADLVVC 125 (179)
Q Consensus 103 ~~~~~~~~l~~~~~~~~~D~Vls 125 (179)
.+... ++.+||+|+.
T Consensus 82 l~~~~--------~~~~~D~Ivi 96 (230)
T 3lec_A 82 LSAFE--------EADNIDTITI 96 (230)
T ss_dssp GGGCC--------GGGCCCEEEE
T ss_pred hhccc--------cccccCEEEE
Confidence 88531 2236998764
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=2.6e-07 Score=79.50 Aligned_cols=70 Identities=17% Similarity=0.108 Sum_probs=56.6
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNAR 106 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~ 106 (179)
..++.+|||+|||+|.++..++.... .+.|+|+|+++.. .+ .+++++++|+.+.+
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~-------------~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~ 281 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRY-------------SGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLS 281 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTC-------------CSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGG
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCC-------------CCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCC
Confidence 47889999999999999999998753 3589999999831 22 46899999999865
Q ss_pred hHHHHHhhcCCCCccEEeeCCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
++...||+|++|.+.
T Consensus 282 --------~~~~~fD~Ii~npPy 296 (373)
T 3tm4_A 282 --------QYVDSVDFAISNLPY 296 (373)
T ss_dssp --------GTCSCEEEEEEECCC
T ss_pred --------cccCCcCEEEECCCC
Confidence 234689999998764
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.40 E-value=9.4e-07 Score=76.98 Aligned_cols=69 Identities=22% Similarity=0.259 Sum_probs=50.6
Q ss_pred CCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchh
Q 030299 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNAR 106 (179)
Q Consensus 38 ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~ 106 (179)
++++|.+|||+|||+|+++..++.. + ..|+|+|+++.. .+. ..+.++|+++..
T Consensus 211 ~~~~g~~VLDlg~GtG~~sl~~a~~-g--------------a~V~avDis~~al~~a~~n~~~ng~~-~~~~~~D~~~~l 274 (393)
T 4dmg_A 211 MVRPGERVLDVYSYVGGFALRAARK-G--------------AYALAVDKDLEALGVLDQAALRLGLR-VDIRHGEALPTL 274 (393)
T ss_dssp TCCTTCEEEEESCTTTHHHHHHHHT-T--------------CEEEEEESCHHHHHHHHHHHHHHTCC-CEEEESCHHHHH
T ss_pred HhcCCCeEEEcccchhHHHHHHHHc-C--------------CeEEEEECCHHHHHHHHHHHHHhCCC-CcEEEccHHHHH
Confidence 3467999999999999999999886 3 459999999841 122 246688887742
Q ss_pred hHHHHHhhcCCCCccEEeeCCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
..+.+ .||+|++|.+.
T Consensus 275 ------~~~~~-~fD~Ii~dpP~ 290 (393)
T 4dmg_A 275 ------RGLEG-PFHHVLLDPPT 290 (393)
T ss_dssp ------HTCCC-CEEEEEECCCC
T ss_pred ------HHhcC-CCCEEEECCCc
Confidence 12334 49999999654
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=4.1e-07 Score=68.77 Aligned_cols=66 Identities=24% Similarity=0.320 Sum_probs=52.0
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNAR 106 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~ 106 (179)
+.++.+|||+|||+|.++..+++.. ..|+|+|+++.. .. +++.++++|+.+.
T Consensus 31 ~~~~~~vldiG~G~G~~~~~l~~~~---------------~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~- 94 (192)
T 1l3i_A 31 PGKNDVAVDVGCGTGGVTLELAGRV---------------RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA- 94 (192)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHTTS---------------SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHH-
T ss_pred CCCCCEEEEECCCCCHHHHHHHHhc---------------CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHh-
Confidence 4788899999999999999998763 589999999831 22 5788999998762
Q ss_pred hHHHHHhhcCC-CCccEEeeCCC
Q 030299 107 TAEVVIRHFDG-CKADLVVCDGA 128 (179)
Q Consensus 107 ~~~~l~~~~~~-~~~D~VlsD~~ 128 (179)
++. ..||+|++++.
T Consensus 95 --------~~~~~~~D~v~~~~~ 109 (192)
T 1l3i_A 95 --------LCKIPDIDIAVVGGS 109 (192)
T ss_dssp --------HTTSCCEEEEEESCC
T ss_pred --------cccCCCCCEEEECCc
Confidence 122 47999999865
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=1.2e-06 Score=74.74 Aligned_cols=75 Identities=23% Similarity=0.375 Sum_probs=56.5
Q ss_pred HhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC----CCCCCeeEEeccccch
Q 030299 30 LQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM----APIEGVIQVQGDITNA 105 (179)
Q Consensus 30 ~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~----~~~~~v~~i~gDi~~~ 105 (179)
..+.+.+.-+.++.+|||||||+|.++..++++.+ ...++++|+..+ ...++++++.+|+++
T Consensus 198 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~-------------~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~- 263 (372)
T 1fp1_D 198 KRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYP-------------LIKGINFDLPQVIENAPPLSGIEHVGGDMFA- 263 (372)
T ss_dssp HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCT-------------TCEEEEEECHHHHTTCCCCTTEEEEECCTTT-
T ss_pred HHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCC-------------CCeEEEeChHHHHHhhhhcCCCEEEeCCccc-
Confidence 34445554356788999999999999999999875 578999998322 234689999999987
Q ss_pred hhHHHHHhhcCCCCccEEeeCCC
Q 030299 106 RTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 106 ~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
+ ++. +|+|++...
T Consensus 264 ~--------~~~--~D~v~~~~~ 276 (372)
T 1fp1_D 264 S--------VPQ--GDAMILKAV 276 (372)
T ss_dssp C--------CCC--EEEEEEESS
T ss_pred C--------CCC--CCEEEEecc
Confidence 3 232 899988543
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.39 E-value=6.8e-07 Score=72.52 Aligned_cols=66 Identities=11% Similarity=0.193 Sum_probs=51.7
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CCCCCeeEEeccccchhhHHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~~~~~v~~i~gDi~~~~~~~~ 110 (179)
.++.+|||+|||+|.+|..++++. .+|+|+|+++. ...++++++++|+.+.+
T Consensus 29 ~~~~~VLDiG~G~G~lt~~l~~~~---------------~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~---- 89 (244)
T 1qam_A 29 NEHDNIFEIGSGKGHFTLELVQRC---------------NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFK---- 89 (244)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHS---------------SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCC----
T ss_pred CCCCEEEEEeCCchHHHHHHHHcC---------------CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCC----
Confidence 578899999999999999999873 68999999982 22368999999998864
Q ss_pred HHhhcC-CCCccEEeeCCCC
Q 030299 111 VIRHFD-GCKADLVVCDGAP 129 (179)
Q Consensus 111 l~~~~~-~~~~D~VlsD~~~ 129 (179)
++ +..+ .|+++.+.
T Consensus 90 ----~~~~~~~-~vv~nlPy 104 (244)
T 1qam_A 90 ----FPKNQSY-KIFGNIPY 104 (244)
T ss_dssp ----CCSSCCC-EEEEECCG
T ss_pred ----cccCCCe-EEEEeCCc
Confidence 22 2344 67887654
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=5e-07 Score=73.39 Aligned_cols=69 Identities=6% Similarity=-0.022 Sum_probs=53.5
Q ss_pred hCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCC-CeeEEecccc
Q 030299 36 FNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDIT 103 (179)
Q Consensus 36 ~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~-~v~~i~gDi~ 103 (179)
..++++|.+|+|+|||+|..+..++...+ ..+|+|+|+++.. .+. ++++..+|..
T Consensus 10 ~~~v~~g~~VlDIGtGsG~l~i~la~~~~-------------~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l 76 (225)
T 3kr9_A 10 ASFVSQGAILLDVGSDHAYLPIELVERGQ-------------IKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGL 76 (225)
T ss_dssp HTTSCTTEEEEEETCSTTHHHHHHHHTTS-------------EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGG
T ss_pred HHhCCCCCEEEEeCCCcHHHHHHHHHhCC-------------CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchh
Confidence 45678999999999999999999998754 4789999999831 233 5899999997
Q ss_pred chhhHHHHHhhcCCC-CccEEeeC
Q 030299 104 NARTAEVVIRHFDGC-KADLVVCD 126 (179)
Q Consensus 104 ~~~~~~~l~~~~~~~-~~D~VlsD 126 (179)
+.- +.. +||+|+.-
T Consensus 77 ~~l---------~~~~~~D~Ivia 91 (225)
T 3kr9_A 77 AAF---------EETDQVSVITIA 91 (225)
T ss_dssp GGC---------CGGGCCCEEEEE
T ss_pred hhc---------ccCcCCCEEEEc
Confidence 642 222 69988753
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=7.4e-07 Score=74.10 Aligned_cols=69 Identities=14% Similarity=-0.012 Sum_probs=54.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------CCCCeeEEeccccchhhHHHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------~~~~v~~i~gDi~~~~~~~~l 111 (179)
.++ +|||||||+|..|..++++. .+|+|+|+++.. +..+++++++|+.+.+..
T Consensus 46 ~~~-~VLEIG~G~G~lt~~L~~~~---------------~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~--- 106 (271)
T 3fut_A 46 FTG-PVFEVGPGLGALTRALLEAG---------------AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWE--- 106 (271)
T ss_dssp CCS-CEEEECCTTSHHHHHHHHTT---------------CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGG---
T ss_pred CCC-eEEEEeCchHHHHHHHHHcC---------------CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChh---
Confidence 677 99999999999999999873 589999999831 225799999999886531
Q ss_pred HhhcCCCCccEEeeCCCCCC
Q 030299 112 IRHFDGCKADLVVCDGAPDV 131 (179)
Q Consensus 112 ~~~~~~~~~D~VlsD~~~~~ 131 (179)
....+|.|+++.+-+.
T Consensus 107 ----~~~~~~~iv~NlPy~i 122 (271)
T 3fut_A 107 ----EVPQGSLLVANLPYHI 122 (271)
T ss_dssp ----GSCTTEEEEEEECSSC
T ss_pred ----hccCccEEEecCcccc
Confidence 0125899999986544
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.38 E-value=2.6e-07 Score=71.78 Aligned_cols=65 Identities=17% Similarity=0.173 Sum_probs=51.6
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CCCCeeEEeccccchhhHHHHH
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVI 112 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~~~v~~i~gDi~~~~~~~~l~ 112 (179)
+.++.+|||+|||+|.++..+ + ...|+|+|+++.. ..+++.++++|+.+.+
T Consensus 34 ~~~~~~vLdiG~G~G~~~~~l----~-------------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~------ 90 (211)
T 2gs9_A 34 LPPGESLLEVGAGTGYWLRRL----P-------------YPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALP------ 90 (211)
T ss_dssp CCCCSEEEEETCTTCHHHHHC----C-------------CSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCC------
T ss_pred cCCCCeEEEECCCCCHhHHhC----C-------------CCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCC------
Confidence 458889999999999999887 3 2389999999831 2368899999998754
Q ss_pred hhcCCCCccEEeeCCC
Q 030299 113 RHFDGCKADLVVCDGA 128 (179)
Q Consensus 113 ~~~~~~~~D~VlsD~~ 128 (179)
+++++||+|++...
T Consensus 91 --~~~~~fD~v~~~~~ 104 (211)
T 2gs9_A 91 --FPGESFDVVLLFTT 104 (211)
T ss_dssp --SCSSCEEEEEEESC
T ss_pred --CCCCcEEEEEEcCh
Confidence 35568999998754
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=5.6e-07 Score=71.73 Aligned_cols=69 Identities=13% Similarity=0.202 Sum_probs=53.1
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCeeEEeccccchhh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNART 107 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~~~v~~i~gDi~~~~~ 107 (179)
+.++.+|||+|||+|.++..+++..+ ..|+++|+++. ....++.++.+|+.....
T Consensus 89 ~~~~~~vLdiG~G~G~~~~~la~~~~--------------~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~ 154 (235)
T 1jg1_A 89 LKPGMNILEVGTGSGWNAALISEIVK--------------TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFP 154 (235)
T ss_dssp CCTTCCEEEECCTTSHHHHHHHHHHC--------------SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG
T ss_pred CCCCCEEEEEeCCcCHHHHHHHHHhC--------------CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCC
Confidence 36788999999999999999999863 58999999983 124578999999833211
Q ss_pred HHHHHhhcCCCCccEEeeCCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
...+||+|+++...
T Consensus 155 --------~~~~fD~Ii~~~~~ 168 (235)
T 1jg1_A 155 --------PKAPYDVIIVTAGA 168 (235)
T ss_dssp --------GGCCEEEEEECSBB
T ss_pred --------CCCCccEEEECCcH
Confidence 12359999998754
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.38 E-value=8.9e-07 Score=70.30 Aligned_cols=66 Identities=17% Similarity=0.112 Sum_probs=53.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~~ 107 (179)
.++.+|||+|||+|.++..++++ + .+|+++|+++.. .+ ++++++.+|+.+..
T Consensus 90 ~~~~~vldiG~G~G~~~~~l~~~-~--------------~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~- 153 (248)
T 2yvl_A 90 NKEKRVLEFGTGSGALLAVLSEV-A--------------GEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAE- 153 (248)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHH-S--------------SEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSC-
T ss_pred CCCCEEEEeCCCccHHHHHHHHh-C--------------CEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcc-
Confidence 68899999999999999999988 4 699999999831 22 57889999998742
Q ss_pred HHHHHhhcCCCCccEEeeCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~ 128 (179)
+++.+||+|+++..
T Consensus 154 -------~~~~~~D~v~~~~~ 167 (248)
T 2yvl_A 154 -------VPEGIFHAAFVDVR 167 (248)
T ss_dssp -------CCTTCBSEEEECSS
T ss_pred -------cCCCcccEEEECCc
Confidence 13468999999753
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.38 E-value=2.8e-07 Score=74.47 Aligned_cols=69 Identities=14% Similarity=0.183 Sum_probs=53.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CCCCeeEEeccccchhhHHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~~~~v~~i~gDi~~~~~~~~ 110 (179)
.++.+|||+|||+|.++..++++. ..|+|+|+++.. ..++++++++|+.+.+
T Consensus 28 ~~~~~VLDiG~G~G~~~~~l~~~~---------------~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~---- 88 (245)
T 1yub_A 28 KETDTVYEIGTGKGHLTTKLAKIS---------------KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQ---- 88 (245)
T ss_dssp CSSEEEEECSCCCSSCSHHHHHHS---------------SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTT----
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhC---------------CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcC----
Confidence 678899999999999999999873 689999999831 1247899999998864
Q ss_pred HHhhcC-CCCccEEeeCCCCCCC
Q 030299 111 VIRHFD-GCKADLVVCDGAPDVT 132 (179)
Q Consensus 111 l~~~~~-~~~~D~VlsD~~~~~~ 132 (179)
++ +.+| .|+++.+...+
T Consensus 89 ----~~~~~~f-~vv~n~Py~~~ 106 (245)
T 1yub_A 89 ----FPNKQRY-KIVGNIPYHLS 106 (245)
T ss_dssp ----CCCSSEE-EEEEECCSSSC
T ss_pred ----cccCCCc-EEEEeCCcccc
Confidence 23 2468 78888765443
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.37 E-value=3.8e-07 Score=72.38 Aligned_cols=72 Identities=17% Similarity=0.105 Sum_probs=55.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~~ 107 (179)
.++.+|||+|||+|.++..+++..+ .+.|+++|+++.. .. .++.++++|+.+...
T Consensus 53 ~~~~~vLdiG~G~G~~~~~la~~~~-------------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 119 (233)
T 2gpy_A 53 AAPARILEIGTAIGYSAIRMAQALP-------------EATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGE 119 (233)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHCT-------------TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHH
T ss_pred cCCCEEEEecCCCcHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHH
Confidence 5788999999999999999999875 4799999999831 22 369999999987421
Q ss_pred HHHHHhhcCCCCccEEeeCCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
. ...+++||+|++|...
T Consensus 120 ~-----~~~~~~fD~I~~~~~~ 136 (233)
T 2gpy_A 120 K-----LELYPLFDVLFIDAAK 136 (233)
T ss_dssp H-----HTTSCCEEEEEEEGGG
T ss_pred h-----cccCCCccEEEECCCH
Confidence 0 0113589999998753
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=9e-07 Score=76.55 Aligned_cols=72 Identities=15% Similarity=0.131 Sum_probs=54.7
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCC--CeeEEeccccchh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE--GVIQVQGDITNAR 106 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~--~v~~i~gDi~~~~ 106 (179)
.++.+|||+|||+|+++..++.+. ...|+|+|+++.. .+. +++++++|+.+..
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g--------------a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l 276 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG--------------AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYF 276 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT--------------BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHH
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC--------------CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHH
Confidence 678899999999999999998752 2589999999941 234 7999999998742
Q ss_pred hHHHHHhhcCCCCccEEeeCCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
. .+.. .+.+||+|++|.+.
T Consensus 277 ~--~~~~--~~~~fD~Ii~DPP~ 295 (385)
T 2b78_A 277 K--YARR--HHLTYDIIIIDPPS 295 (385)
T ss_dssp H--HHHH--TTCCEEEEEECCCC
T ss_pred H--HHHH--hCCCccEEEECCCC
Confidence 1 1111 23589999999654
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=7.1e-07 Score=72.57 Aligned_cols=65 Identities=18% Similarity=0.242 Sum_probs=50.7
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART 107 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~ 107 (179)
+.++.+|||+|||+|.++..+++. + ..|+|+|+++.. ... +.++++|+.+.
T Consensus 118 ~~~~~~VLDiGcG~G~l~~~la~~-g--------------~~v~gvDi~~~~v~~a~~n~~~~~~~-v~~~~~d~~~~-- 179 (254)
T 2nxc_A 118 LRPGDKVLDLGTGSGVLAIAAEKL-G--------------GKALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAA-- 179 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT-T--------------CEEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHH--
T ss_pred cCCCCEEEEecCCCcHHHHHHHHh-C--------------CeEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChhhc--
Confidence 578899999999999999998774 3 499999999842 122 78888888763
Q ss_pred HHHHHhhcCCCCccEEeeCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~ 128 (179)
++..+||+|+++..
T Consensus 180 -------~~~~~fD~Vv~n~~ 193 (254)
T 2nxc_A 180 -------LPFGPFDLLVANLY 193 (254)
T ss_dssp -------GGGCCEEEEEEECC
T ss_pred -------CcCCCCCEEEECCc
Confidence 22358999999753
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.37 E-value=4.6e-07 Score=71.41 Aligned_cols=75 Identities=13% Similarity=0.073 Sum_probs=55.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~~ 107 (179)
.++.+|||+|||+|.++..+++.++. .++|+++|+++.. .. .+++++++|+.+..
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~------------~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~- 134 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPA------------DGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETL- 134 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCT------------TCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHH-
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCC------------CCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHH-
Confidence 56789999999999999999987652 5799999999831 22 47899999987642
Q ss_pred HHHHHhhcCCCCccEEeeCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~ 128 (179)
..+...-...+||+|++|..
T Consensus 135 -~~~~~~~~~~~~D~v~~d~~ 154 (229)
T 2avd_A 135 -DELLAAGEAGTFDVAVVDAD 154 (229)
T ss_dssp -HHHHHTTCTTCEEEEEECSC
T ss_pred -HHHHhcCCCCCccEEEECCC
Confidence 11211101157999999875
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.36 E-value=3.6e-07 Score=77.78 Aligned_cols=70 Identities=19% Similarity=0.178 Sum_probs=52.9
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCC--CeeEEeccccchh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE--GVIQVQGDITNAR 106 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~--~v~~i~gDi~~~~ 106 (179)
.++.+|||||||+|+++..++.. + ..|+|+|+++.. .+. +++++++|+++..
T Consensus 152 ~~~~~VLDlgcGtG~~sl~la~~-g--------------a~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l 216 (332)
T 2igt_A 152 DRPLKVLNLFGYTGVASLVAAAA-G--------------AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFI 216 (332)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHT-T--------------CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHH
T ss_pred CCCCcEEEcccccCHHHHHHHHc-C--------------CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHH
Confidence 46789999999999999999885 2 499999999831 233 3899999998753
Q ss_pred hHHHHHhhcCCCCccEEeeCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
.. +.. .+.+||+|++|.+
T Consensus 217 ~~--~~~--~~~~fD~Ii~dPP 234 (332)
T 2igt_A 217 QR--EER--RGSTYDIILTDPP 234 (332)
T ss_dssp HH--HHH--HTCCBSEEEECCC
T ss_pred HH--HHh--cCCCceEEEECCc
Confidence 11 110 1358999999975
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.36 E-value=4e-07 Score=74.96 Aligned_cols=103 Identities=11% Similarity=0.067 Sum_probs=70.9
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CCCCCeeEEeccccchhhHHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~~~~~v~~i~gDi~~~~~~~~ 110 (179)
.++++|||||||+|..|..++++. .+|+|+|+++. ...++++++++|+.+.+..
T Consensus 28 ~~~~~VLEIG~G~G~lt~~La~~~---------------~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~-- 90 (255)
T 3tqs_A 28 QKTDTLVEIGPGRGALTDYLLTEC---------------DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFS-- 90 (255)
T ss_dssp CTTCEEEEECCTTTTTHHHHTTTS---------------SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGG--
T ss_pred CCcCEEEEEcccccHHHHHHHHhC---------------CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHH--
Confidence 678999999999999999998862 68999999983 1246899999999987531
Q ss_pred HHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHHHH-----------------H-------HHHHHHHHHHhh
Q 030299 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSIQF-----------------F-------IYELVFCLRQLL 166 (179)
Q Consensus 111 l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~~~-----------------~-------~~~~~~~~~~~f 166 (179)
..+.+.++| |+++.+. ..+..++...|... + .++.+.++-|.|
T Consensus 91 --~~~~~~~~~-vv~NlPY----------~is~~il~~ll~~~~~~~~~~lm~QkEva~Rl~a~pg~k~yg~lsv~~q~~ 157 (255)
T 3tqs_A 91 --SVKTDKPLR-VVGNLPY----------NISTPLLFHLFSQIHCIEDMHFMLQKEVVRRITAEVGSHDYGRLSVMAQYF 157 (255)
T ss_dssp --GSCCSSCEE-EEEECCH----------HHHHHHHHHHHHTGGGEEEEEEEEEHHHHHHHTCCTTSTTCSHHHHHHHHH
T ss_pred --HhccCCCeE-EEecCCc----------ccCHHHHHHHHhCCCChheEEEEEeHHHHHHhhCCCCCCccchhhheeeee
Confidence 111234678 7777643 34445554444321 1 155667777877
Q ss_pred ceEEEe
Q 030299 167 QYVILD 172 (179)
Q Consensus 167 ~~v~~~ 172 (179)
-.|++.
T Consensus 158 ~~~~~~ 163 (255)
T 3tqs_A 158 CDNTYL 163 (255)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 777654
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=6.1e-07 Score=78.69 Aligned_cols=70 Identities=20% Similarity=0.263 Sum_probs=53.7
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~~~v~~i~gDi~~~~~~ 108 (179)
.++.+|||||||+|.++..++++ . ..|+|+|+++. ..+.+++++++|+.+....
T Consensus 285 ~~~~~VLDlgcG~G~~~~~la~~-~--------------~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~ 349 (433)
T 1uwv_A 285 QPEDRVLDLFCGMGNFTLPLATQ-A--------------ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTK 349 (433)
T ss_dssp CTTCEEEEESCTTTTTHHHHHTT-S--------------SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSS
T ss_pred CCCCEEEECCCCCCHHHHHHHhh-C--------------CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhh
Confidence 56789999999999999999886 2 68999999983 1246899999999873210
Q ss_pred HHHHhhcCCCCccEEeeCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~ 128 (179)
+ .+.+.+||+|++|.+
T Consensus 350 --~--~~~~~~fD~Vv~dPP 365 (433)
T 1uwv_A 350 --Q--PWAKNGFDKVLLDPA 365 (433)
T ss_dssp --S--GGGTTCCSEEEECCC
T ss_pred --h--hhhcCCCCEEEECCC
Confidence 0 023457999999854
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.35 E-value=8.7e-07 Score=76.56 Aligned_cols=72 Identities=19% Similarity=0.158 Sum_probs=54.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-C-CeeEEeccccchh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-E-GVIQVQGDITNAR 106 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~-~v~~i~gDi~~~~ 106 (179)
.++.+|||+|||+|+++..++... ...|+|+|+++.. .+ . +++++++|+++..
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g--------------~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~ 284 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGG--------------CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLL 284 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTT--------------CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHH
T ss_pred hCCCeEEEeeccCCHHHHHHHHCC--------------CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHH
Confidence 578899999999999999998862 3689999999831 24 4 7899999998753
Q ss_pred hHHHHHhhcCCCCccEEeeCCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
. .+.. .+.+||+|++|.+.
T Consensus 285 ~--~~~~--~~~~fD~Ii~dpP~ 303 (396)
T 3c0k_A 285 R--TYRD--RGEKFDVIVMDPPK 303 (396)
T ss_dssp H--HHHH--TTCCEEEEEECCSS
T ss_pred H--HHHh--cCCCCCEEEECCCC
Confidence 2 1111 13589999999753
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.35 E-value=7.8e-07 Score=71.56 Aligned_cols=75 Identities=15% Similarity=0.092 Sum_probs=55.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~~ 107 (179)
.++.+|||||||+|..+..+++.++. .++|+++|+++.. .+ .+++++.+|..+..
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~------------~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l- 135 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPD------------DGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLAL- 135 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCT------------TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHH-
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCC------------CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH-
Confidence 46779999999999999999998763 5899999999831 23 25889999987642
Q ss_pred HHHHHhh-cCCCCccEEeeCCC
Q 030299 108 AEVVIRH-FDGCKADLVVCDGA 128 (179)
Q Consensus 108 ~~~l~~~-~~~~~~D~VlsD~~ 128 (179)
..+... ...++||+|++|+.
T Consensus 136 -~~l~~~~~~~~~fD~I~~d~~ 156 (237)
T 3c3y_A 136 -DNLLQGQESEGSYDFGFVDAD 156 (237)
T ss_dssp -HHHHHSTTCTTCEEEEEECSC
T ss_pred -HHHHhccCCCCCcCEEEECCc
Confidence 111111 01368999999964
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=98.35 E-value=3.6e-07 Score=75.68 Aligned_cols=71 Identities=11% Similarity=0.081 Sum_probs=48.0
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-C-----CCCCeeEEeccccchhhHHHHH
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-A-----PIEGVIQVQGDITNARTAEVVI 112 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-~-----~~~~v~~i~gDi~~~~~~~~l~ 112 (179)
+.++.+|||||||+|.++..++++ ...|+|+|+++. - ..... .+++|+.+.... +.
T Consensus 43 l~~g~~VLDlGcGtG~~a~~La~~---------------g~~V~gvD~S~~ml~~Ar~~~~~~-~v~~~~~~~~~~--~~ 104 (261)
T 3iv6_A 43 IVPGSTVAVIGASTRFLIEKALER---------------GASVTVFDFSQRMCDDLAEALADR-CVTIDLLDITAE--IP 104 (261)
T ss_dssp CCTTCEEEEECTTCHHHHHHHHHT---------------TCEEEEEESCHHHHHHHHHHTSSS-CCEEEECCTTSC--CC
T ss_pred CCCcCEEEEEeCcchHHHHHHHhc---------------CCEEEEEECCHHHHHHHHHHHHhc-cceeeeeecccc--cc
Confidence 378899999999999999999986 268999999983 1 11111 345666554310 00
Q ss_pred hhcCCCCccEEeeCCC
Q 030299 113 RHFDGCKADLVVCDGA 128 (179)
Q Consensus 113 ~~~~~~~~D~VlsD~~ 128 (179)
... +++||+|+++..
T Consensus 105 ~~~-~~~fD~Vv~~~~ 119 (261)
T 3iv6_A 105 KEL-AGHFDFVLNDRL 119 (261)
T ss_dssp GGG-TTCCSEEEEESC
T ss_pred ccc-CCCccEEEEhhh
Confidence 011 358999999864
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=7e-07 Score=72.49 Aligned_cols=75 Identities=12% Similarity=0.092 Sum_probs=55.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~~ 107 (179)
.++.+|||||||+|..+..+++.++. .++|+++|+++.. .. .+++++.+|..+..
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~------------~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l- 144 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPE------------DGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVL- 144 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCT------------TCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHH-
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCC------------CCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHH-
Confidence 45779999999999999999998753 5899999999831 22 36889999987642
Q ss_pred HHHHHhh-cCCCCccEEeeCCC
Q 030299 108 AEVVIRH-FDGCKADLVVCDGA 128 (179)
Q Consensus 108 ~~~l~~~-~~~~~~D~VlsD~~ 128 (179)
..+... ...++||+|++|+.
T Consensus 145 -~~l~~~~~~~~~fD~V~~d~~ 165 (247)
T 1sui_A 145 -DEMIKDEKNHGSYDFIFVDAD 165 (247)
T ss_dssp -HHHHHSGGGTTCBSEEEECSC
T ss_pred -HHHHhccCCCCCEEEEEEcCc
Confidence 111110 01368999999975
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=1.3e-06 Score=81.20 Aligned_cols=70 Identities=14% Similarity=0.020 Sum_probs=54.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC--CCeeEEeccccchh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI--EGVIQVQGDITNAR 106 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~--~~v~~i~gDi~~~~ 106 (179)
.+|.+|||||||+|+++.+++.. + ..+|+++|+++.. .+ .+++++++|+++..
T Consensus 538 ~~g~~VLDlg~GtG~~sl~aa~~-g-------------a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l 603 (703)
T 3v97_A 538 SKGKDFLNLFSYTGSATVHAGLG-G-------------ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWL 603 (703)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHT-T-------------CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHH
T ss_pred cCCCcEEEeeechhHHHHHHHHC-C-------------CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHH
Confidence 46889999999999999999874 2 3579999999831 23 36899999998842
Q ss_pred hHHHHHhhcCCCCccEEeeCCCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGAPD 130 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~~~ 130 (179)
. ..+++||+|++|.+.-
T Consensus 604 ~-------~~~~~fD~Ii~DPP~f 620 (703)
T 3v97_A 604 R-------EANEQFDLIFIDPPTF 620 (703)
T ss_dssp H-------HCCCCEEEEEECCCSB
T ss_pred H-------hcCCCccEEEECCccc
Confidence 1 1246899999997643
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.8e-06 Score=71.30 Aligned_cols=75 Identities=19% Similarity=0.209 Sum_probs=54.4
Q ss_pred CCCEEEEEccCC---ChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CCCCCeeEEeccccchhhH
Q 030299 41 GVKRVVDLCAAP---GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTA 108 (179)
Q Consensus 41 ~g~~VlDLgagp---Gg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~~~~~v~~i~gDi~~~~~~ 108 (179)
+..+|||||||+ |.+++.+.+..+ ..+|+++|++|. ....+++++++|+++.+..
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p-------------~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~ 143 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNP-------------DARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYI 143 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCT-------------TCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHH
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCC-------------CCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhh
Confidence 347999999999 999887766644 589999999983 1235799999999986432
Q ss_pred ---HHHHhhcCCCCccEEeeCCC
Q 030299 109 ---EVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 109 ---~~l~~~~~~~~~D~VlsD~~ 128 (179)
.++.+.++-..+|+|++.+.
T Consensus 144 ~~~~~~~~~~d~~~~d~v~~~~v 166 (274)
T 2qe6_A 144 LNHPDVRRMIDFSRPAAIMLVGM 166 (274)
T ss_dssp HHSHHHHHHCCTTSCCEEEETTT
T ss_pred hccchhhccCCCCCCEEEEEech
Confidence 11112344347999998764
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=98.33 E-value=5.4e-07 Score=75.51 Aligned_cols=75 Identities=17% Similarity=0.056 Sum_probs=50.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCC------CeeEEeccc
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE------GVIQVQGDI 102 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~------~v~~i~gDi 102 (179)
.++.+|||||||+|+.+..++... ...|+|+|+++.. ... ++++.++|+
T Consensus 47 ~~~~~VLDlGCG~G~~l~~~~~~~--------------~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~ 112 (302)
T 2vdw_A 47 SNKRKVLAIDFGNGADLEKYFYGE--------------IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETI 112 (302)
T ss_dssp CSCCEEEETTCTTTTTHHHHHHTT--------------CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCT
T ss_pred CCCCeEEEEecCCcHhHHHHHhcC--------------CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhc
Confidence 357899999999998776555432 3689999999831 111 256778888
Q ss_pred cchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 103 TNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 103 ~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
........+...+++++||+|+|..+
T Consensus 113 ~~d~~~~~l~~~~~~~~FD~V~~~~~ 138 (302)
T 2vdw_A 113 RSDTFVSSVREVFYFGKFNIIDWQFA 138 (302)
T ss_dssp TSSSHHHHHHTTCCSSCEEEEEEESC
T ss_pred ccchhhhhhhccccCCCeeEEEECch
Confidence 54333233433355678999998654
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.1e-06 Score=70.25 Aligned_cols=75 Identities=21% Similarity=0.239 Sum_probs=54.9
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCC-CeeEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~-~v~~i~gDi~~~~~ 107 (179)
.++.+|||||||+|.++..+++..+. .++|+++|+++.. ... ++.++++|+.+...
T Consensus 59 ~~~~~VLdiG~G~G~~~~~la~~~~~------------~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~ 126 (239)
T 2hnk_A 59 SGAKRIIEIGTFTGYSSLCFASALPE------------DGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQ 126 (239)
T ss_dssp HTCSEEEEECCTTCHHHHHHHHHSCT------------TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHH
T ss_pred hCcCEEEEEeCCCCHHHHHHHHhCCC------------CCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHH
Confidence 57889999999999999999998752 4799999999831 223 38899999876321
Q ss_pred HHHHH---------hhcCC--CCccEEeeCCC
Q 030299 108 AEVVI---------RHFDG--CKADLVVCDGA 128 (179)
Q Consensus 108 ~~~l~---------~~~~~--~~~D~VlsD~~ 128 (179)
++. ..++. ++||+|+++..
T Consensus 127 --~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~ 156 (239)
T 2hnk_A 127 --VLIDSKSAPSWASDFAFGPSSIDLFFLDAD 156 (239)
T ss_dssp --HHHHCSSCCGGGTTTCCSTTCEEEEEECSC
T ss_pred --HHHhhcccccccccccCCCCCcCEEEEeCC
Confidence 111 11232 68999999853
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=9.5e-07 Score=76.03 Aligned_cols=70 Identities=21% Similarity=0.294 Sum_probs=54.3
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~~ 109 (179)
++.+|||+|||+|+++..++.. . ..|+|+|+++.. .+.+++++++|+.+...
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~-~--------------~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~-- 271 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG-F--------------REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLR-- 271 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH-E--------------EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHH--
T ss_pred CCCeEEEeeeccCHHHHHHHHh-C--------------CEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHH--
Confidence 7889999999999999999987 3 689999999831 24568999999987532
Q ss_pred HHHhhcCCCCccEEeeCCCC
Q 030299 110 VVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~~ 129 (179)
.+.. .+.+||+|++|.+.
T Consensus 272 ~~~~--~~~~fD~Ii~dpP~ 289 (382)
T 1wxx_A 272 RLEK--EGERFDLVVLDPPA 289 (382)
T ss_dssp HHHH--TTCCEEEEEECCCC
T ss_pred HHHh--cCCCeeEEEECCCC
Confidence 1111 24589999999753
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=98.29 E-value=7.7e-07 Score=70.20 Aligned_cols=64 Identities=17% Similarity=0.144 Sum_probs=50.9
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhH
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~ 108 (179)
++++.+|||+|||+|.++..++++ ..|+|+|+++.. ...++.++++|+.+.+
T Consensus 31 ~~~~~~vLdiG~G~G~~~~~l~~~----------------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-- 92 (243)
T 3d2l_A 31 VEPGKRIADIGCGTGTATLLLADH----------------YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELE-- 92 (243)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT----------------SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCC--
T ss_pred cCCCCeEEEecCCCCHHHHHHhhC----------------CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcC--
Confidence 577899999999999999988664 479999999831 1247899999998754
Q ss_pred HHHHhhcCCCCccEEeeCC
Q 030299 109 EVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~ 127 (179)
++ .+||+|++..
T Consensus 93 ------~~-~~fD~v~~~~ 104 (243)
T 3d2l_A 93 ------LP-EPVDAITILC 104 (243)
T ss_dssp ------CS-SCEEEEEECT
T ss_pred ------CC-CCcCEEEEeC
Confidence 23 6899999864
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=98.29 E-value=6.5e-07 Score=69.68 Aligned_cols=68 Identities=19% Similarity=0.232 Sum_probs=51.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCeeEEeccccchhhHHHHHhhc
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHF 115 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----~~~~v~~i~gDi~~~~~~~~l~~~~ 115 (179)
.++.+|||+|||+|.++..++++ + ..|+|+|+++.. ......++++|+.+... .+
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~-~--------------~~~~~~D~~~~~~~~~~~~~~~~~~~d~~~~~~------~~ 89 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKEN-G--------------TRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDM------PY 89 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTT-T--------------CEEEEEESSHHHHHHHHTTSSEEEESCTTTCCC------CS
T ss_pred cCCCcEEEeCCCCCHHHHHHHhc-C--------------CeEEEEeCCHHHHHHHHHhCCcEEEcchhhcCC------CC
Confidence 57889999999999999999876 4 689999999831 11224678899886321 13
Q ss_pred CCCCccEEeeCCC
Q 030299 116 DGCKADLVVCDGA 128 (179)
Q Consensus 116 ~~~~~D~VlsD~~ 128 (179)
++++||+|++...
T Consensus 90 ~~~~fD~v~~~~~ 102 (230)
T 3cc8_A 90 EEEQFDCVIFGDV 102 (230)
T ss_dssp CTTCEEEEEEESC
T ss_pred CCCccCEEEECCh
Confidence 4568999998653
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=1.2e-06 Score=72.57 Aligned_cols=69 Identities=13% Similarity=0.082 Sum_probs=53.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CC------CCCeeEEeccccc
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------AP------IEGVIQVQGDITN 104 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~~------~~~v~~i~gDi~~ 104 (179)
.++.+|||||||+|+++..+++..+ ..+|+++|+++. .. .++++++.+|+.+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~-------------~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~ 143 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKS-------------VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASK 143 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTT-------------CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHH
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCC-------------CCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHH
Confidence 4578999999999999999987543 479999999983 11 3578999999876
Q ss_pred hhhHHHHHhhcCCCCccEEeeCCC
Q 030299 105 ARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 105 ~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
... . .+++||+|++|..
T Consensus 144 ~l~------~-~~~~fD~Ii~d~~ 160 (283)
T 2i7c_A 144 FLE------N-VTNTYDVIIVDSS 160 (283)
T ss_dssp HHH------H-CCSCEEEEEEECC
T ss_pred HHH------h-CCCCceEEEEcCC
Confidence 421 1 2468999999974
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.28 E-value=1.5e-06 Score=74.10 Aligned_cols=70 Identities=19% Similarity=0.163 Sum_probs=54.1
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------------CCCCeeEEeccccc
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------PIEGVIQVQGDITN 104 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------------~~~~v~~i~gDi~~ 104 (179)
.++.+|||||||+|..+..+++..+ ..+|+++|+++.. ..++++++++|+.+
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~-------------~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~ 185 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHAS-------------IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVA 185 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTT-------------CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHH
T ss_pred CCCCEEEEECCCccHHHHHHHHcCC-------------CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHH
Confidence 5678999999999999999987643 4799999999831 12579999999876
Q ss_pred hhhHHHHHhhcCCCCccEEeeCCC
Q 030299 105 ARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 105 ~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
.. ..+++++||+|++|..
T Consensus 186 ~l------~~~~~~~fDlIi~d~~ 203 (334)
T 1xj5_A 186 FL------KNAAEGSYDAVIVDSS 203 (334)
T ss_dssp HH------HTSCTTCEEEEEECCC
T ss_pred HH------HhccCCCccEEEECCC
Confidence 41 1133468999999975
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.28 E-value=7.9e-07 Score=70.01 Aligned_cols=64 Identities=23% Similarity=0.222 Sum_probs=51.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~ 109 (179)
.++.+|||+|||+|.++..++++ + ..|+|+|+++.. ...++.++++|+.+.+
T Consensus 36 ~~~~~vLdiG~G~G~~~~~l~~~-~--------------~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--- 97 (246)
T 1y8c_A 36 LVFDDYLDLACGTGNLTENLCPK-F--------------KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLN--- 97 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGG-S--------------SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCC---
T ss_pred CCCCeEEEeCCCCCHHHHHHHHC-C--------------CcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCC---
Confidence 37789999999999999999876 2 589999999831 0127899999998864
Q ss_pred HHHhhcCCCCccEEeeCC
Q 030299 110 VVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~ 127 (179)
++ ++||+|++..
T Consensus 98 -----~~-~~fD~v~~~~ 109 (246)
T 1y8c_A 98 -----IN-RKFDLITCCL 109 (246)
T ss_dssp -----CS-CCEEEEEECT
T ss_pred -----cc-CCceEEEEcC
Confidence 23 6899999965
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.28 E-value=8e-07 Score=71.76 Aligned_cols=64 Identities=22% Similarity=0.236 Sum_probs=49.7
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CCCCeeEEeccccchhhHHHHHh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
.++.+|||||||+|.++..++++ ...|+|+|+++.. ...+ .++++|+.+.+
T Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~---------------~~~v~gvD~s~~~l~~a~~~~~~-~~~~~d~~~~~------- 109 (260)
T 2avn_A 53 KNPCRVLDLGGGTGKWSLFLQER---------------GFEVVLVDPSKEMLEVAREKGVK-NVVEAKAEDLP------- 109 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTT---------------TCEEEEEESCHHHHHHHHHHTCS-CEEECCTTSCC-------
T ss_pred CCCCeEEEeCCCcCHHHHHHHHc---------------CCeEEEEeCCHHHHHHHHhhcCC-CEEECcHHHCC-------
Confidence 57889999999999999999876 2689999999831 1122 27889998754
Q ss_pred hcCCCCccEEeeCC
Q 030299 114 HFDGCKADLVVCDG 127 (179)
Q Consensus 114 ~~~~~~~D~VlsD~ 127 (179)
++++.||+|++..
T Consensus 110 -~~~~~fD~v~~~~ 122 (260)
T 2avn_A 110 -FPSGAFEAVLALG 122 (260)
T ss_dssp -SCTTCEEEEEECS
T ss_pred -CCCCCEEEEEEcc
Confidence 3457899999864
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=98.27 E-value=6e-07 Score=70.14 Aligned_cols=69 Identities=19% Similarity=0.089 Sum_probs=52.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~~ 107 (179)
.++.+|||+|||+|.++..+++..+. .++|+++|+++.. .. .+++++++|..+..
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~~------------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~- 121 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAISI------------SSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIA- 121 (210)
T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSCT------------TCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHH-
T ss_pred hCCCEEEEEcCCccHHHHHHHHhCCC------------CCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHh-
Confidence 46779999999999999999987652 4799999999831 12 35889999987641
Q ss_pred HHHHHhhcCCCCccEEeeCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~ 128 (179)
..+ +. ||+|++|+.
T Consensus 122 -----~~~-~~-fD~v~~~~~ 135 (210)
T 3c3p_A 122 -----AGQ-RD-IDILFMDCD 135 (210)
T ss_dssp -----TTC-CS-EEEEEEETT
T ss_pred -----ccC-CC-CCEEEEcCC
Confidence 112 34 999999853
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=1.4e-06 Score=73.80 Aligned_cols=69 Identities=13% Similarity=0.082 Sum_probs=53.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CC------CCCeeEEeccccc
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------AP------IEGVIQVQGDITN 104 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~~------~~~v~~i~gDi~~ 104 (179)
.++.+|||||||+|+.+..+++..+ ..+|+++|+++. .. .++++++++|+.+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~-------------~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~ 181 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKS-------------VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASK 181 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTT-------------CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHH
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCC-------------CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHH
Confidence 4568999999999999999987643 479999999983 11 2579999999876
Q ss_pred hhhHHHHHhhcCCCCccEEeeCCC
Q 030299 105 ARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 105 ~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
... . .+++||+|++|..
T Consensus 182 ~l~------~-~~~~fDvIi~d~~ 198 (321)
T 2pt6_A 182 FLE------N-VTNTYDVIIVDSS 198 (321)
T ss_dssp HHH------H-CCSCEEEEEEECC
T ss_pred HHh------h-cCCCceEEEECCc
Confidence 421 1 2468999999974
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=7.6e-07 Score=74.56 Aligned_cols=71 Identities=14% Similarity=0.040 Sum_probs=54.1
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------------CCCCeeEEeccccc
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------PIEGVIQVQGDITN 104 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------------~~~~v~~i~gDi~~ 104 (179)
.++.+|||||||+|+++..+++..+ ...|+++|+++.. ..++++++.+|+.+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~-------------~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~ 160 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGT-------------VEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLA 160 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTT-------------CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCC-------------CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHH
Confidence 5678999999999999999987643 4799999999831 12579999999877
Q ss_pred hhhHHHHHhhcCCCCccEEeeCCCC
Q 030299 105 ARTAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 105 ~~~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
... ...+++||+|++|...
T Consensus 161 ~~~------~~~~~~fDvIi~d~~~ 179 (304)
T 3bwc_A 161 FVR------QTPDNTYDVVIIDTTD 179 (304)
T ss_dssp HHH------SSCTTCEEEEEEECC-
T ss_pred HHH------hccCCceeEEEECCCC
Confidence 421 1135689999998753
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=8.8e-07 Score=72.28 Aligned_cols=68 Identities=21% Similarity=0.253 Sum_probs=52.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------------CCCCeeEEeccccc
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------PIEGVIQVQGDITN 104 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------------~~~~v~~i~gDi~~ 104 (179)
.++.+|||||||+|.++..++++ + ..|+|+|+++.. ...++.+.++|+.+
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~~-~--------------~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~ 120 (293)
T 3thr_A 56 HGCHRVLDVACGTGVDSIMLVEE-G--------------FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT 120 (293)
T ss_dssp TTCCEEEETTCTTSHHHHHHHHT-T--------------CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGG
T ss_pred cCCCEEEEecCCCCHHHHHHHHC-C--------------CeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhh
Confidence 46789999999999999999886 2 599999999831 12467788999887
Q ss_pred hhhHHHHHhhcCCCCccEEeeCC
Q 030299 105 ARTAEVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 105 ~~~~~~l~~~~~~~~~D~VlsD~ 127 (179)
.+. .+ +++++||+|++.+
T Consensus 121 ~~~--~~---~~~~~fD~V~~~g 138 (293)
T 3thr_A 121 LDK--DV---PAGDGFDAVICLG 138 (293)
T ss_dssp HHH--HS---CCTTCEEEEEECT
T ss_pred Ccc--cc---ccCCCeEEEEEcC
Confidence 531 11 3567899999963
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=9.3e-07 Score=72.79 Aligned_cols=62 Identities=19% Similarity=0.164 Sum_probs=49.4
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CC-----CCeeEEeccccchh
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PI-----EGVIQVQGDITNAR 106 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~~-----~~v~~i~gDi~~~~ 106 (179)
++.+|||||||+|.++..++++ + ..|+|+|+++.. .. .+++++++|+.+.+
T Consensus 82 ~~~~vLDlGcG~G~~~~~l~~~-~--------------~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~ 146 (299)
T 3g2m_A 82 VSGPVLELAAGMGRLTFPFLDL-G--------------WEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFA 146 (299)
T ss_dssp CCSCEEEETCTTTTTHHHHHTT-T--------------CCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCC
T ss_pred CCCcEEEEeccCCHHHHHHHHc-C--------------CeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCC
Confidence 3459999999999999999886 2 589999999831 11 57999999999864
Q ss_pred hHHHHHhhcCCCCccEEeeC
Q 030299 107 TAEVVIRHFDGCKADLVVCD 126 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD 126 (179)
+ +++||+|++.
T Consensus 147 --------~-~~~fD~v~~~ 157 (299)
T 3g2m_A 147 --------L-DKRFGTVVIS 157 (299)
T ss_dssp --------C-SCCEEEEEEC
T ss_pred --------c-CCCcCEEEEC
Confidence 2 4689998864
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.26 E-value=6.3e-07 Score=85.00 Aligned_cols=69 Identities=19% Similarity=0.244 Sum_probs=55.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC------C-----------CCCCeeEEeccc
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------A-----------PIEGVIQVQGDI 102 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~------~-----------~~~~v~~i~gDi 102 (179)
.++.+|||||||+|.++..++++.++ ...|+|+|+++. + ..++++++++|+
T Consensus 720 ~~g~rVLDVGCGTG~lai~LAr~g~p------------~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa 787 (950)
T 3htx_A 720 SSASTLVDFGCGSGSLLDSLLDYPTS------------LQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSI 787 (950)
T ss_dssp SCCSEEEEETCSSSHHHHHHTSSCCC------------CCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCT
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCC------------CCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECch
Confidence 37889999999999999999887532 469999999983 1 235799999999
Q ss_pred cchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 103 TNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 103 ~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
++.+ +..+.||+|++...
T Consensus 788 ~dLp--------~~d~sFDlVV~~eV 805 (950)
T 3htx_A 788 LEFD--------SRLHDVDIGTCLEV 805 (950)
T ss_dssp TSCC--------TTSCSCCEEEEESC
T ss_pred HhCC--------cccCCeeEEEEeCc
Confidence 9865 34578999999543
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.25 E-value=7.2e-07 Score=77.00 Aligned_cols=73 Identities=22% Similarity=0.265 Sum_probs=55.2
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCC-CeeEEeccccchh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNAR 106 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~-~v~~i~gDi~~~~ 106 (179)
.+++.+|||+|||+|+++..++.. + ...|+|+|+++.. .+. +++++++|+.+..
T Consensus 215 ~~~~~~VLDl~~G~G~~~~~la~~-g-------------~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~ 280 (396)
T 2as0_A 215 VQPGDRVLDVFTYTGGFAIHAAIA-G-------------ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEM 280 (396)
T ss_dssp CCTTCEEEETTCTTTHHHHHHHHT-T-------------CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHH
T ss_pred hhCCCeEEEecCCCCHHHHHHHHC-C-------------CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHH
Confidence 358899999999999999999986 3 3689999999831 233 7899999998753
Q ss_pred hHHHHHhhcCCCCccEEeeCCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
. .+.. .+.+||+|++|.+.
T Consensus 281 ~--~~~~--~~~~fD~Vi~dpP~ 299 (396)
T 2as0_A 281 E--KLQK--KGEKFDIVVLDPPA 299 (396)
T ss_dssp H--HHHH--TTCCEEEEEECCCC
T ss_pred H--HHHh--hCCCCCEEEECCCC
Confidence 2 1111 24589999999653
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.23 E-value=2.9e-07 Score=75.81 Aligned_cols=69 Identities=20% Similarity=0.111 Sum_probs=52.6
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC-------CC-----------CCCC-eeEEec
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP-------MA-----------PIEG-VIQVQG 100 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~-------~~-----------~~~~-v~~i~g 100 (179)
.++.+|||+|||+|..+..++.+ + ++|+|+|+++ .. .+.+ ++++++
T Consensus 82 ~~~~~VLDlgcG~G~~a~~lA~~-g--------------~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~ 146 (258)
T 2r6z_A 82 TAHPTVWDATAGLGRDSFVLASL-G--------------LTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFG 146 (258)
T ss_dssp GGCCCEEETTCTTCHHHHHHHHT-T--------------CCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEES
T ss_pred CCcCeEEEeeCccCHHHHHHHHh-C--------------CEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEEC
Confidence 56789999999999999999986 2 6899999999 21 1224 899999
Q ss_pred cccchhhHHHHHhhcCC--CCccEEeeCCCC
Q 030299 101 DITNARTAEVVIRHFDG--CKADLVVCDGAP 129 (179)
Q Consensus 101 Di~~~~~~~~l~~~~~~--~~~D~VlsD~~~ 129 (179)
|+.+... .+++ ..||+|++|...
T Consensus 147 d~~~~l~------~~~~~~~~fD~V~~dP~~ 171 (258)
T 2r6z_A 147 NAAEQMP------ALVKTQGKPDIVYLDPMY 171 (258)
T ss_dssp CHHHHHH------HHHHHHCCCSEEEECCCC
T ss_pred CHHHHHH------hhhccCCCccEEEECCCC
Confidence 9887421 1222 579999999764
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.23 E-value=3e-06 Score=71.25 Aligned_cols=78 Identities=22% Similarity=0.345 Sum_probs=56.6
Q ss_pred hHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CC-CCeeEEe
Q 030299 31 QIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PI-EGVIQVQ 99 (179)
Q Consensus 31 eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~-~~v~~i~ 99 (179)
++.+.+++-+++.+|||+|||+|.++..++++.+ ..+++++|+..+. +. .+++++.
T Consensus 169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-------------~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~ 235 (352)
T 3mcz_A 169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHP-------------QLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFE 235 (352)
T ss_dssp HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCT-------------TCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEE
T ss_pred HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCC-------------CCeEEEEECHHHHHHHHHHHHhcCCCCceEEEe
Confidence 3444444323388999999999999999999875 5799999994331 12 3699999
Q ss_pred ccccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 100 GDITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 100 gDi~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
+|+++.+. +...+||+|++...
T Consensus 236 ~d~~~~~~-------~~~~~~D~v~~~~v 257 (352)
T 3mcz_A 236 KNLLDARN-------FEGGAADVVMLNDC 257 (352)
T ss_dssp CCTTCGGG-------GTTCCEEEEEEESC
T ss_pred CCcccCcc-------cCCCCccEEEEecc
Confidence 99998642 12356999998543
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=1.2e-06 Score=72.70 Aligned_cols=71 Identities=15% Similarity=0.136 Sum_probs=51.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------------------CCCCeeEEecc
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------------PIEGVIQVQGD 101 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------------------~~~~v~~i~gD 101 (179)
+++.+|||||||+|.++..+++. + ...|+|+|+++.. ...++.++++|
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~-~-------------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D 98 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKG-R-------------INKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITAD 98 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHT-T-------------CSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECC
T ss_pred CCCCEEEEECCCCcHHHHHHHhc-C-------------CCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEec
Confidence 57889999999999999999874 2 4799999999831 12378899999
Q ss_pred ccchhhHHHHHhhcC--CCCccEEeeCCC
Q 030299 102 ITNARTAEVVIRHFD--GCKADLVVCDGA 128 (179)
Q Consensus 102 i~~~~~~~~l~~~~~--~~~~D~VlsD~~ 128 (179)
+.+.+.. ..++ +++||+|++..+
T Consensus 99 ~~~~~~~----~~~~~~~~~fD~V~~~~~ 123 (313)
T 3bgv_A 99 SSKELLI----DKFRDPQMCFDICSCQFV 123 (313)
T ss_dssp TTTSCST----TTCSSTTCCEEEEEEETC
T ss_pred ccccchh----hhcccCCCCEEEEEEecc
Confidence 9886410 0122 348999999654
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.22 E-value=3.2e-06 Score=70.30 Aligned_cols=76 Identities=16% Similarity=0.180 Sum_probs=56.3
Q ss_pred hHHHHhCC-CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CC-CCeeEE
Q 030299 31 QIDEEFNI-FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PI-EGVIQV 98 (179)
Q Consensus 31 eid~~~~l-l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~-~~v~~i 98 (179)
++.+.+.+ +.++.+|||+|||+|.++..++++.+ ..+++++|++.+. .+ .+++++
T Consensus 154 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-------------~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~ 220 (335)
T 2r3s_A 154 LIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNP-------------NAEIFGVDWASVLEVAKENARIQGVASRYHTI 220 (335)
T ss_dssp HHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCT-------------TCEEEEEECHHHHHHHHHHHHHHTCGGGEEEE
T ss_pred HHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCC-------------CCeEEEEecHHHHHHHHHHHHhcCCCcceEEE
Confidence 34444543 26778999999999999999999875 4799999998431 12 359999
Q ss_pred eccccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 99 QGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 99 ~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
.+|+++.+ +++ +||+|++...
T Consensus 221 ~~d~~~~~--------~~~-~~D~v~~~~~ 241 (335)
T 2r3s_A 221 AGSAFEVD--------YGN-DYDLVLLPNF 241 (335)
T ss_dssp ESCTTTSC--------CCS-CEEEEEEESC
T ss_pred ecccccCC--------CCC-CCcEEEEcch
Confidence 99998753 233 4999998543
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=98.21 E-value=8.2e-07 Score=71.39 Aligned_cols=35 Identities=29% Similarity=0.401 Sum_probs=30.8
Q ss_pred CCCEEEEEccCCChHHHHHHHH--hCCCCCCCCCCCCCCCCeEEEEeCCC
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRK--LYLPAKLSPDSREGDLPLIVAIDLQP 88 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~--~~~~~~~~~~~~~~~~~~VvavD~~~ 88 (179)
++.+|||+|||+|.++..++++ .+ ...|+|+|+++
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~-------------~~~v~gvDis~ 87 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRS-------------LRQVIASDVDP 87 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGG-------------EEEEEEEESCH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccC-------------CCeEEEEECCH
Confidence 5679999999999999999987 33 36899999998
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=2.9e-06 Score=71.75 Aligned_cols=65 Identities=20% Similarity=0.374 Sum_probs=51.6
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC-C----CCCCCeeEEeccccchhhHHHHHh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP-M----APIEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~-~----~~~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
+.++.+|||||||+|.++..++++.+ ..+++++|+ | + ...++++++.+|+++.
T Consensus 186 ~~~~~~vlDvG~G~G~~~~~l~~~~p-------------~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~-------- 243 (352)
T 1fp2_A 186 FDGLESIVDVGGGTGTTAKIICETFP-------------KLKCIVFDR-PQVVENLSGSNNLTYVGGDMFTS-------- 243 (352)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHHCT-------------TCEEEEEEC-HHHHTTCCCBTTEEEEECCTTTC--------
T ss_pred cccCceEEEeCCCccHHHHHHHHHCC-------------CCeEEEeeC-HHHHhhcccCCCcEEEeccccCC--------
Confidence 35678999999999999999999875 478999999 5 2 2346799999999762
Q ss_pred hcCCCCccEEeeCCC
Q 030299 114 HFDGCKADLVVCDGA 128 (179)
Q Consensus 114 ~~~~~~~D~VlsD~~ 128 (179)
++ .||+|++...
T Consensus 244 -~p--~~D~v~~~~~ 255 (352)
T 1fp2_A 244 -IP--NADAVLLKYI 255 (352)
T ss_dssp -CC--CCSEEEEESC
T ss_pred -CC--CccEEEeehh
Confidence 23 3899887543
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.20 E-value=2.2e-06 Score=76.48 Aligned_cols=66 Identities=17% Similarity=0.273 Sum_probs=52.7
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CC-CCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PI-EGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~-~~v~~i~gDi~~~~~~ 108 (179)
.++.+|||||||+|.++..+++. + ..+|+|+|++++. .+ .+++++++|+.+.+
T Consensus 157 ~~~~~VLDiGcGtG~la~~la~~-~-------------~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~-- 220 (480)
T 3b3j_A 157 FKDKIVLDVGCGSGILSFFAAQA-G-------------ARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVS-- 220 (480)
T ss_dssp TTTCEEEEESCSTTHHHHHHHHT-T-------------CSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCC--
T ss_pred cCCCEEEEecCcccHHHHHHHHc-C-------------CCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCc--
Confidence 46789999999999999998874 3 4699999999841 22 57999999998853
Q ss_pred HHHHhhcCCCCccEEeeCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~ 128 (179)
++ ++||+|+++..
T Consensus 221 ------~~-~~fD~Ivs~~~ 233 (480)
T 3b3j_A 221 ------LP-EQVDIIISEPM 233 (480)
T ss_dssp ------CS-SCEEEEECCCC
T ss_pred ------cC-CCeEEEEEeCc
Confidence 23 47999999753
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=6.8e-06 Score=69.50 Aligned_cols=66 Identities=18% Similarity=0.229 Sum_probs=51.9
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCC-CCeeEEeccccchh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------API-EGVIQVQGDITNAR 106 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~-~~v~~i~gDi~~~~ 106 (179)
++++.+|||+|||+|.++..++++.+ ...++++|+ +. ..+ .+++++.+|+++.
T Consensus 180 ~~~~~~vlDvG~G~G~~~~~l~~~~~-------------~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~- 244 (374)
T 1qzz_A 180 WSAVRHVLDVGGGNGGMLAAIALRAP-------------HLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP- 244 (374)
T ss_dssp CTTCCEEEEETCTTSHHHHHHHHHCT-------------TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC-
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHCC-------------CCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCc-
Confidence 36788999999999999999999875 579999999 62 112 3799999999863
Q ss_pred hHHHHHhhcCCCCccEEeeCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
++. .||+|++...
T Consensus 245 --------~~~-~~D~v~~~~v 257 (374)
T 1qzz_A 245 --------LPV-TADVVLLSFV 257 (374)
T ss_dssp --------CSC-CEEEEEEESC
T ss_pred --------CCC-CCCEEEEecc
Confidence 232 4999998654
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.18 E-value=7.3e-07 Score=78.35 Aligned_cols=73 Identities=19% Similarity=0.128 Sum_probs=54.5
Q ss_pred CCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-------------CCCCeeEEeccccc
Q 030299 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------------PIEGVIQVQGDITN 104 (179)
Q Consensus 38 ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-------------~~~~v~~i~gDi~~ 104 (179)
++++|.+|||||||+|..+..++.. ..+|+|+|+++.. ...+++++++|+.+
T Consensus 90 ~l~~g~~VLDLgcG~G~~al~LA~~---------------g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~ 154 (410)
T 3ll7_A 90 FIREGTKVVDLTGGLGIDFIALMSK---------------ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKE 154 (410)
T ss_dssp GSCTTCEEEESSCSSSHHHHHHHTT---------------CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGG
T ss_pred hcCCCCEEEEeCCCchHHHHHHHhc---------------CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHH
Confidence 3456899999999999999988765 3699999999831 23568999999988
Q ss_pred hhhHHHHHhhcCCCCccEEeeCCCCCC
Q 030299 105 ARTAEVVIRHFDGCKADLVVCDGAPDV 131 (179)
Q Consensus 105 ~~~~~~l~~~~~~~~~D~VlsD~~~~~ 131 (179)
.-.. +.+.+||+|++|.+-..
T Consensus 155 ~L~~------~~~~~fDvV~lDPPrr~ 175 (410)
T 3ll7_A 155 YLPL------IKTFHPDYIYVDPARRS 175 (410)
T ss_dssp SHHH------HHHHCCSEEEECCEEC-
T ss_pred hhhh------ccCCCceEEEECCCCcC
Confidence 4210 11247999999976443
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=3.1e-06 Score=69.55 Aligned_cols=78 Identities=9% Similarity=0.030 Sum_probs=45.1
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeE--EEEeCCCC----------C--CCCCeeEE--ecccc
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLI--VAIDLQPM----------A--PIEGVIQV--QGDIT 103 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~V--vavD~~~~----------~--~~~~v~~i--~gDi~ 103 (179)
+++.+|||||||+|..+..++..+... .+...| +|+|+++. . .++++.+. ++|+.
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~---------~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~ 121 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQ---------YPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSS 121 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHH---------STTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhh---------CCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchh
Confidence 467899999999998887554433100 013544 99999972 0 23455443 44443
Q ss_pred chhhHHHHHhhcCCCCccEEeeCCC
Q 030299 104 NARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 104 ~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
+.+ ......+++++||+|++...
T Consensus 122 ~~~--~~~~~~~~~~~fD~V~~~~~ 144 (292)
T 2aot_A 122 EYQ--SRMLEKKELQKWDFIHMIQM 144 (292)
T ss_dssp HHH--HHHHTTTCCCCEEEEEEESC
T ss_pred hhh--hhhccccCCCceeEEEEeee
Confidence 321 11111134578999998654
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.17 E-value=5.1e-06 Score=68.59 Aligned_cols=70 Identities=10% Similarity=0.029 Sum_probs=53.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-------------C--CCCeeEEeccccc
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------------P--IEGVIQVQGDITN 104 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-------------~--~~~v~~i~gDi~~ 104 (179)
.++.+|||||||.|+.+..+++..+ ..+|++||+++.. . .++++++.+|..+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~-------------~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~ 140 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPS-------------VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFM 140 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTT-------------CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHH
T ss_pred CCCCEEEEECCchHHHHHHHHhCCC-------------CceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHH
Confidence 3568999999999999999987643 4799999999830 1 2579999999876
Q ss_pred hhhHHHHHhhcCCCCccEEeeCCCC
Q 030299 105 ARTAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 105 ~~~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
.- .. .+++||+|++|...
T Consensus 141 ~l------~~-~~~~fD~Ii~d~~~ 158 (275)
T 1iy9_A 141 HI------AK-SENQYDVIMVDSTE 158 (275)
T ss_dssp HH------HT-CCSCEEEEEESCSS
T ss_pred HH------hh-CCCCeeEEEECCCC
Confidence 31 11 24689999999753
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=1.8e-06 Score=71.38 Aligned_cols=68 Identities=13% Similarity=0.149 Sum_probs=52.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC--------C-------------CCCCeeEE
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM--------A-------------PIEGVIQV 98 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~--------~-------------~~~~v~~i 98 (179)
.++.+|||||||+|+.+..+++. + ..+|+++|+++. . ..++++++
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~-~-------------~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~ 139 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH-D-------------VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLT 139 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-C-------------CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC-C-------------CCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEE
Confidence 45789999999999999999887 5 479999999972 1 12578899
Q ss_pred eccccchhhHHHHHhhcCCCCccEEeeCCCC
Q 030299 99 QGDITNARTAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 99 ~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
.+|..+.. .. +++||+|++|...
T Consensus 140 ~~D~~~~l------~~--~~~fD~Ii~d~~~ 162 (281)
T 1mjf_A 140 IGDGFEFI------KN--NRGFDVIIADSTD 162 (281)
T ss_dssp ESCHHHHH------HH--CCCEEEEEEECCC
T ss_pred ECchHHHh------cc--cCCeeEEEECCCC
Confidence 99986531 11 3589999999753
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.17 E-value=3.3e-06 Score=72.45 Aligned_cols=69 Identities=16% Similarity=0.032 Sum_probs=52.9
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccc-hhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITN-ART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~-~~~ 107 (179)
.++.+||||| |+|.++..++.+.+ ..+|+|+|+++.. .+.+++++++|+.+ .+.
T Consensus 171 ~~~~~VLDlG-G~G~~~~~la~~~~-------------~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~ 236 (373)
T 2qm3_A 171 LENKDIFVLG-DDDLTSIALMLSGL-------------PKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPD 236 (373)
T ss_dssp STTCEEEEES-CTTCHHHHHHHHTC-------------CSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCT
T ss_pred CCCCEEEEEC-CCCHHHHHHHHhCC-------------CCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchh
Confidence 3678999999 99999999987643 4799999999731 23479999999988 321
Q ss_pred HHHHHhhcCCCCccEEeeCCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
..+..||+|++|.+.
T Consensus 237 -------~~~~~fD~Vi~~~p~ 251 (373)
T 2qm3_A 237 -------YALHKFDTFITDPPE 251 (373)
T ss_dssp -------TTSSCBSEEEECCCS
T ss_pred -------hccCCccEEEECCCC
Confidence 013579999999754
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=2.3e-06 Score=72.61 Aligned_cols=64 Identities=25% Similarity=0.350 Sum_probs=51.9
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNAR 106 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~ 106 (179)
+.++.+|||+|||+|.++.. +. + ...|+|+|+++.. .+ .+++++++|+.+..
T Consensus 193 ~~~~~~VLDlg~G~G~~~l~-a~--~-------------~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~ 256 (336)
T 2yx1_A 193 VSLNDVVVDMFAGVGPFSIA-CK--N-------------AKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD 256 (336)
T ss_dssp CCTTCEEEETTCTTSHHHHH-TT--T-------------SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC
T ss_pred cCCCCEEEEccCccCHHHHh-cc--C-------------CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc
Confidence 46889999999999999999 76 3 4799999999831 23 47999999998852
Q ss_pred hHHHHHhhcCCCCccEEeeCCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
..||+|++|.+.
T Consensus 257 -----------~~fD~Vi~dpP~ 268 (336)
T 2yx1_A 257 -----------VKGNRVIMNLPK 268 (336)
T ss_dssp -----------CCEEEEEECCTT
T ss_pred -----------CCCcEEEECCcH
Confidence 579999998643
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.15 E-value=7.6e-06 Score=68.67 Aligned_cols=83 Identities=13% Similarity=0.149 Sum_probs=61.6
Q ss_pred HhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----CC--CCeeEEeccc
Q 030299 30 LQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----PI--EGVIQVQGDI 102 (179)
Q Consensus 30 ~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----~~--~~v~~i~gDi 102 (179)
.|+.+... ++++..+||.+||.||.|..++++ + ++|+|+|.+|.. .+ ++++++++|+
T Consensus 12 ~e~le~L~-~~~gg~~VD~T~G~GGHS~~il~~-~--------------g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f 75 (285)
T 1wg8_A 12 QEALDLLA-VRPGGVYVDATLGGAGHARGILER-G--------------GRVIGLDQDPEAVARAKGLHLPGLTVVQGNF 75 (285)
T ss_dssp HHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT-T--------------CEEEEEESCHHHHHHHHHTCCTTEEEEESCG
T ss_pred HHHHHhhC-CCCCCEEEEeCCCCcHHHHHHHHC-C--------------CEEEEEeCCHHHHHHHHhhccCCEEEEECCc
Confidence 34444444 378889999999999999999997 3 799999999931 02 5799999999
Q ss_pred cchhhHHHHHhhcCCCCccEEeeCCCCCC
Q 030299 103 TNARTAEVVIRHFDGCKADLVVCDGAPDV 131 (179)
Q Consensus 103 ~~~~~~~~l~~~~~~~~~D~VlsD~~~~~ 131 (179)
.+... +.+..+..+||.|+.|.+.+.
T Consensus 76 ~~l~~---~L~~~g~~~vDgIL~DLGvSS 101 (285)
T 1wg8_A 76 RHLKR---HLAALGVERVDGILADLGVSS 101 (285)
T ss_dssp GGHHH---HHHHTTCSCEEEEEEECSCCH
T ss_pred chHHH---HHHHcCCCCcCEEEeCCcccc
Confidence 98653 222333357999999886443
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=4.1e-06 Score=73.58 Aligned_cols=64 Identities=13% Similarity=0.157 Sum_probs=52.0
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART 107 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~ 107 (179)
+.++.+|||+|||+|.++..+++. ...|+|+|+++.. .+. ++++++|+.+..
T Consensus 288 ~~~~~~VLDlgcG~G~~sl~la~~---------------~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~- 350 (425)
T 2jjq_A 288 LVEGEKILDMYSGVGTFGIYLAKR---------------GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVS- 350 (425)
T ss_dssp HCCSSEEEEETCTTTHHHHHHHHT---------------TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCC-
T ss_pred cCCCCEEEEeeccchHHHHHHHHc---------------CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcC-
Confidence 578899999999999999999885 2689999999831 234 889999998852
Q ss_pred HHHHHhhcCCCCccEEeeCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~ 128 (179)
+. .||+|++|.+
T Consensus 351 --------~~-~fD~Vv~dPP 362 (425)
T 2jjq_A 351 --------VK-GFDTVIVDPP 362 (425)
T ss_dssp --------CT-TCSEEEECCC
T ss_pred --------cc-CCCEEEEcCC
Confidence 22 7999999864
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=1.9e-06 Score=72.54 Aligned_cols=70 Identities=16% Similarity=0.107 Sum_probs=54.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CC-------CCCeeEEecccc
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------AP-------IEGVIQVQGDIT 103 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~~-------~~~v~~i~gDi~ 103 (179)
.++.+|||||||+|+++..+++..+ ..+|+++|+++. .. .++++++.+|+.
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~-------------~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~ 142 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPT-------------VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDAR 142 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTT-------------CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHH
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCC-------------CCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHH
Confidence 4568999999999999999988643 479999999983 11 257999999987
Q ss_pred chhhHHHHHhhcCCCCccEEeeCCCC
Q 030299 104 NARTAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 104 ~~~~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
+... . .+++||+|++|...
T Consensus 143 ~~l~------~-~~~~fD~Ii~d~~~ 161 (314)
T 1uir_A 143 AYLE------R-TEERYDVVIIDLTD 161 (314)
T ss_dssp HHHH------H-CCCCEEEEEEECCC
T ss_pred HHHH------h-cCCCccEEEECCCC
Confidence 7411 1 24689999999754
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=1.9e-06 Score=72.42 Aligned_cols=69 Identities=10% Similarity=0.120 Sum_probs=53.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------------CCCCeeEEeccccc
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------PIEGVIQVQGDITN 104 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------------~~~~v~~i~gDi~~ 104 (179)
.++.+|||||||+|..+..++++.+ ..+|+++|+++.. ..++++++.+|..+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~-------------~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~ 160 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPS-------------VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFE 160 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTT-------------CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHcCC-------------CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHH
Confidence 4568999999999999999987643 4799999999831 13578999999876
Q ss_pred hhhHHHHHhhcCCCCccEEeeCCC
Q 030299 105 ARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 105 ~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
.- . ..+++||+|++|..
T Consensus 161 ~l------~-~~~~~fD~Ii~d~~ 177 (304)
T 2o07_A 161 FM------K-QNQDAFDVIITDSS 177 (304)
T ss_dssp HH------H-TCSSCEEEEEEECC
T ss_pred HH------h-hCCCCceEEEECCC
Confidence 31 1 12468999999875
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.15 E-value=2e-06 Score=68.71 Aligned_cols=73 Identities=22% Similarity=0.211 Sum_probs=54.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~~ 107 (179)
.++.+|||+|||+|.++..++..++. .++|+++|+++.. .. .+++++.+|+.+..
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~~------------~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l- 137 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLPP------------DGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATL- 137 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSCT------------TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHH-
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCCC------------CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH-
Confidence 46789999999999999999988752 5799999999831 12 35889999986531
Q ss_pred HHHHHhhcCC--CCccEEeeCCC
Q 030299 108 AEVVIRHFDG--CKADLVVCDGA 128 (179)
Q Consensus 108 ~~~l~~~~~~--~~~D~VlsD~~ 128 (179)
.++. ..+ ++||+|++|+.
T Consensus 138 -~~l~--~~~~~~~fD~V~~d~~ 157 (232)
T 3cbg_A 138 -EQLT--QGKPLPEFDLIFIDAD 157 (232)
T ss_dssp -HHHH--TSSSCCCEEEEEECSC
T ss_pred -HHHH--hcCCCCCcCEEEECCC
Confidence 1111 112 57999999975
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=8.1e-06 Score=69.79 Aligned_cols=53 Identities=25% Similarity=0.438 Sum_probs=44.2
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC----CCCCCeeEEeccccc
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM----APIEGVIQVQGDITN 104 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~----~~~~~v~~i~gDi~~ 104 (179)
+.++.+|||||||+|.++..++++.+ ..+++++|+..+ ...++++++.+|+++
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~p-------------~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~ 257 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKYP-------------SINAINFDLPHVIQDAPAFSGVEHLGGDMFD 257 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCT-------------TCEEEEEECHHHHTTCCCCTTEEEEECCTTT
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhCC-------------CCEEEEEehHHHHHhhhhcCCCEEEecCCCC
Confidence 45678999999999999999999876 578999999332 234689999999987
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.12 E-value=2.8e-06 Score=72.85 Aligned_cols=70 Identities=13% Similarity=0.243 Sum_probs=50.9
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~~~ 110 (179)
+.+|||||||+|.++..++.. ..+|+|+|+++.. .+.+++++.+|+.+... .
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~---------------~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~--~ 276 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARN---------------FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQ--A 276 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGG---------------SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHH--H
T ss_pred CCEEEEccCCCCHHHHHHHhc---------------CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHH--H
Confidence 678999999999999998874 3689999999831 24689999999977421 1
Q ss_pred HHhh----------cCCCCccEEeeCCC
Q 030299 111 VIRH----------FDGCKADLVVCDGA 128 (179)
Q Consensus 111 l~~~----------~~~~~~D~VlsD~~ 128 (179)
+... +.+..||+|+.|.+
T Consensus 277 ~~~~~~~~~l~~~~~~~~~fD~Vv~dPP 304 (369)
T 3bt7_A 277 MNGVREFNRLQGIDLKSYQCETIFVDPP 304 (369)
T ss_dssp HSSCCCCTTGGGSCGGGCCEEEEEECCC
T ss_pred HhhccccccccccccccCCCCEEEECcC
Confidence 1100 00137999999954
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=8.4e-07 Score=70.87 Aligned_cols=71 Identities=13% Similarity=0.122 Sum_probs=50.6
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------CCCC-----------------
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIEG----------------- 94 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------~~~~----------------- 94 (179)
.++.+|||||||+|.++..++... ...|+|+|+++.. ...+
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~--------------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACES--------------FTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEG 120 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGT--------------EEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTT
T ss_pred cCCCEEEEECCCccHHHHHHhhcc--------------cCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccc
Confidence 467899999999999999887652 1489999999831 1122
Q ss_pred ---------------e-eEEeccccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 95 ---------------V-IQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 95 ---------------v-~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
+ .++++|+.+.... .....+.||+|++...
T Consensus 121 ~~~~~~~~~~~l~~~v~~~~~~d~~~~~~~----~~~~~~~fD~v~~~~~ 166 (265)
T 2i62_A 121 NRMKGPEKEEKLRRAIKQVLKCDVTQSQPL----GGVSLPPADCLLSTLC 166 (265)
T ss_dssp TCSCHHHHHHHHHHHEEEEEECCTTSSSTT----TTCCCCCEEEEEEESC
T ss_pred cccchHHHHHHhhhhheeEEEeeeccCCCC----CccccCCccEEEEhhh
Confidence 7 8899999886421 0012268999998653
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=1.2e-05 Score=68.00 Aligned_cols=71 Identities=23% Similarity=0.303 Sum_probs=53.4
Q ss_pred HHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCC-CeeEEe
Q 030299 32 IDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQ 99 (179)
Q Consensus 32 id~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~-~v~~i~ 99 (179)
+.+.+. +.++.+|||+|||+|.++..++++.+ ..+++++|+ |.. ..+ +++++.
T Consensus 182 l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p-------------~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~ 246 (359)
T 1x19_A 182 LLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFP-------------ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIA 246 (359)
T ss_dssp HHHHCC-CTTCCEEEEESCTTCHHHHHHHHHCT-------------TCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEE
T ss_pred HHHhcC-CCCCCEEEEECCcccHHHHHHHHHCC-------------CCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEe
Confidence 334444 46788999999999999999999875 579999999 631 233 499999
Q ss_pred ccccchhhHHHHHhhcCCCCccEEeeCC
Q 030299 100 GDITNARTAEVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 100 gDi~~~~~~~~l~~~~~~~~~D~VlsD~ 127 (179)
+|+++.+ ++ ..|+|++..
T Consensus 247 ~d~~~~~--------~~--~~D~v~~~~ 264 (359)
T 1x19_A 247 VDIYKES--------YP--EADAVLFCR 264 (359)
T ss_dssp CCTTTSC--------CC--CCSEEEEES
T ss_pred CccccCC--------CC--CCCEEEEec
Confidence 9998753 23 238888754
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.10 E-value=1.6e-06 Score=73.37 Aligned_cols=67 Identities=12% Similarity=0.070 Sum_probs=51.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~ 109 (179)
.++.+|||||||+|.++..++++.+ ..+|+++|+++.. ....+.++.+|+.+.
T Consensus 195 ~~~~~VLDlGcG~G~~~~~la~~~~-------------~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~---- 257 (343)
T 2pjd_A 195 HTKGKVLDVGCGAGVLSVAFARHSP-------------KIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSE---- 257 (343)
T ss_dssp TCCSBCCBTTCTTSHHHHHHHHHCT-------------TCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTT----
T ss_pred CCCCeEEEecCccCHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEcccccc----
Confidence 3567999999999999999998854 4699999999841 112356788888763
Q ss_pred HHHhhcCCCCccEEeeCCCC
Q 030299 110 VVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~~ 129 (179)
.+++||+|+++...
T Consensus 258 ------~~~~fD~Iv~~~~~ 271 (343)
T 2pjd_A 258 ------VKGRFDMIISNPPF 271 (343)
T ss_dssp ------CCSCEEEEEECCCC
T ss_pred ------ccCCeeEEEECCCc
Confidence 24589999998765
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.10 E-value=4.7e-06 Score=70.41 Aligned_cols=69 Identities=13% Similarity=0.128 Sum_probs=53.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CC------CCCeeEEeccccc
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------AP------IEGVIQVQGDITN 104 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~~------~~~v~~i~gDi~~ 104 (179)
.++.+|||||||+|+.+..+++..+ ..+|+++|+++. .. .++++++.+|+.+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~-------------~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~ 173 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHES-------------VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFE 173 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTT-------------CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHH
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCC-------------CCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHH
Confidence 4567999999999999999987643 579999999983 11 2578999999876
Q ss_pred hhhHHHHHhhcCCCCccEEeeCCC
Q 030299 105 ARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 105 ~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
... . .+++||+|++|..
T Consensus 174 ~l~------~-~~~~fD~Ii~d~~ 190 (314)
T 2b2c_A 174 FLK------N-HKNEFDVIITDSS 190 (314)
T ss_dssp HHH------H-CTTCEEEEEECCC
T ss_pred HHH------h-cCCCceEEEEcCC
Confidence 311 1 3468999999974
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=1.4e-05 Score=68.24 Aligned_cols=70 Identities=23% Similarity=0.310 Sum_probs=52.7
Q ss_pred HHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC----CCCCCeeEEeccccchhhHH
Q 030299 34 EEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM----APIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 34 ~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~----~~~~~v~~i~gDi~~~~~~~ 109 (179)
+.+.-+.+..+|||||||+|.++..++++.+ ..+++++|+..+ ...++++++.+|+++ +
T Consensus 194 ~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-------------~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~-~--- 256 (364)
T 3p9c_A 194 ELYHGFEGLGTLVDVGGGVGATVAAIAAHYP-------------TIKGVNFDLPHVISEAPQFPGVTHVGGDMFK-E--- 256 (364)
T ss_dssp HHCCTTTTCSEEEEETCTTSHHHHHHHHHCT-------------TCEEEEEECHHHHTTCCCCTTEEEEECCTTT-C---
T ss_pred HhcccccCCCEEEEeCCCCCHHHHHHHHHCC-------------CCeEEEecCHHHHHhhhhcCCeEEEeCCcCC-C---
Confidence 3343246788999999999999999999876 578999999432 234689999999987 3
Q ss_pred HHHhhcCCCCccEEeeCC
Q 030299 110 VVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~ 127 (179)
++. . |+|++..
T Consensus 257 -----~p~-~-D~v~~~~ 267 (364)
T 3p9c_A 257 -----VPS-G-DTILMKW 267 (364)
T ss_dssp -----CCC-C-SEEEEES
T ss_pred -----CCC-C-CEEEehH
Confidence 233 2 8877643
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=98.10 E-value=1.1e-05 Score=66.45 Aligned_cols=88 Identities=19% Similarity=0.001 Sum_probs=55.4
Q ss_pred hhhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeC-CCCC------------
Q 030299 24 RSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDL-QPMA------------ 90 (179)
Q Consensus 24 Raa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~-~~~~------------ 90 (179)
+++..|.+......-+.++.+|||||||+|.++..++.. + ..+|+|+|+ ++..
T Consensus 62 ~~~~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~-~-------------~~~v~~~D~s~~~~~~~a~~n~~~N~ 127 (281)
T 3bzb_A 62 SGARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLA-G-------------ADQVVATDYPDPEILNSLESNIREHT 127 (281)
T ss_dssp CHHHHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHT-T-------------CSEEEEEECSCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHc-C-------------CCEEEEEeCCCHHHHHHHHHHHHHhh
Confidence 345556655444332357889999999999999988775 3 258999999 6620
Q ss_pred -C---C-----CCeeEEeccccchhhHHHHHhhcCCCCccEEee-CC
Q 030299 91 -P---I-----EGVIQVQGDITNARTAEVVIRHFDGCKADLVVC-DG 127 (179)
Q Consensus 91 -~---~-----~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~Vls-D~ 127 (179)
. + .++.++..|..+.. ..+...+.+.+||+|++ |.
T Consensus 128 ~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~fD~Ii~~dv 172 (281)
T 3bzb_A 128 ANSCSSETVKRASPKVVPYRWGDSP--DSLQRCTGLQRFQVVLLADL 172 (281)
T ss_dssp C----------CCCEEEECCTTSCT--HHHHHHHSCSSBSEEEEESC
T ss_pred hhhcccccCCCCCeEEEEecCCCcc--HHHHhhccCCCCCEEEEeCc
Confidence 1 1 25667766655421 11221123468999987 54
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.8e-06 Score=68.99 Aligned_cols=65 Identities=9% Similarity=-0.071 Sum_probs=47.6
Q ss_pred CCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCC-CeeEEeccccch
Q 030299 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNA 105 (179)
Q Consensus 38 ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~-~v~~i~gDi~~~ 105 (179)
.+.+..+|||||||+|..+..++...+ ..+|+|+|+++-. ... ++.+ +|..+.
T Consensus 46 ~l~~~~~VLDlGCG~GplAl~l~~~~p-------------~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~ 110 (200)
T 3fzg_A 46 NIKHVSSILDFGCGFNPLALYQWNENE-------------KIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESD 110 (200)
T ss_dssp HSCCCSEEEEETCTTHHHHHHHHCSSC-------------CCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHH
T ss_pred hcCCCCeEEEecCCCCHHHHHHHhcCC-------------CCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--eccccc
Confidence 467888999999999999999877654 5699999999831 123 3444 555432
Q ss_pred hhHHHHHhhcCCCCccEEeeC
Q 030299 106 RTAEVVIRHFDGCKADLVVCD 126 (179)
Q Consensus 106 ~~~~~l~~~~~~~~~D~VlsD 126 (179)
.+.++||+|++-
T Consensus 111 ---------~~~~~~DvVLa~ 122 (200)
T 3fzg_A 111 ---------VYKGTYDVVFLL 122 (200)
T ss_dssp ---------HTTSEEEEEEEE
T ss_pred ---------CCCCCcChhhHh
Confidence 245689999984
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.08 E-value=6e-06 Score=67.71 Aligned_cols=74 Identities=11% Similarity=0.015 Sum_probs=52.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC------C---CCCCeeEEeccccchhhHHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------A---PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~------~---~~~~v~~i~gDi~~~~~~~~ 110 (179)
.++++|||+|||+|..|. +. +.+ ..+|+|+|+++. + ..++++++++|+.+.+..+.
T Consensus 20 ~~~~~VLEIG~G~G~lt~-l~-~~~-------------~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~ 84 (252)
T 1qyr_A 20 QKGQAMVEIGPGLAALTE-PV-GER-------------LDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGEL 84 (252)
T ss_dssp CTTCCEEEECCTTTTTHH-HH-HTT-------------CSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHH
T ss_pred CCcCEEEEECCCCcHHHH-hh-hCC-------------CCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHh
Confidence 678899999999999999 64 422 234999999982 1 12489999999998653221
Q ss_pred HHhhcCCCCccEEeeCCCCCC
Q 030299 111 VIRHFDGCKADLVVCDGAPDV 131 (179)
Q Consensus 111 l~~~~~~~~~D~VlsD~~~~~ 131 (179)
... + ...|.|+++.+.+.
T Consensus 85 ~~~--~-~~~~~vvsNlPY~i 102 (252)
T 1qyr_A 85 AEK--M-GQPLRVFGNLPYNI 102 (252)
T ss_dssp HHH--H-TSCEEEEEECCTTT
T ss_pred hcc--c-CCceEEEECCCCCc
Confidence 100 1 24689999887644
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=98.08 E-value=5.7e-06 Score=69.91 Aligned_cols=71 Identities=18% Similarity=0.153 Sum_probs=53.7
Q ss_pred HHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------C-CCCeeEEeccc
Q 030299 32 IDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P-IEGVIQVQGDI 102 (179)
Q Consensus 32 id~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------~-~~~v~~i~gDi 102 (179)
+.+.+. +.++.+|||||||+|.++..++++.+ ..+++++|+.++. . ..+++++.+|+
T Consensus 176 ~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p-------------~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~ 241 (348)
T 3lst_A 176 LARAGD-FPATGTVADVGGGRGGFLLTVLREHP-------------GLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDF 241 (348)
T ss_dssp HHHHSC-CCSSEEEEEETCTTSHHHHHHHHHCT-------------TEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCT
T ss_pred HHHhCC-ccCCceEEEECCccCHHHHHHHHHCC-------------CCEEEEecCHHHhhcccccccCCCCCeEEEecCC
Confidence 344444 36788999999999999999999875 5789999986431 1 24699999999
Q ss_pred cchhhHHHHHhhcCCCCccEEeeCC
Q 030299 103 TNARTAEVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 103 ~~~~~~~~l~~~~~~~~~D~VlsD~ 127 (179)
++. ++ +||+|++..
T Consensus 242 ~~~---------~p--~~D~v~~~~ 255 (348)
T 3lst_A 242 LRE---------VP--HADVHVLKR 255 (348)
T ss_dssp TTC---------CC--CCSEEEEES
T ss_pred CCC---------CC--CCcEEEEeh
Confidence 842 34 789988754
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=2.2e-05 Score=66.14 Aligned_cols=66 Identities=18% Similarity=0.332 Sum_probs=51.2
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNAR 106 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~ 106 (179)
++++.+|||||||+|.++..++++.+ ...++++|+ +.. .+ .+++++.+|+++.
T Consensus 181 ~~~~~~vLDvG~G~G~~~~~l~~~~~-------------~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~- 245 (360)
T 1tw3_A 181 WTNVRHVLDVGGGKGGFAAAIARRAP-------------HVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP- 245 (360)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHCT-------------TCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC-
T ss_pred CccCcEEEEeCCcCcHHHHHHHHhCC-------------CCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCC-
Confidence 36788999999999999999999865 579999998 521 12 3799999999863
Q ss_pred hHHHHHhhcCCCCccEEeeCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
++. .||+|++...
T Consensus 246 --------~~~-~~D~v~~~~v 258 (360)
T 1tw3_A 246 --------LPR-KADAIILSFV 258 (360)
T ss_dssp --------CSS-CEEEEEEESC
T ss_pred --------CCC-CccEEEEccc
Confidence 232 4999888553
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.04 E-value=3.9e-06 Score=70.97 Aligned_cols=72 Identities=11% Similarity=0.018 Sum_probs=53.7
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
.++.+|||+|||+|+++..++++++.. .+....|+|+|+++.. .. ++.++++|..+..
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~--------~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-~~~i~~~D~l~~~-- 197 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELK--------GDVDVHASGVDVDDLLISLALVGADLQRQ-KMTLLHQDGLANL-- 197 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTT--------SSCEEEEEEEESCHHHHHHHHHHHHHHTC-CCEEEESCTTSCC--
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHh--------cCCCceEEEEECCHHHHHHHHHHHHhCCC-CceEEECCCCCcc--
Confidence 457899999999999999999887520 0012689999999831 12 5788899987642
Q ss_pred HHHHhhcCCCCccEEeeCCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~ 129 (179)
...+||+|+++.++
T Consensus 198 -------~~~~fD~Ii~NPPf 211 (344)
T 2f8l_A 198 -------LVDPVDVVISDLPV 211 (344)
T ss_dssp -------CCCCEEEEEEECCC
T ss_pred -------ccCCccEEEECCCC
Confidence 24689999999765
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=98.04 E-value=3.7e-07 Score=74.29 Aligned_cols=35 Identities=11% Similarity=0.149 Sum_probs=28.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~ 88 (179)
.+|.+|||||||||.++..++... ...|+|+|+++
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~~~~~--------------~~~v~g~D~s~ 88 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAACDS--------------FQDITLSDFTD 88 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGT--------------EEEEEEEESCH
T ss_pred CCCceEEEeCCCccHHHHHHHHhh--------------hcceeeccccH
Confidence 568899999999998887766442 24799999997
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.04 E-value=3.3e-05 Score=64.34 Aligned_cols=69 Identities=17% Similarity=0.206 Sum_probs=52.6
Q ss_pred HHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC-CC-----C------CCCeeEEec
Q 030299 33 DEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP-MA-----P------IEGVIQVQG 100 (179)
Q Consensus 33 d~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~-~~-----~------~~~v~~i~g 100 (179)
.+.+.+ .+ .+|||+|||+|.++..++++.+ ..+++++|+ | +. . ..+++++.+
T Consensus 161 ~~~~~~-~~-~~vlDvG~G~G~~~~~l~~~~p-------------~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~ 224 (334)
T 2ip2_A 161 PRLLDF-RG-RSFVDVGGGSGELTKAILQAEP-------------SARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGG 224 (334)
T ss_dssp HHHSCC-TT-CEEEEETCTTCHHHHHHHHHCT-------------TCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEES
T ss_pred HHhCCC-CC-CEEEEeCCCchHHHHHHHHHCC-------------CCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecC
Confidence 334443 45 8999999999999999999875 479999999 6 31 0 247999999
Q ss_pred cccchhhHHHHHhhcCCCCccEEeeCC
Q 030299 101 DITNARTAEVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 101 Di~~~~~~~~l~~~~~~~~~D~VlsD~ 127 (179)
|+++. ++ .+||+|++..
T Consensus 225 d~~~~---------~~-~~~D~v~~~~ 241 (334)
T 2ip2_A 225 DMLQE---------VP-SNGDIYLLSR 241 (334)
T ss_dssp CTTTC---------CC-SSCSEEEEES
T ss_pred CCCCC---------CC-CCCCEEEEch
Confidence 99873 23 4799999754
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=5.2e-06 Score=70.31 Aligned_cols=66 Identities=21% Similarity=0.282 Sum_probs=51.5
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC----CCCCCeeEEeccccchhhHHHHHhh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM----APIEGVIQVQGDITNARTAEVVIRH 114 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~----~~~~~v~~i~gDi~~~~~~~~l~~~ 114 (179)
+.++.+|||||||+|.++..++++.+ ..+++++|+..+ ...++++++.+|+++ +
T Consensus 191 ~~~~~~vlDvG~G~G~~~~~l~~~~p-------------~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~-------- 248 (358)
T 1zg3_A 191 FEGLESLVDVGGGTGGVTKLIHEIFP-------------HLKCTVFDQPQVVGNLTGNENLNFVGGDMFK-S-------- 248 (358)
T ss_dssp HHTCSEEEEETCTTSHHHHHHHHHCT-------------TSEEEEEECHHHHSSCCCCSSEEEEECCTTT-C--------
T ss_pred ccCCCEEEEECCCcCHHHHHHHHHCC-------------CCeEEEeccHHHHhhcccCCCcEEEeCccCC-C--------
Confidence 35678999999999999999999875 578999999443 224689999999987 3
Q ss_pred cCCCCccEEeeCCC
Q 030299 115 FDGCKADLVVCDGA 128 (179)
Q Consensus 115 ~~~~~~D~VlsD~~ 128 (179)
++ .+|+|++...
T Consensus 249 ~~--~~D~v~~~~v 260 (358)
T 1zg3_A 249 IP--SADAVLLKWV 260 (358)
T ss_dssp CC--CCSEEEEESC
T ss_pred CC--CceEEEEccc
Confidence 23 4888887543
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.02 E-value=9.9e-06 Score=62.03 Aligned_cols=81 Identities=21% Similarity=0.154 Sum_probs=55.4
Q ss_pred hCCcchhhhcHHhHHHHh--CCCCCCCEEEEEccCCC-hHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCe
Q 030299 19 EGWRARSAFKLLQIDEEF--NIFEGVKRVVDLCAAPG-SWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGV 95 (179)
Q Consensus 19 ~~~~sRaa~KL~eid~~~--~ll~~g~~VlDLgagpG-g~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~~~~v 95 (179)
.|+..| ++|+.|-...| +-.+++.+|||||||+| .-+.+|++.. +..|+|+|++|....
T Consensus 12 ~~~~~~-~~~m~e~LaeYI~~~~~~~~rVlEVG~G~g~~vA~~La~~~--------------g~~V~atDInp~Av~--- 73 (153)
T 2k4m_A 12 SGLVPR-GSHMWNDLAVYIIRCSGPGTRVVEVGAGRFLYVSDYIRKHS--------------KVDLVLTDIKPSHGG--- 73 (153)
T ss_dssp CCCCCC-CCHHHHHHHHHHHHHSCSSSEEEEETCTTCCHHHHHHHHHS--------------CCEEEEECSSCSSTT---
T ss_pred CCcccc-hhhHHHHHHHHHHhcCCCCCcEEEEccCCChHHHHHHHHhC--------------CCeEEEEECCccccc---
Confidence 344444 35665433333 11256779999999999 5999998754 368999999996532
Q ss_pred eEEeccccchhhHHHHHhhcCCCCccEEee
Q 030299 96 IQVQGDITNARTAEVVIRHFDGCKADLVVC 125 (179)
Q Consensus 96 ~~i~gDi~~~~~~~~l~~~~~~~~~D~Vls 125 (179)
+++.|++++... + -..+|+|-+
T Consensus 74 -~v~dDiF~P~~~--~-----Y~~~DLIYs 95 (153)
T 2k4m_A 74 -IVRDDITSPRME--I-----YRGAALIYS 95 (153)
T ss_dssp -EECCCSSSCCHH--H-----HTTEEEEEE
T ss_pred -eEEccCCCCccc--c-----cCCcCEEEE
Confidence 889999996521 1 137999944
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=5.4e-06 Score=71.84 Aligned_cols=67 Identities=13% Similarity=0.008 Sum_probs=52.2
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------------------------CCCC
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------------------------PIEG 94 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------------------------~~~~ 94 (179)
++.+|||+|||+|..+..++.+.+ ...|+++|+++.. .+.+
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~-------------~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~ 113 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETP-------------AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKT 113 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSS-------------CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSE
T ss_pred CCCEEEECCCchhHHHHHHHHhCC-------------CCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCc
Confidence 688999999999999999999875 3689999999831 2234
Q ss_pred eeEEeccccchhhHHHHHhhcCCCCccEEeeCC
Q 030299 95 VIQVQGDITNARTAEVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 95 v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~ 127 (179)
++++++|+.+... .. ...||+|+.|.
T Consensus 114 i~v~~~Da~~~~~------~~-~~~fD~I~lDP 139 (378)
T 2dul_A 114 IVINHDDANRLMA------ER-HRYFHFIDLDP 139 (378)
T ss_dssp EEEEESCHHHHHH------HS-TTCEEEEEECC
T ss_pred eEEEcCcHHHHHH------hc-cCCCCEEEeCC
Confidence 7888999877421 12 34799999985
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=1.6e-05 Score=67.82 Aligned_cols=70 Identities=17% Similarity=0.218 Sum_probs=53.8
Q ss_pred HHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-C----------C-CCCeeEEecc
Q 030299 34 EEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-A----------P-IEGVIQVQGD 101 (179)
Q Consensus 34 ~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-~----------~-~~~v~~i~gD 101 (179)
+.++ +.++.+|||+|||+|.++..++++.+ ..+++++|+ |. . . ..+++++.+|
T Consensus 196 ~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p-------------~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d 260 (369)
T 3gwz_A 196 AAYD-FSGAATAVDIGGGRGSLMAAVLDAFP-------------GLRGTLLER-PPVAEEARELLTGRGLADRCEILPGD 260 (369)
T ss_dssp HHSC-CTTCSEEEEETCTTSHHHHHHHHHCT-------------TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECC
T ss_pred HhCC-CccCcEEEEeCCCccHHHHHHHHHCC-------------CCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccC
Confidence 3443 36678999999999999999999865 579999999 62 0 1 2579999999
Q ss_pred ccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 102 ITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 102 i~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
+++. ++. +||+|++...
T Consensus 261 ~~~~---------~p~-~~D~v~~~~v 277 (369)
T 3gwz_A 261 FFET---------IPD-GADVYLIKHV 277 (369)
T ss_dssp TTTC---------CCS-SCSEEEEESC
T ss_pred CCCC---------CCC-CceEEEhhhh
Confidence 9843 344 7999988543
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.02 E-value=3.6e-06 Score=68.84 Aligned_cols=70 Identities=19% Similarity=0.166 Sum_probs=52.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC------C-CCCCeeEEeccccchhhHHHHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------A-PIEGVIQVQGDITNARTAEVVI 112 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~------~-~~~~v~~i~gDi~~~~~~~~l~ 112 (179)
.++++|||+|||+|..|..++++ + ..+|+|+|+++. + +..+++++++|+.+.+..
T Consensus 30 ~~~~~VLDiG~G~G~lt~~L~~~-~-------------~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~---- 91 (249)
T 3ftd_A 30 EEGNTVVEVGGGTGNLTKVLLQH-P-------------LKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFC---- 91 (249)
T ss_dssp CTTCEEEEEESCHHHHHHHHTTS-C-------------CSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGG----
T ss_pred CCcCEEEEEcCchHHHHHHHHHc-C-------------CCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChh----
Confidence 57889999999999999999876 2 369999999982 1 235789999999886531
Q ss_pred hhcCCCCccEEeeCCCCC
Q 030299 113 RHFDGCKADLVVCDGAPD 130 (179)
Q Consensus 113 ~~~~~~~~D~VlsD~~~~ 130 (179)
...+ . ..|+++.+.+
T Consensus 92 -~~~~-~-~~vv~NlPy~ 106 (249)
T 3ftd_A 92 -SLGK-E-LKVVGNLPYN 106 (249)
T ss_dssp -GSCS-S-EEEEEECCTT
T ss_pred -HccC-C-cEEEEECchh
Confidence 1111 3 3788887653
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=8.9e-06 Score=67.98 Aligned_cols=64 Identities=19% Similarity=0.089 Sum_probs=51.1
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC-CC----------C-CCCeeEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP-MA----------P-IEGVIQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~-~~----------~-~~~v~~i~gDi~~~~~ 107 (179)
.++.+|||+|||+|.++..++++.+ ..+++++|+ | +. . ..+++++.+|+++.
T Consensus 168 ~~~~~vlDvG~G~G~~~~~l~~~~p-------------~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-- 231 (332)
T 3i53_A 168 AALGHVVDVGGGSGGLLSALLTAHE-------------DLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDP-- 231 (332)
T ss_dssp GGGSEEEEETCTTSHHHHHHHHHCT-------------TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC--
T ss_pred CCCCEEEEeCCChhHHHHHHHHHCC-------------CCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCC--
Confidence 4568999999999999999999876 579999999 6 20 1 25799999999853
Q ss_pred HHHHHhhcCCCCccEEeeCC
Q 030299 108 AEVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~ 127 (179)
++. +||+|++..
T Consensus 232 -------~p~-~~D~v~~~~ 243 (332)
T 3i53_A 232 -------LPA-GAGGYVLSA 243 (332)
T ss_dssp -------CCC-SCSEEEEES
T ss_pred -------CCC-CCcEEEEeh
Confidence 343 799999854
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=3.8e-06 Score=73.28 Aligned_cols=69 Identities=19% Similarity=0.044 Sum_probs=53.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCC--eeEEeccccchh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEG--VIQVQGDITNAR 106 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~--v~~i~gDi~~~~ 106 (179)
++|.+|||++||+|+++..++.+.+. ..+|+++|+++.. .+.+ ++++++|+++..
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~g------------a~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l 118 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSC------------VEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFL 118 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSC------------EEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHH
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCC------------CCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHH
Confidence 46889999999999999999987531 2689999999841 2444 889999987642
Q ss_pred hHHHHHh-hcCCCCccEEeeCC
Q 030299 107 TAEVVIR-HFDGCKADLVVCDG 127 (179)
Q Consensus 107 ~~~~l~~-~~~~~~~D~VlsD~ 127 (179)
. .+ ...||+|+.|.
T Consensus 119 ------~~~~-~~~fD~V~lDP 133 (392)
T 3axs_A 119 ------RKEW-GFGFDYVDLDP 133 (392)
T ss_dssp ------HSCC-SSCEEEEEECC
T ss_pred ------HHhh-CCCCcEEEECC
Confidence 1 12 35799999997
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=97.99 E-value=7.6e-06 Score=68.12 Aligned_cols=108 Identities=12% Similarity=0.000 Sum_probs=70.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------C-CCCeeEEeccccchhhHHHHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P-IEGVIQVQGDITNARTAEVVI 112 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~-~~~v~~i~gDi~~~~~~~~l~ 112 (179)
.++++|||||||+|..|..++++.+. ..++|+|+|+++.. . ..+++++++|+.+.+..+
T Consensus 41 ~~~~~VLEIG~G~G~lt~~La~~~~~-----------~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~~--- 106 (279)
T 3uzu_A 41 ERGERMVEIGPGLGALTGPVIARLAT-----------PGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFGS--- 106 (279)
T ss_dssp CTTCEEEEECCTTSTTHHHHHHHHCB-----------TTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGGG---
T ss_pred CCcCEEEEEccccHHHHHHHHHhCCC-----------cCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChhH---
Confidence 67899999999999999999998641 01459999999831 1 358999999999875321
Q ss_pred hhcCCC--CccEEeeCCCCCCCCCCcccHHHHHHHHHHHHHHH-----------------H-------HHHHHHHHHHhh
Q 030299 113 RHFDGC--KADLVVCDGAPDVTGLHDMDEFVQSQLILAVSIQF-----------------F-------IYELVFCLRQLL 166 (179)
Q Consensus 113 ~~~~~~--~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~~~-----------------~-------~~~~~~~~~~~f 166 (179)
.+... ....|+++.+ ...+..++...|... + .++.+.++-|.|
T Consensus 107 -~~~~~~~~~~~vv~NlP----------Y~iss~il~~ll~~~~~~~~~~~m~QkEva~Rl~A~pg~k~yg~lSv~~q~~ 175 (279)
T 3uzu_A 107 -IARPGDEPSLRIIGNLP----------YNISSPLLFHLMSFAPVVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYR 175 (279)
T ss_dssp -GSCSSSSCCEEEEEECC----------HHHHHHHHHHHGGGGGGEEEEEEEEEHHHHHHHTCCTTSTTCCHHHHHHHHH
T ss_pred -hcccccCCceEEEEccC----------ccccHHHHHHHHhccCCccEEEEEeeHHHHHHHhCCCCCCcccHHHHHHhhh
Confidence 11111 2456777654 344555554444321 1 145666777777
Q ss_pred ceEEEe
Q 030299 167 QYVILD 172 (179)
Q Consensus 167 ~~v~~~ 172 (179)
-.|++.
T Consensus 176 ~~~~~~ 181 (279)
T 3uzu_A 176 YVMDKL 181 (279)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 777654
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=97.98 E-value=8.4e-06 Score=69.39 Aligned_cols=67 Identities=16% Similarity=0.187 Sum_probs=52.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CC-CCeeEEeccccchh-h
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PI-EGVIQVQGDITNAR-T 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~-~~v~~i~gDi~~~~-~ 107 (179)
.+..+|||||||+|.++..++++.+ ..+++++|+..+. .. .+++++.+|+++.+ +
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p-------------~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 244 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNK-------------EVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVP 244 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHST-------------TCEEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCC
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCC-------------CCEEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCC
Confidence 4567999999999999999999875 5799999983221 11 46999999999852 1
Q ss_pred HHHHHhhcCCCCccEEeeCC
Q 030299 108 AEVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~ 127 (179)
++ .+||+|++..
T Consensus 245 -------~p-~~~D~v~~~~ 256 (363)
T 3dp7_A 245 -------FP-TGFDAVWMSQ 256 (363)
T ss_dssp -------CC-CCCSEEEEES
T ss_pred -------CC-CCcCEEEEec
Confidence 23 5799999854
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.95 E-value=5.2e-06 Score=68.55 Aligned_cols=69 Identities=20% Similarity=0.183 Sum_probs=53.1
Q ss_pred CCC--CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------C------C----C-CCeeE
Q 030299 40 EGV--KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------A------P----I-EGVIQ 97 (179)
Q Consensus 40 ~~g--~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~------~----~-~~v~~ 97 (179)
+++ .+|||++||.|..+.+++.+ + ++|+++|+++. + . + .++++
T Consensus 85 ~~g~~~~VLDl~~G~G~dal~lA~~-g--------------~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~ 149 (258)
T 2oyr_A 85 KGDYLPDVVDATAGLGRDAFVLASV-G--------------CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQL 149 (258)
T ss_dssp BTTBCCCEEETTCTTCHHHHHHHHH-T--------------CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEE
T ss_pred cCCCCCEEEEcCCcCCHHHHHHHHc-C--------------CEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEE
Confidence 566 89999999999999999997 3 57999999992 1 0 2 45889
Q ss_pred EeccccchhhHHHHHhhcCCCCccEEeeCCCCC
Q 030299 98 VQGDITNARTAEVVIRHFDGCKADLVVCDGAPD 130 (179)
Q Consensus 98 i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~ 130 (179)
+++|..+.. +.+++ .||+|+.|.+..
T Consensus 150 ~~~D~~~~L------~~~~~-~fDvV~lDP~y~ 175 (258)
T 2oyr_A 150 IHASSLTAL------TDITP-RPQVVYLDPMFP 175 (258)
T ss_dssp EESCHHHHS------TTCSS-CCSEEEECCCCC
T ss_pred EECCHHHHH------HhCcc-cCCEEEEcCCCC
Confidence 999987742 12333 699999997653
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=97.89 E-value=3.6e-06 Score=68.90 Aligned_cols=34 Identities=12% Similarity=0.209 Sum_probs=26.6
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~ 88 (179)
++.+|||||||+|.++..++.. + ...|+|+|+++
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~-~-------------~~~v~gvD~s~ 104 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACS-H-------------FEDITMTDFLE 104 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGG-G-------------CSEEEEECSCH
T ss_pred CCCeEEEECCCcChHHHHhhcc-C-------------CCeEEEeCCCH
Confidence 6789999999999955444332 2 36999999998
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=97.85 E-value=3e-05 Score=67.13 Aligned_cols=81 Identities=11% Similarity=0.012 Sum_probs=55.7
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCC----CCCCCC---------------------CCCCCCeEEEEeCCCCC----
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPA----KLSPDS---------------------REGDLPLIVAIDLQPMA---- 90 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~----~~~~~~---------------------~~~~~~~VvavD~~~~~---- 90 (179)
.++.+|||+|||+|.++..++......+ +.++-. +......|+|+|+++..
T Consensus 194 ~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~A 273 (385)
T 3ldu_A 194 KAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIA 273 (385)
T ss_dssp CTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHH
Confidence 5788999999999999999988753210 001100 01123679999999831
Q ss_pred -------CCC-CeeEEeccccchhhHHHHHhhcCCCCccEEeeCCCC
Q 030299 91 -------PIE-GVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 91 -------~~~-~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
.+. .+++.++|+.+.. ...++|+|++|.+.
T Consensus 274 r~Na~~~gl~~~i~~~~~D~~~l~---------~~~~~D~Iv~NPPy 311 (385)
T 3ldu_A 274 RENAEIAGVDEYIEFNVGDATQFK---------SEDEFGFIITNPPY 311 (385)
T ss_dssp HHHHHHHTCGGGEEEEECCGGGCC---------CSCBSCEEEECCCC
T ss_pred HHHHHHcCCCCceEEEECChhhcC---------cCCCCcEEEECCCC
Confidence 232 5889999999864 23589999999763
|
| >2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus} | Back alignment and structure |
|---|
Probab=97.84 E-value=2.9e-05 Score=65.20 Aligned_cols=84 Identities=6% Similarity=0.028 Sum_probs=63.8
Q ss_pred CCeEEEEeCCC---------CCCCCCeeEE-eccccchhhHHHHHhhcCCCCccEEeeCCCCCCCCCC-c--ccHHHHHH
Q 030299 78 LPLIVAIDLQP---------MAPIEGVIQV-QGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLH-D--MDEFVQSQ 144 (179)
Q Consensus 78 ~~~VvavD~~~---------~~~~~~v~~i-~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~-~--~d~~~q~~ 144 (179)
+..|+-||..- |.|++|+.++ ++|++++++. +++|+|+|||+|+.+|++ . .||...+.
T Consensus 164 g~~vl~v~~~~~~p~k~v~wi~Pi~GAt~~~~lDfg~p~~~---------~k~DvV~SDMApn~sGh~yqQC~DHarii~ 234 (320)
T 2hwk_A 164 GRTVLVVGEKLSVPGKMVDWLSDRPEATFRARLDLGIPGDV---------PKYDIIFVNVRTPYKYHHYQQCEDHAIKLS 234 (320)
T ss_dssp CSEEEEEESCCCCTTSEEEEEESSTTCSEECCGGGCSCTTS---------CCEEEEEEECCCCCCSCHHHHHHHHHHHHH
T ss_pred CcEEEEEecccccCCceeEeeccCCCceeecccccCCcccc---------CcCCEEEEcCCCCCCCccccccchHHHHHH
Confidence 35666665221 2468899999 9999998642 579999999999999999 7 78888777
Q ss_pred HHHHHHHHHH--------------------HHHHHHHHHHhhceEEEee
Q 030299 145 LILAVSIQFF--------------------IYELVFCLRQLLQYVILDG 173 (179)
Q Consensus 145 L~~~AL~~~~--------------------~~~~~~~~~~~f~~v~~~~ 173 (179)
| ++..++ .-.++=.|.|-|++|.+++
T Consensus 235 L---al~fA~~vLkPGGtfV~KvyggaDr~se~lv~~LaR~F~~Vr~vK 280 (320)
T 2hwk_A 235 M---LTKKACLHLNPGGTCVSIGYGYADRASESIIGAIARQFKFSRVCK 280 (320)
T ss_dssp H---THHHHGGGEEEEEEEEEEECCCCSHHHHHHHHHHHTTEEEEEEEC
T ss_pred H---HHHHHHHhcCCCceEEEEEecCCcccHHHHHHHHHHhcceeeeeC
Confidence 7 555442 2457788899999998764
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=3.6e-06 Score=72.55 Aligned_cols=71 Identities=10% Similarity=0.020 Sum_probs=46.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCeeEEeccccchhhHHHHHhhc
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHF 115 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----~~~~v~~i~gDi~~~~~~~~l~~~~ 115 (179)
+++.+|||+|||+|.++..++++ ...|+|+|+++.. .-.++......+.. .....+. +
T Consensus 106 ~~~~~VLDiGcG~G~~~~~l~~~---------------g~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~-~~~~~l~--~ 167 (416)
T 4e2x_A 106 GPDPFIVEIGCNDGIMLRTIQEA---------------GVRHLGFEPSSGVAAKAREKGIRVRTDFFEK-ATADDVR--R 167 (416)
T ss_dssp SSSCEEEEETCTTTTTHHHHHHT---------------TCEEEEECCCHHHHHHHHTTTCCEECSCCSH-HHHHHHH--H
T ss_pred CCCCEEEEecCCCCHHHHHHHHc---------------CCcEEEECCCHHHHHHHHHcCCCcceeeech-hhHhhcc--c
Confidence 67889999999999999999875 2689999999831 11133333222211 1111111 2
Q ss_pred CCCCccEEeeCCC
Q 030299 116 DGCKADLVVCDGA 128 (179)
Q Consensus 116 ~~~~~D~VlsD~~ 128 (179)
++++||+|++...
T Consensus 168 ~~~~fD~I~~~~v 180 (416)
T 4e2x_A 168 TEGPANVIYAANT 180 (416)
T ss_dssp HHCCEEEEEEESC
T ss_pred CCCCEEEEEECCh
Confidence 3468999999765
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=97.82 E-value=2.9e-05 Score=67.50 Aligned_cols=81 Identities=12% Similarity=-0.041 Sum_probs=55.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCC----CCCC---------------------CCCCCCCeEEEEeCCCC-----
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAK----LSPD---------------------SREGDLPLIVAIDLQPM----- 89 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~----~~~~---------------------~~~~~~~~VvavD~~~~----- 89 (179)
+++..|||.+||+|.++..++......+. .++- .+......|+|+|+++.
T Consensus 200 ~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~A 279 (393)
T 3k0b_A 200 HPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIA 279 (393)
T ss_dssp CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHH
Confidence 57889999999999999998876532100 0110 00122357999999983
Q ss_pred ------CCCC-CeeEEeccccchhhHHHHHhhcCCCCccEEeeCCCC
Q 030299 90 ------APIE-GVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 90 ------~~~~-~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
..+. .++++++|+.+... ...||+|++|.+.
T Consensus 280 r~Na~~~gl~~~I~~~~~D~~~~~~---------~~~fD~Iv~NPPY 317 (393)
T 3k0b_A 280 KQNAVEAGLGDLITFRQLQVADFQT---------EDEYGVVVANPPY 317 (393)
T ss_dssp HHHHHHTTCTTCSEEEECCGGGCCC---------CCCSCEEEECCCC
T ss_pred HHHHHHcCCCCceEEEECChHhCCC---------CCCCCEEEECCCC
Confidence 1233 48899999998642 3489999999763
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.81 E-value=4.3e-05 Score=65.62 Aligned_cols=87 Identities=20% Similarity=0.116 Sum_probs=63.7
Q ss_pred HHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----C--CCCeeEEecc
Q 030299 29 LLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----P--IEGVIQVQGD 101 (179)
Q Consensus 29 L~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----~--~~~v~~i~gD 101 (179)
|.|+.+-+.+ +||..++|..+|.||.|..+++++++ .++|+|+|..|.. . ..++++++++
T Consensus 46 l~Evl~~L~i-~pggiyVD~TlG~GGHS~~iL~~lg~------------~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~n 112 (347)
T 3tka_A 46 LDEAVNGLNI-RPDGIYIDGTFGRGGHSRLILSQLGE------------EGRLLAIDRDPQAIAVAKTIDDPRFSIIHGP 112 (347)
T ss_dssp THHHHHHTCC-CTTCEEEESCCTTSHHHHHHHTTCCT------------TCEEEEEESCHHHHHHHTTCCCTTEEEEESC
T ss_pred HHHHHHhhCC-CCCCEEEEeCcCCCHHHHHHHHhCCC------------CCEEEEEECCHHHHHHHHhhcCCcEEEEeCC
Confidence 3444444443 78999999999999999999999864 6899999999831 1 2578899999
Q ss_pred ccchhhHHHHHhhcC-CCCccEEeeCCCCCC
Q 030299 102 ITNARTAEVVIRHFD-GCKADLVVCDGAPDV 131 (179)
Q Consensus 102 i~~~~~~~~l~~~~~-~~~~D~VlsD~~~~~ 131 (179)
..+... +..... .+++|.|+.|...+.
T Consensus 113 F~~l~~---~L~~~g~~~~vDgILfDLGVSS 140 (347)
T 3tka_A 113 FSALGE---YVAERDLIGKIDGILLDLGVSS 140 (347)
T ss_dssp GGGHHH---HHHHTTCTTCEEEEEEECSCCH
T ss_pred HHHHHH---HHHhcCCCCcccEEEECCccCH
Confidence 988642 222222 136999999986543
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=97.77 E-value=9.1e-06 Score=63.74 Aligned_cols=61 Identities=15% Similarity=0.204 Sum_probs=46.7
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCeeEEeccccchhhHHHHHhhcC
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHFD 116 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----~~~~v~~i~gDi~~~~~~~~l~~~~~ 116 (179)
++.+|||||||+|.++..++. . +|+|+++.. ...++.++++|+.+.+ ++
T Consensus 47 ~~~~vLDiG~G~G~~~~~l~~-----------------~--~~vD~s~~~~~~a~~~~~~~~~~d~~~~~--------~~ 99 (219)
T 1vlm_A 47 PEGRGVEIGVGTGRFAVPLKI-----------------K--IGVEPSERMAEIARKRGVFVLKGTAENLP--------LK 99 (219)
T ss_dssp CSSCEEEETCTTSTTHHHHTC-----------------C--EEEESCHHHHHHHHHTTCEEEECBTTBCC--------SC
T ss_pred CCCcEEEeCCCCCHHHHHHHH-----------------H--hccCCCHHHHHHHHhcCCEEEEcccccCC--------CC
Confidence 488999999999999887631 2 999999831 1127889999998754 34
Q ss_pred CCCccEEeeCCC
Q 030299 117 GCKADLVVCDGA 128 (179)
Q Consensus 117 ~~~~D~VlsD~~ 128 (179)
++.||+|++...
T Consensus 100 ~~~fD~v~~~~~ 111 (219)
T 1vlm_A 100 DESFDFALMVTT 111 (219)
T ss_dssp TTCEEEEEEESC
T ss_pred CCCeeEEEEcch
Confidence 568999999764
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=97.73 E-value=5.2e-05 Score=65.75 Aligned_cols=81 Identities=14% Similarity=-0.058 Sum_probs=55.7
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCC----CCCCC---------------------CCCCCCeEEEEeCCCCC----
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAK----LSPDS---------------------REGDLPLIVAIDLQPMA---- 90 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~----~~~~~---------------------~~~~~~~VvavD~~~~~---- 90 (179)
+++..|+|.+||+|.+...++......+. .++-. +......|+|+|+++..
T Consensus 193 ~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~A 272 (384)
T 3ldg_A 193 FPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIA 272 (384)
T ss_dssp CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHH
Confidence 67889999999999999988876532110 01100 01123579999999831
Q ss_pred -------CCC-CeeEEeccccchhhHHHHHhhcCCCCccEEeeCCCC
Q 030299 91 -------PIE-GVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 91 -------~~~-~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
.+. .++++++|+++... ...||+|++|.+.
T Consensus 273 r~Na~~~gl~~~I~~~~~D~~~l~~---------~~~fD~Iv~NPPY 310 (384)
T 3ldg_A 273 RKNAREVGLEDVVKLKQMRLQDFKT---------NKINGVLISNPPY 310 (384)
T ss_dssp HHHHHHTTCTTTEEEEECCGGGCCC---------CCCSCEEEECCCC
T ss_pred HHHHHHcCCCCceEEEECChHHCCc---------cCCcCEEEECCch
Confidence 233 48899999998642 2479999999764
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=97.71 E-value=3.2e-05 Score=67.83 Aligned_cols=82 Identities=12% Similarity=0.043 Sum_probs=53.6
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCC-CCCCCCCeEEEEeCCCC-----------CCCC--CeeEEeccccch
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPD-SREGDLPLIVAIDLQPM-----------APIE--GVIQVQGDITNA 105 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~-~~~~~~~~VvavD~~~~-----------~~~~--~v~~i~gDi~~~ 105 (179)
.++.+|+|.|||+|+++..+++.+.... .... .+......++|+|+++. ..+. ++.+.++|....
T Consensus 170 ~~~~~VlDpacGsG~fl~~~~~~l~~~~-~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~ 248 (445)
T 2okc_A 170 QMGETVCDPACGTGGFLLTAYDYMKGQS-ASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEK 248 (445)
T ss_dssp CTTCCEEETTCTTCHHHHHHHHHHHTCC--CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTS
T ss_pred CCCCEEeccCCCcchHHHHHHHHHHHhc-CCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCC
Confidence 4678999999999999999988752100 0000 00001357999999983 1222 567889998775
Q ss_pred hhHHHHHhhcCCCCccEEeeCCCCCC
Q 030299 106 RTAEVVIRHFDGCKADLVVCDGAPDV 131 (179)
Q Consensus 106 ~~~~~l~~~~~~~~~D~VlsD~~~~~ 131 (179)
+ ...+||+|+++.+...
T Consensus 249 ~---------~~~~fD~Iv~NPPf~~ 265 (445)
T 2okc_A 249 E---------PSTLVDVILANPPFGT 265 (445)
T ss_dssp C---------CSSCEEEEEECCCSSC
T ss_pred c---------ccCCcCEEEECCCCCC
Confidence 3 1248999999976544
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=97.69 E-value=5.3e-05 Score=62.23 Aligned_cols=62 Identities=15% Similarity=0.078 Sum_probs=48.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC------C--C-------CCCeeEEeccccc
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------A--P-------IEGVIQVQGDITN 104 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~------~--~-------~~~v~~i~gDi~~ 104 (179)
.++.+|||||||.|+.+..+++. + .+|+++|+++. + + .++++++.+|..+
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~--------------~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~ 135 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D--------------THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDL 135 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S--------------CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGS
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C--------------CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHH
Confidence 35679999999999999988765 3 58999999972 1 1 2468888888876
Q ss_pred hhhHHHHHhhcCCCCccEEeeCC
Q 030299 105 ARTAEVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 105 ~~~~~~l~~~~~~~~~D~VlsD~ 127 (179)
. . ++||+|++|.
T Consensus 136 ~----------~-~~fD~Ii~d~ 147 (262)
T 2cmg_A 136 D----------I-KKYDLIFCLQ 147 (262)
T ss_dssp C----------C-CCEEEEEESS
T ss_pred H----------H-hhCCEEEECC
Confidence 3 1 5799999995
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00014 Score=60.65 Aligned_cols=53 Identities=13% Similarity=0.260 Sum_probs=39.0
Q ss_pred CCEEEEEccCC--ChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC----C-------CCCCeeEEeccccchh
Q 030299 42 VKRVVDLCAAP--GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM----A-------PIEGVIQVQGDITNAR 106 (179)
Q Consensus 42 g~~VlDLgagp--Gg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~----~-------~~~~v~~i~gDi~~~~ 106 (179)
..+|||||||+ ++.+..++++..+ ..+|+++|.+|. . +..++.++++|+++++
T Consensus 79 ~~q~LDLGcG~pT~~~~~~la~~~~P------------~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~ 144 (277)
T 3giw_A 79 IRQFLDIGTGIPTSPNLHEIAQSVAP------------ESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPA 144 (277)
T ss_dssp CCEEEEESCCSCCSSCHHHHHHHHCT------------TCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHH
T ss_pred CCEEEEeCCCCCcccHHHHHHHHHCC------------CCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChh
Confidence 37899999997 4555555555432 689999999993 1 1235899999999974
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=7.3e-05 Score=62.03 Aligned_cols=39 Identities=23% Similarity=0.213 Sum_probs=28.5
Q ss_pred CCCEEEEEccCCCh----HHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC
Q 030299 41 GVKRVVDLCAAPGS----WSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (179)
Q Consensus 41 ~g~~VlDLgagpGg----~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~ 88 (179)
++.+|+|+|||+|- .+..+++..+.. ....+|+|+|+++
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~---------~~~~~I~atDis~ 147 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMA---------PGRWKVFASDIDT 147 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSC---------TTSEEEEEEESCH
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccC---------CCCeEEEEEECCH
Confidence 45699999999998 556677765420 0025899999998
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=97.57 E-value=9.9e-05 Score=65.15 Aligned_cols=71 Identities=8% Similarity=0.012 Sum_probs=51.9
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC------------C------C--CCCeeEE
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------------A------P--IEGVIQV 98 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~------------~------~--~~~v~~i 98 (179)
+.++.+|||||||+|..+..++++.+ ...|+|+|+++. + . ..+++++
T Consensus 240 l~~g~~VLDLGCGsG~la~~LA~~~g-------------~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i 306 (433)
T 1u2z_A 240 LKKGDTFMDLGSGVGNCVVQAALECG-------------CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFS 306 (433)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHC-------------CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEE
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHCC-------------CCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEE
Confidence 36889999999999999999999876 368999999983 1 1 3578888
Q ss_pred ecccc-chhhHHHHHhhcCCCCccEEeeCC
Q 030299 99 QGDIT-NARTAEVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 99 ~gDi~-~~~~~~~l~~~~~~~~~D~VlsD~ 127 (179)
++|.. +...... ....||+|+++.
T Consensus 307 ~gD~~~~~~~~~~-----~~~~FDvIvvn~ 331 (433)
T 1u2z_A 307 LKKSFVDNNRVAE-----LIPQCDVILVNN 331 (433)
T ss_dssp ESSCSTTCHHHHH-----HGGGCSEEEECC
T ss_pred EcCcccccccccc-----ccCCCCEEEEeC
Confidence 88654 3211100 124799999864
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00013 Score=60.21 Aligned_cols=63 Identities=14% Similarity=0.050 Sum_probs=48.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~ 109 (179)
.++.+|||||||.|-++..+. + ...++|+|+++-. ......+..+|....+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~-------------~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~--- 164 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---G-------------IASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAP--- 164 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---T-------------CSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSC---
T ss_pred CCCCeEEEecCCccHHHHHhc---c-------------CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCC---
Confidence 567899999999999998876 4 5899999999831 1245667788888754
Q ss_pred HHHhhcCCCCccEEeeCC
Q 030299 110 VVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~ 127 (179)
+..++|+|++..
T Consensus 165 ------~~~~~DvvLllk 176 (253)
T 3frh_A 165 ------PAEAGDLALIFK 176 (253)
T ss_dssp ------CCCBCSEEEEES
T ss_pred ------CCCCcchHHHHH
Confidence 235899998753
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00012 Score=66.05 Aligned_cols=85 Identities=16% Similarity=0.053 Sum_probs=54.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCC-----CCCCCeEEEEeCCCC-----------CCCCC-----eeEE
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSR-----EGDLPLIVAIDLQPM-----------APIEG-----VIQV 98 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~-----~~~~~~VvavD~~~~-----------~~~~~-----v~~i 98 (179)
.++.+|+|.|||+|++...+++.+.......+... .-....++|+|+++. ....+ +.+.
T Consensus 168 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~ 247 (541)
T 2ar0_A 168 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIR 247 (541)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEE
T ss_pred CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeE
Confidence 46789999999999999999887642100000000 000247999999983 12333 6678
Q ss_pred eccccchhhHHHHHhhcCCCCccEEeeCCCCCC
Q 030299 99 QGDITNARTAEVVIRHFDGCKADLVVCDGAPDV 131 (179)
Q Consensus 99 ~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~ 131 (179)
++|....+. ....+||+|+++.++..
T Consensus 248 ~gDtL~~~~-------~~~~~fD~Vv~NPPf~~ 273 (541)
T 2ar0_A 248 LGNTLGSDG-------ENLPKAHIVATNPPFGS 273 (541)
T ss_dssp ESCTTSHHH-------HTSCCEEEEEECCCCTT
T ss_pred eCCCccccc-------ccccCCeEEEECCCccc
Confidence 898876432 13457999999976544
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00011 Score=62.48 Aligned_cols=64 Identities=17% Similarity=0.130 Sum_probs=49.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~ 109 (179)
.+..+|+|||||+|.++..++++.+ ..+++..|+.++. ..++|+++.+|+++.+
T Consensus 178 ~~~~~v~DvGgG~G~~~~~l~~~~p-------------~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~~~~--- 241 (353)
T 4a6d_A 178 SVFPLMCDLGGGAGALAKECMSLYP-------------GCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDP--- 241 (353)
T ss_dssp GGCSEEEEETCTTSHHHHHHHHHCS-------------SCEEEEEECHHHHHHHHHHSCC--CCSEEEEESCTTTSC---
T ss_pred ccCCeEEeeCCCCCHHHHHHHHhCC-------------CceeEeccCHHHHHHHHHhhhhcccCceeeecCccccCC---
Confidence 5678999999999999999999986 5788989974431 2368999999998643
Q ss_pred HHHhhcCCCCccEEeeC
Q 030299 110 VVIRHFDGCKADLVVCD 126 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD 126 (179)
. ..+|+|+.-
T Consensus 242 -----~--~~~D~~~~~ 251 (353)
T 4a6d_A 242 -----L--PEADLYILA 251 (353)
T ss_dssp -----C--CCCSEEEEE
T ss_pred -----C--CCceEEEee
Confidence 1 246777764
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=4.8e-05 Score=63.53 Aligned_cols=69 Identities=12% Similarity=-0.023 Sum_probs=51.6
Q ss_pred CCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhh
Q 030299 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNART 107 (179)
Q Consensus 38 ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~ 107 (179)
.+.+..+|||||||.|-++..+....+ ...|+|+|+++-. .-.+..+...|....+
T Consensus 129 ~i~~p~~VLDLGCG~GpLAl~~~~~~p-------------~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~- 194 (281)
T 3lcv_B 129 HLPRPNTLRDLACGLNPLAAPWMGLPA-------------ETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDR- 194 (281)
T ss_dssp GSCCCSEEEETTCTTGGGCCTTTTCCT-------------TCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSC-
T ss_pred ccCCCceeeeeccCccHHHHHHHhhCC-------------CCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccC-
Confidence 556678999999999999998876543 6899999999831 1123566777777653
Q ss_pred HHHHHhhcCCCCccEEeeCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~ 128 (179)
+..++|++|+...
T Consensus 195 --------p~~~~DvaL~lkt 207 (281)
T 3lcv_B 195 --------LDEPADVTLLLKT 207 (281)
T ss_dssp --------CCSCCSEEEETTC
T ss_pred --------CCCCcchHHHHHH
Confidence 4568999988653
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00022 Score=65.77 Aligned_cols=69 Identities=22% Similarity=0.158 Sum_probs=49.5
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----------C-CCeeEEeccccchhhHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----------I-EGVIQVQGDITNARTAEV 110 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~----------~-~~v~~i~gDi~~~~~~~~ 110 (179)
+..|||+|||+|-.+...++..... ....+|+||+-+||.. . ..|++++||+++.+
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~---------~~~vkVyAVEknp~A~~a~~~v~~N~~~dkVtVI~gd~eev~---- 424 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQA---------DRRIKLYAVEKNPNAVVTLENWQFEEWGSQVTVVSSDMREWV---- 424 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHT---------TCEEEEEEEESCHHHHHHHHHHHHHTTGGGEEEEESCTTTCC----
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhc---------CCCcEEEEEECCHHHHHHHHHHHhccCCCeEEEEeCcceecc----
Confidence 4579999999999965554432100 0124799999999731 1 35899999999986
Q ss_pred HHhhcCCCCccEEeeCCC
Q 030299 111 VIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 111 l~~~~~~~~~D~VlsD~~ 128 (179)
++ +++|+|+|-..
T Consensus 425 ----LP-EKVDIIVSEwM 437 (637)
T 4gqb_A 425 ----AP-EKADIIVSELL 437 (637)
T ss_dssp ----CS-SCEEEEECCCC
T ss_pred ----CC-cccCEEEEEcC
Confidence 34 58999999764
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00056 Score=61.84 Aligned_cols=76 Identities=12% Similarity=0.003 Sum_probs=55.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCC--CCeeEEeccccchh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------API--EGVIQVQGDITNAR 106 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~--~~v~~i~gDi~~~~ 106 (179)
.++.+|+|.|||+|++...+++++.. .....++|+|+++. ..+ .++.+.++|....+
T Consensus 220 ~~~~~VlDPaCGSG~fLi~a~~~l~~----------~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d 289 (542)
T 3lkd_A 220 KQGFTLYDATMGSGSLLLNAKRYSRQ----------PQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDED 289 (542)
T ss_dssp CTTCEEEETTCTTSTTGGGHHHHCSC----------TTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSC
T ss_pred CCCCEEeecccchhHHHHHHHHHHHh----------ccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceeccc
Confidence 46789999999999999999888631 12468999999983 122 35677899987642
Q ss_pred hHHHHHhhcCCCCccEEeeCCCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGAPD 130 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~~~ 130 (179)
.. .....+||+|+++.+..
T Consensus 290 ~p-----~~~~~~fD~IvaNPPf~ 308 (542)
T 3lkd_A 290 WP-----TQEPTNFDGVLMNPPYS 308 (542)
T ss_dssp SC-----CSSCCCBSEEEECCCTT
T ss_pred cc-----ccccccccEEEecCCcC
Confidence 00 12346899999997765
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0002 Score=66.89 Aligned_cols=84 Identities=11% Similarity=0.042 Sum_probs=50.6
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CC-CCeeEEeccccchhhHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PI-EGVIQVQGDITNARTAEV 110 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~-~~v~~i~gDi~~~~~~~~ 110 (179)
+..|||+|||+|..+..++.........+-+.+.-...+|+|||.+|+. .. ..|+++++|+++.+....
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~ 489 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAK 489 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccc
Confidence 3579999999999986543322100000000000013599999999852 12 349999999999863210
Q ss_pred HHhhcCCCCccEEeeCCC
Q 030299 111 VIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 111 l~~~~~~~~~D~VlsD~~ 128 (179)
.. ..+++|+|+|-..
T Consensus 490 --~~-~~ekVDIIVSElm 504 (745)
T 3ua3_A 490 --DR-GFEQPDIIVSELL 504 (745)
T ss_dssp --HT-TCCCCSEEEECCC
T ss_pred --cC-CCCcccEEEEecc
Confidence 11 1368999999875
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0013 Score=56.81 Aligned_cols=72 Identities=17% Similarity=0.207 Sum_probs=52.7
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CCCCeeEEeccccchhhHHHHHhh-c
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRH-F 115 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~~~v~~i~gDi~~~~~~~~l~~~-~ 115 (179)
.+|+||.||.||++.-+.+. + --.|.|+|+.+.. ..++..++.+||++.... ++... +
T Consensus 3 ~~vidLFsG~GGlslG~~~a-G-------------~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~-~~~~~~~ 67 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARA-G-------------FDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAE-IIKGFFK 67 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHH-T-------------CEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHH-HHHHHHC
T ss_pred CeEEEEccCcCHHHHHHHHC-C-------------CcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHH-HHHhhcc
Confidence 47999999999999998775 3 2357799999852 356788899999987532 23221 2
Q ss_pred CCCCccEEeeCCCC
Q 030299 116 DGCKADLVVCDGAP 129 (179)
Q Consensus 116 ~~~~~D~VlsD~~~ 129 (179)
....+|+|+.+-+|
T Consensus 68 ~~~~~D~i~ggpPC 81 (376)
T 3g7u_A 68 NDMPIDGIIGGPPC 81 (376)
T ss_dssp SCCCCCEEEECCCC
T ss_pred cCCCeeEEEecCCC
Confidence 34579999988764
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0024 Score=54.86 Aligned_cols=58 Identities=14% Similarity=0.043 Sum_probs=46.1
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC--------CCCCCeeEEeccccchhhHHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM--------APIEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~--------~~~~~v~~i~gDi~~~~~~~~l 111 (179)
+++.|||||.|+|.+|+.|+++.. ..+|+++++.+. ...++++.+.+|+.+.+...++
T Consensus 58 ~~~~VlEIGPG~G~LT~~Ll~~~~-------------~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~~~~~~~l 123 (353)
T 1i4w_A 58 EELKVLDLYPGVGIQSAIFYNKYC-------------PRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYDWSTYSNL 123 (353)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHC-------------CSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTCHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHhhCC-------------CCEEEEEecCHHHHHHHHHhccCCCEEEEECCccchhhHHHh
Confidence 468999999999999999999753 258999999972 1246899999999887644333
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0024 Score=59.27 Aligned_cols=84 Identities=10% Similarity=-0.072 Sum_probs=55.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCC-----CCCCC--CC----------------------CCCCeEEEEeCCCCC
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAK-----LSPDS--RE----------------------GDLPLIVAIDLQPMA 90 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~-----~~~~~--~~----------------------~~~~~VvavD~~~~~ 90 (179)
.++..|+|.+||+|.+...++......+. .++-. .. .....|+|+|+++..
T Consensus 189 ~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~a 268 (703)
T 3v97_A 189 QPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARV 268 (703)
T ss_dssp CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHH
T ss_pred CCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHH
Confidence 56789999999999999988876421110 11100 00 123689999999931
Q ss_pred -----------CCCC-eeEEeccccchhhHHHHHhhcCCCCccEEeeCCCC
Q 030299 91 -----------PIEG-VIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 91 -----------~~~~-v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
.+.+ +++.++|+.+.... ...+.+|+|++|.+.
T Consensus 269 v~~A~~N~~~agv~~~i~~~~~D~~~~~~~------~~~~~~d~Iv~NPPY 313 (703)
T 3v97_A 269 IQRARTNARLAGIGELITFEVKDVAQLTNP------LPKGPYGTVLSNPPY 313 (703)
T ss_dssp HHHHHHHHHHTTCGGGEEEEECCGGGCCCS------CTTCCCCEEEECCCC
T ss_pred HHHHHHHHHHcCCCCceEEEECChhhCccc------cccCCCCEEEeCCCc
Confidence 2333 78999999885320 112379999999654
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0026 Score=60.27 Aligned_cols=74 Identities=15% Similarity=0.039 Sum_probs=49.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------------CCCCeeEEeccc
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------------PIEGVIQVQGDI 102 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------------~~~~v~~i~gDi 102 (179)
.++.+|+|.|||+|++...++++++. .....++|+|+++.. ..........|+
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~e----------i~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~ 389 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNN----------VMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDV 389 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTT----------CCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCG
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcc----------cCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecch
Confidence 46889999999999999999887641 012579999999831 011223345555
Q ss_pred cchhhHHHHHhhcCCCCccEEeeCCCCC
Q 030299 103 TNARTAEVVIRHFDGCKADLVVCDGAPD 130 (179)
Q Consensus 103 ~~~~~~~~l~~~~~~~~~D~VlsD~~~~ 130 (179)
.+.+. ....+||+|+++.+..
T Consensus 390 L~~~~-------~~~~kFDVVIgNPPYg 410 (878)
T 3s1s_A 390 CSLNP-------EDFANVSVVVMNPPYV 410 (878)
T ss_dssp GGCCG-------GGGTTEEEEEECCBCC
T ss_pred hcccc-------cccCCCCEEEECCCcc
Confidence 55321 1235799999997654
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0065 Score=48.24 Aligned_cols=73 Identities=19% Similarity=0.157 Sum_probs=48.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CC---CCCeeEEeccccch
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------AP---IEGVIQVQGDITNA 105 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~---~~~v~~i~gDi~~~ 105 (179)
.+.++||++|+ |.-|.++++ .. +++|+++|.++. .+ ..+++++.||+...
T Consensus 29 ~~a~~VLEiGt--GySTl~lA~-~~-------------~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~ 92 (202)
T 3cvo_A 29 EEAEVILEYGS--GGSTVVAAE-LP-------------GKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPT 92 (202)
T ss_dssp HHCSEEEEESC--SHHHHHHHT-ST-------------TCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSB
T ss_pred hCCCEEEEECc--hHHHHHHHH-cC-------------CCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhh
Confidence 56789999998 566666665 32 489999999983 12 23688889997542
Q ss_pred ------------hhHHHHHh---hc-CCCCccEEeeCCC
Q 030299 106 ------------RTAEVVIR---HF-DGCKADLVVCDGA 128 (179)
Q Consensus 106 ------------~~~~~l~~---~~-~~~~~D~VlsD~~ 128 (179)
+...++.. .. ..++||+|+.||.
T Consensus 93 ~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~ 131 (202)
T 3cvo_A 93 GDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGR 131 (202)
T ss_dssp CGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSS
T ss_pred hcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCC
Confidence 11221111 11 2368999999996
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.016 Score=47.28 Aligned_cols=42 Identities=10% Similarity=-0.029 Sum_probs=28.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHh------CCCCCCCCCCCCCCCCeEEEEeCCC
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKL------YLPAKLSPDSREGDLPLIVAIDLQP 88 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~------~~~~~~~~~~~~~~~~~VvavD~~~ 88 (179)
+++.+|||+|+|+|.-+..+++.. .+. . ......++++|..|
T Consensus 59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~------~-~~~~l~~isiE~~p 106 (257)
T 2qy6_A 59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQ------A-QLQRLHFISFEKFP 106 (257)
T ss_dssp SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTT------S-SCCEEEEEEEESSC
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCC------C-CcceeEEEEEECCc
Confidence 355799999999999887766543 320 0 00024899999988
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0037 Score=53.05 Aligned_cols=70 Identities=16% Similarity=0.176 Sum_probs=49.6
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CCCCeeEEeccccchhhHHHHHhhcC
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRHFD 116 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~~~v~~i~gDi~~~~~~~~l~~~~~ 116 (179)
.+|+||.||.||++..+...... ...|+++|+.+.. ..++..++.+||++.... .+.
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~------------~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~-~~~---- 65 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIP------------AQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLE-EFD---- 65 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCS------------EEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHH-HHH----
T ss_pred CeEEEeCcCccHHHHHHHHCCCC------------ceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHh-HcC----
Confidence 47999999999999998776210 1369999999842 245666789999986431 121
Q ss_pred CCCccEEeeCCCC
Q 030299 117 GCKADLVVCDGAP 129 (179)
Q Consensus 117 ~~~~D~VlsD~~~ 129 (179)
...+|+|+.+-+|
T Consensus 66 ~~~~D~l~~gpPC 78 (343)
T 1g55_A 66 RLSFDMILMSPPC 78 (343)
T ss_dssp HHCCSEEEECCC-
T ss_pred cCCcCEEEEcCCC
Confidence 1258999998764
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0039 Score=56.29 Aligned_cols=81 Identities=15% Similarity=0.156 Sum_probs=48.2
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCCCCC-C-CCCCCCCeEEEEeCCCCC-----------CCC-CeeEEeccccchhhHH
Q 030299 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSP-D-SREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNARTAE 109 (179)
Q Consensus 44 ~VlDLgagpGg~s~~l~~~~~~~~~~~~-~-~~~~~~~~VvavD~~~~~-----------~~~-~v~~i~gDi~~~~~~~ 109 (179)
+|+|.|||+|++...+++.+........ + ........++|+|+++.. .+. ++.+.++|....+.
T Consensus 247 ~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~-- 324 (544)
T 3khk_A 247 RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQ-- 324 (544)
T ss_dssp EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCS--
T ss_pred eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCcc--
Confidence 9999999999998887665420000000 0 000002479999999831 111 23236777665431
Q ss_pred HHHhhcCCCCccEEeeCCCCCC
Q 030299 110 VVIRHFDGCKADLVVCDGAPDV 131 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~~~~ 131 (179)
+...+||+|+++.+...
T Consensus 325 -----~~~~~fD~Iv~NPPf~~ 341 (544)
T 3khk_A 325 -----HPDLRADFVMTNPPFNM 341 (544)
T ss_dssp -----CTTCCEEEEEECCCSSC
T ss_pred -----cccccccEEEECCCcCC
Confidence 23468999999987754
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0069 Score=54.44 Aligned_cols=88 Identities=11% Similarity=-0.022 Sum_probs=52.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~~~v~~i~gDi~~~~~~ 108 (179)
.++.+|+|-|||+|||...+.+.+....+............++|+|+.+. .......+..+|....+..
T Consensus 216 ~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~~~ 295 (530)
T 3ufb_A 216 QLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFPLR 295 (530)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSCGG
T ss_pred CCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccccccccccCchh
Confidence 46789999999999999888776642100000000001246999999983 1223334557776543211
Q ss_pred HHHHhhcCCCCccEEeeCCCCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGAPDV 131 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~~~ 131 (179)
......+||+|+++.+++.
T Consensus 296 ----~~~~~~~fD~Il~NPPf~~ 314 (530)
T 3ufb_A 296 ----EMGDKDRVDVILTNPPFGG 314 (530)
T ss_dssp ----GCCGGGCBSEEEECCCSSC
T ss_pred ----hhcccccceEEEecCCCCc
Confidence 1122357999999977643
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.02 Score=47.97 Aligned_cols=112 Identities=12% Similarity=-0.002 Sum_probs=74.1
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------------CCCCeeEEecccc
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------------PIEGVIQVQGDIT 103 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------------~~~~v~~i~gDi~ 103 (179)
.+..+||=||.|-|+....+++..+ ..+|+.||+.|.- .-++++.+.+|..
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~-------------v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~ 148 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKN-------------VESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGV 148 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTT-------------CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTT
T ss_pred CCCCeEEEECCCchHHHHHHHHcCC-------------cceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHH
Confidence 4567999999999999998887543 4689999999830 1368999999998
Q ss_pred chhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHHH---H------------HHHHHHHHHHHhhce
Q 030299 104 NARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSIQ---F------------FIYELVFCLRQLLQY 168 (179)
Q Consensus 104 ~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~~---~------------~~~~~~~~~~~~f~~ 168 (179)
..-. -..++||+|+.|..-..+-....-...-.+++..+|+- + .+...+=-+++.|..
T Consensus 149 ~~l~-------~~~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp~~~~~~~~~~~~~l~~~F~~ 221 (294)
T 3o4f_A 149 NFVN-------QTSQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRKLSHYFSD 221 (294)
T ss_dssp TTTS-------CSSCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEESSSCCHHHHHHHHHHHHHCSE
T ss_pred HHHh-------hccccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCCcccChHHHHHHHHHHHhhCCc
Confidence 7521 13468999999986332222222223345666666651 0 123344456888888
Q ss_pred EEE
Q 030299 169 VIL 171 (179)
Q Consensus 169 v~~ 171 (179)
|..
T Consensus 222 v~~ 224 (294)
T 3o4f_A 222 VGF 224 (294)
T ss_dssp EEE
T ss_pred eee
Confidence 765
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=95.72 E-value=0.011 Score=48.70 Aligned_cols=35 Identities=20% Similarity=0.081 Sum_probs=30.1
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~ 89 (179)
.+|+.|||++||+|..+..++.. + ..++|+|+++.
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a~~~-g--------------~~~~g~e~~~~ 268 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAAARW-G--------------RRALGVELVPR 268 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT-T--------------CEEEEEESCHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHc-C--------------CeEEEEeCCHH
Confidence 68999999999999998887664 3 58999999983
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.051 Score=45.11 Aligned_cols=74 Identities=12% Similarity=-0.038 Sum_probs=51.3
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------------------------------
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------------------------ 90 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------------------------------ 90 (179)
....||++|+..|+.+..++..++.. +.++.+|+++|.....
T Consensus 106 ~pg~IlEiGv~~G~Sai~ma~~l~~~--------g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~a 177 (282)
T 2wk1_A 106 VPGDLVETGVWRGGACILMRGILRAH--------DVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEV 177 (282)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHHHHT--------TCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHH
T ss_pred CCCcEEEeecCchHHHHHHHHHhHhc--------CCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHH
Confidence 35599999999999999988765310 0015789999975310
Q ss_pred -------CC--CCeeEEeccccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 91 -------PI--EGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 91 -------~~--~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
++ .+++++.||+.+.- ..++..++|+|..|+.
T Consensus 178 r~n~~~~gl~~~~I~li~Gda~etL------~~~~~~~~d~vfIDaD 218 (282)
T 2wk1_A 178 RRNFRNYDLLDEQVRFLPGWFKDTL------PTAPIDTLAVLRMDGD 218 (282)
T ss_dssp HHHHHHTTCCSTTEEEEESCHHHHS------TTCCCCCEEEEEECCC
T ss_pred HHHHHHcCCCcCceEEEEeCHHHHH------hhCCCCCEEEEEEcCC
Confidence 11 56889999986532 1234568999999974
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.2 Score=38.37 Aligned_cols=89 Identities=15% Similarity=0.095 Sum_probs=59.5
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--CCCCeeEEeccccc-hhhHHHHHhhcCCCCc
Q 030299 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--PIEGVIQVQGDITN-ARTAEVVIRHFDGCKA 120 (179)
Q Consensus 44 ~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--~~~~v~~i~gDi~~-~~~~~~l~~~~~~~~~ 120 (179)
+||=.| |+|+.-..+++++.. .+..|++++.++.. ...+++++++|+++ .+...+ .+. .+
T Consensus 2 ~ilItG-atG~iG~~l~~~L~~-----------~g~~V~~~~R~~~~~~~~~~~~~~~~D~~d~~~~~~~---~~~--~~ 64 (219)
T 3dqp_A 2 KIFIVG-STGRVGKSLLKSLST-----------TDYQIYAGARKVEQVPQYNNVKAVHFDVDWTPEEMAK---QLH--GM 64 (219)
T ss_dssp EEEEES-TTSHHHHHHHHHHTT-----------SSCEEEEEESSGGGSCCCTTEEEEECCTTSCHHHHHT---TTT--TC
T ss_pred eEEEEC-CCCHHHHHHHHHHHH-----------CCCEEEEEECCccchhhcCCceEEEecccCCHHHHHH---HHc--CC
Confidence 566556 468888888887753 24789999988743 34789999999999 654433 232 59
Q ss_pred cEEeeCCCCCCCCCCcccHHHHHHHHHHH
Q 030299 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAV 149 (179)
Q Consensus 121 D~VlsD~~~~~~g~~~~d~~~q~~L~~~A 149 (179)
|+|++..+................++..+
T Consensus 65 d~vi~~ag~~~~~~~~~n~~~~~~l~~a~ 93 (219)
T 3dqp_A 65 DAIINVSGSGGKSLLKVDLYGAVKLMQAA 93 (219)
T ss_dssp SEEEECCCCTTSSCCCCCCHHHHHHHHHH
T ss_pred CEEEECCcCCCCCcEeEeHHHHHHHHHHH
Confidence 99999887655444444444445555444
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.045 Score=45.64 Aligned_cols=73 Identities=18% Similarity=0.145 Sum_probs=50.9
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCe-EEEEeCCCCC------CCCCeeEEeccccchhhHHHHHh
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPL-IVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~-VvavD~~~~~------~~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
...+|+||.||.||++.-+.+. +- ... |.++|+.+.. ..++...+.+||++... +++.+
T Consensus 15 ~~~~vidLFaG~GG~~~g~~~a-G~------------~~~~v~a~E~d~~a~~ty~~N~~~~~~~~~DI~~i~~-~~i~~ 80 (295)
T 2qrv_A 15 KPIRVLSLFDGIATGLLVLKDL-GI------------QVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRSVTQ-KHIQE 80 (295)
T ss_dssp CCEEEEEETCTTTHHHHHHHHT-TB------------CEEEEEEECCCHHHHHHHHHHTTTCEEEECCGGGCCH-HHHHH
T ss_pred CCCEEEEeCcCccHHHHHHHHC-CC------------ccceEEEEECCHHHHHHHHHhCCCCceeCCChHHccH-HHhcc
Confidence 4568999999999999888664 31 122 6999999842 24566688999998753 22322
Q ss_pred hcCCCCccEEeeCCCCC
Q 030299 114 HFDGCKADLVVCDGAPD 130 (179)
Q Consensus 114 ~~~~~~~D~VlsD~~~~ 130 (179)
. ..+|+|+..-+|.
T Consensus 81 -~--~~~Dll~ggpPCQ 94 (295)
T 2qrv_A 81 -W--GPFDLVIGGSPCN 94 (295)
T ss_dssp -T--CCCSEEEECCCCG
T ss_pred -c--CCcCEEEecCCCc
Confidence 1 3699999876543
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=94.68 E-value=0.025 Score=47.93 Aligned_cols=70 Identities=14% Similarity=0.255 Sum_probs=48.9
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CCCCeeEEeccccchhhHHHHHhhcCC
Q 030299 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRHFDG 117 (179)
Q Consensus 44 ~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~~~v~~i~gDi~~~~~~~~l~~~~~~ 117 (179)
+|+||.||.||++.-+.+. +. +.-.|.|+|+.+.. ..++..++.+||++... +++ +.
T Consensus 5 ~~idLFaG~GG~~~G~~~a-G~-----------~~~~v~a~e~d~~a~~ty~~N~~~~~~~~~DI~~~~~-~~~----~~ 67 (333)
T 4h0n_A 5 KILELYSGIGGMHCAWKES-GL-----------DGEIVAAVDINTVANSVYKHNFPETNLLNRNIQQLTP-QVI----KK 67 (333)
T ss_dssp EEEEETCTTTHHHHHHHHH-TC-----------SEEEEEEECCCHHHHHHHHHHCTTSCEECCCGGGCCH-HHH----HH
T ss_pred EEEEECcCccHHHHHHHHc-CC-----------CceEEEEEeCCHHHHHHHHHhCCCCceeccccccCCH-HHh----cc
Confidence 7999999999999988665 21 01357899999853 34566678999998753 222 22
Q ss_pred CCccEEeeCCCCC
Q 030299 118 CKADLVVCDGAPD 130 (179)
Q Consensus 118 ~~~D~VlsD~~~~ 130 (179)
..+|+++..-+|.
T Consensus 68 ~~~D~l~ggpPCQ 80 (333)
T 4h0n_A 68 WNVDTILMSPPCQ 80 (333)
T ss_dssp TTCCEEEECCCCC
T ss_pred CCCCEEEecCCCc
Confidence 3689998766543
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=94.51 E-value=0.042 Score=47.59 Aligned_cols=38 Identities=16% Similarity=0.066 Sum_probs=32.0
Q ss_pred CCCCEEEEEccCCChHHHHHHH-HhCCCCCCCCCCCCCCCCeEEEEeCCCC
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSR-KLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~-~~~~~~~~~~~~~~~~~~~VvavD~~~~ 89 (179)
+++..|+|+||..|.+|..++. ..+. .++|+|+++.|.
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~------------~~~V~afEP~p~ 263 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGK------------FERVWMIEPDRI 263 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSC------------CSEEEEECCCHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCC------------CCEEEEEcCCHH
Confidence 7899999999999999999884 4431 379999999983
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=94.28 E-value=0.55 Score=36.71 Aligned_cols=80 Identities=11% Similarity=0.130 Sum_probs=57.2
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCeeEEeccccchhhHHHHHhhcCCCCc
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~~~~v~~i~gDi~~~~~~~~l~~~~~~~~~ 120 (179)
++++||=-|++ ||.-..+++++.. .....|+.+|..+......+.++++|+++.+..+++.+......+
T Consensus 3 ~~k~vlITGas-~gIG~~~a~~l~~----------~~g~~v~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~i 71 (244)
T 4e4y_A 3 AMANYLVTGGS-KGIGKAVVELLLQ----------NKNHTVINIDIQQSFSAENLKFIKADLTKQQDITNVLDIIKNVSF 71 (244)
T ss_dssp CCEEEEEETTT-SHHHHHHHHHHTT----------STTEEEEEEESSCCCCCTTEEEEECCTTCHHHHHHHHHHTTTCCE
T ss_pred CCCeEEEeCCC-ChHHHHHHHHHHh----------cCCcEEEEeccccccccccceEEecCcCCHHHHHHHHHHHHhCCC
Confidence 35567777766 5566666666542 024678899988764556888999999999877777765555579
Q ss_pred cEEeeCCCCCC
Q 030299 121 DLVVCDGAPDV 131 (179)
Q Consensus 121 D~VlsD~~~~~ 131 (179)
|+++++.+...
T Consensus 72 d~lv~nAg~~~ 82 (244)
T 4e4y_A 72 DGIFLNAGILI 82 (244)
T ss_dssp EEEEECCCCCC
T ss_pred CEEEECCccCC
Confidence 99999887543
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=94.15 E-value=0.11 Score=42.88 Aligned_cols=64 Identities=16% Similarity=0.248 Sum_probs=45.1
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CCCCeeEEeccccchhhHHHHHhhcC
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRHFD 116 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~~~v~~i~gDi~~~~~~~~l~~~~~ 116 (179)
.+|+||-||.||++.-+.+. + --.|.|+|+.+.. ..+ -..+.+||++.... .+
T Consensus 1 mkvidLFsG~GG~~~G~~~a-G-------------~~~v~a~e~d~~a~~ty~~N~~-~~~~~~DI~~i~~~-----~~- 59 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKA-G-------------FRIICANEYDKSIWKTYESNHS-AKLIKGDISKISSD-----EF- 59 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHT-T-------------CEEEEEEECCTTTHHHHHHHCC-SEEEESCGGGCCGG-----GS-
T ss_pred CeEEEeCcCccHHHHHHHHC-C-------------CEEEEEEeCCHHHHHHHHHHCC-CCcccCChhhCCHh-----hC-
Confidence 47999999999999987553 3 2357799999964 133 35778999986531 23
Q ss_pred CCCccEEeeCCC
Q 030299 117 GCKADLVVCDGA 128 (179)
Q Consensus 117 ~~~~D~VlsD~~ 128 (179)
..+|+++.--+
T Consensus 60 -~~~D~l~ggpP 70 (331)
T 3ubt_Y 60 -PKCDGIIGGPP 70 (331)
T ss_dssp -CCCSEEECCCC
T ss_pred -CcccEEEecCC
Confidence 36898875443
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=93.84 E-value=0.048 Score=40.54 Aligned_cols=61 Identities=10% Similarity=-0.037 Sum_probs=36.5
Q ss_pred CCCCCEEEEEccCCChH--HHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCeeEEeccccchhhHHHHHhhcC
Q 030299 39 FEGVKRVVDLCAAPGSW--SQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFD 116 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~--s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~~~~v~~i~gDi~~~~~~~~l~~~~~ 116 (179)
+++|++|||||||.... +..+.+.... ....+++++++|+.+.+.. .++
T Consensus 10 ~~~g~~vL~~~~g~v~vD~s~~ml~~a~~------------------------~~~~~~~~~~~d~~~~~~~-----~~~ 60 (176)
T 2ld4_A 10 ISAGQFVAVVWDKSSPVEALKGLVDKLQA------------------------LTGNEGRVSVENIKQLLQS-----AHK 60 (176)
T ss_dssp CCTTSEEEEEECTTSCHHHHHHHHHHHHH------------------------HTTTTSEEEEEEGGGGGGG-----CCC
T ss_pred CCCCCEEEEecCCceeeeCCHHHHHHHHH------------------------hcccCcEEEEechhcCccc-----cCC
Confidence 58999999999997541 1111111100 0012478889999876410 124
Q ss_pred CCCccEEeeCCC
Q 030299 117 GCKADLVVCDGA 128 (179)
Q Consensus 117 ~~~~D~VlsD~~ 128 (179)
+.+||+|++...
T Consensus 61 ~~~fD~V~~~~~ 72 (176)
T 2ld4_A 61 ESSFDIILSGLV 72 (176)
T ss_dssp SSCEEEEEECCS
T ss_pred CCCEeEEEECCh
Confidence 678999998654
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=93.81 E-value=0.045 Score=46.14 Aligned_cols=66 Identities=18% Similarity=0.181 Sum_probs=46.4
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CCCCeeEEeccccchhhHHHHHhhc
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRHF 115 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~~~v~~i~gDi~~~~~~~~l~~~~ 115 (179)
+.+|+||.||.||++.-+... + --.|.++|+.+.. ..+... .+||++.... .+
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~a-G-------------~~~v~~~e~d~~a~~t~~~N~~~~~--~~Di~~~~~~-----~~ 69 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESC-G-------------AECVYSNEWDKYAQEVYEMNFGEKP--EGDITQVNEK-----TI 69 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHT-T-------------CEEEEEECCCHHHHHHHHHHHSCCC--BSCGGGSCGG-----GS
T ss_pred CCcEEEECCCcCHHHHHHHHC-C-------------CeEEEEEeCCHHHHHHHHHHcCCCC--cCCHHHcCHh-----hC
Confidence 468999999999999998765 3 2468899999842 122222 6899886431 22
Q ss_pred CCCCccEEeeCCCCC
Q 030299 116 DGCKADLVVCDGAPD 130 (179)
Q Consensus 116 ~~~~~D~VlsD~~~~ 130 (179)
+ .+|+|+.+-+|.
T Consensus 70 ~--~~D~l~~gpPCQ 82 (327)
T 2c7p_A 70 P--DHDILCAGFPCQ 82 (327)
T ss_dssp C--CCSEEEEECCCT
T ss_pred C--CCCEEEECCCCC
Confidence 2 589999877543
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=93.61 E-value=0.031 Score=47.24 Aligned_cols=72 Identities=7% Similarity=0.132 Sum_probs=47.7
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeE-EEEeCCCCC------CCCCeeEEeccccchhhHHHHHh
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLI-VAIDLQPMA------PIEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~V-vavD~~~~~------~~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
..-+|+||.||.||++.-+.+. +- +.-.| .|+|+.+.. ..++. .+.+||++... +++.
T Consensus 9 ~~~~vidLFaG~GG~~~G~~~a-G~-----------~~~~v~~a~e~d~~a~~ty~~N~~~~-~~~~DI~~~~~-~~i~- 73 (327)
T 3qv2_A 9 KQVNVIEFFSGIGGLRSSYERS-SI-----------NINATFIPFDINEIANKIYSKNFKEE-VQVKNLDSISI-KQIE- 73 (327)
T ss_dssp CCEEEEEETCTTTHHHHHHHHS-SC-----------CCCEEEEEECCCHHHHHHHHHHHCCC-CBCCCTTTCCH-HHHH-
T ss_pred CCCEEEEECCChhHHHHHHHHc-CC-----------CceEEEEEEECCHHHHHHHHHHCCCC-cccCChhhcCH-HHhc-
Confidence 3458999999999999988664 21 01245 699999842 12333 56899998753 2222
Q ss_pred hcCCCCccEEeeCCCCC
Q 030299 114 HFDGCKADLVVCDGAPD 130 (179)
Q Consensus 114 ~~~~~~~D~VlsD~~~~ 130 (179)
...+|+++..-+|.
T Consensus 74 ---~~~~Dil~ggpPCQ 87 (327)
T 3qv2_A 74 ---SLNCNTWFMSPPCQ 87 (327)
T ss_dssp ---HTCCCEEEECCCCT
T ss_pred ---cCCCCEEEecCCcc
Confidence 23689999866543
|
| >3mag_A VP39; methylated adenine, methyltransferase, RNA CAP analog, poly (A) polymerase, mRNA processing, transcription; HET: SAH 3MA; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1bky_A* 1jsz_A* 1v39_A* 1p39_A* 1vp9_A* 2vp3_A* 1eam_A* 1jte_A* 1jtf_A* 4dcg_A* 3mct_A* 1b42_A* 1eqa_A* 1av6_A* 3er9_A* 2gaf_A 3er8_A 2ga9_A* 3erc_A* | Back alignment and structure |
|---|
Probab=93.21 E-value=1.2 Score=37.46 Aligned_cols=83 Identities=17% Similarity=0.184 Sum_probs=54.6
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCeeEEeccccchhhHHHHHhhcC
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHFD 116 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----~~~~v~~i~gDi~~~~~~~~l~~~~~ 116 (179)
.|..|+=+|||||....++++..+.. +...+.+.+|..|.. +.+||..++. ..+.....++.+.+.
T Consensus 60 ~~~~VVYVGSApG~HL~~L~~~fp~~---------f~~ikWvLiDPap~~~~l~~~~NV~li~~-fvde~dl~~l~~~~~ 129 (307)
T 3mag_A 60 DGATVVYIGSAPGTHIRYLRDHFYNL---------GVIIKWMLIDGRHHDPILNGLRDVTLVTR-FVDEEYLRSIKKQLH 129 (307)
T ss_dssp TTCEEEEESCCSCHHHHHHHHHHHHT---------TCCCEEEEEESSCCCGGGTTCTTEEEEEC-CCCHHHHHHHHHHHT
T ss_pred CCcEEEEecccCccHHHHHHHhchhh---------CCCeEEEEEcCCcchhhhcCCCcEEEEec-cCCHHHHHHHHHhcc
Confidence 46899999999999999999876520 124689999998864 5688987766 346555555554443
Q ss_pred CCCccEEeeCCCCCCCCC
Q 030299 117 GCKADLVVCDGAPDVTGL 134 (179)
Q Consensus 117 ~~~~D~VlsD~~~~~~g~ 134 (179)
..==+.++|....-.+.
T Consensus 130 -~~~iLLISDIRS~r~~~ 146 (307)
T 3mag_A 130 -PSKIILISDVRSKRGGN 146 (307)
T ss_dssp -TSCEEEEECCCC-----
T ss_pred -CCCEEEEEEecCCCCCC
Confidence 23345678887554333
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=92.94 E-value=0.36 Score=39.34 Aligned_cols=72 Identities=18% Similarity=0.194 Sum_probs=50.6
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCeeEEeccccchhhHHHHHhhcCCCCc
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~~~~v~~i~gDi~~~~~~~~l~~~~~~~~~ 120 (179)
++++||=.|+ +|..-..+++++-. .+..|+++|.++.. .++.++++|+++.+...++.+ .+
T Consensus 18 ~~~~vlVtGa-tG~iG~~l~~~L~~-----------~G~~V~~~~r~~~~--~~~~~~~~Dl~d~~~~~~~~~-----~~ 78 (347)
T 4id9_A 18 GSHMILVTGS-AGRVGRAVVAALRT-----------QGRTVRGFDLRPSG--TGGEEVVGSLEDGQALSDAIM-----GV 78 (347)
T ss_dssp ---CEEEETT-TSHHHHHHHHHHHH-----------TTCCEEEEESSCCS--SCCSEEESCTTCHHHHHHHHT-----TC
T ss_pred CCCEEEEECC-CChHHHHHHHHHHh-----------CCCEEEEEeCCCCC--CCccEEecCcCCHHHHHHHHh-----CC
Confidence 4567887774 57777777666532 14689999988754 688899999999876655542 68
Q ss_pred cEEeeCCCCCC
Q 030299 121 DLVVCDGAPDV 131 (179)
Q Consensus 121 D~VlsD~~~~~ 131 (179)
|+|++.+++..
T Consensus 79 d~vih~A~~~~ 89 (347)
T 4id9_A 79 SAVLHLGAFMS 89 (347)
T ss_dssp SEEEECCCCCC
T ss_pred CEEEECCcccC
Confidence 99999876543
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=92.75 E-value=0.76 Score=39.73 Aligned_cols=71 Identities=14% Similarity=0.100 Sum_probs=50.1
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------C-----------CCCeeEEec
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P-----------IEGVIQVQG 100 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------~-----------~~~v~~i~g 100 (179)
.+..+||=||.|-|+....+++. + ..+|+.||+.|.- + .++++.+.+
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh-~-------------~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~ 269 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKL-K-------------PKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIE 269 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTT-C-------------CSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEES
T ss_pred CCCCeEEEECCCcHHHHHHHHhc-C-------------CceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehH
Confidence 34679999999999999988764 3 3689999999830 1 135777888
Q ss_pred cccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 101 DITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 101 Di~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
|....- ++..+ .+++||+|+.|..
T Consensus 270 Da~~fl--~~~~~--~~~~yDvIIvDl~ 293 (381)
T 3c6k_A 270 DCIPVL--KRYAK--EGREFDYVINDLT 293 (381)
T ss_dssp CHHHHH--HHHHH--HTCCEEEEEEECC
T ss_pred HHHHHH--Hhhhh--ccCceeEEEECCC
Confidence 877631 11111 1357999999974
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=92.44 E-value=0.19 Score=44.75 Aligned_cols=71 Identities=17% Similarity=0.128 Sum_probs=47.8
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------C---CCCeeEEeccccchhh------
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P---IEGVIQVQGDITNART------ 107 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~---~~~v~~i~gDi~~~~~------ 107 (179)
-+|+||.||.||++.-+.+. + .-.|.|+|+.+.. . .++...+.+||++...
T Consensus 89 ~~viDLFaG~GGlslG~~~a-G-------------~~~v~avE~d~~A~~ty~~N~~~~p~~~~~~~DI~~i~~~~~~~~ 154 (482)
T 3me5_A 89 FRFIDLFAGIGGIRRGFESI-G-------------GQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIRDITLSHQEGV 154 (482)
T ss_dssp EEEEEESCTTSHHHHHHHTT-T-------------EEEEEEECCCHHHHHHHHHHSCCCTTTCEEESCTHHHHCTTCTTS
T ss_pred ceEEEecCCccHHHHHHHHC-C-------------CEEEEEEeCCHHHHHHHHHhcccCCCcceeccchhhhhhcccccc
Confidence 58999999999999988653 3 2358999999842 1 2566677899987642
Q ss_pred -----HHHHHhhcCCCCccEEeeCCCC
Q 030299 108 -----AEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 108 -----~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
.+.+.... ..+|+|+..-+|
T Consensus 155 ~~~~~~~~i~~~~--~~~Dvl~gGpPC 179 (482)
T 3me5_A 155 SDEAAAEHIRQHI--PEHDVLLAGFPC 179 (482)
T ss_dssp CHHHHHHHHHHHS--CCCSEEEEECCC
T ss_pred chhhHHhhhhhcC--CCCCEEEecCCC
Confidence 11222223 358998875543
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=92.40 E-value=0.63 Score=37.22 Aligned_cols=80 Identities=13% Similarity=0.090 Sum_probs=52.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCeeEEeccccchhhHHHHHhhcC--C
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFD--G 117 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~~~~v~~i~gDi~~~~~~~~l~~~~~--~ 117 (179)
.++++||=-|++.| .-..+++++.. .+..|+.+|.++......+.++++|+++.+..+++.+... -
T Consensus 12 ~~~k~vlVTGas~G-IG~aia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 79 (269)
T 3vtz_A 12 FTDKVAIVTGGSSG-IGLAVVDALVR-----------YGAKVVSVSLDEKSDVNVSDHFKIDVTNEEEVKEAVEKTTKKY 79 (269)
T ss_dssp TTTCEEEESSTTSH-HHHHHHHHHHH-----------TTCEEEEEESCC--CTTSSEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCH-HHHHHHHHHHH-----------CCCEEEEEeCCchhccCceeEEEecCCCHHHHHHHHHHHHHHc
Confidence 35778888887655 44444444421 1578999998875544567888999999876555554321 1
Q ss_pred CCccEEeeCCCCCC
Q 030299 118 CKADLVVCDGAPDV 131 (179)
Q Consensus 118 ~~~D~VlsD~~~~~ 131 (179)
+++|+|+++.+...
T Consensus 80 g~iD~lv~nAg~~~ 93 (269)
T 3vtz_A 80 GRIDILVNNAGIEQ 93 (269)
T ss_dssp SCCCEEEECCCCCC
T ss_pred CCCCEEEECCCcCC
Confidence 36999999887543
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=92.15 E-value=0.13 Score=41.45 Aligned_cols=34 Identities=15% Similarity=0.139 Sum_probs=29.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~ 88 (179)
++|+.|||..||.|..+..+.+. + -+++|+|+++
T Consensus 211 ~~~~~vlD~f~GsGtt~~~a~~~-g--------------r~~ig~e~~~ 244 (260)
T 1g60_A 211 NPNDLVLDCFMGSGTTAIVAKKL-G--------------RNFIGCDMNA 244 (260)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHT-T--------------CEEEEEESCH
T ss_pred CCCCEEEECCCCCCHHHHHHHHc-C--------------CeEEEEeCCH
Confidence 78999999999999988877654 3 5899999987
|
| >1vpt_A VP39; RNA CAP, poly(A) polymerase, methyltransferase; HET: SAM; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1vp3_A* | Back alignment and structure |
|---|
Probab=92.10 E-value=2.4 Score=36.03 Aligned_cols=77 Identities=18% Similarity=0.232 Sum_probs=54.1
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC----CCCCCeeEEeccccchhhHHHHHhhcC
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM----APIEGVIQVQGDITNARTAEVVIRHFD 116 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~----~~~~~v~~i~gDi~~~~~~~~l~~~~~ 116 (179)
+|..|+=+|+|||.+..+|.+..+. -+...+.+.+|..+. ++.++++.++. .++.+..+.+.+.+.
T Consensus 75 ~g~~VVYaGsAPG~HI~fL~~lF~~---------l~~~lkwvLiDp~~f~~~Le~~~ni~li~~-ffde~~i~~l~~~~~ 144 (348)
T 1vpt_A 75 DGATVVYIGSAPGTHIRYLRDHFYN---------LGVIIKWMLIDGRHHDPILNGLRDVTLVTR-FVDEEYLRSIKKQLH 144 (348)
T ss_dssp TTCEEEEESCSSCHHHHHHHHHHHH---------TTCCCEEEEEESSCCCGGGTTCTTEEEEEC-CCCHHHHHHHHHHHT
T ss_pred CCCeEEEeCcCCcchHHHHHHHhhh---------cCCceEEEEECCCchhhhhcCCCcEEeehh-hcCHHHHHHHHHHhc
Confidence 4679999999999999999986641 011368899999996 35678866654 666666666666655
Q ss_pred CCCccE-EeeCCCC
Q 030299 117 GCKADL-VVCDGAP 129 (179)
Q Consensus 117 ~~~~D~-VlsD~~~ 129 (179)
+. ++ .+||...
T Consensus 145 ~~--~vLfISDIRS 156 (348)
T 1vpt_A 145 PS--KIILISDVAS 156 (348)
T ss_dssp TS--CEEEEECCCC
T ss_pred CC--CEEEEEeccc
Confidence 43 54 4788864
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=91.95 E-value=0.42 Score=41.12 Aligned_cols=82 Identities=13% Similarity=0.015 Sum_probs=45.3
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCC--CCCCCCCCCCCCeEEEEeCCCCC------CCC-----------------Cee
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPA--KLSPDSREGDLPLIVAIDLQPMA------PIE-----------------GVI 96 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~--~~~~~~~~~~~~~VvavD~~~~~------~~~-----------------~v~ 96 (179)
+.+|+|||||+|..|..+...+-... +........+...|.-.|+-... .++ +-.
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 57899999999999997743221000 00000001236788888976642 011 112
Q ss_pred EEeccccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 97 QVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 97 ~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
|+.|...+.-. ..+++..+|+|+|..+
T Consensus 133 f~~gvpgSFy~-----rlfP~~S~d~v~Ss~a 159 (374)
T 3b5i_A 133 FVAGVPGSFYR-----RLFPARTIDFFHSAFS 159 (374)
T ss_dssp EEEEEESCTTS-----CCSCTTCEEEEEEESC
T ss_pred EEEecChhhhc-----ccCCCcceEEEEecce
Confidence 44444333211 1267789999999764
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=91.73 E-value=1 Score=34.26 Aligned_cols=71 Identities=20% Similarity=0.139 Sum_probs=49.8
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC---CCCeeEEeccccchhhHHHHHhhcCCCC
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP---IEGVIQVQGDITNARTAEVVIRHFDGCK 119 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~---~~~v~~i~gDi~~~~~~~~l~~~~~~~~ 119 (179)
++||=.|+ +|+.-..+++++.. .+..|++++.++... ..++.++++|+++.+...++.+ .
T Consensus 5 ~~ilItGa-tG~iG~~l~~~L~~-----------~g~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-----~ 67 (227)
T 3dhn_A 5 KKIVLIGA-SGFVGSALLNEALN-----------RGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEVCK-----G 67 (227)
T ss_dssp CEEEEETC-CHHHHHHHHHHHHT-----------TTCEEEEECSCGGGCCCCCTTEEEECCCTTCHHHHHHHHT-----T
T ss_pred CEEEEEcC-CchHHHHHHHHHHH-----------CCCEEEEEEcCcccchhccCceEEEEecCCCHHHHHHHhc-----C
Confidence 46776664 56677777666532 247899999887431 2689999999999876655542 5
Q ss_pred ccEEeeCCCCC
Q 030299 120 ADLVVCDGAPD 130 (179)
Q Consensus 120 ~D~VlsD~~~~ 130 (179)
+|+|++..++.
T Consensus 68 ~d~vi~~a~~~ 78 (227)
T 3dhn_A 68 ADAVISAFNPG 78 (227)
T ss_dssp CSEEEECCCC-
T ss_pred CCEEEEeCcCC
Confidence 89999987654
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=91.63 E-value=0.19 Score=42.76 Aligned_cols=73 Identities=18% Similarity=0.141 Sum_probs=47.2
Q ss_pred CCCCCEEEEEccCC-ChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCeeEEeccccchhh-HHHHH
Q 030299 39 FEGVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNART-AEVVI 112 (179)
Q Consensus 39 l~~g~~VlDLgagp-Gg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----~~~~v~~i~gDi~~~~~-~~~l~ 112 (179)
+++|++||-+|||+ |..+..+++..+ ..+|+++|.++.+ .--|+..+ |..+.+. .+.+.
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlak~~G-------------a~~Vi~~~~~~~~~~~a~~lGa~~i--~~~~~~~~~~~~~ 247 (398)
T 2dph_A 183 VKPGSHVYIAGAGPVGRCAAAGARLLG-------------AACVIVGDQNPERLKLLSDAGFETI--DLRNSAPLRDQID 247 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHT-------------CSEEEEEESCHHHHHHHHTTTCEEE--ETTSSSCHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-------------CCEEEEEcCCHHHHHHHHHcCCcEE--cCCCcchHHHHHH
Confidence 47899999999977 777777777765 2489999988732 11255433 3333332 34444
Q ss_pred hhcCCCCccEEeeC
Q 030299 113 RHFDGCKADLVVCD 126 (179)
Q Consensus 113 ~~~~~~~~D~VlsD 126 (179)
+...+.++|+|+-.
T Consensus 248 ~~~~g~g~Dvvid~ 261 (398)
T 2dph_A 248 QILGKPEVDCGVDA 261 (398)
T ss_dssp HHHSSSCEEEEEEC
T ss_pred HHhCCCCCCEEEEC
Confidence 44444579999854
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=91.47 E-value=1.2 Score=36.62 Aligned_cols=76 Identities=12% Similarity=-0.001 Sum_probs=51.4
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC------------C-----CCCCeeEEecccc
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------------A-----PIEGVIQVQGDIT 103 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~------------~-----~~~~v~~i~gDi~ 103 (179)
.+++||=.| |+|+.-..+++++.. .+.+..|+++|.++. . ...++.++++|++
T Consensus 9 ~~~~vlVTG-atG~IG~~l~~~L~~---------~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 78 (362)
T 3sxp_A 9 ENQTILITG-GAGFVGSNLAFHFQE---------NHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADIN 78 (362)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHH---------HCTTSEEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTT
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHh---------hCCCCeEEEEECCCccccccccchhhhhhhhhccccCceEEECCCC
Confidence 356888777 567777776666531 001578999997543 1 1236789999999
Q ss_pred chhhHHHHHhhcCCCCccEEeeCCCCC
Q 030299 104 NARTAEVVIRHFDGCKADLVVCDGAPD 130 (179)
Q Consensus 104 ~~~~~~~l~~~~~~~~~D~VlsD~~~~ 130 (179)
+.+..+++ ...++|+|++.++..
T Consensus 79 d~~~~~~~----~~~~~D~vih~A~~~ 101 (362)
T 3sxp_A 79 NPLDLRRL----EKLHFDYLFHQAAVS 101 (362)
T ss_dssp CHHHHHHH----TTSCCSEEEECCCCC
T ss_pred CHHHHHHh----hccCCCEEEECCccC
Confidence 98776655 124799999988743
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=91.21 E-value=1.6 Score=33.88 Aligned_cols=79 Identities=14% Similarity=0.120 Sum_probs=52.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCeeEEeccccchhhHHHHHhh----c
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRH----F 115 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~~~~v~~i~gDi~~~~~~~~l~~~----~ 115 (179)
..+++||=.|++ ||.-..+++++.. .+..|+.+|.++......+.++++|+++.+..+++.+. +
T Consensus 5 ~~~k~vlVTGas-~gIG~~ia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 72 (241)
T 1dhr_A 5 GEARRVLVYGGR-GALGSRCVQAFRA-----------RNWWVASIDVVENEEASASVIVKMTDSFTEQADQVTAEVGKLL 72 (241)
T ss_dssp -CCCEEEEETTT-SHHHHHHHHHHHT-----------TTCEEEEEESSCCTTSSEEEECCCCSCHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCC-cHHHHHHHHHHHh-----------CCCEEEEEeCChhhccCCcEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 356778877765 4555556665532 25789999988754333466779999998765555443 3
Q ss_pred CCCCccEEeeCCCCC
Q 030299 116 DGCKADLVVCDGAPD 130 (179)
Q Consensus 116 ~~~~~D~VlsD~~~~ 130 (179)
..+++|+|++..+..
T Consensus 73 ~~g~iD~lv~~Ag~~ 87 (241)
T 1dhr_A 73 GDQKVDAILCVAGGW 87 (241)
T ss_dssp TTCCEEEEEECCCCC
T ss_pred CCCCCCEEEEccccc
Confidence 214799999998754
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=91.15 E-value=0.45 Score=37.81 Aligned_cols=71 Identities=15% Similarity=0.214 Sum_probs=51.8
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCeeEEeccccchhhHHHHHhhcCCCCcc
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKAD 121 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D 121 (179)
+++||=.| + |.....+++++-. .+..|++++.++....++++++++|+++.+...++.+ +.+|
T Consensus 3 ~~~ilVtG-a-G~iG~~l~~~L~~-----------~g~~V~~~~r~~~~~~~~~~~~~~Dl~d~~~~~~~~~----~~~d 65 (286)
T 3gpi_A 3 LSKILIAG-C-GDLGLELARRLTA-----------QGHEVTGLRRSAQPMPAGVQTLIADVTRPDTLASIVH----LRPE 65 (286)
T ss_dssp CCCEEEEC-C-SHHHHHHHHHHHH-----------TTCCEEEEECTTSCCCTTCCEEECCTTCGGGCTTGGG----GCCS
T ss_pred CCcEEEEC-C-CHHHHHHHHHHHH-----------CCCEEEEEeCCccccccCCceEEccCCChHHHHHhhc----CCCC
Confidence 35788888 4 8888888777632 1468999998875545789999999999876444332 2599
Q ss_pred EEeeCCCC
Q 030299 122 LVVCDGAP 129 (179)
Q Consensus 122 ~VlsD~~~ 129 (179)
+|++-+++
T Consensus 66 ~vih~a~~ 73 (286)
T 3gpi_A 66 ILVYCVAA 73 (286)
T ss_dssp EEEECHHH
T ss_pred EEEEeCCC
Confidence 99997754
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=90.88 E-value=1.3 Score=35.94 Aligned_cols=75 Identities=23% Similarity=0.251 Sum_probs=53.0
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC------CCCCCeeEEeccccchhhHHHHHhhc
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------APIEGVIQVQGDITNARTAEVVIRHF 115 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~------~~~~~v~~i~gDi~~~~~~~~l~~~~ 115 (179)
+++||=.|| +|+.-..+++++.. .+..|++++..+. ..+.++.++.+|+++.+...++.+..
T Consensus 20 ~~~vlVTGa-sG~iG~~l~~~L~~-----------~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~ 87 (330)
T 2pzm_A 20 HMRILITGG-AGCLGSNLIEHWLP-----------QGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSF 87 (330)
T ss_dssp CCEEEEETT-TSHHHHHHHHHHGG-----------GTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCEEEEECC-CCHHHHHHHHHHHH-----------CCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhc
Confidence 568888775 46676777666542 1468999998543 22368999999999987666655433
Q ss_pred CCCCccEEeeCCCCCC
Q 030299 116 DGCKADLVVCDGAPDV 131 (179)
Q Consensus 116 ~~~~~D~VlsD~~~~~ 131 (179)
++|+|++.++...
T Consensus 88 ---~~D~vih~A~~~~ 100 (330)
T 2pzm_A 88 ---KPTHVVHSAAAYK 100 (330)
T ss_dssp ---CCSEEEECCCCCS
T ss_pred ---CCCEEEECCccCC
Confidence 6899999887543
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=90.75 E-value=1.2 Score=35.22 Aligned_cols=71 Identities=24% Similarity=0.308 Sum_probs=51.8
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC-CCCeeEEeccccchhhHHHHHhhcCCCCcc
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-IEGVIQVQGDITNARTAEVVIRHFDGCKAD 121 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~-~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D 121 (179)
++||=.|| +|+.-..+++++.. ....|+++|.++... ..++.++++|+++.+...++.+ .+|
T Consensus 4 k~vlVTGa-sg~IG~~la~~L~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-----~~D 66 (267)
T 3rft_A 4 KRLLVTGA-AGQLGRVMRERLAP-----------MAEILRLADLSPLDPAGPNEECVQCDLADANAVNAMVA-----GCD 66 (267)
T ss_dssp EEEEEEST-TSHHHHHHHHHTGG-----------GEEEEEEEESSCCCCCCTTEEEEECCTTCHHHHHHHHT-----TCS
T ss_pred CEEEEECC-CCHHHHHHHHHHHh-----------cCCEEEEEecCCccccCCCCEEEEcCCCCHHHHHHHHc-----CCC
Confidence 35665564 57777777777642 146899999887543 3579999999999887666553 689
Q ss_pred EEeeCCCCC
Q 030299 122 LVVCDGAPD 130 (179)
Q Consensus 122 ~VlsD~~~~ 130 (179)
+|++.++..
T Consensus 67 ~vi~~Ag~~ 75 (267)
T 3rft_A 67 GIVHLGGIS 75 (267)
T ss_dssp EEEECCSCC
T ss_pred EEEECCCCc
Confidence 999998764
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=90.50 E-value=5.4 Score=31.97 Aligned_cols=75 Identities=13% Similarity=0.136 Sum_probs=55.4
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCeeEEeccccchhhHHHHHhhcC
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHFD 116 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----~~~~v~~i~gDi~~~~~~~~l~~~~~ 116 (179)
.|+++|=-|++.|.-.. +++++.. ...+|+.+|.++.. ...++..+++|+++.+..+++.+.+.
T Consensus 10 ~GK~alVTGas~GIG~a-ia~~la~-----------~Ga~Vv~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g 77 (242)
T 4b79_A 10 AGQQVLVTGGSSGIGAA-IAMQFAE-----------LGAEVVALGLDADGVHAPRHPRIRREELDITDSQRLQRLFEALP 77 (242)
T ss_dssp TTCEEEEETTTSHHHHH-HHHHHHH-----------TTCEEEEEESSTTSTTSCCCTTEEEEECCTTCHHHHHHHHHHCS
T ss_pred CCCEEEEeCCCCHHHHH-HHHHHHH-----------CCCEEEEEeCCHHHHhhhhcCCeEEEEecCCCHHHHHHHHHhcC
Confidence 58888888888765443 3343321 25799999988742 23578899999999998888888874
Q ss_pred CCCccEEeeCCCC
Q 030299 117 GCKADLVVCDGAP 129 (179)
Q Consensus 117 ~~~~D~VlsD~~~ 129 (179)
+.|+++.+...
T Consensus 78 --~iDiLVNNAGi 88 (242)
T 4b79_A 78 --RLDVLVNNAGI 88 (242)
T ss_dssp --CCSEEEECCCC
T ss_pred --CCCEEEECCCC
Confidence 69999998764
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=90.36 E-value=1.6 Score=35.17 Aligned_cols=75 Identities=9% Similarity=-0.045 Sum_probs=53.0
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC-----------CCCeeEEeccccchhhHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------IEGVIQVQGDITNARTAE 109 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~-----------~~~v~~i~gDi~~~~~~~ 109 (179)
.+++||=.| |+|+.-..+++++.. .+..|+++|.++... ..++.++++|+++.+..+
T Consensus 4 ~~~~vlVTG-atG~iG~~l~~~L~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~ 71 (341)
T 3enk_A 4 TKGTILVTG-GAGYIGSHTAVELLA-----------HGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALA 71 (341)
T ss_dssp SSCEEEEET-TTSHHHHHHHHHHHH-----------TTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHH
T ss_pred CCcEEEEec-CCcHHHHHHHHHHHH-----------CCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHH
Confidence 456777666 557777777666532 147899999876431 247889999999988776
Q ss_pred HHHhhcCCCCccEEeeCCCCC
Q 030299 110 VVIRHFDGCKADLVVCDGAPD 130 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~~~ 130 (179)
++.+. ..+|+|++.++..
T Consensus 72 ~~~~~---~~~d~vih~A~~~ 89 (341)
T 3enk_A 72 RIFDA---HPITAAIHFAALK 89 (341)
T ss_dssp HHHHH---SCCCEEEECCCCC
T ss_pred HHHhc---cCCcEEEECcccc
Confidence 66653 3699999988653
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=90.28 E-value=0.6 Score=40.34 Aligned_cols=80 Identities=18% Similarity=0.033 Sum_probs=46.3
Q ss_pred CCEEEEEccCCChHHHHHHHHh----CCCCCC--CCCCCCCCCCeEEEEeCCCCC--------C------------CCCe
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKL----YLPAKL--SPDSREGDLPLIVAIDLQPMA--------P------------IEGV 95 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~----~~~~~~--~~~~~~~~~~~VvavD~~~~~--------~------------~~~v 95 (179)
.-+|+|||||.|..|..+...+ ...-+. .+ ...+...|+..|+-... + ..+.
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~--~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~ 130 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNE--LERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGS 130 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC------------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTS
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccC--CCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCc
Confidence 4689999999999999777652 110000 00 01235678888876421 0 0123
Q ss_pred eEEeccccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 96 IQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 96 ~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
.|+.|.....-. ..|+...+|+|.|..+
T Consensus 131 ~f~~gvpgSFy~-----rlfp~~S~d~v~Ss~a 158 (384)
T 2efj_A 131 CLIGAMPGSFYS-----RLFPEESMHFLHSCYC 158 (384)
T ss_dssp EEEEECCSCTTS-----CCSCTTCEEEEEEESC
T ss_pred eEEEecchhhhh-----ccCCCCceEEEEecce
Confidence 466665544211 1267789999999664
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=89.99 E-value=2.3 Score=33.20 Aligned_cols=79 Identities=11% Similarity=-0.075 Sum_probs=51.4
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCeeEEeccccchhhHHHHHhhcC--CC
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFD--GC 118 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~~~~v~~i~gDi~~~~~~~~l~~~~~--~~ 118 (179)
.+++||=.|++ ||.-..+++++.. .+.+|+.+|.++.....++.++.+|+++.+..+++.+... -+
T Consensus 6 ~~k~vlVTGas-~giG~~ia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g 73 (250)
T 2fwm_X 6 SGKNVWVTGAG-KGIGYATALAFVE-----------AGAKVTGFDQAFTQEQYPFATEVMDVADAAQVAQVCQRLLAETE 73 (250)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHH-----------TTCEEEEEESCCCSSCCSSEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHH-----------CCCEEEEEeCchhhhcCCceEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 35678877866 5555555554431 1478999998764322358888999999876555544221 13
Q ss_pred CccEEeeCCCCCC
Q 030299 119 KADLVVCDGAPDV 131 (179)
Q Consensus 119 ~~D~VlsD~~~~~ 131 (179)
++|+|+++.+...
T Consensus 74 ~id~lv~~Ag~~~ 86 (250)
T 2fwm_X 74 RLDALVNAAGILR 86 (250)
T ss_dssp CCCEEEECCCCCC
T ss_pred CCCEEEECCCcCC
Confidence 6999999886543
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=89.60 E-value=1.4 Score=35.36 Aligned_cols=74 Identities=16% Similarity=0.007 Sum_probs=51.0
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----------CCCeeEEeccccchhhHHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----------IEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~----------~~~v~~i~gDi~~~~~~~~l 111 (179)
+++||=.|+ +|+.-..+++++.. .+..|+++|.++... ..++.++++|+++.+...++
T Consensus 3 ~~~vlVtGa-tG~iG~~l~~~L~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 70 (345)
T 2z1m_A 3 GKRALITGI-RGQDGAYLAKLLLE-----------KGYEVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRT 70 (345)
T ss_dssp CCEEEEETT-TSHHHHHHHHHHHH-----------TTCEEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHH
T ss_pred CCEEEEECC-CChHHHHHHHHHHH-----------CCCEEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHH
Confidence 467777775 57777776665532 146899999876321 13788999999998766665
Q ss_pred HhhcCCCCccEEeeCCCCC
Q 030299 112 IRHFDGCKADLVVCDGAPD 130 (179)
Q Consensus 112 ~~~~~~~~~D~VlsD~~~~ 130 (179)
.+.. .+|+|++.++..
T Consensus 71 ~~~~---~~d~vih~A~~~ 86 (345)
T 2z1m_A 71 IEKV---QPDEVYNLAAQS 86 (345)
T ss_dssp HHHH---CCSEEEECCCCC
T ss_pred HHhc---CCCEEEECCCCc
Confidence 5432 589999988753
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=89.54 E-value=1.6 Score=35.54 Aligned_cols=73 Identities=23% Similarity=0.159 Sum_probs=51.3
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC---------CCCeeEEeccccchhhHHHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP---------IEGVIQVQGDITNARTAEVVI 112 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~---------~~~v~~i~gDi~~~~~~~~l~ 112 (179)
+++||=.| |+|+....+++++.. .+..|++++.++... ..++.++++|+++.+...++.
T Consensus 9 ~~~vlVtG-atG~iG~~l~~~L~~-----------~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 76 (357)
T 1rkx_A 9 GKRVFVTG-HTGFKGGWLSLWLQT-----------MGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESI 76 (357)
T ss_dssp TCEEEEET-TTSHHHHHHHHHHHH-----------TTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHH
T ss_pred CCEEEEEC-CCchHHHHHHHHHHh-----------CCCeEEEEeCCCcccchhhHhhccCCceEEEEccccCHHHHHHHH
Confidence 56788777 467777777665532 146899999876421 247889999999987666655
Q ss_pred hhcCCCCccEEeeCCCC
Q 030299 113 RHFDGCKADLVVCDGAP 129 (179)
Q Consensus 113 ~~~~~~~~D~VlsD~~~ 129 (179)
+.. .+|+|++.++.
T Consensus 77 ~~~---~~d~vih~A~~ 90 (357)
T 1rkx_A 77 REF---QPEIVFHMAAQ 90 (357)
T ss_dssp HHH---CCSEEEECCSC
T ss_pred Hhc---CCCEEEECCCC
Confidence 432 58999998764
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=89.52 E-value=2.1 Score=33.88 Aligned_cols=79 Identities=22% Similarity=0.079 Sum_probs=52.0
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-CCCCeeEEeccccchhhHHHHHhhcC--C
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-PIEGVIQVQGDITNARTAEVVIRHFD--G 117 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-~~~~v~~i~gDi~~~~~~~~l~~~~~--~ 117 (179)
.+++||=-|++ ||.-..+++++.. .+..|+.+|.++.. ....+.++++|+++.+..+++.+... -
T Consensus 27 ~~k~vlVTGas-~gIG~aia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 94 (260)
T 3un1_A 27 QQKVVVITGAS-QGIGAGLVRAYRD-----------RNYRVVATSRSIKPSADPDIHTVAGDISKPETADRIVREGIERF 94 (260)
T ss_dssp TCCEEEESSCS-SHHHHHHHHHHHH-----------TTCEEEEEESSCCCCSSTTEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHH-----------CCCEEEEEeCChhhcccCceEEEEccCCCHHHHHHHHHHHHHHC
Confidence 46678877766 4555555554432 15789999987643 23478899999999876555544321 1
Q ss_pred CCccEEeeCCCCCC
Q 030299 118 CKADLVVCDGAPDV 131 (179)
Q Consensus 118 ~~~D~VlsD~~~~~ 131 (179)
+++|+|+++.+...
T Consensus 95 g~iD~lv~nAg~~~ 108 (260)
T 3un1_A 95 GRIDSLVNNAGVFL 108 (260)
T ss_dssp SCCCEEEECCCCCC
T ss_pred CCCCEEEECCCCCC
Confidence 36999999886543
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=89.44 E-value=2.9 Score=33.37 Aligned_cols=76 Identities=13% Similarity=0.054 Sum_probs=54.5
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------C-CCCeeEEeccccchhhHHHHHh
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P-IEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~-~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
+|++||=-|++ ||.-..+++++.. .+.+|+.+|.++.. . ..++.++++|+++.+..+++.+
T Consensus 15 ~gk~vlVTGas-~gIG~~~a~~L~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~ 82 (291)
T 3rd5_A 15 AQRTVVITGAN-SGLGAVTARELAR-----------RGATVIMAVRDTRKGEAAARTMAGQVEVRELDLQDLSSVRRFAD 82 (291)
T ss_dssp TTCEEEEECCS-SHHHHHHHHHHHH-----------TTCEEEEEESCHHHHHHHHTTSSSEEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHH-----------CCCEEEEEECCHHHHHHHHHHhcCCeeEEEcCCCCHHHHHHHHH
Confidence 46788877877 5555555555432 14789999987631 1 2368899999999988888887
Q ss_pred hcCCCCccEEeeCCCCC
Q 030299 114 HFDGCKADLVVCDGAPD 130 (179)
Q Consensus 114 ~~~~~~~D~VlsD~~~~ 130 (179)
.+ ..+|+|+++.+..
T Consensus 83 ~~--~~iD~lv~nAg~~ 97 (291)
T 3rd5_A 83 GV--SGADVLINNAGIM 97 (291)
T ss_dssp TC--CCEEEEEECCCCC
T ss_pred hc--CCCCEEEECCcCC
Confidence 66 4799999998753
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=89.41 E-value=2.2 Score=34.64 Aligned_cols=74 Identities=12% Similarity=0.056 Sum_probs=51.0
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCC-----CeEEEEeCCCCCC---CCCeeEEeccccchhhHHHHHhh
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDL-----PLIVAIDLQPMAP---IEGVIQVQGDITNARTAEVVIRH 114 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~-----~~VvavD~~~~~~---~~~v~~i~gDi~~~~~~~~l~~~ 114 (179)
++||=.| |+|.....+++++-.. . ..|++++..+... ..+++++++|+++.+...++.+.
T Consensus 2 ~~vlVtG-atG~iG~~l~~~L~~~-----------g~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 69 (364)
T 2v6g_A 2 SVALIVG-VTGIIGNSLAEILPLA-----------DTPGGPWKVYGVARRTRPAWHEDNPINYVQCDISDPDDSQAKLSP 69 (364)
T ss_dssp EEEEEET-TTSHHHHHHHHHTTST-----------TCTTCSEEEEEEESSCCCSCCCSSCCEEEECCTTSHHHHHHHHTT
T ss_pred CEEEEEC-CCcHHHHHHHHHHHhC-----------CCCCCceEEEEEeCCCCccccccCceEEEEeecCCHHHHHHHHhc
Confidence 4566555 4588888888876421 2 5899999876432 35789999999998765555432
Q ss_pred cCCCCccEEeeCCCCC
Q 030299 115 FDGCKADLVVCDGAPD 130 (179)
Q Consensus 115 ~~~~~~D~VlsD~~~~ 130 (179)
. ..+|+|++.++..
T Consensus 70 ~--~~~d~vih~a~~~ 83 (364)
T 2v6g_A 70 L--TDVTHVFYVTWAN 83 (364)
T ss_dssp C--TTCCEEEECCCCC
T ss_pred C--CCCCEEEECCCCC
Confidence 2 1399999987643
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=89.40 E-value=5 Score=29.46 Aligned_cols=71 Identities=13% Similarity=0.026 Sum_probs=49.2
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCeeEEeccccchhhHHHHHhhcCCC
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIRHFDGC 118 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~----~~~v~~i~gDi~~~~~~~~l~~~~~~~ 118 (179)
++||=.|+ +|+.-..+++++.. ....|++++.++... ..+++++++|+++.+...++.+
T Consensus 4 ~~ilVtGa-tG~iG~~l~~~l~~-----------~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----- 66 (206)
T 1hdo_A 4 KKIAIFGA-TGQTGLTTLAQAVQ-----------AGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVA----- 66 (206)
T ss_dssp CEEEEEST-TSHHHHHHHHHHHH-----------TTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHT-----
T ss_pred CEEEEEcC-CcHHHHHHHHHHHH-----------CCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHc-----
Confidence 56777765 56777766665532 146899999876421 3588999999999876555442
Q ss_pred CccEEeeCCCCC
Q 030299 119 KADLVVCDGAPD 130 (179)
Q Consensus 119 ~~D~VlsD~~~~ 130 (179)
.+|+|++..++.
T Consensus 67 ~~d~vi~~a~~~ 78 (206)
T 1hdo_A 67 GQDAVIVLLGTR 78 (206)
T ss_dssp TCSEEEECCCCT
T ss_pred CCCEEEECccCC
Confidence 479999987654
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=89.39 E-value=1.5 Score=35.02 Aligned_cols=77 Identities=18% Similarity=0.154 Sum_probs=50.8
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCeeEEeccccchhhHHHHHhhcCCC
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGC 118 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~~~~v~~i~gDi~~~~~~~~l~~~~~~~ 118 (179)
..+..+||=.| |+|+....+++++.. .+..|++++.++.....++.++.+|+++.+...++.+. .
T Consensus 9 ~~~~~~vlVTG-atG~iG~~l~~~L~~-----------~G~~V~~~~r~~~~~~l~~~~~~~Dl~d~~~~~~~~~~---~ 73 (321)
T 2pk3_A 9 HHGSMRALITG-VAGFVGKYLANHLTE-----------QNVEVFGTSRNNEAKLPNVEMISLDIMDSQRVKKVISD---I 73 (321)
T ss_dssp ----CEEEEET-TTSHHHHHHHHHHHH-----------TTCEEEEEESCTTCCCTTEEEEECCTTCHHHHHHHHHH---H
T ss_pred ccCcceEEEEC-CCChHHHHHHHHHHH-----------CCCEEEEEecCCccccceeeEEECCCCCHHHHHHHHHh---c
Confidence 35566777666 457777777666532 14689999987643112788999999998776665543 3
Q ss_pred CccEEeeCCCCC
Q 030299 119 KADLVVCDGAPD 130 (179)
Q Consensus 119 ~~D~VlsD~~~~ 130 (179)
++|+|++.++..
T Consensus 74 ~~d~vih~A~~~ 85 (321)
T 2pk3_A 74 KPDYIFHLAAKS 85 (321)
T ss_dssp CCSEEEECCSCC
T ss_pred CCCEEEEcCccc
Confidence 589999988653
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=88.99 E-value=4 Score=30.34 Aligned_cols=65 Identities=17% Similarity=0.245 Sum_probs=47.9
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCeeEEeccccchhhHHHHHhhcCCCCccEE
Q 030299 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLV 123 (179)
Q Consensus 44 ~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~V 123 (179)
+||=.|++ |+.-..+++++. . +..|++++.++. .+.+|+++.+..+++.+.+ +++|.|
T Consensus 5 ~vlVtGas-g~iG~~~~~~l~-~-----------g~~V~~~~r~~~-------~~~~D~~~~~~~~~~~~~~--~~~d~v 62 (202)
T 3d7l_A 5 KILLIGAS-GTLGSAVKERLE-K-----------KAEVITAGRHSG-------DVTVDITNIDSIKKMYEQV--GKVDAI 62 (202)
T ss_dssp EEEEETTT-SHHHHHHHHHHT-T-----------TSEEEEEESSSS-------SEECCTTCHHHHHHHHHHH--CCEEEE
T ss_pred EEEEEcCC-cHHHHHHHHHHH-C-----------CCeEEEEecCcc-------ceeeecCCHHHHHHHHHHh--CCCCEE
Confidence 67877864 677777777664 2 578999987653 4689999988777776655 469999
Q ss_pred eeCCCCC
Q 030299 124 VCDGAPD 130 (179)
Q Consensus 124 lsD~~~~ 130 (179)
++..+..
T Consensus 63 i~~ag~~ 69 (202)
T 3d7l_A 63 VSATGSA 69 (202)
T ss_dssp EECCCCC
T ss_pred EECCCCC
Confidence 9987643
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.88 E-value=1.8 Score=33.47 Aligned_cols=77 Identities=16% Similarity=0.225 Sum_probs=49.6
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCeeEEeccccchhhHHHHHhh----cCC
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRH----FDG 117 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~~~~v~~i~gDi~~~~~~~~l~~~----~~~ 117 (179)
+++||=.|++ |+.-..+++++.. .+..|+.+|.++......+.++++|+++.+..+++.+. +..
T Consensus 3 ~k~vlITGas-~gIG~~~a~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 70 (236)
T 1ooe_A 3 SGKVIVYGGK-GALGSAILEFFKK-----------NGYTVLNIDLSANDQADSNILVDGNKNWTEQEQSILEQTASSLQG 70 (236)
T ss_dssp CEEEEEETTT-SHHHHHHHHHHHH-----------TTEEEEEEESSCCTTSSEEEECCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEECCC-cHHHHHHHHHHHH-----------CCCEEEEEecCccccccccEEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 4467777765 5555555555432 14689999988754333466779999998765554442 322
Q ss_pred CCccEEeeCCCCC
Q 030299 118 CKADLVVCDGAPD 130 (179)
Q Consensus 118 ~~~D~VlsD~~~~ 130 (179)
+.+|+|++..+..
T Consensus 71 g~id~lv~~Ag~~ 83 (236)
T 1ooe_A 71 SQVDGVFCVAGGW 83 (236)
T ss_dssp CCEEEEEECCCCC
T ss_pred CCCCEEEECCccc
Confidence 4799999988743
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.47 E-value=4.4 Score=33.02 Aligned_cols=73 Identities=16% Similarity=0.081 Sum_probs=46.9
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-------C--------CCCeeEEeccccchhh
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------P--------IEGVIQVQGDITNART 107 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-------~--------~~~v~~i~gDi~~~~~ 107 (179)
++||=.|+ +|+....+++++-. .+..|+++|.++.. . ..++.++++|+++.+.
T Consensus 2 ~~vlVtGa-tG~iG~~l~~~L~~-----------~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~ 69 (372)
T 1db3_A 2 KVALITGV-TGQDGSYLAEFLLE-----------KGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSN 69 (372)
T ss_dssp CEEEEETT-TSHHHHHHHHHHHH-----------TTCEEEEECC---------------------CCEEECCCCSSCHHH
T ss_pred CEEEEECC-CChHHHHHHHHHHH-----------CCCEEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHH
Confidence 45666664 57777776665531 14689999876421 1 1478889999999877
Q ss_pred HHHHHhhcCCCCccEEeeCCCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGAPD 130 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~~~ 130 (179)
..++.+.. .+|+|++.++..
T Consensus 70 ~~~~~~~~---~~d~vih~A~~~ 89 (372)
T 1db3_A 70 LTRILREV---QPDEVYNLGAMS 89 (372)
T ss_dssp HHHHHHHH---CCSEEEECCCCC
T ss_pred HHHHHHhc---CCCEEEECCccc
Confidence 66655432 589999988754
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=88.31 E-value=3 Score=33.01 Aligned_cols=78 Identities=12% Similarity=0.116 Sum_probs=50.9
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCeeEEeccccchhhHHHHHhhcC--CC
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFD--GC 118 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~~~~v~~i~gDi~~~~~~~~l~~~~~--~~ 118 (179)
.+++||=.|++ ||.-..+++++.. .+..|+.+|.++.. ..++.++++|+++.+..+++.+... -+
T Consensus 7 ~~k~vlVTGas-~gIG~~ia~~l~~-----------~G~~V~~~~r~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 73 (264)
T 2dtx_A 7 RDKVVIVTGAS-MGIGRAIAERFVD-----------EGSKVIDLSIHDPG-EAKYDHIECDVTNPDQVKASIDHIFKEYG 73 (264)
T ss_dssp TTCEEEEESCS-SHHHHHHHHHHHH-----------TTCEEEEEESSCCC-SCSSEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHH-----------CCCEEEEEecCccc-CCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 35678877876 4555555554421 14689999987654 3467889999999876555444221 13
Q ss_pred CccEEeeCCCCCC
Q 030299 119 KADLVVCDGAPDV 131 (179)
Q Consensus 119 ~~D~VlsD~~~~~ 131 (179)
.+|+|+++.+...
T Consensus 74 ~iD~lv~~Ag~~~ 86 (264)
T 2dtx_A 74 SISVLVNNAGIES 86 (264)
T ss_dssp CCCEEEECCCCCC
T ss_pred CCCEEEECCCCCC
Confidence 6999999886543
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=88.15 E-value=2.2 Score=35.72 Aligned_cols=70 Identities=17% Similarity=0.028 Sum_probs=50.4
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---CCCCeeEEeccccchhhHHHHHhhcCC
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---PIEGVIQVQGDITNARTAEVVIRHFDG 117 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---~~~~v~~i~gDi~~~~~~~~l~~~~~~ 117 (179)
+.++|+=||| |.....+++.+.. ...|..+|.+... ..+.+..++.|+.|.+...++.
T Consensus 15 ~~mkilvlGa--G~vG~~~~~~L~~------------~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~----- 75 (365)
T 3abi_A 15 RHMKVLILGA--GNIGRAIAWDLKD------------EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVM----- 75 (365)
T ss_dssp -CCEEEEECC--SHHHHHHHHHHTT------------TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHH-----
T ss_pred CccEEEEECC--CHHHHHHHHHHhc------------CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHH-----
Confidence 4578999998 8888888887753 4678888887632 1345677889999987655544
Q ss_pred CCccEEeeCCCC
Q 030299 118 CKADLVVCDGAP 129 (179)
Q Consensus 118 ~~~D~VlsD~~~ 129 (179)
.++|+|++-.+|
T Consensus 76 ~~~DvVi~~~p~ 87 (365)
T 3abi_A 76 KEFELVIGALPG 87 (365)
T ss_dssp TTCSEEEECCCG
T ss_pred hCCCEEEEecCC
Confidence 258999986654
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.15 E-value=2 Score=34.55 Aligned_cols=75 Identities=11% Similarity=0.011 Sum_probs=51.1
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~ 109 (179)
.++++||=.|+ +|+.-..+++++-. .+..|++++.++.. ...++.++.+|+++.+...
T Consensus 12 ~~~~~vlVTGa-tG~iG~~l~~~L~~-----------~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~ 79 (335)
T 1rpn_A 12 SMTRSALVTGI-TGQDGAYLAKLLLE-----------KGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQ 79 (335)
T ss_dssp ---CEEEEETT-TSHHHHHHHHHHHH-----------TTCEEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHH
T ss_pred ccCCeEEEECC-CChHHHHHHHHHHH-----------CCCeEEEEeCCCccccccchhhccccCceEEEECCCCCHHHHH
Confidence 46788987775 57777777665532 14689999987642 1247889999999987766
Q ss_pred HHHhhcCCCCccEEeeCCCC
Q 030299 110 VVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~~ 129 (179)
++.+.. .+|+|++.++.
T Consensus 80 ~~~~~~---~~d~Vih~A~~ 96 (335)
T 1rpn_A 80 RAVIKA---QPQEVYNLAAQ 96 (335)
T ss_dssp HHHHHH---CCSEEEECCSC
T ss_pred HHHHHc---CCCEEEECccc
Confidence 655432 58999998764
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=87.89 E-value=2.4 Score=34.35 Aligned_cols=78 Identities=15% Similarity=0.133 Sum_probs=51.8
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~~ 110 (179)
.+++||=.|| +|.....+++++-.. +....|+++|..+.. ..++++++++|+++.+...+
T Consensus 23 ~~~~vlVtGa-tG~iG~~l~~~L~~~---------g~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~ 92 (346)
T 4egb_A 23 NAMNILVTGG-AGFIGSNFVHYMLQS---------YETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQNGELLEH 92 (346)
T ss_dssp -CEEEEEETT-TSHHHHHHHHHHHHH---------CTTEEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHH
T ss_pred CCCeEEEECC-ccHHHHHHHHHHHhh---------CCCcEEEEEeccccccchhhhhhhccCCCeEEEEcCCCCHHHHHH
Confidence 4668887774 576666666554210 113689999977531 12589999999999887666
Q ss_pred HHhhcCCCCccEEeeCCCCCC
Q 030299 111 VIRHFDGCKADLVVCDGAPDV 131 (179)
Q Consensus 111 l~~~~~~~~~D~VlsD~~~~~ 131 (179)
+.+. ..+|+|++.++...
T Consensus 93 ~~~~---~~~d~Vih~A~~~~ 110 (346)
T 4egb_A 93 VIKE---RDVQVIVNFAAESH 110 (346)
T ss_dssp HHHH---HTCCEEEECCCCC-
T ss_pred HHhh---cCCCEEEECCcccc
Confidence 6543 35899999887543
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=87.52 E-value=3.8 Score=33.30 Aligned_cols=76 Identities=14% Similarity=0.059 Sum_probs=49.2
Q ss_pred CCEEEEEccCCChHHHHHHHH---hCCCCCCCCCCCCCCCCeEEEEeCCCCC----------------------------
Q 030299 42 VKRVVDLCAAPGSWSQVLSRK---LYLPAKLSPDSREGDLPLIVAIDLQPMA---------------------------- 90 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~---~~~~~~~~~~~~~~~~~~VvavD~~~~~---------------------------- 90 (179)
...|+++|+-.|+-+..++.. ..+ .+...+|+++|.-..-
T Consensus 70 pG~ivE~GV~rG~S~~~~a~~~~~l~~---------~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l 140 (257)
T 3tos_A 70 PGVIMEFGVRFGRHLGTFAALRGVYEP---------YNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYL 140 (257)
T ss_dssp CSEEEEECCTTCHHHHHHHHHHHHHCT---------TCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHH
T ss_pred CCeEEEEecccCHHHHHHHHHHHHhcc---------cCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHH
Confidence 448999999999988886653 111 0124577777743210
Q ss_pred -------------C--CCCeeEEeccccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 91 -------------P--IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 91 -------------~--~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
+ ..++.++.|++.+ ++..+....+..++|+|..|+.
T Consensus 141 ~~~l~~~~~~~~~g~~~~~i~li~G~~~d--TL~~~l~~~~~~~~dlv~ID~D 191 (257)
T 3tos_A 141 KEVLDAHECSDFFGHVTQRSVLVEGDVRE--TVPRYLAENPQTVIALAYFDLD 191 (257)
T ss_dssp HHHHHHHHTTSTTTTSCCSEEEEESCHHH--HHHHHHHHCTTCCEEEEEECCC
T ss_pred HHHHHHHhhhhhcCCCCCcEEEEEecHHH--HHHHHHHhCCCCceEEEEEcCc
Confidence 1 1467888888865 4444554455567999999984
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=87.47 E-value=3.1 Score=31.98 Aligned_cols=76 Identities=18% Similarity=0.133 Sum_probs=51.7
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CCCCeeEEeccccchhhHHHHHhh
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRH 114 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~~~v~~i~gDi~~~~~~~~l~~~ 114 (179)
++++||=.|++ |+.-..+++++.. .+..|+.++.++.. ..++++++++|+++.+..+++.+.
T Consensus 6 ~~k~vlITGas-ggiG~~~a~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 73 (244)
T 3d3w_A 6 AGRRVLVTGAG-KGIGRGTVQALHA-----------TGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGS 73 (244)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHH-----------TTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTT
T ss_pred CCcEEEEECCC-cHHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHcCCCCEEEEeCCCHHHHHHHHHH
Confidence 46678877765 5555555554431 14689999877521 135778889999998877777654
Q ss_pred cCCCCccEEeeCCCCC
Q 030299 115 FDGCKADLVVCDGAPD 130 (179)
Q Consensus 115 ~~~~~~D~VlsD~~~~ 130 (179)
+ +++|+|++..+..
T Consensus 74 ~--~~id~vi~~Ag~~ 87 (244)
T 3d3w_A 74 V--GPVDLLVNNAAVA 87 (244)
T ss_dssp C--CCCCEEEECCCCC
T ss_pred c--CCCCEEEECCccC
Confidence 3 3689999987643
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=87.35 E-value=1.9 Score=34.80 Aligned_cols=73 Identities=18% Similarity=0.146 Sum_probs=49.9
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCC-------CeEEEEeCCCCC----CCCCeeEEeccccchhhHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDL-------PLIVAIDLQPMA----PIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~-------~~VvavD~~~~~----~~~~v~~i~gDi~~~~~~~ 109 (179)
.+++||=.|+ +|+.-..+++++-. .+ ..|+++|..+.. ...++.++++|+++.+...
T Consensus 13 ~~~~vlVtGa-~G~iG~~l~~~L~~-----------~g~~~~r~~~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~ 80 (342)
T 2hrz_A 13 QGMHIAIIGA-AGMVGRKLTQRLVK-----------DGSLGGKPVEKFTLIDVFQPEAPAGFSGAVDARAADLSAPGEAE 80 (342)
T ss_dssp SCEEEEEETT-TSHHHHHHHHHHHH-----------HCEETTEEEEEEEEEESSCCCCCTTCCSEEEEEECCTTSTTHHH
T ss_pred cCCEEEEECC-CcHHHHHHHHHHHh-----------cCCcccCCCceEEEEEccCCccccccCCceeEEEcCCCCHHHHH
Confidence 4567887775 47676666665532 02 479999987632 1346889999999987665
Q ss_pred HHHhhcCCCCccEEeeCCCC
Q 030299 110 VVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~~ 129 (179)
++.+ ..+|+|++.++.
T Consensus 81 ~~~~----~~~d~vih~A~~ 96 (342)
T 2hrz_A 81 KLVE----ARPDVIFHLAAI 96 (342)
T ss_dssp HHHH----TCCSEEEECCCC
T ss_pred HHHh----cCCCEEEECCcc
Confidence 5543 369999998865
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=87.26 E-value=3.7 Score=31.31 Aligned_cols=77 Identities=14% Similarity=0.037 Sum_probs=51.2
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCC--CeEEEEeCCCCCC-------CCCeeEEeccccchhhHHHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDL--PLIVAIDLQPMAP-------IEGVIQVQGDITNARTAEVVI 112 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~--~~VvavD~~~~~~-------~~~v~~i~gDi~~~~~~~~l~ 112 (179)
+.+||=.|++ |+.-..+++++.. .. ..|+++|.++... ..++.++++|+++.+..+++.
T Consensus 3 ~k~vlItGas-ggiG~~la~~l~~-----------~g~~~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~ 70 (250)
T 1yo6_A 3 PGSVVVTGAN-RGIGLGLVQQLVK-----------DKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFV 70 (250)
T ss_dssp CSEEEESSCS-SHHHHHHHHHHHT-----------CTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHH
T ss_pred CCEEEEecCC-chHHHHHHHHHHh-----------cCCCcEEEEEecCHHHHHHHHhccCCceEEEEeecCCHHHHHHHH
Confidence 4567766754 6677777666642 14 6899999876321 246889999999987655555
Q ss_pred hhc----CCCCccEEeeCCCCC
Q 030299 113 RHF----DGCKADLVVCDGAPD 130 (179)
Q Consensus 113 ~~~----~~~~~D~VlsD~~~~ 130 (179)
+.+ ....+|+|++..+..
T Consensus 71 ~~~~~~~g~~~id~li~~Ag~~ 92 (250)
T 1yo6_A 71 SKVGEIVGSDGLSLLINNAGVL 92 (250)
T ss_dssp HHHHHHHGGGCCCEEEECCCCC
T ss_pred HHHHHhcCCCCCcEEEECCccc
Confidence 432 212689999988643
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=87.13 E-value=0.62 Score=33.19 Aligned_cols=69 Identities=19% Similarity=0.079 Sum_probs=47.6
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCeeEEeccccchhhHHHHHhhcCC
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHFDG 117 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----~~~~v~~i~gDi~~~~~~~~l~~~~~~ 117 (179)
.++|+=+|+ |.+...+++.+.. .+..|+++|.++.. ...++.++.+|.++.+..++. .-
T Consensus 6 ~~~v~I~G~--G~iG~~la~~L~~-----------~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~----~~ 68 (141)
T 3llv_A 6 RYEYIVIGS--EAAGVGLVRELTA-----------AGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSL----DL 68 (141)
T ss_dssp CCSEEEECC--SHHHHHHHHHHHH-----------TTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHS----CC
T ss_pred CCEEEEECC--CHHHHHHHHHHHH-----------CCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhC----Cc
Confidence 357888888 6677777776532 14689999998742 124788899999998765432 33
Q ss_pred CCccEEeeCC
Q 030299 118 CKADLVVCDG 127 (179)
Q Consensus 118 ~~~D~VlsD~ 127 (179)
..+|.|+.-.
T Consensus 69 ~~~d~vi~~~ 78 (141)
T 3llv_A 69 EGVSAVLITG 78 (141)
T ss_dssp TTCSEEEECC
T ss_pred ccCCEEEEec
Confidence 4689988743
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=87.07 E-value=3.6 Score=31.53 Aligned_cols=76 Identities=17% Similarity=0.082 Sum_probs=52.5
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CCCCeeEEeccccchhhHHHHHhh
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRH 114 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~~~v~~i~gDi~~~~~~~~l~~~ 114 (179)
++++||=.|++ |+.-..+++++.. .+..|+++|.++.. ..++++++.+|+++.+..+++.+.
T Consensus 6 ~~~~vlVTGas-ggiG~~~a~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 73 (244)
T 1cyd_A 6 SGLRALVTGAG-KGIGRDTVKALHA-----------SGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGG 73 (244)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHH-----------TTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTT
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHhccCCCcEEecCCCHHHHHHHHHH
Confidence 45678877765 5666666655532 14689999987521 135788889999998877776653
Q ss_pred cCCCCccEEeeCCCCC
Q 030299 115 FDGCKADLVVCDGAPD 130 (179)
Q Consensus 115 ~~~~~~D~VlsD~~~~ 130 (179)
+ +++|+|++..+..
T Consensus 74 ~--~~id~vi~~Ag~~ 87 (244)
T 1cyd_A 74 I--GPVDLLVNNAALV 87 (244)
T ss_dssp C--CCCSEEEECCCCC
T ss_pred c--CCCCEEEECCccc
Confidence 3 3689999988644
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=87.06 E-value=4.5 Score=31.34 Aligned_cols=76 Identities=13% Similarity=0.076 Sum_probs=51.6
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----CCCCeeEEeccccchhhHHHHHhhcC
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----PIEGVIQVQGDITNARTAEVVIRHFD 116 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----~~~~v~~i~gDi~~~~~~~~l~~~~~ 116 (179)
+++||=.|++ ||.-..+++++.. ....|+.+|.++.. .+.++.++++|+++.+..+++.+.+
T Consensus 6 ~k~vlVTGas-~gIG~~ia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~- 72 (246)
T 2ag5_A 6 GKVIILTAAA-QGIGQAAALAFAR-----------EGAKVIATDINESKLQELEKYPGIQTRVLDVTKKKQIDQFANEV- 72 (246)
T ss_dssp TCEEEESSTT-SHHHHHHHHHHHH-----------TTCEEEEEESCHHHHGGGGGSTTEEEEECCTTCHHHHHHHHHHC-
T ss_pred CCEEEEeCCC-cHHHHHHHHHHHH-----------CCCEEEEEECCHHHHHHHHhccCceEEEeeCCCHHHHHHHHHHh-
Confidence 5677777765 4555555554431 14689999987521 2337889999999988777776655
Q ss_pred CCCccEEeeCCCCCC
Q 030299 117 GCKADLVVCDGAPDV 131 (179)
Q Consensus 117 ~~~~D~VlsD~~~~~ 131 (179)
+++|+|+++.+...
T Consensus 73 -~~id~lv~~Ag~~~ 86 (246)
T 2ag5_A 73 -ERLDVLFNVAGFVH 86 (246)
T ss_dssp -SCCSEEEECCCCCC
T ss_pred -CCCCEEEECCccCC
Confidence 36999999886543
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=86.90 E-value=8.2 Score=30.66 Aligned_cols=73 Identities=14% Similarity=0.002 Sum_probs=47.6
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-CCCCeeEEeccccchhhHHHHHhhcCCCCcc
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-PIEGVIQVQGDITNARTAEVVIRHFDGCKAD 121 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-~~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D 121 (179)
++||=.|+ +|..-..+++++.. .+..|++++.++-. .+.+++++.+|++ .+...++. . ++|
T Consensus 3 ~~vlVtGa-tG~iG~~l~~~L~~-----------~g~~V~~~~r~~~~~~~~~~~~~~~Dl~-~~~~~~~~---~--~~d 64 (311)
T 3m2p_A 3 LKIAVTGG-TGFLGQYVVESIKN-----------DGNTPIILTRSIGNKAINDYEYRVSDYT-LEDLINQL---N--DVD 64 (311)
T ss_dssp CEEEEETT-TSHHHHHHHHHHHH-----------TTCEEEEEESCCC-----CCEEEECCCC-HHHHHHHT---T--TCS
T ss_pred CEEEEECC-CcHHHHHHHHHHHh-----------CCCEEEEEeCCCCcccCCceEEEEcccc-HHHHHHhh---c--CCC
Confidence 46666554 67777777666532 14689999987422 2458999999999 76554443 2 799
Q ss_pred EEeeCCCCCCCC
Q 030299 122 LVVCDGAPDVTG 133 (179)
Q Consensus 122 ~VlsD~~~~~~g 133 (179)
+|++-+++....
T Consensus 65 ~Vih~a~~~~~~ 76 (311)
T 3m2p_A 65 AVVHLAATRGSQ 76 (311)
T ss_dssp EEEECCCCCCSS
T ss_pred EEEEccccCCCC
Confidence 999988754433
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=86.87 E-value=3.8 Score=32.03 Aligned_cols=79 Identities=20% Similarity=0.161 Sum_probs=50.6
Q ss_pred CCCEEEEEcc-CCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 41 GVKRVVDLCA-APGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 41 ~g~~VlDLga-gpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
.+++||=.|+ |.|.-...+.+... .+..|+.+|.++.. ...++.++++|+++.+..
T Consensus 21 ~~k~vlITGasg~GIG~~~a~~l~~------------~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v 88 (266)
T 3o38_A 21 KGKVVLVTAAAGTGIGSTTARRALL------------EGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAV 88 (266)
T ss_dssp TTCEEEESSCSSSSHHHHHHHHHHH------------TTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHH------------CCCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHH
Confidence 4678888888 45654433332222 14789999987621 124788999999998765
Q ss_pred HHHHhhcC--CCCccEEeeCCCCCC
Q 030299 109 EVVIRHFD--GCKADLVVCDGAPDV 131 (179)
Q Consensus 109 ~~l~~~~~--~~~~D~VlsD~~~~~ 131 (179)
+++.+... -+++|+|+++.+...
T Consensus 89 ~~~~~~~~~~~g~id~li~~Ag~~~ 113 (266)
T 3o38_A 89 DALITQTVEKAGRLDVLVNNAGLGG 113 (266)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred HHHHHHHHHHhCCCcEEEECCCcCC
Confidence 55554321 136899999987543
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=86.78 E-value=2.8 Score=34.09 Aligned_cols=71 Identities=20% Similarity=0.089 Sum_probs=50.2
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC---------------CCCeeEEeccccchh
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP---------------IEGVIQVQGDITNAR 106 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~---------------~~~v~~i~gDi~~~~ 106 (179)
+++||=.|| +|+....+++++.. .+..|++++..+... ..++.++++|+++.+
T Consensus 27 ~~~vlVtGa-tG~iG~~l~~~L~~-----------~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~ 94 (352)
T 1sb8_A 27 PKVWLITGV-AGFIGSNLLETLLK-----------LDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLD 94 (352)
T ss_dssp CCEEEEETT-TSHHHHHHHHHHHH-----------TTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHH
T ss_pred CCeEEEECC-CcHHHHHHHHHHHH-----------CCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHH
Confidence 567887775 57777777665532 146899999865310 158899999999987
Q ss_pred hHHHHHhhcCCCCccEEeeCCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
...++.+ .+|+|++..+.
T Consensus 95 ~~~~~~~-----~~d~vih~A~~ 112 (352)
T 1sb8_A 95 DCNNACA-----GVDYVLHQAAL 112 (352)
T ss_dssp HHHHHHT-----TCSEEEECCSC
T ss_pred HHHHHhc-----CCCEEEECCcc
Confidence 6555542 68999998764
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=86.57 E-value=0.65 Score=39.22 Aligned_cols=74 Identities=19% Similarity=0.138 Sum_probs=46.0
Q ss_pred CCCCCEEEEEccCC-ChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCeeEEeccccchh-hHHHHH
Q 030299 39 FEGVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNAR-TAEVVI 112 (179)
Q Consensus 39 l~~g~~VlDLgagp-Gg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----~~~~v~~i~gDi~~~~-~~~~l~ 112 (179)
+++|++||-+|||+ |..+..+++..+ ...|+++|.++.+ .--|+..+ |..+.+ ..+++.
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlAk~~G-------------a~~Vi~~~~~~~~~~~a~~lGa~~i--~~~~~~~~~~~v~ 247 (398)
T 1kol_A 183 VGPGSTVYVAGAGPVGLAAAASARLLG-------------AAVVIVGDLNPARLAHAKAQGFEIA--DLSLDTPLHEQIA 247 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-------------CSEEEEEESCHHHHHHHHHTTCEEE--ETTSSSCHHHHHH
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCC-------------CCeEEEEcCCHHHHHHHHHcCCcEE--ccCCcchHHHHHH
Confidence 47899999999876 666666777664 2379999988742 11255433 333222 234454
Q ss_pred hhcCCCCccEEeeCC
Q 030299 113 RHFDGCKADLVVCDG 127 (179)
Q Consensus 113 ~~~~~~~~D~VlsD~ 127 (179)
+...+.++|+|+-..
T Consensus 248 ~~t~g~g~Dvvid~~ 262 (398)
T 1kol_A 248 ALLGEPEVDCAVDAV 262 (398)
T ss_dssp HHHSSSCEEEEEECC
T ss_pred HHhCCCCCCEEEECC
Confidence 444455799988643
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=86.39 E-value=2 Score=32.85 Aligned_cols=75 Identities=17% Similarity=0.137 Sum_probs=50.2
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCeeEEeccccchhhHHHHHhhcC-CCCc
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFD-GCKA 120 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~~~~v~~i~gDi~~~~~~~~l~~~~~-~~~~ 120 (179)
+++||=.|++ |+.-..+++++.. .+..|+++|.++. ...+.++++|+++.+..+++.+... ...+
T Consensus 2 ~k~vlVtGas-ggiG~~la~~l~~-----------~G~~V~~~~r~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 67 (242)
T 1uay_A 2 ERSALVTGGA-SGLGRAAALALKA-----------RGYRVVVLDLRRE--GEDLIYVEGDVTREEDVRRAVARAQEEAPL 67 (242)
T ss_dssp CCEEEEETTT-SHHHHHHHHHHHH-----------HTCEEEEEESSCC--SSSSEEEECCTTCHHHHHHHHHHHHHHSCE
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHH-----------CCCEEEEEccCcc--ccceEEEeCCCCCHHHHHHHHHHHHhhCCc
Confidence 4567777765 5666555554421 1468999998775 4567889999999876666554321 1268
Q ss_pred cEEeeCCCCC
Q 030299 121 DLVVCDGAPD 130 (179)
Q Consensus 121 D~VlsD~~~~ 130 (179)
|.|++..+..
T Consensus 68 d~li~~ag~~ 77 (242)
T 1uay_A 68 FAVVSAAGVG 77 (242)
T ss_dssp EEEEECCCCC
T ss_pred eEEEEccccc
Confidence 9999987643
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=86.37 E-value=4 Score=32.47 Aligned_cols=78 Identities=13% Similarity=0.080 Sum_probs=51.8
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~~l 111 (179)
+++||=.|++ |+....+++++.. ....|+.++.++.. .-.++.++++|+++.+..+++
T Consensus 44 ~k~vlITGas-ggIG~~la~~L~~-----------~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~ 111 (285)
T 2c07_A 44 NKVALVTGAG-RGIGREIAKMLAK-----------SVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEV 111 (285)
T ss_dssp SCEEEEESTT-SHHHHHHHHHHTT-----------TSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHH
T ss_pred CCEEEEECCC-cHHHHHHHHHHHH-----------cCCEEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCCHHHHHHH
Confidence 5678877766 6677777776643 24688888865421 123578889999998766655
Q ss_pred HhhcC--CCCccEEeeCCCCCC
Q 030299 112 IRHFD--GCKADLVVCDGAPDV 131 (179)
Q Consensus 112 ~~~~~--~~~~D~VlsD~~~~~ 131 (179)
.+... -+++|+|++..+...
T Consensus 112 ~~~~~~~~~~id~li~~Ag~~~ 133 (285)
T 2c07_A 112 INKILTEHKNVDILVNNAGITR 133 (285)
T ss_dssp HHHHHHHCSCCCEEEECCCCCC
T ss_pred HHHHHHhcCCCCEEEECCCCCC
Confidence 54321 136899999886543
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=86.23 E-value=0.7 Score=36.68 Aligned_cols=79 Identities=15% Similarity=0.059 Sum_probs=53.6
Q ss_pred CCCEEEEEcc-CCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-------CC-CCeeEEeccccchhhHHHH
Q 030299 41 GVKRVVDLCA-APGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------PI-EGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 41 ~g~~VlDLga-gpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-------~~-~~v~~i~gDi~~~~~~~~l 111 (179)
.+++||=.|+ |.||.-..+++++.. ....|+.+|.++.. .+ ..+.++++|+++.+..+++
T Consensus 6 ~~k~vlVTGa~~s~gIG~aia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~ 74 (269)
T 2h7i_A 6 DGKRILVSGIITDSSIAFHIARVAQE-----------QGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASL 74 (269)
T ss_dssp TTCEEEECCCSSTTSHHHHHHHHHHH-----------TTCEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHH
T ss_pred CCCEEEEECCCCCCchHHHHHHHHHH-----------CCCEEEEEecChHHHHHHHHHhcCCCceEEEccCCCHHHHHHH
Confidence 3567888898 477777777766532 14789999987621 11 3577889999998765555
Q ss_pred Hhh----cC-CCCccEEeeCCCCC
Q 030299 112 IRH----FD-GCKADLVVCDGAPD 130 (179)
Q Consensus 112 ~~~----~~-~~~~D~VlsD~~~~ 130 (179)
.+. +. ..++|+|+++.+..
T Consensus 75 ~~~~~~~~g~~~~iD~lv~nAg~~ 98 (269)
T 2h7i_A 75 AGRVTEAIGAGNKLDGVVHSIGFM 98 (269)
T ss_dssp HHHHHHHHCTTCCEEEEEECCCCC
T ss_pred HHHHHHHhCCCCCceEEEECCccC
Confidence 543 32 12699999988643
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=86.12 E-value=2.9 Score=33.88 Aligned_cols=72 Identities=21% Similarity=0.207 Sum_probs=51.0
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC---------C------CCeeEEeccccch
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP---------I------EGVIQVQGDITNA 105 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~---------~------~~v~~i~gDi~~~ 105 (179)
.+++||=.|+ +|.....+++++-. .+..|++++..+... . .+++++++|+++.
T Consensus 24 ~~~~vlVtGa-tG~iG~~l~~~L~~-----------~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~ 91 (351)
T 3ruf_A 24 SPKTWLITGV-AGFIGSNLLEKLLK-----------LNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDL 91 (351)
T ss_dssp SCCEEEEETT-TSHHHHHHHHHHHH-----------TTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCH
T ss_pred CCCeEEEECC-CcHHHHHHHHHHHH-----------CCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCH
Confidence 4578887774 57777777666532 147899999876421 1 6899999999998
Q ss_pred hhHHHHHhhcCCCCccEEeeCCCC
Q 030299 106 RTAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 106 ~~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
+...++.+ ++|+|++-++.
T Consensus 92 ~~~~~~~~-----~~d~Vih~A~~ 110 (351)
T 3ruf_A 92 TTCEQVMK-----GVDHVLHQAAL 110 (351)
T ss_dssp HHHHHHTT-----TCSEEEECCCC
T ss_pred HHHHHHhc-----CCCEEEECCcc
Confidence 76554432 69999998764
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=86.11 E-value=5.8 Score=31.63 Aligned_cols=79 Identities=10% Similarity=0.068 Sum_probs=51.8
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--C---------------CCCeeEEecccc
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--P---------------IEGVIQVQGDIT 103 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--~---------------~~~v~~i~gDi~ 103 (179)
.++++|=-|++.| .-..+++++.. .+.+|+.+|.++.. . ...+.++++|++
T Consensus 8 ~~k~vlVTGas~G-IG~aia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~ 75 (285)
T 3sc4_A 8 RGKTMFISGGSRG-IGLAIAKRVAA-----------DGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIR 75 (285)
T ss_dssp TTCEEEEESCSSH-HHHHHHHHHHT-----------TTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTT
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHH-----------CCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCC
Confidence 4667888887754 55555555532 25789999987641 1 135788999999
Q ss_pred chhhHHHHHhhcC--CCCccEEeeCCCCCC
Q 030299 104 NARTAEVVIRHFD--GCKADLVVCDGAPDV 131 (179)
Q Consensus 104 ~~~~~~~l~~~~~--~~~~D~VlsD~~~~~ 131 (179)
+.+..+++.+... -+++|+++++.+...
T Consensus 76 ~~~~v~~~~~~~~~~~g~id~lvnnAg~~~ 105 (285)
T 3sc4_A 76 DGDAVAAAVAKTVEQFGGIDICVNNASAIN 105 (285)
T ss_dssp SHHHHHHHHHHHHHHHSCCSEEEECCCCCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence 9876555554321 136999999887543
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=85.97 E-value=0.61 Score=38.98 Aligned_cols=73 Identities=14% Similarity=0.136 Sum_probs=43.3
Q ss_pred CCCCCEEEEEccCC-ChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCeeEEeccccchhhHHHHHh
Q 030299 39 FEGVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 39 l~~g~~VlDLgagp-Gg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~----~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
+++|++||-+|||+ |..+..+++..+ ...|+++|.++.+. --|...+ .|..+.+..+++.+
T Consensus 188 ~~~g~~VlV~GaG~vG~~a~qlak~~G-------------a~~Vi~~~~~~~~~~~a~~lGa~~v-i~~~~~~~~~~~~~ 253 (371)
T 1f8f_A 188 VTPASSFVTWGAGAVGLSALLAAKVCG-------------ASIIIAVDIVESRLELAKQLGATHV-INSKTQDPVAAIKE 253 (371)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHT-------------CSEEEEEESCHHHHHHHHHHTCSEE-EETTTSCHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-------------CCeEEEECCCHHHHHHHHHcCCCEE-ecCCccCHHHHHHH
Confidence 47899999999877 666667777765 23799999887320 0132211 12222233344444
Q ss_pred hcCCCCccEEeeC
Q 030299 114 HFDGCKADLVVCD 126 (179)
Q Consensus 114 ~~~~~~~D~VlsD 126 (179)
...+ ++|+|+-.
T Consensus 254 ~~~g-g~D~vid~ 265 (371)
T 1f8f_A 254 ITDG-GVNFALES 265 (371)
T ss_dssp HTTS-CEEEEEEC
T ss_pred hcCC-CCcEEEEC
Confidence 3344 78888753
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=85.93 E-value=0.42 Score=40.92 Aligned_cols=77 Identities=14% Similarity=0.055 Sum_probs=46.2
Q ss_pred CCEEEEEccCCChHHHHHHHH--------hCCCCCCCCCCCCCCCCeEEEEeCCCCC------CCC------CeeEEecc
Q 030299 42 VKRVVDLCAAPGSWSQVLSRK--------LYLPAKLSPDSREGDLPLIVAIDLQPMA------PIE------GVIQVQGD 101 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~--------~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~~------~v~~i~gD 101 (179)
.-+|+||||+.|.-|..+... ... .+. ...+...|+..|+-... .++ +..|+.|.
T Consensus 52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~----~~~-~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gv 126 (359)
T 1m6e_X 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKK----MGR-ENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGV 126 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHS----SSC-SSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEE
T ss_pred ceEEEecCCCCCcchHHHHHHHHHHHHHHHHh----cCC-CCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEec
Confidence 457999999999888754332 100 000 01235789999987742 222 34566665
Q ss_pred ccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 102 ITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 102 i~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
....-. ..|+...+|+|.|..+
T Consensus 127 pgSFy~-----rlfp~~S~d~v~Ss~a 148 (359)
T 1m6e_X 127 PGSFYG-----RLFPRNTLHFIHSSYS 148 (359)
T ss_dssp ESCSSS-----CCSCTTCBSCEEEESC
T ss_pred chhhhh-----ccCCCCceEEEEehhh
Confidence 544211 1267889999999664
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=85.79 E-value=4 Score=33.76 Aligned_cols=73 Identities=15% Similarity=-0.014 Sum_probs=51.4
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCeeEEeccccchhhHHHHHhhcC
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIRHFD 116 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~----~~~v~~i~gDi~~~~~~~~l~~~~~ 116 (179)
.+++||=.|+ +|+.-..+++++-. .+..|++++.++... ..+++++++|+++.+...++.+
T Consensus 28 ~~~~vlVtGa-tG~iG~~l~~~L~~-----------~g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~--- 92 (379)
T 2c5a_A 28 ENLKISITGA-GGFIASHIARRLKH-----------EGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTE--- 92 (379)
T ss_dssp SCCEEEEETT-TSHHHHHHHHHHHH-----------TTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHT---
T ss_pred cCCeEEEECC-ccHHHHHHHHHHHH-----------CCCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHHhC---
Confidence 3568888775 57777777665531 146899999876432 2478899999999876555442
Q ss_pred CCCccEEeeCCCCC
Q 030299 117 GCKADLVVCDGAPD 130 (179)
Q Consensus 117 ~~~~D~VlsD~~~~ 130 (179)
.+|+|++..+..
T Consensus 93 --~~d~Vih~A~~~ 104 (379)
T 2c5a_A 93 --GVDHVFNLAADM 104 (379)
T ss_dssp --TCSEEEECCCCC
T ss_pred --CCCEEEECceec
Confidence 689999987653
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=85.65 E-value=5.4 Score=30.60 Aligned_cols=69 Identities=19% Similarity=0.146 Sum_probs=47.9
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCC-CeEEEEeCCCCC----CCCCeeEEeccccchhhHHHHHhhcCC
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDL-PLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHFDG 117 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~-~~VvavD~~~~~----~~~~v~~i~gDi~~~~~~~~l~~~~~~ 117 (179)
++||=.| |+|+.-..+++++.. .. ..|++++.++.. ...++.++++|+++.+..+++.+
T Consensus 24 k~vlVtG-atG~iG~~l~~~L~~-----------~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---- 87 (236)
T 3qvo_A 24 KNVLILG-AGGQIARHVINQLAD-----------KQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQ---- 87 (236)
T ss_dssp EEEEEET-TTSHHHHHHHHHHTT-----------CTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHT----
T ss_pred cEEEEEe-CCcHHHHHHHHHHHh-----------CCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhc----
Confidence 3566555 457777777777653 13 589999887632 12489999999999876655542
Q ss_pred CCccEEeeCCC
Q 030299 118 CKADLVVCDGA 128 (179)
Q Consensus 118 ~~~D~VlsD~~ 128 (179)
.+|+|++..+
T Consensus 88 -~~D~vv~~a~ 97 (236)
T 3qvo_A 88 -GQDIVYANLT 97 (236)
T ss_dssp -TCSEEEEECC
T ss_pred -CCCEEEEcCC
Confidence 5799998764
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=85.56 E-value=0.75 Score=38.15 Aligned_cols=73 Identities=21% Similarity=0.156 Sum_probs=44.7
Q ss_pred CCCCCEEEEEccCC-ChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCeeEEeccccchhhHHHHHh
Q 030299 39 FEGVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 39 l~~g~~VlDLgagp-Gg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~----~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
+++|++||=+|||+ |..+..+++..+ ..+|+++|.++.+. --|+..+ -|..+.+..+++.+
T Consensus 164 ~~~g~~VlV~GaG~vG~~a~qla~~~G-------------a~~Vi~~~~~~~~~~~~~~lGa~~v-i~~~~~~~~~~v~~ 229 (352)
T 3fpc_A 164 IKLGDTVCVIGIGPVGLMSVAGANHLG-------------AGRIFAVGSRKHCCDIALEYGATDI-INYKNGDIVEQILK 229 (352)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTT-------------CSSEEEECCCHHHHHHHHHHTCCEE-ECGGGSCHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-------------CcEEEEECCCHHHHHHHHHhCCceE-EcCCCcCHHHHHHH
Confidence 47899999999866 555555666554 23799999887420 0133211 23334444555666
Q ss_pred hcCCCCccEEee
Q 030299 114 HFDGCKADLVVC 125 (179)
Q Consensus 114 ~~~~~~~D~Vls 125 (179)
...+.++|+|+-
T Consensus 230 ~t~g~g~D~v~d 241 (352)
T 3fpc_A 230 ATDGKGVDKVVI 241 (352)
T ss_dssp HTTTCCEEEEEE
T ss_pred HcCCCCCCEEEE
Confidence 556667999885
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=85.13 E-value=4.1 Score=32.30 Aligned_cols=79 Identities=16% Similarity=0.129 Sum_probs=51.0
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCeeEEeccccchhhHHHHHhhcC-
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHFD- 116 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----~~~~v~~i~gDi~~~~~~~~l~~~~~- 116 (179)
+++||=-|++. |.-..+++++.. .+..|+.+|.++.. ...++.++++|+++.+..+++.+...
T Consensus 16 ~k~vlVTGas~-gIG~aia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 83 (266)
T 3p19_A 16 KKLVVITGASS-GIGEAIARRFSE-----------EGHPLLLLARRVERLKALNLPNTLCAQVDVTDKYTFDTAITRAEK 83 (266)
T ss_dssp CCEEEEESTTS-HHHHHHHHHHHH-----------TTCCEEEEESCHHHHHTTCCTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCC-HHHHHHHHHHHH-----------CCCEEEEEECCHHHHHHhhcCCceEEEecCCCHHHHHHHHHHHHH
Confidence 56778778765 455555554421 14689999987521 23478899999999876555544321
Q ss_pred -CCCccEEeeCCCCCCC
Q 030299 117 -GCKADLVVCDGAPDVT 132 (179)
Q Consensus 117 -~~~~D~VlsD~~~~~~ 132 (179)
-+++|+|+++.+....
T Consensus 84 ~~g~iD~lvnnAg~~~~ 100 (266)
T 3p19_A 84 IYGPADAIVNNAGMMLL 100 (266)
T ss_dssp HHCSEEEEEECCCCCCC
T ss_pred HCCCCCEEEECCCcCCC
Confidence 1369999999875443
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=85.08 E-value=3.9 Score=33.07 Aligned_cols=75 Identities=20% Similarity=0.155 Sum_probs=52.3
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CCCCeeEEeccccchhhHHHHHhhc
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRHF 115 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~~~v~~i~gDi~~~~~~~~l~~~~ 115 (179)
+++||=.|+ +|+....+++++.. .+..|+++|..+.. .+.++.++.+|+++.+...++.+.
T Consensus 21 ~~~vlVTGa-tG~iG~~l~~~L~~-----------~g~~V~~~~r~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~- 87 (333)
T 2q1w_A 21 MKKVFITGI-CGQIGSHIAELLLE-----------RGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIGD- 87 (333)
T ss_dssp CCEEEEETT-TSHHHHHHHHHHHH-----------TTCEEEEEECCSSCCGGGSCCCTTEEEEECCTTCHHHHHHHHHH-
T ss_pred CCEEEEeCC-ccHHHHHHHHHHHH-----------CCCEEEEEECCCccchhhHhhcCCceEEEEeCCCHHHHHHHHhc-
Confidence 567887774 57777777665532 14689999876532 125889999999998766665542
Q ss_pred CCCCccEEeeCCCCCC
Q 030299 116 DGCKADLVVCDGAPDV 131 (179)
Q Consensus 116 ~~~~~D~VlsD~~~~~ 131 (179)
..+|+|++.++...
T Consensus 88 --~~~D~vih~A~~~~ 101 (333)
T 2q1w_A 88 --LQPDAVVHTAASYK 101 (333)
T ss_dssp --HCCSEEEECCCCCS
T ss_pred --cCCcEEEECceecC
Confidence 35899999887543
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=84.98 E-value=0.56 Score=45.33 Aligned_cols=75 Identities=12% Similarity=0.065 Sum_probs=47.9
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CCCCeeEEeccccchhhH---HHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTA---EVVI 112 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~~~v~~i~gDi~~~~~~---~~l~ 112 (179)
.-+++||.||.||++.-+.+. +. .-.|.|+|+.+.. ..++..++.+||.+.... .++.
T Consensus 540 ~l~~iDLFaG~GGlslGl~~A-G~------------~~vv~avEid~~A~~ty~~N~p~~~~~~~DI~~l~~~~~~~di~ 606 (1002)
T 3swr_A 540 KLRTLDVFSGCGGLSEGFHQA-GI------------SDTLWAIEMWDPAAQAFRLNNPGSTVFTEDCNILLKLVMAGETT 606 (1002)
T ss_dssp CEEEEEESCTTSHHHHHHHHH-TS------------EEEEEEECSSHHHHHHHHHHCTTSEEECSCHHHHHHHHHHTCSB
T ss_pred CCeEEEeccCccHHHHHHHHC-CC------------CceEEEEECCHHHHHHHHHhCCCCccccccHHHHhhhccchhhh
Confidence 348999999999999988664 31 0257899999853 356777888888654210 0000
Q ss_pred ----hhcC-CCCccEEeeCCCC
Q 030299 113 ----RHFD-GCKADLVVCDGAP 129 (179)
Q Consensus 113 ----~~~~-~~~~D~VlsD~~~ 129 (179)
..++ .+.+|+|+.--+|
T Consensus 607 ~~~~~~lp~~~~vDll~GGpPC 628 (1002)
T 3swr_A 607 NSRGQRLPQKGDVEMLCGGPPC 628 (1002)
T ss_dssp CTTCCBCCCTTTCSEEEECCCC
T ss_pred hhhhhhcccCCCeeEEEEcCCC
Confidence 1122 2368998876543
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=84.93 E-value=2.1 Score=34.45 Aligned_cols=71 Identities=13% Similarity=-0.005 Sum_probs=47.3
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC--C--CCeeEEeccccchhhHHHHHhhcCC
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--I--EGVIQVQGDITNARTAEVVIRHFDG 117 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~--~--~~v~~i~gDi~~~~~~~~l~~~~~~ 117 (179)
.++||=.|+ +|.....+++++-. .+..|++++.++... + .+++++++|+++.+...++. .
T Consensus 13 ~M~ilVtGa-tG~iG~~l~~~L~~-----------~g~~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~---~- 76 (342)
T 2x4g_A 13 HVKYAVLGA-TGLLGHHAARAIRA-----------AGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERAL---R- 76 (342)
T ss_dssp CCEEEEEST-TSHHHHHHHHHHHH-----------TTCEEEEEECTTSCGGGGGGGCCEEEECCTTCHHHHHHHT---T-
T ss_pred CCEEEEECC-CcHHHHHHHHHHHH-----------CCCEEEEEecChHhhhhhccCCeEEEEecCCCHHHHHHHH---c-
Confidence 357887775 57777777665532 146899999876431 1 27889999999987654443 2
Q ss_pred CCccEEeeCCCC
Q 030299 118 CKADLVVCDGAP 129 (179)
Q Consensus 118 ~~~D~VlsD~~~ 129 (179)
++|+|++..+.
T Consensus 77 -~~d~vih~a~~ 87 (342)
T 2x4g_A 77 -GLDGVIFSAGY 87 (342)
T ss_dssp -TCSEEEEC---
T ss_pred -CCCEEEECCcc
Confidence 58999998764
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=84.87 E-value=4.4 Score=32.29 Aligned_cols=79 Identities=13% Similarity=0.114 Sum_probs=51.8
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~~ 110 (179)
.+++||=.|++. |.-..+++++.. .+..|+.+|.++.. ....+.++++|+++.+..++
T Consensus 31 ~gk~~lVTGas~-GIG~aia~~la~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~ 98 (276)
T 3r1i_A 31 SGKRALITGAST-GIGKKVALAYAE-----------AGAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRG 98 (276)
T ss_dssp TTCEEEEESTTS-HHHHHHHHHHHH-----------TTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHH
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHH
Confidence 467888888775 455555554431 14789999987632 12368889999999886655
Q ss_pred HHhhcCC--CCccEEeeCCCCCC
Q 030299 111 VIRHFDG--CKADLVVCDGAPDV 131 (179)
Q Consensus 111 l~~~~~~--~~~D~VlsD~~~~~ 131 (179)
+.+...+ +++|+|+++.+...
T Consensus 99 ~~~~~~~~~g~iD~lvnnAg~~~ 121 (276)
T 3r1i_A 99 MLDQMTGELGGIDIAVCNAGIVS 121 (276)
T ss_dssp HHHHHHHHHSCCSEEEECCCCCC
T ss_pred HHHHHHHHcCCCCEEEECCCCCC
Confidence 5543211 36999999887544
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=84.87 E-value=3.8 Score=32.11 Aligned_cols=79 Identities=10% Similarity=0.029 Sum_probs=52.1
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~~ 110 (179)
.+++||=.|++.| .-..+++++.. .+.+|+.+|.++.. ...++.++++|+++.+..++
T Consensus 6 ~~k~vlVTGas~G-IG~aia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~ 73 (252)
T 3h7a_A 6 RNATVAVIGAGDY-IGAEIAKKFAA-----------EGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTA 73 (252)
T ss_dssp CSCEEEEECCSSH-HHHHHHHHHHH-----------TTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHH
T ss_pred CCCEEEEECCCch-HHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHH
Confidence 4667887787755 45554444421 14689999987632 12368889999999886665
Q ss_pred HHhhcCC-CCccEEeeCCCCCC
Q 030299 111 VIRHFDG-CKADLVVCDGAPDV 131 (179)
Q Consensus 111 l~~~~~~-~~~D~VlsD~~~~~ 131 (179)
+.+...+ +++|+++++.+...
T Consensus 74 ~~~~~~~~g~id~lv~nAg~~~ 95 (252)
T 3h7a_A 74 FLNAADAHAPLEVTIFNVGANV 95 (252)
T ss_dssp HHHHHHHHSCEEEEEECCCCCC
T ss_pred HHHHHHhhCCceEEEECCCcCC
Confidence 5543211 47999999987544
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=84.82 E-value=1.4 Score=29.72 Aligned_cols=70 Identities=17% Similarity=0.089 Sum_probs=47.3
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCeeEEeccccchhhHHHHHhhcCC
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHFDG 117 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----~~~~v~~i~gDi~~~~~~~~l~~~~~~ 117 (179)
+++|+=+|+ |+....+++.+... +...|+++|.++.. ...++..+.+|+++.+...++.
T Consensus 5 ~~~v~I~G~--G~iG~~~~~~l~~~----------g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~----- 67 (118)
T 3ic5_A 5 RWNICVVGA--GKIGQMIAALLKTS----------SNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKAL----- 67 (118)
T ss_dssp CEEEEEECC--SHHHHHHHHHHHHC----------SSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHT-----
T ss_pred cCeEEEECC--CHHHHHHHHHHHhC----------CCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHH-----
Confidence 467888888 77777666655321 12579999988732 1357888899999876544432
Q ss_pred CCccEEeeCCC
Q 030299 118 CKADLVVCDGA 128 (179)
Q Consensus 118 ~~~D~VlsD~~ 128 (179)
..+|+|++..+
T Consensus 68 ~~~d~vi~~~~ 78 (118)
T 3ic5_A 68 GGFDAVISAAP 78 (118)
T ss_dssp TTCSEEEECSC
T ss_pred cCCCEEEECCC
Confidence 26899998653
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=84.74 E-value=1.7 Score=34.47 Aligned_cols=79 Identities=10% Similarity=-0.002 Sum_probs=53.7
Q ss_pred CCCEEEEEccC-CChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CCCCeeEEeccccchhhHHH
Q 030299 41 GVKRVVDLCAA-PGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 41 ~g~~VlDLgag-pGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~~~~v~~i~gDi~~~~~~~~ 110 (179)
.+++||=.|++ +||.-..+++++.. .+..|+.+|.++.. ...++.++++|+++.+..++
T Consensus 5 ~~k~vlVTGas~~~gIG~~~a~~l~~-----------~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~ 73 (275)
T 2pd4_A 5 KGKKGLIVGVANNKSIAYGIAQSCFN-----------QGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKS 73 (275)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHT-----------TTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHH
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCHHHHHH
Confidence 35688888986 47777777776642 25789999887631 12347889999999876555
Q ss_pred HHhhcC--CCCccEEeeCCCCC
Q 030299 111 VIRHFD--GCKADLVVCDGAPD 130 (179)
Q Consensus 111 l~~~~~--~~~~D~VlsD~~~~ 130 (179)
+.+... -+++|+|+++.+..
T Consensus 74 ~~~~~~~~~g~id~lv~nAg~~ 95 (275)
T 2pd4_A 74 LYNSVKKDLGSLDFIVHSVAFA 95 (275)
T ss_dssp HHHHHHHHTSCEEEEEECCCCC
T ss_pred HHHHHHHHcCCCCEEEECCccC
Confidence 554321 13699999988643
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=84.59 E-value=1.1 Score=35.07 Aligned_cols=81 Identities=7% Similarity=-0.074 Sum_probs=54.1
Q ss_pred CCCCEEEEEccC-CChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CCCCeeEEeccccchhhHH
Q 030299 40 EGVKRVVDLCAA-PGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 40 ~~g~~VlDLgag-pGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~~~~v~~i~gDi~~~~~~~ 109 (179)
.++++||=.|++ .||.-..+++++.. .+..|+.++.+... ...++.++++|+++.+..+
T Consensus 12 ~~~k~vlITGa~~~~giG~~ia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~ 80 (271)
T 3ek2_A 12 LDGKRILLTGLLSNRSIAYGIAKACKR-----------EGAELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQID 80 (271)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHH-----------TTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHH
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHH-----------cCCCEEEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHH
Confidence 457889999985 45566666555432 14689999877421 1345889999999987655
Q ss_pred HHHhhcC--CCCccEEeeCCCCCC
Q 030299 110 VVIRHFD--GCKADLVVCDGAPDV 131 (179)
Q Consensus 110 ~l~~~~~--~~~~D~VlsD~~~~~ 131 (179)
++.+... -+++|+|+++.+...
T Consensus 81 ~~~~~~~~~~g~id~lv~nAg~~~ 104 (271)
T 3ek2_A 81 ALFASLKTHWDSLDGLVHSIGFAP 104 (271)
T ss_dssp HHHHHHHHHCSCEEEEEECCCCCC
T ss_pred HHHHHHHHHcCCCCEEEECCccCc
Confidence 5554321 137999999887543
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=84.58 E-value=5.7 Score=31.43 Aligned_cols=78 Identities=10% Similarity=0.014 Sum_probs=50.8
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--C---------------CCCeeEEecccc
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--P---------------IEGVIQVQGDIT 103 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--~---------------~~~v~~i~gDi~ 103 (179)
.++++|=.|++. |.-..+++++.. .+.+|+.+|.++.. . ...+.++++|++
T Consensus 5 ~~k~~lVTGas~-GIG~aia~~la~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~ 72 (274)
T 3e03_A 5 SGKTLFITGASR-GIGLAIALRAAR-----------DGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIR 72 (274)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHH-----------TTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTT
T ss_pred CCcEEEEECCCC-hHHHHHHHHHHH-----------CCCEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence 466788888775 455555544421 14689999887632 0 135778899999
Q ss_pred chhhHHHHHhhcCC--CCccEEeeCCCCC
Q 030299 104 NARTAEVVIRHFDG--CKADLVVCDGAPD 130 (179)
Q Consensus 104 ~~~~~~~l~~~~~~--~~~D~VlsD~~~~ 130 (179)
+.+..+++.+...+ +++|+++++.+..
T Consensus 73 ~~~~v~~~~~~~~~~~g~iD~lvnnAG~~ 101 (274)
T 3e03_A 73 EEDQVRAAVAATVDTFGGIDILVNNASAI 101 (274)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCcc
Confidence 98765555543211 3699999998654
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=84.55 E-value=1.6 Score=34.45 Aligned_cols=78 Identities=13% Similarity=0.017 Sum_probs=51.9
Q ss_pred CCCEEEEEccCC-ChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CCCCeeEEeccccchhhHHH
Q 030299 41 GVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 41 ~g~~VlDLgagp-Gg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~~~~v~~i~gDi~~~~~~~~ 110 (179)
.+++||=.|++. ||.-..+++++.. .+..|+.+|.++-. ...++.++++|+++.+..++
T Consensus 8 ~~k~vlVTGas~~~gIG~~ia~~l~~-----------~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~ 76 (265)
T 1qsg_A 8 SGKRILVTGVASKLSIAYGIAQAMHR-----------EGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDT 76 (265)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHH-----------TTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHH-----------CCCEEEEEcCcHHHHHHHHHHHHhcCCcEEEEccCCCHHHHHH
Confidence 356788888873 6777766665532 14689999887610 11345688999999876655
Q ss_pred HHhhcCC--CCccEEeeCCCC
Q 030299 111 VIRHFDG--CKADLVVCDGAP 129 (179)
Q Consensus 111 l~~~~~~--~~~D~VlsD~~~ 129 (179)
+.+...+ +++|+|+++.+.
T Consensus 77 ~~~~~~~~~g~iD~lv~~Ag~ 97 (265)
T 1qsg_A 77 MFAELGKVWPKFDGFVHSIGF 97 (265)
T ss_dssp HHHHHHTTCSSEEEEEECCCC
T ss_pred HHHHHHHHcCCCCEEEECCCC
Confidence 5543221 369999998864
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.50 E-value=6.8 Score=32.59 Aligned_cols=77 Identities=13% Similarity=0.022 Sum_probs=50.4
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC-----------------CCCeeEEeccccc
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------------IEGVIQVQGDITN 104 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~-----------------~~~v~~i~gDi~~ 104 (179)
|++||=.|++.| .-..+++++.. .+..|+.++.++... -..+.++++|+++
T Consensus 45 gk~vlVTGas~G-IG~aia~~La~-----------~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d 112 (346)
T 3kvo_A 45 GCTVFITGASRG-IGKAIALKAAK-----------DGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRD 112 (346)
T ss_dssp TCEEEEETTTSH-HHHHHHHHHHT-----------TTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTC
T ss_pred CCEEEEeCCChH-HHHHHHHHHHH-----------CCCEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCC
Confidence 677888887755 44444554432 257899998876420 1357788999999
Q ss_pred hhhHHHHHhhcCC--CCccEEeeCCCCC
Q 030299 105 ARTAEVVIRHFDG--CKADLVVCDGAPD 130 (179)
Q Consensus 105 ~~~~~~l~~~~~~--~~~D~VlsD~~~~ 130 (179)
.+..+++.+...+ +++|+|+++.+..
T Consensus 113 ~~~v~~~~~~~~~~~g~iDilVnnAG~~ 140 (346)
T 3kvo_A 113 EQQISAAVEKAIKKFGGIDILVNNASAI 140 (346)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 8765555543211 3699999988643
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=84.34 E-value=1.9 Score=35.74 Aligned_cols=78 Identities=17% Similarity=0.083 Sum_probs=50.2
Q ss_pred CCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------------------------
Q 030299 37 NIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------------------------- 90 (179)
Q Consensus 37 ~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-------------------------- 90 (179)
+....+.+||=.| |+|..-..+++++-. .+..|+++|...-.
T Consensus 6 ~~~~~~~~vlVTG-~tGfIG~~l~~~L~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 73 (404)
T 1i24_A 6 HHHHHGSRVMVIG-GDGYCGWATALHLSK-----------KNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKA 73 (404)
T ss_dssp ------CEEEEET-TTSHHHHHHHHHHHH-----------TTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHH
T ss_pred ccccCCCeEEEeC-CCcHHHHHHHHHHHh-----------CCCeEEEEEecCccccccccccccccccchhhhhhhhHhh
Confidence 3445688898666 558887777766532 14689999864210
Q ss_pred -CCCCeeEEeccccchhhHHHHHhhcCCCCccEEeeCCCC
Q 030299 91 -PIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 91 -~~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
...++.++.+|+++.+...++.+.. .+|+|++.++.
T Consensus 74 ~~~~~v~~~~~Dl~d~~~~~~~~~~~---~~D~Vih~A~~ 110 (404)
T 1i24_A 74 LTGKSIELYVGDICDFEFLAESFKSF---EPDSVVHFGEQ 110 (404)
T ss_dssp HHCCCCEEEESCTTSHHHHHHHHHHH---CCSEEEECCSC
T ss_pred ccCCceEEEECCCCCHHHHHHHHhcc---CCCEEEECCCC
Confidence 0247889999999987666655432 58999998874
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=84.14 E-value=3.3 Score=31.63 Aligned_cols=71 Identities=18% Similarity=0.114 Sum_probs=47.5
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCC--eEEEEeCCCCCC----CCCeeEEeccccchhhHHHHHhhc
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP--LIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIRHF 115 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~--~VvavD~~~~~~----~~~v~~i~gDi~~~~~~~~l~~~~ 115 (179)
+++||=.|++ |+.-..+++++.. .+. .|++++.++... .+++.++++|+++.+..+++.
T Consensus 18 ~~~vlVtGas-g~iG~~l~~~L~~-----------~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~--- 82 (242)
T 2bka_A 18 NKSVFILGAS-GETGRVLLKEILE-----------QGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAF--- 82 (242)
T ss_dssp CCEEEEECTT-SHHHHHHHHHHHH-----------HTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGG---
T ss_pred CCeEEEECCC-cHHHHHHHHHHHc-----------CCCCCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHHh---
Confidence 5678887764 6666655554421 134 899999876431 247889999999987544332
Q ss_pred CCCCccEEeeCCCC
Q 030299 116 DGCKADLVVCDGAP 129 (179)
Q Consensus 116 ~~~~~D~VlsD~~~ 129 (179)
. .+|+|++..+.
T Consensus 83 ~--~~d~vi~~ag~ 94 (242)
T 2bka_A 83 Q--GHDVGFCCLGT 94 (242)
T ss_dssp S--SCSEEEECCCC
T ss_pred c--CCCEEEECCCc
Confidence 2 68999998764
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=83.99 E-value=1.1 Score=35.79 Aligned_cols=79 Identities=13% Similarity=0.050 Sum_probs=52.7
Q ss_pred CCCEEEEEccCC-ChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CCCCCeeEEeccccchhhHHH
Q 030299 41 GVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 41 ~g~~VlDLgagp-Gg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~~~~~v~~i~gDi~~~~~~~~ 110 (179)
.+++||=.|++. ||.-..+++++.. .+.+|+.+|.++. ....++.++++|+++.+..++
T Consensus 20 ~~k~vlVTGas~~~gIG~~ia~~l~~-----------~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~ 88 (285)
T 2p91_A 20 EGKRALITGVANERSIAYGIAKSFHR-----------EGAQLAFTYATPKLEKRVREIAKGFGSDLVVKCDVSLDEDIKN 88 (285)
T ss_dssp TTCEEEECCCSSTTSHHHHHHHHHHH-----------TTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHH
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHH-----------cCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHH
Confidence 467888889873 6676666665532 1468999987752 012357789999999876555
Q ss_pred HHhhcC--CCCccEEeeCCCCC
Q 030299 111 VIRHFD--GCKADLVVCDGAPD 130 (179)
Q Consensus 111 l~~~~~--~~~~D~VlsD~~~~ 130 (179)
+.+... -+++|+|+++.+..
T Consensus 89 ~~~~~~~~~g~iD~lv~~Ag~~ 110 (285)
T 2p91_A 89 LKKFLEENWGSLDIIVHSIAYA 110 (285)
T ss_dssp HHHHHHHHTSCCCEEEECCCCC
T ss_pred HHHHHHHHcCCCCEEEECCCCC
Confidence 544321 13699999998643
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=83.88 E-value=3 Score=34.86 Aligned_cols=72 Identities=18% Similarity=0.105 Sum_probs=43.5
Q ss_pred CCCCCEEEEEccCC-ChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCeeEEecccc--chhhHHHH
Q 030299 39 FEGVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDIT--NARTAEVV 111 (179)
Q Consensus 39 l~~g~~VlDLgagp-Gg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~----~~~v~~i~gDi~--~~~~~~~l 111 (179)
+++|++||=+|||+ |..+..+++..+ ..+|+++|.++.+. --|+..+ .|.. +.+..+.+
T Consensus 191 ~~~g~~VlV~GaG~vG~~a~q~a~~~G-------------a~~Vi~~~~~~~~~~~a~~lGa~~v-i~~~~~~~~~~~~i 256 (378)
T 3uko_A 191 VEPGSNVAIFGLGTVGLAVAEGAKTAG-------------ASRIIGIDIDSKKYETAKKFGVNEF-VNPKDHDKPIQEVI 256 (378)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHHT-------------CSCEEEECSCTTHHHHHHTTTCCEE-ECGGGCSSCHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-------------CCeEEEEcCCHHHHHHHHHcCCcEE-EccccCchhHHHHH
Confidence 47899999999865 555666677665 24899999888521 1243221 2222 22334445
Q ss_pred HhhcCCCCccEEee
Q 030299 112 IRHFDGCKADLVVC 125 (179)
Q Consensus 112 ~~~~~~~~~D~Vls 125 (179)
.+...+ ++|+|+-
T Consensus 257 ~~~~~g-g~D~vid 269 (378)
T 3uko_A 257 VDLTDG-GVDYSFE 269 (378)
T ss_dssp HHHTTS-CBSEEEE
T ss_pred HHhcCC-CCCEEEE
Confidence 544444 7888874
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=83.87 E-value=7 Score=30.73 Aligned_cols=81 Identities=17% Similarity=0.045 Sum_probs=51.2
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------------------CCCCeeEE
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------------------PIEGVIQV 98 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------------------~~~~v~~i 98 (179)
.+++||=-|++.| .-..+++++.. .+..|+.+|.++-. .-..+.++
T Consensus 9 ~gk~vlVTGas~g-IG~~ia~~l~~-----------~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (287)
T 3pxx_A 9 QDKVVLVTGGARG-QGRSHAVKLAE-----------EGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTA 76 (287)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHH-----------TTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEE
T ss_pred CCCEEEEeCCCCh-HHHHHHHHHHH-----------CCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEE
Confidence 3667888887755 44444444432 15789999986210 12367889
Q ss_pred eccccchhhHHHHHhhcC--CCCccEEeeCCCCCCCC
Q 030299 99 QGDITNARTAEVVIRHFD--GCKADLVVCDGAPDVTG 133 (179)
Q Consensus 99 ~gDi~~~~~~~~l~~~~~--~~~~D~VlsD~~~~~~g 133 (179)
++|+++.+..+++.+... -+++|+|+++.+....+
T Consensus 77 ~~D~~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~ 113 (287)
T 3pxx_A 77 EVDVRDRAAVSRELANAVAEFGKLDVVVANAGICPLG 113 (287)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCC
T ss_pred EccCCCHHHHHHHHHHHHHHcCCCCEEEECCCcCccc
Confidence 999999876555544321 13699999998754433
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=83.87 E-value=9.3 Score=29.94 Aligned_cols=76 Identities=12% Similarity=0.138 Sum_probs=49.6
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCeeEEeccccchhhHHHHHhhcC--CCC
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFD--GCK 119 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~~~~v~~i~gDi~~~~~~~~l~~~~~--~~~ 119 (179)
+++||=.|++. |.-..+++++.. ....|+.++.++.. ...+.++++|+++.+..+++.+... -++
T Consensus 21 ~k~vlVTGas~-gIG~aia~~l~~-----------~G~~V~~~~r~~~~-~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~ 87 (253)
T 2nm0_A 21 SRSVLVTGGNR-GIGLAIARAFAD-----------AGDKVAITYRSGEP-PEGFLAVKCDITDTEQVEQAYKEIEETHGP 87 (253)
T ss_dssp CCEEEEETTTS-HHHHHHHHHHHH-----------TTCEEEEEESSSCC-CTTSEEEECCTTSHHHHHHHHHHHHHHTCS
T ss_pred CCEEEEeCCCC-HHHHHHHHHHHH-----------CCCEEEEEeCChHh-hccceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 56788888764 555555554421 14689999887643 3458889999999876555443321 136
Q ss_pred ccEEeeCCCCC
Q 030299 120 ADLVVCDGAPD 130 (179)
Q Consensus 120 ~D~VlsD~~~~ 130 (179)
+|+|+++.+..
T Consensus 88 iD~lv~nAg~~ 98 (253)
T 2nm0_A 88 VEVLIANAGVT 98 (253)
T ss_dssp CSEEEEECSCC
T ss_pred CCEEEECCCCC
Confidence 89999987643
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=83.70 E-value=9.2 Score=29.60 Aligned_cols=78 Identities=5% Similarity=-0.012 Sum_probs=52.8
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCC---CeEEEEeCCCCCC---------CCCeeEEeccccchhhH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDL---PLIVAIDLQPMAP---------IEGVIQVQGDITNARTA 108 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~---~~VvavD~~~~~~---------~~~v~~i~gDi~~~~~~ 108 (179)
++++||=.|++ |+.-..+++++.. .. ..|+.++.++... ..++.++.+|+++.+..
T Consensus 20 ~~k~vlITGas-ggIG~~la~~L~~-----------~G~~~~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v 87 (267)
T 1sny_A 20 HMNSILITGCN-RGLGLGLVKALLN-----------LPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAY 87 (267)
T ss_dssp CCSEEEESCCS-SHHHHHHHHHHHT-----------SSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGH
T ss_pred CCCEEEEECCC-CcHHHHHHHHHHh-----------cCCCCcEEEEEecChhhhHHHHHhhccCCceEEEEecCCChHHH
Confidence 35678877765 6666666666542 13 6899999876421 23788999999998766
Q ss_pred HHHHhhc----CCCCccEEeeCCCCC
Q 030299 109 EVVIRHF----DGCKADLVVCDGAPD 130 (179)
Q Consensus 109 ~~l~~~~----~~~~~D~VlsD~~~~ 130 (179)
+++.+.+ ....+|+|++..+..
T Consensus 88 ~~~~~~~~~~~g~~~id~li~~Ag~~ 113 (267)
T 1sny_A 88 DKLVADIEGVTKDQGLNVLFNNAGIA 113 (267)
T ss_dssp HHHHHHHHHHHGGGCCSEEEECCCCC
T ss_pred HHHHHHHHHhcCCCCccEEEECCCcC
Confidence 6555432 212699999988643
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=83.68 E-value=1.2 Score=36.61 Aligned_cols=75 Identities=8% Similarity=0.011 Sum_probs=46.4
Q ss_pred CCCCCEEEEEccCCChH-HHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCeeEEeccccchhhHHHHHh
Q 030299 39 FEGVKRVVDLCAAPGSW-SQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~-s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~----~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
+++|++||=+|||++|- ...++...+ ..+|+++|.++.+. -.|... .-|..+.+..+++.+
T Consensus 161 ~~~g~~VlV~GaG~~g~~a~~~a~~~~-------------g~~Vi~~~~~~~r~~~~~~~Ga~~-~i~~~~~~~~~~v~~ 226 (348)
T 4eez_A 161 VKPGDWQVIFGAGGLGNLAIQYAKNVF-------------GAKVIAVDINQDKLNLAKKIGADV-TINSGDVNPVDEIKK 226 (348)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTS-------------CCEEEEEESCHHHHHHHHHTTCSE-EEEC-CCCHHHHHHH
T ss_pred CCCCCEEEEEcCCCccHHHHHHHHHhC-------------CCEEEEEECcHHHhhhhhhcCCeE-EEeCCCCCHHHHhhh
Confidence 47899999999998654 334444443 47999999987421 113221 123344445566666
Q ss_pred hcCCCCccEEeeCC
Q 030299 114 HFDGCKADLVVCDG 127 (179)
Q Consensus 114 ~~~~~~~D~VlsD~ 127 (179)
...+..+|.++-+.
T Consensus 227 ~t~g~g~d~~~~~~ 240 (348)
T 4eez_A 227 ITGGLGVQSAIVCA 240 (348)
T ss_dssp HTTSSCEEEEEECC
T ss_pred hcCCCCceEEEEec
Confidence 66666788887654
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=83.48 E-value=9.1 Score=30.66 Aligned_cols=72 Identities=17% Similarity=0.137 Sum_probs=47.6
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~~~ 110 (179)
+++||=.| |+|..-.++++++-. .+..|++++.++.. ...+++++++|+++.+...+
T Consensus 9 ~~~vlVTG-atGfIG~~l~~~Ll~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~ 76 (338)
T 2rh8_A 9 KKTACVVG-GTGFVASLLVKLLLQ-----------KGYAVNTTVRDPDNQKKVSHLLELQELGDLKIFRADLTDELSFEA 76 (338)
T ss_dssp CCEEEEEC-TTSHHHHHHHHHHHH-----------TTCEEEEEESCTTCTTTTHHHHHHGGGSCEEEEECCTTTSSSSHH
T ss_pred CCEEEEEC-CchHHHHHHHHHHHH-----------CCCEEEEEEcCcchhhhHHHHHhcCCCCcEEEEecCCCChHHHHH
Confidence 56787666 677777777766532 14678887655421 01368899999999776554
Q ss_pred HHhhcCCCCccEEeeCCCCC
Q 030299 111 VIRHFDGCKADLVVCDGAPD 130 (179)
Q Consensus 111 l~~~~~~~~~D~VlsD~~~~ 130 (179)
+.+ .+|+|++..++.
T Consensus 77 ~~~-----~~D~Vih~A~~~ 91 (338)
T 2rh8_A 77 PIA-----GCDFVFHVATPV 91 (338)
T ss_dssp HHT-----TCSEEEEESSCC
T ss_pred HHc-----CCCEEEEeCCcc
Confidence 432 589999987653
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=83.31 E-value=3.4 Score=32.32 Aligned_cols=79 Identities=18% Similarity=0.140 Sum_probs=49.5
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC-------CCCeeEEeccccchhhHHHHHh
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-------IEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~-------~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
.++++|=-|++.| .-..+++++.. .+..|+.+|.++... ...+.++++|+++.+..+++.+
T Consensus 6 ~~k~~lVTGas~g-IG~aia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 73 (257)
T 3tpc_A 6 KSRVFIVTGASSG-LGAAVTRMLAQ-----------EGATVLGLDLKPPAGEEPAAELGAAVRFRNADVTNEADATAALA 73 (257)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHH-----------TTCEEEEEESSCC------------CEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHH-----------CCCEEEEEeCChHHHHHHHHHhCCceEEEEccCCCHHHHHHHHH
Confidence 4567787787654 55555554432 147899999876421 1357889999999876555544
Q ss_pred hcC--CCCccEEeeCCCCCC
Q 030299 114 HFD--GCKADLVVCDGAPDV 131 (179)
Q Consensus 114 ~~~--~~~~D~VlsD~~~~~ 131 (179)
... -+++|+++++.+...
T Consensus 74 ~~~~~~g~id~lv~nAg~~~ 93 (257)
T 3tpc_A 74 FAKQEFGHVHGLVNCAGTAP 93 (257)
T ss_dssp HHHHHHSCCCEEEECCCCCC
T ss_pred HHHHHcCCCCEEEECCCCCC
Confidence 321 136999999887543
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=83.24 E-value=9 Score=30.21 Aligned_cols=79 Identities=13% Similarity=0.024 Sum_probs=50.7
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------------------CCCCeeEE
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------------------PIEGVIQV 98 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------------------~~~~v~~i 98 (179)
.++++|=-|++.| .-..+++++.. .+.+|+.+|.++.. ....+.++
T Consensus 9 ~~k~~lVTGas~g-IG~a~a~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (281)
T 3s55_A 9 EGKTALITGGARG-MGRSHAVALAE-----------AGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISA 76 (281)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHH-----------TTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHH-----------CCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEE
Confidence 3667888887754 55555554431 15789999986311 12467889
Q ss_pred eccccchhhHHHHHhhcC--CCCccEEeeCCCCCC
Q 030299 99 QGDITNARTAEVVIRHFD--GCKADLVVCDGAPDV 131 (179)
Q Consensus 99 ~gDi~~~~~~~~l~~~~~--~~~~D~VlsD~~~~~ 131 (179)
++|+++.+..+++.+... -+++|+++++.+...
T Consensus 77 ~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~ 111 (281)
T 3s55_A 77 KVDVKDRAALESFVAEAEDTLGGIDIAITNAGIST 111 (281)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHTCCCEEEECCCCCC
T ss_pred eCCCCCHHHHHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 999999876555554321 136999999887543
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A | Back alignment and structure |
|---|
Probab=83.24 E-value=2.7 Score=32.94 Aligned_cols=80 Identities=9% Similarity=-0.073 Sum_probs=52.4
Q ss_pred CCCEEEEEccCC-ChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC------------CCCeeEEeccccchhh
Q 030299 41 GVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------------IEGVIQVQGDITNART 107 (179)
Q Consensus 41 ~g~~VlDLgagp-Gg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~------------~~~v~~i~gDi~~~~~ 107 (179)
.+++||=.|++. ||.-..+++++.. .+..|+.++.++... ...+.++++|+++.+.
T Consensus 19 ~~k~vlITGas~~~giG~~~a~~l~~-----------~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~ 87 (267)
T 3gdg_A 19 KGKVVVVTGASGPKGMGIEAARGCAE-----------MGAAVAITYASRAQGAEENVKELEKTYGIKAKAYKCQVDSYES 87 (267)
T ss_dssp TTCEEEETTCCSSSSHHHHHHHHHHH-----------TSCEEEECBSSSSSHHHHHHHHHHHHHCCCEECCBCCTTCHHH
T ss_pred CCCEEEEECCCCCCChHHHHHHHHHH-----------CCCeEEEEeCCcchhHHHHHHHHHHhcCCceeEEecCCCCHHH
Confidence 467888888873 5566655555432 146888888775321 2467888999999876
Q ss_pred HHHHHhhcC--CCCccEEeeCCCCCC
Q 030299 108 AEVVIRHFD--GCKADLVVCDGAPDV 131 (179)
Q Consensus 108 ~~~l~~~~~--~~~~D~VlsD~~~~~ 131 (179)
.+++.+... -+++|+|+++.+...
T Consensus 88 v~~~~~~~~~~~g~id~li~nAg~~~ 113 (267)
T 3gdg_A 88 CEKLVKDVVADFGQIDAFIANAGATA 113 (267)
T ss_dssp HHHHHHHHHHHTSCCSEEEECCCCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcCC
Confidence 555554321 136899999886543
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=83.23 E-value=1.6 Score=32.73 Aligned_cols=74 Identities=19% Similarity=0.144 Sum_probs=43.6
Q ss_pred CCCCCEEEEEccCC--ChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCeeEEeccccchhhHHHHH
Q 030299 39 FEGVKRVVDLCAAP--GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVI 112 (179)
Q Consensus 39 l~~g~~VlDLgagp--Gg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----~~~~v~~i~gDi~~~~~~~~l~ 112 (179)
+++|++||..|++. |.....++...+ .+|+++|.++.. .-.|... ..|..+.+..+.+.
T Consensus 36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G--------------~~V~~~~~~~~~~~~~~~~g~~~-~~d~~~~~~~~~~~ 100 (198)
T 1pqw_A 36 LSPGERVLIHSATGGVGMAAVSIAKMIG--------------ARIYTTAGSDAKREMLSRLGVEY-VGDSRSVDFADEIL 100 (198)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHHT--------------CEEEEEESSHHHHHHHHTTCCSE-EEETTCSTHHHHHH
T ss_pred CCCCCEEEEeeCCChHHHHHHHHHHHcC--------------CEEEEEeCCHHHHHHHHHcCCCE-EeeCCcHHHHHHHH
Confidence 47899999999643 333333344443 689999987631 0123322 23555555555555
Q ss_pred hhcCCCCccEEeeCC
Q 030299 113 RHFDGCKADLVVCDG 127 (179)
Q Consensus 113 ~~~~~~~~D~VlsD~ 127 (179)
+...+.++|+|+...
T Consensus 101 ~~~~~~~~D~vi~~~ 115 (198)
T 1pqw_A 101 ELTDGYGVDVVLNSL 115 (198)
T ss_dssp HHTTTCCEEEEEECC
T ss_pred HHhCCCCCeEEEECC
Confidence 544445799998754
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=83.22 E-value=7.9 Score=31.55 Aligned_cols=72 Identities=25% Similarity=0.230 Sum_probs=50.1
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----CCCCeeEEecccc-chhhHHHHHhhc
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----PIEGVIQVQGDIT-NARTAEVVIRHF 115 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----~~~~v~~i~gDi~-~~~~~~~l~~~~ 115 (179)
+++||=.| |+|.....+++++-. .++..|++++.++.. ..++++++++|++ +.+...++.+
T Consensus 24 ~~~vlVtG-atG~iG~~l~~~L~~----------~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~-- 90 (372)
T 3slg_A 24 AKKVLILG-VNGFIGHHLSKRILE----------TTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVK-- 90 (372)
T ss_dssp CCEEEEES-CSSHHHHHHHHHHHH----------HSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHH--
T ss_pred CCEEEEEC-CCChHHHHHHHHHHh----------CCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhc--
Confidence 45788666 567777777665521 013689999988743 1368999999999 8776655543
Q ss_pred CCCCccEEeeCCCC
Q 030299 116 DGCKADLVVCDGAP 129 (179)
Q Consensus 116 ~~~~~D~VlsD~~~ 129 (179)
++|+|++-++.
T Consensus 91 ---~~d~Vih~A~~ 101 (372)
T 3slg_A 91 ---KCDVILPLVAI 101 (372)
T ss_dssp ---HCSEEEECBCC
T ss_pred ---cCCEEEEcCcc
Confidence 58999997764
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=82.73 E-value=5.3 Score=30.67 Aligned_cols=77 Identities=10% Similarity=0.038 Sum_probs=50.0
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCC-CCCC----------CCCeeEEeccccchhhHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQ-PMAP----------IEGVIQVQGDITNARTAE 109 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~-~~~~----------~~~v~~i~gDi~~~~~~~ 109 (179)
.+++||=.|++ |+.-..+++++.. .+..|+++|.+ +... ..++.++++|+++.+..+
T Consensus 6 ~~k~vlVTGas-ggiG~~~a~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 73 (258)
T 3afn_B 6 KGKRVLITGSS-QGIGLATARLFAR-----------AGAKVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQ 73 (258)
T ss_dssp TTCEEEETTCS-SHHHHHHHHHHHH-----------TTCEEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHHHHH
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHH-----------CCCEEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCHHHHH
Confidence 35677866765 6666666665532 14689999987 4210 236888999999987655
Q ss_pred HHHhhcC--CCCccEEeeCCCC
Q 030299 110 VVIRHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 110 ~l~~~~~--~~~~D~VlsD~~~ 129 (179)
++.+... -+++|+|++..+.
T Consensus 74 ~~~~~~~~~~g~id~vi~~Ag~ 95 (258)
T 3afn_B 74 QLVDEFVAKFGGIDVLINNAGG 95 (258)
T ss_dssp HHHHHHHHHHSSCSEEEECCCC
T ss_pred HHHHHHHHHcCCCCEEEECCCC
Confidence 5544221 1269999998864
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=82.70 E-value=4 Score=32.77 Aligned_cols=76 Identities=12% Similarity=0.014 Sum_probs=51.2
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCeeEEeccccchhhHHHHHhhcC--CC
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFD--GC 118 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~~~~v~~i~gDi~~~~~~~~l~~~~~--~~ 118 (179)
+|+++|=-|++.|.- ..+++++.. .+.+|+.+|.+..+......++++|+++.+..+++.+... -+
T Consensus 10 ~GK~alVTGas~GIG-~aia~~la~-----------~Ga~V~~~~r~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 77 (261)
T 4h15_A 10 RGKRALITAGTKGAG-AATVSLFLE-----------LGAQVLTTARARPEGLPEELFVEADLTTKEGCAIVAEATRQRLG 77 (261)
T ss_dssp TTCEEEESCCSSHHH-HHHHHHHHH-----------TTCEEEEEESSCCTTSCTTTEEECCTTSHHHHHHHHHHHHHHTS
T ss_pred CCCEEEEeccCcHHH-HHHHHHHHH-----------cCCEEEEEECCchhCCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 577888878776644 444444321 2578999998876655566688999999876555444321 13
Q ss_pred CccEEeeCCC
Q 030299 119 KADLVVCDGA 128 (179)
Q Consensus 119 ~~D~VlsD~~ 128 (179)
.+|+++++..
T Consensus 78 ~iDilVnnAG 87 (261)
T 4h15_A 78 GVDVIVHMLG 87 (261)
T ss_dssp SCSEEEECCC
T ss_pred CCCEEEECCC
Confidence 6999999865
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=82.56 E-value=4.3 Score=33.52 Aligned_cols=72 Identities=15% Similarity=-0.003 Sum_probs=49.7
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCC-CeEEEEeCCCCCC------CCCeeEEeccccchhhHHHHHh
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDL-PLIVAIDLQPMAP------IEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~-~~VvavD~~~~~~------~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
.+++||=.|+ +|.....+++++-. .+ ..|++++..+... .++++++++|+++.+..+++
T Consensus 31 ~~~~ilVtGa-tG~iG~~l~~~L~~-----------~g~~~V~~~~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~~-- 96 (377)
T 2q1s_A 31 ANTNVMVVGG-AGFVGSNLVKRLLE-----------LGVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDALLASL-- 96 (377)
T ss_dssp TTCEEEEETT-TSHHHHHHHHHHHH-----------TTCSEEEEECCCTTCCGGGSCCCTTEEEECSCTTCHHHHHHC--
T ss_pred CCCEEEEECC-ccHHHHHHHHHHHH-----------cCCceEEEEECCCCCchhhccCCCceEEEECCCCCHHHHHHH--
Confidence 3567887775 57777777666532 13 6899999876431 35799999999997654433
Q ss_pred hcCCCCccEEeeCCCC
Q 030299 114 HFDGCKADLVVCDGAP 129 (179)
Q Consensus 114 ~~~~~~~D~VlsD~~~ 129 (179)
+ ..+|+|++.++.
T Consensus 97 -~--~~~d~Vih~A~~ 109 (377)
T 2q1s_A 97 -Q--DEYDYVFHLATY 109 (377)
T ss_dssp -C--SCCSEEEECCCC
T ss_pred -h--hCCCEEEECCCc
Confidence 2 268999998764
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=82.53 E-value=3.8 Score=33.10 Aligned_cols=79 Identities=13% Similarity=-0.047 Sum_probs=52.1
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~~ 110 (179)
.+.+||=.|++. |.-..+++++.. .+..|+.+|.++.. ...++.++++|+++.+..++
T Consensus 30 ~gk~vlVTGas~-gIG~~la~~l~~-----------~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~ 97 (301)
T 3tjr_A 30 DGRAAVVTGGAS-GIGLATATEFAR-----------RGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVR 97 (301)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHH-----------TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHH-----------CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHH
Confidence 467888888875 455555554421 14689999987631 12468889999999876655
Q ss_pred HHhhcC--CCCccEEeeCCCCCC
Q 030299 111 VIRHFD--GCKADLVVCDGAPDV 131 (179)
Q Consensus 111 l~~~~~--~~~~D~VlsD~~~~~ 131 (179)
+.+... -+++|+|+++.+...
T Consensus 98 ~~~~~~~~~g~id~lvnnAg~~~ 120 (301)
T 3tjr_A 98 LADEAFRLLGGVDVVFSNAGIVV 120 (301)
T ss_dssp HHHHHHHHHSSCSEEEECCCCCC
T ss_pred HHHHHHHhCCCCCEEEECCCcCC
Confidence 554321 136999999987543
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=82.50 E-value=5.4 Score=31.35 Aligned_cols=78 Identities=10% Similarity=-0.005 Sum_probs=50.1
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------------CCCCeeEEeccccchhhH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------------~~~~v~~i~gDi~~~~~~ 108 (179)
.++++|=-|++.| .-..+++++.. .+..|+.+|.++.. +...+.++++|+++.+..
T Consensus 7 ~~k~~lVTGas~G-IG~aia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v 74 (265)
T 3lf2_A 7 SEAVAVVTGGSSG-IGLATVELLLE-----------AGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQV 74 (265)
T ss_dssp TTCEEEEETCSSH-HHHHHHHHHHH-----------TTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHH
T ss_pred CCCEEEEeCCCCh-HHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHH
Confidence 4667888887755 44444444421 14689999987631 122488899999998765
Q ss_pred HHHHhhcC--CCCccEEeeCCCCC
Q 030299 109 EVVIRHFD--GCKADLVVCDGAPD 130 (179)
Q Consensus 109 ~~l~~~~~--~~~~D~VlsD~~~~ 130 (179)
+++.+... -+++|+++++.+..
T Consensus 75 ~~~~~~~~~~~g~id~lvnnAg~~ 98 (265)
T 3lf2_A 75 RAFAEACERTLGCASILVNNAGQG 98 (265)
T ss_dssp HHHHHHHHHHHCSCSEEEECCCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCCC
Confidence 55544321 13689999988753
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=82.21 E-value=1.2 Score=36.91 Aligned_cols=73 Identities=19% Similarity=0.206 Sum_probs=43.6
Q ss_pred CCCCCEEEEEccCC-ChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCeeEEecccc---chhhHHH
Q 030299 39 FEGVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDIT---NARTAEV 110 (179)
Q Consensus 39 l~~g~~VlDLgagp-Gg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----~~~~v~~i~gDi~---~~~~~~~ 110 (179)
+++|++||-+|||+ |..+..+++..+ ..+|+++|.++.+ .--|+..+ .|.. +.+..++
T Consensus 169 ~~~g~~VlV~GaG~vG~~aiqlak~~G-------------a~~Vi~~~~~~~~~~~a~~lGa~~v-i~~~~~~~~~~~~~ 234 (356)
T 1pl8_A 169 VTLGHKVLVCGAGPIGMVTLLVAKAMG-------------AAQVVVTDLSATRLSKAKEIGADLV-LQISKESPQEIARK 234 (356)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-------------CSEEEEEESCHHHHHHHHHTTCSEE-EECSSCCHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-------------CCEEEEECCCHHHHHHHHHhCCCEE-EcCcccccchHHHH
Confidence 47899999999876 555666666654 2389999988732 01233211 1222 1333444
Q ss_pred HHhhcCCCCccEEeeC
Q 030299 111 VIRHFDGCKADLVVCD 126 (179)
Q Consensus 111 l~~~~~~~~~D~VlsD 126 (179)
+.+... +++|+|+-.
T Consensus 235 i~~~~~-~g~D~vid~ 249 (356)
T 1pl8_A 235 VEGQLG-CKPEVTIEC 249 (356)
T ss_dssp HHHHHT-SCCSEEEEC
T ss_pred HHHHhC-CCCCEEEEC
Confidence 544444 579998854
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=82.15 E-value=4.2 Score=31.52 Aligned_cols=78 Identities=13% Similarity=0.028 Sum_probs=51.8
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC-------CCCeeEEeccccchhhHHHHHh
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-------IEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~-------~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
.+++||=.|++ |+.-..+++++.. ....|+.+|.++... ..++.++++|+++.+..+++.+
T Consensus 11 ~~k~vlVTGas-ggiG~~~a~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 78 (265)
T 2o23_A 11 KGLVAVITGGA-SGLGLATAERLVG-----------QGASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTSEKDVQTALA 78 (265)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHH-----------TTCEEEEEECTTSSHHHHHHHHCTTEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHH-----------CCCEEEEEeCCcHhHHHHHHHhCCceEEEEcCCCCHHHHHHHHH
Confidence 45678888876 5666666655532 146899999876421 1368889999999876555544
Q ss_pred hcC--CCCccEEeeCCCCC
Q 030299 114 HFD--GCKADLVVCDGAPD 130 (179)
Q Consensus 114 ~~~--~~~~D~VlsD~~~~ 130 (179)
... -+++|+|++..+..
T Consensus 79 ~~~~~~g~id~li~~Ag~~ 97 (265)
T 2o23_A 79 LAKGKFGRVDVAVNCAGIA 97 (265)
T ss_dssp HHHHHHSCCCEEEECCCCC
T ss_pred HHHHHCCCCCEEEECCccC
Confidence 221 13699999988654
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=81.85 E-value=6.3 Score=30.81 Aligned_cols=77 Identities=14% Similarity=0.151 Sum_probs=49.5
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~~l 111 (179)
+++||=.|++ ||.-..+++++.. .+.+|+.+|.++.. ....+.++++|+++.+..+++
T Consensus 6 ~k~vlVTGas-~gIG~aia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~ 73 (257)
T 3imf_A 6 EKVVIITGGS-SGMGKGMATRFAK-----------EGARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKM 73 (257)
T ss_dssp TCEEEETTTT-SHHHHHHHHHHHH-----------TTCEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHH
T ss_pred CCEEEEECCC-CHHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHH
Confidence 5677777766 4555555554421 14789999987621 123688899999998765555
Q ss_pred HhhcC--CCCccEEeeCCCCC
Q 030299 112 IRHFD--GCKADLVVCDGAPD 130 (179)
Q Consensus 112 ~~~~~--~~~~D~VlsD~~~~ 130 (179)
.+... -+++|+++++.+..
T Consensus 74 ~~~~~~~~g~id~lv~nAg~~ 94 (257)
T 3imf_A 74 IEQIDEKFGRIDILINNAAGN 94 (257)
T ss_dssp HHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHcCCCCEEEECCCCC
Confidence 54321 13689999988643
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=81.85 E-value=2.5 Score=35.01 Aligned_cols=69 Identities=12% Similarity=0.065 Sum_probs=48.5
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CCCCCeeEEeccccchhhHHHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAEVVI 112 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~~~~~v~~i~gDi~~~~~~~~l~ 112 (179)
+..+||+=+|+|.....+..+ ..+++.||..+. +...++.++++|....- ..+.
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS~---------------~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L--~~l~ 154 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLRS---------------QDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKL--NALL 154 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSCT---------------TSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHH--HHHC
T ss_pred CCCceeEeCCcHHHHHHHcCC---------------CCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHH--HHhc
Confidence 456899999999998887663 368999999983 12246788888876531 1111
Q ss_pred hhcCCCCccEEeeCCCC
Q 030299 113 RHFDGCKADLVVCDGAP 129 (179)
Q Consensus 113 ~~~~~~~~D~VlsD~~~ 129 (179)
. +..++|+|+.|.+.
T Consensus 155 ~--~~~~fdLVfiDPPY 169 (283)
T 2oo3_A 155 P--PPEKRGLIFIDPSY 169 (283)
T ss_dssp S--CTTSCEEEEECCCC
T ss_pred C--CCCCccEEEECCCC
Confidence 1 23469999999764
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=81.83 E-value=6.3 Score=29.31 Aligned_cols=68 Identities=13% Similarity=0.009 Sum_probs=46.4
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC---CCCeeEEeccccchhhHHHHHhhcCCCCc
Q 030299 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP---IEGVIQVQGDITNARTAEVVIRHFDGCKA 120 (179)
Q Consensus 44 ~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~---~~~v~~i~gDi~~~~~~~~l~~~~~~~~~ 120 (179)
+||=.|+ +|+.-..+++++-. .+..|++++.++... .++++++++|+++.+. + .+ ..+
T Consensus 2 kvlVtGa-tG~iG~~l~~~L~~-----------~g~~V~~~~R~~~~~~~~~~~~~~~~~D~~d~~~-~----~~--~~~ 62 (221)
T 3ew7_A 2 KIGIIGA-TGRAGSRILEEAKN-----------RGHEVTAIVRNAGKITQTHKDINILQKDIFDLTL-S----DL--SDQ 62 (221)
T ss_dssp EEEEETT-TSHHHHHHHHHHHH-----------TTCEEEEEESCSHHHHHHCSSSEEEECCGGGCCH-H----HH--TTC
T ss_pred eEEEEcC-CchhHHHHHHHHHh-----------CCCEEEEEEcCchhhhhccCCCeEEeccccChhh-h----hh--cCC
Confidence 4555554 56666666665532 146899999887321 1689999999999875 2 23 358
Q ss_pred cEEeeCCCCC
Q 030299 121 DLVVCDGAPD 130 (179)
Q Consensus 121 D~VlsD~~~~ 130 (179)
|+|++..++.
T Consensus 63 d~vi~~ag~~ 72 (221)
T 3ew7_A 63 NVVVDAYGIS 72 (221)
T ss_dssp SEEEECCCSS
T ss_pred CEEEECCcCC
Confidence 9999988763
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=81.80 E-value=7.3 Score=29.94 Aligned_cols=78 Identities=9% Similarity=-0.011 Sum_probs=51.2
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~~l 111 (179)
+++||=.|++ ||.-..+++++.. .+.+|+.++.++.. ....+.++++|+++.+..+++
T Consensus 5 ~k~vlITGas-~gIG~~~a~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 72 (247)
T 3lyl_A 5 EKVALVTGAS-RGIGFEVAHALAS-----------KGATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNF 72 (247)
T ss_dssp TCEEEESSCS-SHHHHHHHHHHHH-----------TTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHH
T ss_pred CCEEEEECCC-ChHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHH
Confidence 5677777765 5555555554432 14789999987631 124688899999998866665
Q ss_pred HhhcC--CCCccEEeeCCCCCC
Q 030299 112 IRHFD--GCKADLVVCDGAPDV 131 (179)
Q Consensus 112 ~~~~~--~~~~D~VlsD~~~~~ 131 (179)
.+... .+++|+|++..+...
T Consensus 73 ~~~~~~~~~~id~li~~Ag~~~ 94 (247)
T 3lyl_A 73 FAEIKAENLAIDILVNNAGITR 94 (247)
T ss_dssp HHHHHHTTCCCSEEEECCCCCC
T ss_pred HHHHHHHcCCCCEEEECCCCCC
Confidence 54331 246999999987543
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=81.78 E-value=2.7 Score=34.77 Aligned_cols=75 Identities=15% Similarity=0.146 Sum_probs=45.0
Q ss_pred CCCCCEEEEEccCC-ChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----CC-CCeeEEeccc-cchhhHHH
Q 030299 39 FEGVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----PI-EGVIQVQGDI-TNARTAEV 110 (179)
Q Consensus 39 l~~g~~VlDLgagp-Gg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----~~-~~v~~i~gDi-~~~~~~~~ 110 (179)
+++|++||=+|||+ |..+..+++..+ ...|+++|.++.+ .+ ..+.....|- .+.+..++
T Consensus 177 ~~~g~~VlV~GaG~vG~~aiqlak~~G-------------a~~Vi~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~ 243 (363)
T 3m6i_A 177 VRLGDPVLICGAGPIGLITMLCAKAAG-------------ACPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKK 243 (363)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHTT-------------CCSEEEEESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-------------CCEEEEECCCHHHHHHHHHhchhcccccccccchHHHHHH
Confidence 48899999999866 555566666654 2349999988732 11 1222222221 12334455
Q ss_pred HHhhcCCCCccEEeeC
Q 030299 111 VIRHFDGCKADLVVCD 126 (179)
Q Consensus 111 l~~~~~~~~~D~VlsD 126 (179)
+.+...+.++|+|+-.
T Consensus 244 v~~~t~g~g~Dvvid~ 259 (363)
T 3m6i_A 244 IVESFGGIEPAVALEC 259 (363)
T ss_dssp HHHHTSSCCCSEEEEC
T ss_pred HHHHhCCCCCCEEEEC
Confidence 6655556789999853
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=81.71 E-value=1.1 Score=37.16 Aligned_cols=74 Identities=14% Similarity=0.103 Sum_probs=43.1
Q ss_pred CCCCCEEEEEccCC-ChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCeeEEeccccc-hhhHHHHH
Q 030299 39 FEGVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITN-ARTAEVVI 112 (179)
Q Consensus 39 l~~g~~VlDLgagp-Gg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----~~~~v~~i~gDi~~-~~~~~~l~ 112 (179)
+++|++||-+|||+ |..+..+++..+ .+|+++|.++.+ .--|+..+ .|..+ .+..+++.
T Consensus 166 ~~~g~~VlV~GaG~vG~~a~qla~~~G--------------a~Vi~~~~~~~~~~~~~~lGa~~~-~~~~~~~~~~~~i~ 230 (352)
T 1e3j_A 166 VQLGTTVLVIGAGPIGLVSVLAAKAYG--------------AFVVCTARSPRRLEVAKNCGADVT-LVVDPAKEEESSII 230 (352)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESCHHHHHHHHHTTCSEE-EECCTTTSCHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--------------CEEEEEcCCHHHHHHHHHhCCCEE-EcCcccccHHHHHH
Confidence 47899999999865 455555666654 579999988632 01233211 23332 33334444
Q ss_pred hhcC---CCCccEEeeCC
Q 030299 113 RHFD---GCKADLVVCDG 127 (179)
Q Consensus 113 ~~~~---~~~~D~VlsD~ 127 (179)
+... +.++|+|+-..
T Consensus 231 ~~~~~~~g~g~D~vid~~ 248 (352)
T 1e3j_A 231 ERIRSAIGDLPNVTIDCS 248 (352)
T ss_dssp HHHHHHSSSCCSEEEECS
T ss_pred HHhccccCCCCCEEEECC
Confidence 4333 35799988643
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=81.71 E-value=1.1 Score=37.42 Aligned_cols=73 Identities=11% Similarity=-0.047 Sum_probs=44.3
Q ss_pred CCCCCEEEEEccCC-ChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCeeEEeccccchhhHHHHHh
Q 030299 39 FEGVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 39 l~~g~~VlDLgagp-Gg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~----~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
+++|++||=+|+|+ |..+..+++..+ .+|+++|.++.+. --|+..+ .|-.+.+..+++.+
T Consensus 187 ~~~g~~VlV~G~G~vG~~a~qla~~~G--------------a~Vi~~~~~~~~~~~~~~lGa~~v-i~~~~~~~~~~v~~ 251 (363)
T 3uog_A 187 LRAGDRVVVQGTGGVALFGLQIAKATG--------------AEVIVTSSSREKLDRAFALGADHG-INRLEEDWVERVYA 251 (363)
T ss_dssp CCTTCEEEEESSBHHHHHHHHHHHHTT--------------CEEEEEESCHHHHHHHHHHTCSEE-EETTTSCHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--------------CEEEEEecCchhHHHHHHcCCCEE-EcCCcccHHHHHHH
Confidence 47899999999776 555556666654 6899999886320 0133222 12111233445555
Q ss_pred hcCCCCccEEeeC
Q 030299 114 HFDGCKADLVVCD 126 (179)
Q Consensus 114 ~~~~~~~D~VlsD 126 (179)
...+.++|+|+-.
T Consensus 252 ~~~g~g~D~vid~ 264 (363)
T 3uog_A 252 LTGDRGADHILEI 264 (363)
T ss_dssp HHTTCCEEEEEEE
T ss_pred HhCCCCceEEEEC
Confidence 5556689998854
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=81.70 E-value=11 Score=30.67 Aligned_cols=80 Identities=13% Similarity=0.064 Sum_probs=52.1
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CC--CCeeEEeccccchhhH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PI--EGVIQVQGDITNARTA 108 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~--~~v~~i~gDi~~~~~~ 108 (179)
.+.+||=-|++.| ....+++++.. .+..|+.++.++.. .. ..+.++++|+++.+..
T Consensus 7 ~~k~vlVTGas~g-IG~~la~~l~~-----------~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v 74 (319)
T 3ioy_A 7 AGRTAFVTGGANG-VGIGLVRQLLN-----------QGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGF 74 (319)
T ss_dssp TTCEEEEETTTST-HHHHHHHHHHH-----------TTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHH
T ss_pred CCCEEEEcCCchH-HHHHHHHHHHH-----------CCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHH
Confidence 3567888888755 45555554421 14789999988631 01 2688899999998765
Q ss_pred HHHHhhcC--CCCccEEeeCCCCCCC
Q 030299 109 EVVIRHFD--GCKADLVVCDGAPDVT 132 (179)
Q Consensus 109 ~~l~~~~~--~~~~D~VlsD~~~~~~ 132 (179)
+++.+... -+.+|+|+++.+....
T Consensus 75 ~~~~~~~~~~~g~id~lv~nAg~~~~ 100 (319)
T 3ioy_A 75 KMAADEVEARFGPVSILCNNAGVNLF 100 (319)
T ss_dssp HHHHHHHHHHTCCEEEEEECCCCCCC
T ss_pred HHHHHHHHHhCCCCCEEEECCCcCCC
Confidence 55554321 1368999999875443
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=81.68 E-value=5.4 Score=31.73 Aligned_cols=80 Identities=9% Similarity=-0.022 Sum_probs=50.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~ 109 (179)
..+++||=-|++.| .-..+++++.. .+..|+.+|.++.. ....+.++++|+++.+..+
T Consensus 22 ~~~k~~lVTGas~G-IG~aia~~la~-----------~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~ 89 (279)
T 3sju_A 22 SRPQTAFVTGVSSG-IGLAVARTLAA-----------RGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVH 89 (279)
T ss_dssp ---CEEEEESTTSH-HHHHHHHHHHH-----------TTCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHH
T ss_pred cCCCEEEEeCCCCH-HHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHH
Confidence 35678888887655 44444444421 14789999987631 1246888999999987655
Q ss_pred HHHhhcC--CCCccEEeeCCCCCC
Q 030299 110 VVIRHFD--GCKADLVVCDGAPDV 131 (179)
Q Consensus 110 ~l~~~~~--~~~~D~VlsD~~~~~ 131 (179)
++.+... -+++|+|+++.+...
T Consensus 90 ~~~~~~~~~~g~id~lv~nAg~~~ 113 (279)
T 3sju_A 90 AAVAAAVERFGPIGILVNSAGRNG 113 (279)
T ss_dssp HHHHHHHHHHCSCCEEEECCCCCC
T ss_pred HHHHHHHHHcCCCcEEEECCCCCC
Confidence 5444321 136899999887543
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=81.60 E-value=7.3 Score=31.96 Aligned_cols=72 Identities=18% Similarity=-0.001 Sum_probs=48.9
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-------CC--------C-CeeEEeccccchh
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------PI--------E-GVIQVQGDITNAR 106 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-------~~--------~-~v~~i~gDi~~~~ 106 (179)
++||=.|| +|+....+++++-. .+..|++++.++.. .+ + ++.++.+|+++.+
T Consensus 29 k~vlVtGa-tG~IG~~l~~~L~~-----------~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~ 96 (381)
T 1n7h_A 29 KIALITGI-TGQDGSYLTEFLLG-----------KGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDAS 96 (381)
T ss_dssp CEEEEETT-TSHHHHHHHHHHHH-----------TTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHH
T ss_pred CeEEEEcC-CchHHHHHHHHHHH-----------CCCEEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHH
Confidence 47887775 57777766665532 14689999876532 11 2 7889999999987
Q ss_pred hHHHHHhhcCCCCccEEeeCCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
...++.+.. .+|+|++.++.
T Consensus 97 ~~~~~~~~~---~~d~Vih~A~~ 116 (381)
T 1n7h_A 97 SLRRWIDVI---KPDEVYNLAAQ 116 (381)
T ss_dssp HHHHHHHHH---CCSEEEECCSC
T ss_pred HHHHHHHhc---CCCEEEECCcc
Confidence 666555432 58999998764
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=81.58 E-value=6.1 Score=31.65 Aligned_cols=71 Identities=14% Similarity=0.066 Sum_probs=48.0
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHHHHHh
Q 030299 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 44 ~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
+||=.| |+|+.-..+++++.. .+..|+++|..... ...++.++++|+++.+..+++.+
T Consensus 3 ~vlVTG-atG~iG~~l~~~L~~-----------~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~ 70 (347)
T 1orr_A 3 KLLITG-GCGFLGSNLASFALS-----------QGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLIT 70 (347)
T ss_dssp EEEEET-TTSHHHHHHHHHHHH-----------TTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHH
T ss_pred EEEEeC-CCchhHHHHHHHHHh-----------CCCEEEEEeCCCccCchhhhhhhccCCceEEEEcCCCCHHHHHHHHh
Confidence 466556 467777777666532 14689999864311 12358899999999877666654
Q ss_pred hcCCCCccEEeeCCCC
Q 030299 114 HFDGCKADLVVCDGAP 129 (179)
Q Consensus 114 ~~~~~~~D~VlsD~~~ 129 (179)
. ..+|+|++.++.
T Consensus 71 ~---~~~d~vih~A~~ 83 (347)
T 1orr_A 71 K---YMPDSCFHLAGQ 83 (347)
T ss_dssp H---HCCSEEEECCCC
T ss_pred c---cCCCEEEECCcc
Confidence 3 258999998864
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=81.48 E-value=7.1 Score=30.13 Aligned_cols=78 Identities=12% Similarity=0.048 Sum_probs=50.9
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC-----------CCCeeEEeccccchhhHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------IEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~-----------~~~v~~i~gDi~~~~~~~~ 110 (179)
+++||=.|++ |+.-..+++++.. .+..|+.++.++... ..++.++++|+++.+..++
T Consensus 14 ~k~vlITGas-ggiG~~~a~~l~~-----------~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~ 81 (265)
T 1h5q_A 14 NKTIIVTGGN-RGIGLAFTRAVAA-----------AGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTK 81 (265)
T ss_dssp TEEEEEETTT-SHHHHHHHHHHHH-----------TTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCC-chHHHHHHHHHHH-----------CCCeEEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCCHHHHHH
Confidence 5577877865 6666666665532 146899999755321 2368889999999876555
Q ss_pred HHhhcC--CCCccEEeeCCCCCC
Q 030299 111 VIRHFD--GCKADLVVCDGAPDV 131 (179)
Q Consensus 111 l~~~~~--~~~~D~VlsD~~~~~ 131 (179)
+.+... -+.+|+|++..+...
T Consensus 82 ~~~~~~~~~~~id~li~~Ag~~~ 104 (265)
T 1h5q_A 82 TIQQIDADLGPISGLIANAGVSV 104 (265)
T ss_dssp HHHHHHHHSCSEEEEEECCCCCC
T ss_pred HHHHHHHhcCCCCEEEECCCcCC
Confidence 544321 136999999886543
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=81.47 E-value=4.4 Score=31.29 Aligned_cols=78 Identities=15% Similarity=0.098 Sum_probs=51.1
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~~ 110 (179)
.+++||=.|++ |+.-..+++++.. .+.+|+.+|.++.. ...++.++++|+++.+..++
T Consensus 12 ~~k~vlItGas-ggiG~~la~~l~~-----------~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~ 79 (260)
T 3awd_A 12 DNRVAIVTGGA-QNIGLACVTALAE-----------AGARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQN 79 (260)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHH-----------TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHH
Confidence 45678877765 5666666655532 14689999987521 12368889999999876555
Q ss_pred HHhhcC--CCCccEEeeCCCCC
Q 030299 111 VIRHFD--GCKADLVVCDGAPD 130 (179)
Q Consensus 111 l~~~~~--~~~~D~VlsD~~~~ 130 (179)
+.+... -+++|+|++..+..
T Consensus 80 ~~~~~~~~~~~id~vi~~Ag~~ 101 (260)
T 3awd_A 80 AVRSVHEQEGRVDILVACAGIC 101 (260)
T ss_dssp HHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHcCCCCEEEECCCCC
Confidence 544221 13689999988643
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=81.40 E-value=6.8 Score=30.40 Aligned_cols=79 Identities=16% Similarity=0.133 Sum_probs=50.4
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------CCCCeeEEeccccchhhHHHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIEGVIQVQGDITNARTAEVVI 112 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------~~~~v~~i~gDi~~~~~~~~l~ 112 (179)
.+++||=.|++ ||.-..+++++.. .+..|+.+|.++.. ...++.++++|+++.+..+++.
T Consensus 6 ~~k~vlVTGas-~gIG~~ia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 73 (249)
T 2ew8_A 6 KDKLAVITGGA-NGIGRAIAERFAV-----------EGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFG 73 (249)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHH-----------TTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHH-----------CCCEEEEEcCCchhHHHHHHHhcCCcEEEEEeecCCHHHHHHHH
Confidence 35678877866 4555555554431 14689999987621 1235788999999987655554
Q ss_pred hhcC--CCCccEEeeCCCCCC
Q 030299 113 RHFD--GCKADLVVCDGAPDV 131 (179)
Q Consensus 113 ~~~~--~~~~D~VlsD~~~~~ 131 (179)
+... -+++|+|+++.+...
T Consensus 74 ~~~~~~~g~id~lv~nAg~~~ 94 (249)
T 2ew8_A 74 KQVISTFGRCDILVNNAGIYP 94 (249)
T ss_dssp HHHHHHHSCCCEEEECCCCCC
T ss_pred HHHHHHcCCCCEEEECCCCCC
Confidence 3221 136999999887543
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=81.30 E-value=6.5 Score=32.16 Aligned_cols=72 Identities=15% Similarity=0.031 Sum_probs=48.1
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------------CCCCeeEEeccccchh
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------------PIEGVIQVQGDITNAR 106 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------------~~~~v~~i~gDi~~~~ 106 (179)
++||=.|+ +|+.-..+++++-. .+..|++++..+.. ...++.++++|+++.+
T Consensus 25 ~~vlVtGa-tG~iG~~l~~~L~~-----------~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~ 92 (375)
T 1t2a_A 25 NVALITGI-TGQDGSYLAEFLLE-----------KGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDST 92 (375)
T ss_dssp CEEEEETT-TSHHHHHHHHHHHH-----------TTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHH
T ss_pred cEEEEECC-CchHHHHHHHHHHH-----------CCCEEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHH
Confidence 46777775 56676666665531 14689999877532 1246889999999987
Q ss_pred hHHHHHhhcCCCCccEEeeCCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
...++.+.. .+|+|++.++.
T Consensus 93 ~~~~~~~~~---~~d~vih~A~~ 112 (375)
T 1t2a_A 93 CLVKIINEV---KPTEIYNLGAQ 112 (375)
T ss_dssp HHHHHHHHH---CCSEEEECCSC
T ss_pred HHHHHHHhc---CCCEEEECCCc
Confidence 666655432 58999998764
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=81.26 E-value=1.2 Score=36.72 Aligned_cols=73 Identities=15% Similarity=0.081 Sum_probs=44.3
Q ss_pred CCCCCCEEEEEccCC-ChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCeeEEeccccchhhHHHHH
Q 030299 38 IFEGVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVI 112 (179)
Q Consensus 38 ll~~g~~VlDLgagp-Gg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~----~~~v~~i~gDi~~~~~~~~l~ 112 (179)
.+++|++||=+|||+ |..+..+++..+ ..+|+++|.++.+. --|+..+. |..+ +..+++.
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g-------------~~~Vi~~~~~~~~~~~~~~lGa~~~i-~~~~-~~~~~v~ 232 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVS-------------AARVIAVDLDDDRLALAREVGADAAV-KSGA-GAADAIR 232 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHC-------------CCEEEEEESCHHHHHHHHHTTCSEEE-ECST-THHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-------------CCEEEEEcCCHHHHHHHHHcCCCEEE-cCCC-cHHHHHH
Confidence 357899999999876 566666777664 37999999987420 11332211 1111 3334455
Q ss_pred hhcCCCCccEEee
Q 030299 113 RHFDGCKADLVVC 125 (179)
Q Consensus 113 ~~~~~~~~D~Vls 125 (179)
+...+.++|+|+-
T Consensus 233 ~~t~g~g~d~v~d 245 (345)
T 3jv7_A 233 ELTGGQGATAVFD 245 (345)
T ss_dssp HHHGGGCEEEEEE
T ss_pred HHhCCCCCeEEEE
Confidence 4444557888875
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=81.24 E-value=5.5 Score=31.33 Aligned_cols=79 Identities=11% Similarity=0.000 Sum_probs=50.8
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~~ 109 (179)
.+++||=-|++ ||.-..+++++.. .+.+|+.+|.++.. ....+.++++|+++.+..+
T Consensus 9 ~~k~vlVTGas-~gIG~aia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~ 76 (262)
T 3pk0_A 9 QGRSVVVTGGT-KGIGRGIATVFAR-----------AGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCD 76 (262)
T ss_dssp TTCEEEETTCS-SHHHHHHHHHHHH-----------TTCEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHH
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHH
Confidence 46677777766 4555555554432 14689999987631 1146889999999987655
Q ss_pred HHHhhcC--CCCccEEeeCCCCCC
Q 030299 110 VVIRHFD--GCKADLVVCDGAPDV 131 (179)
Q Consensus 110 ~l~~~~~--~~~~D~VlsD~~~~~ 131 (179)
++.+... -+++|+++++.+...
T Consensus 77 ~~~~~~~~~~g~id~lvnnAg~~~ 100 (262)
T 3pk0_A 77 ALAGRAVEEFGGIDVVCANAGVFP 100 (262)
T ss_dssp HHHHHHHHHHSCCSEEEECCCCCC
T ss_pred HHHHHHHHHhCCCCEEEECCCCCC
Confidence 5544321 136999999886543
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... | Back alignment and structure |
|---|
Probab=81.09 E-value=7.7 Score=31.78 Aligned_cols=78 Identities=12% Similarity=0.138 Sum_probs=49.6
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC--CCC--------------CCCeeEEeccccch
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP--MAP--------------IEGVIQVQGDITNA 105 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~--~~~--------------~~~v~~i~gDi~~~ 105 (179)
+.+||=.||+ ||.-..+++++.. ....|+.++.+. ... ..++.++++|+++.
T Consensus 2 ~k~vlVTGas-~GIG~ala~~L~~-----------~G~~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~ 69 (327)
T 1jtv_A 2 RTVVLITGCS-SGIGLHLAVRLAS-----------DPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDS 69 (327)
T ss_dssp CEEEEESCCS-SHHHHHHHHHHHT-----------CTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCH
T ss_pred CCEEEEECCC-CHHHHHHHHHHHH-----------CCCceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCH
Confidence 3456666766 5566666666542 133455544332 110 14688899999999
Q ss_pred hhHHHHHhhcCCCCccEEeeCCCCCC
Q 030299 106 RTAEVVIRHFDGCKADLVVCDGAPDV 131 (179)
Q Consensus 106 ~~~~~l~~~~~~~~~D~VlsD~~~~~ 131 (179)
+..+++.+....+.+|+|+++.....
T Consensus 70 ~~v~~~~~~~~~g~iD~lVnnAG~~~ 95 (327)
T 1jtv_A 70 KSVAAARERVTEGRVDVLVCNAGLGL 95 (327)
T ss_dssp HHHHHHHHTCTTSCCSEEEECCCCCC
T ss_pred HHHHHHHHHHhcCCCCEEEECCCcCC
Confidence 88777777655567999999986543
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=81.05 E-value=1.9 Score=33.48 Aligned_cols=77 Identities=18% Similarity=0.113 Sum_probs=50.5
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~~ 110 (179)
.+++||=.|++ ||.-..+++++.. .+..|+.+|.++.. ....+.++++|+++.+..++
T Consensus 8 ~~k~vlITGas-~giG~~~a~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 75 (253)
T 3qiv_A 8 ENKVGIVTGSG-GGIGQAYAEALAR-----------EGAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKA 75 (253)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHH-----------TTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHH
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHH-----------CCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHH
Confidence 46678877865 5555555555432 14789999987631 12467889999999876555
Q ss_pred HHhhcC--CCCccEEeeCCCC
Q 030299 111 VIRHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 111 l~~~~~--~~~~D~VlsD~~~ 129 (179)
+.+... -+++|+|+++.+.
T Consensus 76 ~~~~~~~~~g~id~li~~Ag~ 96 (253)
T 3qiv_A 76 MADRTLAEFGGIDYLVNNAAI 96 (253)
T ss_dssp HHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHcCCCCEEEECCCc
Confidence 554321 1369999998764
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=81.01 E-value=5.3 Score=31.49 Aligned_cols=79 Identities=10% Similarity=-0.046 Sum_probs=51.6
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~~ 110 (179)
.+.+||=.|++ |+.-..+++++.. .+..|+++|.++.. ...++.++++|+++.+..++
T Consensus 30 ~~k~vlITGas-ggIG~~la~~L~~-----------~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~ 97 (272)
T 1yb1_A 30 TGEIVLITGAG-HGIGRLTAYEFAK-----------LKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYS 97 (272)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHH-----------TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred CCCEEEEECCC-chHHHHHHHHHHH-----------CCCEEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHH
Confidence 35678877765 5566666555432 14689999987621 02368889999999876555
Q ss_pred HHhhcC--CCCccEEeeCCCCCC
Q 030299 111 VIRHFD--GCKADLVVCDGAPDV 131 (179)
Q Consensus 111 l~~~~~--~~~~D~VlsD~~~~~ 131 (179)
+.+... -+.+|+|++..+...
T Consensus 98 ~~~~~~~~~g~iD~li~~Ag~~~ 120 (272)
T 1yb1_A 98 SAKKVKAEIGDVSILVNNAGVVY 120 (272)
T ss_dssp HHHHHHHHTCCCSEEEECCCCCC
T ss_pred HHHHHHHHCCCCcEEEECCCcCC
Confidence 544321 136999999887543
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=80.97 E-value=5.2 Score=31.84 Aligned_cols=77 Identities=14% Similarity=0.090 Sum_probs=50.6
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------------CCCCeeEEeccccchh
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------PIEGVIQVQGDITNAR 106 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------------~~~~v~~i~gDi~~~~ 106 (179)
+.+||=.|++ |+.-..+++++.. .+..|+.+|.++.. ...++.++++|+++.+
T Consensus 18 ~k~vlVTGas-ggIG~~la~~l~~-----------~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~ 85 (303)
T 1yxm_A 18 GQVAIVTGGA-TGIGKAIVKELLE-----------LGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEE 85 (303)
T ss_dssp TCEEEEETTT-SHHHHHHHHHHHH-----------TTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHH
T ss_pred CCEEEEECCC-cHHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHH
Confidence 5688888865 6666666655432 14689999877521 1246889999999987
Q ss_pred hHHHHHhhcC--CCCccEEeeCCCCC
Q 030299 107 TAEVVIRHFD--GCKADLVVCDGAPD 130 (179)
Q Consensus 107 ~~~~l~~~~~--~~~~D~VlsD~~~~ 130 (179)
..+++.+... -+++|+|++..+..
T Consensus 86 ~v~~~~~~~~~~~g~id~li~~Ag~~ 111 (303)
T 1yxm_A 86 EVNNLVKSTLDTFGKINFLVNNGGGQ 111 (303)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 6555544321 13699999988743
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=80.97 E-value=10 Score=31.08 Aligned_cols=75 Identities=20% Similarity=0.026 Sum_probs=49.7
Q ss_pred CCEEEEEccCCChHHHHHHHHhC-CCCCCCCCCCCCCCCeEEEEeCCCCCC------------------------CCC--
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLY-LPAKLSPDSREGDLPLIVAIDLQPMAP------------------------IEG-- 94 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~-~~~~~~~~~~~~~~~~VvavD~~~~~~------------------------~~~-- 94 (179)
+++||=.|+ +|+.-..+++++- . .+..|+++|..+... ..+
T Consensus 2 ~m~vlVTGa-tG~iG~~l~~~L~~~-----------~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (397)
T 1gy8_A 2 HMRVLVCGG-AGYIGSHFVRALLRD-----------TNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADR 69 (397)
T ss_dssp CCEEEEETT-TSHHHHHHHHHHHHH-----------CCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTC
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHh-----------CCCEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCc
Confidence 356776664 5767666665542 2 146899998764321 125
Q ss_pred -eeEEeccccchhhHHHHHhhcCCCCccEEeeCCCCC
Q 030299 95 -VIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPD 130 (179)
Q Consensus 95 -v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~ 130 (179)
+.++.+|+++.+...++.+.+ +.+|+|++.+++.
T Consensus 70 ~~~~~~~Dl~d~~~~~~~~~~~--~~~d~vih~A~~~ 104 (397)
T 1gy8_A 70 YAALEVGDVRNEDFLNGVFTRH--GPIDAVVHMCAFL 104 (397)
T ss_dssp CCEEEESCTTCHHHHHHHHHHS--CCCCEEEECCCCC
T ss_pred eEEEEECCCCCHHHHHHHHHhc--CCCCEEEECCCcc
Confidence 889999999988766665532 2499999988753
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=80.96 E-value=6.8 Score=30.01 Aligned_cols=77 Identities=13% Similarity=0.154 Sum_probs=49.3
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------C--CCCeeEEeccccchhhHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P--IEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~--~~~v~~i~gDi~~~~~~~~ 110 (179)
+++||=.|++ |+.-..+++++.. .+..|+.+|.++.. . ..++.++++|+++.+..++
T Consensus 2 ~k~vlItGas-ggiG~~~a~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 69 (250)
T 2cfc_A 2 SRVAIVTGAS-SGNGLAIATRFLA-----------RGDRVAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNA 69 (250)
T ss_dssp CCEEEEETTT-SHHHHHHHHHHHH-----------TTCEEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCC-chHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHH
Confidence 4567777765 6666666655532 14689999977521 1 1357889999999876555
Q ss_pred HHhhcC--CCCccEEeeCCCCC
Q 030299 111 VIRHFD--GCKADLVVCDGAPD 130 (179)
Q Consensus 111 l~~~~~--~~~~D~VlsD~~~~ 130 (179)
+.+... -+++|+|++..+..
T Consensus 70 ~~~~~~~~~~~id~li~~Ag~~ 91 (250)
T 2cfc_A 70 AIAATMEQFGAIDVLVNNAGIT 91 (250)
T ss_dssp HHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHhCCCCEEEECCCCC
Confidence 544221 13689999988654
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=80.93 E-value=8.2 Score=30.67 Aligned_cols=79 Identities=10% Similarity=0.144 Sum_probs=52.0
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~~ 110 (179)
.|++||=-|++ ||.-..+++++.. .+..|+.+|.++.. ....+.++++|+++.+..++
T Consensus 32 ~gk~~lVTGas-~GIG~aia~~la~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~ 99 (275)
T 4imr_A 32 RGRTALVTGSS-RGIGAAIAEGLAG-----------AGAHVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTD 99 (275)
T ss_dssp TTCEEEETTCS-SHHHHHHHHHHHH-----------TTCEEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHH
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHH-----------CCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHH
Confidence 46678877766 4555555554431 14789999987742 12468889999999876555
Q ss_pred HHhhcC-CCCccEEeeCCCCCC
Q 030299 111 VIRHFD-GCKADLVVCDGAPDV 131 (179)
Q Consensus 111 l~~~~~-~~~~D~VlsD~~~~~ 131 (179)
+.+... .+++|+++++.+...
T Consensus 100 ~~~~~~~~g~iD~lvnnAg~~~ 121 (275)
T 4imr_A 100 LIERAEAIAPVDILVINASAQI 121 (275)
T ss_dssp HHHHHHHHSCCCEEEECCCCCC
T ss_pred HHHHHHHhCCCCEEEECCCCCC
Confidence 554321 147999999887533
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=80.93 E-value=8.2 Score=30.29 Aligned_cols=79 Identities=10% Similarity=0.036 Sum_probs=50.9
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~~ 109 (179)
.+++||=.|++ ||.-..+++++.. .+..|+.++..... .-.++.++++|+++.+..+
T Consensus 24 ~~k~vlITGas-~gIG~~~a~~l~~-----------~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~ 91 (269)
T 3gk3_A 24 AKRVAFVTGGM-GGLGAAISRRLHD-----------AGMAVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFESCE 91 (269)
T ss_dssp CCCEEEETTTT-SHHHHHHHHHHHT-----------TTCEEEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTCHHHHH
T ss_pred cCCEEEEECCC-chHHHHHHHHHHH-----------CCCEEEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHH
Confidence 45677766765 5666666665542 25688888855421 1246889999999987655
Q ss_pred HHHhhcCC--CCccEEeeCCCCCC
Q 030299 110 VVIRHFDG--CKADLVVCDGAPDV 131 (179)
Q Consensus 110 ~l~~~~~~--~~~D~VlsD~~~~~ 131 (179)
++.+...+ +++|+|+++.+...
T Consensus 92 ~~~~~~~~~~g~id~li~nAg~~~ 115 (269)
T 3gk3_A 92 RCAEKVLADFGKVDVLINNAGITR 115 (269)
T ss_dssp HHHHHHHHHHSCCSEEEECCCCCC
T ss_pred HHHHHHHHHcCCCCEEEECCCcCC
Confidence 55543211 36899999887543
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=80.88 E-value=3.7 Score=31.42 Aligned_cols=78 Identities=17% Similarity=0.032 Sum_probs=49.1
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~~~ 110 (179)
+++||=.|++ ||.-..+++++.. .+..|+.++.++.. ....+.++++|+++.+..++
T Consensus 2 ~k~vlITGas-~gIG~~ia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~ 69 (235)
T 3l77_A 2 MKVAVITGAS-RGIGEAIARALAR-----------DGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEE 69 (235)
T ss_dssp CCEEEEESCS-SHHHHHHHHHHHH-----------TTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCC-cHHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHH
Confidence 4567777765 5555555555432 14689998887521 12468889999999876555
Q ss_pred HHhhcC--CCCccEEeeCCCCCC
Q 030299 111 VIRHFD--GCKADLVVCDGAPDV 131 (179)
Q Consensus 111 l~~~~~--~~~~D~VlsD~~~~~ 131 (179)
+.+... -+++|+++++.+...
T Consensus 70 ~~~~~~~~~g~id~li~~Ag~~~ 92 (235)
T 3l77_A 70 FSKKVLERFGDVDVVVANAGLGY 92 (235)
T ss_dssp HCC-HHHHHSSCSEEEECCCCCC
T ss_pred HHHHHHHhcCCCCEEEECCcccc
Confidence 443221 136999999887543
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=80.88 E-value=2.2 Score=33.78 Aligned_cols=78 Identities=15% Similarity=0.080 Sum_probs=50.8
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccch-hhH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNA-RTA 108 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~-~~~ 108 (179)
.+.+||=-|++ ||.-..+++++.. .+..|+.++.++.. ...++.++++|+++. +..
T Consensus 11 ~~k~vlITGas-~GIG~~~a~~L~~-----------~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v 78 (311)
T 3o26_A 11 KRRCAVVTGGN-KGIGFEICKQLSS-----------NGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATM 78 (311)
T ss_dssp -CCEEEESSCS-SHHHHHHHHHHHH-----------TTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHH
T ss_pred CCcEEEEecCC-chHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHH
Confidence 46678877776 5555555555432 15789999987621 124688999999997 655
Q ss_pred HHHHhhcCC--CCccEEeeCCCCC
Q 030299 109 EVVIRHFDG--CKADLVVCDGAPD 130 (179)
Q Consensus 109 ~~l~~~~~~--~~~D~VlsD~~~~ 130 (179)
+++.+.+.. +.+|+|+++.+..
T Consensus 79 ~~~~~~~~~~~g~iD~lv~nAg~~ 102 (311)
T 3o26_A 79 SSLADFIKTHFGKLDILVNNAGVA 102 (311)
T ss_dssp HHHHHHHHHHHSSCCEEEECCCCC
T ss_pred HHHHHHHHHhCCCCCEEEECCccc
Confidence 555543321 3799999998754
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=80.58 E-value=4.3 Score=32.46 Aligned_cols=72 Identities=18% Similarity=0.142 Sum_probs=49.0
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---CC-CCeeEEeccccchhhHHHHHhhcCCCC
Q 030299 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---PI-EGVIQVQGDITNARTAEVVIRHFDGCK 119 (179)
Q Consensus 44 ~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---~~-~~v~~i~gDi~~~~~~~~l~~~~~~~~ 119 (179)
+||=.| |+|.....+++++.. .+..|+++|..+.. .+ .+++++++|+++.+...++.+. .+
T Consensus 3 ~ilVtG-atG~iG~~l~~~L~~-----------~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~---~~ 67 (330)
T 2c20_A 3 SILICG-GAGYIGSHAVKKLVD-----------EGLSVVVVDNLQTGHEDAITEGAKFYNGDLRDKAFLRDVFTQ---EN 67 (330)
T ss_dssp EEEEET-TTSHHHHHHHHHHHH-----------TTCEEEEEECCSSCCGGGSCTTSEEEECCTTCHHHHHHHHHH---SC
T ss_pred EEEEEC-CCcHHHHHHHHHHHh-----------CCCEEEEEeCCCcCchhhcCCCcEEEECCCCCHHHHHHHHhh---cC
Confidence 456555 467777777666532 14689999876532 12 2788999999998776666543 36
Q ss_pred ccEEeeCCCCC
Q 030299 120 ADLVVCDGAPD 130 (179)
Q Consensus 120 ~D~VlsD~~~~ 130 (179)
+|+|++..+..
T Consensus 68 ~d~vih~a~~~ 78 (330)
T 2c20_A 68 IEAVMHFAADS 78 (330)
T ss_dssp EEEEEECCCCC
T ss_pred CCEEEECCccc
Confidence 99999987653
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=80.54 E-value=5 Score=31.37 Aligned_cols=78 Identities=15% Similarity=0.099 Sum_probs=50.2
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--C---------CCCeeEEeccccchhhHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--P---------IEGVIQVQGDITNARTAE 109 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--~---------~~~v~~i~gDi~~~~~~~ 109 (179)
++++||=.|++ ||.-..+++++.. .+.+|+.+|.++.. . -.++.++++|+++.+..+
T Consensus 6 ~~k~vlVTGas-~gIG~~ia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~ 73 (263)
T 3ai3_A 6 SGKVAVITGSS-SGIGLAIAEGFAK-----------EGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVD 73 (263)
T ss_dssp TTCEEEEESCS-SHHHHHHHHHHHH-----------TTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHH
T ss_pred CCCEEEEECCC-chHHHHHHHHHHH-----------CCCEEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHH
Confidence 35678877766 5555555555432 14689999987521 0 235788999999987655
Q ss_pred HHHhhcC--CCCccEEeeCCCCC
Q 030299 110 VVIRHFD--GCKADLVVCDGAPD 130 (179)
Q Consensus 110 ~l~~~~~--~~~~D~VlsD~~~~ 130 (179)
++.+... -+++|+|+++.+..
T Consensus 74 ~~~~~~~~~~g~id~lv~~Ag~~ 96 (263)
T 3ai3_A 74 AVVESVRSSFGGADILVNNAGTG 96 (263)
T ss_dssp HHHHHHHHHHSSCSEEEECCCCC
T ss_pred HHHHHHHHHcCCCCEEEECCCCC
Confidence 5544221 13689999988654
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=80.50 E-value=2.3 Score=35.95 Aligned_cols=73 Identities=19% Similarity=0.135 Sum_probs=44.8
Q ss_pred CCCCCEEEEEccCC-ChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCeeEEeccccchhhHHHHHh
Q 030299 39 FEGVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 39 l~~g~~VlDLgagp-Gg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~----~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
+++|++||=+|||+ |..+..+++..+ ..+|+++|.++.+. --|+..+ -|..+.+..+++.+
T Consensus 211 ~~~g~~VlV~GaG~vG~~aiqlak~~G-------------a~~Vi~~~~~~~~~~~~~~lGa~~v-i~~~~~~~~~~i~~ 276 (404)
T 3ip1_A 211 IRPGDNVVILGGGPIGLAAVAILKHAG-------------ASKVILSEPSEVRRNLAKELGADHV-IDPTKENFVEAVLD 276 (404)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-------------CSEEEEECSCHHHHHHHHHHTCSEE-ECTTTSCHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-------------CCEEEEECCCHHHHHHHHHcCCCEE-EcCCCCCHHHHHHH
Confidence 57899999999865 444555566554 23899999887321 0133221 23333344555666
Q ss_pred hcCCCCccEEee
Q 030299 114 HFDGCKADLVVC 125 (179)
Q Consensus 114 ~~~~~~~D~Vls 125 (179)
...+.++|+|+-
T Consensus 277 ~t~g~g~D~vid 288 (404)
T 3ip1_A 277 YTNGLGAKLFLE 288 (404)
T ss_dssp HTTTCCCSEEEE
T ss_pred HhCCCCCCEEEE
Confidence 556668999985
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=80.40 E-value=7.5 Score=31.35 Aligned_cols=79 Identities=11% Similarity=0.044 Sum_probs=50.8
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------C--CCCeeEEeccccchhhHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P--IEGVIQVQGDITNARTAE 109 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~--~~~v~~i~gDi~~~~~~~ 109 (179)
.+++||=-|++. |.-..+++++.. .+..|+.+|.++.. . ...+.++++|+++.+..+
T Consensus 40 ~~k~vlVTGas~-GIG~aia~~la~-----------~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~ 107 (293)
T 3rih_A 40 SARSVLVTGGTK-GIGRGIATVFAR-----------AGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCA 107 (293)
T ss_dssp TTCEEEETTTTS-HHHHHHHHHHHH-----------TTCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHH
T ss_pred CCCEEEEeCCCc-HHHHHHHHHHHH-----------CCCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHH
Confidence 466788777664 455555554421 14689999987632 1 146888999999987655
Q ss_pred HHHhhcC--CCCccEEeeCCCCCC
Q 030299 110 VVIRHFD--GCKADLVVCDGAPDV 131 (179)
Q Consensus 110 ~l~~~~~--~~~~D~VlsD~~~~~ 131 (179)
++.+... -+.+|+|+++.+...
T Consensus 108 ~~~~~~~~~~g~iD~lvnnAg~~~ 131 (293)
T 3rih_A 108 DAARTVVDAFGALDVVCANAGIFP 131 (293)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCC
T ss_pred HHHHHHHHHcCCCCEEEECCCCCC
Confidence 5544321 136899999886543
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=80.39 E-value=3.7 Score=33.67 Aligned_cols=73 Identities=19% Similarity=0.124 Sum_probs=46.0
Q ss_pred CCCCCEEEEEccC--CChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCeeEEeccccchhhHHHHH
Q 030299 39 FEGVKRVVDLCAA--PGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVI 112 (179)
Q Consensus 39 l~~g~~VlDLgag--pGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~----~~~v~~i~gDi~~~~~~~~l~ 112 (179)
+++|++||-.||| -|..+..++...+ .+|+++|.++.+. --|...+ .|..+.+..+++.
T Consensus 142 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~G--------------a~Vi~~~~~~~~~~~~~~lga~~~-~~~~~~~~~~~~~ 206 (340)
T 3gms_A 142 LQRNDVLLVNACGSAIGHLFAQLSQILN--------------FRLIAVTRNNKHTEELLRLGAAYV-IDTSTAPLYETVM 206 (340)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHHT--------------CEEEEEESSSTTHHHHHHHTCSEE-EETTTSCHHHHHH
T ss_pred cCCCCEEEEeCCccHHHHHHHHHHHHcC--------------CEEEEEeCCHHHHHHHHhCCCcEE-EeCCcccHHHHHH
Confidence 4789999999987 3555556666654 6899999887531 0122211 2344444455566
Q ss_pred hhcCCCCccEEeeC
Q 030299 113 RHFDGCKADLVVCD 126 (179)
Q Consensus 113 ~~~~~~~~D~VlsD 126 (179)
+...+.++|+|+..
T Consensus 207 ~~~~~~g~Dvvid~ 220 (340)
T 3gms_A 207 ELTNGIGADAAIDS 220 (340)
T ss_dssp HHTTTSCEEEEEES
T ss_pred HHhCCCCCcEEEEC
Confidence 55555679998754
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=80.39 E-value=4.6 Score=31.82 Aligned_cols=77 Identities=12% Similarity=0.096 Sum_probs=50.3
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-------CCCCeeEEeccccchhhHHHHHhh
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------PIEGVIQVQGDITNARTAEVVIRH 114 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-------~~~~v~~i~gDi~~~~~~~~l~~~ 114 (179)
+++||=.|++ |+.-..+++++.. .+..|+++|.++.. ...++.++++|+++.+..+++.+.
T Consensus 5 ~k~vlVTGas-~gIG~~~a~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~ 72 (281)
T 3m1a_A 5 AKVWLVTGAS-SGFGRAIAEAAVA-----------AGDTVIGTARRTEALDDLVAAYPDRAEAISLDVTDGERIDVVAAD 72 (281)
T ss_dssp CCEEEETTTT-SHHHHHHHHHHHH-----------TTCEEEEEESSGGGGHHHHHHCTTTEEEEECCTTCHHHHHHHHHH
T ss_pred CcEEEEECCC-ChHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHhccCCceEEEeeCCCHHHHHHHHHH
Confidence 4566666655 5666666655432 14789999987632 124788999999998765555443
Q ss_pred cC--CCCccEEeeCCCCC
Q 030299 115 FD--GCKADLVVCDGAPD 130 (179)
Q Consensus 115 ~~--~~~~D~VlsD~~~~ 130 (179)
.. .+++|+|++..+..
T Consensus 73 ~~~~~g~id~lv~~Ag~~ 90 (281)
T 3m1a_A 73 VLARYGRVDVLVNNAGRT 90 (281)
T ss_dssp HHHHHSCCSEEEECCCCE
T ss_pred HHHhCCCCCEEEECCCcC
Confidence 21 13689999988754
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=80.32 E-value=5.2 Score=30.72 Aligned_cols=79 Identities=14% Similarity=0.024 Sum_probs=51.8
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~~ 110 (179)
.+++||=.|+ .|+.-..+++++.. .+..|+++|.++.. ...++.++.+|+++.+..++
T Consensus 10 ~~~~vlVtGa-sggiG~~la~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 77 (255)
T 1fmc_A 10 DGKCAIITGA-GAGIGKEIAITFAT-----------AGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSA 77 (255)
T ss_dssp TTCEEEETTT-TSHHHHHHHHHHHT-----------TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred CCCEEEEECC-ccHHHHHHHHHHHH-----------CCCEEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHH
Confidence 3567777675 56677766666542 25689999987521 12468888999999876555
Q ss_pred HHhhcC--CCCccEEeeCCCCCC
Q 030299 111 VIRHFD--GCKADLVVCDGAPDV 131 (179)
Q Consensus 111 l~~~~~--~~~~D~VlsD~~~~~ 131 (179)
+.+... -+++|+|++..+...
T Consensus 78 ~~~~~~~~~~~~d~vi~~Ag~~~ 100 (255)
T 1fmc_A 78 LADFAISKLGKVDILVNNAGGGG 100 (255)
T ss_dssp HHHHHHHHHSSCCEEEECCCCCC
T ss_pred HHHHHHHhcCCCCEEEECCCCCC
Confidence 544221 136999999876543
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=80.32 E-value=6.4 Score=31.05 Aligned_cols=79 Identities=6% Similarity=-0.048 Sum_probs=51.4
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~~ 110 (179)
.+++||=.|++ ||.-..+++++.. .+.+|+.+|.++.. ...++.++++|+++.+..++
T Consensus 20 ~~k~vlVTGas-~gIG~aia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 87 (273)
T 1ae1_A 20 KGTTALVTGGS-KGIGYAIVEELAG-----------LGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDK 87 (273)
T ss_dssp TTCEEEEESCS-SHHHHHHHHHHHH-----------TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred CCCEEEEECCc-chHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHH
Confidence 46788888875 5555555555431 14689999987521 12367889999999876555
Q ss_pred HHhhcC---CCCccEEeeCCCCCC
Q 030299 111 VIRHFD---GCKADLVVCDGAPDV 131 (179)
Q Consensus 111 l~~~~~---~~~~D~VlsD~~~~~ 131 (179)
+.+... ++.+|+|+++.+...
T Consensus 88 ~~~~~~~~~~g~id~lv~nAg~~~ 111 (273)
T 1ae1_A 88 LMQTVAHVFDGKLNILVNNAGVVI 111 (273)
T ss_dssp HHHHHHHHTTSCCCEEEECCCCCC
T ss_pred HHHHHHHHcCCCCcEEEECCCCCC
Confidence 543221 147999999987543
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=80.24 E-value=1.7 Score=34.24 Aligned_cols=79 Identities=13% Similarity=0.050 Sum_probs=51.6
Q ss_pred CCCEEEEEccC-CChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CCCCeeEEeccccchhhHHH
Q 030299 41 GVKRVVDLCAA-PGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 41 ~g~~VlDLgag-pGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~~~~v~~i~gDi~~~~~~~~ 110 (179)
.+++||=.|++ .||.-..+++++.. .+.+|+.+|.++.. ...++.++++|+++.+..++
T Consensus 7 ~~k~vlVTGas~~~gIG~~ia~~l~~-----------~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~ 75 (261)
T 2wyu_A 7 SGKKALVMGVTNQRSLGFAIAAKLKE-----------AGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDA 75 (261)
T ss_dssp TTCEEEEESCCSSSSHHHHHHHHHHH-----------HTCEEEEEESCGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHH
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHH-----------CCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEECCCCCHHHHHH
Confidence 35688888987 36666666655431 14689999877520 12347888999999876555
Q ss_pred HHhhcC--CCCccEEeeCCCCC
Q 030299 111 VIRHFD--GCKADLVVCDGAPD 130 (179)
Q Consensus 111 l~~~~~--~~~~D~VlsD~~~~ 130 (179)
+.+... -+++|+|++..+..
T Consensus 76 ~~~~~~~~~g~iD~lv~~Ag~~ 97 (261)
T 2wyu_A 76 LFAGVKEAFGGLDYLVHAIAFA 97 (261)
T ss_dssp HHHHHHHHHSSEEEEEECCCCC
T ss_pred HHHHHHHHcCCCCEEEECCCCC
Confidence 544221 13699999988643
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=80.15 E-value=4.3 Score=32.40 Aligned_cols=79 Identities=14% Similarity=0.146 Sum_probs=51.1
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-------CCCCeeEEeccccchhhHHHHHh
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------PIEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-------~~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
.+++||=-|++.| .-..+++++.. .+..|+.+|.++.. ....+.++++|+++.+..+++.+
T Consensus 26 ~~k~vlVTGas~G-IG~aia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 93 (277)
T 4dqx_A 26 NQRVCIVTGGGSG-IGRATAELFAK-----------NGAYVVVADVNEDAAVRVANEIGSKAFGVRVDVSSAKDAESMVE 93 (277)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHH-----------TTCEEEEEESSHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCcH-HHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHH
Confidence 4667888887654 55555554421 14789999987631 12467889999999876555544
Q ss_pred hcC--CCCccEEeeCCCCCC
Q 030299 114 HFD--GCKADLVVCDGAPDV 131 (179)
Q Consensus 114 ~~~--~~~~D~VlsD~~~~~ 131 (179)
... -+++|+|+++.+...
T Consensus 94 ~~~~~~g~iD~lv~nAg~~~ 113 (277)
T 4dqx_A 94 KTTAKWGRVDVLVNNAGFGT 113 (277)
T ss_dssp HHHHHHSCCCEEEECCCCCC
T ss_pred HHHHHcCCCCEEEECCCcCC
Confidence 321 136899999987543
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=80.11 E-value=4.4 Score=31.70 Aligned_cols=78 Identities=14% Similarity=0.054 Sum_probs=50.3
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------C-CCCeeEEeccccchhhHHHHHh
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P-IEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~-~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
.+++||=.|++ ||.-..+++++.. .+.+|+.+|.++.. . ...+.++++|+++.+..+++.+
T Consensus 7 ~~k~vlVTGas-~gIG~~ia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 74 (259)
T 4e6p_A 7 EGKSALITGSA-RGIGRAFAEAYVR-----------EGATVAIADIDIERARQAAAEIGPAAYAVQMDVTRQDSIDAAIA 74 (259)
T ss_dssp TTCEEEEETCS-SHHHHHHHHHHHH-----------TTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHhCCCceEEEeeCCCHHHHHHHHH
Confidence 35678877866 5555555554432 14689999987531 1 2467889999999876554443
Q ss_pred hcC--CCCccEEeeCCCCC
Q 030299 114 HFD--GCKADLVVCDGAPD 130 (179)
Q Consensus 114 ~~~--~~~~D~VlsD~~~~ 130 (179)
... -+++|+|+++.+..
T Consensus 75 ~~~~~~g~id~lv~~Ag~~ 93 (259)
T 4e6p_A 75 ATVEHAGGLDILVNNAALF 93 (259)
T ss_dssp HHHHHSSSCCEEEECCCCC
T ss_pred HHHHHcCCCCEEEECCCcC
Confidence 221 13699999998753
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=80.09 E-value=5.6 Score=31.05 Aligned_cols=78 Identities=6% Similarity=-0.092 Sum_probs=50.2
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~~ 110 (179)
.+++||=.|++ ||.-..+++++.. .+..|+.+|.++.. .-.++.++++|+++.+..++
T Consensus 8 ~~k~vlVTGas-~giG~~ia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 75 (260)
T 2ae2_A 8 EGCTALVTGGS-RGIGYGIVEELAS-----------LGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQE 75 (260)
T ss_dssp TTCEEEEESCS-SHHHHHHHHHHHH-----------TTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHH
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHH
Confidence 46678877865 5555555554431 14689999987521 01357788999999876555
Q ss_pred HHhhcC---CCCccEEeeCCCCC
Q 030299 111 VIRHFD---GCKADLVVCDGAPD 130 (179)
Q Consensus 111 l~~~~~---~~~~D~VlsD~~~~ 130 (179)
+.+... .+.+|+|+++.+..
T Consensus 76 ~~~~~~~~~~g~id~lv~~Ag~~ 98 (260)
T 2ae2_A 76 LMNTVANHFHGKLNILVNNAGIV 98 (260)
T ss_dssp HHHHHHHHTTTCCCEEEECCCCC
T ss_pred HHHHHHHHcCCCCCEEEECCCCC
Confidence 543221 14699999998754
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=80.06 E-value=6.6 Score=31.59 Aligned_cols=73 Identities=16% Similarity=0.027 Sum_probs=48.7
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------------CCCCeeEEeccccch
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------------PIEGVIQVQGDITNA 105 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------------~~~~v~~i~gDi~~~ 105 (179)
++||=.| |+|+.-..+++++.. .+..|+++|..+.. ...++.++++|+++.
T Consensus 3 ~~vlVtG-atG~iG~~l~~~L~~-----------~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~ 70 (348)
T 1ek6_A 3 EKVLVTG-GAGYIGSHTVLELLE-----------AGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQ 70 (348)
T ss_dssp SEEEEET-TTSHHHHHHHHHHHH-----------TTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCH
T ss_pred CEEEEEC-CCCHHHHHHHHHHHH-----------CCCEEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCH
Confidence 4666666 457777776665531 14689999865421 024688999999998
Q ss_pred hhHHHHHhhcCCCCccEEeeCCCCC
Q 030299 106 RTAEVVIRHFDGCKADLVVCDGAPD 130 (179)
Q Consensus 106 ~~~~~l~~~~~~~~~D~VlsD~~~~ 130 (179)
+..+++.+.. .+|+|++.++..
T Consensus 71 ~~~~~~~~~~---~~d~vih~A~~~ 92 (348)
T 1ek6_A 71 GALQRLFKKY---SFMAVIHFAGLK 92 (348)
T ss_dssp HHHHHHHHHC---CEEEEEECCSCC
T ss_pred HHHHHHHHhc---CCCEEEECCCCc
Confidence 7766665432 689999987643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 179 | ||||
| d1ej0a_ | 180 | c.66.1.2 (A:) RNA methyltransferase FtsJ {Escheric | 5e-27 | |
| d2p41a1 | 257 | c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)- | 6e-21 |
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Score = 98.4 bits (244), Expect = 5e-27
Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 12/130 (9%)
Query: 20 GWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP 79
G R+R+ FKL +I + +F+ VVDL AAPG WSQ + + G
Sbjct: 1 GLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVT------------QIGGKG 48
Query: 80 LIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDE 139
I+A DL PM PI GV +QGD + + ++ K +V+ D AP+++G +D
Sbjct: 49 RIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDI 108
Query: 140 FVQSQLILAV 149
L+
Sbjct: 109 PRAMYLVELA 118
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Score = 84.6 bits (209), Expect = 6e-21
Identities = 23/144 (15%), Positives = 39/144 (27%), Gaps = 18/144 (12%)
Query: 6 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYL 65
++ R + +R + KL E + +VVDL G WS
Sbjct: 32 TLAKEGIKRGETDHHAVSRGSAKLRWFVERNLVTPE-GKVVDLGCGRGGWSYYC------ 84
Query: 66 PAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVC 125
L L PI + + V + + D ++C
Sbjct: 85 -GGLKNVREV--KGLTKGGPGH-EEPIPMSTYGWNLVR--LQSGVDVFFIPPERCDTLLC 138
Query: 126 DGAPDVTGLHDMDEFVQSQLILAV 149
D + V++ L V
Sbjct: 139 DIGE-----SSPNPTVEAGRTLRV 157
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 179 | |||
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 100.0 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 99.85 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.18 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.18 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.09 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.08 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.07 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 99.03 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 99.02 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 98.97 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 98.97 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 98.97 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 98.9 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 98.89 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 98.88 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 98.87 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 98.87 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 98.86 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.84 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 98.84 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 98.83 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 98.82 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 98.81 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 98.8 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 98.8 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 98.8 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.77 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.77 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 98.76 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 98.76 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.73 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 98.71 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 98.7 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 98.7 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 98.7 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 98.69 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.68 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 98.68 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 98.68 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 98.66 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 98.66 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 98.65 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 98.64 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.64 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.63 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 98.63 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 98.62 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 98.61 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 98.6 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 98.58 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 98.57 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.56 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 98.52 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 98.51 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 98.5 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.48 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.44 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 98.4 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.37 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.36 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.31 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 98.3 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 98.3 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.27 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.23 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.23 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.16 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.12 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 98.07 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.03 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.01 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 97.83 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 97.79 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 97.78 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 97.64 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 97.64 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 97.59 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 97.58 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 97.46 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.44 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.43 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 97.35 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 97.32 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 97.28 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 97.25 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 97.17 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 97.06 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 96.77 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 96.59 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 96.43 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 96.27 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 96.12 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 96.1 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 96.02 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.8 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 95.68 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 95.65 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 95.28 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 94.61 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 94.5 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 94.47 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 94.42 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 94.27 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 94.15 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 93.68 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 93.44 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 93.34 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 93.33 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 92.82 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 92.81 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 92.46 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 92.33 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 92.19 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 92.06 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 91.31 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 91.15 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 91.0 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 91.0 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 90.92 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 90.67 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 89.7 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 89.3 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 89.28 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 88.99 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 88.75 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 88.7 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 88.44 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 87.82 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 87.63 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 87.19 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 86.51 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 86.39 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 85.94 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 85.15 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 84.75 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 84.71 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 84.68 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 84.63 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 84.52 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 84.19 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 83.84 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 83.02 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 82.98 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 82.94 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 81.5 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 81.36 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 81.27 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 81.06 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 80.64 |
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1e-36 Score=239.97 Aligned_cols=142 Identities=31% Similarity=0.397 Sum_probs=132.3
Q ss_pred CCcchhhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCeeEEe
Q 030299 20 GWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQ 99 (179)
Q Consensus 20 ~~~sRaa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~~~~v~~i~ 99 (179)
||||||||||.||+++|++++++.+||||||+||||+|++.++.+. .+.|+|+|+.||++++|+.+++
T Consensus 1 GyrsRaafKL~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~------------~~~v~~vDl~~~~~i~~~~~~~ 68 (180)
T d1ej0a_ 1 GLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGG------------KGRIIACDLLPMDPIVGVDFLQ 68 (180)
T ss_dssp CCSCHHHHHHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCT------------TCEEEEEESSCCCCCTTEEEEE
T ss_pred CchhHHHHHHHHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccc------------cceEEEeecccccccCCceEee
Confidence 8999999999999999999999999999999999999999999874 6899999999999999999999
Q ss_pred ccccchhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHHHHH------------------HHHHHHH
Q 030299 100 GDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSIQFF------------------IYELVFC 161 (179)
Q Consensus 100 gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~~~~------------------~~~~~~~ 161 (179)
+|+++.++...+.......++|+|+|||+|+++|.++.||..+.+|++++|..++ ...+++.
T Consensus 69 ~d~~~~~~~~~~~~~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~~~~l~~~ 148 (180)
T d1ej0a_ 69 GDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLRE 148 (180)
T ss_dssp SCTTSHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHH
T ss_pred cccccchhhhhhhhhccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCccHHHHHHH
Confidence 9999998888887777778999999999999999999999999999999998763 2678999
Q ss_pred HHHhhceEEEee
Q 030299 162 LRQLLQYVILDG 173 (179)
Q Consensus 162 ~~~~f~~v~~~~ 173 (179)
|+++|++|.+.+
T Consensus 149 l~~~F~~V~~~K 160 (180)
T d1ej0a_ 149 IRSLFTKVKVRK 160 (180)
T ss_dssp HHHHEEEEEEEC
T ss_pred HHhhcCEEEEEC
Confidence 999999999764
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=99.85 E-value=5.3e-22 Score=162.10 Aligned_cols=146 Identities=15% Similarity=0.126 Sum_probs=103.2
Q ss_pred CchHHHHHHhhCCcchhhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCC-
Q 030299 9 RDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQ- 87 (179)
Q Consensus 9 ~d~y~~~a~~~~~~sRaa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~- 87 (179)
+|.+.+.+...+|+||++|||.+|++++ +++|+.+|+||||||||||++++.+.+ ...|.|+|+.
T Consensus 35 ~~~~~~~~~~~~~~SR~~~Kl~~~~~~~-~~~~~~~vvDlG~~pGgws~~~a~~~~-------------v~~V~g~~iG~ 100 (257)
T d2p41a1 35 KEGIKRGETDHHAVSRGSAKLRWFVERN-LVTPEGKVVDLGCGRGGWSYYCGGLKN-------------VREVKGLTKGG 100 (257)
T ss_dssp HHHHHTTCCSSCCSSTHHHHHHHHHHTT-SSCCCEEEEEETCTTSHHHHHHHTSTT-------------EEEEEEECCCS
T ss_pred HHHHHhccccCCCcchHHHHHHHHHHhc-CccCCCeEEEecCCCChHHHHHHhhcC-------------CCceeEEEecC
Confidence 3455555555679999999999999998 779988999999999999999998753 3567777773
Q ss_pred --CCCCCCCeeEEeccccchhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHHHH-----H------
Q 030299 88 --PMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSIQF-----F------ 154 (179)
Q Consensus 88 --~~~~~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~~~-----~------ 154 (179)
.+.|++.. ....|+.+......+ ..++++.+|+|+|||+|+ +|.+..|+..+++++..|.... |
T Consensus 101 d~~e~P~~~~-~~~~ni~~~~~~~dv-~~l~~~~~D~vlcDm~es-s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~ 177 (257)
T d2p41a1 101 PGHEEPIPMS-TYGWNLVRLQSGVDV-FFIPPERCDTLLCDIGES-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLN 177 (257)
T ss_dssp TTSCCCCCCC-STTGGGEEEECSCCT-TTSCCCCCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESC
T ss_pred ccccCCcccc-ccccccccchhhhhH-HhcCCCcCCEEEeeCCCC-CCCchhhhhhHHHHHHHHHHHcccCCEEEEEECC
Confidence 23444322 112222222111111 124567899999999997 9999999999988877666532 1
Q ss_pred -----HHHHHHHHHHhhceEEE
Q 030299 155 -----IYELVFCLRQLLQYVIL 171 (179)
Q Consensus 155 -----~~~~~~~~~~~f~~v~~ 171 (179)
+..++..|++.|..+.+
T Consensus 178 py~~~v~e~le~lq~~fgg~lV 199 (257)
T d2p41a1 178 PYMSSVIEKMEALQRKHGGALV 199 (257)
T ss_dssp CCSHHHHHHHHHHHHHHCCEEE
T ss_pred CCChHHHHHHHHHHHHhCCeeE
Confidence 35678888888876544
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.18 E-value=1.9e-11 Score=96.15 Aligned_cols=72 Identities=21% Similarity=0.265 Sum_probs=59.3
Q ss_pred HHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCeeEEeccc
Q 030299 34 EEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDI 102 (179)
Q Consensus 34 ~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~~~v~~i~gDi 102 (179)
+..+ ++||++|||||||+|.++..++++. +.|+|+|+|+. ..++++.++++|+
T Consensus 10 ~~~~-~~~~~rILDiGcGtG~~~~~la~~~---------------~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~ 73 (234)
T d1xxla_ 10 KTAE-CRAEHRVLDIGAGAGHTALAFSPYV---------------QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTA 73 (234)
T ss_dssp HHHT-CCTTCEEEEESCTTSHHHHHHGGGS---------------SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBT
T ss_pred HHhC-CCCCCEEEEeCCcCcHHHHHHHHhC---------------CeEEEEeCChhhhhhhhhhhccccccccccccccc
Confidence 3444 4999999999999999999998863 58999999983 1357899999999
Q ss_pred cchhhHHHHHhhcCCCCccEEeeCCCC
Q 030299 103 TNARTAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 103 ~~~~~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
.+.+ +++++||+|+|..+.
T Consensus 74 ~~~~--------~~~~~fD~v~~~~~l 92 (234)
T d1xxla_ 74 ESLP--------FPDDSFDIITCRYAA 92 (234)
T ss_dssp TBCC--------SCTTCEEEEEEESCG
T ss_pred cccc--------ccccccceeeeecee
Confidence 9865 567899999997653
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.18 E-value=3.2e-11 Score=93.85 Aligned_cols=76 Identities=24% Similarity=0.315 Sum_probs=59.9
Q ss_pred HHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCeeE
Q 030299 29 LLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQ 97 (179)
Q Consensus 29 L~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~~~v~~ 97 (179)
|.++.+... ++++++|||||||+|.++..++++. .+|+|+|+++. ...+++++
T Consensus 4 ~~~ll~~~~-l~~~~rVLDiGcG~G~~~~~l~~~~---------------~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~ 67 (231)
T d1vl5a_ 4 LAKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFV---------------KKVVAFDLTEDILKVARAFIEGNGHQQVEY 67 (231)
T ss_dssp HHHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGS---------------SEEEEEESCHHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHhcC-CCCcCEEEEecccCcHHHHHHHHhC---------------CEEEEEECCHHHHhhhhhcccccccccccc
Confidence 344444444 4899999999999999999998763 58999999973 23678999
Q ss_pred EeccccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 98 VQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 98 i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
+++|+++.+ ++++.||+|++..+
T Consensus 68 ~~~d~~~l~--------~~~~~fD~v~~~~~ 90 (231)
T d1vl5a_ 68 VQGDAEQMP--------FTDERFHIVTCRIA 90 (231)
T ss_dssp EECCC-CCC--------SCTTCEEEEEEESC
T ss_pred ccccccccc--------cccccccccccccc
Confidence 999999875 46679999998765
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.09 E-value=1.3e-10 Score=92.04 Aligned_cols=77 Identities=21% Similarity=0.269 Sum_probs=60.0
Q ss_pred cHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCe
Q 030299 28 KLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGV 95 (179)
Q Consensus 28 KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v 95 (179)
++..+-+.+++ +||++|||||||+|+++..++++.+ ..|+|+|+++.. .+ .++
T Consensus 21 ~~~~l~~~~~l-~pg~~VLDiGCG~G~~~~~la~~~~--------------~~v~GvD~s~~~~~~ar~~~~~~gl~~~v 85 (245)
T d1nkva_ 21 KYATLGRVLRM-KPGTRILDLGSGSGEMLCTWARDHG--------------ITGTGIDMSSLFTAQAKRRAEELGVSERV 85 (245)
T ss_dssp HHHHHHHHTCC-CTTCEEEEETCTTCHHHHHHHHHTC--------------CEEEEEESCHHHHHHHHHHHHHTTCTTTE
T ss_pred HHHHHHHHcCC-CCCCEEEEEcCCCCHHHHHHHHhcC--------------CEEEEEecccchhhHHHHHHHHhhccccc
Confidence 34445555554 8999999999999999999998754 699999999831 22 358
Q ss_pred eEEeccccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 96 IQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 96 ~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
+++++|+.+.. .+++||+|+|-++
T Consensus 86 ~~~~~d~~~~~---------~~~~fD~v~~~~~ 109 (245)
T d1nkva_ 86 HFIHNDAAGYV---------ANEKCDVAACVGA 109 (245)
T ss_dssp EEEESCCTTCC---------CSSCEEEEEEESC
T ss_pred hhhhhHHhhcc---------ccCceeEEEEEeh
Confidence 99999998852 4578999998664
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.08 E-value=1.5e-10 Score=93.46 Aligned_cols=77 Identities=16% Similarity=0.201 Sum_probs=60.8
Q ss_pred HhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeE
Q 030299 30 LQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQ 97 (179)
Q Consensus 30 ~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~ 97 (179)
.+......-++++.+|||||||+|+++.+++++.+ ..|+|+|+++.. .+ .++++
T Consensus 56 ~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~--------------~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~ 121 (282)
T d2o57a1 56 ASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFG--------------VSIDCLNIAPVQNKRNEEYNNQAGLADNITV 121 (282)
T ss_dssp HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC--------------CEEEEEESCHHHHHHHHHHHHHHTCTTTEEE
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCC--------------cEEEEEeccchhhhhhhcccccccccccccc
Confidence 33333444568999999999999999999998864 689999999831 12 47999
Q ss_pred EeccccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 98 VQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 98 i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
+++|+.+.+ +++++||+|++-.+
T Consensus 122 ~~~d~~~l~--------~~~~sfD~V~~~~~ 144 (282)
T d2o57a1 122 KYGSFLEIP--------CEDNSYDFIWSQDA 144 (282)
T ss_dssp EECCTTSCS--------SCTTCEEEEEEESC
T ss_pred ccccccccc--------ccccccchhhccch
Confidence 999999875 46678999998654
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.07 E-value=1.7e-10 Score=92.01 Aligned_cols=74 Identities=22% Similarity=0.187 Sum_probs=60.4
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CCCCCeeEEeccccchhhHH
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~~~~~v~~i~gDi~~~~~~~ 109 (179)
++||++|||||||+|..+.++++.+++ .++|+|+|+++. +...++..+.+|..+++...
T Consensus 71 i~pG~~VLDlGaGsG~~t~~la~~VG~------------~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~ 138 (227)
T d1g8aa_ 71 IKPGKSVLYLGIASGTTASHVSDIVGW------------EGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYR 138 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCT------------TSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGT
T ss_pred cCCCCEEEEeccCCCHHHHHHHHHhCC------------CCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCccccc
Confidence 589999999999999999999999975 799999999983 23568889999998875321
Q ss_pred HHHhhcCCCCccEEeeCCCC
Q 030299 110 VVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~~ 129 (179)
.....+|+|++|.+.
T Consensus 139 -----~~~~~vD~i~~d~~~ 153 (227)
T d1g8aa_ 139 -----ALVPKVDVIFEDVAQ 153 (227)
T ss_dssp -----TTCCCEEEEEECCCS
T ss_pred -----ccccceEEEEEEccc
Confidence 223579999999754
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.03 E-value=5.1e-10 Score=91.75 Aligned_cols=93 Identities=18% Similarity=0.248 Sum_probs=66.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
++|.+|||+||||||.|..+++.+. ++.|+|+|+++-+ ...++.....|......
T Consensus 101 ~~g~~vLD~CAaPGgKt~~la~l~~-------------~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~- 166 (284)
T d1sqga2 101 QNGEHILDLCAAPGGKTTHILEVAP-------------EAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQW- 166 (284)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHCT-------------TCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHH-
T ss_pred cccceeEeccCccccchhhhhhhhh-------------hhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchh-
Confidence 6789999999999999999998754 5899999999853 23444444444333221
Q ss_pred HHHHhhcCCCCccEEeeCCCCCCCCCCccc---------------HHHHHHHHHHHHHH
Q 030299 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMD---------------EFVQSQLILAVSIQ 152 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d---------------~~~q~~L~~~AL~~ 152 (179)
.....||.||.|.+|+.+|.+... +.+|.+|+..|+..
T Consensus 167 ------~~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~ 219 (284)
T d1sqga2 167 ------CGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPH 219 (284)
T ss_dssp ------HTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGG
T ss_pred ------cccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHh
Confidence 234679999999999999975211 24466666666553
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.02 E-value=4.5e-10 Score=93.35 Aligned_cols=93 Identities=18% Similarity=0.134 Sum_probs=71.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
++|++|||+||||||.|..+++.+.. .+.|+|+|+++-+ ...++.....|.+....
T Consensus 115 ~~g~~vlD~CAapGgKt~~l~~~~~~------------~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~- 181 (313)
T d1ixka_ 115 KPGEIVADMAAAPGGKTSYLAQLMRN------------DGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGE- 181 (313)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTTT------------CSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGG-
T ss_pred CccceeeecccchhhhhHhhhhhccc------------ccceeeeccCHHHHHHHHHHHHHHHhhcccccccccccccc-
Confidence 67999999999999999999998864 6899999999731 35688777888776542
Q ss_pred HHHHhhcCCCCccEEeeCCCCCCCCCCccc---------------HHHHHHHHHHHHHH
Q 030299 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMD---------------EFVQSQLILAVSIQ 152 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d---------------~~~q~~L~~~AL~~ 152 (179)
....||.||.|.+|+.+|.+..+ ...|.+|...|+..
T Consensus 182 -------~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~ 233 (313)
T d1ixka_ 182 -------LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEV 233 (313)
T ss_dssp -------GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------ccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhhe
Confidence 24689999999999999986322 14466666666654
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.97 E-value=4.2e-10 Score=88.35 Aligned_cols=72 Identities=24% Similarity=0.165 Sum_probs=58.0
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CCCCCeeEEeccccchhhHH
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~~~~~v~~i~gDi~~~~~~~ 109 (179)
++||++|||||||||..+.++++.++ .++|+|+|++|. +...|+.++.+|..+++...
T Consensus 54 lkpg~~VLDlGcG~G~~~~~la~~v~-------------~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~ 120 (209)
T d1nt2a_ 54 LRGDERVLYLGAASGTTVSHLADIVD-------------EGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYS 120 (209)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTT-------------TSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTT
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHhcc-------------CCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccc
Confidence 58999999999999999999999986 579999999982 12569999999999876321
Q ss_pred HHHhhcCCCCccEEeeCCC
Q 030299 110 VVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~ 128 (179)
.....+|+|++|..
T Consensus 121 -----~~~~~vd~v~~~~~ 134 (209)
T d1nt2a_ 121 -----GIVEKVDLIYQDIA 134 (209)
T ss_dssp -----TTCCCEEEEEECCC
T ss_pred -----cccceEEEEEeccc
Confidence 12246888888864
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=7.2e-10 Score=91.20 Aligned_cols=79 Identities=20% Similarity=0.223 Sum_probs=59.9
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
++|++|||+||||||+|.++++.++. .+.|+|+|+++.+ ...++.....|..+....
T Consensus 93 ~~g~~vLD~cAapGgKt~~la~l~~~------------~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~ 160 (293)
T d2b9ea1 93 PPGSHVIDACAAPGNKTSHLAALLKN------------QGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPS 160 (293)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTT------------CSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTT
T ss_pred CccceEEecccchhhHHHHHHHHhcC------------CceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhccc
Confidence 67999999999999999999999864 6899999999731 357888888888765321
Q ss_pred HHHHhhcCCCCccEEeeCCCCCCCCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGAPDVTGLH 135 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~~~~g~~ 135 (179)
. -..++||.||.|.+|+.+|.+
T Consensus 161 ~-----~~~~~fD~VL~DaPCSg~G~~ 182 (293)
T d2b9ea1 161 D-----PRYHEVHYILLDPSCSGSGMP 182 (293)
T ss_dssp C-----GGGTTEEEEEECCCCCC----
T ss_pred c-----cccceeeEEeecCcccchhhh
Confidence 0 012479999999999999974
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=98.97 E-value=8.5e-10 Score=86.59 Aligned_cols=75 Identities=23% Similarity=0.207 Sum_probs=60.8
Q ss_pred HHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCeeEEeccc
Q 030299 34 EEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDI 102 (179)
Q Consensus 34 ~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~~~v~~i~gDi 102 (179)
+..+ +++|++|||||||+|.+|..+++.+++ .+.|+++|+++. ....|+.++++|.
T Consensus 69 ~~l~-l~~g~~VLdiG~GtG~~s~~la~~~~~------------~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~ 135 (213)
T d1dl5a1 69 EWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGE------------KGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDG 135 (213)
T ss_dssp HHTT-CCTTCEEEEECCTTSHHHHHHHHHHCT------------TCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG
T ss_pred Hhhh-ccccceEEEecCccchhHHHHHHHhCC------------CCcEEEeecchhhHHHhhhhHhhhcccccccccCch
Confidence 3344 589999999999999999999999874 689999999983 1367899999998
Q ss_pred cchhhHHHHHhhcCCCCccEEeeCCCC
Q 030299 103 TNARTAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 103 ~~~~~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
.+... .+.+||+|++++++
T Consensus 136 ~~~~~--------~~~~fD~I~~~~~~ 154 (213)
T d1dl5a1 136 YYGVP--------EFSPYDVIFVTVGV 154 (213)
T ss_dssp GGCCG--------GGCCEEEEEECSBB
T ss_pred HHccc--------cccchhhhhhhccH
Confidence 77432 24579999998864
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=98.90 E-value=9.9e-10 Score=88.63 Aligned_cols=69 Identities=14% Similarity=0.193 Sum_probs=58.6
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC------CCCCCeeEEeccccchhhHHHHHh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------APIEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~------~~~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
.++.+|||+|||+|.++..++++.+ +..|+|+|+++. +..+++.++++|+.+.+
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~-------------~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~------- 142 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALP-------------EITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLP------- 142 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCT-------------TSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCS-------
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCC-------------CCEEEEecchHhhhhhhhcccccccceeeehhhcc-------
Confidence 5678999999999999999999865 579999999983 23578999999999975
Q ss_pred hcCCCCccEEeeCCCC
Q 030299 114 HFDGCKADLVVCDGAP 129 (179)
Q Consensus 114 ~~~~~~~D~VlsD~~~ 129 (179)
+++..||+|++..+|
T Consensus 143 -~~~~sfD~v~~~~~~ 157 (268)
T d1p91a_ 143 -FSDTSMDAIIRIYAP 157 (268)
T ss_dssp -BCTTCEEEEEEESCC
T ss_pred -CCCCCEEEEeecCCH
Confidence 567899999987654
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.89 E-value=9.9e-10 Score=84.27 Aligned_cols=67 Identities=21% Similarity=0.252 Sum_probs=54.2
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhH
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~ 108 (179)
++++.+|||||||+|.++..+++. ...|+|+|+++.. .-..+.++.+|+.+.+
T Consensus 35 l~~~~~ILDiGcG~G~~~~~la~~---------------~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~-- 97 (226)
T d1ve3a1 35 MKKRGKVLDLACGVGGFSFLLEDY---------------GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLS-- 97 (226)
T ss_dssp CCSCCEEEEETCTTSHHHHHHHHT---------------TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCC--
T ss_pred cCCCCEEEEECCCcchhhhhHhhh---------------hcccccccccccchhhhhhhhcccccccccccccccccc--
Confidence 678889999999999999999875 3689999999731 1245778899999865
Q ss_pred HHHHhhcCCCCccEEeeCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~ 128 (179)
++++.||+|++...
T Consensus 98 ------~~~~~fD~I~~~~~ 111 (226)
T d1ve3a1 98 ------FEDKTFDYVIFIDS 111 (226)
T ss_dssp ------SCTTCEEEEEEESC
T ss_pred ------ccCcCceEEEEecc
Confidence 46679999999653
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.88 E-value=1.4e-09 Score=88.59 Aligned_cols=70 Identities=17% Similarity=0.163 Sum_probs=60.3
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC--------------CCCCCeeEEeccccc
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM--------------APIEGVIQVQGDITN 104 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~--------------~~~~~v~~i~gDi~~ 104 (179)
++||++|||+|||+|..|.++++.+++ .++|+++|+++. ....++.++++|+.+
T Consensus 94 i~PG~~VLE~G~GsG~lt~~La~~vgp------------~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~ 161 (264)
T d1i9ga_ 94 IFPGARVLEAGAGSGALTLSLLRAVGP------------AGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLAD 161 (264)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCT------------TSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGG
T ss_pred CCCCCEEEecCcCCcHHHHHHHHhhCC------------CcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccc
Confidence 489999999999999999999999975 799999999973 124689999999988
Q ss_pred hhhHHHHHhhcCCCCccEEeeCCC
Q 030299 105 ARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 105 ~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
.+ +++..||.|+.|++
T Consensus 162 ~~--------~~~~~fDaV~ldlp 177 (264)
T d1i9ga_ 162 SE--------LPDGSVDRAVLDML 177 (264)
T ss_dssp CC--------CCTTCEEEEEEESS
T ss_pred cc--------ccCCCcceEEEecC
Confidence 64 56789999999974
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=98.87 E-value=2.5e-09 Score=86.30 Aligned_cols=69 Identities=14% Similarity=0.128 Sum_probs=58.5
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC------------CCCCCeeEEeccccchh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------------APIEGVIQVQGDITNAR 106 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~------------~~~~~v~~i~gDi~~~~ 106 (179)
++||++|||+|||+|..|.++++.+++ .++|+++|.++. ....++++..+|+.+.
T Consensus 83 i~pG~rVLEiG~GsG~lt~~la~~v~~------------~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~- 149 (250)
T d1yb2a1 83 LRPGMDILEVGVGSGNMSSYILYALNG------------KGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF- 149 (250)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHTT------------SSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-
T ss_pred CCCcCEEEEeeeeCcHHHHHHHHHhCC------------CcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-
Confidence 489999999999999999999999864 689999999982 1246899999999874
Q ss_pred hHHHHHhhcCCCCccEEeeCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
+++..||.|+.|+.
T Consensus 150 --------~~~~~fD~V~ld~p 163 (250)
T d1yb2a1 150 --------ISDQMYDAVIADIP 163 (250)
T ss_dssp --------CCSCCEEEEEECCS
T ss_pred --------cccceeeeeeecCC
Confidence 35678999999974
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=98.87 E-value=2.7e-09 Score=81.65 Aligned_cols=71 Identities=15% Similarity=0.107 Sum_probs=56.2
Q ss_pred HHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCeeEEeccc
Q 030299 34 EEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDI 102 (179)
Q Consensus 34 ~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~~~v~~i~gDi 102 (179)
+....+++| +|||||||+|..+.+++++ ...|+|+|+++. ...+++++..+|+
T Consensus 24 ~~~~~~~~g-rvLDiGcG~G~~~~~la~~---------------g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~ 87 (198)
T d2i6ga1 24 AAAKVVAPG-RTLDLGCGNGRNSLYLAAN---------------GYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDL 87 (198)
T ss_dssp HHHTTSCSC-EEEEETCTTSHHHHHHHHT---------------TCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCT
T ss_pred HHcccCCCC-cEEEECCCCCHHHHHHHHH---------------hhhhccccCcHHHHHHHHHHhhhccccchhhhheec
Confidence 344566777 9999999999999999986 368999999983 1356788889998
Q ss_pred cchhhHHHHHhhcCCCCccEEeeCCCC
Q 030299 103 TNARTAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 103 ~~~~~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
.+.. .+..||+|++....
T Consensus 88 ~~~~---------~~~~fD~I~~~~~~ 105 (198)
T d2i6ga1 88 NTLT---------FDGEYDFILSTVVM 105 (198)
T ss_dssp TTCC---------CCCCEEEEEEESCG
T ss_pred cccc---------ccccccEEEEeeee
Confidence 8864 34689999997653
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.86 E-value=3.2e-09 Score=84.43 Aligned_cols=72 Identities=21% Similarity=0.220 Sum_probs=55.1
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CCCCCeeEEeccccchhhHH
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~~~~~v~~i~gDi~~~~~~~ 109 (179)
++||++|||||||+|.++.++++..+ .+.|+|+|++|. ...+|+..+.+|..+++...
T Consensus 72 ikpG~~VLDlGcGsG~~~~~la~~~~-------------~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~ 138 (230)
T d1g8sa_ 72 IKRDSKILYLGASAGTTPSHVADIAD-------------KGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYA 138 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTT-------------TSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGT
T ss_pred CCCCCEEEEeCEEcCHHHHHHHHhCC-------------CCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccc
Confidence 58999999999999999999999765 589999999982 23578889999998876421
Q ss_pred HHHhhcCCCCccEEeeCCC
Q 030299 110 VVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~ 128 (179)
.....+|+++++..
T Consensus 139 -----~~~~~v~~i~~~~~ 152 (230)
T d1g8sa_ 139 -----NIVEKVDVIYEDVA 152 (230)
T ss_dssp -----TTCCCEEEEEECCC
T ss_pred -----cccceeEEeecccc
Confidence 11224566666653
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.84 E-value=3.4e-09 Score=82.73 Aligned_cols=64 Identities=20% Similarity=0.162 Sum_probs=51.9
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CCCCeeEEeccccchhhHHHHHhh
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRH 114 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~~~v~~i~gDi~~~~~~~~l~~~ 114 (179)
.|.+|||||||+|..+..++.+ + ...|+|+|+++.. ...++.++.+|+.+.
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~-g-------------a~~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l--------- 104 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLL-G-------------AESVTAFDIDPDAIETAKRNCGGVNFMVADVSEI--------- 104 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHT-T-------------BSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGC---------
T ss_pred CCCEEEEeCCCCcHHHHHHHHc-C-------------CCcccccccCHHHHHHHHHccccccEEEEehhhc---------
Confidence 5889999999999998877665 3 2589999999842 357889999999774
Q ss_pred cCCCCccEEeeCCCC
Q 030299 115 FDGCKADLVVCDGAP 129 (179)
Q Consensus 115 ~~~~~~D~VlsD~~~ 129 (179)
+ ++||+|++|.++
T Consensus 105 -~-~~fD~Vi~NPPf 117 (197)
T d1ne2a_ 105 -S-GKYDTWIMNPPF 117 (197)
T ss_dssp -C-CCEEEEEECCCC
T ss_pred -C-CcceEEEeCccc
Confidence 2 579999999765
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.84 E-value=3.3e-09 Score=86.54 Aligned_cols=85 Identities=11% Similarity=0.053 Sum_probs=60.7
Q ss_pred cHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCe
Q 030299 28 KLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGV 95 (179)
Q Consensus 28 KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v 95 (179)
|+..+.++.+ ++||++|||||||+|+++.+++++.+ ..|+|+|+++.+ .+ ..+
T Consensus 40 k~~~~~~~l~-l~~g~~VLDiGCG~G~~a~~~a~~~g--------------~~v~gi~ls~~q~~~a~~~~~~~~l~~~~ 104 (280)
T d2fk8a1 40 KVDLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERFD--------------VNVIGLTLSKNQHARCEQVLASIDTNRSR 104 (280)
T ss_dssp HHHHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHHC--------------CEEEEEESCHHHHHHHHHHHHTSCCSSCE
T ss_pred HHHHHHHHcC-CCCCCEEEEecCCchHHHHHHHHhCc--------------eeEEEecchHHHHHHHHHHHHhhccccch
Confidence 3444445555 58999999999999999999998875 699999999841 12 245
Q ss_pred eEEeccccchhhHHHHHhhcCCCCccEEeeCCCCCCCCCCccc
Q 030299 96 IQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMD 138 (179)
Q Consensus 96 ~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d 138 (179)
.+...|..+. ..+||.|+|-.....-+..+.+
T Consensus 105 ~~~~~d~~~~-----------~~~fD~i~si~~~eh~~~~~~~ 136 (280)
T d2fk8a1 105 QVLLQGWEDF-----------AEPVDRIVSIEAFEHFGHENYD 136 (280)
T ss_dssp EEEESCGGGC-----------CCCCSEEEEESCGGGTCGGGHH
T ss_pred hhhhhhhhhh-----------ccchhhhhHhhHHHHhhhhhHH
Confidence 5556665543 3589999998776555544433
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.83 E-value=2e-09 Score=82.15 Aligned_cols=67 Identities=22% Similarity=0.276 Sum_probs=54.4
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCC-CCeeEEeccccchh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------API-EGVIQVQGDITNAR 106 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~-~~v~~i~gDi~~~~ 106 (179)
+++|++|||+|||+|.++..++.+ .++|+|+|+++. ..+ ++++++++|+.+..
T Consensus 31 ~~~g~~VLDiGcGsG~~s~~lA~~---------------~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~ 95 (186)
T d1l3ia_ 31 PGKNDVAVDVGCGTGGVTLELAGR---------------VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEAL 95 (186)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHTT---------------SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHH
T ss_pred CCCCCEEEEEECCeEccccccccc---------------ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcc
Confidence 378999999999999999998865 368999999983 123 58999999987754
Q ss_pred hHHHHHhhcCCCCccEEeeCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
.....||.|++++.
T Consensus 96 --------~~~~~~D~v~~~~~ 109 (186)
T d1l3ia_ 96 --------CKIPDIDIAVVGGS 109 (186)
T ss_dssp --------TTSCCEEEEEESCC
T ss_pred --------cccCCcCEEEEeCc
Confidence 23468999999874
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=98.82 E-value=1.1e-09 Score=84.98 Aligned_cols=66 Identities=21% Similarity=0.238 Sum_probs=51.1
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----CCCCeeEEeccccchhhHHHHHh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----PIEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----~~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
++++.+|||+|||||.++..++++ ..+|+|+|+++.. ......++++|+.+.+
T Consensus 40 ~~~~~~vLDiGcG~G~~~~~l~~~---------------~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~------- 97 (246)
T d2avna1 40 LKNPCRVLDLGGGTGKWSLFLQER---------------GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLP------- 97 (246)
T ss_dssp CCSCCEEEEETCTTCHHHHHHHTT---------------TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCC-------
T ss_pred cCCCCEEEEECCCCchhccccccc---------------ceEEEEeecccccccccccccccccccccccccc-------
Confidence 467889999999999999999875 3689999999831 1112236789998865
Q ss_pred hcCCCCccEEeeCC
Q 030299 114 HFDGCKADLVVCDG 127 (179)
Q Consensus 114 ~~~~~~~D~VlsD~ 127 (179)
+++++||+|+|-+
T Consensus 98 -~~~~~fD~ii~~~ 110 (246)
T d2avna1 98 -FPSGAFEAVLALG 110 (246)
T ss_dssp -SCTTCEEEEEECS
T ss_pred -cccccccceeeec
Confidence 4567999999854
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=98.81 E-value=3.5e-09 Score=84.02 Aligned_cols=69 Identities=14% Similarity=0.023 Sum_probs=54.0
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------------CCCCeeEEeccccchh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PIEGVIQVQGDITNAR 106 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------------~~~~v~~i~gDi~~~~ 106 (179)
++++.+|||||||+|+.+..+++.- ...|+|+|+++.. ...++.+.++|+....
T Consensus 22 ~~~~~~VLDlGCG~G~~~~~~~~~~--------------~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~ 87 (252)
T d1ri5a_ 22 TKRGDSVLDLGCGKGGDLLKYERAG--------------IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRH 87 (252)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHHT--------------CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSC
T ss_pred CCCcCEEEEecccCcHHHHHHHHcC--------------CCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhc
Confidence 5789999999999999999988763 3689999999831 1247899999997654
Q ss_pred hHHHHHhhcCCCCccEEeeCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
. ..+.+||+|++..+
T Consensus 88 ~-------~~~~~fD~V~~~~~ 102 (252)
T d1ri5a_ 88 M-------DLGKEFDVISSQFS 102 (252)
T ss_dssp C-------CCSSCEEEEEEESC
T ss_pred c-------cccccceEEEEcce
Confidence 2 13568999998764
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=1.3e-09 Score=84.91 Aligned_cols=67 Identities=12% Similarity=0.014 Sum_probs=53.6
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
.++.+|||||||+|.++.+++.+.+ .+|+|+|+++.. ..++++++++|+++..
T Consensus 59 ~~~~~vLDiGcG~G~~~~~l~~~~~--------------~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~-- 122 (222)
T d2ex4a1 59 TGTSCALDCGAGIGRITKRLLLPLF--------------REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFT-- 122 (222)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTTC--------------SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCC--
T ss_pred CCCCEEEEeccCCCHhhHHHHHhcC--------------CEEEEeecCHHHhhccccccccccccccccccccccccc--
Confidence 4578999999999999999876643 589999999831 2356889999999865
Q ss_pred HHHHhhcCCCCccEEeeCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~ 128 (179)
+++.+||+|++...
T Consensus 123 ------~~~~~fD~I~~~~~ 136 (222)
T d2ex4a1 123 ------PEPDSYDVIWIQWV 136 (222)
T ss_dssp ------CCSSCEEEEEEESC
T ss_pred ------cccccccccccccc
Confidence 35678999999764
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.80 E-value=5.3e-09 Score=85.69 Aligned_cols=83 Identities=14% Similarity=0.067 Sum_probs=63.6
Q ss_pred hHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------------CCCCeeEE
Q 030299 31 QIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PIEGVIQV 98 (179)
Q Consensus 31 eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------------~~~~v~~i 98 (179)
.+-++.+ ++||++|||||||.|+.+.++++..+ ++|+|+++|+.+ ....+.+.
T Consensus 53 ~~~~~l~-l~~G~~VLDiGCG~G~~a~~~a~~~g--------------~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~ 117 (285)
T d1kpga_ 53 LALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYD--------------VNVVGLTLSKNQANHVQQLVANSENLRSKRVL 117 (285)
T ss_dssp HHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHC--------------CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEE
T ss_pred HHHHHcC-CCCCCEEEEecCcchHHHHHHHhcCC--------------cceEEEeccHHHHHHHHHHHHhhhhhhhhHHH
Confidence 3444455 48999999999999999999999875 799999999841 13578888
Q ss_pred eccccchhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccH
Q 030299 99 QGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDE 139 (179)
Q Consensus 99 ~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~ 139 (179)
.+|..+. + .+||.|+|=+....-|..+.+.
T Consensus 118 ~~d~~~~----------~-~~fD~i~si~~~eh~~~~~~~~ 147 (285)
T d1kpga_ 118 LAGWEQF----------D-EPVDRIVSIGAFEHFGHERYDA 147 (285)
T ss_dssp ESCGGGC----------C-CCCSEEEEESCGGGTCTTTHHH
T ss_pred Hhhhhcc----------c-ccccceeeehhhhhcCchhHHH
Confidence 8887663 2 5899999987776666655444
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=98.80 E-value=1.5e-09 Score=81.22 Aligned_cols=68 Identities=18% Similarity=0.010 Sum_probs=53.1
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------C---------------CCCe
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P---------------IEGV 95 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------~---------------~~~v 95 (179)
++||.+|||+|||+|.++.+++++ +..|+|+|+|+.. . ..++
T Consensus 18 ~~~~~rvLd~GCG~G~~a~~la~~---------------G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T d1pjza_ 18 VVPGARVLVPLCGKSQDMSWLSGQ---------------GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGI 82 (201)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHH---------------CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSS
T ss_pred CCCCCEEEEecCcCCHHHHHHHHc---------------CCceEeecccHHHHHHHHHHhccccchhhhhhhhhcccccc
Confidence 478999999999999999999987 3799999999720 0 2356
Q ss_pred eEEeccccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 96 IQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 96 ~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
.++++|+.+.... ....+|+|++...
T Consensus 83 ~~~~~d~~~l~~~-------~~~~~D~i~~~~~ 108 (201)
T d1pjza_ 83 EIWCGDFFALTAR-------DIGHCAAFYDRAA 108 (201)
T ss_dssp EEEEECCSSSTHH-------HHHSEEEEEEESC
T ss_pred ceecccccccccc-------cccceeEEEEEee
Confidence 7889999886532 2347899998654
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.77 E-value=2.2e-08 Score=77.80 Aligned_cols=82 Identities=18% Similarity=0.132 Sum_probs=57.7
Q ss_pred hhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCC
Q 030299 25 SAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEG 94 (179)
Q Consensus 25 aa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~ 94 (179)
.|-++..+-...+-+ .|.+|||+|||+|+++..++.+ + ...|+|+|+++.. .-..
T Consensus 31 ~a~~~~~~~~~~~dl-~g~~vLDlg~GtG~l~i~a~~~-g-------------~~~v~~vdi~~~~~~~a~~N~~~~~~~ 95 (201)
T d1wy7a1 31 AASELLWLAYSLGDI-EGKVVADLGAGTGVLSYGALLL-G-------------AKEVICVEVDKEAVDVLIENLGEFKGK 95 (201)
T ss_dssp HHHHHHHHHHHTTSS-TTCEEEEETCTTCHHHHHHHHT-T-------------CSEEEEEESCHHHHHHHHHHTGGGTTS
T ss_pred HHHHHHHHHHhcCCC-CCCEEEECcCcchHHHHHHHHc-C-------------CCEEEEEcCcHHHHHHHHHHHHHcCCC
Confidence 344555444444332 5789999999999999888765 3 3689999999831 1135
Q ss_pred eeEEeccccchhhHHHHHhhcCCCCccEEeeCCCCCCC
Q 030299 95 VIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVT 132 (179)
Q Consensus 95 v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~ 132 (179)
+.++++|+... ..+||+|++|.+....
T Consensus 96 ~~~~~~d~~~~-----------~~~fD~Vi~nPP~~~~ 122 (201)
T d1wy7a1 96 FKVFIGDVSEF-----------NSRVDIVIMNPPFGSQ 122 (201)
T ss_dssp EEEEESCGGGC-----------CCCCSEEEECCCCSSS
T ss_pred ceEEECchhhh-----------CCcCcEEEEcCccccc
Confidence 67788887663 3579999999876443
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.77 E-value=7.7e-09 Score=85.74 Aligned_cols=92 Identities=20% Similarity=0.223 Sum_probs=66.4
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~~ 109 (179)
+|.+|||+|||+|+++..++.. ..+|+++|+++.. .+.+++++++|+++...
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g---------------~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~-- 207 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALG---------------FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLR-- 207 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH---------------EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHH--
T ss_pred CCCeeeccCCCCcHHHHHHHhc---------------CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhh--
Confidence 6889999999999999988753 3689999999831 35689999999988532
Q ss_pred HHHhhcCCCCccEEeeCCCCCCCCCCccc--HHHHHHHHHHHHH
Q 030299 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMD--EFVQSQLILAVSI 151 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~~~~~g~~~~d--~~~q~~L~~~AL~ 151 (179)
.+.. .+++||+|++|.++...+..... ...+.+|+..+++
T Consensus 208 ~~~~--~~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~ 249 (318)
T d1wxxa2 208 RLEK--EGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIK 249 (318)
T ss_dssp HHHH--TTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHH
T ss_pred hhHh--hhcCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHH
Confidence 1211 34689999999887766654433 2334556655655
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.76 E-value=9.4e-09 Score=80.39 Aligned_cols=64 Identities=27% Similarity=0.273 Sum_probs=51.6
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC-CC---------CCCCeeEEeccccchhhHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP-MA---------PIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~-~~---------~~~~v~~i~gDi~~~~~~~ 109 (179)
+++.+|||||||+|..+..++++ ...|+|||+++ |- ...++.++++|+++.+
T Consensus 40 ~~~~~iLDiGcGtG~~~~~l~~~---------------~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~--- 101 (251)
T d1wzna1 40 REVRRVLDLACGTGIPTLELAER---------------GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIA--- 101 (251)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHT---------------TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCC---
T ss_pred CCCCEEEEeCCCCCccchhhccc---------------ceEEEEEeeccccccccccccccccccchheehhhhhcc---
Confidence 56779999999999999999885 36899999998 31 1236899999999875
Q ss_pred HHHhhcCCCCccEEeeCC
Q 030299 110 VVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~ 127 (179)
++ ++||+|++-.
T Consensus 102 -----~~-~~fD~I~~~~ 113 (251)
T d1wzna1 102 -----FK-NEFDAVTMFF 113 (251)
T ss_dssp -----CC-SCEEEEEECS
T ss_pred -----cc-cccchHhhhh
Confidence 33 5899999853
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=98.76 E-value=2.5e-09 Score=84.14 Aligned_cols=63 Identities=24% Similarity=0.222 Sum_probs=50.6
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~ 109 (179)
.++.+|||||||||.++..++++. ..|+|+|+|+.. ...+++++++|+.+.+
T Consensus 36 ~~~~~vLDiGCG~G~~~~~l~~~g---------------~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~--- 97 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGNLTENLCPKF---------------KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLN--- 97 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGS---------------SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCC---
T ss_pred CCCCeEEEEeCcCCHHHHHHHHhC---------------CccEeeccchhhhhhccccccccCccceeeccchhhhc---
Confidence 345799999999999999998862 589999999821 2347999999999865
Q ss_pred HHHhhcCCCCccEEeeC
Q 030299 110 VVIRHFDGCKADLVVCD 126 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD 126 (179)
+ .++||+|+|-
T Consensus 98 -----~-~~~fD~i~~~ 108 (246)
T d1y8ca_ 98 -----I-NRKFDLITCC 108 (246)
T ss_dssp -----C-SCCEEEEEEC
T ss_pred -----c-ccccccccee
Confidence 2 3589999984
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.73 E-value=1.3e-08 Score=84.38 Aligned_cols=96 Identities=19% Similarity=0.136 Sum_probs=66.5
Q ss_pred CCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccch
Q 030299 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNA 105 (179)
Q Consensus 38 ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~ 105 (179)
.+++|.+|||+|||+|+++.+++.. + ..+|+++|+++.. .+ .+++++++|+++.
T Consensus 142 ~~~~g~~VLDl~~g~G~~si~~a~~-g-------------a~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~ 207 (324)
T d2as0a2 142 WVQPGDRVLDVFTYTGGFAIHAAIA-G-------------ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEE 207 (324)
T ss_dssp GCCTTCEEEETTCTTTHHHHHHHHT-T-------------CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH
T ss_pred hcCCCCeeecccCcccchhhhhhhc-C-------------CcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhh
Confidence 4578999999999999999999875 3 3589999999841 12 4678999999875
Q ss_pred hhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHH--HHHHHHHHHHH
Q 030299 106 RTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEF--VQSQLILAVSI 151 (179)
Q Consensus 106 ~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~--~q~~L~~~AL~ 151 (179)
.. .+. ..+.+||+|++|.++...+....... ...+|+..|++
T Consensus 208 ~~--~~~--~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ 251 (324)
T d2as0a2 208 ME--KLQ--KKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLN 251 (324)
T ss_dssp HH--HHH--HTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHT
T ss_pred hH--HHH--hccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 31 111 13468999999988766554433321 23345545543
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=8.4e-09 Score=81.53 Aligned_cols=71 Identities=15% Similarity=0.142 Sum_probs=58.3
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------------CCCCeeEEeccc
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------------PIEGVIQVQGDI 102 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------------~~~~v~~i~gDi 102 (179)
++||++|||+|||+|..|..+++.+++ .++|+++|+++.. ...++.++.+|.
T Consensus 74 l~~g~~VLdiG~GsGy~ta~la~l~~~------------~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~ 141 (224)
T d1i1na_ 74 LHEGAKALDVGSGSGILTACFARMVGC------------TGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDG 141 (224)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCT------------TCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCG
T ss_pred cCCCCeEEEecCCCCHHHHHHHHHhCC------------CceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeec
Confidence 489999999999999999999999874 6899999999820 135788899998
Q ss_pred cchhhHHHHHhhcCCCCccEEeeCCCC
Q 030299 103 TNARTAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 103 ~~~~~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
.+... .+.+||+|++++++
T Consensus 142 ~~~~~--------~~~~fD~I~~~~~~ 160 (224)
T d1i1na_ 142 RMGYA--------EEAPYDAIHVGAAA 160 (224)
T ss_dssp GGCCG--------GGCCEEEEEECSBB
T ss_pred ccccc--------hhhhhhhhhhhcch
Confidence 87542 34689999999864
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.70 E-value=1.4e-08 Score=83.42 Aligned_cols=77 Identities=13% Similarity=-0.016 Sum_probs=56.3
Q ss_pred HHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCC-Cee
Q 030299 29 LLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVI 96 (179)
Q Consensus 29 L~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~-~v~ 96 (179)
+..+.++.+ +++|++|||||||.|+.+.+++++.+ +.|+|+++++.+ .+. .+.
T Consensus 50 ~~~~~~~l~-l~~G~~VLDiGCG~G~~~~~~a~~~g--------------~~v~git~s~~q~~~a~~~~~~~~l~~~v~ 114 (291)
T d1kpia_ 50 RKLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD--------------VNVIGLTLSENQYAHDKAMFDEVDSPRRKE 114 (291)
T ss_dssp HHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC--------------CEEEEEESCHHHHHHHHHHHHHSCCSSCEE
T ss_pred HHHHHHhcC-CCCCCEEEEecCcchHHHHHHHHhcC--------------cceeeccchHHHHHHHHHHHHhhccchhhh
Confidence 333445555 48999999999999999999999875 799999999842 222 455
Q ss_pred EEeccccchhhHHHHHhhcCCCCccEEeeCCCCCC
Q 030299 97 QVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDV 131 (179)
Q Consensus 97 ~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~ 131 (179)
+...|... .+++||.|+|-+....
T Consensus 115 ~~~~d~~~-----------~~~~fD~i~sie~~eH 138 (291)
T d1kpia_ 115 VRIQGWEE-----------FDEPVDRIVSLGAFEH 138 (291)
T ss_dssp EEECCGGG-----------CCCCCSEEEEESCGGG
T ss_pred hhhhcccc-----------cccccceEeechhHHh
Confidence 55555432 3468999999776543
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=98.70 E-value=5.8e-09 Score=81.38 Aligned_cols=64 Identities=14% Similarity=0.210 Sum_probs=50.7
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-------CCCCeeEEeccccchhhHHHHHh
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------PIEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-------~~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
++.+|||||||+|.++..++++ ...|+|+|+++.. ...++.++++|+.+.+
T Consensus 20 ~~~~VLDiGcG~G~~~~~l~~~---------------g~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~------- 77 (225)
T d2p7ia1 20 RPGNLLELGSFKGDFTSRLQEH---------------FNDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQ------- 77 (225)
T ss_dssp CSSCEEEESCTTSHHHHHHTTT---------------CSCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCC-------
T ss_pred CCCcEEEEeCCCcHHHHHHHHc---------------CCeEEEEeCcHHHhhhhhcccccccccccccccccc-------
Confidence 4558999999999999998765 2579999999831 2358999999998864
Q ss_pred hcCCCCccEEeeCCC
Q 030299 114 HFDGCKADLVVCDGA 128 (179)
Q Consensus 114 ~~~~~~~D~VlsD~~ 128 (179)
.+++||+|++...
T Consensus 78 --~~~~fD~I~~~~v 90 (225)
T d2p7ia1 78 --LPRRYDNIVLTHV 90 (225)
T ss_dssp --CSSCEEEEEEESC
T ss_pred --cccccccccccce
Confidence 2468999998654
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=98.70 E-value=2.8e-09 Score=81.59 Aligned_cols=62 Identities=15% Similarity=0.202 Sum_probs=49.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCeeEEeccccchhhHHHHHhhc
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHF 115 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----~~~~v~~i~gDi~~~~~~~~l~~~~ 115 (179)
.++.+|||||||+|.++..+ .+++|+|+++.. .-.++.++++|+.+.+ +
T Consensus 35 ~~~~~vLDiGcG~G~~~~~~-------------------~~~~giD~s~~~~~~a~~~~~~~~~~d~~~l~--------~ 87 (208)
T d1vlma_ 35 LPEGRGVEIGVGTGRFAVPL-------------------KIKIGVEPSERMAEIARKRGVFVLKGTAENLP--------L 87 (208)
T ss_dssp CCSSCEEEETCTTSTTHHHH-------------------TCCEEEESCHHHHHHHHHTTCEEEECBTTBCC--------S
T ss_pred CCCCeEEEECCCCccccccc-------------------ceEEEEeCChhhcccccccccccccccccccc--------c
Confidence 56678999999999987765 246899999831 2258999999999875 4
Q ss_pred CCCCccEEeeCCC
Q 030299 116 DGCKADLVVCDGA 128 (179)
Q Consensus 116 ~~~~~D~VlsD~~ 128 (179)
++++||+|++...
T Consensus 88 ~~~~fD~I~~~~~ 100 (208)
T d1vlma_ 88 KDESFDFALMVTT 100 (208)
T ss_dssp CTTCEEEEEEESC
T ss_pred ccccccccccccc
Confidence 5678999999765
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.69 E-value=1.4e-08 Score=77.80 Aligned_cols=67 Identities=13% Similarity=0.177 Sum_probs=53.4
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC--CCeeEEeccccch
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI--EGVIQVQGDITNA 105 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~--~~v~~i~gDi~~~ 105 (179)
..++.+|||+|||+|.++..+++.. ..|+++|+++.. .+ .+++++++|+.+.
T Consensus 50 ~~~~~~VLDiGcG~G~~~~~la~~~---------------~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~ 114 (194)
T d1dusa_ 50 VDKDDDILDLGCGYGVIGIALADEV---------------KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN 114 (194)
T ss_dssp CCTTCEEEEETCTTSHHHHHHGGGS---------------SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT
T ss_pred cCCCCeEEEEeecCChhHHHHHhhc---------------cccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhh
Confidence 3678999999999999999998753 589999999841 12 3588999999873
Q ss_pred hhHHHHHhhcCCCCccEEeeCCCC
Q 030299 106 RTAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 106 ~~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
+++..||+|+++.+.
T Consensus 115 ---------~~~~~fD~Ii~~~p~ 129 (194)
T d1dusa_ 115 ---------VKDRKYNKIITNPPI 129 (194)
T ss_dssp ---------CTTSCEEEEEECCCS
T ss_pred ---------hccCCceEEEEcccE
Confidence 345789999998653
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.68 E-value=6.8e-08 Score=80.04 Aligned_cols=95 Identities=14% Similarity=0.033 Sum_probs=63.1
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------C--CCCeeEEeccccch
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P--IEGVIQVQGDITNA 105 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~--~~~v~~i~gDi~~~ 105 (179)
+.+|.+|||++||+|+|+.+++.. + ...|++||+++.. . ..+++++++|+++.
T Consensus 142 ~~~g~~VLdlf~~~G~~sl~aa~~-g-------------a~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~ 207 (317)
T d2b78a2 142 SAAGKTVLNLFSYTAAFSVAAAMG-G-------------AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDY 207 (317)
T ss_dssp TTBTCEEEEETCTTTHHHHHHHHT-T-------------BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHH
T ss_pred hhCCCceeecCCCCcHHHHHHHhC-C-------------CceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHH
Confidence 467999999999999999987764 2 3589999999951 1 34789999999875
Q ss_pred hhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccH--HHHHHHHHHHHH
Q 030299 106 RTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDE--FVQSQLILAVSI 151 (179)
Q Consensus 106 ~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~--~~q~~L~~~AL~ 151 (179)
- +++.. .+++||+|++|.+.-......... ....+|+..|++
T Consensus 208 l--~~~~~--~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ 251 (317)
T d2b78a2 208 F--KYARR--HHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLE 251 (317)
T ss_dssp H--HHHHH--TTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHH
T ss_pred H--HHHHh--hcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHH
Confidence 2 22222 246899999996543322222221 223456666665
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=98.68 E-value=5.4e-08 Score=77.73 Aligned_cols=67 Identities=21% Similarity=0.190 Sum_probs=54.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CCCCCeeEEeccccchhhHHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~~~~~v~~i~gDi~~~~~~~~ 110 (179)
.++.+|||+|||+|.+|..++.+.. ..|+++|+++. ...++++++++|+.+.+
T Consensus 92 ~~~~~vLD~GcG~G~~t~~ll~~~~--------------~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~---- 153 (254)
T d1xtpa_ 92 HGTSRALDCGAGIGRITKNLLTKLY--------------ATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETAT---- 153 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHC--------------SEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCC----
T ss_pred CCCCeEEEecccCChhhHHHHhhcC--------------ceEEEEcCCHHHHHhhhccccccccceeEEccccccc----
Confidence 4567999999999999999887753 58999999983 13456889999998865
Q ss_pred HHhhcCCCCccEEeeCCC
Q 030299 111 VIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 111 l~~~~~~~~~D~VlsD~~ 128 (179)
++++.||+|++...
T Consensus 154 ----~~~~~fD~I~~~~v 167 (254)
T d1xtpa_ 154 ----LPPNTYDLIVIQWT 167 (254)
T ss_dssp ----CCSSCEEEEEEESC
T ss_pred ----cCCCccceEEeecc
Confidence 35678999999654
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=98.68 E-value=1.2e-08 Score=82.45 Aligned_cols=70 Identities=20% Similarity=0.138 Sum_probs=55.6
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC----------CCCCCeeEEeccccchhhH
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM----------APIEGVIQVQGDITNARTA 108 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~----------~~~~~v~~i~gDi~~~~~~ 108 (179)
+.++.+|||+|||+|.++..+++..+. ..+|+|+|+++. ....+++++++|+.+.+
T Consensus 25 ~~~~~~ILDiGcG~G~~~~~la~~~~~------------~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~-- 90 (281)
T d2gh1a1 25 ITKPVHIVDYGCGYGYLGLVLMPLLPE------------GSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIE-- 90 (281)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCT------------TCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCC--
T ss_pred cCCcCEEEEecCcCCHHHHHHHHhCCC------------CCEEEEEecchhHhhhhhccccccccccccccccccccc--
Confidence 466789999999999999999887753 578999999983 11237889999998864
Q ss_pred HHHHhhcCCCCccEEeeCCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~ 129 (179)
++ .+||+|++....
T Consensus 91 ------~~-~~fD~v~~~~~l 104 (281)
T d2gh1a1 91 ------LN-DKYDIAICHAFL 104 (281)
T ss_dssp ------CS-SCEEEEEEESCG
T ss_pred ------cc-CCceEEEEehhh
Confidence 33 479999997653
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.66 E-value=3.9e-08 Score=80.76 Aligned_cols=68 Identities=13% Similarity=0.180 Sum_probs=55.1
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------C-CCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------P-IEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~-~~~v~~i~gDi~~~~~~ 108 (179)
.+|++|||||||+|.++..+++. + ..+|+|+|.+++. . ..++.++++|+.+.+
T Consensus 32 ~~~~~VLDiGcG~G~ls~~aa~~-G-------------a~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~-- 95 (316)
T d1oria_ 32 FKDKVVLDVGSGTGILCMFAAKA-G-------------ARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVE-- 95 (316)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT-T-------------CSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCC--
T ss_pred CCcCEEEEEecCCcHHHHHHHHh-C-------------CCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcc--
Confidence 47889999999999999998886 3 2589999999852 1 246999999999975
Q ss_pred HHHHhhcCCCCccEEeeCCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~ 129 (179)
++..++|+|+++...
T Consensus 96 ------~~~~~~D~ivs~~~~ 110 (316)
T d1oria_ 96 ------LPVEKVDIIISEWMG 110 (316)
T ss_dssp ------CSSSCEEEEEECCCB
T ss_pred ------cccceeEEEeeeeee
Confidence 455789999997653
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=2.5e-08 Score=83.09 Aligned_cols=72 Identities=17% Similarity=0.150 Sum_probs=55.8
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------------------CCCCee
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------------------PIEGVI 96 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------------------~~~~v~ 96 (179)
++||++|||+|||+|.+|.++++.+++ .++|+++|+++.. ...|+.
T Consensus 96 i~pG~rVLE~GtGsG~lt~~LAr~vg~------------~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~ 163 (324)
T d2b25a1 96 INPGDTVLEAGSGSGGMSLFLSKAVGS------------QGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVD 163 (324)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCT------------TCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEE
T ss_pred CCCCCEEEEecccccHHHHHHHHHhCC------------CcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhcccccee
Confidence 489999999999999999999999975 7999999998720 125899
Q ss_pred EEeccccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 97 QVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 97 ~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
++.+|+.+... .+.+..||.|+.|++
T Consensus 164 ~~~~di~~~~~------~~~~~~fD~V~LD~p 189 (324)
T d2b25a1 164 FIHKDISGATE------DIKSLTFDAVALDML 189 (324)
T ss_dssp EEESCTTCCC-------------EEEEEECSS
T ss_pred EEecchhhccc------ccCCCCcceEeecCc
Confidence 99999987531 134568999999985
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=98.65 E-value=2.8e-08 Score=77.17 Aligned_cols=68 Identities=19% Similarity=0.103 Sum_probs=51.2
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC------------CCCCCeeEEeccccchh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------------APIEGVIQVQGDITNAR 106 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~------------~~~~~v~~i~gDi~~~~ 106 (179)
++++.+|||||||+|..+..+++.... +..+|+|+|+|+. .....+.+..+|+.+.+
T Consensus 37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~-----------~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~ 105 (225)
T d1im8a_ 37 VTADSNVYDLGCSRGAATLSARRNINQ-----------PNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE 105 (225)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHTCCC-----------SSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCC
T ss_pred cCCCCEEEEeccchhhHHHHHHHhhcC-----------CCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccc
Confidence 588999999999999999999987531 2679999999982 01335667778877643
Q ss_pred hHHHHHhhcCCCCccEEeeCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~ 127 (179)
...+|+|++..
T Consensus 106 ----------~~~~d~i~~~~ 116 (225)
T d1im8a_ 106 ----------IKNASMVILNF 116 (225)
T ss_dssp ----------CCSEEEEEEES
T ss_pred ----------cccceeeEEee
Confidence 34678887754
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.64 E-value=5.1e-08 Score=80.36 Aligned_cols=68 Identities=13% Similarity=0.226 Sum_probs=55.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------C-CCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------P-IEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~-~~~v~~i~gDi~~~~~~ 108 (179)
.+|.+|||||||+|..+..++++ + ..+|+|+|.+++. . ..++.++++|+.+.+
T Consensus 37 ~~~~~VLDlGcGtG~ls~~aa~~-G-------------a~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~-- 100 (328)
T d1g6q1_ 37 FKDKIVLDVGCGTGILSMFAAKH-G-------------AKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVH-- 100 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT-C-------------CSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSC--
T ss_pred CCcCEEEEeCCCCCHHHHHHHHh-C-------------CCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhcc--
Confidence 47889999999999999988875 3 3589999999852 1 347889999999875
Q ss_pred HHHHhhcCCCCccEEeeCCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~ 129 (179)
+++.+||+|++....
T Consensus 101 ------~~~~~~D~i~se~~~ 115 (328)
T d1g6q1_ 101 ------LPFPKVDIIISEWMG 115 (328)
T ss_dssp ------CSSSCEEEEEECCCB
T ss_pred ------CcccceeEEEEEecc
Confidence 456789999998754
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.64 E-value=4.3e-08 Score=75.89 Aligned_cols=84 Identities=17% Similarity=0.124 Sum_probs=64.6
Q ss_pred HhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------C-CCCeeEEe
Q 030299 30 LQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-IEGVIQVQ 99 (179)
Q Consensus 30 ~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~-~~~v~~i~ 99 (179)
.|+.+.... +++..+||++||+||.|..++++.+ .++|+|+|..+.. . -.++.+++
T Consensus 13 ~evi~~l~~-~~~~~~lD~t~G~Gghs~~il~~~~-------------~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~ 78 (192)
T d1m6ya2 13 REVIEFLKP-EDEKIILDCTVGEGGHSRAILEHCP-------------GCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFK 78 (192)
T ss_dssp HHHHHHHCC-CTTCEEEETTCTTSHHHHHHHHHCT-------------TCEEEEEESCHHHHHHHHHHTGGGTTTEEEEE
T ss_pred HHHHHhhCC-CCCCEEEEecCCCcHHHHHHHhcCC-------------CCeEEEeechHHHHHHHHHhhccccccccchh
Confidence 344444443 7889999999999999999999986 5899999999831 2 24689999
Q ss_pred ccccchhhHHHHHhhcCCCCccEEeeCCCCC
Q 030299 100 GDITNARTAEVVIRHFDGCKADLVVCDGAPD 130 (179)
Q Consensus 100 gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~ 130 (179)
+++.+... +...++..+||.|+.|.+.+
T Consensus 79 ~~f~~~~~---~~~~~~~~~vdgIl~DlGvS 106 (192)
T d1m6ya2 79 VSYREADF---LLKTLGIEKVDGILMDLGVS 106 (192)
T ss_dssp CCGGGHHH---HHHHTTCSCEEEEEEECSCC
T ss_pred HHHhhHHH---HHHHcCCCCcceeeeccchh
Confidence 99987643 34445567899999998754
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.63 E-value=2.4e-08 Score=79.14 Aligned_cols=68 Identities=13% Similarity=0.216 Sum_probs=55.5
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CCCCCeeEEeccccchhhHH
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~~~~~v~~i~gDi~~~~~~~ 109 (179)
+++|++|||+|||+|..|..+++.. ++|+++|+.+. ....|+.++.+|...-..
T Consensus 68 l~~g~~VLdIG~GsGy~ta~La~l~---------------~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~-- 130 (224)
T d1vbfa_ 68 LHKGQKVLEIGTGIGYYTALIAEIV---------------DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYE-- 130 (224)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHS---------------SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCG--
T ss_pred hcccceEEEecCCCCHHHHHHHHHh---------------cccccccccHHHHHHHHHHHhcccccccccCchhhcch--
Confidence 4899999999999999999998874 68999999983 235799999999876321
Q ss_pred HHHhhcCCCCccEEeeCCCC
Q 030299 110 VVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~~ 129 (179)
...+||+|++.++.
T Consensus 131 ------~~~pfD~Iiv~~a~ 144 (224)
T d1vbfa_ 131 ------EEKPYDRVVVWATA 144 (224)
T ss_dssp ------GGCCEEEEEESSBB
T ss_pred ------hhhhHHHHHhhcch
Confidence 23679999998764
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=98.63 E-value=1.8e-08 Score=81.28 Aligned_cols=66 Identities=18% Similarity=0.187 Sum_probs=50.4
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhH
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~ 108 (179)
.++|++|||+|||+|..+..+++. + .+|+|+|++|.. .--++.++++|+.+.
T Consensus 118 ~~~g~~VLDiGcGsG~l~i~aa~~-g--------------~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~--- 179 (254)
T d2nxca1 118 LRPGDKVLDLGTGSGVLAIAAEKL-G--------------GKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA--- 179 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT-T--------------CEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH---
T ss_pred cCccCEEEEcccchhHHHHHHHhc-C--------------CEEEEEECChHHHHHHHHHHHHcCCceeEEecccccc---
Confidence 478999999999999999887653 3 689999999942 112456788887653
Q ss_pred HHHHhhcCCCCccEEeeCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~ 128 (179)
++.++||+|+++..
T Consensus 180 ------~~~~~fD~V~ani~ 193 (254)
T d2nxca1 180 ------LPFGPFDLLVANLY 193 (254)
T ss_dssp ------GGGCCEEEEEEECC
T ss_pred ------ccccccchhhhccc
Confidence 23468999999753
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=5.9e-08 Score=75.78 Aligned_cols=69 Identities=12% Similarity=0.006 Sum_probs=54.8
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------------------------
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------------------- 90 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------------------------- 90 (179)
+.++.+|||+|||.|..+.+++++ +..|+|||+|+..
T Consensus 43 ~~~~~rvLd~GCG~G~~a~~LA~~---------------G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~ 107 (229)
T d2bzga1 43 GKSGLRVFFPLCGKAVEMKWFADR---------------GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKS 107 (229)
T ss_dssp TCCSCEEEETTCTTCTHHHHHHHT---------------TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEE
T ss_pred CCCCCEEEEeCCCCcHHHHHHHhC---------------CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeee
Confidence 467889999999999999999986 3699999999821
Q ss_pred CCCCeeEEeccccchhhHHHHHhhcCCCCccEEeeCCCC
Q 030299 91 PIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 91 ~~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
...+++++++|+++... .....||+|+.-+..
T Consensus 108 ~~~~v~~~~~d~~~l~~-------~~~~~fd~i~~~~~l 139 (229)
T d2bzga1 108 SSGNISLYCCSIFDLPR-------TNIGKFDMIWDRGAL 139 (229)
T ss_dssp TTSSEEEEESCGGGGGG-------SCCCCEEEEEESSST
T ss_pred cCCcEEEEEcchhhccc-------cccCceeEEEEEEEE
Confidence 01368899999988653 345689999987654
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=98.61 E-value=2.9e-08 Score=80.92 Aligned_cols=67 Identities=25% Similarity=0.309 Sum_probs=56.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
+.+.+|||||||+|-.+..++...+ ...|+|+|+++.. ...+++++++|+++.
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~p-------------~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~--- 170 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASERP-------------DCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA--- 170 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCT-------------TSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG---
T ss_pred ccccceeeeehhhhHHHHHHHhhCC-------------cceeeeccchhHHHhHHHHHHHHhCcccceeeecccccc---
Confidence 4567899999999999999999876 6899999999842 246899999999885
Q ss_pred HHHHhhcCCCCccEEeeCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~ 128 (179)
+++.+||+|+|+.+
T Consensus 171 ------~~~~~fDlIvsNPP 184 (274)
T d2b3ta1 171 ------LAGQQFAMIVSNPP 184 (274)
T ss_dssp ------GTTCCEEEEEECCC
T ss_pred ------cCCCceeEEEecch
Confidence 24568999999965
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=98.60 E-value=4.9e-08 Score=79.04 Aligned_cols=69 Identities=23% Similarity=0.244 Sum_probs=56.1
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------C-CCCeeEEeccccchh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQVQGDITNAR 106 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~-~~~v~~i~gDi~~~~ 106 (179)
++||++|||+|||+|+.|.++++.+++ .++|+++|+++.. . ..++.+..+|+...
T Consensus 101 i~pG~~VLDiG~GsG~lt~~lA~~~~~------------~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~- 167 (266)
T d1o54a_ 101 VKEGDRIIDTGVGSGAMCAVLARAVGS------------SGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG- 167 (266)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHTTT------------TCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHhCC------------CcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccc-
Confidence 489999999999999999999999864 6899999999831 1 24677777887553
Q ss_pred hHHHHHhhcCCCCccEEeeCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
+....+|.|+.|++
T Consensus 168 --------~~~~~~D~V~~d~p 181 (266)
T d1o54a_ 168 --------FDEKDVDALFLDVP 181 (266)
T ss_dssp --------CSCCSEEEEEECCS
T ss_pred --------ccccceeeeEecCC
Confidence 45578999999975
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=7.1e-08 Score=78.75 Aligned_cols=68 Identities=15% Similarity=0.189 Sum_probs=55.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
.++.+|||||||+|.++..+++.. ..+|+|+|.++.. ...++.++++|+.+..
T Consensus 34 ~~~~~VLDiGcG~G~lsl~aa~~G--------------a~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~-- 97 (311)
T d2fyta1 34 FKDKVVLDVGCGTGILSMFAAKAG--------------AKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVH-- 97 (311)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHTT--------------CSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSC--
T ss_pred CCcCEEEEECCCCCHHHHHHHHcC--------------CCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhc--
Confidence 468899999999999999988863 2589999999941 1357899999999875
Q ss_pred HHHHhhcCCCCccEEeeCCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~ 129 (179)
++.++||+|++....
T Consensus 98 ------~~~~~~D~Ivse~~~ 112 (311)
T d2fyta1 98 ------LPVEKVDVIISEWMG 112 (311)
T ss_dssp ------CSCSCEEEEEECCCB
T ss_pred ------CccccceEEEEeeee
Confidence 355789999997654
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=98.57 E-value=7.7e-08 Score=74.96 Aligned_cols=70 Identities=10% Similarity=0.058 Sum_probs=56.6
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~~~v~~i~gDi~~~~~~ 108 (179)
++...|||||||+|.++..++++.+ +..++|+|+++. ..+.||.++++|+.+..
T Consensus 28 ~~~PlvLeIGcG~G~~~~~lA~~~p-------------~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~-- 92 (204)
T d2fcaa1 28 NDNPIHIEVGTGKGQFISGMAKQNP-------------DINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLT-- 92 (204)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHCT-------------TSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHH--
T ss_pred CCCceEEEEEecCcHHHHHHHHhCC-------------CCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhh--
Confidence 3456899999999999999999976 689999999973 24689999999998742
Q ss_pred HHHHhhcCCCCccEEeeCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~ 128 (179)
..+++..+|.|+...+
T Consensus 93 ----~~~~~~~~d~v~i~fp 108 (204)
T d2fcaa1 93 ----DVFEPGEVKRVYLNFS 108 (204)
T ss_dssp ----HHCCTTSCCEEEEESC
T ss_pred ----cccCchhhhccccccc
Confidence 2367788998887554
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.56 E-value=3.5e-08 Score=79.63 Aligned_cols=70 Identities=19% Similarity=0.139 Sum_probs=56.3
Q ss_pred CCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCC-CeeEEeccccch
Q 030299 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNA 105 (179)
Q Consensus 38 ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~-~v~~i~gDi~~~ 105 (179)
.+++|.+|||+|||+|.++..++.+ + ..+|+|+|++|.. .+. .++++++|+++.
T Consensus 104 ~~~~g~~VlD~~aG~G~~~l~~a~~-~-------------~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~ 169 (260)
T d2frna1 104 VAKPDELVVDMFAGIGHLSLPIAVY-G-------------KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDF 169 (260)
T ss_dssp HCCTTCEEEETTCTTTTTHHHHHHH-T-------------CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTC
T ss_pred hcCCccEEEECcceEcHHHHHHHHh-C-------------CcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHh
Confidence 4589999999999999999999876 3 4699999999941 234 488999999875
Q ss_pred hhHHHHHhhcCCCCccEEeeCCCCC
Q 030299 106 RTAEVVIRHFDGCKADLVVCDGAPD 130 (179)
Q Consensus 106 ~~~~~l~~~~~~~~~D~VlsD~~~~ 130 (179)
. +...||.|+.+..+.
T Consensus 170 ~---------~~~~~D~Ii~~~p~~ 185 (260)
T d2frna1 170 P---------GENIADRILMGYVVR 185 (260)
T ss_dssp C---------CCSCEEEEEECCCSS
T ss_pred c---------cCCCCCEEEECCCCc
Confidence 3 346799999886654
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=1.1e-07 Score=78.64 Aligned_cols=78 Identities=12% Similarity=0.121 Sum_probs=58.5
Q ss_pred HhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-------------------
Q 030299 30 LQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------------- 90 (179)
Q Consensus 30 ~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------------------- 90 (179)
.++.++.+ ++++++|||||||+|..+..++...+ ..+++|||+++..
T Consensus 141 ~~~~~~~~-l~~~~~vlD~GcG~G~~~~~~a~~~~-------------~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g 206 (328)
T d1nw3a_ 141 AQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATN-------------CKHHYGVEKADIPAKYAETMDREFRKWMKWYG 206 (328)
T ss_dssp HHHHHHSC-CCTTCEEEEETCTTSHHHHHHHHHCC-------------CSEEEEEECSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcC-CCCCCEEEEcCCCCCHHHHHHHHHhC-------------CCeEEEEeCCHHHHHHHHHHHHHHHHHhhhcc
Confidence 34445554 48899999999999999999998765 4689999999831
Q ss_pred -CCCCeeEEeccccchhhHHHHHhhcCCCCccEEeeCC
Q 030299 91 -PIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 91 -~~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~ 127 (179)
...++++++||+.+.+..+.+. .+|+|++..
T Consensus 207 ~~~~~i~~~~gd~~~~~~~~~~~------~advi~~~~ 238 (328)
T d1nw3a_ 207 KKHAEYTLERGDFLSEEWRERIA------NTSVIFVNN 238 (328)
T ss_dssp CCCCCEEEEECCTTSHHHHHHHH------HCSEEEECC
T ss_pred ccCCceEEEECcccccccccccC------cceEEEEcc
Confidence 2457999999999876433321 368888753
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=5e-08 Score=76.47 Aligned_cols=76 Identities=12% Similarity=0.012 Sum_probs=56.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC----------CCCCCeeEEeccccchhhHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM----------APIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~----------~~~~~v~~i~gDi~~~~~~~ 109 (179)
.+|.+|||||||+|.++.++++..+ ..|+++|++|. ....++..+.+|..+..
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~~--------------~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--- 114 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAPI--------------DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVA--- 114 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE--------------EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHG---
T ss_pred cCCCeEEEeeccchHHHHHHHHcCC--------------CeEEEeCCCHHHHHHHHHHhhhcccccccccccccccc---
Confidence 6789999999999999999987642 57999999983 12345667777766532
Q ss_pred HHHhhcCCCCccEEeeCCCCCCCCCC
Q 030299 110 VVIRHFDGCKADLVVCDGAPDVTGLH 135 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~~~~~g~~ 135 (179)
..+++.+||.|+.|........+
T Consensus 115 ---~~~~~~~fD~i~fD~~~~~~~~~ 137 (229)
T d1zx0a1 115 ---PTLPDGHFDGILYDTYPLSEETW 137 (229)
T ss_dssp ---GGSCTTCEEEEEECCCCCBGGGT
T ss_pred ---cccccccccceeecccccccccc
Confidence 23567799999999865544433
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=98.50 E-value=2.3e-07 Score=73.56 Aligned_cols=72 Identities=17% Similarity=0.279 Sum_probs=55.1
Q ss_pred HHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------C-CCCeeEEec
Q 030299 32 IDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------P-IEGVIQVQG 100 (179)
Q Consensus 32 id~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~-~~~v~~i~g 100 (179)
+-+.++ +.+..+|||||||+|.++..++++.+ ..+++++|+.++. . ..+++++.+
T Consensus 72 ~~~~~d-~~~~~~VLDvGcG~G~~~~~la~~~p-------------~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~ 137 (253)
T d1tw3a2 72 PAAAYD-WTNVRHVLDVGGGKGGFAAAIARRAP-------------HVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEG 137 (253)
T ss_dssp HHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCT-------------TCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEEC
T ss_pred HHhhcC-CccCCEEEEeCCCCCHHHHHHHHhcc-------------eeEEEEccCHHHHHHHHHHHHHhhcccchhhccc
Confidence 334444 36678999999999999999999976 5899999986531 1 257999999
Q ss_pred cccchhhHHHHHhhcCCCCccEEeeCC
Q 030299 101 DITNARTAEVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 101 Di~~~~~~~~l~~~~~~~~~D~VlsD~ 127 (179)
|+++.. + .++|+|++..
T Consensus 138 D~~~~~---------~-~~~D~v~~~~ 154 (253)
T d1tw3a2 138 DFFEPL---------P-RKADAIILSF 154 (253)
T ss_dssp CTTSCC---------S-SCEEEEEEES
T ss_pred cchhhc---------c-cchhheeecc
Confidence 998742 2 4699998754
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.48 E-value=7e-08 Score=71.44 Aligned_cols=67 Identities=19% Similarity=0.144 Sum_probs=51.9
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchhhH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNARTA 108 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~~~ 108 (179)
+|.+|||||||+|+++..++.+. ..+|+++|.++.. .. ..++++++|++...
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rg--------------a~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l-- 77 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRG--------------MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAI-- 77 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTT--------------CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHH--
T ss_pred CCCeEEEcCCccCHHHHHHHHhC--------------cceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccc--
Confidence 58899999999999999888763 3599999999841 12 35889999987742
Q ss_pred HHHHhhcCCCCccEEeeCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~ 128 (179)
+. ...+||+|++|.+
T Consensus 78 ----~~-~~~~fDiIf~DPP 92 (152)
T d2esra1 78 ----DC-LTGRFDLVFLDPP 92 (152)
T ss_dssp ----HH-BCSCEEEEEECCS
T ss_pred ----cc-cccccceeEechh
Confidence 12 3468999999954
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.44 E-value=1.4e-07 Score=74.18 Aligned_cols=69 Identities=13% Similarity=0.202 Sum_probs=57.3
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCeeEEeccccchhh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNART 107 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~~~v~~i~gDi~~~~~ 107 (179)
+++|++|||||||+|..|-.++..++ +.|+++|..+. ....|+.++++|.++-..
T Consensus 76 l~~g~~VLeIGsGsGY~taila~l~g--------------~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~ 141 (215)
T d1jg1a_ 76 LKPGMNILEVGTGSGWNAALISEIVK--------------TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFP 141 (215)
T ss_dssp CCTTCCEEEECCTTSHHHHHHHHHHC--------------SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG
T ss_pred cCccceEEEecCCCChhHHHHHHhhC--------------ceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCc
Confidence 48899999999999999999998874 67999999973 146899999999987432
Q ss_pred HHHHHhhcCCCCccEEeeCCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
...+||.|++.++.
T Consensus 142 --------~~~pfD~Iiv~~a~ 155 (215)
T d1jg1a_ 142 --------PKAPYDVIIVTAGA 155 (215)
T ss_dssp --------GGCCEEEEEECSBB
T ss_pred --------ccCcceeEEeeccc
Confidence 24689999998764
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.40 E-value=2.8e-07 Score=71.65 Aligned_cols=68 Identities=12% Similarity=0.091 Sum_probs=55.6
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCeeEEeccccchhhHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~~~v~~i~gDi~~~~~~~ 109 (179)
....|||||||.|.++..++++.+ +..++|+|+++. ..+.|+.++.+|+.+..
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~p-------------~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~--- 94 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQNP-------------DINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLT--- 94 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCT-------------TSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGG---
T ss_pred CCCeEEEEeccCCHHHHHHHHHCC-------------CCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHh---
Confidence 445799999999999999999976 689999999983 14689999999998753
Q ss_pred HHHhhcCCCCccEEeeCC
Q 030299 110 VVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~ 127 (179)
..++...+|.|.+.-
T Consensus 95 ---~~~~~~~~~~i~i~f 109 (204)
T d1yzha1 95 ---DYFEDGEIDRLYLNF 109 (204)
T ss_dssp ---GTSCTTCCSEEEEES
T ss_pred ---hhccCCceehhcccc
Confidence 246777899887654
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.37 E-value=1.3e-07 Score=74.55 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=58.0
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------------CCCCeeEEeccc
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------------PIEGVIQVQGDI 102 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------------~~~~v~~i~gDi 102 (179)
++||++|||+|||+|.+|..+++.+++. --....+|+++|+.+.. ...|+.++++|.
T Consensus 78 l~~g~~VLeIGtGsGY~ta~la~l~g~~-------g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~ 150 (223)
T d1r18a_ 78 LKPGARILDVGSGSGYLTACFYRYIKAK-------GVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDG 150 (223)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHS-------CCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCG
T ss_pred cCCCCeEEEecCCCCHHHHHHHHHhhhc-------cCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccc
Confidence 5799999999999999999999987531 00113589999998720 145899999999
Q ss_pred cchhhHHHHHhhcCCCCccEEeeCCCC
Q 030299 103 TNARTAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 103 ~~~~~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
.+... +..+||.|+++++.
T Consensus 151 ~~~~~--------~~~~fD~Iiv~~a~ 169 (223)
T d1r18a_ 151 RKGYP--------PNAPYNAIHVGAAA 169 (223)
T ss_dssp GGCCG--------GGCSEEEEEECSCB
T ss_pred ccccc--------cccceeeEEEEeec
Confidence 87532 34689999999875
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.36 E-value=6.5e-07 Score=68.55 Aligned_cols=91 Identities=14% Similarity=0.150 Sum_probs=68.0
Q ss_pred HHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-------CCCCeeEEecc
Q 030299 29 LLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------PIEGVIQVQGD 101 (179)
Q Consensus 29 L~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-------~~~~v~~i~gD 101 (179)
|.|+.+.+. .++|..++|..+|+||+|..++++ .++|+|+|..|.. ..+++.+++++
T Consensus 7 l~Evl~~l~-~~~g~~~vD~T~G~GGhs~~iL~~---------------~~~viaiD~D~~ai~~a~~~~~~~~~~~~~~ 70 (182)
T d1wg8a2 7 YQEALDLLA-VRPGGVYVDATLGGAGHARGILER---------------GGRVIGLDQDPEAVARAKGLHLPGLTVVQGN 70 (182)
T ss_dssp HHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT---------------TCEEEEEESCHHHHHHHHHTCCTTEEEEESC
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCcHHHHHHhcc---------------cCcEEEEhhhhhHHHHHhhccccceeEeehH
Confidence 345554444 378999999999999999999885 4799999999952 24689999999
Q ss_pred ccchhhHHHHHhhcCCCCccEEeeCCCCCCCCCCccc
Q 030299 102 ITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMD 138 (179)
Q Consensus 102 i~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d 138 (179)
..+.+. +...+....+|.|+.|.+.+....-+.+
T Consensus 71 f~~~~~---~l~~~~~~~vdgIl~DLGvSs~qld~~~ 104 (182)
T d1wg8a2 71 FRHLKR---HLAALGVERVDGILADLGVSSFHLDDPS 104 (182)
T ss_dssp GGGHHH---HHHHTTCSCEEEEEEECSCCHHHHHCGG
T ss_pred HHHHHH---HHHHcCCCccCEEEEEccCCHHHhhcch
Confidence 988643 3333455689999999987665544433
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.31 E-value=5.6e-07 Score=74.37 Aligned_cols=75 Identities=17% Similarity=0.141 Sum_probs=55.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC--CCeeEEeccccchh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI--EGVIQVQGDITNAR 106 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~--~~v~~i~gDi~~~~ 106 (179)
.++.+||||+||+|+++.+++.. ..+|++||.++.. .+ ..++++++|+++.-
T Consensus 131 ~~~~rVLdlf~~tG~~sl~aa~~---------------GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l 195 (309)
T d2igta1 131 DRPLKVLNLFGYTGVASLVAAAA---------------GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFI 195 (309)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHT---------------TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHH
T ss_pred cCCCeEEEecCCCcHHHHHHHhC---------------CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhH
Confidence 56889999999999999998864 3589999999831 12 35899999998852
Q ss_pred hHHHHHhhcCCCCccEEeeCCCCCCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGAPDVTG 133 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~~~~~g 133 (179)
++... .++.||+|++|.+.-..+
T Consensus 196 --~~~~~--~~~~fD~IilDPP~f~~~ 218 (309)
T d2igta1 196 --QREER--RGSTYDIILTDPPKFGRG 218 (309)
T ss_dssp --HHHHH--HTCCBSEEEECCCSEEEC
T ss_pred --HHHhh--cCCCCCEEEECCCccccc
Confidence 11111 246899999997644333
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=5.2e-07 Score=71.86 Aligned_cols=82 Identities=11% Similarity=0.024 Sum_probs=46.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CC---CCCeeEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------AP---IEGVIQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~~---~~~v~~i~gDi~~~~~ 107 (179)
++..+|||||||+|.++..++..+... -.+....++|+|+++. .. .+++.+.-.+.+..+.
T Consensus 39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~-------~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (280)
T d1jqea_ 39 KSEIKILSIGGGAGEIDLQILSKVQAQ-------YPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEY 111 (280)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHH-------STTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhhh-------ccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhh
Confidence 445589999999999999887754210 0001346899999972 11 2344332222221111
Q ss_pred HHHHHhhcCCCCccEEeeCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~ 128 (179)
........++.+||+|++-.+
T Consensus 112 ~~~~~~~~~~~~fD~I~~~~~ 132 (280)
T d1jqea_ 112 QSRMLEKKELQKWDFIHMIQM 132 (280)
T ss_dssp HHHHTTSSSCCCEEEEEEESC
T ss_pred cchhcccCCCCceeEEEEccc
Confidence 111222345678999999654
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.30 E-value=2.7e-07 Score=74.26 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=30.1
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~ 88 (179)
+++.+|||||||+|..+..++++ +..|+|+|+|+
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~---------------g~~v~gvD~S~ 88 (292)
T d1xvaa_ 55 HGCHRVLDVACGTGVDSIMLVEE---------------GFSVTSVDASD 88 (292)
T ss_dssp TTCCEEEESSCTTSHHHHHHHHT---------------TCEEEEEESCH
T ss_pred cCCCEEEEecCCCcHHHHHHHHc---------------CCeeeeccCch
Confidence 45779999999999999999886 25899999998
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.27 E-value=5e-07 Score=72.23 Aligned_cols=72 Identities=14% Similarity=0.174 Sum_probs=57.8
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CCCCeeEEeccccchhhHH
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~~~~v~~i~gDi~~~~~~~ 109 (179)
+.++++|||||||+|..|..|+++. .+|+|||+.+.. ..++++++.+|+.+.+
T Consensus 27 ~~~~d~VLEIGpG~G~LT~~L~~~~---------------~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~--- 88 (245)
T d1yuba_ 27 LKETDTVYEIGTGKGHLTTKLAKIS---------------KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQ--- 88 (245)
T ss_dssp CCSSEEEEECSCCCSSCSHHHHHHS---------------SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTT---
T ss_pred CCCCCeEEEECCCccHHHHHHHhhc---------------CceeEeeecccchhhhhhhhhhccchhhhhhhhhccc---
Confidence 3688999999999999999999873 589999999841 2368999999999875
Q ss_pred HHHhhcCCCCccEEeeCCCCCCCC
Q 030299 110 VVIRHFDGCKADLVVCDGAPDVTG 133 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~~~~~g 133 (179)
++....+.|+++.+-+.+.
T Consensus 89 -----~~~~~~~~vv~NLPY~Ist 107 (245)
T d1yuba_ 89 -----FPNKQRYKIVGNIPYHLST 107 (245)
T ss_dssp -----CCCSSEEEEEEECCSSSCH
T ss_pred -----cccceeeeEeeeeehhhhH
Confidence 3455678889988765543
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.23 E-value=1.2e-06 Score=69.54 Aligned_cols=70 Identities=10% Similarity=0.222 Sum_probs=55.1
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CCCCCeeEEeccccchhhHH
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~~~~~v~~i~gDi~~~~~~~ 109 (179)
++++++|||+|||+|..|..++++. .+|+|||+.+. ...+|++++++|+.+.+
T Consensus 19 ~~~~d~VlEIGpG~G~LT~~Ll~~~---------------~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~--- 80 (235)
T d1qama_ 19 LNEHDNIFEIGSGKGHFTLELVQRC---------------NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFK--- 80 (235)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHS---------------SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCC---
T ss_pred CCCCCeEEEECCCchHHHHHHHhCc---------------CceEEEeeccchHHHHHHHhhcccchhhhhhhhhhcc---
Confidence 3689999999999999999999873 58999999983 23578999999999865
Q ss_pred HHHhhcCCCCccEEeeCCCCCC
Q 030299 110 VVIRHFDGCKADLVVCDGAPDV 131 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~~~~ 131 (179)
++......|+++.+-+.
T Consensus 81 -----~~~~~~~~vv~NLPYnI 97 (235)
T d1qama_ 81 -----FPKNQSYKIFGNIPYNI 97 (235)
T ss_dssp -----CCSSCCCEEEEECCGGG
T ss_pred -----ccccccceeeeeehhhh
Confidence 23334456778876544
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.23 E-value=4.4e-07 Score=68.39 Aligned_cols=70 Identities=13% Similarity=0.108 Sum_probs=47.3
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCC-CeeEEeccccchh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNAR 106 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~-~v~~i~gDi~~~~ 106 (179)
+.+|.+|||+|||+|.++..++.+ ...|+++|.++.. ... .+....+|.....
T Consensus 39 ~~~g~~vLDl~~G~G~~~i~a~~~---------------ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~ 103 (171)
T d1ws6a1 39 YPRRGRFLDPFAGSGAVGLEAASE---------------GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPE 103 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHT---------------TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHH
T ss_pred ccCCCeEEEeccccchhhhhhhhc---------------cchhhhcccCHHHHhhhhHHHHhhccccceeeeehhccccc
Confidence 367889999999999999988776 3589999999942 121 2333344433221
Q ss_pred hHHHHHhhcCCCCccEEeeCCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
. .....+||+|++|.+.
T Consensus 104 ~------~~~~~~fD~If~DPPY 120 (171)
T d1ws6a1 104 A------KAQGERFTVAFMAPPY 120 (171)
T ss_dssp H------HHTTCCEEEEEECCCT
T ss_pred c------cccCCccceeEEcccc
Confidence 1 1245689999999653
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.16 E-value=1.1e-05 Score=61.09 Aligned_cols=72 Identities=15% Similarity=0.131 Sum_probs=55.7
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--CCCCeeEEeccccchhhHHHHHhhcCC
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--PIEGVIQVQGDITNARTAEVVIRHFDG 117 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--~~~~v~~i~gDi~~~~~~~~l~~~~~~ 117 (179)
+++.+|||.|||+|+|+..+.++.+. ...++|+|+.+.. .......+.+|..... ..
T Consensus 18 ~~~~~IlDp~~G~G~fl~~~~~~~~~------------~~~i~g~ei~~~~~~~~~~~~~~~~~~~~~~---------~~ 76 (223)
T d2ih2a1 18 PRGGRVLEPACAHGPFLRAFREAHGT------------AYRFVGVEIDPKALDLPPWAEGILADFLLWE---------PG 76 (223)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHHCS------------CSEEEEEESCTTTCCCCTTEEEEESCGGGCC---------CS
T ss_pred CCcCEEEECCCchHHHHHHHHHhccc------------cceEEeeecCHHHHhhcccceeeeeehhccc---------cc
Confidence 67889999999999999998888763 5789999999964 2345567788877653 24
Q ss_pred CCccEEeeCCCCCCC
Q 030299 118 CKADLVVCDGAPDVT 132 (179)
Q Consensus 118 ~~~D~VlsD~~~~~~ 132 (179)
..||+|+++.+....
T Consensus 77 ~~fd~ii~npP~~~~ 91 (223)
T d2ih2a1 77 EAFDLILGNPPYGIV 91 (223)
T ss_dssp SCEEEEEECCCCCCB
T ss_pred cccceecccCccccc
Confidence 589999999765443
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.12 E-value=1.6e-06 Score=65.82 Aligned_cols=67 Identities=12% Similarity=0.106 Sum_probs=52.6
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~~ 109 (179)
.+.+||||+||+|.++..++.|. ...|++||.++.. ...++.++.+|+.+..
T Consensus 43 ~~~~vLDlfaGsG~~giealsrG--------------a~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l--- 105 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRY--------------AAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFL--- 105 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT--------------CSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHH---
T ss_pred chhhhhhhhccccceeeeEEecC--------------cceeEEEEEeechhhHHHHHHhhccccceeeeeecccccc---
Confidence 56799999999999999988874 3689999999831 2467888899887642
Q ss_pred HHHhhcCCCCccEEeeCCC
Q 030299 110 VVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~ 128 (179)
+. .+.+||+|++|.+
T Consensus 106 ---~~-~~~~fDlIf~DPP 120 (183)
T d2fpoa1 106 ---AQ-KGTPHNIVFVDPP 120 (183)
T ss_dssp ---SS-CCCCEEEEEECCS
T ss_pred ---cc-cccccCEEEEcCc
Confidence 11 3568999999954
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=98.07 E-value=6.9e-06 Score=65.17 Aligned_cols=72 Identities=17% Similarity=0.236 Sum_probs=53.9
Q ss_pred HHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------C-CCCeeEEec
Q 030299 32 IDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------P-IEGVIQVQG 100 (179)
Q Consensus 32 id~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~-~~~v~~i~g 100 (179)
+-+.++ +.+..+|||||||+|.++..++++.+ ..+++++|+.++. + ...++++.+
T Consensus 73 ~~~~~d-~~~~~~vlDvG~G~G~~~~~l~~~~P-------------~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~ 138 (256)
T d1qzza2 73 PADAYD-WSAVRHVLDVGGGNGGMLAAIALRAP-------------HLRGTLVELAGPAERARRRFADAGLADRVTVAEG 138 (256)
T ss_dssp HHHTSC-CTTCCEEEEETCTTSHHHHHHHHHCT-------------TCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEEC
T ss_pred HHhcCC-CccCCEEEEECCCCCHHHHHHHHhhc-------------CcEEEEecChHHHHHHHHHHhhcCCcceeeeeee
Confidence 334444 36678999999999999999999976 5899999985431 1 246888899
Q ss_pred cccchhhHHHHHhhcCCCCccEEeeCC
Q 030299 101 DITNARTAEVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 101 Di~~~~~~~~l~~~~~~~~~D~VlsD~ 127 (179)
|+++. .+ .++|+|++-.
T Consensus 139 d~~~~---------~p-~~~D~v~~~~ 155 (256)
T d1qzza2 139 DFFKP---------LP-VTADVVLLSF 155 (256)
T ss_dssp CTTSC---------CS-CCEEEEEEES
T ss_pred ecccc---------cc-ccchhhhccc
Confidence 99874 23 3689998754
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.03 E-value=3.7e-06 Score=63.88 Aligned_cols=71 Identities=18% Similarity=0.096 Sum_probs=53.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------------CCCCeeEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PIEGVIQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------------~~~~v~~i~gDi~~~~~ 107 (179)
-+|.+||||+||+|+++..++.+- ...|++||.++.. ...+++++++|+++.-
T Consensus 40 ~~~~~vLDlfaGsG~~g~ea~srG--------------a~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l- 104 (182)
T d2fhpa1 40 FDGGMALDLYSGSGGLAIEAVSRG--------------MDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRAL- 104 (182)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHTT--------------CSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHH-
T ss_pred cCCCEEEEcccccccccceeeecc--------------hhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhh-
Confidence 368899999999999999998874 3589999999831 1237888999998742
Q ss_pred HHHHHhhcCCCCccEEeeCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~ 128 (179)
+++.. .+.+||+|+.|.+
T Consensus 105 -~~~~~--~~~~fDlIflDPP 122 (182)
T d2fhpa1 105 -EQFYE--EKLQFDLVLLDPP 122 (182)
T ss_dssp -HHHHH--TTCCEEEEEECCC
T ss_pred -hhhcc--cCCCcceEEechh
Confidence 22221 3458999999975
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.01 E-value=3.3e-06 Score=71.99 Aligned_cols=45 Identities=9% Similarity=0.076 Sum_probs=38.0
Q ss_pred HhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC
Q 030299 30 LQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (179)
Q Consensus 30 ~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~ 88 (179)
.++.++.+ +++|++|||||||+|..+..++...+ ..+|+|||+++
T Consensus 206 ~~Il~~l~-Lkpgd~fLDLGCG~G~~vl~aA~~~g-------------~~~v~GIDiS~ 250 (406)
T d1u2za_ 206 SDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECG-------------CALSFGCEIMD 250 (406)
T ss_dssp HHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHC-------------CSEEEEEECCH
T ss_pred HHHHHHhC-CCCCCEEEeCCCCCcHHHHHHHHHcC-------------CCeEEEEeCCH
Confidence 34455555 48999999999999999999999986 36899999998
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.83 E-value=1.1e-05 Score=62.74 Aligned_cols=74 Identities=18% Similarity=0.192 Sum_probs=57.5
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchhhH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNARTA 108 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~~~ 108 (179)
+..+|||+|+|.|..|.++++.++. +++|+++|+++.. .+ ..|+++.||..+. .
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~~------------~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~--l 121 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQP------------GARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDL--I 121 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCCT------------TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH--G
T ss_pred CCCEEEEEccCchhHHHHHHHhCCC------------ccEEEEEeccHHHHHHHHHHHHHcCCCccceeeecccccc--c
Confidence 4579999999999999999988753 6899999999831 22 3589999998874 2
Q ss_pred HHHHhhcCCCCccEEeeCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~ 128 (179)
.++.+.+....||+|+.|+.
T Consensus 122 ~~l~~~~~~~~~D~ifiD~~ 141 (214)
T d2cl5a1 122 PQLKKKYDVDTLDMVFLDHW 141 (214)
T ss_dssp GGHHHHSCCCCEEEEEECSC
T ss_pred cchhhcccccccceeeeccc
Confidence 33444455568999999964
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=97.79 E-value=1.4e-05 Score=65.68 Aligned_cols=74 Identities=19% Similarity=0.269 Sum_probs=56.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
.++++||||.||.|.+|..|+++. .+|+|+|.++.. .+.|++|+.+|..+....
T Consensus 211 ~~~~~vlDLycG~G~fsl~La~~~---------------~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~ 275 (358)
T d1uwva2 211 QPEDRVLDLFCGMGNFTLPLATQA---------------ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTK 275 (358)
T ss_dssp CTTCEEEEESCTTTTTHHHHHTTS---------------SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSS
T ss_pred CCCceEEEecccccccchhccccc---------------cEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhh
Confidence 578899999999999999998763 689999999841 467999999998774321
Q ss_pred HHHHhhcCCCCccEEeeCCCCCCCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGAPDVTGL 134 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~~~~g~ 134 (179)
. ......+|+|+.|. +-+|.
T Consensus 276 ~----~~~~~~~d~vilDP--PR~G~ 295 (358)
T d1uwva2 276 Q----PWAKNGFDKVLLDP--ARAGA 295 (358)
T ss_dssp S----GGGTTCCSEEEECC--CTTCC
T ss_pred h----hhhhccCceEEeCC--CCccH
Confidence 0 01235789999985 45664
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.78 E-value=3.8e-05 Score=59.91 Aligned_cols=76 Identities=13% Similarity=0.069 Sum_probs=58.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~~ 107 (179)
.+.++|||||++.|..|.++++.++. +++|+++|..+.. .. ..++++.||..+.-
T Consensus 58 ~~~k~vLEiGt~~GyStl~~a~al~~------------~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l- 124 (219)
T d2avda1 58 IQAKKALDLGTFTGYSALALALALPA------------DGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETL- 124 (219)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCT------------TCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHH-
T ss_pred cCCCeEEEEechhhHHHHHHHHhCCC------------CceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcc-
Confidence 45679999999999999999998864 6899999999941 22 45888899987642
Q ss_pred HHHHHhhcCCCCccEEeeCCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
.++.......+||+|+.|+..
T Consensus 125 -~~~~~~~~~~~fD~ifiD~dk 145 (219)
T d2avda1 125 -DELLAAGEAGTFDVAVVDADK 145 (219)
T ss_dssp -HHHHHTTCTTCEEEEEECSCS
T ss_pred -hhhhhhcccCCccEEEEeCCH
Confidence 233333345689999999754
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.64 E-value=4e-05 Score=60.76 Aligned_cols=75 Identities=12% Similarity=0.135 Sum_probs=50.8
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCC-CeeEEeccccchhhHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNARTAE 109 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~-~v~~i~gDi~~~~~~~ 109 (179)
.-++||||||+|-.+..++.+.+ +..|+|+|+++.. .+. .+.+++.+..+.-. .
T Consensus 62 ~~~~LDiGtGsg~I~~~l~~~~~-------------~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~-~ 127 (250)
T d2h00a1 62 LRRGIDIGTGASCIYPLLGATLN-------------GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLM-D 127 (250)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHH-------------CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSST-T
T ss_pred cceEEEeCCCchHHHHHHHHhCC-------------CccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhh-h
Confidence 45899999999999999999986 5899999999841 222 35556554433210 0
Q ss_pred HHHhhcCCCCccEEeeCCCCCC
Q 030299 110 VVIRHFDGCKADLVVCDGAPDV 131 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~~~~ 131 (179)
......+.+||+|+|+.+.-.
T Consensus 128 -~~~~~~~~~fD~ivsNPPY~~ 148 (250)
T d2h00a1 128 -ALKEESEIIYDFCMCNPPFFA 148 (250)
T ss_dssp -TSTTCCSCCBSEEEECCCCC-
T ss_pred -hhhhcccCceeEEEecCcccc
Confidence 001123467999999986543
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.64 E-value=9.5e-05 Score=58.32 Aligned_cols=65 Identities=25% Similarity=0.425 Sum_probs=51.1
Q ss_pred cHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC----CCCCCeeEEecccc
Q 030299 28 KLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM----APIEGVIQVQGDIT 103 (179)
Q Consensus 28 KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~----~~~~~v~~i~gDi~ 103 (179)
...++-+.+..+....+|||||||+|.++..++++.| ..+++.+|+-+. ....+++++.+|++
T Consensus 68 ~~~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P-------------~l~~~v~Dlp~vi~~~~~~~ri~~~~gd~~ 134 (244)
T d1fp1d2 68 EMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYP-------------LIKGINFDLPQVIENAPPLSGIEHVGGDMF 134 (244)
T ss_dssp HHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCT-------------TCEEEEEECHHHHTTCCCCTTEEEEECCTT
T ss_pred HHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCC-------------CCeEEEecchhhhhccCCCCCeEEecCCcc
Confidence 3344555666567778999999999999999999986 678999997652 23468999999998
Q ss_pred ch
Q 030299 104 NA 105 (179)
Q Consensus 104 ~~ 105 (179)
+.
T Consensus 135 ~~ 136 (244)
T d1fp1d2 135 AS 136 (244)
T ss_dssp TC
T ss_pred cc
Confidence 74
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.59 E-value=3.4e-06 Score=65.52 Aligned_cols=36 Identities=11% Similarity=0.129 Sum_probs=29.7
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~ 89 (179)
.+|.+|||||||||.++..++... ...|+|+|+++.
T Consensus 50 ~~g~~vLDlGcG~G~~~~~~~~~~--------------~~~v~giD~S~~ 85 (257)
T d2a14a1 50 LQGDTLIDIGSGPTIYQVLAACDS--------------FQDITLSDFTDR 85 (257)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGT--------------EEEEEEEESCHH
T ss_pred CCCCEEEEECCCCCHhHHHHhccc--------------cCcEEEecCCHH
Confidence 568899999999999998776653 247999999983
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.58 E-value=0.00013 Score=57.13 Aligned_cols=62 Identities=27% Similarity=0.360 Sum_probs=49.0
Q ss_pred hHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCeeEEeccccch
Q 030299 31 QIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNA 105 (179)
Q Consensus 31 eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----~~~~v~~i~gDi~~~ 105 (179)
.+.+.+....+..+|||||||+|.++..++++.| +.+++.+|+.+.. ..++++++.+|+++.
T Consensus 71 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P-------------~l~~~v~Dlp~vi~~~~~~~r~~~~~~d~~~~ 136 (243)
T d1kyza2 71 KILETYTGFEGLKSLVDVGGGTGAVINTIVSKYP-------------TIKGINFDLPHVIEDAPSYPGVEHVGGDMFVS 136 (243)
T ss_dssp HHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCT-------------TSEEEEEECTTTTTTCCCCTTEEEEECCTTTC
T ss_pred HHHHhcccccCCcEEEEecCCCcHHHHHHHHHCC-------------CCeEEEcccHHhhhhcccCCceEEeccccccc
Confidence 3344455556668999999999999999999986 6899999997642 246899999999874
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=97.46 E-value=4.3e-05 Score=61.99 Aligned_cols=74 Identities=11% Similarity=0.026 Sum_probs=52.6
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~ 109 (179)
+++.+|+|.|||+|++...+.+++... ......++|+|+++.. ...+....++|.....
T Consensus 116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~--------~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--- 184 (328)
T d2f8la1 116 KKNVSILDPACGTANLLTTVINQLELK--------GDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANL--- 184 (328)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTT--------SSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCC---
T ss_pred CCCCEEEeCCCCcchhHHHHHHHHHhc--------cCccceEEEecccHHHHHHHHHHHHHhhhhhhhhcccccccc---
Confidence 567899999999999999998876420 1123479999999831 1234556677766542
Q ss_pred HHHhhcCCCCccEEeeCCCCC
Q 030299 110 VVIRHFDGCKADLVVCDGAPD 130 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~~~ 130 (179)
...+||+|+++.+..
T Consensus 185 ------~~~~fD~vi~NPPy~ 199 (328)
T d2f8la1 185 ------LVDPVDVVISDLPVG 199 (328)
T ss_dssp ------CCCCEEEEEEECCCS
T ss_pred ------ccccccccccCCCCC
Confidence 346899999997653
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.44 E-value=9.2e-05 Score=58.90 Aligned_cols=77 Identities=10% Similarity=0.075 Sum_probs=55.3
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CCCCCeeEEeccccchhhHH
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~~~~~v~~i~gDi~~~~~~~ 109 (179)
+.+++.||++|||+|..|..++++. .+|+|+|+.+. ...++++.+.+|+.+....
T Consensus 19 ~~~~d~vlEIGpG~G~LT~~Ll~~~---------------~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~~~- 82 (252)
T d1qyra_ 19 PQKGQAMVEIGPGLAALTEPVGERL---------------DQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFG- 82 (252)
T ss_dssp CCTTCCEEEECCTTTTTHHHHHTTC---------------SCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHH-
T ss_pred CCCCCEEEEECCCchHHHHHHHccC---------------CceEEEEeccchhHHHHHHhhhccchhHHhhhhhhhccc-
Confidence 3678999999999999999999863 57999999983 1236899999999876432
Q ss_pred HHHhhcCCCCccEEeeCCCCCCCC
Q 030299 110 VVIRHFDGCKADLVVCDGAPDVTG 133 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~~~~~g 133 (179)
++.+.. + ..-.|+++.+-+.+.
T Consensus 83 ~~~~~~-~-~~~~vvgNlPY~Iss 104 (252)
T d1qyra_ 83 ELAEKM-G-QPLRVFGNLPYNIST 104 (252)
T ss_dssp HHHHHH-T-SCEEEEEECCTTTHH
T ss_pred cccccc-C-CCeEEEecchHHHHH
Confidence 222222 2 234677887765543
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.43 E-value=0.00032 Score=55.04 Aligned_cols=74 Identities=20% Similarity=0.190 Sum_probs=54.7
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CCCCeeEEeccccchhhHHHHHhhc
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRHF 115 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~~~v~~i~gDi~~~~~~~~l~~~~ 115 (179)
..+||++|.+.|+-+.+++..+.. .+..++|+++|+.+.. ...++++++||.++.++.+. +
T Consensus 81 Pk~ILEIGv~~GgS~~~~a~~l~~---------~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~----l 147 (232)
T d2bm8a1 81 PRTIVELGVYNGGSLAWFRDLTKI---------MGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEH----L 147 (232)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHH---------TTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGG----G
T ss_pred CCEEEEECCCCchHHHHHHHHHHh---------cCCCceEEecCcChhhhhhhhccccceeeeecccccHHHHHH----H
Confidence 559999999999988777654410 0126899999998632 35789999999998876433 4
Q ss_pred CCCCccEEeeCCC
Q 030299 116 DGCKADLVVCDGA 128 (179)
Q Consensus 116 ~~~~~D~VlsD~~ 128 (179)
.+..+|+|+.|++
T Consensus 148 ~~~~~dlIfID~~ 160 (232)
T d2bm8a1 148 REMAHPLIFIDNA 160 (232)
T ss_dssp SSSCSSEEEEESS
T ss_pred HhcCCCEEEEcCC
Confidence 4557899999974
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=97.35 E-value=0.00029 Score=56.56 Aligned_cols=66 Identities=12% Similarity=0.263 Sum_probs=49.2
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCC-CeeEEeccccchhhHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNARTAE 109 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~-~v~~i~gDi~~~~~~~ 109 (179)
..+|+|+|||.|..+..+++ .+ ...|+|+|+++.. ... .+.+..+|+.+....
T Consensus 111 ~~~vld~g~GsG~i~~~la~-~~-------------~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~- 175 (271)
T d1nv8a_ 111 IKTVADIGTGSGAIGVSVAK-FS-------------DAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKE- 175 (271)
T ss_dssp CCEEEEESCTTSHHHHHHHH-HS-------------SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGG-
T ss_pred ccEEEEeeeeeehhhhhhhh-cc-------------cceeeechhhhhHHHHHHHHHHHcCCCceeEEeeccccccccc-
Confidence 45899999999999988875 44 5899999999942 123 355668888875321
Q ss_pred HHHhhcCCCCccEEeeCCC
Q 030299 110 VVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~ 128 (179)
..++||+|+|+.+
T Consensus 176 ------~~~~fDlIVsNPP 188 (271)
T d1nv8a_ 176 ------KFASIEMILSNPP 188 (271)
T ss_dssp ------GTTTCCEEEECCC
T ss_pred ------ccCcccEEEEccc
Confidence 1258999999975
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.32 E-value=0.00015 Score=58.50 Aligned_cols=66 Identities=18% Similarity=0.207 Sum_probs=52.1
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CC---CCCeeEEeccccchh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------AP---IEGVIQVQGDITNAR 106 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~~---~~~v~~i~gDi~~~~ 106 (179)
+.+++.||++|+|+|..|..++++. .+|+|+++.+. .. ..+++.+.+|+...+
T Consensus 19 ~~~~d~VlEIGPG~G~LT~~Ll~~~---------------~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~ 83 (278)
T d1zq9a1 19 LRPTDVVLEVGPGTGNMTVKLLEKA---------------KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTD 83 (278)
T ss_dssp CCTTCEEEEECCTTSTTHHHHHHHS---------------SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSC
T ss_pred CCCCCEEEEECCCchHHHHHHHhcC---------------CcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhh
Confidence 3678999999999999999999873 58999999983 11 247999999998764
Q ss_pred hHHHHHhhcCCCCccEEeeCCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
+ ...+.|+++.+-
T Consensus 84 --------~--~~~~~vV~NLPY 96 (278)
T d1zq9a1 84 --------L--PFFDTCVANLPY 96 (278)
T ss_dssp --------C--CCCSEEEEECCG
T ss_pred --------h--hhhhhhhcchHH
Confidence 2 245778888764
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.28 E-value=4.3e-05 Score=60.39 Aligned_cols=35 Identities=11% Similarity=0.188 Sum_probs=28.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~ 88 (179)
.+|.+|||||||||.++...+... ...|+|+|+++
T Consensus 53 ~~g~~vLDiGcG~g~~~~~~~~~~--------------~~~v~~~D~S~ 87 (263)
T d2g72a1 53 VSGRTLIDIGSGPTVYQLLSACSH--------------FEDITMTDFLE 87 (263)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGG--------------CSEEEEECSCH
T ss_pred CCCcEEEEeccCCCHHHHHHhccc--------------CCeEEEEeCCH
Confidence 357899999999999887665543 25899999998
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=97.25 E-value=0.00016 Score=54.26 Aligned_cols=70 Identities=13% Similarity=0.036 Sum_probs=49.3
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC--CCeeEEeccccchhh
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI--EGVIQVQGDITNART 107 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~--~~v~~i~gDi~~~~~ 107 (179)
.+.+||||+||+|..+..++.|- ...|+.||.++-. .. .....+..|+.+...
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRG--------------A~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~ 108 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQ--------------AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLK 108 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT--------------CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTT
T ss_pred ccceEeecccCccceeeeeeeec--------------ceeeEEeecccchhhhHhhHHhhhccccccccccccccccccc
Confidence 57799999999999999999884 3699999999831 11 234555666554321
Q ss_pred HHHHHhhcCCCCccEEeeCCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
......+||+|+.|.+-
T Consensus 109 -----~~~~~~~fDlIFlDPPY 125 (183)
T d2ifta1 109 -----QPQNQPHFDVVFLDPPF 125 (183)
T ss_dssp -----SCCSSCCEEEEEECCCS
T ss_pred -----ccccCCcccEEEechhH
Confidence 11224579999999764
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.17 E-value=0.00037 Score=54.76 Aligned_cols=63 Identities=17% Similarity=0.314 Sum_probs=49.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC----CCCCCeeEEeccccchhhHHHHHhhc
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM----APIEGVIQVQGDITNARTAEVVIRHF 115 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~----~~~~~v~~i~gDi~~~~~~~~l~~~~ 115 (179)
....+|||+|+|+|.++..++++.+ ..+++..|+.+. ....+++++.+|+++..
T Consensus 79 ~~~~~vvDvGGG~G~~~~~l~~~~P-------------~l~~~v~Dlp~vi~~~~~~~rv~~~~gD~f~~~--------- 136 (244)
T d1fp2a2 79 DGLESIVDVGGGTGTTAKIICETFP-------------KLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSI--------- 136 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCT-------------TCEEEEEECHHHHTTCCCBTTEEEEECCTTTCC---------
T ss_pred cCceEEEEecCCccHHHHHHHHhCC-------------CCeEEEecCHHHHHhCcccCceEEEecCcccCC---------
Confidence 4457899999999999999999986 579999998652 22468999999998742
Q ss_pred CCCCccEEeeC
Q 030299 116 DGCKADLVVCD 126 (179)
Q Consensus 116 ~~~~~D~VlsD 126 (179)
+ ++|+++.-
T Consensus 137 p--~aD~~~l~ 145 (244)
T d1fp2a2 137 P--NADAVLLK 145 (244)
T ss_dssp C--CCSEEEEE
T ss_pred C--CCcEEEEE
Confidence 2 46888764
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.06 E-value=0.00069 Score=52.79 Aligned_cols=75 Identities=12% Similarity=0.104 Sum_probs=56.4
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchhhH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNARTA 108 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~~~ 108 (179)
+..+||+||++.|.-|.++++.++. +++|+.+|.++.. .. ..++++.||..+. +
T Consensus 59 ~~k~iLEiGT~~GyStl~la~al~~------------~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~--L 124 (227)
T d1susa1 59 NAKNTMEIGVYTGYSLLATALAIPE------------DGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPV--L 124 (227)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCT------------TCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHH--H
T ss_pred CCCcEEEecchhhhhHHHHHhhCCC------------CcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHH--H
Confidence 4679999999999999999999874 6999999999941 12 3588888988663 3
Q ss_pred HHHHhhc-CCCCccEEeeCCCC
Q 030299 109 EVVIRHF-DGCKADLVVCDGAP 129 (179)
Q Consensus 109 ~~l~~~~-~~~~~D~VlsD~~~ 129 (179)
.++...- ..++||+|+.|+..
T Consensus 125 ~~l~~~~~~~~~fD~iFiDa~k 146 (227)
T d1susa1 125 DEMIKDEKNHGSYDFIFVDADK 146 (227)
T ss_dssp HHHHHCGGGTTCBSEEEECSCS
T ss_pred HHHHhccccCCceeEEEeccch
Confidence 3333211 24589999999853
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.77 E-value=0.0017 Score=52.84 Aligned_cols=60 Identities=15% Similarity=0.062 Sum_probs=47.2
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC--------CCCCCeeEEeccccchhhHHHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM--------APIEGVIQVQGDITNARTAEVVI 112 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~--------~~~~~v~~i~gDi~~~~~~~~l~ 112 (179)
+++.|||+|.|||.+|..+.++..+ -+|+++++.+. ..-.+++.+.+|+....+...+.
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~-------------~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l~~~~~~~l~ 109 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCP-------------RQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYDWSTYSNLI 109 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCC-------------SEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTCHHHHHHHT
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCC-------------CEEEEEECCHHHHHHHHHhccCCCcEEEeCchhhcchhhhhh
Confidence 4678999999999999999988542 48999999873 12357899999999877655554
Q ss_pred h
Q 030299 113 R 113 (179)
Q Consensus 113 ~ 113 (179)
+
T Consensus 110 ~ 110 (322)
T d1i4wa_ 110 D 110 (322)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=96.59 E-value=0.0028 Score=50.45 Aligned_cols=113 Identities=11% Similarity=0.005 Sum_probs=75.9
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------------CCCCCeeEEeccccc
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------------APIEGVIQVQGDITN 104 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------------~~~~~v~~i~gDi~~ 104 (179)
.+..+||-||.|.|+.+..+++..+ ..+|+.||+.|. ..-++++.+.+|...
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~-------------~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~ 140 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPS-------------VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFM 140 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTT-------------CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHH
T ss_pred CCcceEEecCCCCcHHHHHHHhcCC-------------cceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHH
Confidence 4567999999999999999876543 469999999983 023688889999876
Q ss_pred hhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHHH---H------------HHHHHHHHHHHhhceE
Q 030299 105 ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSIQ---F------------FIYELVFCLRQLLQYV 169 (179)
Q Consensus 105 ~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~~---~------------~~~~~~~~~~~~f~~v 169 (179)
.- +. .+++||+|++|...+.+..+..-...-.+++...|+- + .+...+=-|+..|..|
T Consensus 141 ~l------~~-~~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i~~tl~~~F~~v 213 (274)
T d1iy9a_ 141 HI------AK-SENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPIT 213 (274)
T ss_dssp HH------HT-CCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEE
T ss_pred HH------hh-cCCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCCccccHHHHHHHHHhhhhhcCce
Confidence 42 11 3468999999986554444443333345556555541 0 1223444578889988
Q ss_pred EEe
Q 030299 170 ILD 172 (179)
Q Consensus 170 ~~~ 172 (179)
..-
T Consensus 214 ~~y 216 (274)
T d1iy9a_ 214 KLY 216 (274)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=96.43 E-value=0.0067 Score=49.26 Aligned_cols=114 Identities=15% Similarity=0.139 Sum_probs=69.1
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC--------CC-------CCCeeEEeccccc
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM--------AP-------IEGVIQVQGDITN 104 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~--------~~-------~~~v~~i~gDi~~ 104 (179)
....+||-||.|.|+.+..+++.-+ ..+|+.||+.|. -+ .++++.+.+|...
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~-------------v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~ 171 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHES-------------VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFE 171 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTT-------------CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHH
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCC-------------cceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHH
Confidence 4467999999999999998876533 468999999983 01 3678888888876
Q ss_pred hhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHHH---H------------HHHHHHHHHHHhhceE
Q 030299 105 ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSIQ---F------------FIYELVFCLRQLLQYV 169 (179)
Q Consensus 105 ~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~~---~------------~~~~~~~~~~~~f~~v 169 (179)
.- +. .+++||+|++|...+.+.....-...-.+++...|+- + .+..++-.++..|..|
T Consensus 172 ~l------~~-~~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~v 244 (312)
T d2b2ca1 172 FL------KN-HKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPAV 244 (312)
T ss_dssp HH------HH-CTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSEE
T ss_pred HH------Hh-CCCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCChHHhHHHHHHHHHHhhhccceE
Confidence 41 22 3468999999986443322222222223444444431 0 1233445668889998
Q ss_pred EEee
Q 030299 170 ILDG 173 (179)
Q Consensus 170 ~~~~ 173 (179)
....
T Consensus 245 ~~y~ 248 (312)
T d2b2ca1 245 TYAQ 248 (312)
T ss_dssp EEEE
T ss_pred EEee
Confidence 7653
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=96.27 E-value=0.0037 Score=47.90 Aligned_cols=66 Identities=18% Similarity=0.095 Sum_probs=52.5
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~~ 109 (179)
++.+|+|+|+|.|-=...++-..| +.+|+.+|.+.-+ .+.|++.+.+.+.+..
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p-------------~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~--- 128 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRP-------------EAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP--- 128 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCT-------------TSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC---
T ss_pred cCCceeeeeccCCceeeehhhhcc-------------cceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhc---
Confidence 356999999999988888887655 6899999988731 3679999999988853
Q ss_pred HHHhhcCCCCccEEeeCCC
Q 030299 110 VVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~ 128 (179)
...+||+|+|-+-
T Consensus 129 ------~~~~fD~V~sRA~ 141 (207)
T d1jsxa_ 129 ------SEPPFDGVISRAF 141 (207)
T ss_dssp ------CCSCEEEEECSCS
T ss_pred ------cccccceehhhhh
Confidence 3457999999663
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=96.12 E-value=0.005 Score=51.38 Aligned_cols=84 Identities=10% Similarity=0.018 Sum_probs=52.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-------------CCCCeeEEeccccchh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------------PIEGVIQVQGDITNAR 106 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-------------~~~~v~~i~gDi~~~~ 106 (179)
+++.+|+|-|||+|+|...+.+++.................+.|+|+.+.. .........+|..+..
T Consensus 161 ~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l~~~ 240 (425)
T d2okca1 161 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKE 240 (425)
T ss_dssp CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSC
T ss_pred cccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCchhhhh
Confidence 457899999999999999988877421000000000001359999999831 1123445566766532
Q ss_pred hHHHHHhhcCCCCccEEeeCCCCCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGAPDVT 132 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~~~~~ 132 (179)
+..+||+|+++.+....
T Consensus 241 ---------~~~~fD~Ii~NPPfg~~ 257 (425)
T d2okca1 241 ---------PSTLVDVILANPPFGTR 257 (425)
T ss_dssp ---------CSSCEEEEEECCCSSCC
T ss_pred ---------cccccceEEecCCCCCC
Confidence 34689999999887553
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=96.10 E-value=0.0052 Score=49.72 Aligned_cols=112 Identities=16% Similarity=0.095 Sum_probs=71.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------------CCCCeeEEecccc
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------------PIEGVIQVQGDIT 103 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------------~~~~v~~i~gDi~ 103 (179)
...++||.||.|.|+....+++..+ ..+|+.||+.|.- .-++++.+.+|..
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~-------------~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~ 142 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPT-------------VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDAR 142 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTT-------------CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHH
T ss_pred CCcceEEEeCCCchHHHHHHHhcCC-------------cceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHH
Confidence 4567999999999999988876533 4789999999830 1357889999988
Q ss_pred chhhHHHHHhhcCCCCccEEeeCCCCCCCCCCc---ccHHHHHHHHHHHHHH---H------------HHHHHH-HHHHH
Q 030299 104 NARTAEVVIRHFDGCKADLVVCDGAPDVTGLHD---MDEFVQSQLILAVSIQ---F------------FIYELV-FCLRQ 164 (179)
Q Consensus 104 ~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~---~d~~~q~~L~~~AL~~---~------------~~~~~~-~~~~~ 164 (179)
+.- +. .+.+||+|++|...+...... .-...-.+++...|+- + .+...+ =.++.
T Consensus 143 ~~l------~~-~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~ 215 (312)
T d1uira_ 143 AYL------ER-TEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVRE 215 (312)
T ss_dssp HHH------HH-CCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHT
T ss_pred HHh------hh-cCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHHH
Confidence 742 12 246899999998643322111 1112223455444431 0 022333 34788
Q ss_pred hhceEEE
Q 030299 165 LLQYVIL 171 (179)
Q Consensus 165 ~f~~v~~ 171 (179)
.|..|..
T Consensus 216 ~F~~V~~ 222 (312)
T d1uira_ 216 AFRYVRS 222 (312)
T ss_dssp TCSEEEE
T ss_pred hCceEEE
Confidence 9999886
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.02 E-value=0.0039 Score=49.56 Aligned_cols=111 Identities=10% Similarity=0.064 Sum_probs=69.1
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------------------CCCCeeEE
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------------PIEGVIQV 98 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------------------~~~~v~~i 98 (179)
.+..+||-||+|.|+....+++. + ..+|+.||+.|.- ..++++.+
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~-~-------------~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~ 136 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQH-D-------------VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLT 136 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-C-------------CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEE
T ss_pred CCCceEEEecCCchHHHHHHHHh-C-------------CceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEE
Confidence 45789999999999999887653 3 3589999999830 13578889
Q ss_pred eccccchhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHHH---H------------HHHHHHHHHH
Q 030299 99 QGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSIQ---F------------FIYELVFCLR 163 (179)
Q Consensus 99 ~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~~---~------------~~~~~~~~~~ 163 (179)
.+|....- +. +++||+|++|.....+.........-.+.+...|+- + .+...+=-|+
T Consensus 137 ~~Da~~~l------~~--~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~~~~tl~ 208 (276)
T d1mjfa_ 137 IGDGFEFI------KN--NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMK 208 (276)
T ss_dssp ESCHHHHH------HH--CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHH
T ss_pred EChHHHHH------hc--cCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecCCcchhHHHHHHHHHHHH
Confidence 99987642 11 368999999986433222222222234455544431 0 1122334568
Q ss_pred HhhceEEEe
Q 030299 164 QLLQYVILD 172 (179)
Q Consensus 164 ~~f~~v~~~ 172 (179)
..|.+|..-
T Consensus 209 ~~F~~v~~y 217 (276)
T d1mjfa_ 209 KVFDRVYYY 217 (276)
T ss_dssp HHCSEEEEE
T ss_pred hhCCeeEEE
Confidence 889998863
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.80 E-value=0.0082 Score=44.99 Aligned_cols=76 Identities=16% Similarity=0.061 Sum_probs=50.1
Q ss_pred CCCCCEEEEEccCCCh-HHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCeeEEeccccchhhHHHHHh
Q 030299 39 FEGVKRVVDLCAAPGS-WSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 39 l~~g~~VlDLgagpGg-~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----~~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
+++|++||-+||||.| .+..+++..+ ..+|+++|.++.+ .-.|...+. |-.+.+..+++.+
T Consensus 23 v~~G~tVlV~GaG~vGl~a~~~ak~~g-------------a~~Vi~~d~~~~rl~~a~~~Ga~~~~-~~~~~~~~~~i~~ 88 (195)
T d1kola2 23 VGPGSTVYVAGAGPVGLAAAASARLLG-------------AAVVIVGDLNPARLAHAKAQGFEIAD-LSLDTPLHEQIAA 88 (195)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-------------CSEEEEEESCHHHHHHHHHTTCEEEE-TTSSSCHHHHHHH
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhhc-------------ccceeeecccchhhHhhhhccccEEE-eCCCcCHHHHHHH
Confidence 4899999999999955 5556666665 4699999999842 123554332 2233334455555
Q ss_pred hcCCCCccEEeeCCC
Q 030299 114 HFDGCKADLVVCDGA 128 (179)
Q Consensus 114 ~~~~~~~D~VlsD~~ 128 (179)
...+..+|+++-...
T Consensus 89 ~t~g~g~D~vid~vG 103 (195)
T d1kola2 89 LLGEPEVDCAVDAVG 103 (195)
T ss_dssp HHSSSCEEEEEECCC
T ss_pred HhCCCCcEEEEECcc
Confidence 556778999986543
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.68 E-value=0.012 Score=47.00 Aligned_cols=71 Identities=18% Similarity=0.158 Sum_probs=53.7
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------------CCCCeeEEeccccc
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------PIEGVIQVQGDITN 104 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------------~~~~v~~i~gDi~~ 104 (179)
.+..+||=||.|.|+....+++..+ ..+|+.||+.|.- ..++++.+.+|...
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~-------------~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~ 145 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHAS-------------IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVA 145 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTT-------------CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHH
T ss_pred CCCcceEEecCCchHHHHHHHhccc-------------ceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHH
Confidence 4567999999999999998876533 4689999999830 14678888998876
Q ss_pred hhhHHHHHhhcCCCCccEEeeCCCC
Q 030299 105 ARTAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 105 ~~~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
.- ....+++||+|+.|..-
T Consensus 146 ~l------~~~~~~~yDvIi~D~~d 164 (290)
T d1xj5a_ 146 FL------KNAAEGSYDAVIVDSSD 164 (290)
T ss_dssp HH------HTSCTTCEEEEEECCCC
T ss_pred HH------hhccccCccEEEEcCCC
Confidence 42 12345689999999864
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.65 E-value=0.0064 Score=48.64 Aligned_cols=112 Identities=12% Similarity=0.109 Sum_probs=68.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------------CCCCeeEEeccccc
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------PIEGVIQVQGDITN 104 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------------~~~~v~~i~gDi~~ 104 (179)
...++||-||.|.|+.+..+.+.-+ ..+|+.||+.|.- .-++++.+.+|...
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~-------------~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~ 143 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPS-------------VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFE 143 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTT-------------CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHH
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCC-------------cceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHH
Confidence 4567999999999999999876533 4699999999830 13689999999776
Q ss_pred hhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHHH---H------------HHHHHHHHHHHhhceE
Q 030299 105 ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSIQ---F------------FIYELVFCLRQLLQYV 169 (179)
Q Consensus 105 ~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~~---~------------~~~~~~~~~~~~f~~v 169 (179)
.- +. ..++||+|++|...+.+.....-.....+.+...|+- + .+....-.++..|..|
T Consensus 144 ~l------~~-~~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~~~~tl~~~F~~v 216 (285)
T d2o07a1 144 FM------KQ-NQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPVV 216 (285)
T ss_dssp HH------HT-CSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHHCSEE
T ss_pred HH------hc-CCCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccchhhhHHHHHHHHHHHHhcCCee
Confidence 42 22 3468999999986443322222222234444444431 0 1123345568889988
Q ss_pred EE
Q 030299 170 IL 171 (179)
Q Consensus 170 ~~ 171 (179)
..
T Consensus 217 ~~ 218 (285)
T d2o07a1 217 AY 218 (285)
T ss_dssp EE
T ss_pred eE
Confidence 75
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=95.28 E-value=0.012 Score=47.23 Aligned_cols=113 Identities=9% Similarity=0.010 Sum_probs=69.9
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------------CCCCeeEEeccccc
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------PIEGVIQVQGDITN 104 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------------~~~~v~~i~gDi~~ 104 (179)
....+||=||.|.|+....+++..+ ..+|++||+.|.- ..++++.+.+|...
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~-------------~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~ 154 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDS-------------VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAE 154 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTT-------------CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHH
T ss_pred CCCceEEEecCCchHHHHHHHhcCC-------------CceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHH
Confidence 4467999999999999988876543 4689999999830 13688888999876
Q ss_pred hhhHHHHHhhcCCCCccEEeeCCCCCCCCC-CcccHHHHHHHHHHHHHH---H------------HHHHHHHHHHHhhce
Q 030299 105 ARTAEVVIRHFDGCKADLVVCDGAPDVTGL-HDMDEFVQSQLILAVSIQ---F------------FIYELVFCLRQLLQY 168 (179)
Q Consensus 105 ~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~-~~~d~~~q~~L~~~AL~~---~------------~~~~~~~~~~~~f~~ 168 (179)
.- +. .+++||+|++|..-+..+. ...-...-.+++...|+- + .+...+=-+++.|..
T Consensus 155 ~l------~~-~~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp~~~~~~~~~i~~tl~~vF~~ 227 (295)
T d1inla_ 155 YV------RK-FKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPI 227 (295)
T ss_dssp HG------GG-CSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSE
T ss_pred HH------hc-CCCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCChhhhhHHHHHHHHHHHhhcce
Confidence 42 22 2468999999985433222 222223335555555541 0 112333456888988
Q ss_pred EEEe
Q 030299 169 VILD 172 (179)
Q Consensus 169 v~~~ 172 (179)
|..-
T Consensus 228 v~~y 231 (295)
T d1inla_ 228 TRVY 231 (295)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 8753
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=94.61 E-value=0.0076 Score=44.27 Aligned_cols=74 Identities=16% Similarity=0.151 Sum_probs=49.5
Q ss_pred CCCCCEEEEEccCC-ChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCeeEEeccccchhhHHHHHh
Q 030299 39 FEGVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 39 l~~g~~VlDLgagp-Gg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~----~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
+++|++||=+|||| |..+..+++..+ ..+|+++|.++.+. --|+.. ..|..+.+..+++.+
T Consensus 25 ~~~g~~VlI~GaG~vGl~~~q~ak~~G-------------a~~Vi~~d~~~~r~~~a~~lGa~~-~i~~~~~~~~~~v~~ 90 (174)
T d1jqba2 25 IEMGSSVVVIGIGAVGLMGIAGAKLRG-------------AGRIIGVGSRPICVEAAKFYGATD-ILNYKNGHIEDQVMK 90 (174)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTT-------------CSCEEEECCCHHHHHHHHHHTCSE-EECGGGSCHHHHHHH
T ss_pred CCCCCEEEEEcCCcchhhhhhhhhccc-------------ccccccccchhhhHHHHHhhCccc-cccccchhHHHHHHH
Confidence 48999999999998 666666777654 24799999988431 123321 124444445566777
Q ss_pred hcCCCCccEEeeC
Q 030299 114 HFDGCKADLVVCD 126 (179)
Q Consensus 114 ~~~~~~~D~VlsD 126 (179)
...+..+|+|+-.
T Consensus 91 ~t~g~G~D~vid~ 103 (174)
T d1jqba2 91 LTNGKGVDRVIMA 103 (174)
T ss_dssp HTTTSCEEEEEEC
T ss_pred HhhccCcceEEEc
Confidence 6677789998753
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=94.50 E-value=0.024 Score=41.47 Aligned_cols=73 Identities=12% Similarity=0.020 Sum_probs=45.6
Q ss_pred CCCCCEEEEEccCC-ChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCee-EEeccccchhhHHHHH
Q 030299 39 FEGVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVI-QVQGDITNARTAEVVI 112 (179)
Q Consensus 39 l~~g~~VlDLgagp-Gg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~----~~~v~-~i~gDi~~~~~~~~l~ 112 (179)
+++|++||=+|||| |..+..+++..+ ...|+++|.++.+. --|.. .+...-.+ +..+.+.
T Consensus 26 v~~G~~VlV~G~G~iGl~a~~~ak~~G-------------a~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~-~~~~~~~ 91 (174)
T d1e3ia2 26 VTPGSTCAVFGLGCVGLSAIIGCKIAG-------------ASRIIAIDINGEKFPKAKALGATDCLNPRELD-KPVQDVI 91 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-------------CSEEEEECSCGGGHHHHHHTTCSEEECGGGCS-SCHHHHH
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHhC-------------CceeeeeccchHHHHHHHHhCCCcccCCccch-hhhhhhH
Confidence 58999999999999 666667777765 36899999998531 12332 22211112 2233333
Q ss_pred hhcCCCCccEEee
Q 030299 113 RHFDGCKADLVVC 125 (179)
Q Consensus 113 ~~~~~~~~D~Vls 125 (179)
+...++++|+|+-
T Consensus 92 ~~~~~~G~d~vie 104 (174)
T d1e3ia2 92 TELTAGGVDYSLD 104 (174)
T ss_dssp HHHHTSCBSEEEE
T ss_pred hhhhcCCCcEEEE
Confidence 3344568999874
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.47 E-value=0.011 Score=46.65 Aligned_cols=69 Identities=17% Similarity=0.239 Sum_probs=47.0
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCe-EEEEeCCCCC------CCCCeeEEeccccchhhHHHHHhh
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPL-IVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRH 114 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~-VvavD~~~~~------~~~~v~~i~gDi~~~~~~~~l~~~ 114 (179)
..+|+||.||.||++.-+.+. +. ..+ |.|+|+.+-. .+++..++.+||.+.... ++
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~a-G~------------~~~~~~a~E~~~~a~~~~~~n~~~~~~~~~di~~~~~~-~~--- 64 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRES-CI------------PAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLE-EF--- 64 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHH-TC------------SEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHH-HH---
T ss_pred CCEEEEcCcCccHHHHHHHHc-CC------------CCeEEEEEECCHHHHHHHHHHCCCCCcccCchhhCCHh-Hc---
Confidence 358999999999999876443 32 223 6799998842 256777888999876532 22
Q ss_pred cCCCCccEEeeCCC
Q 030299 115 FDGCKADLVVCDGA 128 (179)
Q Consensus 115 ~~~~~~D~VlsD~~ 128 (179)
+...+|+++.--+
T Consensus 65 -~~~~~Dll~ggpP 77 (343)
T d1g55a_ 65 -DRLSFDMILMSPP 77 (343)
T ss_dssp -HHHCCSEEEECCC
T ss_pred -CCCCccEEEeecc
Confidence 2236899986554
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=94.42 E-value=0.03 Score=40.71 Aligned_cols=74 Identities=20% Similarity=0.146 Sum_probs=45.8
Q ss_pred CCCCCCEEEEEccCC-ChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCeeEEeccccc---hhhHH
Q 030299 38 IFEGVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITN---ARTAE 109 (179)
Q Consensus 38 ll~~g~~VlDLgagp-Gg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~----~~~v~~i~gDi~~---~~~~~ 109 (179)
-+++|++||-+|||| |.....+++..+ ..+|+++|.++.+. --|...+ .|..+ .+..+
T Consensus 25 ~~~~G~~VlV~GaG~iG~~~~~~ak~~G-------------a~~Vi~~~~~~~~~~~a~~lGa~~v-i~~~~~~~~~~~~ 90 (182)
T d1vj0a2 25 ESFAGKTVVIQGAGPLGLFGVVIARSLG-------------AENVIVIAGSPNRLKLAEEIGADLT-LNRRETSVEERRK 90 (182)
T ss_dssp SCCBTCEEEEECCSHHHHHHHHHHHHTT-------------BSEEEEEESCHHHHHHHHHTTCSEE-EETTTSCHHHHHH
T ss_pred CCCCCCEEEEECCCccchhheecccccc-------------cccccccccccccccccccccceEE-EeccccchHHHHH
Confidence 358899999999986 555666677665 24899999988421 0133211 12222 22344
Q ss_pred HHHhhcCCCCccEEee
Q 030299 110 VVIRHFDGCKADLVVC 125 (179)
Q Consensus 110 ~l~~~~~~~~~D~Vls 125 (179)
++.+...+.++|+|+-
T Consensus 91 ~i~~~~~~~g~Dvvid 106 (182)
T d1vj0a2 91 AIMDITHGRGADFILE 106 (182)
T ss_dssp HHHHHTTTSCEEEEEE
T ss_pred HHHHhhCCCCceEEee
Confidence 5555555668999884
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=94.27 E-value=0.013 Score=46.03 Aligned_cols=69 Identities=17% Similarity=0.101 Sum_probs=52.4
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------------C------CCCeeEEeccc
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------------P------IEGVIQVQGDI 102 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------------~------~~~v~~i~gDi 102 (179)
.+|||+-||-|..+.+++.. ++.|++++-+|.- + ..+++++.+|.
T Consensus 90 ~~VlD~TaGlG~Da~vlA~~---------------G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds 154 (250)
T d2oyra1 90 PDVVDATAGLGRDAFVLASV---------------GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (250)
T ss_dssp CCEEETTCTTCHHHHHHHHH---------------TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred CEEEECCCcccHHHHHHHhC---------------CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcH
Confidence 48999999999999999976 3689999999831 1 13688889997
Q ss_pred cchhhHHHHHhhcCCCCccEEeeCCCCCCCC
Q 030299 103 TNARTAEVVIRHFDGCKADLVVCDGAPDVTG 133 (179)
Q Consensus 103 ~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g 133 (179)
.+.- ... ...||+|..|..++...
T Consensus 155 ~~~L------~~~-~~~~DvIYlDPMFp~~~ 178 (250)
T d2oyra1 155 LTAL------TDI-TPRPQVVYLDPMFPHKQ 178 (250)
T ss_dssp HHHS------TTC-SSCCSEEEECCCCCCCC
T ss_pred HHHH------hcc-CCCCCEEEECCCCcccc
Confidence 6642 112 34699999999876543
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=94.15 E-value=0.046 Score=39.36 Aligned_cols=76 Identities=8% Similarity=0.002 Sum_probs=46.4
Q ss_pred CCCCCEEEEEccCCChHHHHHH-HHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCeeEEeccccchhhHHHHHh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLS-RKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~-~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~----~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
++||++||=+|||++|.+-... ...+ ...|+++|.++.+. -.|.....-+-...+...+..+
T Consensus 26 vk~GdtVlV~GaGG~G~~~~~~~~~~g-------------~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~ 92 (176)
T d2jhfa2 26 VTQGSTCAVFGLGGVGLSVIMGCKAAG-------------AARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLT 92 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-------------CSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHH
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHcC-------------CceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHH
Confidence 5899999999998877655443 3433 47999999998531 1233222111122233344444
Q ss_pred hcCCCCccEEeeCC
Q 030299 114 HFDGCKADLVVCDG 127 (179)
Q Consensus 114 ~~~~~~~D~VlsD~ 127 (179)
...++++|+|+-..
T Consensus 93 ~~~~~G~D~vid~~ 106 (176)
T d2jhfa2 93 EMSNGGVDFSFEVI 106 (176)
T ss_dssp HHTTSCBSEEEECS
T ss_pred HHhcCCCCEEEecC
Confidence 45567899988653
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=93.68 E-value=0.053 Score=41.94 Aligned_cols=65 Identities=15% Similarity=0.230 Sum_probs=44.9
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CCCCeeEEeccccchhhHHHHHhhcC
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRHFD 116 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~~~v~~i~gDi~~~~~~~~l~~~~~ 116 (179)
.+|+||.||.||++.-+.+. +. -.|.|+|+.+.. ..++ ..+.+||++.... .+
T Consensus 1 mk~~~lF~G~Gg~~~gl~~a-G~-------------~~~~a~e~d~~a~~~~~~N~~~-~~~~~Di~~~~~~-----~~- 59 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKA-GF-------------RIICANEYDKSIWKTYESNHSA-KLIKGDISKISSD-----EF- 59 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHH-TC-------------EEEEEEECCHHHHHHHHHHCCS-EEEESCTTTSCGG-----GS-
T ss_pred CeEEEeCcCcCHHHHHHHHC-CC-------------EEEEEEeCCHHHHHHHHHHCCC-CCccCChhhCCHh-----Hc-
Confidence 47999999999999877543 41 246699999842 2333 4678999987532 13
Q ss_pred CCCccEEeeCCCC
Q 030299 117 GCKADLVVCDGAP 129 (179)
Q Consensus 117 ~~~~D~VlsD~~~ 129 (179)
..+|+++.--+|
T Consensus 60 -~~~dll~~g~PC 71 (324)
T d1dcta_ 60 -PKCDGIIGGPPC 71 (324)
T ss_dssp -CCCSEEEECCCC
T ss_pred -ccccEEeecccc
Confidence 368998876543
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.44 E-value=0.45 Score=34.41 Aligned_cols=71 Identities=13% Similarity=0.061 Sum_probs=49.1
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCeeEEeccccchhhHHHHHhhcCCC
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHFDGC 118 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----~~~~v~~i~gDi~~~~~~~~l~~~~~~~ 118 (179)
++|+ |=.|+|..-..+++++-. .+..|++++-++.+ ..++++++.+|+++.+...+.. .
T Consensus 4 kkIl-V~GatG~iG~~v~~~Ll~-----------~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al---~-- 66 (205)
T d1hdoa_ 4 KKIA-IFGATGQTGLTTLAQAVQ-----------AGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTV---A-- 66 (205)
T ss_dssp CEEE-EESTTSHHHHHHHHHHHH-----------TTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHH---T--
T ss_pred CEEE-EECCCCHHHHHHHHHHHH-----------CcCEEEEEEcChhhcccccccccccccccccchhhHHHHh---c--
Confidence 5677 455678777777665422 14689999877642 2368999999999987655543 2
Q ss_pred CccEEeeCCCCC
Q 030299 119 KADLVVCDGAPD 130 (179)
Q Consensus 119 ~~D~VlsD~~~~ 130 (179)
.+|.|++-.++.
T Consensus 67 ~~d~vi~~~g~~ 78 (205)
T d1hdoa_ 67 GQDAVIVLLGTR 78 (205)
T ss_dssp TCSEEEECCCCT
T ss_pred CCCEEEEEeccC
Confidence 479999876543
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=93.34 E-value=0.032 Score=43.39 Aligned_cols=70 Identities=13% Similarity=0.067 Sum_probs=52.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
+++.+++|+|+|.|-=...++-..+ +.+|+-+|.+.-+ .+.|+..+.+.+.+....
T Consensus 69 ~~~~~ilDiGSGaGfPGi~laI~~p-------------~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~ 135 (239)
T d1xdza_ 69 NQVNTICDVGAGAGFPSLPIKICFP-------------HLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQR 135 (239)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCT-------------TCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTC
T ss_pred cCCCeEEeecCCCchHHHHHHHhCC-------------CccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhcccc
Confidence 3567999999999988888887665 6899999988731 368998888888764321
Q ss_pred HHHHhhcCCCCccEEeeCC
Q 030299 109 EVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~ 127 (179)
. .. ...||+|+|-+
T Consensus 136 ~----~~-~~~~D~v~sRA 149 (239)
T d1xdza_ 136 K----DV-RESYDIVTARA 149 (239)
T ss_dssp T----TT-TTCEEEEEEEC
T ss_pred c----cc-cccceEEEEhh
Confidence 0 01 24799999975
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=93.33 E-value=0.052 Score=46.26 Aligned_cols=86 Identities=15% Similarity=0.047 Sum_probs=49.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCC-----CCCCCeEEEEeCCCCC-----------CC-----CCeeEE
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSR-----EGDLPLIVAIDLQPMA-----------PI-----EGVIQV 98 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~-----~~~~~~VvavD~~~~~-----------~~-----~~v~~i 98 (179)
.++.+|+|-|||+|+|...+.+.+........... ......++|+|+.+.. .. .+-...
T Consensus 163 ~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~~~ 242 (524)
T d2ar0a1 163 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIR 242 (524)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEE
T ss_pred ccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccccccccchhh
Confidence 45789999999999999888777642111000000 0011358999999821 11 112233
Q ss_pred eccccchhhHHHHHhhcCCCCccEEeeCCCCCCC
Q 030299 99 QGDITNARTAEVVIRHFDGCKADLVVCDGAPDVT 132 (179)
Q Consensus 99 ~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~ 132 (179)
.+|....+. ....+||+|+++.++...
T Consensus 243 ~~~~l~~d~-------~~~~kfD~Ii~NPPfg~~ 269 (524)
T d2ar0a1 243 LGNTLGSDG-------ENLPKAHIVATNPPFGSA 269 (524)
T ss_dssp ESCTTSHHH-------HTSCCEEEEEECCCCTTC
T ss_pred hhhhhhhcc-------cccccceeEEecCCcccc
Confidence 344433221 234589999999877543
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=92.82 E-value=0.082 Score=37.75 Aligned_cols=74 Identities=14% Similarity=0.106 Sum_probs=44.5
Q ss_pred CCCCCEEEEEccCCChHHHHHH-HHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCeeEEeccccch-hhHHHHH
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLS-RKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNA-RTAEVVI 112 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~-~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~----~~~v~~i~gDi~~~-~~~~~l~ 112 (179)
+++|++|+=+||||++.+..+. ...+ ...|+++|.++.+. --|...+ -|..+. +..++..
T Consensus 26 ~k~g~~VlI~G~Gg~g~~~~~~~~~~g-------------~~~Vi~~~~~~~rl~~a~~~GAd~~-in~~~~~~~~~~~~ 91 (175)
T d1cdoa2 26 VEPGSTCAVFGLGAVGLAAVMGCHSAG-------------AKRIIAVDLNPDKFEKAKVFGATDF-VNPNDHSEPISQVL 91 (175)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-------------CSEEEEECSCGGGHHHHHHTTCCEE-ECGGGCSSCHHHHH
T ss_pred CCCCCEEEEEecCCccchHHHHHHHHh-------------hchheeecchHHHHHHHHHcCCcEE-EcCCCcchhHHHHH
Confidence 5899999999999977766544 4433 46899999998531 1233221 122221 1223344
Q ss_pred hhcCCCCccEEeeC
Q 030299 113 RHFDGCKADLVVCD 126 (179)
Q Consensus 113 ~~~~~~~~D~VlsD 126 (179)
....++++|+|+-.
T Consensus 92 ~~~~~~G~d~vid~ 105 (175)
T d1cdoa2 92 SKMTNGGVDFSLEC 105 (175)
T ss_dssp HHHHTSCBSEEEEC
T ss_pred HhhccCCcceeeee
Confidence 44445688998753
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.81 E-value=0.23 Score=37.71 Aligned_cols=77 Identities=19% Similarity=0.177 Sum_probs=56.6
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CCCCeeEEeccccchhhHHHHHhh
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRH 114 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~~~v~~i~gDi~~~~~~~~l~~~ 114 (179)
.|+++|=-|++.|. -..+++++.. .+.+|+.+|.++.. ..+++..+++|+++.+..+++.+.
T Consensus 6 ~GK~~lITGas~GI-G~aia~~la~-----------~G~~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 73 (244)
T d1pr9a_ 6 AGRRVLVTGAGKGI-GRGTVQALHA-----------TGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGS 73 (244)
T ss_dssp TTCEEEEESTTSHH-HHHHHHHHHH-----------TTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTT
T ss_pred CCCEEEEeCCCCHH-HHHHHHHHHH-----------cCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHH
Confidence 67889988988664 4444444421 25799999987631 356888999999999988888887
Q ss_pred cCCCCccEEeeCCCCCC
Q 030299 115 FDGCKADLVVCDGAPDV 131 (179)
Q Consensus 115 ~~~~~~D~VlsD~~~~~ 131 (179)
+. ++|+++.+.....
T Consensus 74 ~g--~iDilVnnAg~~~ 88 (244)
T d1pr9a_ 74 VG--PVDLLVNNAAVAL 88 (244)
T ss_dssp CC--CCCEEEECCCCCC
T ss_pred hC--CceEEEecccccc
Confidence 73 6999999876543
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.46 E-value=0.077 Score=43.66 Aligned_cols=36 Identities=17% Similarity=0.038 Sum_probs=29.5
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~ 89 (179)
++.+|||+.||+|..+.-.+...+ ...|+++|+++.
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~-------------~~~V~~nDis~~ 80 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETP-------------AEEVWLNDISED 80 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSS-------------CSEEEEEESCHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCC-------------CCEEEEecCCHH
Confidence 567999999999999996555554 358999999984
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.33 E-value=0.31 Score=36.94 Aligned_cols=77 Identities=18% Similarity=0.123 Sum_probs=55.9
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC------CCCCCeeEEeccccchhhHHHHHhh
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------APIEGVIQVQGDITNARTAEVVIRH 114 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~------~~~~~v~~i~gDi~~~~~~~~l~~~ 114 (179)
+|+++|=-|++.|. -..+++++.. .+.+|+.+|.++- +..+++..+++|+++.+..+++.+.
T Consensus 4 ~GK~alITGas~GI-G~aia~~la~-----------~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 71 (242)
T d1cyda_ 4 SGLRALVTGAGKGI-GRDTVKALHA-----------SGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGG 71 (242)
T ss_dssp TTCEEEEESTTSHH-HHHHHHHHHH-----------TTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTT
T ss_pred CCCEEEEeCCCcHH-HHHHHHHHHH-----------CCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHH
Confidence 57788888877664 4444444421 2579999998763 1357899999999999888888887
Q ss_pred cCCCCccEEeeCCCCCC
Q 030299 115 FDGCKADLVVCDGAPDV 131 (179)
Q Consensus 115 ~~~~~~D~VlsD~~~~~ 131 (179)
+ ++.|+++++.+...
T Consensus 72 ~--g~iDilVnnAg~~~ 86 (242)
T d1cyda_ 72 I--GPVDLLVNNAALVI 86 (242)
T ss_dssp C--CCCSEEEECCCCCC
T ss_pred c--CCCeEEEECCcccc
Confidence 7 47999999876433
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=92.19 E-value=0.4 Score=37.99 Aligned_cols=75 Identities=19% Similarity=0.129 Sum_probs=51.5
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCC---------------CCC------------CCCC
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQ---------------PMA------------PIEG 94 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~---------------~~~------------~~~~ 94 (179)
|++||=.|+ +|-.-.++++++-. .+..|+++|.. +.. ...+
T Consensus 1 g~kILVTGa-tGfiG~~lv~~Ll~-----------~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (393)
T d1i24a_ 1 GSRVMVIGG-DGYCGWATALHLSK-----------KNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKS 68 (393)
T ss_dssp -CEEEEETT-TSHHHHHHHHHHHH-----------TTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCC
T ss_pred CCEEEEECC-CcHHHHHHHHHHHH-----------CcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCC
Confidence 577877775 78777777666532 24789999932 111 0257
Q ss_pred eeEEeccccchhhHHHHHhhcCCCCccEEeeCCCCCC
Q 030299 95 VIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDV 131 (179)
Q Consensus 95 v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~ 131 (179)
++++++|++|.+..+++.+. .++|+|++-++...
T Consensus 69 i~~~~~Dl~d~~~l~~~~~~---~~~d~ViHlAa~~~ 102 (393)
T d1i24a_ 69 IELYVGDICDFEFLAESFKS---FEPDSVVHFGEQRS 102 (393)
T ss_dssp CEEEESCTTSHHHHHHHHHH---HCCSEEEECCSCCC
T ss_pred cEEEEccCCCHHHHHHHHHh---hcchheeccccccc
Confidence 89999999999877766553 36899999876543
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=92.06 E-value=0.055 Score=42.35 Aligned_cols=65 Identities=18% Similarity=0.188 Sum_probs=44.3
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CCCCeeEEeccccchhhHHHHHhh
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRH 114 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~~~v~~i~gDi~~~~~~~~l~~~ 114 (179)
.+.+|+||.||.||++.-+.+ .+ --.|.|+|+.+.. ..++. .++||++.... .
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~-aG-------------~~~v~a~e~d~~a~~~~~~N~~~~--~~~Di~~~~~~-----~ 68 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALES-CG-------------AECVYSNEWDKYAQEVYEMNFGEK--PEGDITQVNEK-----T 68 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHH-TT-------------CEEEEEECCCHHHHHHHHHHHSCC--CBSCGGGSCGG-----G
T ss_pred CCCeEEEECccccHHHHHHHH-CC-------------CeEEEEEeCCHHHHHHHHHHCCCC--CcCchhcCchh-----h
Confidence 468999999999999998754 33 1356779999842 12332 36899886532 1
Q ss_pred cCCCCccEEeeCCC
Q 030299 115 FDGCKADLVVCDGA 128 (179)
Q Consensus 115 ~~~~~~D~VlsD~~ 128 (179)
+ ..+|+++.--+
T Consensus 69 ~--~~~Dll~ggpP 80 (327)
T d2c7pa1 69 I--PDHDILCAGFP 80 (327)
T ss_dssp S--CCCSEEEEECC
T ss_pred c--ceeeeeecccc
Confidence 2 35899987554
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=91.31 E-value=0.17 Score=35.80 Aligned_cols=37 Identities=14% Similarity=0.127 Sum_probs=28.0
Q ss_pred CCCCCEEEEEccCCChHHH-HHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC
Q 030299 39 FEGVKRVVDLCAAPGSWSQ-VLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~-~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~ 89 (179)
+++|++||=+||||-|... .+++.. ..+|+++|.++.
T Consensus 24 ~~~g~~vlV~G~G~vG~~~~~~ak~~--------------Ga~vi~v~~~~~ 61 (170)
T d1e3ja2 24 VQLGTTVLVIGAGPIGLVSVLAAKAY--------------GAFVVCTARSPR 61 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT--------------TCEEEEEESCHH
T ss_pred CCCCCEEEEEcccccchhhHhhHhhh--------------cccccccchHHH
Confidence 4899999999999766544 444444 369999999874
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=91.15 E-value=0.16 Score=36.57 Aligned_cols=75 Identities=9% Similarity=-0.075 Sum_probs=45.6
Q ss_pred CCCCCEEEEEccCCChHHHH-HHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCeeEEeccccchh-hHHHHH
Q 030299 39 FEGVKRVVDLCAAPGSWSQV-LSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNAR-TAEVVI 112 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~-l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~----~~~v~~i~gDi~~~~-~~~~l~ 112 (179)
+++|++||=+||||.|.... +++..+ ...|+++|.++.+. --|...+ -|..+.+ ...+..
T Consensus 25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G-------------~~~Vi~~d~~~~kl~~a~~lGa~~~-i~~~~~d~~~~~~~ 90 (174)
T d1p0fa2 25 VTPGSTCAVFGLGGVGFSAIVGCKAAG-------------ASRIIGVGTHKDKFPKAIELGATEC-LNPKDYDKPIYEVI 90 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHT-------------CSEEEEECSCGGGHHHHHHTTCSEE-ECGGGCSSCHHHHH
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcC-------------CceeeccCChHHHHHHHHHcCCcEE-EcCCCchhHHHHHH
Confidence 58999999999999888665 445555 36899999988531 1243322 1222111 122333
Q ss_pred hhcCCCCccEEeeCC
Q 030299 113 RHFDGCKADLVVCDG 127 (179)
Q Consensus 113 ~~~~~~~~D~VlsD~ 127 (179)
....++.+|+|+-..
T Consensus 91 ~~~~~~G~d~vid~~ 105 (174)
T d1p0fa2 91 CEKTNGGVDYAVECA 105 (174)
T ss_dssp HHHTTSCBSEEEECS
T ss_pred HHhcCCCCcEEEEcC
Confidence 334556899988643
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=91.00 E-value=1.1 Score=35.15 Aligned_cols=78 Identities=19% Similarity=0.042 Sum_probs=51.4
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCC-CCC--------------------------CCCC
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQ-PMA--------------------------PIEG 94 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~-~~~--------------------------~~~~ 94 (179)
+++||=.| |+|-.-.++.+++-. .....|+++|.. +.. ...+
T Consensus 2 ~MKVLITG-~tGfIGs~lv~~LL~----------~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (383)
T d1gy8a_ 2 HMRVLVCG-GAGYIGSHFVRALLR----------DTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRY 70 (383)
T ss_dssp CCEEEEET-TTSHHHHHHHHHHHH----------HCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCC
T ss_pred cCEEEEeC-CCcHHHHHHHHHHHH----------hCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccc
Confidence 46777444 778777776665410 014689999941 110 1236
Q ss_pred eeEEeccccchhhHHHHHhhcCCCCccEEeeCCCCCCC
Q 030299 95 VIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVT 132 (179)
Q Consensus 95 v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~ 132 (179)
+.++++|++|.+..+++.+.. .++|+|++-+++...
T Consensus 71 ~~~~~~Di~d~~~l~~~~~~~--~~~d~ViH~Aa~~~~ 106 (383)
T d1gy8a_ 71 AALEVGDVRNEDFLNGVFTRH--GPIDAVVHMCAFLAV 106 (383)
T ss_dssp CEEEESCTTCHHHHHHHHHHS--CCCCEEEECCCCCCH
T ss_pred eEEEECcccCHHHhhhhhhcc--ceeehhhcccccccc
Confidence 889999999988777776654 369999998876443
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=91.00 E-value=0.12 Score=37.41 Aligned_cols=75 Identities=12% Similarity=0.052 Sum_probs=44.9
Q ss_pred CCCCCEEEEEccCCChHHHHHH-HHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCeeEEeccccchh-hHHHHH
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLS-RKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNAR-TAEVVI 112 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~-~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~----~~~v~~i~gDi~~~~-~~~~l~ 112 (179)
+++|++|+=.||||.|..-... +..+ ..+|+++|.++.+. --|...+- |..+.+ ..+++.
T Consensus 27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G-------------~~~Vi~vd~~~~kl~~Ak~~GA~~~i-n~~~~~~~~~~~~ 92 (176)
T d1d1ta2 27 VKPGSTCVVFGLGGVGLSVIMGCKSAG-------------ASRIIGIDLNKDKFEKAMAVGATECI-SPKDSTKPISEVL 92 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-------------CSEEEEECSCGGGHHHHHHHTCSEEE-CGGGCSSCHHHHH
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcC-------------CceEEEecCcHHHHHHHHhcCCcEEE-CccccchHHHHHH
Confidence 5899999999999988766544 4433 36899999998531 11322211 222221 223333
Q ss_pred hhcCCCCccEEeeCC
Q 030299 113 RHFDGCKADLVVCDG 127 (179)
Q Consensus 113 ~~~~~~~~D~VlsD~ 127 (179)
+...+.++|+|+-..
T Consensus 93 ~~~~g~G~d~vi~~~ 107 (176)
T d1d1ta2 93 SEMTGNNVGYTFEVI 107 (176)
T ss_dssp HHHHTSCCCEEEECS
T ss_pred HHhccccceEEEEeC
Confidence 334456899887653
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=90.92 E-value=0.5 Score=36.46 Aligned_cols=74 Identities=22% Similarity=0.119 Sum_probs=52.5
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CCCCeeEEeccccchhhHHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~~~~v~~i~gDi~~~~~~~~l 111 (179)
++++||=.|+. |-...++++.+-. .+..|+++|..+.. ..++++++++|++|.+...++
T Consensus 7 ~~KkILVTG~t-GfIGs~lv~~Ll~-----------~g~~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~~l~~~ 74 (356)
T d1rkxa_ 7 QGKRVFVTGHT-GFKGGWLSLWLQT-----------MGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLES 74 (356)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHH-----------TTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHH
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHH-----------CCCEEEEEECCCCccHHHHhhhhcccCCeEEEeeccChHhhhhh
Confidence 46788888755 7777777666532 14789999987642 135899999999998876665
Q ss_pred HhhcCCCCccEEeeCCCC
Q 030299 112 IRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 112 ~~~~~~~~~D~VlsD~~~ 129 (179)
.+. ..+|+|++-++.
T Consensus 75 ~~~---~~~~~v~~~aa~ 89 (356)
T d1rkxa_ 75 IRE---FQPEIVFHMAAQ 89 (356)
T ss_dssp HHH---HCCSEEEECCSC
T ss_pred hhh---chhhhhhhhhcc
Confidence 543 357888886654
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=90.67 E-value=0.45 Score=36.75 Aligned_cols=72 Identities=22% Similarity=0.087 Sum_probs=48.2
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----CCCCCeeEEeccccchhhHHHHHhhcCC
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----APIEGVIQVQGDITNARTAEVVIRHFDG 117 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----~~~~~v~~i~gDi~~~~~~~~l~~~~~~ 117 (179)
++||=.|+ +|-.-.++++++-. .+...|+++|...- ...++++++++|+++.+...+...
T Consensus 1 MKILITG~-tGfiG~~l~~~Ll~----------~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~---- 65 (342)
T d2blla1 1 MRVLILGV-NGFIGNHLTERLLR----------EDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHV---- 65 (342)
T ss_dssp CEEEEETC-SSHHHHHHHHHHHH----------STTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHH----
T ss_pred CEEEEECC-CcHHHHHHHHHHHH----------CCCCEEEEEeCCCcchhhhccCCCeEEEECccCChHHHHHHHH----
Confidence 35666666 88777777766521 01358999998652 235789999999998654333221
Q ss_pred CCccEEeeCCCC
Q 030299 118 CKADLVVCDGAP 129 (179)
Q Consensus 118 ~~~D~VlsD~~~ 129 (179)
..+|.|++-++.
T Consensus 66 ~~~d~Vih~a~~ 77 (342)
T d2blla1 66 KKCDVVLPLVAI 77 (342)
T ss_dssp HHCSEEEECBCC
T ss_pred hCCCcccccccc
Confidence 258999998764
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.70 E-value=0.15 Score=36.39 Aligned_cols=73 Identities=11% Similarity=0.014 Sum_probs=47.9
Q ss_pred CCCCCEEEEEcc-C-CChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCeeEEeccccchhhHHHHH
Q 030299 39 FEGVKRVVDLCA-A-PGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVI 112 (179)
Q Consensus 39 l~~g~~VlDLga-g-pGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~----~~~v~~i~gDi~~~~~~~~l~ 112 (179)
+++|++||-.|| | -|..+..+++.++ .+|++++.++.+. -.|+..+ .|..+.+..+++.
T Consensus 26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~G--------------~~vi~~~~~~~~~~~~~~~Ga~~v-i~~~~~~~~~~i~ 90 (174)
T d1yb5a2 26 VKAGESVLVHGASGGVGLAACQIARAYG--------------LKILGTAGTEEGQKIVLQNGAHEV-FNHREVNYIDKIK 90 (174)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTT--------------CEEEEEESSHHHHHHHHHTTCSEE-EETTSTTHHHHHH
T ss_pred CCCCCEEEEEeccccccccccccccccC--------------cccccccccccccccccccCcccc-cccccccHHHHhh
Confidence 589999999997 3 3334445566654 7899999776320 1243222 3555666667777
Q ss_pred hhcCCCCccEEeeC
Q 030299 113 RHFDGCKADLVVCD 126 (179)
Q Consensus 113 ~~~~~~~~D~VlsD 126 (179)
+...++++|+|+..
T Consensus 91 ~~t~~~g~d~v~d~ 104 (174)
T d1yb5a2 91 KYVGEKGIDIIIEM 104 (174)
T ss_dssp HHHCTTCEEEEEES
T ss_pred hhhccCCceEEeec
Confidence 77777889999863
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.30 E-value=0.27 Score=34.86 Aligned_cols=73 Identities=19% Similarity=0.166 Sum_probs=42.4
Q ss_pred CCCCCEEEEEccCCChHHHH-HHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCeeEE-eccccchh-hHHHH
Q 030299 39 FEGVKRVVDLCAAPGSWSQV-LSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQV-QGDITNAR-TAEVV 111 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~-l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~----~~~v~~i-~gDi~~~~-~~~~l 111 (179)
+++|++|+=+||||.|..-. ++...+ ...|+++|.++.+. --|...+ .-+-.+.. ..+.+
T Consensus 24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G-------------~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~ 90 (171)
T d1pl8a2 24 VTLGHKVLVCGAGPIGMVTLLVAKAMG-------------AAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKV 90 (171)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-------------CSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHH
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHcC-------------CceEEeccCCHHHHHHHHHhCCcccccccccccccccccc
Confidence 48999999999999887554 344444 24899999988421 1133222 22222222 22223
Q ss_pred HhhcCCCCccEEee
Q 030299 112 IRHFDGCKADLVVC 125 (179)
Q Consensus 112 ~~~~~~~~~D~Vls 125 (179)
... .+.++|+|+-
T Consensus 91 ~~~-~g~g~Dvvid 103 (171)
T d1pl8a2 91 EGQ-LGCKPEVTIE 103 (171)
T ss_dssp HHH-HTSCCSEEEE
T ss_pred ccc-CCCCceEEEe
Confidence 222 3467999875
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=89.28 E-value=0.6 Score=36.85 Aligned_cols=74 Identities=16% Similarity=0.151 Sum_probs=48.6
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHHHHH
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEVVI 112 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~~l~ 112 (179)
++||=.|++ |-...++.+.+-. .+...|+++|..... ..++++++++|+++.+...++.
T Consensus 1 MkILItG~t-GfIGs~l~~~L~~----------~g~~vv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~ 69 (361)
T d1kewa_ 1 MKILITGGA-GFIGSAVVRHIIK----------NTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIF 69 (361)
T ss_dssp CEEEEESTT-SHHHHHHHHHHHH----------HCSCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHH
T ss_pred CEEEEECCC-cHHHHHHHHHHHH----------CCCCEEEEEeCCCccccHHHHHhhhhcCCcEEEEccCCCHHHHHHHH
Confidence 356666655 7666666554421 002358899965421 2358999999999998766665
Q ss_pred hhcCCCCccEEeeCCCCC
Q 030299 113 RHFDGCKADLVVCDGAPD 130 (179)
Q Consensus 113 ~~~~~~~~D~VlsD~~~~ 130 (179)
+. ..+|.|++-++..
T Consensus 70 ~~---~~~d~VihlAa~~ 84 (361)
T d1kewa_ 70 EQ---YQPDAVMHLAAES 84 (361)
T ss_dssp HH---HCCSEEEECCSCC
T ss_pred Hh---CCCCEEEECcccc
Confidence 43 3689999988753
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=88.99 E-value=0.32 Score=35.63 Aligned_cols=38 Identities=21% Similarity=0.136 Sum_probs=25.7
Q ss_pred CCEEEEEccCCChH----HHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC
Q 030299 42 VKRVVDLCAAPGSW----SQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (179)
Q Consensus 42 g~~VlDLgagpGg~----s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~ 88 (179)
.-+|+++|||+|.= +..+.+.... .....+|+|.|+++
T Consensus 25 ~lrIwsaGCstGeE~YSlA~~l~e~~~~---------~~~~~~I~atDi~~ 66 (193)
T d1af7a2 25 EYRVWSAAASTGEEPYSIAITLADALGM---------APGRWKVFASDIDT 66 (193)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCS---------CTTSEEEEEEESCH
T ss_pred CeEEEEeCCCCchhHHHHHHHHHHhhhh---------cCCceEEEeecCCh
Confidence 34899999999983 3344444321 01235799999998
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=88.75 E-value=0.31 Score=34.39 Aligned_cols=74 Identities=8% Similarity=-0.042 Sum_probs=42.8
Q ss_pred CCCCCEEEEEccCCChHHH-HHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCeeEEecccc-chhhHHHHH
Q 030299 39 FEGVKRVVDLCAAPGSWSQ-VLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDIT-NARTAEVVI 112 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~-~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~----~~~v~~i~gDi~-~~~~~~~l~ 112 (179)
++||++||=.|||+.|..- .++..++ ...|+++|.++.+. --|...+. |.. +.+...+..
T Consensus 26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G-------------~~~vi~~~~~~~k~~~ak~lGa~~~i-~~~~~~~~~~~~~ 91 (176)
T d2fzwa2 26 LEPGSVCAVFGLGGVGLAVIMGCKVAG-------------ASRIIGVDINKDKFARAKEFGATECI-NPQDFSKPIQEVL 91 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHT-------------CSEEEEECSCGGGHHHHHHHTCSEEE-CGGGCSSCHHHHH
T ss_pred CCCCCEEEEecchhHHHHHHHHHHHHh-------------cCceEEEcccHHHHHHHHHhCCcEEE-eCCchhhHHHHHH
Confidence 5899999999998665544 4555555 36899999887531 01322211 121 112223333
Q ss_pred hhcCCCCccEEeeC
Q 030299 113 RHFDGCKADLVVCD 126 (179)
Q Consensus 113 ~~~~~~~~D~VlsD 126 (179)
+...++++|+|+-.
T Consensus 92 ~~~~~~g~D~vid~ 105 (176)
T d2fzwa2 92 IEMTDGGVDYSFEC 105 (176)
T ss_dssp HHHTTSCBSEEEEC
T ss_pred HHHcCCCCcEeeec
Confidence 33345689999864
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=88.70 E-value=0.3 Score=33.25 Aligned_cols=66 Identities=21% Similarity=0.163 Sum_probs=46.4
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----CCCCeeEEeccccchhhHHHHHhhcCCC
Q 030299 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----PIEGVIQVQGDITNARTAEVVIRHFDGC 118 (179)
Q Consensus 44 ~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----~~~~v~~i~gDi~~~~~~~~l~~~~~~~ 118 (179)
+|+=+|+ |.+.+.+++.+.. .+..|+.+|.+|.. ...++.++.||.++.++.++. .-.
T Consensus 2 ~IvI~G~--G~~G~~la~~L~~-----------~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~----~i~ 64 (132)
T d1lssa_ 2 YIIIAGI--GRVGYTLAKSLSE-----------KGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDA----GIE 64 (132)
T ss_dssp EEEEECC--SHHHHHHHHHHHH-----------TTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHT----TTT
T ss_pred EEEEECC--CHHHHHHHHHHHH-----------CCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhc----Chh
Confidence 5555555 8888888877642 14689999999831 223788999999999875543 334
Q ss_pred CccEEeeC
Q 030299 119 KADLVVCD 126 (179)
Q Consensus 119 ~~D~VlsD 126 (179)
..|.+++-
T Consensus 65 ~a~~vv~~ 72 (132)
T d1lssa_ 65 DADMYIAV 72 (132)
T ss_dssp TCSEEEEC
T ss_pred hhhhhccc
Confidence 68888873
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=88.44 E-value=1.2 Score=34.29 Aligned_cols=71 Identities=17% Similarity=0.091 Sum_probs=49.0
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhHHHHH
Q 030299 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEVVI 112 (179)
Q Consensus 44 ~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~~~l~ 112 (179)
+||=.| |+|-..++++..+-. .+..|+++|...-. ...+++++++|+++.+...++.
T Consensus 2 KiLItG-~tGfIG~~l~~~L~~-----------~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~ 69 (338)
T d1udca_ 2 RVLVTG-GSGYIGSHTCVQLLQ-----------NGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEIL 69 (338)
T ss_dssp EEEEET-TTSHHHHHHHHHHHH-----------TTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHH
T ss_pred EEEEEC-CCCHHHHHHHHHHHH-----------CcCEEEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCCHHHHHHHH
Confidence 444444 678778887776532 14789999964311 1358999999999988766655
Q ss_pred hhcCCCCccEEeeCCCC
Q 030299 113 RHFDGCKADLVVCDGAP 129 (179)
Q Consensus 113 ~~~~~~~~D~VlsD~~~ 129 (179)
+. .++|.|++-++.
T Consensus 70 ~~---~~~d~ViHlAa~ 83 (338)
T d1udca_ 70 HD---HAIDTVIHFAGL 83 (338)
T ss_dssp HH---TTCSEEEECCSC
T ss_pred hc---cCCCEEEECCCc
Confidence 43 468999997764
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=87.82 E-value=0.23 Score=35.33 Aligned_cols=74 Identities=15% Similarity=0.027 Sum_probs=49.8
Q ss_pred CCCCCEEEEEccCC--ChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCeeEEeccccchhhHHHHH
Q 030299 39 FEGVKRVVDLCAAP--GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVI 112 (179)
Q Consensus 39 l~~g~~VlDLgagp--Gg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~----~~~v~~i~gDi~~~~~~~~l~ 112 (179)
++||++||=.|++. |.....+++..+ .+|+++|.++.+. --|+..+ -|..+.+..+++.
T Consensus 26 l~~g~~Vlv~ga~g~vG~~~iqlak~~G--------------a~Vi~~~~s~~k~~~~~~lGa~~v-i~~~~~d~~~~v~ 90 (179)
T d1qora2 26 IKPDEQFLFHAAAGGVGLIACQWAKALG--------------AKLIGTVGTAQKAQSALKAGAWQV-INYREEDLVERLK 90 (179)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHHT--------------CEEEEEESSHHHHHHHHHHTCSEE-EETTTSCHHHHHH
T ss_pred CCCCCEEEEEccccccchHHHHHHHHhC--------------CeEeecccchHHHHHHHhcCCeEE-EECCCCCHHHHHH
Confidence 58999999987765 445666777764 7999999998421 0133222 3556666667777
Q ss_pred hhcCCCCccEEeeCC
Q 030299 113 RHFDGCKADLVVCDG 127 (179)
Q Consensus 113 ~~~~~~~~D~VlsD~ 127 (179)
+...+..+|+|+--.
T Consensus 91 ~~t~g~g~d~v~d~~ 105 (179)
T d1qora2 91 EITGGKKVRVVYDSV 105 (179)
T ss_dssp HHTTTCCEEEEEECS
T ss_pred HHhCCCCeEEEEeCc
Confidence 766677899887644
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=87.63 E-value=1.3 Score=34.53 Aligned_cols=75 Identities=15% Similarity=0.046 Sum_probs=47.9
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------------CCCCCeeEEeccccchhhH
Q 030299 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------------APIEGVIQVQGDITNARTA 108 (179)
Q Consensus 44 ~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------------~~~~~v~~i~gDi~~~~~~ 108 (179)
+||=-|+ +|-.-.++.+++-. .+..|+|+|..+. ...++++++++|++|.+..
T Consensus 3 ~vLITGa-tGfiGs~lv~~Ll~-----------~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~ 70 (357)
T d1db3a_ 3 VALITGV-TGQDGSYLAEFLLE-----------KGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNL 70 (357)
T ss_dssp EEEEETT-TSHHHHHHHHHHHH-----------TTCEEEEECC---------------------CCEEECCCCSSCHHHH
T ss_pred EEEEeCC-CcHHHHHHHHHHHH-----------CcCEEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHH
Confidence 3444454 47666666665532 1478999997431 1135899999999998876
Q ss_pred HHHHhhcCCCCccEEeeCCCCCCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGAPDVTG 133 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~~~~g 133 (179)
+++.+. ..+|.|++-++...-+
T Consensus 71 ~~~~~~---~~~d~v~h~aa~~~~~ 92 (357)
T d1db3a_ 71 TRILRE---VQPDEVYNLGAMSHVA 92 (357)
T ss_dssp HHHHHH---HCCSEEEECCCCCTTT
T ss_pred HHHHhc---cCCCEEEEeecccccc
Confidence 666543 4689999987654433
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.19 E-value=0.59 Score=35.49 Aligned_cols=78 Identities=17% Similarity=0.128 Sum_probs=53.2
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC------CCCCCeeEEeccccchhhHHHHHhh
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------APIEGVIQVQGDITNARTAEVVIRH 114 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~------~~~~~v~~i~gDi~~~~~~~~l~~~ 114 (179)
+|+++|=-|++.|.- ..+++++.. ....|+.+|.++. +.++++.++++|+++.+..+++.+.
T Consensus 5 ~GK~alITGas~GIG-~aia~~la~-----------~Ga~V~i~~r~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~ 72 (250)
T d1ydea1 5 AGKVVVVTGGGRGIG-AGIVRAFVN-----------SGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSE 72 (250)
T ss_dssp TTCEEEEETCSSHHH-HHHHHHHHH-----------TTCEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHH-HHHHHHHHH-----------CCCEEEEEECCHHHHHHHHHhcCCCeEEEccCCCHHHHHHHHHH
Confidence 477888888876644 444444421 2578999998763 1357888999999998866655543
Q ss_pred cCC--CCccEEeeCCCCC
Q 030299 115 FDG--CKADLVVCDGAPD 130 (179)
Q Consensus 115 ~~~--~~~D~VlsD~~~~ 130 (179)
..+ ++.|+++++....
T Consensus 73 ~~~~~g~iDilVnnAG~~ 90 (250)
T d1ydea1 73 TIRRFGRLDCVVNNAGHH 90 (250)
T ss_dssp HHHHHSCCCEEEECCCCC
T ss_pred HHHhcCCCCEEEeccccc
Confidence 221 3699999988643
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.51 E-value=1.1 Score=33.50 Aligned_cols=77 Identities=13% Similarity=0.154 Sum_probs=51.6
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCeeEEeccccchhhHHHHHhhcCC--C
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDG--C 118 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~~~~v~~i~gDi~~~~~~~~l~~~~~~--~ 118 (179)
+|+++|=-|++.|.- ..+++++.. .+..|+.+|.+... ..++..+++|+++.+..+++.+...+ +
T Consensus 6 ~gK~~lITGas~GIG-~aia~~la~-----------~Ga~V~~~~r~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 72 (237)
T d1uzma1 6 VSRSVLVTGGNRGIG-LAIAQRLAA-----------DGHKVAVTHRGSGA-PKGLFGVEVDVTDSDAVDRAFTAVEEHQG 72 (237)
T ss_dssp CCCEEEETTTTSHHH-HHHHHHHHH-----------TTCEEEEEESSSCC-CTTSEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHH-HHHHHHHHH-----------CCCEEEEEECCcch-hcCceEEEEecCCHHHHHHHHHHHHHhcC
Confidence 367788888776644 444444321 25799999987644 46778899999998765555443221 3
Q ss_pred CccEEeeCCCCC
Q 030299 119 KADLVVCDGAPD 130 (179)
Q Consensus 119 ~~D~VlsD~~~~ 130 (179)
+.|+++++.+..
T Consensus 73 ~iDiLVnnAG~~ 84 (237)
T d1uzma1 73 PVEVLVSNAGLS 84 (237)
T ss_dssp SCSEEEEECSCC
T ss_pred CceEEEeeeccc
Confidence 699999987543
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=86.39 E-value=1.4 Score=33.25 Aligned_cols=73 Identities=14% Similarity=0.059 Sum_probs=49.6
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeC-CCCC---------CCCCeeEEeccccchhhHHHHHh
Q 030299 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDL-QPMA---------PIEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 44 ~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~-~~~~---------~~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
+||=.| |+|-.-.++.+.+-. .+..|+++|. ++-. ...+++++++|+++.+...++.+
T Consensus 2 KILVTG-atGfIGs~lv~~Ll~-----------~g~~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~ 69 (338)
T d1orra_ 2 KLLITG-GCGFLGSNLASFALS-----------QGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLIT 69 (338)
T ss_dssp EEEEET-TTSHHHHHHHHHHHH-----------TTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHH
T ss_pred EEEEEC-CCcHHHHHHHHHHHH-----------CcCEEEEEECCCcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHH
Confidence 455334 568777777666531 1578999984 3321 24689999999999877666554
Q ss_pred hcCCCCccEEeeCCCCCC
Q 030299 114 HFDGCKADLVVCDGAPDV 131 (179)
Q Consensus 114 ~~~~~~~D~VlsD~~~~~ 131 (179)
. .++|.|++-+++..
T Consensus 70 ~---~~~d~Vih~aa~~~ 84 (338)
T d1orra_ 70 K---YMPDSCFHLAGQVA 84 (338)
T ss_dssp H---HCCSEEEECCCCCC
T ss_pred h---cCCceEEeeccccc
Confidence 3 36899999887644
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.94 E-value=2.4 Score=31.76 Aligned_cols=82 Identities=12% Similarity=-0.077 Sum_probs=54.4
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~~ 110 (179)
.|+++|=-||+.|.-...+.+... .+..|+.+|.++.. ...++..+.+|+++.+..++
T Consensus 6 ~Gkv~lITGas~GIG~~ia~~la~------------~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~ 73 (244)
T d1yb1a_ 6 TGEIVLITGAGHGIGRLTAYEFAK------------LKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYS 73 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHH------------TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHH------------CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHH
Confidence 467788778887765444433322 25789999998731 23468889999999986665
Q ss_pred HHhhc--CCCCccEEeeCCCCCCCCC
Q 030299 111 VIRHF--DGCKADLVVCDGAPDVTGL 134 (179)
Q Consensus 111 l~~~~--~~~~~D~VlsD~~~~~~g~ 134 (179)
+.+.. .-+.+|+++++......+.
T Consensus 74 ~~~~i~~~~g~idilinnag~~~~~~ 99 (244)
T d1yb1a_ 74 SAKKVKAEIGDVSILVNNAGVVYTSD 99 (244)
T ss_dssp HHHHHHHHTCCCSEEEECCCCCCCCC
T ss_pred HHHHHHHHcCCCceeEeecccccccc
Confidence 55432 1246999999887554443
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.15 E-value=2 Score=32.32 Aligned_cols=79 Identities=11% Similarity=0.045 Sum_probs=51.6
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchhhH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNARTA 108 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~~~ 108 (179)
+|++||=-||+.|.-.. +++++.. .+..|+.+|.++.+ .. ..+.++++|+++.+..
T Consensus 9 k~Kv~lITGas~GIG~a-iA~~la~-----------~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v 76 (257)
T d1xg5a_ 9 RDRLALVTGASGGIGAA-VARALVQ-----------QGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDI 76 (257)
T ss_dssp TTCEEEEESTTSHHHHH-HHHHHHH-----------TTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHH
T ss_pred CCCEEEEeCCCCHHHHH-HHHHHHH-----------CCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHH
Confidence 36788888988665444 4444421 25789999988631 12 2577889999998865
Q ss_pred HHHHhhcC--CCCccEEeeCCCCCC
Q 030299 109 EVVIRHFD--GCKADLVVCDGAPDV 131 (179)
Q Consensus 109 ~~l~~~~~--~~~~D~VlsD~~~~~ 131 (179)
+++.+... -+..|+++++.....
T Consensus 77 ~~~v~~~~~~~g~iD~lVnnAg~~~ 101 (257)
T d1xg5a_ 77 LSMFSAIRSQHSGVDICINNAGLAR 101 (257)
T ss_dssp HHHHHHHHHHHCCCSEEEECCCCCC
T ss_pred HHHHHHHHHhcCCCCEEEecccccC
Confidence 55444321 136999999886544
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=84.75 E-value=0.68 Score=31.18 Aligned_cols=61 Identities=16% Similarity=0.015 Sum_probs=44.6
Q ss_pred cCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCeeEEeccccchhhHHHHHhhcCCCCccEEee
Q 030299 50 AAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVC 125 (179)
Q Consensus 50 agpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----~~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~Vls 125 (179)
||-|..++.+++.+. +..|+.+|..+.. ...|+.++.||.++.+.+++ ..-...+.+++
T Consensus 6 ~G~g~~g~~l~~~L~-------------~~~i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~----a~i~~A~~vi~ 68 (129)
T d2fy8a1 6 CGWSESTLECLRELR-------------GSEVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEK----ANVRGARAVIV 68 (129)
T ss_dssp ESCCHHHHHHHHTSC-------------GGGEEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHH----TTCTTCSEEEE
T ss_pred ECCCHHHHHHHHHHc-------------CCCCEEEEcchHHHHHHHhcCccccccccCCHHHHHH----hhhhcCcEEEE
Confidence 577889999999875 3457788988852 23689999999999876544 23346788887
Q ss_pred CC
Q 030299 126 DG 127 (179)
Q Consensus 126 D~ 127 (179)
..
T Consensus 69 ~~ 70 (129)
T d2fy8a1 69 NL 70 (129)
T ss_dssp CC
T ss_pred ec
Confidence 54
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=84.71 E-value=2.5 Score=31.51 Aligned_cols=81 Identities=17% Similarity=0.126 Sum_probs=52.2
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------CCCCeeEEeccccchhhHHHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIEGVIQVQGDITNARTAEVVI 112 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------~~~~v~~i~gDi~~~~~~~~l~ 112 (179)
+|+++|=-|++.| .-..+++++.. .+..|+.+|.++.+ .-..+.++++|+++.+..+++.
T Consensus 4 ~gKvalVTGas~G-IG~aia~~la~-----------~Ga~V~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~ 71 (247)
T d2ew8a1 4 KDKLAVITGGANG-IGRAIAERFAV-----------EGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFG 71 (247)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHH-----------TTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHH-----------CCCEEEEEECCchHHHHHHHHHcCCcEEEEEeeCCCHHHHHHHH
Confidence 3567777787655 44444444432 25789999988742 1235778899999988665554
Q ss_pred hhcC--CCCccEEeeCCCCCCCC
Q 030299 113 RHFD--GCKADLVVCDGAPDVTG 133 (179)
Q Consensus 113 ~~~~--~~~~D~VlsD~~~~~~g 133 (179)
+... -+++|+++.+......+
T Consensus 72 ~~~~~~~G~iDilVnnAG~~~~~ 94 (247)
T d2ew8a1 72 KQVISTFGRCDILVNNAGIYPLI 94 (247)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCC
T ss_pred HHHHHHcCCCCEEEECCCCCCCC
Confidence 4321 13799999987654433
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=84.68 E-value=1.2 Score=31.26 Aligned_cols=74 Identities=9% Similarity=-0.005 Sum_probs=45.7
Q ss_pred CCCCCCEEEEEccCCChHHH-HHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----CCCCeeEEeccccchhhHHHH
Q 030299 38 IFEGVKRVVDLCAAPGSWSQ-VLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----PIEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 38 ll~~g~~VlDLgagpGg~s~-~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----~~~~v~~i~gDi~~~~~~~~l 111 (179)
.++||++||=.||||.|..- .++...+ ...|+++|.++.+ ..-...++..+ + +..++.
T Consensus 29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g-------------~~~vv~~~~~~~k~~~~~~~ga~~~i~~~--~-~~~~~~ 92 (172)
T d1h2ba2 29 TLYPGAYVAIVGVGGLGHIAVQLLKVMT-------------PATVIALDVKEEKLKLAERLGADHVVDAR--R-DPVKQV 92 (172)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHC-------------CCEEEEEESSHHHHHHHHHTTCSEEEETT--S-CHHHHH
T ss_pred ccCCCCEEEEeCCChHHHHHHHHHHhhc-------------CcccccccchhHHHHHHhhcccceeecCc--c-cHHHHH
Confidence 46899999999999887764 4455555 3689999998742 12122333222 2 233344
Q ss_pred HhhcCCCCccEEeeCC
Q 030299 112 IRHFDGCKADLVVCDG 127 (179)
Q Consensus 112 ~~~~~~~~~D~VlsD~ 127 (179)
.+...+.++|+|+-..
T Consensus 93 ~~~~~~~g~d~vid~~ 108 (172)
T d1h2ba2 93 MELTRGRGVNVAMDFV 108 (172)
T ss_dssp HHHTTTCCEEEEEESS
T ss_pred HHhhCCCCceEEEEec
Confidence 4445566799888543
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=84.63 E-value=1.9 Score=32.39 Aligned_cols=81 Identities=9% Similarity=-0.007 Sum_probs=51.7
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CCCCCeeEEeccccchhhHHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~~~~~v~~i~gDi~~~~~~~~l 111 (179)
+|+++|=-|++.| .-..+++++.. .+..|+.+|.++. ....++.++++|+++.+..+++
T Consensus 5 ~gK~alVTGas~G-IG~aia~~la~-----------~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~ 72 (251)
T d1zk4a1 5 DGKVAIITGGTLG-IGLAIATKFVE-----------EGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKL 72 (251)
T ss_dssp TTCEEEETTTTSH-HHHHHHHHHHH-----------TTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHH-----------CCCEEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHH
Confidence 3667777786665 44444444421 2578999998762 1234688999999998765554
Q ss_pred HhhcC--CCCccEEeeCCCCCCCC
Q 030299 112 IRHFD--GCKADLVVCDGAPDVTG 133 (179)
Q Consensus 112 ~~~~~--~~~~D~VlsD~~~~~~g 133 (179)
.+... -+++|+++.+......+
T Consensus 73 ~~~~~~~~G~iDiLVnnAg~~~~~ 96 (251)
T d1zk4a1 73 FDATEKAFGPVSTLVNNAGIAVNK 96 (251)
T ss_dssp HHHHHHHHSSCCEEEECCCCCCCC
T ss_pred HHHHHHHhCCceEEEecccccccc
Confidence 44321 13799999988655444
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=84.52 E-value=0.6 Score=38.32 Aligned_cols=38 Identities=16% Similarity=0.037 Sum_probs=31.7
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~ 88 (179)
+++..++|+||--|.++..++...+. ...+|+|++++|
T Consensus 211 ~kn~vfIDVGAniG~~s~~f~~~~~~-----------~~~kV~aFEP~p 248 (395)
T d2py6a1 211 SDSEKMVDCGASIGESLAGLIGVTKG-----------KFERVWMIEPDR 248 (395)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTS-----------CCSEEEEECCCH
T ss_pred CCCCEEEECCcCCCHHHHHHHHhcCC-----------CCCEEEEEeCCH
Confidence 56789999999999999988877652 246899999998
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=84.19 E-value=1.2 Score=33.47 Aligned_cols=79 Identities=19% Similarity=0.038 Sum_probs=51.6
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----CCCCeeEEeccccchhhHHHHHhhc
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----PIEGVIQVQGDITNARTAEVVIRHF 115 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----~~~~v~~i~gDi~~~~~~~~l~~~~ 115 (179)
+|+++|=-|++.|.- ..+++++.. .+.+|+.+|.++.. .-.++.++++|+++.+..+++.+..
T Consensus 4 ~gK~~lITGas~GIG-~aia~~l~~-----------~G~~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 71 (242)
T d1ulsa_ 4 KDKAVLITGAAHGIG-RATLELFAK-----------EGARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEA 71 (242)
T ss_dssp TTCEEEEESTTSHHH-HHHHHHHHH-----------TTCEEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHH-HHHHHHHHH-----------CCCEEEEEECCHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHH
Confidence 467788888876644 444444321 25799999988631 1236788999999988665554432
Q ss_pred CC--CCccEEeeCCCCCC
Q 030299 116 DG--CKADLVVCDGAPDV 131 (179)
Q Consensus 116 ~~--~~~D~VlsD~~~~~ 131 (179)
.+ +++|+++++.....
T Consensus 72 ~~~~g~iDilVnnAG~~~ 89 (242)
T d1ulsa_ 72 LAHLGRLDGVVHYAGITR 89 (242)
T ss_dssp HHHHSSCCEEEECCCCCC
T ss_pred HHhcCCceEEEECCcccc
Confidence 11 36999999876443
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=83.84 E-value=6.8 Score=29.19 Aligned_cols=79 Identities=8% Similarity=-0.020 Sum_probs=51.8
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~~ 110 (179)
+|++||=.||+.| .-..+++++.. ....|+.+|.++.. ....+.++.+|+++.+..++
T Consensus 5 ~gK~alITGas~G-IG~aia~~la~-----------~G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~ 72 (258)
T d1ae1a_ 5 KGTTALVTGGSKG-IGYAIVEELAG-----------LGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDK 72 (258)
T ss_dssp TTCEEEEESCSSH-HHHHHHHHHHH-----------TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHH-----------CCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHH
Confidence 6788888898755 43434444321 15789999988631 12467788999999887655
Q ss_pred HHhhcC---CCCccEEeeCCCCCC
Q 030299 111 VIRHFD---GCKADLVVCDGAPDV 131 (179)
Q Consensus 111 l~~~~~---~~~~D~VlsD~~~~~ 131 (179)
+.+... ++..|++++......
T Consensus 73 ~~~~~~~~~~g~idilinnag~~~ 96 (258)
T d1ae1a_ 73 LMQTVAHVFDGKLNILVNNAGVVI 96 (258)
T ss_dssp HHHHHHHHTTSCCCEEEECCCCCC
T ss_pred HHHHHHHHhCCCcEEEeccccccc
Confidence 544321 347899998775433
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=83.02 E-value=2.1 Score=32.27 Aligned_cols=81 Identities=15% Similarity=0.013 Sum_probs=52.8
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CC-CCeeEEeccccchhhHHHHHh
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI-EGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~-~~v~~i~gDi~~~~~~~~l~~ 113 (179)
+|+++|=-|++.|.-.. +++++.. .+.+|+.+|.++.+ .+ ..+.++++|+++.+..+++.+
T Consensus 4 ~gK~alVTGas~GIG~a-ia~~la~-----------~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 71 (254)
T d1hdca_ 4 SGKTVIITGGARGLGAE-AARQAVA-----------AGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVA 71 (254)
T ss_dssp CCSEEEEETTTSHHHHH-HHHHHHH-----------TTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCcCCHHHHH-HHHHHHH-----------CCCEEEEEECCHHHHHHHHHHhCCceEEEEcccCCHHHHHHHHH
Confidence 47788888988764433 3443321 15789999987631 12 357889999999876655554
Q ss_pred hcC--CCCccEEeeCCCCCCCC
Q 030299 114 HFD--GCKADLVVCDGAPDVTG 133 (179)
Q Consensus 114 ~~~--~~~~D~VlsD~~~~~~g 133 (179)
... -+++|+++.+......+
T Consensus 72 ~~~~~~g~iDilVnnAg~~~~~ 93 (254)
T d1hdca_ 72 YAREEFGSVDGLVNNAGISTGM 93 (254)
T ss_dssp HHHHHHSCCCEEEECCCCCCCS
T ss_pred HHHHHcCCccEEEecCcccccc
Confidence 321 13699999987654433
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.98 E-value=0.65 Score=32.72 Aligned_cols=41 Identities=10% Similarity=-0.091 Sum_probs=29.5
Q ss_pred HhCCCCCCCEEEEEccCCChH-HHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC
Q 030299 35 EFNIFEGVKRVVDLCAAPGSW-SQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA 90 (179)
Q Consensus 35 ~~~ll~~g~~VlDLgagpGg~-s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~ 90 (179)
+.+ ++||++||-+|+||-|. +..+++..+ .+|+++|.++.+
T Consensus 22 ~~~-~~~g~~vlI~GaG~vG~~a~q~ak~~G--------------~~vi~~~~~~~k 63 (168)
T d1piwa2 22 RNG-CGPGKKVGIVGLGGIGSMGTLISKAMG--------------AETYVISRSSRK 63 (168)
T ss_dssp HTT-CSTTCEEEEECCSHHHHHHHHHHHHHT--------------CEEEEEESSSTT
T ss_pred HhC-cCCCCEEEEECCCCcchhHHHHhhhcc--------------ccccccccchhH
Confidence 344 48999999999985444 444555554 799999999863
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=82.94 E-value=1.4 Score=33.35 Aligned_cols=78 Identities=13% Similarity=0.024 Sum_probs=51.0
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CCCCeeEEeccccchhhHHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~~~~v~~i~gDi~~~~~~~~l 111 (179)
+|+++|=-|++.|. -..+++++.. .+.+|+.+|.++.. ....+.++++|+++.+..+++
T Consensus 5 ~gKvalITGas~GI-G~aia~~la~-----------~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~ 72 (268)
T d2bgka1 5 QDKVAIITGGAGGI-GETTAKLFVR-----------YGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNL 72 (268)
T ss_dssp TTCEEEEESTTSHH-HHHHHHHHHH-----------TTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHH
T ss_pred CCCEEEEeCCCcHH-HHHHHHHHHH-----------CCCEEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHH
Confidence 46788888977664 4444444421 25799999987621 234577889999998765555
Q ss_pred HhhcC--CCCccEEeeCCCCC
Q 030299 112 IRHFD--GCKADLVVCDGAPD 130 (179)
Q Consensus 112 ~~~~~--~~~~D~VlsD~~~~ 130 (179)
.+... -+.+|+++.+....
T Consensus 73 ~~~~~~~~g~iD~lVnnAG~~ 93 (268)
T d2bgka1 73 VDTTIAKHGKLDIMFGNVGVL 93 (268)
T ss_dssp HHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHcCCcceeccccccc
Confidence 43221 13799999987643
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=81.50 E-value=1 Score=31.81 Aligned_cols=72 Identities=11% Similarity=0.087 Sum_probs=45.3
Q ss_pred CCCCCEEEEEccCCChHHH-HHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCe-eEEeccccchhhHHHHH
Q 030299 39 FEGVKRVVDLCAAPGSWSQ-VLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGV-IQVQGDITNARTAEVVI 112 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~-~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~----~~~v-~~i~gDi~~~~~~~~l~ 112 (179)
++||++||=+||||-|.+. .+++..+ ...|+.+|.++.+. --|. .++ |..+.+..+++.
T Consensus 26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g-------------~~~v~~~~~~~~k~~~a~~~Ga~~~i--~~~~~~~~~~i~ 90 (174)
T d1f8fa2 26 VTPASSFVTWGAGAVGLSALLAAKVCG-------------ASIIIAVDIVESRLELAKQLGATHVI--NSKTQDPVAAIK 90 (174)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHT-------------CSEEEEEESCHHHHHHHHHHTCSEEE--ETTTSCHHHHHH
T ss_pred CCCCCEEEEeCCCHHHhhhhhcccccc-------------cceeeeeccHHHHHHHHHHcCCeEEE--eCCCcCHHHHHH
Confidence 4899999999998877544 4455555 35788889887420 1132 233 334444556666
Q ss_pred hhcCCCCccEEeeC
Q 030299 113 RHFDGCKADLVVCD 126 (179)
Q Consensus 113 ~~~~~~~~D~VlsD 126 (179)
+..+ +++|+|+-.
T Consensus 91 ~~t~-gg~D~vid~ 103 (174)
T d1f8fa2 91 EITD-GGVNFALES 103 (174)
T ss_dssp HHTT-SCEEEEEEC
T ss_pred HHcC-CCCcEEEEc
Confidence 6544 489998853
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=81.36 E-value=0.85 Score=31.49 Aligned_cols=67 Identities=7% Similarity=-0.045 Sum_probs=45.2
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------CCCCeeEEeccccchhhHHHHHhhc
Q 030299 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIEGVIQVQGDITNARTAEVVIRHF 115 (179)
Q Consensus 44 ~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------~~~~v~~i~gDi~~~~~~~~l~~~~ 115 (179)
.|+=+| -|..++.+++.+.. .+..|+.+|..|.. ..+++.++.||.+++++.++.
T Consensus 5 HiII~G--~g~~g~~l~~~L~~-----------~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a---- 67 (153)
T d1id1a_ 5 HFIVCG--HSILAINTILQLNQ-----------RGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKA---- 67 (153)
T ss_dssp CEEEEC--CSHHHHHHHHHHHH-----------TTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHH----
T ss_pred EEEEEC--CCHHHHHHHHHHHH-----------cCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHh----
Confidence 444444 46788888776632 14578889988731 136899999999998875443
Q ss_pred CCCCccEEeeCC
Q 030299 116 DGCKADLVVCDG 127 (179)
Q Consensus 116 ~~~~~D~VlsD~ 127 (179)
.-...|.|++-.
T Consensus 68 ~i~~a~~vi~~~ 79 (153)
T d1id1a_ 68 GIDRCRAILALS 79 (153)
T ss_dssp TTTTCSEEEECS
T ss_pred ccccCCEEEEcc
Confidence 334688888754
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.27 E-value=2.2 Score=32.06 Aligned_cols=79 Identities=13% Similarity=-0.014 Sum_probs=51.1
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-------CCCCeeEEeccccchhhHHHHHh
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------PIEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-------~~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
+|+++|=-|++.|. -..+++++.. ....|+.+|.++.+ ....+.++++|+++.+..+++.+
T Consensus 5 ~gK~alITGas~GI-G~aia~~la~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 72 (244)
T d1nffa_ 5 TGKVALVSGGARGM-GASHVRAMVA-----------EGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVD 72 (244)
T ss_dssp TTCEEEEETTTSHH-HHHHHHHHHH-----------TTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCCHH-HHHHHHHHHH-----------CCCEEEEEECCHHHHHHHHHHhhCcceEEEeecCCHHHHHHHHH
Confidence 36677877887664 4434444321 25789999988731 12457788999999876555554
Q ss_pred hcCC--CCccEEeeCCCCCC
Q 030299 114 HFDG--CKADLVVCDGAPDV 131 (179)
Q Consensus 114 ~~~~--~~~D~VlsD~~~~~ 131 (179)
...+ +++|+++.+.....
T Consensus 73 ~~~~~~g~idilinnAG~~~ 92 (244)
T d1nffa_ 73 TAVTAFGGLHVLVNNAGILN 92 (244)
T ss_dssp HHHHHHSCCCEEEECCCCCC
T ss_pred HHHHHhCCCeEEEECCcccC
Confidence 3221 36999999876543
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=81.06 E-value=4.5 Score=30.96 Aligned_cols=75 Identities=15% Similarity=-0.045 Sum_probs=52.8
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCeeEEeccccchhhHHHHHhh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIRH 114 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~----~~~v~~i~gDi~~~~~~~~l~~~ 114 (179)
+...++||=.| |+|-...++..++-. .+..|+++|..+... ..+..+..+|+++.+...++.
T Consensus 12 ~~~nMKILVTG-gsGfIGs~lv~~L~~-----------~g~~V~~~d~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~-- 77 (363)
T d2c5aa1 12 PSENLKISITG-AGGFIASHIARRLKH-----------EGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVT-- 77 (363)
T ss_dssp TTSCCEEEEET-TTSHHHHHHHHHHHH-----------TTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHH--
T ss_pred CCCCCEEEEEC-CCCHHHHHHHHHHHH-----------CcCEEEEEeCCCccchhhhcccCcEEEeechhHHHHHHHh--
Confidence 45688999777 788887877666532 146899999876532 456788899999876543332
Q ss_pred cCCCCccEEeeCCCCC
Q 030299 115 FDGCKADLVVCDGAPD 130 (179)
Q Consensus 115 ~~~~~~D~VlsD~~~~ 130 (179)
..+|.|++-++..
T Consensus 78 ---~~~d~Vih~a~~~ 90 (363)
T d2c5aa1 78 ---EGVDHVFNLAADM 90 (363)
T ss_dssp ---TTCSEEEECCCCC
T ss_pred ---hcCCeEeeccccc
Confidence 3689999876543
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.64 E-value=2.7 Score=31.39 Aligned_cols=79 Identities=15% Similarity=0.156 Sum_probs=51.6
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC----------CC--CCCeeEEeccccchhhH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM----------AP--IEGVIQVQGDITNARTA 108 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~----------~~--~~~v~~i~gDi~~~~~~ 108 (179)
.|+++|=-|++.| .-..+++++.. .+..|+.+|.++. +. ..++.++++|+++.+..
T Consensus 2 ~GKvalITGas~G-IG~aia~~la~-----------~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v 69 (254)
T d2gdza1 2 NGKVALVTGAAQG-IGRAFAEALLL-----------KGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQL 69 (254)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHH-----------TTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHH-----------CCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHH
Confidence 4677888888755 44445554432 2578999998762 11 23578889999998765
Q ss_pred HHHHhhcC--CCCccEEeeCCCCCC
Q 030299 109 EVVIRHFD--GCKADLVVCDGAPDV 131 (179)
Q Consensus 109 ~~l~~~~~--~~~~D~VlsD~~~~~ 131 (179)
+++.+... -+++|+++.+.....
T Consensus 70 ~~~~~~~~~~~G~iDilVnnAg~~~ 94 (254)
T d2gdza1 70 RDTFRKVVDHFGRLDILVNNAGVNN 94 (254)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred HHHHHHHHHHcCCcCeecccccccc
Confidence 55554321 137999999886543
|