Citrus Sinensis ID: 030315

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
MDVKKPASQENLNGDESESQISHLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFETSKIIDCLEFIRSKNLHLAGFRHHDASASDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKFIKKLLLMWMVRRNLCRLTRMIYTLIFLLILALVLA
ccccccccccccccccccccccEEEEEccccEEEEEEEEEEccccccccccccccccccccEEEEEEEEcccHHHHHHHHHHHHHHHcccccccccccccEEEEEEcccHHHHHHHHHHHHcccccEEHHHHHHHHHHHHHHHHccccEEEEEccccccccccccccccHHHEEEEccc
cccccccHccccccccccccccEEEEEccccHEEEEEEEccccccccccccccccccccccEEEEEEEcHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEcccHHHHHHHHHHHHccccEEcHHHHHHHHHHHHHHHHHccccEEEEEccccccEEEcccccHHHHHHHHHHHc
mdvkkpasqenlngdesesQISHLALDIGGSLIKVVYFLRsngsggsvddsgkksdpvlegrLHFAKFETSKIIDCLEFIRSKnlhlagfrhhdasasdktlikatgggayKFADLIKEKLgvvldkedemdcLVTGANFLLKFIKKLLLMWMVRRNLCRLTRMIYTLIFLLILALVLA
mdvkkpasqenlngdeSESQISHLALDIGGSLIKVVYFLRSNgsggsvddsgkksdPVLEGRLHFAKFETSKIIDCLEFIRSKNLHLAGFrhhdasasdktlIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKFIKKLLLMWMVRRNLCRLTRMIYTLIFLLILALVLA
MDVKKPASQENLNGDESESQISHLALDIGGSLIKVVYFLRSNgsggsvddsgkksdPVLEGRLHFAKFETSKIIDCLEFIRSKNLHLAGFRHHDASASDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANfllkfikklllMWMVRRNLCRLTRMIYTlifllilalvla
**********************HLALDIGGSLIKVVYFLR******************LEGRLHFAKFETSKIIDCLEFIRSKNLHLAGFRHHDASASDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKFIKKLLLMWMVRRNLCRLTRMIYTLIFLLILALVL*
******************SQISHLALDIGGSLIKVVYFLRS*****************LEGRLHFAKFETSKIIDCLEFIRSKNLH*************KTLIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKFIKKLLLMWMVRRNLCRLTRMIYTLIFLLILALVLA
******************SQISHLALDIGGSLIKVVYFLRSNG************DPVLEGRLHFAKFETSKIIDCLEFIRSKNLHLAGFRHHDASASDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKFIKKLLLMWMVRRNLCRLTRMIYTLIFLLILALVLA
*****PASQENLNGDESESQISHLALDIGGSLIKVVYFLRSN***************VLEGRLHFAKFETSKIIDCLEFIRSKNLHLAGFR*HDASASDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKFIKKLLLMWMVRRNLCRLTRMIYTLIFLLILALVLA
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHo
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHo
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MDVKKPASQENLNGDESESQISHLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFETSKIIDCLEFIRSKNLHLAGFRHHDASASDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKFIKKLLLMWMVRRNLCRLTRMIYTLIFLLILALVLA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query179 2.2.26 [Sep-21-2011]
O80765 383 Pantothenate kinase 1 OS= yes no 0.731 0.342 0.540 3e-33
Q8L5Y9 901 Pantothenate kinase 2 OS= no no 0.670 0.133 0.557 1e-31
Q923S8 773 Pantothenate kinase 4 OS= yes no 0.653 0.151 0.401 1e-18
Q9NVE7 773 Pantothenate kinase 4 OS= yes no 0.614 0.142 0.414 2e-18
Q4R4U1 773 Pantothenate kinase 4 OS= N/A no 0.625 0.144 0.427 2e-18
Q80YV4 820 Pantothenate kinase 4 OS= no no 0.653 0.142 0.401 3e-18
Q5R5F8 773 Pantothenate kinase 4 OS= yes no 0.625 0.144 0.427 3e-18
O74962 403 Pantothenate kinase OS=Sc yes no 0.765 0.339 0.385 2e-17
Q04430 367 Pantothenate kinase CAB1 yes no 0.592 0.288 0.303 8e-08
Q8R2W9 370 Pantothenate kinase 3 OS= no no 0.625 0.302 0.309 3e-07
>sp|O80765|PANK1_ARATH Pantothenate kinase 1 OS=Arabidopsis thaliana GN=COAA PE=2 SV=2 Back     alignment and function desciption
 Score =  140 bits (354), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 73/135 (54%), Positives = 92/135 (68%), Gaps = 4/135 (2%)

Query: 19  SQISHLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLEGRLHFAKFETSKIIDCLE 78
           +QISHLALDIGG+LIK+VYF     + G   +  +    V++GRL FAKFET KI DCLE
Sbjct: 4   TQISHLALDIGGTLIKLVYF----SANGDYSEESRNGCSVVKGRLCFAKFETRKIDDCLE 59

Query: 79  FIRSKNLHLAGFRHHDASASDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGA 138
           FIR   LH +G +  +    DK  +KATGGGA+KFADL KEKLG++ DKEDEM  LV G 
Sbjct: 60  FIRFNILHHSGVQQPNGEGHDKLYVKATGGGAFKFADLFKEKLGILFDKEDEMCSLVGGV 119

Query: 139 NFLLKFIKKLLLMWM 153
           NFLLK + +    ++
Sbjct: 120 NFLLKTVPREAFTYL 134
Plays a role in the physiological regulation of the intracellular CoA concentration.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 3EC: 3
>sp|Q8L5Y9|PANK2_ARATH Pantothenate kinase 2 OS=Arabidopsis thaliana GN=At4g32180 PE=1 SV=2 Back     alignment and function description
>sp|Q923S8|PANK4_RAT Pantothenate kinase 4 OS=Rattus norvegicus GN=Pank4 PE=1 SV=1 Back     alignment and function description
>sp|Q9NVE7|PANK4_HUMAN Pantothenate kinase 4 OS=Homo sapiens GN=PANK4 PE=1 SV=1 Back     alignment and function description
>sp|Q4R4U1|PANK4_MACFA Pantothenate kinase 4 OS=Macaca fascicularis GN=PANK4 PE=2 SV=2 Back     alignment and function description
>sp|Q80YV4|PANK4_MOUSE Pantothenate kinase 4 OS=Mus musculus GN=Pank4 PE=1 SV=2 Back     alignment and function description
>sp|Q5R5F8|PANK4_PONAB Pantothenate kinase 4 OS=Pongo abelii GN=PANK4 PE=2 SV=1 Back     alignment and function description
>sp|O74962|PANK_SCHPO Pantothenate kinase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC4B4.01c PE=1 SV=1 Back     alignment and function description
>sp|Q04430|PANK_YEAST Pantothenate kinase CAB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CAB1 PE=1 SV=1 Back     alignment and function description
>sp|Q8R2W9|PANK3_MOUSE Pantothenate kinase 3 OS=Mus musculus GN=Pank3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query179
255568790 414 Pantothenate kinase, putative [Ricinus c 0.854 0.369 0.554 5e-41
297739056 419 unnamed protein product [Vitis vinifera] 0.737 0.315 0.597 3e-39
224107821 398 predicted protein [Populus trichocarpa] 0.737 0.331 0.54 2e-37
449469539 911 PREDICTED: pantothenate kinase 2-like [C 0.692 0.136 0.586 3e-36
255540653 907 Pantothenate kinase, putative [Ricinus c 0.692 0.136 0.611 3e-36
224284340 895 unknown [Picea sitchensis] 0.703 0.140 0.618 2e-35
356567636 413 PREDICTED: pantothenate kinase 2-like [G 0.849 0.368 0.493 3e-35
225457017 906 PREDICTED: pantothenate kinase 2-like [V 0.692 0.136 0.583 5e-35
297733772 988 unnamed protein product [Vitis vinifera] 0.692 0.125 0.583 5e-35
224135815 872 predicted protein [Populus trichocarpa] 0.703 0.144 0.577 5e-35
>gi|255568790|ref|XP_002525366.1| Pantothenate kinase, putative [Ricinus communis] gi|223535329|gb|EEF37004.1| Pantothenate kinase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  172 bits (436), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 92/166 (55%), Positives = 104/166 (62%), Gaps = 13/166 (7%)

Query: 1   MDVKKPASQENLNGDESESQISHLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDP--- 57
           MD+K      N    +S  QISHLALDIGGSLIKVVY  R + +   ++     SD    
Sbjct: 1   MDLKDIRLDPNSESTQSIGQISHLALDIGGSLIKVVYLSRYSNNSADIEGESSSSDDDTL 60

Query: 58  ----------VLEGRLHFAKFETSKIIDCLEFIRSKNLHLAGFRHHDASASDKTLIKATG 107
                     +LEGRLHFAKFETSKI DCLEFI SK LHL GF+ H+    D+  IKATG
Sbjct: 61  VLSNVNGEHHILEGRLHFAKFETSKINDCLEFISSKKLHLGGFQRHENPTKDRNFIKATG 120

Query: 108 GGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKFIKKLLLMWM 153
           GGAYKF D  KEKLG  LDKEDEMDCLV GANFLLK +      +M
Sbjct: 121 GGAYKFTDFFKEKLGFSLDKEDEMDCLVAGANFLLKAVHHEAYTYM 166

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297739056|emb|CBI28545.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224107821|ref|XP_002314614.1| predicted protein [Populus trichocarpa] gi|222863654|gb|EEF00785.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449469539|ref|XP_004152477.1| PREDICTED: pantothenate kinase 2-like [Cucumis sativus] gi|449520489|ref|XP_004167266.1| PREDICTED: pantothenate kinase 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255540653|ref|XP_002511391.1| Pantothenate kinase, putative [Ricinus communis] gi|223550506|gb|EEF51993.1| Pantothenate kinase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224284340|gb|ACN39905.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
>gi|356567636|ref|XP_003552023.1| PREDICTED: pantothenate kinase 2-like [Glycine max] Back     alignment and taxonomy information
>gi|225457017|ref|XP_002279079.1| PREDICTED: pantothenate kinase 2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297733772|emb|CBI15019.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224135815|ref|XP_002322167.1| predicted protein [Populus trichocarpa] gi|222869163|gb|EEF06294.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query179
TAIR|locus:2195638 383 PANK1 "pantothenate kinase 1" 0.653 0.305 0.561 3.1e-28
TAIR|locus:2116490 901 PANK2 "pantothenate kinase 2" 0.642 0.127 0.536 1.6e-24
DICTYBASE|DDB_G0290401 685 DDB_G0290401 "pantothenate kin 0.575 0.150 0.436 4.5e-18
POMBASE|SPBC4B4.01c 403 SPBC4B4.01c "fumble family pan 0.648 0.287 0.4 1.5e-17
ASPGD|ASPL0000076011 420 panK [Emericella nidulans (tax 0.564 0.240 0.449 2.8e-17
UNIPROTKB|G4NJ43 588 MGG_17976 "Uncharacterized pro 0.569 0.173 0.420 4.5e-15
ZFIN|ZDB-GENE-040426-1592 774 pank4 "pantothenate kinase 4" 0.581 0.134 0.398 6.6e-14
UNIPROTKB|E1BV98 771 PANK4 "Uncharacterized protein 0.581 0.134 0.398 8.3e-14
UNIPROTKB|I3LPY8 780 PANK4 "Uncharacterized protein 0.581 0.133 0.392 1e-12
UNIPROTKB|E2QXZ0 773 PANK4 "Uncharacterized protein 0.581 0.134 0.392 1.3e-12
TAIR|locus:2195638 PANK1 "pantothenate kinase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 68/121 (56%), Positives = 81/121 (66%)

Query:    19 SQISHLALDIGGSLIKVVYFLRSNXXXXXXXXXXXXXXPVLEGRLHFAKFETSKIIDCLE 78
             +QISHLALDIGG+LIK+VYF  +                V++GRL FAKFET KI DCLE
Sbjct:     4 TQISHLALDIGGTLIKLVYFSANGDYSEESRNGCS----VVKGRLCFAKFETRKIDDCLE 59

Query:    79 FIRSKNLHLAGFRHHDASASDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGA 138
             FIR   LH +G +  +    DK  +KATGGGA+KFADL KEKLG++ DKEDEM  LV G 
Sbjct:    60 FIRFNILHHSGVQQPNGEGHDKLYVKATGGGAFKFADLFKEKLGILFDKEDEMCSLVGGV 119

Query:   139 N 139
             N
Sbjct:   120 N 120
GO:0004594 "pantothenate kinase activity" evidence=IEA;ISS;IDA
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006085 "acetyl-CoA biosynthetic process" evidence=ISS
GO:0015937 "coenzyme A biosynthetic process" evidence=IEA;IDA
TAIR|locus:2116490 PANK2 "pantothenate kinase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0290401 DDB_G0290401 "pantothenate kinase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
POMBASE|SPBC4B4.01c SPBC4B4.01c "fumble family pantothenate kinase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ASPGD|ASPL0000076011 panK [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|G4NJ43 MGG_17976 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1592 pank4 "pantothenate kinase 4" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BV98 PANK4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|I3LPY8 PANK4 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2QXZ0 PANK4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.1.33LOW CONFIDENCE prediction!
3rd Layer2.7.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query179
PLN02920 398 PLN02920, PLN02920, pantothenate kinase 1 3e-61
PLN02902 876 PLN02902, PLN02902, pantothenate kinase 3e-47
pfam03630 329 pfam03630, Fumble, Fumble 1e-36
TIGR00555 296 TIGR00555, panK_eukar, pantothenate kinase, eukary 3e-24
COG5146 342 COG5146, PanK, Pantothenate kinase, acetyl-CoA reg 6e-16
PTZ00297 1452 PTZ00297, PTZ00297, pantothenate kinase; Provision 5e-07
>gnl|CDD|215498 PLN02920, PLN02920, pantothenate kinase 1 Back     alignment and domain information 
 Score =  194 bits (495), Expect = 3e-61
 Identities = 91/135 (67%), Positives = 98/135 (72%), Gaps = 4/135 (2%)

Query: 11  NLNGDESESQISHLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKS--DPVLEGRLHFAKF 68
             +G+ S  QISHLALDIGGSLIK+VYF  S  SG S D     S     + GRLHFAKF
Sbjct: 8   EGDGNSSPIQISHLALDIGGSLIKLVYF--SRNSGDSEDPRNDSSVKSDGVNGRLHFAKF 65

Query: 69  ETSKIIDCLEFIRSKNLHLAGFRHHDASASDKTLIKATGGGAYKFADLIKEKLGVVLDKE 128
           ET KI DCLEFI S  LH  GF+HH+    DK  IKATGGGAYKFADL KEKLG+ LDKE
Sbjct: 66  ETRKINDCLEFISSNKLHHGGFQHHENPTHDKNFIKATGGGAYKFADLFKEKLGISLDKE 125

Query: 129 DEMDCLVTGANFLLK 143
           DEMDCLVTGANFLLK
Sbjct: 126 DEMDCLVTGANFLLK 140

Length = 398
>gnl|CDD|215489 PLN02902, PLN02902, pantothenate kinase Back     alignment and domain information
>gnl|CDD|217646 pfam03630, Fumble, Fumble Back     alignment and domain information
>gnl|CDD|233021 TIGR00555, panK_eukar, pantothenate kinase, eukaryotic/staphyloccocal type Back     alignment and domain information
>gnl|CDD|227475 COG5146, PanK, Pantothenate kinase, acetyl-CoA regulated [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|140318 PTZ00297, PTZ00297, pantothenate kinase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 179
KOG2201 371 consensus Pantothenate kinase PanK and related pro 100.0
PLN02920 398 pantothenate kinase 1 100.0
PF03630 341 Fumble: Fumble ; InterPro: IPR004567 Pantothenate 100.0
PLN02902 876 pantothenate kinase 100.0
PTZ00297 1452 pantothenate kinase; Provisional 100.0
COG5146 342 PanK Pantothenate kinase, acetyl-CoA regulated [Co 100.0
TIGR00555 279 panK_eukar pantothenate kinase, eukaryotic/staphyl 99.97
PRK13317 277 pantothenate kinase; Provisional 99.82
TIGR03286 404 methan_mark_15 putative methanogenesis marker prot 98.12
smart0073299 YqgFc Likely ribonuclease with RNase H fold. YqgF 96.27
TIGR03192 293 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s 96.23
TIGR01175348 pilM type IV pilus assembly protein PilM. This pro 95.63
COG1940 314 NagC Transcriptional regulator/sugar kinase [Trans 94.96
PRK14101 638 bifunctional glucokinase/RpiR family transcription 94.57
TIGR00241 248 CoA_E_activ CoA-substrate-specific enzyme activase 94.42
PRK12408 336 glucokinase; Provisional 94.41
TIGR02261 262 benz_CoA_red_D benzoyl-CoA reductase, bcr type, su 93.86
PF05378176 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal r 93.69
PRK13318258 pantothenate kinase; Reviewed 93.03
PRK13321256 pantothenate kinase; Reviewed 92.05
PRK00292 316 glk glucokinase; Provisional 90.5
PRK09557 301 fructokinase; Reviewed 90.04
TIGR00744 318 ROK_glcA_fam ROK family protein (putative glucokin 89.4
PRK00109138 Holliday junction resolvase-like protein; Reviewed 88.78
PRK13928336 rod shape-determining protein Mbl; Provisional 88.68
PRK13311 256 N-acetyl-D-glucosamine kinase; Provisional 88.6
PF02685 316 Glucokinase: Glucokinase; InterPro: IPR003836 Gluc 88.39
PRK13930335 rod shape-determining protein MreB; Provisional 86.09
PF11104340 PilM_2: Type IV pilus assembly protein PilM;; PDB: 85.78
PF00480179 ROK: ROK family; InterPro: IPR000600 A family of b 85.51
TIGR03739320 PRTRC_D PRTRC system protein D. A novel genetic sy 85.24
PRK13929335 rod-share determining protein MreBH; Provisional 85.06
PRK13310 303 N-acetyl-D-glucosamine kinase; Provisional 84.6
TIGR00749 316 glk glucokinase, proteobacterial type. This model 84.48
PF06723326 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba 84.36
COG1924 396 Activator of 2-hydroxyglutaryl-CoA dehydratase (HS 83.45
PRK09698 302 D-allose kinase; Provisional 81.66
PTZ00288 405 glucokinase 1; Provisional 80.08
>KOG2201 consensus Pantothenate kinase PanK and related proteins [Coenzyme transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.6e-44  Score=314.16  Aligned_cols=158  Identities=41%  Similarity=0.567  Sum_probs=130.5

Q ss_pred             CCCCCCCCeEEEecCCceeEEEEEeecCCCCCCCC----CCC-CCCCCCCCCeEEEEEeeccCHHHHHHHHHhhhhhccc
Q 030315           15 DESESQISHLALDIGGSLIKVVYFLRSNGSGGSVD----DSG-KKSDPVLEGRLHFAKFETSKIIDCLEFIRSKNLHLAG   89 (179)
Q Consensus        15 ~~~~~~~~~~aiDIGGTL~KlVYf~~~~~~~~~~~----~~g-~~~~~~~~G~LhF~kFeT~~i~~~i~fik~~~l~~~~   89 (179)
                      ++ .+.++|+|+||||||+|+|||++.+...++..    .++ .+..+..+|||+|++|+|.+|+.|++||+.+..+.. 
T Consensus        17 ~~-~~~~~~~~~DigGtl~KlvY~s~~~~~~~~~~~~~~~n~~~~~~~~~~~rl~~~~~e~~~~~~~L~Fi~~~~~~~~-   94 (371)
T KOG2201|consen   17 NN-KPMISHFAMDIGGTLVKLVYFSPVDISPEEEESEVILNGAYGKTGYRDGRLHFINFETFKIDGCLNFIRFNITDHP-   94 (371)
T ss_pred             cc-cccCceEEEecCCcEEEEEEEecCCCCcchhhhhcccccccccccccccEEEEEEeeecCccchhHHhhcchhhcc-
Confidence            45 77899999999999999999999987543221    122 223456899999999999999999999999865442 


Q ss_pred             ccccCCCCCCceEEEEecCchHhhHHHHHHHhCCCcceeehhhHHHHhHHHHHHhcCCccEEEecCCccceec------c
Q 030315           90 FRHHDASASDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKFIKKLLLMWMVRRNLCRLT------R  163 (179)
Q Consensus        90 ~~~~~~~~~~~~~i~aTGGGA~Kf~dl~~~~lgv~~~k~DEMecLI~Gl~fLL~~i~~E~Fty~~~~~~~~~~------~  163 (179)
                         .++.....++|||||||||||+|+|++.|+++++|+|||+|||+|++|+++++|+|||||+++..+..++      .
T Consensus        95 ---~k~~~~~~~~i~aTGGGA~Kf~d~~~~~l~v~l~k~Dem~~LI~G~~f~l~~i~~E~fty~~~~~~~~~~~~~~~~d  171 (371)
T KOG2201|consen   95 ---VKNFSKLTTVICATGGGAYKFEDLFREILDVKLDKEDEMDCLIKGLNFLLSNIPAECFTYENDEDEEVEFQTNFCLD  171 (371)
T ss_pred             ---ccccccceeEEEEeCCcceeHHHHHHHHhCceEeehhHHHHHHhhhHHHHhcCccceEEEecCCCcceecccCCccC
Confidence               1122223578999999999999999999999999999999999999999999999999999987654432      5


Q ss_pred             cCcchhhHhhhhhh
Q 030315          164 MIYTLIFLLILALV  177 (179)
Q Consensus       164 ~~yp~~~~ni~~~~  177 (179)
                      +|||||||||||-|
T Consensus       172 ~~yPyLLVNIGSGV  185 (371)
T KOG2201|consen  172 SPYPYLLVNIGSGV  185 (371)
T ss_pred             CCCceEEEEcCCCe
Confidence            68999999999976

>PLN02920 pantothenate kinase 1 Back     alignment and domain information
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway Back     alignment and domain information
>PLN02902 pantothenate kinase Back     alignment and domain information
>PTZ00297 pantothenate kinase; Provisional Back     alignment and domain information
>COG5146 PanK Pantothenate kinase, acetyl-CoA regulated [Coenzyme metabolism] Back     alignment and domain information
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type Back     alignment and domain information
>PRK13317 pantothenate kinase; Provisional Back     alignment and domain information
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15 Back     alignment and domain information
>smart00732 YqgFc Likely ribonuclease with RNase H fold Back     alignment and domain information
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit Back     alignment and domain information
>TIGR01175 pilM type IV pilus assembly protein PilM Back     alignment and domain information
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional Back     alignment and domain information
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative Back     alignment and domain information
>PRK12408 glucokinase; Provisional Back     alignment and domain information
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D Back     alignment and domain information
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family Back     alignment and domain information
>PRK13318 pantothenate kinase; Reviewed Back     alignment and domain information
>PRK13321 pantothenate kinase; Reviewed Back     alignment and domain information
>PRK00292 glk glucokinase; Provisional Back     alignment and domain information
>PRK09557 fructokinase; Reviewed Back     alignment and domain information
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase) Back     alignment and domain information
>PRK00109 Holliday junction resolvase-like protein; Reviewed Back     alignment and domain information
>PRK13928 rod shape-determining protein Mbl; Provisional Back     alignment and domain information
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional Back     alignment and domain information
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2 Back     alignment and domain information
>PRK13930 rod shape-determining protein MreB; Provisional Back     alignment and domain information
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A Back     alignment and domain information
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames [] Back     alignment and domain information
>TIGR03739 PRTRC_D PRTRC system protein D Back     alignment and domain information
>PRK13929 rod-share determining protein MreBH; Provisional Back     alignment and domain information
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional Back     alignment and domain information
>TIGR00749 glk glucokinase, proteobacterial type Back     alignment and domain information
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes Back     alignment and domain information
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism] Back     alignment and domain information
>PRK09698 D-allose kinase; Provisional Back     alignment and domain information
>PTZ00288 glucokinase 1; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query179
3mk6_A 376 Substrate And Inhibitor Binding To Pank Length = 37 5e-06
2i7p_A 362 Crystal Structure Of Human Pank3 In Complex With Ac 5e-06
3sms_A 382 Human Pantothenate Kinase 3 In Complex With A Panto 5e-06
3smp_A 386 Monoclinic Crystal Structure Of Human Pantothenate 1e-04
2i7n_A 360 Crystal Structure Of Human Pank1 Alpha: The Catalyt 5e-04
>pdb|3MK6|A Chain A, Substrate And Inhibitor Binding To Pank Length = 376 Back     alignment and structure 
Iteration: 1

 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 61  GRLHFAKFETSKIIDCLEFIRSKNLHLAGFRHHDASASDKTLIKATGGGAYKFADLIKEK 120
           G LHF +F T  +   ++  R KN            ++ +T++ ATGGGAYKF    +  
Sbjct: 88  GNLHFIRFPTQDLPTFIQMGRDKNF-----------STLQTVLCATGGGAYKFEKDFRTI 136
Query: 121 LGVVLDKEDEMDCLVTG 137
             + L K DE+DCLV G
Sbjct: 137 GNLHLHKLDELDCLVKG 153
>pdb|2I7P|A Chain A, Crystal Structure Of Human Pank3 In Complex With Accoa Length = 362 Back     alignment and structure
>pdb|3SMS|A Chain A, Human Pantothenate Kinase 3 In Complex With A Pantothenate Analog Length = 382 Back     alignment and structure
>pdb|3SMP|A Chain A, Monoclinic Crystal Structure Of Human Pantothenate Kinase 1 Alpha Length = 386 Back     alignment and structure
>pdb|2I7N|A Chain A, Crystal Structure Of Human Pank1 Alpha: The Catalytic Core Domain In Complex With Accoa Length = 360 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query179
2i7n_A 360 Pantothenate kinase 1; PANK, transferase; HET: ACO 1e-27
2ews_A 287 Pantothenate kinase; PANK, structural genomics, st 2e-11
>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A* Length = 360 Back     alignment and structure
 Score =  105 bits (262), Expect = 1e-27
 Identities = 34/156 (21%), Positives = 58/156 (37%), Gaps = 40/156 (25%)

Query: 21  ISHLALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPV---------------------- 58
                +DIGG+L+K+VYF   + +     +  +    +                      
Sbjct: 3   FPWFGMDIGGTLVKLVYFEPKDITAEEEQEEVENLKSIRKYLTSNTAYGKTGIRDVHLEL 62

Query: 59  -------LEGRLHFAKFETSKIIDCLEFIRSKNLHLAGFRHHDASASDKTLIKATGGGAY 111
                   +G LHF +F +  +   ++    KN             S  T + ATGGGA+
Sbjct: 63  KNLTMCGRKGNLHFIRFPSCAMHRFIQMGSEKNFS-----------SLHTTLCATGGGAF 111

Query: 112 KFADLIKEKLGVVLDKEDEMDCLVTGANFLLKFIKK 147
           KF +  +    + L K DE+DCL+ G  ++      
Sbjct: 112 KFEEDFRMIADLQLHKLDELDCLIQGLLYVDSVGFN 147
>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14 Length = 287 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query179
2i7n_A 360 Pantothenate kinase 1; PANK, transferase; HET: ACO 100.0
2ews_A 287 Pantothenate kinase; PANK, structural genomics, st 99.84
1hux_A 270 Activator of (R)-2-hydroxyglutaryl-COA dehydratase 97.1
4ehu_A 276 Activator of 2-hydroxyisocaproyl-COA dehydratase; 96.86
3epq_A 302 Putative fructokinase; SCRK, ADP binding, PSI2, MC 94.68
2e2o_A 299 Hexokinase; acetate and sugar kinases, HSP70, acti 92.49
2gup_A 292 ROK family protein; sugar kinase, streptococcus pn 92.41
3vgl_A 321 Glucokinase; ROK family, transferase; HET: BGC ANP 91.92
2qm1_A 326 Glucokinase; alpha-beta structure, putative helix- 91.87
2aa4_A 289 Mannac kinase, putative N-acetylmannosamine kinase 91.55
4htl_A 297 Beta-glucoside kinase; structural genomics, sugar 91.31
3djc_A 266 Type III pantothenate kinase; structural genomics, 90.68
3bex_A 249 Type III pantothenate kinase; actin-like fold, ATP 90.54
1zbs_A 291 Hypothetical protein PG1100; alpha-beta protein., 90.19
2ch5_A 347 NAGK protein; transferase, N-acetylglucosamine, gl 89.96
1sz2_A 332 Glucokinase, glucose kinase; ATP-dependent, glucos 89.93
4apw_A329 ALP12; actin-like protein; 19.70A {Clostridium tet 89.9
4db3_A 327 Glcnac kinase, N-acetyl-D-glucosamine kinase; stru 89.74
3vov_A 302 Glucokinase, hexokinase; ROK, sugar kinase, transf 89.62
1z05_A 429 Transcriptional regulator, ROK family; structural 89.61
3h1q_A272 Ethanolamine utilization protein EUTJ; ethanolamin 89.14
2hoe_A 380 N-acetylglucosamine kinase; TM1224, structural gen 88.93
1z6r_A 406 MLC protein; transcriptional repressor, ROK family 86.91
2yhx_A 457 Hexokinase B; transferase(phosphoryl,alcohol accep 86.26
2yhw_A 343 Bifunctional UDP-N-acetylglucosamine 2-epimerase/N 85.78
2h3g_X 268 Biosynthetic protein; pantothenate kinase, anthrax 84.84
3lm2_A226 Putative kinase; structural genomics, joint center 83.29
1cza_N 917 Hexokinase type I; structurally homologous domains 82.97
3r8e_A 321 Hypothetical sugar kinase; ribonuclease H-like mot 81.24
>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A* Back     alignment and structure
Probab=100.00  E-value=5e-39  Score=284.04  Aligned_cols=148  Identities=26%  Similarity=0.377  Sum_probs=103.8

Q ss_pred             CCCCeEEEecCCceeEEEEEeecCCCCC-------CC-------------CCCCCCCC---------CCCCCeEEEEEee
Q 030315           19 SQISHLALDIGGSLIKVVYFLRSNGSGG-------SV-------------DDSGKKSD---------PVLEGRLHFAKFE   69 (179)
Q Consensus        19 ~~~~~~aiDIGGTL~KlVYf~~~~~~~~-------~~-------------~~~g~~~~---------~~~~G~LhF~kFe   69 (179)
                      +++|||||||||||+|||||+|.+...+       +.             .++|.++.         ..++|+|||++||
T Consensus         1 ~~~~~~~iDiGGtL~Klvy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~F~~f~   80 (360)
T 2i7n_A            1 PPFPWFGMDIGGTLVKLVYFEPKDITAEEEQEEVENLKSIRKYLTSNTAYGKTGIRDVHLELKNLTMCGRKGNLHFIRFP   80 (360)
T ss_dssp             --CCEEEEEECSSEEEEEEEEECC------------CCSHHHHHHHCSBCSSSCEECGGGCEEEEEC--CEEEEEEEEEE
T ss_pred             CCCCEEEEEeCCceEEEEEEeecCCccccccccccccccchhhccccccccccCccccccccccccccCcCceEEEEEee
Confidence            4689999999999999999999753111       00             11344442         2346999999999


Q ss_pred             ccCHHHHHHHHHhhhhhcccccccCCCCCCceEEEEecCchHhhHHHHHHHhCCCcceeehhhHHHHhHHHHH---HhcC
Q 030315           70 TSKIIDCLEFIRSKNLHLAGFRHHDASASDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLL---KFIK  146 (179)
Q Consensus        70 T~~i~~~i~fik~~~l~~~~~~~~~~~~~~~~~i~aTGGGA~Kf~dl~~~~lgv~~~k~DEMecLI~Gl~fLL---~~i~  146 (179)
                      |++|++|++|++++++..           ...+|+||||||+||.+.|++++|+++.++|||+|+++|++||+   .++|
T Consensus        81 t~~~~~~l~~~~~~~~~~-----------~~~~i~aTGgGa~k~~~~~~~~~g~~~~k~dE~~c~~~G~~~l~~~~~~~~  149 (360)
T 2i7n_A           81 SCAMHRFIQMGSEKNFSS-----------LHTTLCATGGGAFKFEEDFRMIADLQLHKLDELDCLIQGLLYVDSVGFNGK  149 (360)
T ss_dssp             GGGHHHHHHHC-----------------------CEESTTTTGGGTTC-------CCBCCHHHHHHHHHHHHHHHCBTTB
T ss_pred             hhhHHHHHHHHHHcCCCc-----------cCcEEEEECCcHHHHHHHHHHHhCCCcceecHHHHHHHHHHHHhcccccCC
Confidence            999999999998876542           23679999999999999999999999999999999999999999   4789


Q ss_pred             CccEEEecCCcccee------cccCcchhhHhhhhhh
Q 030315          147 KLLLMWMVRRNLCRL------TRMIYTLIFLLILALV  177 (179)
Q Consensus       147 ~E~Fty~~~~~~~~~------~~~~yp~~~~ni~~~~  177 (179)
                      .|+|||+++.+..++      .+++||||||||||-|
T Consensus       150 ~e~~t~~~~~~~~~~~~~~~~~~~~~PyllVnIGsGv  186 (360)
T 2i7n_A          150 PECYYFENPTNPELCQKKPYCLDNPYPMLLVNMGSGV  186 (360)
T ss_dssp             CSEEEEESTTCTTTCEEEEECCSSCCSEEEEEESSSE
T ss_pred             ceeEEeccccccccccccccccccCCceEEEEeCCCc
Confidence            999999986653332      3678999999999854
>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14 Back     alignment and structure
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5 Back     alignment and structure
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A Back     alignment and structure
>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A* Back     alignment and structure
>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10 Back     alignment and structure
>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A* Back     alignment and structure
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis} Back     alignment and structure
>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10 Back     alignment and structure
>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes} Back     alignment and structure
>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp} Back     alignment and structure
>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A Back     alignment and structure
>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5 Back     alignment and structure
>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A* Back     alignment and structure
>1sz2_A Glucokinase, glucose kinase; ATP-dependent, glucose binding, transferase; HET: MSE BGC; 2.20A {Escherichia coli} SCOP: c.55.1.7 PDB: 1q18_A* Back     alignment and structure
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} Back     alignment and structure
>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus} Back     alignment and structure
>3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus} Back     alignment and structure
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 Back     alignment and structure
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} Back     alignment and structure
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 Back     alignment and structure
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A Back     alignment and structure
>2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG; 2.10A {Saccharomyces cerevisiae} SCOP: i.12.1.1 PDB: 1hkg_A Back     alignment and structure
>2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A Back     alignment and structure
>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str} Back     alignment and structure
>3lm2_A Putative kinase; structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2, transf; HET: MSE; 1.70A {Agrobacterium tumefaciens} Back     alignment and structure
>1cza_N Hexokinase type I; structurally homologous domains, transferase; HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3 c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A* 1hkc_A* 1bg3_A* 2nzt_A* Back     alignment and structure
>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 179
d2i7na1146 c.55.1.14 (A:236-381) Pantothenate kinase 1, PANK1 9e-38
d2ewsa1 267 c.55.1.14 (A:1-267) Type II pantothenate kinase, C 0.001
>d2i7na1 c.55.1.14 (A:236-381) Pantothenate kinase 1, PANK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 146 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Fumble-like
domain: Pantothenate kinase 1, PANK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (314), Expect = 9e-38
 Identities = 34/149 (22%), Positives = 58/149 (38%), Gaps = 40/149 (26%)

Query: 24  LALDIGGSLIKVVYFLRSNGSGGSVDDSGKKSDPVLE----------------------- 60
             +DIGG+L+K+VYF   + +     +  +    + +                       
Sbjct: 4   FGMDIGGTLVKLVYFEPKDITAEEEQEEVENLKSIRKYLTSNTAYGKTGIRDVHLELKNL 63

Query: 61  ------GRLHFAKFETSKIIDCLEFIRSKNLHLAGFRHHDASASDKTLIKATGGGAYKFA 114
                 G LHF +F +  +   ++    KN             S  T + ATGGGA+KF 
Sbjct: 64  TMCGRKGNLHFIRFPSCAMHRFIQMGSEKNFS-----------SLHTTLCATGGGAFKFE 112

Query: 115 DLIKEKLGVVLDKEDEMDCLVTGANFLLK 143
           +  +    + L K DE+DCL+ G  ++  
Sbjct: 113 EDFRMIADLQLHKLDELDCLIQGLLYVDS 141
>d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW {Staphylococcus aureus [TaxId: 1280]} Length = 267 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query179
d2i7na1146 Pantothenate kinase 1, PANK1 {Human (Homo sapiens) 100.0
d2ewsa1 267 Type II pantothenate kinase, CoaW {Staphylococcus 98.64
d1q18a1110 Glucokinase Glk {Escherichia coli [TaxId: 562]} 97.25
d1xc3a1118 Putative fructokinase YhdR {Bacillus subtilis [Tax 97.19
d1huxa_ 259 Hydroxyglutaryl-CoA dehydratase component A {Acida 96.51
d2ap1a2117 Putative regulator protein YcfX {Salmonella typhim 96.43
d2aa4a1119 N-acetylmannosamine kinase NanK {Escherichia coli 95.44
d2gupa1114 Hypothetical protein SP2142 {Streptococcus pneumon 95.43
d1sz2a1 319 Glucokinase Glk {Escherichia coli [TaxId: 562]} 93.91
d1zc6a1114 Probable N-acetylglucosamine kinase CV2896 {Chromo 92.59
d1woqa1129 Inorganic polyphosphate/ATP-glucomannokinase PPGMK 88.76
d2f9wa2114 Type III pantothenate kinase, CoaX {Pseudomonas ae 88.62
d3bexa1118 Type III pantothenate kinase, CoaX {Thermotoga mar 87.26
d1z05a3128 Transcriptional regulator VC2007 {Vibrio cholerae 83.58
d2zgya2163 Plasmid segregation protein ParM {Escherichia coli 82.08
>d2i7na1 c.55.1.14 (A:236-381) Pantothenate kinase 1, PANK1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Fumble-like
domain: Pantothenate kinase 1, PANK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.9e-44  Score=278.03  Aligned_cols=113  Identities=30%  Similarity=0.528  Sum_probs=76.2

Q ss_pred             CCeEEEecCCceeEEEEEeecCCCCCCC--------------------CCCCCCC---------CCCCCCeEEEEEeecc
Q 030315           21 ISHLALDIGGSLIKVVYFLRSNGSGGSV--------------------DDSGKKS---------DPVLEGRLHFAKFETS   71 (179)
Q Consensus        21 ~~~~aiDIGGTL~KlVYf~~~~~~~~~~--------------------~~~g~~~---------~~~~~G~LhF~kFeT~   71 (179)
                      .|||||||||||||||||+|.+...++.                    ..++.++         .+.++|||||++|||+
T Consensus         1 ~p~faiDIGGSL~KlVYfsp~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~G~LhF~kFeT~   80 (146)
T d2i7na1           1 FPWFGMDIGGTLVKLVYFEPKDITAEEEQEEVENLKSIRKYLTSNTAYGKTGIRDVHLELKNLTMCGRKGNLHFIRFPSC   80 (146)
T ss_dssp             CCEEEEEECSSEEEEEEEEECC------------CCSHHHHHHHCSBCSSSCEECGGGCEEEEEC--CEEEEEEEEEEGG
T ss_pred             CCeEEEEeCCceEEEEEEecCCCccccccccchhhhhhhhhccccccccccCCcchhhhhccccccCCCceEEEEEeehh
Confidence            4899999999999999999976422110                    0122222         1345799999999999


Q ss_pred             CHHHHHHHHHhhhhhcccccccCCCCCCceEEEEecCchHhhHHHHHHHhCCCcceeehhhHHHHhHHHHHHh
Q 030315           72 KIIDCLEFIRSKNLHLAGFRHHDASASDKTLIKATGGGAYKFADLIKEKLGVVLDKEDEMDCLVTGANFLLKF  144 (179)
Q Consensus        72 ~i~~~i~fik~~~l~~~~~~~~~~~~~~~~~i~aTGGGA~Kf~dl~~~~lgv~~~k~DEMecLI~Gl~fLL~~  144 (179)
                      +|++|++||++++++..           .++|+|||||||||+++|+++||++++|+|||+|||+|++||.+-
T Consensus        81 ~i~~~l~fi~~~~~~~~-----------~~~I~ATGGGA~Kf~~~~~~~Lgv~v~k~DEM~cLI~Gl~Fl~~~  142 (146)
T d2i7na1          81 AMHRFIQMGSEKNFSSL-----------HTTLCATGGGAFKFEEDFRMIADLQLHKLDELDCLIQGLLYVDSV  142 (146)
T ss_dssp             GHHHHHHHC-----------------------CEESTTTTGGGTTC-------CCBCCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhcCCCCC-----------CcEEEEeCccHHHHHHHHHHHcCCceEeccHHHHHHHHHHHHHhh
Confidence            99999999999876542           468999999999999999999999999999999999999999864
>d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1q18a1 c.55.1.7 (A:2-111) Glucokinase Glk {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xc3a1 c.55.1.10 (A:1-118) Putative fructokinase YhdR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]} Back     information, alignment and structure
>d2ap1a2 c.55.1.10 (A:1-117) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2aa4a1 c.55.1.10 (A:1-119) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2gupa1 c.55.1.10 (A:1-114) Hypothetical protein SP2142 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1sz2a1 c.55.1.7 (A:3-321) Glucokinase Glk {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]} Back     information, alignment and structure
>d1woqa1 c.55.1.10 (A:11-139) Inorganic polyphosphate/ATP-glucomannokinase PPGMK {Arthrobacter sp. KM [TaxId: 184230]} Back     information, alignment and structure
>d2f9wa2 c.55.1.13 (A:1-114) Type III pantothenate kinase, CoaX {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d3bexa1 c.55.1.13 (A:1-118) Type III pantothenate kinase, CoaX {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1z05a3 c.55.1.10 (A:81-208) Transcriptional regulator VC2007 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Back     information, alignment and structure