Citrus Sinensis ID: 030310

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEVIC
Secondary Structure (PSIPRED)
ccccHHHHHHccccccccccccccccccccccccEEEcccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHcccccccccccccccccccccccEEEEEcccccccccccccccEEEEcccccccccEEEEEEEcccccccccccHHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHccccccccccccccccccccccccEEEEEHcccccHHccccHHHHHHHHHHHHHHHHHHccccHHHHHcccccHcccccccccccEEcccccEEEEEccccccccccccccEEEEEEccccccccEEEEEEccccccHHccccHHHHHHHHHHHHcHHHcccccccEEEc
Coil and Loop (DISEMBL)
mastqcflhhhalsttpartsssqrhvsnikptQIVCRAQkqavqeddgsAVSRRLALTVLIGAAavgskvspadaaygesanvfgkpktntdflpyngdgfklsipskwnpskerefpgqvlryednfdsnsnvsviitptdkksitdygspeefLSKVDYLLgkqaysgktssevic
Flexible Loop (DISEMBL)
mastqcflhhhalsttpartsssqrhVSNIKPTQIVCRAQKqavqeddgsAVSRRLALTVLIGAAAVGSKVSPADAAYGesanvfgkpktnTDFLPYNGDGFklsipskwnpsKEREFPGQVLRyednfdsnsnvsviitptdkksitdygspEEFLSKVDYLLGKqaysgktssevic
Low Complexity Region (SEG)
MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEVIC
Disordered region (IsUnstruct)
**********************************IVC**************VSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSI***************VLRYE**F****NVSVIITPT****ITDYG**EEFLSKVDYLLG**************
Disordered Region (DISOPRED)
*ASTQCFLHH**********************************************ALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVII**********YGSPEEFLSKVDYLLGKQAYSGKTSSEVIC
Disordered Region (DISEMBL)
MASTQCFLHHHAL***************NIKPTQIVCRA************VSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAY**********
Disordered Region (DISPRO)
******************************KPTQIVCRAQKQAV*****SAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEVIC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEVIC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	179	2.2.26 [Sep-21-2011]
Q9SLQ8	263	Oxygen-evolving enhancer	N/A	no	0.977	0.665	0.814	6e-79
Q7DM39	268	Oxygen-evolving enhancer	N/A	no	0.983	0.656	0.791	2e-77
P12302	267	Oxygen-evolving enhancer	N/A	no	0.983	0.659	0.756	7e-76
P93566	260	Oxygen-evolving enhancer	N/A	no	0.955	0.657	0.784	7e-76
P29795	258	Oxygen-evolving enhancer	N/A	no	0.932	0.647	0.786	2e-75
P16059	259	Oxygen-evolving enhancer	N/A	no	0.966	0.667	0.778	5e-75
P18212	265	Oxygen-evolving enhancer	N/A	no	0.977	0.660	0.783	2e-74
Q04127	266	Oxygen-evolving enhancer	N/A	no	0.977	0.657	0.756	2e-72
O49080	264	Oxygen-evolving enhancer	N/A	no	0.977	0.662	0.743	4e-72
Q42029	263	Oxygen-evolving enhancer	yes	no	0.972	0.661	0.748	2e-71

>sp|Q9SLQ8|PSBP_CUCSA Oxygen-evolving enhancer protein 2, chloroplastic OS=Cucumis sativus GN=PSBP PE=2 SV=1

 Score =  293 bits (749), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 145/178 (81%), Positives = 158/178 (88%), Gaps = 3/178 (1%)

Query: 1   MASTQCFLHHHALSTTPARTSSSQRHVSNIK-PTQIVCRAQKQA-VQEDDGSAVSRRLAL 58
           MAST CFLHHHAL T  AR+SSS R  +  K P  +VCRAQKQ   QE++G  VSRRLAL
Sbjct: 1   MASTSCFLHHHAL-TAAARSSSSPRQAALPKSPQLLVCRAQKQQPAQEEEGGVVSRRLAL 59

Query: 59  TVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREF 118
           TVLIGAAA+GSKVSPADAAYGE+ANVFGKPK+NTD+LPY+GDGFKLSIPSKWNPSKEREF
Sbjct: 60  TVLIGAAALGSKVSPADAAYGEAANVFGKPKSNTDYLPYSGDGFKLSIPSKWNPSKEREF 119

Query: 119 PGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSE 176
           PGQVLRYEDNFDSNSN+SVII PTDKKSI D+GSPEEFLSKVDYLLGKQAY GKT+SE
Sbjct: 120 PGQVLRYEDNFDSNSNLSVIINPTDKKSIKDFGSPEEFLSKVDYLLGKQAYFGKTASE 177

May be involved in the regulation of photosystem II.
Cucumis sativus (taxid: 3659)

>sp|Q7DM39|PSBP1_TOBAC Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Nicotiana tabacum GN=PSBP1 PE=3 SV=2

 Score =  287 bits (735), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 144/182 (79%), Positives = 163/182 (89%), Gaps = 6/182 (3%)

Query: 1   MASTQCFLHHHALSTTPARTS---SSQRHVSNIKPTQIVCRAQKQAV-QEDDGSAV--SR 54
           MASTQCFLH HALS++ ART+   SSQR+VS++KP Q+VCRAQKQ+  QEDDG++V  SR
Sbjct: 1   MASTQCFLHQHALSSSAARTTSSVSSQRYVSSLKPNQLVCRAQKQSSPQEDDGNSVVVSR 60

Query: 55  RLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSK 114
           RLALTVLIGAAA+GSKVSPADAAYGE+ANVFGKPK NTDFL YNGDGFKL +P+KWNPSK
Sbjct: 61  RLALTVLIGAAAIGSKVSPADAAYGEAANVFGKPKENTDFLAYNGDGFKLQVPAKWNPSK 120

Query: 115 EREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTS 174
           E EFPGQVLRYEDNFDS SN+ V +TPTDKKSITDYGSPEEFL++VD+LLGKQAY GKT 
Sbjct: 121 EVEFPGQVLRYEDNFDSTSNLIVTVTPTDKKSITDYGSPEEFLTQVDFLLGKQAYFGKTD 180

Query: 175 SE 176
           SE
Sbjct: 181 SE 182

May be involved in the regulation of photosystem II.

Nicotiana tabacum (taxid: 4097)

>sp|P12302|PSBP_SPIOL Oxygen-evolving enhancer protein 2, chloroplastic OS=Spinacia oleracea GN=PSBP PE=1 SV=1

 Score =  282 bits (722), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 137/181 (75%), Positives = 158/181 (87%), Gaps = 5/181 (2%)

Query: 1   MASTQCFLHHHALSTTPA--RTSSSQRHVS-NIKPTQIVCRAQKQAVQEDD--GSAVSRR 55
           MAST CFLHHHA  ++PA  R S++QR+ + +IKP QIVC+AQKQ   E +   S VSRR
Sbjct: 1   MASTACFLHHHAAISSPAAGRGSAAQRYQAVSIKPNQIVCKAQKQDDNEANVLNSGVSRR 60

Query: 56  LALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKE 115
           LALTVLIGAAAVGSKVSPADAAYGE+ANVFGKPK NT+F+PYNGDGFKL +PSKWNPSKE
Sbjct: 61  LALTVLIGAAAVGSKVSPADAAYGEAANVFGKPKKNTEFMPYNGDGFKLLVPSKWNPSKE 120

Query: 116 REFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSS 175
           +EFPGQVLRYEDNFD+ SN+SV++ PTDKKSITD+GSPE+FLS+VDYLLGKQAY GKT S
Sbjct: 121 KEFPGQVLRYEDNFDATSNLSVLVQPTDKKSITDFGSPEDFLSQVDYLLGKQAYFGKTDS 180

Query: 176 E 176
           E
Sbjct: 181 E 181

May be involved in the regulation of photosystem II.

Spinacia oleracea (taxid: 3562)

>sp|P93566|PSBP_SOLTU Oxygen-evolving enhancer protein 2, chloroplastic OS=Solanum tuberosum GN=PSBP PE=2 SV=1

 Score =  282 bits (722), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 138/176 (78%), Positives = 152/176 (86%), Gaps = 5/176 (2%)

Query: 2   ASTQCFLH-HHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTV 60
           ASTQCFLH +HAL ++PARTSS    V + KP Q++CRAQKQ    +  +AVSRRLALT+
Sbjct: 3   ASTQCFLHQYHALRSSPARTSS----VPSPKPNQLICRAQKQDDANNTSNAVSRRLALTL 58

Query: 61  LIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPG 120
           LIG AA+GSKVSPADAAYGE+ANVFGKPK NTDFLPYNGDGFKL IP+KWNPSKE EFPG
Sbjct: 59  LIGTAAIGSKVSPADAAYGEAANVFGKPKENTDFLPYNGDGFKLQIPAKWNPSKEIEFPG 118

Query: 121 QVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSE 176
           QVLRYEDNFDS SN+ V +TPTDKKSITDYGSPEEFLSKVDYLLGKQAY GKT SE
Sbjct: 119 QVLRYEDNFDSTSNLMVAVTPTDKKSITDYGSPEEFLSKVDYLLGKQAYFGKTDSE 174

May be involved in the regulation of photosystem II.

Solanum tuberosum (taxid: 4113)

>sp|P29795|PSBP_SOLLC Oxygen-evolving enhancer protein 2, chloroplastic OS=Solanum lycopersicum GN=PSBP PE=2 SV=1

 Score =  280 bits (717), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 140/178 (78%), Positives = 154/178 (86%), Gaps = 11/178 (6%)

Query: 2   ASTQCFLH-HHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGS--AVSRRLAL 58
           ASTQCFLH +HAL ++PARTSS    VS+ KP Q++CRAQKQ    DD S  AVSRRLAL
Sbjct: 3   ASTQCFLHQYHALRSSPARTSS----VSSPKPNQLICRAQKQ----DDASNAAVSRRLAL 54

Query: 59  TVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREF 118
           T+LIG AA+GSKVSPADAAYGE+ANVFGKPK NTDFLPYNGDGFKL +P+KWNPSKE E+
Sbjct: 55  TLLIGTAAIGSKVSPADAAYGEAANVFGKPKENTDFLPYNGDGFKLQVPAKWNPSKEVEY 114

Query: 119 PGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSE 176
           PGQVLRYEDNFDS SN+ V +TPTDKKSITDYGSPEEFLSKVDYLLGKQAY GKT SE
Sbjct: 115 PGQVLRYEDNFDSTSNLIVAVTPTDKKSITDYGSPEEFLSKVDYLLGKQAYFGKTDSE 172

May be involved in the regulation of photosystem II.

Solanum lycopersicum (taxid: 4081)

>sp|P16059|PSBP_PEA Oxygen-evolving enhancer protein 2, chloroplastic OS=Pisum sativum GN=PSBP PE=1 SV=1

 Score =  280 bits (715), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 137/176 (77%), Positives = 149/176 (84%), Gaps = 3/176 (1%)

Query: 1   MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTV 60
           MASTQCFLHH    TTP RT S QR V   KP  IVC+AQKQ    D  + VSRRLAL+V
Sbjct: 1   MASTQCFLHHQYAITTPTRTLS-QRQVVTTKPNHIVCKAQKQDDVVD--AVVSRRLALSV 57

Query: 61  LIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPG 120
           LIGAAAVGSKVSPADAAYGE+ANVFGK KTNTD+LPYNGDGFKL +P+KWNPSKEREFPG
Sbjct: 58  LIGAAAVGSKVSPADAAYGEAANVFGKAKTNTDYLPYNGDGFKLLVPAKWNPSKEREFPG 117

Query: 121 QVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSE 176
           QVLRYEDNFD+ SNVSV++  TDKKSITDYGSPEEFLSKVDYLLGKQA+ G+T SE
Sbjct: 118 QVLRYEDNFDATSNVSVLVQTTDKKSITDYGSPEEFLSKVDYLLGKQAFFGQTDSE 173

May be involved in the regulation of photosystem II.

Pisum sativum (taxid: 3888)

>sp|P18212|PSBP2_TOBAC Oxygen-evolving enhancer protein 2-2, chloroplastic OS=Nicotiana tabacum GN=PSBP2 PE=1 SV=2

 Score =  278 bits (711), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 141/180 (78%), Positives = 157/180 (87%), Gaps = 5/180 (2%)

Query: 1   MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQI-VCRAQKQ-AVQEDD--GSAVSRRL 56
           MASTQCFLHHHALST PART   +  V ++KP Q+ VCRAQKQ A QED+    +VSRRL
Sbjct: 1   MASTQCFLHHHALST-PARTPLVRSIVPSLKPNQLLVCRAQKQSAPQEDNVNSVSVSRRL 59

Query: 57  ALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKER 116
           ALTVLIGAAAVGSKVSPADAAYGE+ANVFGKPKT+TDF  YNGDGFKL IPSKWNP+KE 
Sbjct: 60  ALTVLIGAAAVGSKVSPADAAYGEAANVFGKPKTDTDFQTYNGDGFKLQIPSKWNPNKEV 119

Query: 117 EFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSE 176
           E+PGQVLR+EDNFD+ SNV V ITPTDKKSITD+GSPE+FLS+VDYLLG+QAYSGKT SE
Sbjct: 120 EYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGRQAYSGKTDSE 179

May be involved in the regulation of photosystem II.

Nicotiana tabacum (taxid: 4097)

>sp|Q04127|PSBP3_TOBAC Oxygen-evolving enhancer protein 2-3, chloroplastic OS=Nicotiana tabacum GN=PSBP3 PE=2 SV=1

 Score =  271 bits (692), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 137/181 (75%), Positives = 156/181 (86%), Gaps = 6/181 (3%)

Query: 1   MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQI-VCRAQKQ--AVQEDD--GSAVSRR 55
           MASTQCFLHHHALST PARTS  +  V ++K  Q+ VCRAQ +  A Q+D+    +VSRR
Sbjct: 1   MASTQCFLHHHALST-PARTSLVRGIVPSLKSNQLLVCRAQNKQSAPQQDNVNSVSVSRR 59

Query: 56  LALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKE 115
           LALT+LIGAAAVGSKVSPADAAYGE+ANVFGKPKT+TDF  YNGDGFKL IPSKWNP+KE
Sbjct: 60  LALTLLIGAAAVGSKVSPADAAYGEAANVFGKPKTDTDFQTYNGDGFKLQIPSKWNPNKE 119

Query: 116 REFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSS 175
            E+PGQVLR+EDNFD+ SNV V ITPTDKKSITD+GSPE+FLS+VDYLLG+QAYSGKT S
Sbjct: 120 VEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGRQAYSGKTDS 179

Query: 176 E 176
           E
Sbjct: 180 E 180

May be involved in the regulation of photosystem II.

Nicotiana tabacum (taxid: 4097)

>sp|O49080|PSBP_FRIAG Oxygen-evolving enhancer protein 2, chloroplastic OS=Fritillaria agrestis GN=PSBP PE=2 SV=1

 Score =  270 bits (690), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 133/179 (74%), Positives = 151/179 (84%), Gaps = 4/179 (2%)

Query: 1   MASTQCFLHHHALSTTPARTSS--SQRHVSNIKPTQIVCRAQKQA-VQEDDGSAVSRRLA 57
           MAS+ CFL HHA ST PA TS   S R V  IKP+Q++CRAQK +   E+  +AVSRRLA
Sbjct: 1   MASSACFLLHHAPST-PATTSRTPSHRLVPTIKPSQLICRAQKSSDTDENSSTAVSRRLA 59

Query: 58  LTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKERE 117
           LT+LIG+AAVG+K++PA+AAYGE+ANVFGK KTNTDFLPY GDGF L IP+KWNPSKE E
Sbjct: 60  LTILIGSAAVGTKIAPANAAYGEAANVFGKAKTNTDFLPYTGDGFNLLIPAKWNPSKEVE 119

Query: 118 FPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSE 176
           FPGQVLRYEDNFD  SNVSV +TPT KKSITDYG+PEEFLS VDYLLGKQAYSGKT+SE
Sbjct: 120 FPGQVLRYEDNFDVTSNVSVTVTPTSKKSITDYGTPEEFLSTVDYLLGKQAYSGKTASE 178

May be involved in the regulation of photosystem II.

Fritillaria agrestis (taxid: 64177)

>sp|Q42029|PSBP1_ARATH Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Arabidopsis thaliana GN=PSBP1 PE=1 SV=2

 Score =  268 bits (684), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 134/179 (74%), Positives = 159/179 (88%), Gaps = 5/179 (2%)

Query: 1   MASTQCFLHHHALSTTPARTSSS---QRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLA 57
           MA + CFLH  AL+++ AR+SSS   QRHVS  KP QI+C+AQ+    EDD SAVSRRLA
Sbjct: 1   MAYSACFLHQSALASSAARSSSSSSSQRHVSLSKPVQIICKAQQS--HEDDNSAVSRRLA 58

Query: 58  LTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKERE 117
           LT+L+GAAAVGSKVSPADAAYGE+ANVFGKPKTNTDFLPYNGDGFK+ +P+KWNPSKE E
Sbjct: 59  LTLLVGAAAVGSKVSPADAAYGEAANVFGKPKTNTDFLPYNGDGFKVQVPAKWNPSKEIE 118

Query: 118 FPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSE 176
           +PGQVLR+EDNFD+ SN++V++TPTDKKSITDYGSPEEFLS+V+YLLGKQAY G+T+SE
Sbjct: 119 YPGQVLRFEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLSQVNYLLGKQAYFGETASE 177

May be involved in the regulation of photosystem II.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
225446775	259	PREDICTED: oxygen-evolving enhancer prot	0.944	0.652	0.859	8e-83
224085421	262	hypothetical protein POPTRDRAFT_818640 [	0.977	0.667	0.836	2e-82
224062595	262	hypothetical protein POPTRDRAFT_551203 [	0.977	0.667	0.836	2e-82
388519835	259	unknown [Lotus japonicus]	0.966	0.667	0.863	7e-81
388513061	259	unknown [Lotus japonicus]	0.966	0.667	0.863	7e-81
255561128	265	Oxygen-evolving enhancer protein 2, chlo	0.983	0.664	0.826	1e-80
388503344	259	unknown [Lotus japonicus]	0.966	0.667	0.857	6e-80
356526942	262	PREDICTED: oxygen-evolving enhancer prot	0.972	0.664	0.814	4e-78
388515001	195	unknown [Lotus japonicus]	0.966	0.887	0.813	2e-77
449460024	263	PREDICTED: oxygen-evolving enhancer prot	0.977	0.665	0.814	3e-77

>gi|225446775|ref|XP_002283048.1| PREDICTED: oxygen-evolving enhancer protein 2, chloroplastic [Vitis vinifera] gi|147787750|emb|CAN60827.1| hypothetical protein VITISV_001116 [Vitis vinifera]

 Score =  311 bits (797), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 147/171 (85%), Positives = 161/171 (94%), Gaps = 2/171 (1%)

Query: 1   MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTV 60
           MAST CFLHHHALST P R SS QR + +++P+Q+VCRAQKQA  EDDG+AVSRRLALTV
Sbjct: 1   MASTACFLHHHALST-PTRVSS-QRQLPSLRPSQLVCRAQKQAANEDDGAAVSRRLALTV 58

Query: 61  LIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPG 120
           LIGAAA+G+KV+PADAAYGE+ANVFGKPKTNTDFLPYNG+GFKLSIPSKWNPSKEREFPG
Sbjct: 59  LIGAAAIGTKVNPADAAYGEAANVFGKPKTNTDFLPYNGEGFKLSIPSKWNPSKEREFPG 118

Query: 121 QVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSG 171
           QVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVD+LLGKQA+ G
Sbjct: 119 QVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDFLLGKQAFFG 169

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085421|ref|XP_002307570.1| hypothetical protein POPTRDRAFT_818640 [Populus trichocarpa] gi|118488107|gb|ABK95873.1| unknown [Populus trichocarpa] gi|222857019|gb|EEE94566.1| hypothetical protein POPTRDRAFT_818640 [Populus trichocarpa]

 Score =  310 bits (793), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 148/177 (83%), Positives = 163/177 (92%), Gaps = 2/177 (1%)

Query: 1   MASTQCFLHHHALSTTPAR-TSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALT 59
           MAST CFLHHHAL TTPAR T SSQR V+N+KPTQ+ CRAQKQAVQE+D  AVSRRLALT
Sbjct: 1   MASTSCFLHHHAL-TTPARSTPSSQRQVANLKPTQLACRAQKQAVQEEDNGAVSRRLALT 59

Query: 60  VLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFP 119
           VLIGAAA+GSKV+PADAAYGESAN+FGKPKT+TDFLPYNGDGFKLS+PSKWNPSKEREFP
Sbjct: 60  VLIGAAALGSKVAPADAAYGESANIFGKPKTDTDFLPYNGDGFKLSVPSKWNPSKEREFP 119

Query: 120 GQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSE 176
           GQVLRYEDNFD+ SNVSV++ PTDKKSITDYGSPEEFLSKVD+LLGKQ+    T+SE
Sbjct: 120 GQVLRYEDNFDATSNVSVMVIPTDKKSITDYGSPEEFLSKVDFLLGKQSSLFATASE 176

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062595|ref|XP_002300858.1| hypothetical protein POPTRDRAFT_551203 [Populus trichocarpa] gi|118487448|gb|ABK95552.1| unknown [Populus trichocarpa] gi|222842584|gb|EEE80131.1| hypothetical protein POPTRDRAFT_551203 [Populus trichocarpa]

 Score =  309 bits (792), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 148/177 (83%), Positives = 161/177 (90%), Gaps = 2/177 (1%)

Query: 1   MASTQCFLHHHALSTTPAR-TSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALT 59
           MAST CFLHHHAL TTPAR TSSSQR V N+KP Q+VCRAQKQAVQE+D   VSRRLALT
Sbjct: 1   MASTACFLHHHAL-TTPARSTSSSQRQVVNLKPAQLVCRAQKQAVQEEDDGVVSRRLALT 59

Query: 60  VLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFP 119
           VLIGAAA+GSKV+PADAAYGESAN+FGKPKTNTDFLPYNGDGFKLS+P+KWNPSKEREFP
Sbjct: 60  VLIGAAALGSKVAPADAAYGESANIFGKPKTNTDFLPYNGDGFKLSVPAKWNPSKEREFP 119

Query: 120 GQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSE 176
           GQVLRYEDNFD+ SN+SV++TPTD KSI DYGSPEEFLSKVDYLLGKQ+    TSSE
Sbjct: 120 GQVLRYEDNFDATSNLSVMVTPTDTKSIADYGSPEEFLSKVDYLLGKQSSLFATSSE 176

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519835|gb|AFK47979.1| unknown [Lotus japonicus]

 Score =  305 bits (780), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 152/176 (86%), Positives = 160/176 (90%), Gaps = 3/176 (1%)

Query: 1   MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTV 60
           MASTQCFLHHHAL TTP RTSS QR V +IKP QIVCRAQKQ   ED  S VSRRLALT+
Sbjct: 1   MASTQCFLHHHAL-TTPTRTSS-QRQVVSIKPNQIVCRAQKQQDVEDV-SPVSRRLALTL 57

Query: 61  LIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPG 120
           LIGAAAVGSKVSPADAAYGE+ANVFGKPK+NTDFLPYNGDGFKLSIP+KWNPSKEREFPG
Sbjct: 58  LIGAAAVGSKVSPADAAYGEAANVFGKPKSNTDFLPYNGDGFKLSIPAKWNPSKEREFPG 117

Query: 121 QVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSE 176
           QVLRYEDNFD+ SNVSVIIT TDKKSITDYGSPEEFLSKVDYLLGKQA+ G+T SE
Sbjct: 118 QVLRYEDNFDATSNVSVIITATDKKSITDYGSPEEFLSKVDYLLGKQAFFGQTDSE 173

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513061|gb|AFK44592.1| unknown [Lotus japonicus]

 Score =  304 bits (779), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 152/176 (86%), Positives = 160/176 (90%), Gaps = 3/176 (1%)

Query: 1   MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTV 60
           MASTQCFLHHHAL TTP RTSS QR V +IKP QIVCRAQKQ   ED  S VSRRLALT+
Sbjct: 1   MASTQCFLHHHAL-TTPTRTSS-QRQVVSIKPNQIVCRAQKQQDVEDV-SPVSRRLALTL 57

Query: 61  LIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPG 120
           LIGAAAVGSKVSPADAAYGE+ANVFGKPK+NTDFLPYNGDGFKLSIP+KWNPSKEREFPG
Sbjct: 58  LIGAAAVGSKVSPADAAYGEAANVFGKPKSNTDFLPYNGDGFKLSIPAKWNPSKEREFPG 117

Query: 121 QVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSE 176
           QVLRYEDNFD+ SNVSVIIT TDKKSITDYGSPEEFLSKVDYLLGKQA+ G+T SE
Sbjct: 118 QVLRYEDNFDATSNVSVIITATDKKSITDYGSPEEFLSKVDYLLGKQAFFGQTDSE 173

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561128|ref|XP_002521576.1| Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis] gi|223539254|gb|EEF40847.1| Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]

 Score =  304 bits (778), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 148/179 (82%), Positives = 164/179 (91%), Gaps = 3/179 (1%)

Query: 1   MASTQCFLHHHALSTTPARTSS-SQRHVSNI-KPTQIVCRAQ-KQAVQEDDGSAVSRRLA 57
           MA+T CFLHH AL++TP R SS SQR VSN  KPTQ +CRA  KQ +QE+D S VSRRLA
Sbjct: 1   MATTGCFLHHPALTSTPNRLSSVSQRQVSNTTKPTQFICRASTKQPLQEEDLSLVSRRLA 60

Query: 58  LTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKERE 117
           LTVLIGAAAVGSKVSPADAAYGE+ANVFGKPKTNTDF+PYNGDGF+LS+PSKWNPSKERE
Sbjct: 61  LTVLIGAAAVGSKVSPADAAYGEAANVFGKPKTNTDFMPYNGDGFQLSVPSKWNPSKERE 120

Query: 118 FPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSE 176
           FPGQVLRYEDNFDSNSN+SV+ITPTDKKSITD+G+PEEFL+KVDYLLGKQAY GKT+SE
Sbjct: 121 FPGQVLRYEDNFDSNSNLSVMITPTDKKSITDFGTPEEFLAKVDYLLGKQAYFGKTASE 179

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503344|gb|AFK39738.1| unknown [Lotus japonicus]

 Score =  301 bits (771), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 151/176 (85%), Positives = 159/176 (90%), Gaps = 3/176 (1%)

Query: 1   MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTV 60
           MASTQCFLHHHAL TTP RTSS QR V +IK  QIVCRAQKQ   ED  S VSRRLALT+
Sbjct: 1   MASTQCFLHHHAL-TTPTRTSS-QRQVVSIKSNQIVCRAQKQQDVEDV-SPVSRRLALTL 57

Query: 61  LIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPG 120
           LIGAAAVGSKVSPADAAYGE+ANVFGKPK+NTDFLPYNGDGFKLSIP+KWNPSKEREFPG
Sbjct: 58  LIGAAAVGSKVSPADAAYGEAANVFGKPKSNTDFLPYNGDGFKLSIPAKWNPSKEREFPG 117

Query: 121 QVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSE 176
           QVLRYEDNFD+ SNVSVIIT TDKKSITDYGSPEEFLSKVDYLLGKQA+ G+T SE
Sbjct: 118 QVLRYEDNFDATSNVSVIITATDKKSITDYGSPEEFLSKVDYLLGKQAFFGQTYSE 173

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526942|ref|XP_003532074.1| PREDICTED: oxygen-evolving enhancer protein 2, chloroplastic-like [Glycine max]

 Score =  295 bits (756), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 145/178 (81%), Positives = 159/178 (89%), Gaps = 4/178 (2%)

Query: 1   MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQE--DDGSAVSRRLAL 58
           MASTQCFLHHHAL TTP R +SSQR V + KP  IVC+AQKQ VQE  D  + VSRRLAL
Sbjct: 1   MASTQCFLHHHAL-TTPTR-ASSQRLVVSTKPNHIVCKAQKQVVQEGEDTTNIVSRRLAL 58

Query: 59  TVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREF 118
           TVLIGAAAVGSKV+PADAAYGE+ANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKE E+
Sbjct: 59  TVLIGAAAVGSKVAPADAAYGEAANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEVEY 118

Query: 119 PGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSE 176
           PGQVLRYEDNFDS SNV+V++T TDKKSITDYGSPEEFLS+VDYLLGKQA+ G+T +E
Sbjct: 119 PGQVLRYEDNFDSTSNVAVMVTATDKKSITDYGSPEEFLSQVDYLLGKQAFFGQTDAE 176

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388515001|gb|AFK45562.1| unknown [Lotus japonicus]

 Score =  293 bits (750), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 144/177 (81%), Positives = 155/177 (87%), Gaps = 4/177 (2%)

Query: 1   MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQE-DDGSAVSRRLALT 59
           MASTQCFL+HHAL++   R SS QR V N KP Q+ C+AQKQA QE DD S VSRRLALT
Sbjct: 1   MASTQCFLYHHALTS---RASSIQRLVVNTKPNQVFCKAQKQATQEEDDASIVSRRLALT 57

Query: 60  VLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFP 119
           VLIGAAAVGSKVS ADAAYGESANVFGKPKTNTDFLPYNGDGFKLS+PSKWNPSKE E+ 
Sbjct: 58  VLIGAAAVGSKVSRADAAYGESANVFGKPKTNTDFLPYNGDGFKLSVPSKWNPSKEVEYT 117

Query: 120 GQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSE 176
           GQVLRYEDNFDS SNV V +TPTDKKSITDYGSPEEFLSKVDYLLGKQA+ G+T +E
Sbjct: 118 GQVLRYEDNFDSTSNVVVTVTPTDKKSITDYGSPEEFLSKVDYLLGKQAFFGETQAE 174

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460024|ref|XP_004147746.1| PREDICTED: oxygen-evolving enhancer protein 2, chloroplastic-like [Cucumis sativus] gi|449502131|ref|XP_004161551.1| PREDICTED: oxygen-evolving enhancer protein 2, chloroplastic-like [Cucumis sativus] gi|11134156|sp|Q9SLQ8.1|PSBP_CUCSA RecName: Full=Oxygen-evolving enhancer protein 2, chloroplastic; Short=OEE2; AltName: Full=23 kDa subunit of oxygen evolving system of photosystem II; AltName: Full=23 kDa thylakoid membrane protein; AltName: Full=OEC 23 kDa subunit; AltName: Full=OEC23; Flags: Precursor gi|6691487|dbj|BAA89317.1| 23kDa polypeptide of the oxygen-evolving complex of photosystem II [Cucumis sativus]

 Score =  293 bits (749), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 145/178 (81%), Positives = 158/178 (88%), Gaps = 3/178 (1%)

Query: 1   MASTQCFLHHHALSTTPARTSSSQRHVSNIK-PTQIVCRAQKQA-VQEDDGSAVSRRLAL 58
           MAST CFLHHHAL T  AR+SSS R  +  K P  +VCRAQKQ   QE++G  VSRRLAL
Sbjct: 1   MASTSCFLHHHAL-TAAARSSSSPRQAALPKSPQLLVCRAQKQQPAQEEEGGVVSRRLAL 59

Query: 59  TVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREF 118
           TVLIGAAA+GSKVSPADAAYGE+ANVFGKPK+NTD+LPY+GDGFKLSIPSKWNPSKEREF
Sbjct: 60  TVLIGAAALGSKVSPADAAYGEAANVFGKPKSNTDYLPYSGDGFKLSIPSKWNPSKEREF 119

Query: 119 PGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSE 176
           PGQVLRYEDNFDSNSN+SVII PTDKKSI D+GSPEEFLSKVDYLLGKQAY GKT+SE
Sbjct: 120 PGQVLRYEDNFDSNSNLSVIINPTDKKSIKDFGSPEEFLSKVDYLLGKQAYFGKTASE 177

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
TAIR|locus:2033087	263	PSBP-1 "photosystem II subunit	0.972	0.661	0.748	4.9e-69

TAIR|locus:2033087 PSBP-1 "photosystem II subunit P-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 700 (251.5 bits), Expect = 4.9e-69, P = 4.9e-69
 Identities = 134/179 (74%), Positives = 159/179 (88%)

Query:     1 MASTQCFLHHHALSTTPARTSSS---QRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLA 57
             MA + CFLH  AL+++ AR+SSS   QRHVS  KP QI+C+AQ+    EDD SAVSRRLA
Sbjct:     1 MAYSACFLHQSALASSAARSSSSSSSQRHVSLSKPVQIICKAQQS--HEDDNSAVSRRLA 58

Query:    58 LTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKERE 117
             LT+L+GAAAVGSKVSPADAAYGE+ANVFGKPKTNTDFLPYNGDGFK+ +P+KWNPSKE E
Sbjct:    59 LTLLVGAAAVGSKVSPADAAYGEAANVFGKPKTNTDFLPYNGDGFKVQVPAKWNPSKEIE 118

Query:   118 FPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSE 176
             +PGQVLR+EDNFD+ SN++V++TPTDKKSITDYGSPEEFLS+V+YLLGKQAY G+T+SE
Sbjct:   119 YPGQVLRFEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLSQVNYLLGKQAYFGETASE 177


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.127   0.364    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      179       179   0.00089  109 3  11 23  0.49    32
                                                     31  0.39    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  593 (63 KB)
  Total size of DFA:  149 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.90u 0.12s 19.02t   Elapsed:  00:00:02
  Total cpu time:  18.90u 0.12s 19.02t   Elapsed:  00:00:02
  Start:  Fri May 10 19:17:06 2013   End:  Fri May 10 19:17:08 2013

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS;IDA

GO:0009654 "oxygen evolving complex" evidence=ISS

GO:0015979 "photosynthesis" evidence=IEA

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0019898 "extrinsic to membrane" evidence=TAS

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP;RCA

GO:0008266 "poly(U) RNA binding" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA;TAS

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P93566	PSBP_SOLTU	No assigned EC number	0.7840	0.9553	0.6576	N/A	no
P12302	PSBP_SPIOL	No assigned EC number	0.7569	0.9832	0.6591	N/A	no
P29795	PSBP_SOLLC	No assigned EC number	0.7865	0.9329	0.6472	N/A	no
O49080	PSBP_FRIAG	No assigned EC number	0.7430	0.9776	0.6628	N/A	no
Q9SLQ8	PSBP_CUCSA	No assigned EC number	0.8146	0.9776	0.6653	N/A	no
Q04127	PSBP3_TOBAC	No assigned EC number	0.7569	0.9776	0.6578	N/A	no
P16059	PSBP_PEA	No assigned EC number	0.7784	0.9664	0.6679	N/A	no
Q42029	PSBP1_ARATH	No assigned EC number	0.7486	0.9720	0.6615	yes	no
Q96334	PSBP_BRAJU	No assigned EC number	0.7862	0.7318	0.6036	N/A	no
Q7DM39	PSBP1_TOBAC	No assigned EC number	0.7912	0.9832	0.6567	N/A	no
P18212	PSBP2_TOBAC	No assigned EC number	0.7833	0.9776	0.6603	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	179
PLN00042	260	PLN00042, PLN00042, photosystem II oxygen-evolving	1e-106
pfam01789	163	pfam01789, PsbP, PsbP	2e-26

>gnl|CDD|177676 PLN00042, PLN00042, photosystem II oxygen-evolving enhancer protein 2; Provisional

 Score =  305 bits (783), Expect = e-106
 Identities = 134/179 (74%), Positives = 150/179 (83%), Gaps = 8/179 (4%)

Query: 1   MASTQCFLHHHALSTTPARTSS---SQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLA 57
           MAST CFLH  AL +  A  SS   S R VS  +P+Q+VCRAQ     E+D SAVSRR A
Sbjct: 1   MASTACFLHQSALKSAAALASSSSASARAVSASRPSQVVCRAQ-----EEDNSAVSRRAA 55

Query: 58  LTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKERE 117
           L +L GAAA G+KVSPA+AAYGESANVFGKPKTNT FLPYNGDGFKL +PSKWNPSKERE
Sbjct: 56  LALLAGAAAAGAKVSPANAAYGESANVFGKPKTNTGFLPYNGDGFKLLVPSKWNPSKERE 115

Query: 118 FPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSE 176
           FPGQVLR+EDNFD+ SN+SV++TPTDKKSITDYGSPEEFLSKV YLLGKQAYSG+T+SE
Sbjct: 116 FPGQVLRFEDNFDATSNLSVMVTPTDKKSITDYGSPEEFLSKVSYLLGKQAYSGETASE 174

Length = 260

>gnl|CDD|216701 pfam01789, PsbP, PsbP

 Score = 98.1 bits (245), Expect = 2e-26
 Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 13/95 (13%)

Query: 85  FGKPKTNTDFLPY--NGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPT 142
             K KTN  F  Y    DG++   P+ W   +E    G  + + D  +S+ NVSV+I+P 
Sbjct: 1   ACKAKTNAGFQAYVDTDDGYEFLYPTGW--WREVVSDGPDVVFHDLIESDENVSVVISPV 58

Query: 143 DKK-SITDYGSPEEFLSKVDYLLGKQAYSGKTSSE 176
           DKK S+ D GSPEE         G++   G  + E
Sbjct: 59  DKKKSLEDLGSPEEV--------GERLLRGVLAPE 85

This family consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria. The 23 KDa PsbP protein is required for PSII to be fully operational in vivo, it increases the affinity of the water oxidation site for Cl- and provides the conditions required for high affinity binding of Ca2+. Length = 163

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	179
PLN00042	260	photosystem II oxygen-evolving enhancer protein 2;	100.0
PLN00059	286	PsbP domain-containing protein 1; Provisional	99.95
PLN00067	263	PsbP domain-containing protein 6; Provisional	99.87
PF01789	175	PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynt	99.82
PLN00066	262	PsbP domain-containing protein 4; Provisional	99.75
PLN03152	241	hypothetical protein; Provisional	98.33

>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional

Probab=100.00  E-value=3.6e-62  Score=421.87  Aligned_cols=172  Identities=76%  Similarity=1.163  Sum_probs=160.5

Q ss_pred             CcchhhhhhccccCCCccccc---ccccccCCCCCceeeeecccccccccCCcchhhHHHHHHHHHHHhhhccCCccccc
Q 030310            1 MASTQCFLHHHALSTTPARTS---SSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAA   77 (179)
Q Consensus         1 ma~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~c~a~~~~~~~~~~~~~~RR~aL~~~~gaaa~~s~~~pa~Aa   77 (179)
                      ||||+||||||+++++....+   ++++.++..++++++|++|++.     .+.++||.+|++++|+++++++++|+++|
T Consensus         1 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~srr~~l~~~~ga~a~~~~~~pa~aa   75 (260)
T PLN00042          1 MASTACFLHQSALKSAAALASSSSASARAVSASRPSQVVCRAQEED-----NSAVSRRAALALLAGAAAAGAKVSPANAA   75 (260)
T ss_pred             CcchhhhhhcccccchhhhcccccccccccCCCCCcceeeeccccc-----cccccHHHHHHHHHHHHHhhcccCchhhh
Confidence            999999999999955443211   4578899999999999999773     34689999999999999999999999999


Q ss_pred             ccccccccCCCCCCCCcccccCCCeeEecCCCCCCCceeeeCCceEEeeeCCCCCCceEEEEecCCCCCcccCCChHHHH
Q 030310           78 YGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFL  157 (179)
Q Consensus        78 yge~anvFg~p~~~~~F~~y~~DGYsFlyPs~Wnpskev~~~G~dv~f~D~~~~~eNvsV~ispt~kksI~DlGsPee~~  157 (179)
                      |||+|||||+||+++||++|++|||+|+||+||||++|++++|+|++|||+|+++|||+|+|+|++|++|+|||+||||+
T Consensus        76 y~~~anvfg~~k~~~gF~~y~~dgY~FlyP~~W~~~ke~~~~G~dv~f~D~~~~~eNVSV~Ispt~k~sI~dlGsPee~l  155 (260)
T PLN00042         76 YGESANVFGKPKTNTGFLPYNGDGFKLLVPSKWNPSKEREFPGQVLRFEDNFDATSNLSVMVTPTDKKSITDYGSPEEFL  155 (260)
T ss_pred             hcchhhccCCCCCCCCCeEeeCCCeEEecCCCCccccccccCCceEEeeccccccccEEEEEecCCcCCHhhcCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhcccCcccc
Q 030310          158 SKVDYLLGKQAYSGKTSSEV  177 (179)
Q Consensus       158 ~~Vgy~L~kq~~~g~t~seg  177 (179)
                      ++|+|+|+||+|+|+|+|||
T Consensus       156 ~~vgylL~kq~~a~~t~s~~  175 (260)
T PLN00042        156 SKVSYLLGKQAYSGETASEG  175 (260)
T ss_pred             HHHHHHHHhhhccCcccccc
Confidence            99999999999999999986

>PLN00059 PsbP domain-containing protein 1; Provisional

Probab=99.95  E-value=1.6e-27  Score=207.97  Aligned_cols=121  Identities=24%  Similarity=0.354  Sum_probs=97.2

Q ss_pred             CCCCceeeeecc-cccccccCCcchhhHHHHHHHHH-HHhhhccCCcccccccccccccCCCCCCCCcccccCCCeeEec
Q 030310           29 NIKPTQIVCRAQ-KQAVQEDDGSAVSRRLALTVLIG-AAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSI  106 (179)
Q Consensus        29 ~~~~~~~~c~a~-~~~~~~~~~~~~~RR~aL~~~~g-aaa~~s~~~pa~Aayge~anvFg~p~~~~~F~~y~~DGYsFly  106 (179)
                      .-+|..+.|..| ++      ..+++||++|+..+- +..+.+.++ ...|++       .|++++.|+| +.|||+|+|
T Consensus        59 ~~~~~~~~~~~~~~~------~~~~~rr~~~~~~l~~~~~~~s~~~-~~~a~a-------~~~~l~~y~D-~~DGY~FlY  123 (286)
T PLN00059         59 PDSPVAINCLTDAKQ------VCAVGRRKSMMMGLLMSGLIVSEAN-LPTAFA-------SIPVFREYID-TFDGYSFKY  123 (286)
T ss_pred             CCCCeeeecccchhh------hhhhhhhhhhHHHHHHHHHHHHhhc-Cchhhc-------CCcccceeEc-CCCCeEEeC
Confidence            345566888888 34      448999999764442 333333332 234444       4668899999 899999999


Q ss_pred             CCCCCCCceeeeCCceEEeeeCCCCCCceEEEEecCC---CCCcccCCChHHHHHHHHHHHHhhhhcc
Q 030310          107 PSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTD---KKSITDYGSPEEFLSKVDYLLGKQAYSG  171 (179)
Q Consensus       107 Ps~Wnpskev~~~G~dv~f~D~~~~~eNvsV~ispt~---kksI~DlGsPee~~~~Vgy~L~kq~~~g  171 (179)
                      |+||   +||+..|+|++|||+|+.+|||+|+|+|+.   +++|+|||+|+|    |||+|.||+++.
T Consensus       124 P~GW---i~V~~~G~DVvFrD~Ie~~ENVSV~ISs~sss~~~sLeDLGsP~e----VgerLlkqvLa~  184 (286)
T PLN00059        124 PQNW---IQVRGAGADIFFRDPVVLDENLSVEFSSPSSSKYTSLEDLGSPEE----VGKRVLRQYLTE  184 (286)
T ss_pred             CCCC---eEeccCCCceEEeccCccccceEEEEecCCcccCCChHHcCCHHH----HHHHHHHHHhcc
Confidence            9999   999999999999999999999999999874   899999999999    999999999873

>PLN00067 PsbP domain-containing protein 6; Provisional

Probab=99.87  E-value=7.6e-22  Score=171.46  Aligned_cols=114  Identities=21%  Similarity=0.352  Sum_probs=84.0

Q ss_pred             chhhHHHHHHHHHHHhhhccCCcccccccc-cccccCCC-CCCCCccccc-------------CCCeeEecCCCCCCCce
Q 030310           51 AVSRRLALTVLIGAAAVGSKVSPADAAYGE-SANVFGKP-KTNTDFLPYN-------------GDGFKLSIPSKWNPSKE  115 (179)
Q Consensus        51 ~~~RR~aL~~~~gaaa~~s~~~pa~Aayge-~anvFg~p-~~~~~F~~y~-------------~DGYsFlyPs~Wnpske  115 (179)
                      .+.||+.|.+++.+..++.. .+..+...| +...|.+| ....+|..|.             ..||+|+||++|+++++
T Consensus        42 ~~~rr~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~lp~~~~~~~~~~f~~~~~~tpalra~~i~gY~FlyP~gW~~v~V  120 (263)
T PLN00067         42 VIHRRELLLGLALAPLILIA-PEPPAEAREVEVGSYLPPSPSDPSFVLFKASPKDTPALRAGNVQPYQFILPPTWKQTRV  120 (263)
T ss_pred             hhHHHHHHhhhhhhhhhhcc-CCchhhhheehhhcccCCCCCCCceEEEecCCCCCcccccCCcccceEeCCCCCcCccc
Confidence            57899999887755444333 333443444 47888876 5678888876             78999999999965555


Q ss_pred             e------------eeCCceEEeeeCCCCCCceEEEEecC------CCCCcccCCChHHHHHHHHHHHHhhhhcc
Q 030310          116 R------------EFPGQVLRYEDNFDSNSNVSVIITPT------DKKSITDYGSPEEFLSKVDYLLGKQAYSG  171 (179)
Q Consensus       116 v------------~~~G~dv~f~D~~~~~eNvsV~ispt------~kksI~DlGsPee~~~~Vgy~L~kq~~~g  171 (179)
                      -            +++|+|++|||++  ++||+|+|+|+      ++++|+|||+||||    ++.||+.+..|
T Consensus       121 s~~~sGnycqp~c~~p~~dv~F~D~~--dgnVSVIVSPV~r~t~k~~~sIeDlGsPeeV----l~~Lg~~v~g~  188 (263)
T PLN00067        121 ANILSGNYCQPKCAEPWVEVKFEDEK--QGKVQVVASPLIRLTNKPNATIEEIGSPEKL----IASLGPFVTGN  188 (263)
T ss_pred             cccccCccccccccCCCceEEEeCCC--CCCEEEEEecccccccCCCCChHHccCHHHH----HHHhhHHhhcC
Confidence            3            2346999999955  67999999997      66999999999995    55555555553

>PF01789 PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae

Probab=99.82  E-value=1.4e-20  Score=151.32  Aligned_cols=88  Identities=40%  Similarity=0.613  Sum_probs=63.4

Q ss_pred             ccccccccccccCCCCCCCCcccc--cCCCeeEecCCCCCCCceeeeCCceEEeeeCCCCCCceEEEEecCCCC-CcccC
Q 030310           74 ADAAYGESANVFGKPKTNTDFLPY--NGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKK-SITDY  150 (179)
Q Consensus        74 a~Aayge~anvFg~p~~~~~F~~y--~~DGYsFlyPs~Wnpskev~~~G~dv~f~D~~~~~eNvsV~ispt~kk-sI~Dl  150 (179)
                      +.++++..+|+++..++..+|++|  ..|||+|+||++|   ++++++|+|++|+|+++..+||+|+|+|+.++ +|+||
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~y~d~~~~y~f~~P~gW---~~~~~~G~~v~f~d~~~~~~nvsV~v~p~~~~~sl~~l   79 (175)
T PF01789_consen    3 ALAALLSSANVACAAEASTGFQPYTDSDDGYSFLYPSGW---EEVDVSGADVVFRDPIDADENVSVVVSPVPKDFSLEDL   79 (175)
T ss_dssp             -------------STT--SSEEEEEECTTTEEEEEETTE---EEEESTTEEEEEEETTETTSEEEEEEEE-STS-SGGGG
T ss_pred             eeEEeeccchhhhcccCCCCceEEEcCCCCEEEECCCCC---eecCCCCeEEEEECcccccceEEEEEEecCCcCchhhc
Confidence            445666666777777777888888  7999999999999   99999999999999999999999999999666 99999


Q ss_pred             CChHHHHHHHHHHHHhhh
Q 030310          151 GSPEEFLSKVDYLLGKQA  168 (179)
Q Consensus       151 GsPee~~~~Vgy~L~kq~  168 (179)
                      |+|+|    |++.|.++.
T Consensus        80 Gs~~~----va~~l~~~~   93 (175)
T PF01789_consen   80 GSPEE----VAERLLNGE   93 (175)
T ss_dssp             -SHHH----HHHHHHHHC
T ss_pred             CCHHH----HHHHHhhhh
Confidence            99999    566665543

Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbP. Both PsbP and PsbQ (IPR008797 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. PsbP increases the affinity of the water oxidation site for chloride ions and provides the conditions required for high affinity binding of calcium ions [, ]. The crystal structure of PsbP from Nicotiana tabacum (Common tobacco) revealed a two-domain structure, where domain 1 may play a role in the ion retention activity in PSII, the N-terminal residues being essential for calcium and chloride ion retention activity []. PsbP is encoded in the nuclear genome in plants.; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 2VU4_A 1V2B_A 2LNJ_A 2XB3_A.

>PLN00066 PsbP domain-containing protein 4; Provisional

Probab=99.75  E-value=9.2e-18  Score=146.11  Aligned_cols=119  Identities=26%  Similarity=0.394  Sum_probs=83.3

Q ss_pred             CcchhhHHHHHHHHHHHhh--hccCCccccc-cccccc-c--cCCCCCCCCccccc---------------CCCeeEecC
Q 030310           49 GSAVSRRLALTVLIGAAAV--GSKVSPADAA-YGESAN-V--FGKPKTNTDFLPYN---------------GDGFKLSIP  107 (179)
Q Consensus        49 ~~~~~RR~aL~~~~gaaa~--~s~~~pa~Aa-yge~an-v--Fg~p~~~~~F~~y~---------------~DGYsFlyP  107 (179)
                      ...++||.+|+.++.++.+  ++...++.|+ ||-.|. +  |..| ...+|..|.               ...|+|+||
T Consensus        42 ~~~~~rr~~~~s~~~~~~~~~~~~~~~~~a~~~g~~ag~~~~~s~~-~~~g~~~~~rp~~~~Gg~G~~~~~i~~Y~F~yP  120 (262)
T PLN00066         42 ATAVSRRSALASGAAAASSAVLAFPGEGLAVKQGLLAGRVPGLSEP-DENGWRTYRRPEGKSGGHGVGWSEITPYSFKVP  120 (262)
T ss_pred             cchhhHHHHHHHHHHHHhhhhhcCCcchhhhhhcccccCCCCCCCc-cccceEEEecCccccCcCCCCccccCCeEEECC
Confidence            4478999999876655333  3333344444 775432 2  1222 224555554               478999999


Q ss_pred             CCCCCCceeeeC-----CceEEeeeCCCCCCceEEEEecC--------CCCCcccCCChHHHHHHHHHHHHhhhhcccCc
Q 030310          108 SKWNPSKEREFP-----GQVLRYEDNFDSNSNVSVIITPT--------DKKSITDYGSPEEFLSKVDYLLGKQAYSGKTS  174 (179)
Q Consensus       108 s~Wnpskev~~~-----G~dv~f~D~~~~~eNvsV~ispt--------~kksI~DlGsPee~~~~Vgy~L~kq~~~g~t~  174 (179)
                      ++|   +|+.+.     |.++.||+..+..+||+|+|+|+        ++++|+|||+|||    |++.|+++++ |.+.
T Consensus       121 ~GW---~ev~VS~~d~gg~~vd~Rf~~~~~~nvsVvVspv~rla~~~~~~~sI~dLGspee----Vi~~l~~~v~-g~~~  192 (262)
T PLN00066        121 QGW---EEVPVSIADLGGTEIDLRFASDKEGRLKVVVAPVLRFADNLGDNATIEEIGPPEK----VISGFGPELI-GEPV  192 (262)
T ss_pred             CCC---eEeecccccCCCCceEEEeccCCCccEEEEEeccccccccccCCCChHHcCCHHH----HHHHHHHHhc-CCCc
Confidence            999   999887     66677777779999999999997        7999999999999    5566666643 5554


Q ss_pred             cc
Q 030310          175 SE  176 (179)
Q Consensus       175 se  176 (179)
                      .|
T Consensus       193 ~e  194 (262)
T PLN00066        193 EE  194 (262)
T ss_pred             cc
Confidence            44

>PLN03152 hypothetical protein; Provisional

Probab=98.33  E-value=6.1e-07  Score=77.77  Aligned_cols=109  Identities=23%  Similarity=0.449  Sum_probs=66.9

Q ss_pred             chhhHHHHHHHHH--HHhhhccCCccccccccccc----ccCCCCCCCCcccccCCCeeEecCCCCCCCcee-eeC-C--
Q 030310           51 AVSRRLALTVLIG--AAAVGSKVSPADAAYGESAN----VFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKER-EFP-G--  120 (179)
Q Consensus        51 ~~~RR~aL~~~~g--aaa~~s~~~pa~Aayge~an----vFg~p~~~~~F~~y~~DGYsFlyPs~Wnpskev-~~~-G--  120 (179)
                      ..+||+.+.-.+.  +.++. .-.|...++++..+    +-+.-.|.+.+-.|-+|||+.-||..+...-|- ++. |  
T Consensus        30 ~~~~r~~~~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~nt~~w~~~~g~gf~~~~pp~f~di~e~~~~~~g~~  108 (241)
T PLN03152         30 GASRRDFILHTASLCASSLA-AQNPLPPSLADPSKPSKPLLSGIANTKSWFQFYGDGFSIRVPPSFEDIMEPEDYNAGLS  108 (241)
T ss_pred             cccccceeeehhHHHHhhhh-cCCCCCccccCCCCCCCchheeeecchhhhhhhCCceEEeCCCChhhhcChhhcccccc
Confidence            3557766533222  22222 33555566666522    222223445555566999999999999333222 111 1  


Q ss_pred             ----------ceEEeeeCCCCCCceEEEEecC--------CCCCcccCCChHHHHHHHHHHHH
Q 030310          121 ----------QVLRYEDNFDSNSNVSVIITPT--------DKKSITDYGSPEEFLSKVDYLLG  165 (179)
Q Consensus       121 ----------~dv~f~D~~~~~eNvsV~ispt--------~kksI~DlGsPee~~~~Vgy~L~  165 (179)
                                -..|| +--|.+|||||+|+|+        ++|+|+|||+|+|    ||++|.
T Consensus       109 ~yg~~akp~~~~aRf-~s~D~sEnVSVVIspv~~LK~tfle~kDLtDLGsp~E----Vgkv~v  166 (241)
T PLN03152        109 LYGDKAKPRTFAARF-ASPDGSEVLSVVIRPSNQLKITFLEAKDITDLGSLKE----AAKIFV  166 (241)
T ss_pred             eecCCCCCcceeeee-cCCCCCceEEEEEecCccccccccccCChhHcCCHHH----HHHhhC
Confidence                      12333 2346799999999996        7999999999999    677665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	179
2vu4_A	190	Structure Of Psbp Protein From Spinacia Oleracea At		8e-48
1v2b_A	177	Crystal Structure Of Psbp Protein In The Oxygen-Evo		6e-41

>pdb|2VU4|A Chain A, Structure Of Psbp Protein From Spinacia Oleracea At 1.98 A Resolution Length = 190

Iteration: 1
 Score =  186 bits (471), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 82/100 (82%), Positives = 94/100 (94%)
Query: 77  AYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVS 136
           AYGE+ANVFGKPK NT+F+PYNGDGFKL +PSKWNPSKE+EFPGQVLRYEDNFD+ SN+S
Sbjct: 5   AYGEAANVFGKPKKNTEFMPYNGDGFKLLVPSKWNPSKEKEFPGQVLRYEDNFDATSNLS 64
Query: 137 VIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSE 176
           V++ PTDKKSITD+GSPE+FLS+VDYLLGKQAY GKT SE
Sbjct: 65  VLVQPTDKKSITDFGSPEDFLSQVDYLLGKQAYFGKTDSE 104

>pdb|1V2B|A Chain A, Crystal Structure Of Psbp Protein In The Oxygen-Evolving Complex Of Photosystem Ii From Higher Plants Length = 177

Iteration: 1
 Score =  163 bits (412), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 74/91 (81%), Positives = 83/91 (91%)
Query: 86  GKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKK 145
           GKPKT+TDF  YNGDGFKL IPSKWNP+KE E+PGQVLR+EDNFD+ SNV V ITPTDKK
Sbjct: 1   GKPKTDTDFQTYNGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKK 60
Query: 146 SITDYGSPEEFLSKVDYLLGKQAYSGKTSSE 176
           SITD+GSPE+FLS+VDYLLG+QAYSGKT SE
Sbjct: 61  SITDFGSPEQFLSQVDYLLGRQAYSGKTDSE 91

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	179
2vu4_A	273	Oxygen-evolving enhancer protein 2; kDa protein, t	5e-59
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	7e-34
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	1e-13
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	3e-10

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2 Length = 177

 Score =  117 bits (293), Expect = 7e-34
 Identities = 74/91 (81%), Positives = 83/91 (91%)

Query: 86  GKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKK 145
           GKPKT+TDF  YNGDGFKL IPSKWNP+KE E+PGQVLR+EDNFD+ SNV V ITPTDKK
Sbjct: 1   GKPKTDTDFQTYNGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKK 60

Query: 146 SITDYGSPEEFLSKVDYLLGKQAYSGKTSSE 176
           SITD+GSPE+FLS+VDYLLG+QAYSGKT SE
Sbjct: 61  SITDFGSPEQFLSQVDYLLGRQAYSGKTDSE 91

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus} Length = 165

 Score = 64.5 bits (156), Expect = 1e-13
 Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 5/89 (5%)

Query: 92  TDFLPY--NGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITP-TDKKSIT 148
           +    Y  + DG++   P  W   +  +       + D  ++  NVSV++      KS+ 
Sbjct: 6   SGLQAYVDSYDGYEFLYPRGWVQVQVEDPVDV--VFHDIIETTENVSVVVNTVASTKSLE 63

Query: 149 DYGSPEEFLSKVDYLLGKQAYSGKTSSEV 177
           + GSPEE   ++   +   + SG++S+ +
Sbjct: 64  ELGSPEEVGDRLLRNIIAPSESGRSSALI 92

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP} Length = 170

 Score = 55.3 bits (132), Expect = 3e-10
 Identities = 16/82 (19%), Positives = 36/82 (43%), Gaps = 2/82 (2%)

Query: 98  NGDGFKLSIPSKW-NPSKEREFPGQVLRYEDNFDSNSNVSVIITPTD-KKSITDYGSPEE 155
             DG++   P+ W     +   PG  + + D  + + N+SVII+     K++TD G+  +
Sbjct: 20  TKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSDKTLTDLGTATD 79

Query: 156 FLSKVDYLLGKQAYSGKTSSEV 177
              +    +   +   + +  +
Sbjct: 80  VGYRFMKTVNDASQGDRQAELI 101

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	179
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	99.95
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	99.62
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	99.73

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2

Probab=99.95  E-value=1.1e-29  Score=205.96  Aligned_cols=92  Identities=80%  Similarity=1.284  Sum_probs=72.0

Q ss_pred             CCCCCCCCcccccCCCeeEecCCCCCCCceeeeCCceEEeeeCCCCCCceEEEEecCCCCCcccCCChHHHHHHHHHHHH
Q 030310           86 GKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLG  165 (179)
Q Consensus        86 g~p~~~~~F~~y~~DGYsFlyPs~Wnpskev~~~G~dv~f~D~~~~~eNvsV~ispt~kksI~DlGsPee~~~~Vgy~L~  165 (179)
                      |+||..++|++|.+|||+|+||++|+++++++++|+|++|+|+++.++||+|+|+|+++++|+|||+|||||++|+|+|+
T Consensus         1 ~~~~~~~g~~~y~~~gysf~yP~~W~~~~~~~~~G~~~~f~d~~~~~~nvsV~v~p~~~~si~dlGspe~~~~~v~~~l~   80 (177)
T 1v2b_A            1 GKPKTDTDFQTYNGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLG   80 (177)
T ss_dssp             ------CCEEEEECSSEEEEEETTCEECCCCCSTTEEEEEEETTEEEEEEEEEEEECSCSSGGGGCSHHHHHHHTGGGC-
T ss_pred             CCCCCCCCceEEecCCEEEEcCCCCcccccccCCCceEEEeCCcCCCccEEEEEeCCCCCChhHCCCHHHHHHHHHHHHH
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcccCcccc
Q 030310          166 KQAYSGKTSSEV  177 (179)
Q Consensus       166 kq~~~g~t~seg  177 (179)
                      +|+++++|.+||
T Consensus        81 ~~~~~~~~~~~~   92 (177)
T 1v2b_A           81 RQAYSGKTDSEG   92 (177)
T ss_dssp             ------------
T ss_pred             HHhhcccccccC
Confidence            999999988875

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}

Probab=99.62  E-value=4.3e-20  Score=146.96  Aligned_cols=77  Identities=23%  Similarity=0.447  Sum_probs=67.5

Q ss_pred             CCCCCCcccccCCCeeEecCCCCCCCceeeeC----CceEEeeeCCCCCCceEEEEecCCC-CCcccCCChHHHHHHHHH
Q 030310           88 PKTNTDFLPYNGDGFKLSIPSKWNPSKEREFP----GQVLRYEDNFDSNSNVSVIITPTDK-KSITDYGSPEEFLSKVDY  162 (179)
Q Consensus        88 p~~~~~F~~y~~DGYsFlyPs~Wnpskev~~~----G~dv~f~D~~~~~eNvsV~ispt~k-ksI~DlGsPee~~~~Vgy  162 (179)
                      |++++.|.| ..|||+|+||++|   ++++++    |+|++|+|+++..+||+|+|+|+.+ ++|+|||+|||    |+|
T Consensus        11 ~~g~~~y~d-~~~gy~f~~P~gW---~~~~~~~~~~g~~v~f~d~~~~~~nvsV~v~p~~~~~si~d~G~pe~----va~   82 (170)
T 2lnj_A           11 IASLQRYSD-TKDGYEFLYPNGW---IGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSDKTLTDLGTATD----VGY   82 (170)
Confidence            444444444 3999999999999   778888    9999999999999999999999977 99999999999    899


Q ss_pred             HHHhhhhccc
Q 030310          163 LLGKQAYSGK  172 (179)
Q Consensus       163 ~L~kq~~~g~  172 (179)
                      +|++++++++
T Consensus        83 ~l~~~~~~~~   92 (170)
T 2lnj_A           83 RFMKTVNDAS   92 (170)
Confidence            9999988764

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}

Probab=99.73  E-value=2.6e-18  Score=134.89  Aligned_cols=74  Identities=26%  Similarity=0.456  Sum_probs=66.3

Q ss_pred             CCccccc--CCCeeEecCCCCCCCceeeeC-CceEEeeeCCCCCCceEEEEecCCC-CCcccCCChHHHHHHHHHHHHhh
Q 030310           92 TDFLPYN--GDGFKLSIPSKWNPSKEREFP-GQVLRYEDNFDSNSNVSVIITPTDK-KSITDYGSPEEFLSKVDYLLGKQ  167 (179)
Q Consensus        92 ~~F~~y~--~DGYsFlyPs~Wnpskev~~~-G~dv~f~D~~~~~eNvsV~ispt~k-ksI~DlGsPee~~~~Vgy~L~kq  167 (179)
                      .+|..|.  .|||+|+||++|   ++++++ |+|++|+|+++..+||+|+|+|+.+ ++|+|||+|||    |+++|+++
T Consensus         6 ~g~~~~~D~~~gysf~~P~~W---~~~~~~~g~~v~f~d~~~~~~~v~V~v~p~~~~~~l~~~G~~e~----va~~l~~~   78 (165)
T 2xb3_A            6 SGLQAYVDSYDGYEFLYPRGW---VQVQVEDPVDVVFHDIIETTENVSVVVNTVASTKSLEELGSPEE----VGDRLLRN   78 (165)
T ss_dssp             CCEEEEEETTTTEEEEEETTE---EEECCCTTEEEEEEESSCTTSEEEEEEEECSSCCCSGGGCCHHH----HHHHHHHH
T ss_pred             CCceEEEcCCCCEEEEcCCCC---eEecCCCCceEEEECcccCCceEEEEEecCCCCCChHHcCCHHH----HHHHHHHH
Confidence            3455555  999999999999   999998 9999999999999999999999976 99999999999    89999999


Q ss_pred             hhccc
Q 030310          168 AYSGK  172 (179)
Q Consensus       168 ~~~g~  172 (179)
                      +++++
T Consensus        79 ~~~~~   83 (165)
T 2xb3_A           79 IIAPS   83 (165)
T ss_dssp             TTSCT
T ss_pred             hhcCC
Confidence            88653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	179
d1v2ba_	171	d.107.1.2 (A:) Oxygen-evolving enhancer protein Ps	2e-32

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 171

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score =  112 bits (280), Expect = 2e-32
 Identities = 69/85 (81%), Positives = 77/85 (90%)

Query: 92  TDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYG 151
           TDF  YNGDGFKL IPSKWNP+KE E+PGQVLR+EDNFD+ SNV V ITPTDKKSITD+G
Sbjct: 1   TDFQTYNGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFG 60

Query: 152 SPEEFLSKVDYLLGKQAYSGKTSSE 176
           SPE+FLS+VDYLLG+QAYSGKT SE
Sbjct: 61  SPEQFLSQVDYLLGRQAYSGKTDSE 85

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	179
d1v2ba_	171	Oxygen-evolving enhancer protein PsbP {Common toba	99.89

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.89  E-value=7.4e-25  Score=172.44  Aligned_cols=86  Identities=80%  Similarity=1.275  Sum_probs=70.9

Q ss_pred             CCcccccCCCeeEecCCCCCCCceeeeCCceEEeeeCCCCCCceEEEEecCCCCCcccCCChHHHHHHHHHHHHhhhhcc
Q 030310           92 TDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSG  171 (179)
Q Consensus        92 ~~F~~y~~DGYsFlyPs~Wnpskev~~~G~dv~f~D~~~~~eNvsV~ispt~kksI~DlGsPee~~~~Vgy~L~kq~~~g  171 (179)
                      ++|+||+.|||+|+||++|+++++.+.+|+|++|+|+++..+||+|+|+|+++++|+|||+||+++++|++.|+++.+.+
T Consensus         1 ~~~~~y~~dgy~f~~P~~W~~~~~~~~~g~d~~f~d~~~~~~nv~V~v~p~~~~sl~~~G~p~~~~~~v~~~l~~~~~~~   80 (171)
T d1v2ba_           1 TDFQTYNGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGRQAYSG   80 (171)
T ss_dssp             CCEEEEECSSEEEEEETTCEECCCCCSTTEEEEEEETTEEEEEEEEEEEECSCSSGGGGCSHHHHHHHTGGGC-------
T ss_pred             CCcccccCCCEEEECCCCCceecccCCCCceEEEeccccCCceEEEEEecCCCcchhhccChHHHHHHHHHHHhhhhhcc
Confidence            57999999999999999999888888999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcccc
Q 030310          172 KTSSEV  177 (179)
Q Consensus       172 ~t~seg  177 (179)
                      ++..+|
T Consensus        81 ~~~~~~   86 (171)
T d1v2ba_          81 KTDSEG   86 (171)
T ss_dssp             ------
T ss_pred             cccccc
Confidence            876654