Citrus Sinensis ID: 030327

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
MALLHSSMTATPRAFTCKSVSVGKVASFPPPLVNFASPSSYSPCSLTGVTNNLRLLGVKSNKATTFRCLAAALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKALCT
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccHHHHHHHHHccHHHHHHHHHHHHcccEEEEEcccccccccccHHHHHHHHHHccccccEEEcccccHHHHHcccccccccccccEEccEEcHHHHHHHHHHHcccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHccHHHHHHHHHccccccccccHHHHHccccccHHHccccccccccccccccccccccEcccccccHHHHHHHHHHHHcccEEEEEcccccccccccHHHHHHHHHHcccccEEEEEcccHHHHHcHHHHcccccccEEEEEcEEEcHHHHHHHHHHccHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mallhssmtatpraftcksvsvgkvasfppplvnfaspssyspcsltgvtnnlrllgvksnkattFRCLAAALTPELKSTLDKVVTGNKVVLFMkgtkdfpqcgfsHTVVQILKslnapfetVNILENEMLRQGlkeysswptfpqlyiegeffggcditveaYKNGELQELLEKALCT
Flexible Loop (DISEMBL)
mallhssmtatprafTCKSVSVGKVASFPPPLVNFASPSSYSPCSLTGVTNNLRLLGVKSNKATTFRCLAAAltpelkstldkVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKALCT
Low Complexity Region (SEG)
MALLHSSMTATPRAFTCKSVSVGKVASFPPPLVNFASPSSYSPCSLTGVTNNLRLLGVKSNKATTFRCLAAALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKALCT
Disordered region (IsUnstruct)
**************FTCKSVSVGKVASFPPPLVNFASPSSYSPCSLTGVTNNLRLLGVKSNKATTFRCLAAALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELL******
Disordered Region (DISOPRED)
*******************************************************************************TLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKALC*
Disordered Region (DISEMBL)
********TATPRAFTCKSVSVGKVASFPPPLVNFASPSSYSPCSLTGVTNNLRLLGVKSNKATTFRCLAAALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKALCT
Disordered Region (DISPRO)
*****************************P*****************************************ALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKALC*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALLHSSMTATPRAFTCKSVSVGKVASFPPPLVNFASPSSYSPCSLTGVTNNLRLLGVKSNKATTFRCLAAALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKALCT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	179	2.2.26 [Sep-21-2011]
Q84Y95	173	Monothiol glutaredoxin-S1	yes	no	0.731	0.757	0.723	4e-51
Q851Y7	168	Monothiol glutaredoxin-S7	yes	no	0.759	0.809	0.647	3e-49
P73056	107	Uncharacterized monothiol	N/A	no	0.597	1.0	0.598	1e-35
P51384	107	Uncharacterized monothiol	N/A	no	0.575	0.962	0.533	5e-28
Q1XDA3	107	Uncharacterized monothiol	N/A	no	0.597	1.0	0.514	1e-27
Q68W05	111	Probable monothiol glutar	yes	no	0.502	0.810	0.588	2e-26
O05957	107	Probable monothiol glutar	yes	no	0.519	0.869	0.559	1e-25
Q8H7F6	293	Monothiol glutaredoxin-S1	no	no	0.564	0.344	0.5	2e-25
Q92GH5	107	Probable monothiol glutar	yes	no	0.525	0.878	0.542	1e-24
Q86SX6	157	Glutaredoxin-related prot	yes	no	0.541	0.617	0.510	1e-24

>sp|Q84Y95|GRS14_ARATH Monothiol glutaredoxin-S14, chloroplastic OS=Arabidopsis thaliana GN=GRXS14 PE=1 SV=2

 Score =  200 bits (508), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 97/134 (72%), Positives = 112/134 (83%), Gaps = 3/134 (2%)

Query: 49  VTNNLRLLGVKSN---KATTFRCLAAALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGF 105
           V +N +L    SN   K T FRC A+ALTP+LK TL+K+V   KVVLFMKGT+DFP CGF
Sbjct: 40  VVHNHQLSFYGSNLKLKPTKFRCSASALTPQLKDTLEKLVNSEKVVLFMKGTRDFPMCGF 99

Query: 106 SHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK 165
           S+TVVQILK+LN PFE VNILENEMLRQGLKEYS+WPTFPQLYI GEFFGGCDIT+EA+K
Sbjct: 100 SNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPTFPQLYIGGEFFGGCDITLEAFK 159

Query: 166 NGELQELLEKALCT 179
            GELQE +EKA+C+
Sbjct: 160 TGELQEEVEKAMCS 173

May only reduce GSH-thiol disulfides, but not protein disulfides (Potential). May protect cells against protein oxidative damage. May regulate CAX cation transporters.
Arabidopsis thaliana (taxid: 3702)

>sp|Q851Y7|GRXS7_ORYSJ Monothiol glutaredoxin-S7, chloroplastic OS=Oryza sativa subsp. japonica GN=GRXS7 PE=2 SV=1

 Score =  194 bits (493), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 99/153 (64%), Positives = 118/153 (77%), Gaps = 17/153 (11%)

Query: 31  PLVNFASPSSYSPCSLTGVTNNLRLLGVKSNKATTFRCLAAALT----PELKSTLDKVVT 86
           PL+  ASP ++              L V S +A + RCLAAA      PE+++TLDKVV 
Sbjct: 29  PLLPRASPPTWR-------------LSVGSARARSTRCLAAAGGGGLAPEMRATLDKVVG 75

Query: 87  GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQ 146
            +KVVLFMKGTKDFPQCGFSHTVVQIL+SL+ PFET+++L NE LRQGLKEYSSWPTFPQ
Sbjct: 76  SHKVVLFMKGTKDFPQCGFSHTVVQILRSLDVPFETLDVLANEALRQGLKEYSSWPTFPQ 135

Query: 147 LYIEGEFFGGCDITVEAYKNGELQELLEKALCT 179
           LYI+GEFFGGCDITV+AYK+GELQE LEKA+ +
Sbjct: 136 LYIDGEFFGGCDITVDAYKSGELQETLEKAMLS 168

May only reduce GSH-thiol disulfides, but not protein disulfides.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P73056|YC64L_SYNY3 Uncharacterized monothiol glutaredoxin ycf64-like OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1846 PE=3 SV=1

 Score =  148 bits (374), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 64/107 (59%), Positives = 85/107 (79%)

Query: 73  LTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLR 132
           + PE K+ +D++VT NKV++FMKGTK  PQCGFS+ VVQIL  L  PFET+++L +  +R
Sbjct: 1   MNPETKARIDQLVTANKVMVFMKGTKLMPQCGFSNNVVQILNMLGIPFETLDVLADAEIR 60

Query: 133 QGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKALCT 179
           QG+KEYS+WPT PQ+Y+ GEF GG DI +E Y+NGELQE+LE AL +
Sbjct: 61  QGIKEYSNWPTIPQVYVNGEFVGGSDIMIELYQNGELQEMLEVALAS 107

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|P51384|YCF64_PORPU Uncharacterized monothiol glutaredoxin ycf64 OS=Porphyra purpurea GN=ycf64 PE=3 SV=1

 Score =  123 bits (309), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 55/103 (53%), Positives = 74/103 (71%)

Query: 76  ELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGL 135
           E K  +++++  NK+VLFMKG+K  P CGFS+T +QIL +LN  + T +ILENE +RQ +
Sbjct: 4   ETKKVIEQILDNNKIVLFMKGSKLMPMCGFSNTAIQILNTLNTDYFTYDILENENIRQAI 63

Query: 136 KEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKALC 178
           KE+SSWPT PQLYI  EF GG DI +E ++ GELQ  +E  L 
Sbjct: 64  KEHSSWPTIPQLYINREFVGGADIMLELFEQGELQAQVETLLA 106

Porphyra purpurea (taxid: 2787)

>sp|Q1XDA3|YCF64_PORYE Uncharacterized monothiol glutaredoxin ycf64 OS=Porphyra yezoensis GN=ycf64 PE=3 SV=1

 Score =  122 bits (306), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 55/107 (51%), Positives = 74/107 (69%)

Query: 73  LTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLR 132
           +  E K  +D+++  +K+VLFMKG K  P CGFS+T  QIL +LN  + T +ILE+E +R
Sbjct: 1   MDTETKKRIDQLLNDHKIVLFMKGNKTMPMCGFSNTATQILNTLNIKYFTYDILEDENIR 60

Query: 133 QGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKALCT 179
           + +KEYSSWPT PQLYI  EF GG DI +E ++ GELQ  +E  L T
Sbjct: 61  KAIKEYSSWPTIPQLYINREFIGGADIMLELFETGELQAQVEALLAT 107

Porphyra yezoensis (taxid: 2788)

>sp|Q68W05|GLRX2_RICTY Probable monothiol glutaredoxin-2 OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) GN=grxC2 PE=3 SV=1

 Score =  118 bits (295), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 53/90 (58%), Positives = 66/90 (73%)

Query: 85  VTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTF 144
           +  NKVVLFMKGTK+ P CGFS TVV IL  L   F  +N+L +  LR+ LK++S WPTF
Sbjct: 14  IKKNKVVLFMKGTKEMPACGFSGTVVAILNKLGVEFSDINVLFDTSLREDLKKFSDWPTF 73

Query: 145 PQLYIEGEFFGGCDITVEAYKNGELQELLE 174
           PQLYI GE  GGCDI  E Y+NGEL+++L+
Sbjct: 74  PQLYINGELVGGCDIVKELYQNGELEKMLK 103

Rickettsia typhi (strain ATCC VR-144 / Wilmington) (taxid: 257363)

>sp|O05957|GLRX2_RICPR Probable monothiol glutaredoxin-2 OS=Rickettsia prowazekii (strain Madrid E) GN=grxC2 PE=3 SV=2

 Score =  115 bits (289), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 52/93 (55%), Positives = 66/93 (70%)

Query: 85  VTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTF 144
           +  NKVVLFMKGTK+ P CGFS TVV IL  L   F  +N+L +  LR+ LK++S WPTF
Sbjct: 14  IKKNKVVLFMKGTKEMPACGFSGTVVAILNKLGVEFSDINVLFDTALREDLKKFSDWPTF 73

Query: 145 PQLYIEGEFFGGCDITVEAYKNGELQELLEKAL 177
           PQLYI G   GGCDI  E Y+NGEL+++L+  +
Sbjct: 74  PQLYINGVLVGGCDIAKELYQNGELEKMLKDVV 106

Rickettsia prowazekii (strain Madrid E) (taxid: 272947)

>sp|Q8H7F6|GRS16_ARATH Monothiol glutaredoxin-S16, chloroplastic OS=Arabidopsis thaliana GN=GRXS16 PE=2 SV=2

 Score =  115 bits (288), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 52/104 (50%), Positives = 74/104 (71%), Gaps = 3/104 (2%)

Query: 73  LTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEM-- 130
           LT  L+  +D++V  +KVV F+KG++  PQCGFS  VV IL+S    +ETV++L++E   
Sbjct: 189 LTVPLEELIDRLVKESKVVAFIKGSRSAPQCGFSQRVVGILESQGVDYETVDVLDDEYNH 248

Query: 131 -LRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELL 173
            LR+ LK YS+WPTFPQ++++GE  GGCDI    Y+NGEL  +L
Sbjct: 249 GLRETLKNYSNWPTFPQIFVKGELVGGCDILTSMYENGELANIL 292

May only reduce GSH-thiol disulfides, but not protein disulfides.

Arabidopsis thaliana (taxid: 3702)

>sp|Q92GH5|GLRX2_RICCN Probable monothiol glutaredoxin-2 OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=grxC2 PE=3 SV=2

 Score =  112 bits (281), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/94 (54%), Positives = 66/94 (70%)

Query: 81  LDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSS 140
           ++  +  NKVVLFMKG K  P CGFS TVV IL  L   F  +N+L +  LR+ LK++S 
Sbjct: 10  IENEIKNNKVVLFMKGIKKSPACGFSGTVVAILNKLGVEFRDINVLFDAELREDLKKFSD 69

Query: 141 WPTFPQLYIEGEFFGGCDITVEAYKNGELQELLE 174
           WPTFPQLYI GE  GGCDI  E Y++GEL+++L+
Sbjct: 70  WPTFPQLYINGELVGGCDIARELYQSGELEKMLK 103

Rickettsia conorii (strain ATCC VR-613 / Malish 7) (taxid: 272944)

>sp|Q86SX6|GLRX5_HUMAN Glutaredoxin-related protein 5, mitochondrial OS=Homo sapiens GN=GLRX5 PE=1 SV=2

 Score =  112 bits (280), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 50/98 (51%), Positives = 72/98 (73%), Gaps = 1/98 (1%)

Query: 79  STLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNA-PFETVNILENEMLRQGLKE 137
             LD +V  +KVV+F+KGT + PQCGFS+ VVQIL+      +   N+L++  LRQG+K+
Sbjct: 43  EQLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKD 102

Query: 138 YSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEK 175
           YS+WPT PQ+Y+ GEF GGCDI ++ ++NG+L E L+K
Sbjct: 103 YSNWPTIPQVYLNGEFVGGCDILLQMHQNGDLVEELKK 140

Monothiol glutaredoxin involved in the biogenesis of iron-sulfur clusters. Required for normal iron homeostasis. Required for normal regulation of hemoglobin synthesis by the iron-sulfur protein ACO1.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
388518093	182	unknown [Lotus japonicus]	0.670	0.659	0.842	1e-54
357507677	181	Glutaredoxin-like protein [Medicago trun	0.670	0.662	0.819	7e-54
296082226	183	unnamed protein product [Vitis vinifera]	0.692	0.677	0.784	3e-53
225451695	175	PREDICTED: monothiol glutaredoxin-S14, c	0.692	0.708	0.784	5e-53
116779854	192	unknown [Picea sitchensis] gi|148909147|	0.837	0.781	0.638	2e-52
351723691	177	uncharacterized protein LOC100500060 [Gl	0.765	0.774	0.717	3e-52
449470257	178	PREDICTED: monothiol glutaredoxin-S14, c	0.877	0.882	0.636	4e-52
329025160	177	glutaredoxin [Solanum chacoense]	0.681	0.689	0.780	1e-51
351725557	177	uncharacterized protein LOC100305724 [Gl	0.709	0.717	0.75	2e-51
223948169	172	unknown [Zea mays] gi|414873963|tpg|DAA5	0.659	0.686	0.764	4e-51

>gi|388518093|gb|AFK47108.1| unknown [Lotus japonicus]

 Score =  217 bits (553), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 102/121 (84%), Positives = 114/121 (94%), Gaps = 1/121 (0%)

Query: 59  KSNKATTFRCLAAALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNA 118
           K +  TT RC ++ALTPELKSTLDKVVT NKVVLFMKGTKDFPQCGFS+TVVQILKSLN 
Sbjct: 63  KRSSTTTIRC-SSALTPELKSTLDKVVTSNKVVLFMKGTKDFPQCGFSNTVVQILKSLNV 121

Query: 119 PFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKALC 178
           PFET+NILEN++LRQGLKEY++WPTFPQLYI+GEFFGGCDITVEAYKNGELQELLEKA+C
Sbjct: 122 PFETLNILENDILRQGLKEYTNWPTFPQLYIDGEFFGGCDITVEAYKNGELQELLEKAMC 181

Query: 179 T 179
           +
Sbjct: 182 S 182

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357507677|ref|XP_003624127.1| Glutaredoxin-like protein [Medicago truncatula] gi|355499142|gb|AES80345.1| Glutaredoxin-like protein [Medicago truncatula] gi|388516461|gb|AFK46292.1| unknown [Medicago truncatula]

 Score =  215 bits (547), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 100/122 (81%), Positives = 114/122 (93%), Gaps = 2/122 (1%)

Query: 58  VKSNKATTFRCLAAALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLN 117
           +K   +TT RC  +ALTPELK+TLDKVVT NK+VLFMKGTKDFPQCGFS+TVVQIL+SLN
Sbjct: 62  LKQRFSTTIRC--SALTPELKTTLDKVVTSNKIVLFMKGTKDFPQCGFSNTVVQILRSLN 119

Query: 118 APFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKAL 177
           A FET+NIL+N+MLRQGLKEYSSWPTFPQLYI+GEFFGGCDITVEAYKNGELQEL+EKA+
Sbjct: 120 ASFETINILDNDMLRQGLKEYSSWPTFPQLYIDGEFFGGCDITVEAYKNGELQELVEKAM 179

Query: 178 CT 179
           C+
Sbjct: 180 CS 181

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082226|emb|CBI21231.3| unnamed protein product [Vitis vinifera]

 Score =  213 bits (541), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 98/125 (78%), Positives = 114/125 (91%), Gaps = 1/125 (0%)

Query: 55  LLGVKSNKATTFRCLAAALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILK 114
           ++G KS +  +FRC +A LTPELK+TLDKVVT NKVVLFMKGTK+FPQCGFS+TVVQIL 
Sbjct: 60  VIGAKSGRIGSFRCFSA-LTPELKTTLDKVVTSNKVVLFMKGTKEFPQCGFSNTVVQILN 118

Query: 115 SLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLE 174
           SLN PFET+NILENE+LRQGLKEYS+WPTFPQLYIEGEFFGGCDITV+AY +G+LQE LE
Sbjct: 119 SLNVPFETINILENEILRQGLKEYSNWPTFPQLYIEGEFFGGCDITVDAYNSGQLQEQLE 178

Query: 175 KALCT 179
           KA+C+
Sbjct: 179 KAMCS 183

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451695|ref|XP_002278830.1| PREDICTED: monothiol glutaredoxin-S14, chloroplastic-like [Vitis vinifera]

 Score =  212 bits (540), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 98/125 (78%), Positives = 114/125 (91%), Gaps = 1/125 (0%)

Query: 55  LLGVKSNKATTFRCLAAALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILK 114
           ++G KS +  +FRC +A LTPELK+TLDKVVT NKVVLFMKGTK+FPQCGFS+TVVQIL 
Sbjct: 52  VIGAKSGRIGSFRCFSA-LTPELKTTLDKVVTSNKVVLFMKGTKEFPQCGFSNTVVQILN 110

Query: 115 SLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLE 174
           SLN PFET+NILENE+LRQGLKEYS+WPTFPQLYIEGEFFGGCDITV+AY +G+LQE LE
Sbjct: 111 SLNVPFETINILENEILRQGLKEYSNWPTFPQLYIEGEFFGGCDITVDAYNSGQLQEQLE 170

Query: 175 KALCT 179
           KA+C+
Sbjct: 171 KAMCS 175

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116779854|gb|ABK21451.1| unknown [Picea sitchensis] gi|148909147|gb|ABR17674.1| unknown [Picea sitchensis]

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 104/163 (63%), Positives = 123/163 (75%), Gaps = 13/163 (7%)

Query: 30  PPLVNFASPSSYSPCSLTGVTNNLRLL-----GVKSNKATTFRCLAA--------ALTPE 76
           P L +F+  ++  P  L    N+ R       G K   +T  +C A+        ALTPE
Sbjct: 30  PLLGHFSFKAAVCPSGLFAKENSSRTARRHRAGFKRRSSTALQCTASHGPTGSTGALTPE 89

Query: 77  LKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLK 136
           LK+TLDK +T NKVVLFMKGTKDFPQCGFS+TVVQ+LKSLN PFET NILENE LRQGLK
Sbjct: 90  LKATLDKFITSNKVVLFMKGTKDFPQCGFSNTVVQVLKSLNVPFETFNILENETLRQGLK 149

Query: 137 EYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKALCT 179
           +YSSWPTFPQLYI+GEFFGGCDIT+EAYK+GELQELLE+A+C+
Sbjct: 150 QYSSWPTFPQLYIDGEFFGGCDITIEAYKSGELQELLERAICS 192

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723691|ref|NP_001236264.1| uncharacterized protein LOC100500060 [Glycine max] gi|255628903|gb|ACU14796.1| unknown [Glycine max]

 Score =  209 bits (533), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 99/138 (71%), Positives = 117/138 (84%), Gaps = 1/138 (0%)

Query: 40  SYSPCSLTGVTNNLRLLGVKSNKATTFRCLAAALTPELKSTLDKVVTGNKVVLFMKGTKD 99
           S  P S   +T+NL         +TT RC ++ALTP+LKSTLD+V+  NKVV+FMKGTKD
Sbjct: 39  SLRPSSPLVLTHNLHFQPKLKRASTTIRC-SSALTPQLKSTLDQVIASNKVVVFMKGTKD 97

Query: 100 FPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDI 159
           FPQCGFS+TVVQILKSLN PFET+N+LEN++LRQGLKEYSSWPTFPQ+YIEGEFFGGCDI
Sbjct: 98  FPQCGFSNTVVQILKSLNVPFETINVLENDLLRQGLKEYSSWPTFPQVYIEGEFFGGCDI 157

Query: 160 TVEAYKNGELQELLEKAL 177
           TV+AY+ GELQELLEKA+
Sbjct: 158 TVDAYQKGELQELLEKAM 175

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449470257|ref|XP_004152834.1| PREDICTED: monothiol glutaredoxin-S14, chloroplastic-like [Cucumis sativus] gi|449477685|ref|XP_004155093.1| PREDICTED: monothiol glutaredoxin-S14, chloroplastic-like [Cucumis sativus]

 Score =  209 bits (532), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 105/165 (63%), Positives = 125/165 (75%), Gaps = 8/165 (4%)

Query: 15  FTCKSVSVGKVASFPPPLVNFASPSSYSPCSLTGVTNNLRLLGVKSNKATTFRCLAAALT 74
           FT K++S+ +   FP       SP       L     +L  +        +FRCL+  L+
Sbjct: 22  FTNKALSL-RPLPFP------TSPLQRHAHHLNHSLQHLHPISKSGRNFRSFRCLSG-LS 73

Query: 75  PELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQG 134
           PELK+T+DKV+T  KVVLFMKG+KDFPQCGFSHTVVQILKSLN  FET+NILENE+LRQG
Sbjct: 74  PELKTTIDKVITSEKVVLFMKGSKDFPQCGFSHTVVQILKSLNVHFETINILENELLRQG 133

Query: 135 LKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKALCT 179
           LKEYSSWPTFPQLYI+GEFFGGCDITVEAYK+GELQE+LEKA+C+
Sbjct: 134 LKEYSSWPTFPQLYIDGEFFGGCDITVEAYKSGELQEVLEKAMCS 178

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|329025160|gb|AEB71563.1| glutaredoxin [Solanum chacoense]

 Score =  207 bits (528), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 96/123 (78%), Positives = 109/123 (88%), Gaps = 1/123 (0%)

Query: 57  GVKSNKATTFRCLAAALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL 116
           G +  +  + RCL+A L P LKSTLDKVVT  K+VLFMKGTK+FPQCGFS+TVVQILK+L
Sbjct: 56  GKRDGRLRSIRCLSA-LDPNLKSTLDKVVTSQKIVLFMKGTKEFPQCGFSNTVVQILKAL 114

Query: 117 NAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKA 176
           NAPFET+NILENE LRQGLKEYSSWPTFPQLYI+GEFFGGCDI VEAYK+GELQELLE+ 
Sbjct: 115 NAPFETLNILENEALRQGLKEYSSWPTFPQLYIDGEFFGGCDIVVEAYKSGELQELLERT 174

Query: 177 LCT 179
           LC+
Sbjct: 175 LCS 177

Source: Solanum chacoense

Species: Solanum chacoense

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725557|ref|NP_001235817.1| uncharacterized protein LOC100305724 [Glycine max] gi|255626427|gb|ACU13558.1| unknown [Glycine max]

 Score =  206 bits (525), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 96/128 (75%), Positives = 113/128 (88%), Gaps = 1/128 (0%)

Query: 50  TNNLRLLGVKSNKATTFRCLAAALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTV 109
           T+NL         +TT RC ++ALTP+LKSTLD+V+  NKVV+FMKGTKDFPQCGFS+TV
Sbjct: 49  THNLHFQPKLKRASTTVRC-SSALTPQLKSTLDQVIASNKVVVFMKGTKDFPQCGFSNTV 107

Query: 110 VQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGEL 169
           VQILKSLN PFET+N+LEN++LRQGLKEYSSWPTFPQ+YIEGEFFGGCDITV+AY+ GEL
Sbjct: 108 VQILKSLNVPFETINVLENDLLRQGLKEYSSWPTFPQVYIEGEFFGGCDITVDAYQKGEL 167

Query: 170 QELLEKAL 177
           QELLEKA+
Sbjct: 168 QELLEKAM 175

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|223948169|gb|ACN28168.1| unknown [Zea mays] gi|414873963|tpg|DAA52520.1| TPA: grx_S14-glutaredoxin subgroup II [Zea mays]

 Score =  206 bits (523), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 91/119 (76%), Positives = 109/119 (91%), Gaps = 1/119 (0%)

Query: 61  NKATTFRCLAAALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPF 120
            ++ + RCLAA ++PE+++TLDKVV  +KVVLFMKGTKDFPQCGFSHTVVQIL+SL+ PF
Sbjct: 55  ERSRSVRCLAA-MSPEMRATLDKVVGSSKVVLFMKGTKDFPQCGFSHTVVQILRSLDVPF 113

Query: 121 ETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKALCT 179
           ET+++L NE LRQGLKEYSSWPTFPQLYI+GEFFGGCDITVEAYK+GELQE LEKA+C+
Sbjct: 114 ETLDVLANEALRQGLKEYSSWPTFPQLYIDGEFFGGCDITVEAYKSGELQETLEKAMCS 172

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
TAIR|locus:2082647	173	CXIP1 "CAX interacting protein	0.910	0.942	0.622	1.4e-48
CGD|CAL0004286	175	orf19.2782 [Candida albicans (	0.581	0.594	0.579	1.2e-28
UNIPROTKB|Q2GHG0	110	ECH_0302 "Glutaredoxin" [Ehrli	0.575	0.936	0.543	1.2e-28
TIGR_CMR|ECH_0302	110	ECH_0302 "glutaredoxin-related	0.575	0.936	0.543	1.2e-28
UNIPROTKB|Q83DV9	99	CBU_0583 "Glutaredoxin" [Coxie	0.519	0.939	0.623	5e-28
TIGR_CMR|CBU_0583	99	CBU_0583 "glutaredoxin-related	0.519	0.939	0.623	5e-28
UNIPROTKB|Q0C0U3	111	HNE_1949 "Glutaredoxin" [Hypho	0.519	0.837	0.569	2.8e-27
FB|FBgn0030584	159	CG14407 [Drosophila melanogast	0.687	0.773	0.460	4e-26
ASPGD|ASPL0000077537	149	AN4304 [Emericella nidulans (t	0.592	0.711	0.532	2.2e-25
UNIPROTKB|Q2GEJ8	106	NSE_0203 "Glutaredoxin" [Neori	0.569	0.962	0.509	2.2e-25

TAIR|locus:2082647 CXIP1 "CAX interacting protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 107/172 (62%), Positives = 125/172 (72%)

Query:    11 TPRAFTCKSVSVGKVASFPPPLVNFASPSSYSPCSLTGVTNNLRLLGVKSN---KATTFR 67
             TP   T  +V    V +  P  + F    S  P S   V +N +L    SN   K T FR
Sbjct:     8 TPTLITSVAVVSSSVTN-KPHSIRF----SLKPTSAL-VVHNHQLSFYGSNLKLKPTKFR 61

Query:    68 CLAAALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE 127
             C A+ALTP+LK TL+K+V   KVVLFMKGT+DFP CGFS+TVVQILK+LN PFE VNILE
Sbjct:    62 CSASALTPQLKDTLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILE 121

Query:   128 NEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKALCT 179
             NEMLRQGLKEYS+WPTFPQLYI GEFFGGCDIT+EA+K GELQE +EKA+C+
Sbjct:   122 NEMLRQGLKEYSNWPTFPQLYIGGEFFGGCDITLEAFKTGELQEEVEKAMCS 173

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0006812 "cation transport" evidence=IDA

GO:0015297 "antiporter activity" evidence=IDA

GO:0015038 "glutathione disulfide oxidoreductase activity" evidence=IGI

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0048653 "anther development" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

CGD|CAL0004286 orf19.2782 [Candida albicans (taxid:5476)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 62/107 (57%), Positives = 75/107 (70%)

Query:    73 LTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNA-P--FETVNILENE 129
             ++ ELK  LDK VT + VVLFMKGT +FPQCGFS   +QIL      P  F   N+LE+ 
Sbjct:    39 ISTELKDALDKAVTTSPVVLFMKGTPEFPQCGFSRATIQILGQQGVDPEKFAAYNVLEDS 98

Query:   130 MLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKA 176
              LR+G+KEYSSWPT PQLY+ GEF GGCDI     +NGEL ELLE++
Sbjct:    99 ELREGIKEYSSWPTIPQLYVNGEFIGGCDIITSMAQNGELAELLEES 145

GO:0034599 "cellular response to oxidative stress" evidence=IEA

GO:0006970 "response to osmotic stress" evidence=IEA

GO:0015036 "disulfide oxidoreductase activity" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

UNIPROTKB|Q2GHG0 ECH_0302 "Glutaredoxin" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 56/103 (54%), Positives = 75/103 (72%)

Query:    73 LTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLR 132
             +T ++   +   +  N VVL+MKG  DFPQCGFS  VV ILK +N  F+++N+LE+  LR
Sbjct:     1 MTNDIMDKIKHDIENNDVVLYMKGDADFPQCGFSSVVVSILKKMNVKFKSINVLESLELR 60

Query:   133 QGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEK 175
             + +KE+++WPT PQLY++GEF GGCDI  E Y NGELQELL K
Sbjct:    61 EAIKEFTNWPTIPQLYVKGEFIGGCDIVKEMYHNGELQELLSK 103

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|ECH_0302 ECH_0302 "glutaredoxin-related protein" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 56/103 (54%), Positives = 75/103 (72%)

Query:    73 LTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLR 132
             +T ++   +   +  N VVL+MKG  DFPQCGFS  VV ILK +N  F+++N+LE+  LR
Sbjct:     1 MTNDIMDKIKHDIENNDVVLYMKGDADFPQCGFSSVVVSILKKMNVKFKSINVLESLELR 60

Query:   133 QGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEK 175
             + +KE+++WPT PQLY++GEF GGCDI  E Y NGELQELL K
Sbjct:    61 EAIKEFTNWPTIPQLYVKGEFIGGCDIVKEMYHNGELQELLSK 103

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q83DV9 CBU_0583 "Glutaredoxin" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 58/93 (62%), Positives = 71/93 (76%)

Query:    81 LDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSS 140
             + + VT N VVL+MKGT DFPQCGFS  VVQIL+     F + N+LE+  LRQG+KE+SS
Sbjct:     7 IQQQVTSNPVVLYMKGTPDFPQCGFSGRVVQILRQCKIDFTSFNVLESPELRQGIKEFSS 66

Query:   141 WPTFPQLYIEGEFFGGCDITVEAYKNGELQELL 173
             WPT PQLYI+GEF GGCDI  E ++ G+LQELL
Sbjct:    67 WPTIPQLYIKGEFIGGCDIVGELFETGKLQELL 99

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CBU_0583 CBU_0583 "glutaredoxin-related protein" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 58/93 (62%), Positives = 71/93 (76%)

Query:    81 LDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSS 140
             + + VT N VVL+MKGT DFPQCGFS  VVQIL+     F + N+LE+  LRQG+KE+SS
Sbjct:     7 IQQQVTSNPVVLYMKGTPDFPQCGFSGRVVQILRQCKIDFTSFNVLESPELRQGIKEFSS 66

Query:   141 WPTFPQLYIEGEFFGGCDITVEAYKNGELQELL 173
             WPT PQLYI+GEF GGCDI  E ++ G+LQELL
Sbjct:    67 WPTIPQLYIKGEFIGGCDIVGELFETGKLQELL 99

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q0C0U3 HNE_1949 "Glutaredoxin" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 53/93 (56%), Positives = 72/93 (77%)

Query:    81 LDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSS 140
             ++K V  N VVLFMKGT  FPQCGFS TVVQIL  L   +   N+LE++ +R+G+K+Y++
Sbjct:    10 IEKAVKSNDVVLFMKGTPTFPQCGFSSTVVQILDYLGVEYVATNVLEDQNVREGIKQYAN 69

Query:   141 WPTFPQLYIEGEFFGGCDITVEAYKNGELQELL 173
             WPT PQLY++GEF GGCDI  E ++NGEL++L+
Sbjct:    70 WPTIPQLYVKGEFVGGCDILKEMFENGELRDLM 102

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

FB|FBgn0030584 CG14407 [Drosophila melanogaster (taxid:7227)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 58/126 (46%), Positives = 88/126 (69%)

Query:    54 RLLGVKSNKATTFRCLAA-ALTPEL--KSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVV 110
             ++L   + ++   R LAA A T     K+T+DK+V  NKVV+FMKG    P+CGFS+ VV
Sbjct:    14 QILATTAPQSLLTRFLAADAATGAAVDKATMDKLVRTNKVVVFMKGNPQAPRCGFSNAVV 73

Query:   111 QILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQ 170
             QI++     ++  ++L+NE LRQG+K+Y+ WPT PQ++I GEF GGCDI ++ +++G+L 
Sbjct:    74 QIMRMHGVQYDAHDVLQNESLRQGVKDYTDWPTIPQVFINGEFVGGCDILLQMHQSGDLI 133

Query:   171 ELLEKA 176
             E L+KA
Sbjct:   134 EELKKA 139

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

ASPGD|ASPL0000077537 AN4304 [Emericella nidulans (taxid:162425)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 58/109 (53%), Positives = 72/109 (66%)

Query:    70 AAALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNA-P--FETVNIL 126
             A  L+ E K+ +DK V    VVLFMKGT + PQCGFS   +QIL      P  F   N+L
Sbjct:    34 ARLLSTETKAAIDKAVASAPVVLFMKGTPETPQCGFSRASIQILGLQGVDPKKFVAFNVL 93

Query:   127 ENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEK 175
             E+  LRQG+KEYS WPT PQLY+  EF GGCDI +  ++NGEL +LLE+
Sbjct:    94 EDPELRQGIKEYSDWPTIPQLYLNKEFIGGCDILMSMHQNGELSKLLEE 142

GO:0009055 "electron carrier activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0034599 "cellular response to oxidative stress" evidence=IEA

GO:0006970 "response to osmotic stress" evidence=IEA

GO:0015036 "disulfide oxidoreductase activity" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

UNIPROTKB|Q2GEJ8 NSE_0203 "Glutaredoxin" [Neorickettsia sennetsu str. Miyayama (taxid:222891)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 52/102 (50%), Positives = 73/102 (71%)

Query:    76 ELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGL 135
             ++ + ++ ++  + VVLFMKGT   P CGFS  VV ILK+L+  F  VN+LE+  LR+G+
Sbjct:     3 DIFAKIEGIIRRHDVVLFMKGTSGLPMCGFSGAVVNILKALDVTFYGVNVLEDPELREGI 62

Query:   136 KEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKAL 177
             K+++ WPT PQLY++GEF GGCDI  E Y+N ELQ L E +L
Sbjct:    63 KKFADWPTIPQLYVKGEFIGGCDIVREMYENRELQTLFEDSL 104

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q851Y7	GRXS7_ORYSJ	No assigned EC number	0.6470	0.7597	0.8095	yes	no
Q84Y95	GRS14_ARATH	No assigned EC number	0.7238	0.7318	0.7572	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	179
TIGR00365	97	TIGR00365, TIGR00365, monothiol glutaredoxin, Grx4	2e-58
cd03028	90	cd03028, GRX_PICOT_like, Glutaredoxin (GRX) family	3e-56
COG0278	105	COG0278, COG0278, Glutaredoxin-related protein [Po	8e-53
PTZ00062	204	PTZ00062, PTZ00062, glutaredoxin; Provisional	1e-32
PRK10824	115	PRK10824, PRK10824, glutaredoxin-4; Provisional	1e-31
cd02066	72	cd02066, GRX_family, Glutaredoxin (GRX) family; co	9e-31
pfam00462	60	pfam00462, Glutaredoxin, Glutaredoxin	5e-23
cd03419	82	cd03419, GRX_GRXh_1_2_like, Glutaredoxin (GRX) fam	4e-14
TIGR02180	84	TIGR02180, GRX_euk, Glutaredoxin	2e-11
TIGR02181	79	TIGR02181, GRX_bact, Glutaredoxin, GrxC family	2e-06
COG0695	80	COG0695, GrxC, Glutaredoxin and related proteins [	3e-06
pfam04908	92	pfam04908, SH3BGR, SH3-binding, glutamic acid-rich	8e-06
PRK10638	83	PRK10638, PRK10638, glutaredoxin 3; Provisional	9e-06
cd03030	92	cd03030, GRX_SH3BGR, Glutaredoxin (GRX) family, SH	7e-05
cd03418	75	cd03418, GRX_GRXb_1_3_like, Glutaredoxin (GRX) fam	8e-04
cd03031	147	cd03031, GRX_GRX_like, Glutaredoxin (GRX) family,	0.001

>gnl|CDD|188046 TIGR00365, TIGR00365, monothiol glutaredoxin, Grx4 family

 Score =  177 bits (452), Expect = 2e-58
 Identities = 55/96 (57%), Positives = 70/96 (72%)

Query: 78  KSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKE 137
              + + +  N VVL+MKGT  FPQCGFS   VQIL +   PF  VN+LE+  +RQG+KE
Sbjct: 2   IERIKEQIAENPVVLYMKGTPQFPQCGFSARAVQILNACGVPFAYVNVLEDPEIRQGIKE 61

Query: 138 YSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELL 173
           YS+WPT PQLY++GEF GGCDI +E Y++GELQ LL
Sbjct: 62  YSNWPTIPQLYVKGEFVGGCDIIMEMYQSGELQTLL 97

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation [Energy metabolism, Electron transport]. Length = 97

>gnl|CDD|239326 cd03028, GRX_PICOT_like, Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

 Score =  171 bits (436), Expect = 3e-56
 Identities = 55/90 (61%), Positives = 68/90 (75%)

Query: 81  LDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSS 140
           + K++  N VVLFMKGT + P+CGFS  VVQIL  L   F T +ILE+E +RQGLKEYS+
Sbjct: 1   IKKLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSN 60

Query: 141 WPTFPQLYIEGEFFGGCDITVEAYKNGELQ 170
           WPTFPQLY+ GE  GGCDI  E +++GELQ
Sbjct: 61  WPTFPQLYVNGELVGGCDIVKEMHESGELQ 90

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein in Arabidopsis thaliana, and PfGLP-1, a GRX-like protein from Plasmodium falciparum. Length = 90

>gnl|CDD|223355 COG0278, COG0278, Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

 Score =  163 bits (415), Expect = 8e-53
 Identities = 58/104 (55%), Positives = 74/104 (71%), Gaps = 1/104 (0%)

Query: 74  TPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNA-PFETVNILENEMLR 132
             E+   + K +  N VVLFMKGT +FPQCGFS   VQIL +     F  V++L++  +R
Sbjct: 1   MMEILDRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIR 60

Query: 133 QGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKA 176
           QGLKEYS+WPTFPQLY+ GEF GGCDI  E Y++GELQ LL++A
Sbjct: 61  QGLKEYSNWPTFPQLYVNGEFVGGCDIVREMYQSGELQTLLKEA 104

Length = 105

>gnl|CDD|240250 PTZ00062, PTZ00062, glutaredoxin; Provisional

 Score =  114 bits (288), Expect = 1e-32
 Identities = 45/96 (46%), Positives = 65/96 (67%), Gaps = 3/96 (3%)

Query: 79  STLDKV---VTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGL 135
            T++K+   +  +K++LFMKG+K FP C FS+ VV +L S    +ET NI E+  LR+ L
Sbjct: 101 DTVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREEL 160

Query: 136 KEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQE 171
           K YS+WPT+PQLY+ GE  GG DI  E Y++  L++
Sbjct: 161 KVYSNWPTYPQLYVNGELIGGHDIIKELYESNSLRK 196

Length = 204

>gnl|CDD|182759 PRK10824, PRK10824, glutaredoxin-4; Provisional

 Score =  109 bits (275), Expect = 1e-31
 Identities = 44/101 (43%), Positives = 69/101 (68%), Gaps = 3/101 (2%)

Query: 79  STLDKV---VTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGL 135
           +T++K+   +  N ++L+MKG+   P CGFS   VQ L +    F  V+IL+N  +R  L
Sbjct: 3   TTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAEL 62

Query: 136 KEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKA 176
            +Y++WPTFPQL+++GE  GGCDI +E Y+ GELQ+L+++ 
Sbjct: 63  PKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKET 103

Length = 115

>gnl|CDD|239017 cd02066, GRX_family, Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

 Score =  106 bits (267), Expect = 9e-31
 Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 5/77 (6%)

Query: 89  KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLY 148
           KVV+F K T     C +     ++L+SL   FE ++ILE+  LR+ LKE S WPT PQ++
Sbjct: 1   KVVVFSKST-----CPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIF 55

Query: 149 IEGEFFGGCDITVEAYK 165
           I GEF GG D     ++
Sbjct: 56  INGEFIGGYDDLKALHE 72

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH -> GSH reductase -> GSH -> GRX -> protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which are members of this family. E. coli GRX2, however, is a 24-kDa protein that belongs to the GSH S-transferase (GST) family. Length = 72

>gnl|CDD|215931 pfam00462, Glutaredoxin, Glutaredoxin

 Score = 86.0 bits (214), Expect = 5e-23
 Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 5/65 (7%)

Query: 90  VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYI 149
           VVLF K     P C F     ++L SL   FE +++ E+  +R+ LKE S WPT PQ++I
Sbjct: 1   VVLFTK-----PTCPFCKRAKRLLDSLGVKFEEIDVDEDPEIREELKELSGWPTVPQVFI 55

Query: 150 EGEFF 154
           +GE  
Sbjct: 56  DGEHI 60

Length = 60

>gnl|CDD|239511 cd03419, GRX_GRXh_1_2_like, Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

 Score = 63.7 bits (156), Expect = 4e-14
 Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 8/87 (9%)

Query: 89  KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEM---LRQGLKEYSSWPTFP 145
            VV+F K       C +      +LK L      V + ++E    ++  L+E +   T P
Sbjct: 1   PVVVFSKSY-----CPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVP 55

Query: 146 QLYIEGEFFGGCDITVEAYKNGELQEL 172
            ++I G+F GGCD  +  +K+G+L +L
Sbjct: 56  NVFIGGKFIGGCDDLMALHKSGKLVKL 82

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH -> GSH reductase -> GSH -> GRX -> protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, which are members of this subfamily. Also included in this subfamily are the N-terminal GRX domains of proteins similar to human thioredoxin reductase 1 and 3. Length = 82

>gnl|CDD|233765 TIGR02180, GRX_euk, Glutaredoxin

 Score = 56.9 bits (138), Expect = 2e-11
 Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 10/89 (11%)

Query: 90  VVLFMKGTKDFPQCGFSHTVVQILKSLNA--PFETVNILENEM---LRQGLKEYSSWPTF 144
           VV+F K       C +     +IL  LN    +E V + +      ++  L+E +   T 
Sbjct: 1   VVVFSKSY-----CPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTV 55

Query: 145 PQLYIEGEFFGGCDITVEAYKNGELQELL 173
           P ++I G+F GGC   +  YK+G+L ELL
Sbjct: 56  PNIFINGKFIGGCSDLLALYKSGKLAELL 84

Glutaredoxins are thioltransferases (disulfide reductases) which utilize glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system. Glutaredoxins utilize the CXXC motif common to thioredoxins and are involved in multiple cellular processes including protection from redox stress, reduction of critical enzymes such as ribonucleotide reductase and the generation of reduced sulfur for iron sulfur cluster formation. Glutaredoxins are capable of reduction of mixed disulfides of glutathione as well as the formation of glutathione mixed disulfides. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses. Length = 84

>gnl|CDD|233766 TIGR02181, GRX_bact, Glutaredoxin, GrxC family

 Score = 43.4 bits (103), Expect = 2e-06
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 2/77 (2%)

Query: 97  TKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGG 156
           TK +  C +      +L S    F  + +  +  LR  + + S   T PQ++I     GG
Sbjct: 5   TKPY--CPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIGDVHVGG 62

Query: 157 CDITVEAYKNGELQELL 173
           CD      + G+L  LL
Sbjct: 63  CDDLYALDREGKLDPLL 79

Glutaredoxins are thioltransferases (disulfide reductases) which utilize glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system. Glutaredoxins utilize the CXXC motif common to thioredoxins and are involved in multiple cellular processes including protection from redox stress, reduction of critical enzymes such as ribonucleotide reductase and the generation of reduced sulfur for iron sulfur cluster formation. Glutaredoxins are capable of reduction of mixed disulfides of glutathione as well as the formation of glutathione mixed disulfides. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides [Energy metabolism, Electron transport]. Length = 79

>gnl|CDD|223767 COG0695, GrxC, Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

 Score = 43.1 bits (102), Expect = 3e-06
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 7/72 (9%)

Query: 89  KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEM--LRQGLKEYSSWPTFPQ 146
            V ++   TK    C +     ++L      +E +++ ++E    R+ +K      T PQ
Sbjct: 2   NVTIY---TKPG--CPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQ 56

Query: 147 LYIEGEFFGGCD 158
           ++I G+  GGCD
Sbjct: 57  IFIGGKHVGGCD 68

Length = 80

>gnl|CDD|218321 pfam04908, SH3BGR, SH3-binding, glutamic acid-rich protein

 Score = 42.1 bits (99), Expect = 8e-06
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (2%)

Query: 109 VVQILKSLNAPFETVNILENEMLRQGLKEYSS--WPTFPQLYIEGEFFGGCDITVEAYKN 166
           V+ IL +   PF+ V+I ++E  R+ ++E      P  PQ++ E ++ G  D   EA + 
Sbjct: 23  VLMILDANKIPFDEVDITKDEEQRRWMRENPPNGAPLPPQIFNEDQYCGDYDAFFEAVEA 82

Query: 167 GELQELL 173
             L E L
Sbjct: 83  NTLYEFL 89

Length = 92

>gnl|CDD|182607 PRK10638, PRK10638, glutaredoxin 3; Provisional

 Score = 41.7 bits (98), Expect = 9e-06
 Identities = 21/72 (29%), Positives = 33/72 (45%)

Query: 103 CGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVE 162
           C F H    +L S    F+ + I  +   R+ + + S   T PQ++I+ +  GGCD    
Sbjct: 12  CPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYA 71

Query: 163 AYKNGELQELLE 174
               G L  LL+
Sbjct: 72  LDARGGLDPLLK 83

Length = 83

>gnl|CDD|239328 cd03030, GRX_SH3BGR, Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif

 Score = 39.6 bits (93), Expect = 7e-05
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)

Query: 109 VVQILKSLNAPFETVNILENEMLRQ----GLKEYSSWPTFPQLYIEGEFFGGCDITVEAY 164
           V+  L++    FE V+I  NE  RQ     +   +  P  PQ++   E+ G  +   EA 
Sbjct: 22  VLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFEAK 81

Query: 165 KNGELQELL 173
           +N  L+E L
Sbjct: 82  ENNTLEEFL 90

The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways. Length = 92

>gnl|CDD|239510 cd03418, GRX_GRXb_1_3_like, Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

 Score = 36.4 bits (85), Expect = 8e-04
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 6/71 (8%)

Query: 89  KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYS-SWPTFPQL 147
           KV ++   TK    C +      +L      +E +++  +  LR+ +   S    T PQ+
Sbjct: 1   KVEIY---TKPN--CPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQI 55

Query: 148 YIEGEFFGGCD 158
           +I     GGCD
Sbjct: 56  FIGDVHIGGCD 66

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH -> GSH reductase -> GSH -> GRX -> protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including E. coli GRX1 and GRX3, which are members of this subfamily. Length = 75

>gnl|CDD|239329 cd03031, GRX_GRX_like, Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

 Score = 36.8 bits (86), Expect = 0.001
 Identities = 17/72 (23%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 109 VVQILKSLNAPFETVNI-LENEM---LRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAY 164
           V  IL+S    F+  ++ +++     LR+ L       + P+++++G + GG +  +   
Sbjct: 22  VRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLRLN 81

Query: 165 KNGELQELLEKA 176
           ++GEL++LL+  
Sbjct: 82  ESGELRKLLKGI 93

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive. Length = 147

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	179
PRK10824	115	glutaredoxin-4; Provisional	100.0
COG0278	105	Glutaredoxin-related protein [Posttranslational mo	99.98
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	99.96
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	99.95
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	99.95
PHA03050	108	glutaredoxin; Provisional	99.95
PTZ00062	204	glutaredoxin; Provisional	99.95
KOG0911	227	consensus Glutaredoxin-related protein [Posttransl	99.94
KOG1752	104	consensus Glutaredoxin and related proteins [Postt	99.92
PRK10638	83	glutaredoxin 3; Provisional	99.89
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	99.89
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	99.86
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	99.85
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	99.84
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	99.83
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	99.83
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	99.82
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	99.81
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	99.79
cd03030	92	GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3	99.78
PRK11200	85	grxA glutaredoxin 1; Provisional	99.78
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	99.77
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	99.76
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	99.71
PRK12759	410	bifunctional gluaredoxin/ribonucleoside-diphosphat	99.69
PRK10329	81	glutaredoxin-like protein; Provisional	99.62
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	99.61
KOG2824	281	consensus Glutaredoxin-related protein [Posttransl	99.45
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	99.45
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	99.38
PF04908	99	SH3BGR: SH3-binding, glutamic acid-rich protein; I	99.31
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	99.26
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	99.14
cd03041	77	GST_N_2GST_N GST_N family, 2 repeats of the N-term	99.0
cd00570	71	GST_N_family Glutathione S-transferase (GST) famil	98.92
cd03040	77	GST_N_mPGES2 GST_N family; microsomal Prostaglandi	98.89
cd03037	71	GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) sub	98.83
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	98.59
cd03059	73	GST_N_SspA GST_N family, Stringent starvation prot	98.59
cd03055	89	GST_N_Omega GST_N family, Class Omega subfamily; G	98.59
cd03060	71	GST_N_Omega_like GST_N family, Omega-like subfamil	98.56
cd03045	74	GST_N_Delta_Epsilon GST_N family, Class Delta and	98.56
PF13417	75	GST_N_3: Glutathione S-transferase, N-terminal dom	98.55
cd03036	111	ArsC_like Arsenate Reductase (ArsC) family, unknow	98.54
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	98.5
cd03051	74	GST_N_GTT2_like GST_N family, Saccharomyces cerevi	98.49
PF05768	81	DUF836: Glutaredoxin-like domain (DUF836); InterPr	98.46
cd03056	73	GST_N_4 GST_N family, unknown subfamily 4; compose	98.46
cd02977	105	ArsC_family Arsenate Reductase (ArsC) family; comp	98.46
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	98.43
KOG3029	370	consensus Glutathione S-transferase-related protei	98.42
PRK01655	131	spxA transcriptional regulator Spx; Reviewed	98.37
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	98.3
cd03054	72	GST_N_Metaxin GST_N family, Metaxin subfamily; com	98.26
PHA02125	75	thioredoxin-like protein	98.25
TIGR01617	117	arsC_related transcriptional regulator, Spx/MgsR f	98.24
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	98.23
cd03061	91	GST_N_CLIC GST_N family, Chloride Intracellular Ch	98.23
cd03032	115	ArsC_Spx Arsenate Reductase (ArsC) family, Spx sub	98.22
PHA02278	103	thioredoxin-like protein	98.19
PRK12559	131	transcriptional regulator Spx; Provisional	98.11
cd03053	76	GST_N_Phi GST_N family, Class Phi subfamily; compo	98.1
cd03058	74	GST_N_Tau GST_N family, Class Tau subfamily; GSTs	98.08
PRK13344	132	spxA transcriptional regulator Spx; Reviewed	98.05
cd03052	73	GST_N_GDAP1 GST_N family, Ganglioside-induced diff	98.05
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	98.03
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	98.01
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	98.01
cd03035	105	ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb s	98.0
cd03076	73	GST_N_Pi GST_N family, Class Pi subfamily; GSTs ar	97.99
cd03039	72	GST_N_Sigma_like GST_N family, Class Sigma_like; c	97.95
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	97.94
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	97.92
cd03080	75	GST_N_Metaxin_like GST_N family, Metaxin subfamily	97.92
cd03033	113	ArsC_15kD Arsenate Reductase (ArsC) family, 15kD p	97.9
KOG4023	108	consensus Uncharacterized conserved protein [Funct	97.89
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	97.88
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	97.87
cd03042	73	GST_N_Zeta GST_N family, Class Zeta subfamily; GST	97.87
cd03049	73	GST_N_3 GST_N family, unknown subfamily 3; compose	97.85
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	97.81
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	97.81
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.8
TIGR02182	209	GRXB Glutaredoxin, GrxB family. This model include	97.8
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	97.8
cd03048	81	GST_N_Ure2p_like GST_N family, Ure2p-like subfamil	97.79
PRK10387	210	glutaredoxin 2; Provisional	97.78
cd03038	84	GST_N_etherase_LigE GST_N family, Beta etherase Li	97.77
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.74
cd02947	93	TRX_family TRX family; composed of two groups: Gro	97.71
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	97.7
PF13409	70	GST_N_2: Glutathione S-transferase, N-terminal dom	97.67
PRK09381	109	trxA thioredoxin; Provisional	97.65
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	97.64
cd03050	76	GST_N_Theta GST_N family, Class Theta subfamily; c	97.62
PTZ00051	98	thioredoxin; Provisional	97.61
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	97.6
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.58
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.58
PRK10996	139	thioredoxin 2; Provisional	97.56
COG1393	117	ArsC Arsenate reductase and related proteins, glut	97.54
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	97.54
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	97.53
TIGR00862	236	O-ClC intracellular chloride channel protein. Thes	97.51
cd03044	75	GST_N_EF1Bgamma GST_N family, Gamma subunit of Elo	97.49
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	97.48
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	97.47
COG4545	85	Glutaredoxin-related protein [Posttranslational mo	97.44
PRK09481	211	sspA stringent starvation protein A; Provisional	97.44
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	97.43
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	97.43
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	97.43
cd03047	73	GST_N_2 GST_N family, unknown subfamily 2; compose	97.43
TIGR01616	126	nitro_assoc nitrogenase-associated protein. This m	97.41
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	97.38
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	97.36
PRK10853	118	putative reductase; Provisional	97.35
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	97.35
PRK10026	141	arsenate reductase; Provisional	97.3
cd03034	112	ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC s	97.3
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	97.29
TIGR00014	114	arsC arsenate reductase (glutaredoxin). composed o	97.29
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	97.28
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	97.28
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	97.26
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	97.25
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	97.24
cd03043	73	GST_N_1 GST_N family, unknown subfamily 1; compose	97.24
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	97.21
cd03057	77	GST_N_Beta GST_N family, Class Beta subfamily; GST	97.21
cd03046	76	GST_N_GTT1_like GST_N family, Saccharomyces cerevi	97.21
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	97.2
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	97.17
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	97.14
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	97.14
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	97.13
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	97.13
PRK15113	214	glutathione S-transferase; Provisional	97.1
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	97.09
PLN02817	265	glutathione dehydrogenase (ascorbate)	97.04
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	97.03
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	96.99
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	96.96
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	96.92
PLN02378	213	glutathione S-transferase DHAR1	96.92
KOG0406	231	consensus Glutathione S-transferase [Posttranslati	96.92
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	96.88
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	96.87
PTZ00062	204	glutaredoxin; Provisional	96.8
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	96.79
PF03960	110	ArsC: ArsC family; InterPro: IPR006660 Several bac	96.75
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	96.67
PLN02473	214	glutathione S-transferase	96.63
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	96.63
COG3019	149	Predicted metal-binding protein [General function	96.62
PF13728	215	TraF: F plasmid transfer operon protein	96.58
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	96.5
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	96.32
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	96.29
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	96.27
TIGR01262	210	maiA maleylacetoacetate isomerase. Maleylacetoacet	96.25
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	96.19
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	96.19
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	96.19
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	96.16
cd03077	79	GST_N_Alpha GST_N family, Class Alpha subfamily; G	96.15
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	96.08
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	96.07
PRK13728	181	conjugal transfer protein TrbB; Provisional	95.98
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	95.98
COG2999	215	GrxB Glutaredoxin 2 [Posttranslational modificatio	95.94
cd03079	74	GST_N_Metaxin2 GST_N family, Metaxin subfamily, Me	95.85
KOG4244	281	consensus Failed axon connections (fax) protein/gl	95.78
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	95.76
COG0625	211	Gst Glutathione S-transferase [Posttranslational m	95.74
PLN02309	457	5'-adenylylsulfate reductase	95.69
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	95.61
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	95.58
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	95.55
KOG1422	221	consensus Intracellular Cl- channel CLIC, contains	95.42
PRK10357	202	putative glutathione S-transferase; Provisional	95.41
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	95.37
PLN02395	215	glutathione S-transferase	95.36
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	95.28
PRK13972	215	GSH-dependent disulfide bond oxidoreductase; Provi	95.17
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	95.13
cd03078	73	GST_N_Metaxin1_like GST_N family, Metaxin subfamil	95.13
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	95.08
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	94.9
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	94.89
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	94.87
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	94.83
PF06953	123	ArsD: Arsenical resistance operon trans-acting rep	94.77
PRK11752	264	putative S-transferase; Provisional	94.72
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	94.62
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	94.61
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	94.61
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	94.58
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	94.45
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	94.37
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	94.18
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	94.14
PTZ00102	477	disulphide isomerase; Provisional	94.05
PF02798	76	GST_N: Glutathione S-transferase, N-terminal domai	93.98
PTZ00057	205	glutathione s-transferase; Provisional	93.8
KOG0908	288	consensus Thioredoxin-like protein [Posttranslatio	93.72
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	93.69
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	93.63
smart00594	122	UAS UAS domain.	93.54
PRK10542	201	glutathionine S-transferase; Provisional	93.36
cd03075	82	GST_N_Mu GST_N family, Class Mu subfamily; GSTs ar	93.08
PTZ00102	477	disulphide isomerase; Provisional	92.86
PF07315	93	DUF1462: Protein of unknown function (DUF1462); In	92.68
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	92.6
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	92.5
KOG3425	128	consensus Uncharacterized conserved protein [Funct	92.46
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	92.1
PF06764	202	DUF1223: Protein of unknown function (DUF1223); In	92.07
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	91.98
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	91.72
COG4837	106	Uncharacterized protein conserved in bacteria [Fun	91.48
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	91.39
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	91.33
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	91.28
KOG1695	206	consensus Glutathione S-transferase [Posttranslati	91.08
COG2143	182	Thioredoxin-related protein [Posttranslational mod	90.91
KOG0867	226	consensus Glutathione S-transferase [Posttranslati	90.74
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	90.72
PF04134	114	DUF393: Protein of unknown function, DUF393; Inter	90.24
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	89.96
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	89.85
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	89.74
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	89.39
KOG0868	217	consensus Glutathione S-transferase [Posttranslati	89.08
KOG4277	468	consensus Uncharacterized conserved protein, conta	88.9
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	88.7
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	87.27
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	87.0
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	85.48
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	85.47
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	85.45
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	85.27
PF10568	72	Tom37: Outer mitochondrial membrane transport comp	84.42
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	84.03
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	83.84
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	83.78
cd03022	192	DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-car	83.39
PTZ00056	199	glutathione peroxidase; Provisional	83.19
cd03146	212	GAT1_Peptidase_E Type 1 glutamine amidotransferase	82.8
PLN02412	167	probable glutathione peroxidase	82.72
KOG4420	325	consensus Uncharacterized conserved protein (Gangl	81.54
COG5494	265	Predicted thioredoxin/glutaredoxin [Posttranslatio	80.81
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	80.2
PF01323	193	DSBA: DSBA-like thioredoxin domain; InterPro: IPR0	80.17

>PRK10824 glutaredoxin-4; Provisional

Probab=100.00  E-value=1.3e-32  Score=207.80  Aligned_cols=104  Identities=40%  Similarity=0.860  Sum_probs=100.6

Q ss_pred             HHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEe
Q 030327           76 ELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFG  155 (179)
Q Consensus        76 ~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IG  155 (179)
                      +..+++++++++++|+||+|++++.|+||||.+++++|+++|++|.++||+++++++++|++++||+|||||||||+|||
T Consensus         3 ~~~~~v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI~G~~IG   82 (115)
T PRK10824          3 TTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVG   82 (115)
T ss_pred             hHHHHHHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCCCCCCeEEECCEEEc
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecHHHHHHHHcccHHHHHHhhhcC
Q 030327          156 GCDITVEAYKNGELQELLEKALCT  179 (179)
Q Consensus       156 G~del~~l~~~GeL~~~L~~a~~~  179 (179)
                      |+|++.+++++|+|+++|+++|++
T Consensus        83 G~ddl~~l~~~G~L~~lL~~~~~~  106 (115)
T PRK10824         83 GCDIVIEMYQRGELQQLIKETAAK  106 (115)
T ss_pred             ChHHHHHHHHCCCHHHHHHHHHhh
Confidence            999999999999999999999874

>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=6.7e-32  Score=197.67  Aligned_cols=103  Identities=56%  Similarity=1.000  Sum_probs=99.4

Q ss_pred             HHHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcC-CCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEE
Q 030327           75 PELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLN-APFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEF  153 (179)
Q Consensus        75 ~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~g-v~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~  153 (179)
                      .++.+++++.+++++|++|+|+||.+|.|+|+.++.++|..+| ++|.++||..|+++|+.|+++++|+|+||+||||++
T Consensus         2 ~~i~~~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEf   81 (105)
T COG0278           2 MEILDRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEF   81 (105)
T ss_pred             chHHHHHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcCCCCCceeeECCEE
Confidence            3567889999999999999999999999999999999999999 899999999999999999999999999999999999


Q ss_pred             EeecHHHHHHHHcccHHHHHHhhh
Q 030327          154 FGGCDITVEAYKNGELQELLEKAL  177 (179)
Q Consensus       154 IGG~del~~l~~~GeL~~~L~~a~  177 (179)
                      |||+|.+.+|+++|||+++|++++
T Consensus        82 vGG~DIv~Em~q~GELq~~l~~~~  105 (105)
T COG0278          82 VGGCDIVREMYQSGELQTLLKEAG  105 (105)
T ss_pred             eccHHHHHHHHHcchHHHHHHhcC
Confidence            999999999999999999999874

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=99.96  E-value=4e-29  Score=183.04  Aligned_cols=96  Identities=58%  Similarity=1.073  Sum_probs=92.5

Q ss_pred             HHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeec
Q 030327           78 KSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGC  157 (179)
Q Consensus        78 ~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~  157 (179)
                      .+++++++++++|+||++++++.|+||||.+++++|+++|++|+++||+++++.+++|++++|++++|+|||||++|||+
T Consensus         2 ~~~v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~g~~iGG~   81 (97)
T TIGR00365         2 IERIKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVKGEFVGGC   81 (97)
T ss_pred             hHHHHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEECCEEEeCh
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcccHHHHH
Q 030327          158 DITVEAYKNGELQELL  173 (179)
Q Consensus       158 del~~l~~~GeL~~~L  173 (179)
                      |++.+++++|+|+++|
T Consensus        82 ddl~~l~~~g~L~~~l   97 (97)
T TIGR00365        82 DIIMEMYQSGELQTLL   97 (97)
T ss_pred             HHHHHHHHCcChHHhC
Confidence            9999999999999875

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=99.95  E-value=1.1e-27  Score=176.00  Aligned_cols=92  Identities=22%  Similarity=0.434  Sum_probs=86.1

Q ss_pred             HhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHH---HHHHHHHhcCCCCcceEeeCCEEEeecH
Q 030327           82 DKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEM---LRQGLKEYSSWPTFPQLYIEGEFFGGCD  158 (179)
Q Consensus        82 ~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~---~~~~L~~~sg~~tvP~VfIdG~~IGG~d  158 (179)
                      ++++++++|+||++     ++||||.+++++|+++|++|+++||+++++   .++++.+++|+.++|+|||||++|||+|
T Consensus         2 ~~~i~~~~Vvvysk-----~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~d   76 (99)
T TIGR02189         2 RRMVSEKAVVIFSR-----SSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLE   76 (99)
T ss_pred             hhhhccCCEEEEEC-----CCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHH
Confidence            56889999999999     499999999999999999999999987744   6678888899999999999999999999


Q ss_pred             HHHHHHHcccHHHHHHhhhc
Q 030327          159 ITVEAYKNGELQELLEKALC  178 (179)
Q Consensus       159 el~~l~~~GeL~~~L~~a~~  178 (179)
                      ++.+++++|+|+++|+++|+
T Consensus        77 dl~~l~~~G~L~~~l~~~~~   96 (99)
T TIGR02189        77 NVMALHISGSLVPMLKQAGA   96 (99)
T ss_pred             HHHHHHHcCCHHHHHHHhCc
Confidence            99999999999999999987

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=99.95  E-value=9.2e-28  Score=173.05  Aligned_cols=90  Identities=61%  Similarity=1.076  Sum_probs=87.0

Q ss_pred             HHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHH
Q 030327           81 LDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDIT  160 (179)
Q Consensus        81 l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del  160 (179)
                      +++++++++|+||++++++.|+||||.+++++|+++|++|+++||+.|++++++|.+.+|+.++|+|||||++|||++++
T Consensus         1 ~~~~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l   80 (90)
T cd03028           1 IKKLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVNGELVGGCDIV   80 (90)
T ss_pred             ChhhhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEECCEEEeCHHHH
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcccHH
Q 030327          161 VEAYKNGELQ  170 (179)
Q Consensus       161 ~~l~~~GeL~  170 (179)
                      ++++++|+|+
T Consensus        81 ~~l~~~g~L~   90 (90)
T cd03028          81 KEMHESGELQ   90 (90)
T ss_pred             HHHHHcCCcC
Confidence            9999999985

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>PHA03050 glutaredoxin; Provisional

Probab=99.95  E-value=4.3e-27  Score=175.77  Aligned_cols=96  Identities=23%  Similarity=0.395  Sum_probs=91.3

Q ss_pred             HHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCC---CeEEEEcCC---CHHHHHHHHHhcCCCCcceEeeCC
Q 030327           78 KSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNA---PFETVNILE---NEMLRQGLKEYSSWPTFPQLYIEG  151 (179)
Q Consensus        78 ~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv---~y~~vdV~~---d~~~~~~L~~~sg~~tvP~VfIdG  151 (179)
                      ++++++++++++|+||+++     |||||.+++++|+++++   +|+.+||+.   +.+++++|.+.+|+.|||+|||||
T Consensus         3 ~~~v~~~i~~~~V~vys~~-----~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g   77 (108)
T PHA03050          3 EEFVQQRLANNKVTIFVKF-----TCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGK   77 (108)
T ss_pred             HHHHHHHhccCCEEEEECC-----CChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECC
Confidence            5779999999999999995     99999999999999999   799999986   678999999999999999999999


Q ss_pred             EEEeecHHHHHHHHcccHHHHHHhhhc
Q 030327          152 EFFGGCDITVEAYKNGELQELLEKALC  178 (179)
Q Consensus       152 ~~IGG~del~~l~~~GeL~~~L~~a~~  178 (179)
                      ++|||+|++.+++++|+|+++|+++|+
T Consensus        78 ~~iGG~ddl~~l~~~g~L~~~l~~~~~  104 (108)
T PHA03050         78 TSIGGYSDLLEIDNMDALGDILSSIGV  104 (108)
T ss_pred             EEEeChHHHHHHHHcCCHHHHHHHccc
Confidence            999999999999999999999999986

>PTZ00062 glutaredoxin; Provisional

Probab=99.95  E-value=3.8e-27  Score=193.77  Aligned_cols=102  Identities=42%  Similarity=0.852  Sum_probs=98.3

Q ss_pred             CHHHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEE
Q 030327           74 TPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEF  153 (179)
Q Consensus        74 ~~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~  153 (179)
                      .+++.+++++++++++|+||+|++++.|+||||++++++|+++|++|.++||++|++++++|++++||+|+|||||||++
T Consensus        99 ~~~~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI~G~~  178 (204)
T PTZ00062         99 SEDTVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNWPTYPQLYVNGEL  178 (204)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEECCEE
Confidence            34688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecHHHHHHHHcccHHHHHHh
Q 030327          154 FGGCDITVEAYKNGELQELLEK  175 (179)
Q Consensus       154 IGG~del~~l~~~GeL~~~L~~  175 (179)
                      |||+|++++++++|+|+++|.+
T Consensus       179 IGG~d~l~~l~~~G~L~~~l~~  200 (204)
T PTZ00062        179 IGGHDIIKELYESNSLRKVIPD  200 (204)
T ss_pred             EcChHHHHHHHHcCChhhhhhh
Confidence            9999999999999999999964

>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=2e-26  Score=190.16  Aligned_cols=101  Identities=51%  Similarity=0.911  Sum_probs=98.4

Q ss_pred             HHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEe
Q 030327           76 ELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFG  155 (179)
Q Consensus        76 ~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IG  155 (179)
                      ++++.++++++.++|+||+||+|.+|.|+|+++++.+|+++|++|..+||.+|+++|+.+++++.|+|+|||||||+++|
T Consensus       127 ~~~~~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GEFiG  206 (227)
T KOG0911|consen  127 DLDNRLEKLVKAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGEFIG  206 (227)
T ss_pred             hHHHHHHHhcccCeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCEecc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecHHHHHHHHcccHHHHHHhh
Q 030327          156 GCDITVEAYKNGELQELLEKA  176 (179)
Q Consensus       156 G~del~~l~~~GeL~~~L~~a  176 (179)
                      |+|.+++|+++|+|+..|+++
T Consensus       207 GlDIl~~m~~~geL~~~l~~~  227 (227)
T KOG0911|consen  207 GLDILKEMHEKGELVYTLKEA  227 (227)
T ss_pred             CcHHHHHHhhcccHHHHhhcC
Confidence            999999999999999999875

>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=1.4e-24  Score=161.35  Aligned_cols=97  Identities=29%  Similarity=0.524  Sum_probs=90.8

Q ss_pred             HHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC---HHHHHHHHHhcCCCCcceEeeCCEE
Q 030327           77 LKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN---EMLRQGLKEYSSWPTFPQLYIEGEF  153 (179)
Q Consensus        77 ~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d---~~~~~~L~~~sg~~tvP~VfIdG~~  153 (179)
                      ..+++++++.+++||||+|+     +||||.+++.+|...++.+..+++|++   .+++++|.+++|.+|+|+|||+|++
T Consensus         3 ~~~~v~~~i~~~~VVifSKs-----~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~   77 (104)
T KOG1752|consen    3 AEAKVRKMISENPVVIFSKS-----SCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKF   77 (104)
T ss_pred             HHHHHHHHhhcCCEEEEECC-----cCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEE
Confidence            34579999999999999996     999999999999999999999998764   6899999999999999999999999


Q ss_pred             EeecHHHHHHHHcccHHHHHHhhhc
Q 030327          154 FGGCDITVEAYKNGELQELLEKALC  178 (179)
Q Consensus       154 IGG~del~~l~~~GeL~~~L~~a~~  178 (179)
                      |||+++++++|.+|+|.++|+.+|+
T Consensus        78 iGG~~dl~~lh~~G~L~~~l~~~~~  102 (104)
T KOG1752|consen   78 IGGASDLMALHKSGELVPLLKEAGA  102 (104)
T ss_pred             EcCHHHHHHHHHcCCHHHHHHHhhc
Confidence            9999999999999999999999986

>PRK10638 glutaredoxin 3; Provisional

Probab=99.89  E-value=7.9e-23  Score=144.58  Aligned_cols=82  Identities=28%  Similarity=0.520  Sum_probs=78.4

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHcc
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNG  167 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~G  167 (179)
                      .+|++|++     ++||||++++.+|+++|++|+++||+.+++.++++.+.+|..++|+||+||++|||+|++.+++++|
T Consensus         2 ~~v~ly~~-----~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~~g   76 (83)
T PRK10638          2 ANVEIYTK-----ATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDARG   76 (83)
T ss_pred             CcEEEEEC-----CCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHHcC
Confidence            37999999     4999999999999999999999999999989999999999999999999999999999999999999


Q ss_pred             cHHHHHH
Q 030327          168 ELQELLE  174 (179)
Q Consensus       168 eL~~~L~  174 (179)
                      +|+++|+
T Consensus        77 ~l~~~~~   83 (83)
T PRK10638         77 GLDPLLK   83 (83)
T ss_pred             CHHHHhC
Confidence            9999885

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=99.89  E-value=1.1e-22  Score=141.72  Aligned_cols=79  Identities=28%  Similarity=0.529  Sum_probs=75.9

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHcccH
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGEL  169 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~GeL  169 (179)
                      |+||++     ++||+|.+++++|+++|++|+++||+.+++.++++.+.+|+.++|+|||||++|||++++.+++++|+|
T Consensus         1 v~ly~~-----~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~g~l   75 (79)
T TIGR02181         1 VTIYTK-----PYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDREGKL   75 (79)
T ss_pred             CEEEec-----CCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHcCCh
Confidence            689999     599999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHH
Q 030327          170 QELL  173 (179)
Q Consensus       170 ~~~L  173 (179)
                      +++|
T Consensus        76 ~~~l   79 (79)
T TIGR02181        76 DPLL   79 (79)
T ss_pred             hhhC
Confidence            9875

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=99.86  E-value=1.8e-21  Score=152.88  Aligned_cols=88  Identities=23%  Similarity=0.448  Sum_probs=80.4

Q ss_pred             cEEEEEee-CCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCC----CCcceEeeCCEEEeecHHHHHH
Q 030327           89 KVVLFMKG-TKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSW----PTFPQLYIEGEFFGGCDITVEA  163 (179)
Q Consensus        89 ~Vvlysk~-t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~----~tvP~VfIdG~~IGG~del~~l  163 (179)
                      +|+||+.+ .....+||+|++|+++|++++|+|+++||+.|++.+++|++++|.    .++|||||||++|||+|++++|
T Consensus         1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~L   80 (147)
T cd03031           1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLRL   80 (147)
T ss_pred             CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHHH
Confidence            58999995 223337999999999999999999999999999999999998775    8999999999999999999999


Q ss_pred             HHcccHHHHHHhh
Q 030327          164 YKNGELQELLEKA  176 (179)
Q Consensus       164 ~~~GeL~~~L~~a  176 (179)
                      +++|+|+++|+.+
T Consensus        81 ~e~G~L~~lL~~~   93 (147)
T cd03031          81 NESGELRKLLKGI   93 (147)
T ss_pred             HHcCCHHHHHhhc
Confidence            9999999999875

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=99.85  E-value=7.8e-21  Score=130.50  Aligned_cols=74  Identities=26%  Similarity=0.508  Sum_probs=70.2

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCC-CcceEeeCCEEEeecHHHHHHHHcc
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWP-TFPQLYIEGEFFGGCDITVEAYKNG  167 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~-tvP~VfIdG~~IGG~del~~l~~~G  167 (179)
                      +|+||++     ++||+|.+++++|+++|++|+++||+.+++.++++.+.+|+. ++|+||+||++|||++++++++++|
T Consensus         1 ~i~ly~~-----~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~~g   75 (75)
T cd03418           1 KVEIYTK-----PNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALERKG   75 (75)
T ss_pred             CEEEEeC-----CCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHhCc
Confidence            4899999     499999999999999999999999999999999999888887 9999999999999999999999987

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=99.84  E-value=1.9e-20  Score=129.10  Aligned_cols=73  Identities=18%  Similarity=0.292  Sum_probs=69.1

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      .+|+||++     ++||+|++|+++|+++|++|+.+||.++++.++++++++|..++|+||+||++|||+|++.+|++
T Consensus         1 ~~v~ly~~-----~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~~~~   73 (73)
T cd03027           1 GRVTIYSR-----LGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFFNEKLVGGLTDLKSLEE   73 (73)
T ss_pred             CEEEEEec-----CCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHhhcC
Confidence            36999999     49999999999999999999999999999999999999999999999999999999999998853

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>TIGR02180 GRX_euk Glutaredoxin

Probab=99.83  E-value=2.7e-20  Score=129.62  Aligned_cols=79  Identities=35%  Similarity=0.669  Sum_probs=72.3

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCC--eEEEEcCCC---HHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHH
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAP--FETVNILEN---EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAY  164 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~--y~~vdV~~d---~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~  164 (179)
                      |++|++     +|||+|++++++|++++++  |+.+||+.+   .+.++++.+.+|..++|+||+||++|||++++++++
T Consensus         1 V~~f~~-----~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~   75 (84)
T TIGR02180         1 VVVFSK-----SYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALY   75 (84)
T ss_pred             CEEEEC-----CCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHH
Confidence            688999     5999999999999999998  888888653   567788999999999999999999999999999999


Q ss_pred             HcccHHHHH
Q 030327          165 KNGELQELL  173 (179)
Q Consensus       165 ~~GeL~~~L  173 (179)
                      ++|+|+++|
T Consensus        76 ~~g~l~~~~   84 (84)
T TIGR02180        76 KSGKLAELL   84 (84)
T ss_pred             HcCChhhhC
Confidence            999999875

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=3e-20  Score=131.69  Aligned_cols=76  Identities=26%  Similarity=0.538  Sum_probs=70.4

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCH--HHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHc
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENE--MLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKN  166 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~--~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~  166 (179)
                      .|+||++     ++||||.+++++|+++|++|+++|++.++  +.++.+++..|..|+|||||||++|||++++.++...
T Consensus         2 ~v~iyt~-----~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~~~   76 (80)
T COG0695           2 NVTIYTK-----PGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALEAK   76 (80)
T ss_pred             CEEEEEC-----CCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHHhh
Confidence            5899999     59999999999999999999999998887  7778888877999999999999999999999999988


Q ss_pred             ccH
Q 030327          167 GEL  169 (179)
Q Consensus       167 GeL  169 (179)
                      |.|
T Consensus        77 ~~l   79 (80)
T COG0695          77 GKL   79 (80)
T ss_pred             ccC
Confidence            876

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=99.82  E-value=5.3e-20  Score=128.00  Aligned_cols=79  Identities=30%  Similarity=0.556  Sum_probs=72.3

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC---HHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN---EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d---~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      +|++|++     ++||+|.+++++|++++++|+.+|++.+   .++++++++++|+.++|+||+||+++||+++++++.+
T Consensus         1 ~v~~y~~-----~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~   75 (82)
T cd03419           1 PVVVFSK-----SYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHK   75 (82)
T ss_pred             CEEEEEc-----CCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHH
Confidence            5899999     4999999999999999999999888654   5678889999999999999999999999999999999


Q ss_pred             cccHHHH
Q 030327          166 NGELQEL  172 (179)
Q Consensus       166 ~GeL~~~  172 (179)
                      +|+|+++
T Consensus        76 ~g~l~~~   82 (82)
T cd03419          76 SGKLVKL   82 (82)
T ss_pred             cCCccCC
Confidence            9999763

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=99.81  E-value=2.2e-19  Score=126.06  Aligned_cols=75  Identities=27%  Similarity=0.431  Sum_probs=67.5

Q ss_pred             hhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHH
Q 030327           84 VVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEA  163 (179)
Q Consensus        84 li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l  163 (179)
                      +-++++|+||++     ++||+|++++++|+++|++|+++||+.+++. +++++.+|+.++|+||+||++|||++++.++
T Consensus         4 ~~~~~~V~ly~~-----~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~-~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~   77 (79)
T TIGR02190         4 ARKPESVVVFTK-----PGCPFCAKAKATLKEKGYDFEEIPLGNDARG-RSLRAVTGATTVPQVFIGGKLIGGSDELEAY   77 (79)
T ss_pred             cCCCCCEEEEEC-----CCCHhHHHHHHHHHHcCCCcEEEECCCChHH-HHHHHHHCCCCcCeEEECCEEEcCHHHHHHH
Confidence            456889999999     5999999999999999999999999887664 4677788999999999999999999999886


Q ss_pred             H
Q 030327          164 Y  164 (179)
Q Consensus       164 ~  164 (179)
                      .
T Consensus        78 l   78 (79)
T TIGR02190        78 L   78 (79)
T ss_pred             h
Confidence            4

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=99.79  E-value=4.6e-19  Score=121.72  Aligned_cols=70  Identities=26%  Similarity=0.459  Sum_probs=64.4

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHH
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAY  164 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~  164 (179)
                      +|+||++.     +||+|.+++++|+++|++|+++||+.+++ .++++..+|..++|+|||||++|||++++.++.
T Consensus         2 ~v~lys~~-----~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~-~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l   71 (72)
T cd03029           2 SVSLFTKP-----GCPFCARAKAALQENGISYEEIPLGKDIT-GRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYF   71 (72)
T ss_pred             eEEEEECC-----CCHHHHHHHHHHHHcCCCcEEEECCCChh-HHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHh
Confidence            69999995     99999999999999999999999998874 467788889999999999999999999999874

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif

Probab=99.78  E-value=6.5e-19  Score=128.31  Aligned_cols=85  Identities=26%  Similarity=0.363  Sum_probs=74.7

Q ss_pred             EEEEEeeC-CCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCC----CCcceEeeCCEEEeecHHHHHHH
Q 030327           90 VVLFMKGT-KDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSW----PTFPQLYIEGEFFGGCDITVEAY  164 (179)
Q Consensus        90 Vvlysk~t-~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~----~tvP~VfIdG~~IGG~del~~l~  164 (179)
                      |+||+.+. ....-=..|.+++.+|+.++|+|+++||+.|++.++++.+.+|.    .++|||||||+||||+|++.++.
T Consensus         2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~l~   81 (92)
T cd03030           2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFEAK   81 (92)
T ss_pred             EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHHHH
Confidence            67787762 22222347999999999999999999999999999999999864    99999999999999999999999


Q ss_pred             HcccHHHHHH
Q 030327          165 KNGELQELLE  174 (179)
Q Consensus       165 ~~GeL~~~L~  174 (179)
                      ++|+|+++|+
T Consensus        82 e~g~L~~lLk   91 (92)
T cd03030          82 ENNTLEEFLK   91 (92)
T ss_pred             hCCCHHHHhC
Confidence            9999999986

The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=99.78  E-value=1.6e-18  Score=122.84  Aligned_cols=73  Identities=21%  Similarity=0.411  Sum_probs=66.8

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHh-----cCCCeEEEEcCCCHHHHHHHHHhcCC--CCcceEeeCCEEEeecHHHH
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKS-----LNAPFETVNILENEMLRQGLKEYSSW--PTFPQLYIEGEFFGGCDITV  161 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~-----~gv~y~~vdV~~d~~~~~~L~~~sg~--~tvP~VfIdG~~IGG~del~  161 (179)
                      +|+||++     ++||+|++|+++|++     .+++|+++||+++...++++.+++|+  .++|+|||||++|||++++.
T Consensus         2 ~v~iy~~-----~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~   76 (85)
T PRK11200          2 FVVIFGR-----PGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKHIGGCTDFE   76 (85)
T ss_pred             EEEEEeC-----CCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHH
Confidence            6999999     599999999999999     79999999999887777888888876  89999999999999999999


Q ss_pred             HHHHc
Q 030327          162 EAYKN  166 (179)
Q Consensus       162 ~l~~~  166 (179)
                      ++.++
T Consensus        77 ~~~~~   81 (85)
T PRK11200         77 AYVKE   81 (85)
T ss_pred             HHHHH
Confidence            98764

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=99.77  E-value=1.9e-18  Score=123.40  Aligned_cols=74  Identities=23%  Similarity=0.451  Sum_probs=65.7

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcC-----CCeEEEEcCCCHHHHHHHHHhcCC--CCcceEeeCCEEEeecHHHHH
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLN-----APFETVNILENEMLRQGLKEYSSW--PTFPQLYIEGEFFGGCDITVE  162 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~g-----v~y~~vdV~~d~~~~~~L~~~sg~--~tvP~VfIdG~~IGG~del~~  162 (179)
                      |+||++     ++||||.+|+++|++++     ++|+++|+..+...++++.+.+|+  .++|+|||||++|||+|++.+
T Consensus         2 V~vys~-----~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~   76 (86)
T TIGR02183         2 VVIFGR-----PGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQ   76 (86)
T ss_pred             EEEEeC-----CCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHH
Confidence            789999     49999999999999984     679999998777667788888886  899999999999999999999


Q ss_pred             HHHccc
Q 030327          163 AYKNGE  168 (179)
Q Consensus       163 l~~~Ge  168 (179)
                      +++++.
T Consensus        77 ~~~~~~   82 (86)
T TIGR02183        77 LVKENF   82 (86)
T ss_pred             HHHhcc
Confidence            987753

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=99.76  E-value=5.2e-18  Score=113.17  Aligned_cols=71  Identities=45%  Similarity=0.809  Sum_probs=67.8

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHH
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAY  164 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~  164 (179)
                      +|++|++.     +||+|++++.+|++++++|+++|+..+++.++++.+++|..++|++|+||+++||++++++++
T Consensus         1 ~v~ly~~~-----~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~~   71 (72)
T cd02066           1 KVVVFSKS-----TCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFINGEFIGGYDDLKALH   71 (72)
T ss_pred             CEEEEECC-----CCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHhh
Confidence            58999994     999999999999999999999999999999999999999999999999999999999999886

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=99.71  E-value=4.5e-17  Score=108.18  Aligned_cols=60  Identities=37%  Similarity=0.705  Sum_probs=57.9

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEE
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFF  154 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~I  154 (179)
                      |++|++     ++||+|.+++++|+++|++|+++||+++++.++++++.+|..++|+|||||++|
T Consensus         1 V~vy~~-----~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i~g~~I   60 (60)
T PF00462_consen    1 VVVYTK-----PGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFIDGKFI   60 (60)
T ss_dssp             EEEEES-----TTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred             cEEEEc-----CCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEECCEEC
Confidence            789999     599999999999999999999999999999999999999999999999999987

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional

Probab=99.69  E-value=1.1e-16  Score=143.56  Aligned_cols=82  Identities=17%  Similarity=0.328  Sum_probs=71.1

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHH--------HhcCCCCcceEeeCCEEEeecHH
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLK--------EYSSWPTFPQLYIEGEFFGGCDI  159 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~--------~~sg~~tvP~VfIdG~~IGG~de  159 (179)
                      .+|+||++     ++||+|+++|++|+++|++|+++||+++++..+.+.        ..+|..++|||||||++|||+|+
T Consensus         2 ~~V~vys~-----~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~   76 (410)
T PRK12759          2 VEVRIYTK-----TNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDN   76 (410)
T ss_pred             CcEEEEeC-----CCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchH
Confidence            46999999     499999999999999999999999998875444222        23689999999999999999999


Q ss_pred             HHHHHHcccHHHHHHhh
Q 030327          160 TVEAYKNGELQELLEKA  176 (179)
Q Consensus       160 l~~l~~~GeL~~~L~~a  176 (179)
                      +.+  .+|+|.++|+..
T Consensus        77 l~~--~~g~l~~~~~~~   91 (410)
T PRK12759         77 LMA--RAGEVIARVKGS   91 (410)
T ss_pred             HHH--HhCCHHHHhcCC
Confidence            987  899999998754

>PRK10329 glutaredoxin-like protein; Provisional

Probab=99.62  E-value=4.3e-15  Score=105.38  Aligned_cols=69  Identities=13%  Similarity=0.289  Sum_probs=62.4

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecH--HHHHH
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCD--ITVEA  163 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~d--el~~l  163 (179)
                      +|+||++     ++||+|++++++|+++|++|+++||+++++..++++. .|..++|+|+++|+.++|++  ++.++
T Consensus         2 ~v~lYt~-----~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~-~g~~~vPvv~i~~~~~~Gf~~~~l~~~   72 (81)
T PRK10329          2 RITIYTR-----NDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRA-QGFRQLPVVIAGDLSWSGFRPDMINRL   72 (81)
T ss_pred             EEEEEeC-----CCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-cCCCCcCEEEECCEEEecCCHHHHHHH
Confidence            6899999     4999999999999999999999999999998888877 49999999999999999996  34444

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=99.61  E-value=2.6e-15  Score=103.30  Aligned_cols=64  Identities=19%  Similarity=0.323  Sum_probs=58.4

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCE-EEeecHH
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGE-FFGGCDI  159 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~-~IGG~de  159 (179)
                      |+||++     ++||+|++++++|+++|++|+++||+++++.++++++. |..++|+|++||+ +|||++.
T Consensus         1 v~ly~~-----~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~-g~~~vP~v~~~g~~~~~G~~~   65 (72)
T TIGR02194         1 ITVYSK-----NNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQ-GFRQVPVIVADGDLSWSGFRP   65 (72)
T ss_pred             CEEEeC-----CCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHc-CCcccCEEEECCCcEEeccCH
Confidence            579999     59999999999999999999999999999999998875 9999999999775 9999973

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.45  E-value=2.1e-13  Score=115.91  Aligned_cols=90  Identities=20%  Similarity=0.388  Sum_probs=79.2

Q ss_pred             CCcEEEEEee-CCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCC----CCcceEeeCCEEEeecHHHH
Q 030327           87 GNKVVLFMKG-TKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSW----PTFPQLYIEGEFFGGCDITV  161 (179)
Q Consensus        87 ~~~Vvlysk~-t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~----~tvP~VfIdG~~IGG~del~  161 (179)
                      .+.||+|+.+ ..-......|..|+.+|++.+|.|.+.||..|...+++|+++.|.    .++|+|||+|++|||.++++
T Consensus       130 e~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV~  209 (281)
T KOG2824|consen  130 EDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVFVKGRYIGGAEEVV  209 (281)
T ss_pred             CceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccCeEEEccEEeccHHHhh
Confidence            4679999997 222334568999999999999999999999999999999988764    67999999999999999999


Q ss_pred             HHHHcccHHHHHHhh
Q 030327          162 EAYKNGELQELLEKA  176 (179)
Q Consensus       162 ~l~~~GeL~~~L~~a  176 (179)
                      +|++.|+|.++|+..
T Consensus       210 ~LnE~GkL~~lL~~~  224 (281)
T KOG2824|consen  210 RLNEEGKLGKLLKGI  224 (281)
T ss_pred             hhhhcchHHHHHhcC
Confidence            999999999999864

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=99.45  E-value=8.6e-13  Score=88.32  Aligned_cols=66  Identities=18%  Similarity=0.263  Sum_probs=60.5

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHH
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDI  159 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~de  159 (179)
                      .|++|+..     ||++|++++.+|++.+++|..+|++.+++..+++.+..|..++|+++++|+.++|++.
T Consensus         1 ~i~lf~~~-----~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~~   66 (74)
T TIGR02196         1 KVKVYTTP-----WCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIGHKIIVGFDP   66 (74)
T ss_pred             CEEEEcCC-----CChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEECCEEEeeCCH
Confidence            37899994     9999999999999999999999999998888888888899999999999999999853

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=99.38  E-value=3.6e-12  Score=85.25  Aligned_cols=66  Identities=23%  Similarity=0.454  Sum_probs=61.0

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHH
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDI  159 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~de  159 (179)
                      +|++|+..     ||++|.+++.+|++.+++|..+|++.+++..+++.+.++..++|+|+++|+.++|++.
T Consensus         1 ~v~l~~~~-----~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~~~~i~g~~~   66 (73)
T cd02976           1 EVTVYTKP-----DCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGDEHLSGFRP   66 (73)
T ss_pred             CEEEEeCC-----CChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEECCEEEecCCH
Confidence            47899994     9999999999999999999999999888888889888888999999999999999874

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised

Probab=99.31  E-value=1.3e-11  Score=91.04  Aligned_cols=87  Identities=29%  Similarity=0.411  Sum_probs=63.7

Q ss_pred             cEEEEEeeCC-CCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcC---------CCCcceEeeCCEEEeecH
Q 030327           89 KVVLFMKGTK-DFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSS---------WPTFPQLYIEGEFFGGCD  158 (179)
Q Consensus        89 ~Vvlysk~t~-~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg---------~~tvP~VfIdG~~IGG~d  158 (179)
                      .|.||..+.. +..==..+.++..+|+.++|+|+.+||..|++.|+.+++..|         .+-.||||+||+++|+++
T Consensus         2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdye   81 (99)
T PF04908_consen    2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDYE   81 (99)
T ss_dssp             SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEHH
T ss_pred             EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeHH
Confidence            3667776520 000013578999999999999999999999999999998773         344589999999999999


Q ss_pred             HHHHHHHcccHHHHHHh
Q 030327          159 ITVEAYKNGELQELLEK  175 (179)
Q Consensus       159 el~~l~~~GeL~~~L~~  175 (179)
                      ++.++.++|+|.+.|+-
T Consensus        82 ~f~ea~E~~~L~~fL~L   98 (99)
T PF04908_consen   82 DFEEANENGELEEFLKL   98 (99)
T ss_dssp             HHHHHHCTT-HHHHHT-
T ss_pred             HHHHHHhhCHHHHHhCc
Confidence            99999999999999864

SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=99.26  E-value=5.6e-11  Score=80.92  Aligned_cols=65  Identities=22%  Similarity=0.401  Sum_probs=56.8

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhc-CCCCcceEee-CCEEEeecH
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYS-SWPTFPQLYI-EGEFFGGCD  158 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~s-g~~tvP~VfI-dG~~IGG~d  158 (179)
                      +|++|+..     ||++|++++.+|++++++|+.+|+++++...+++.+++ |..++|+|++ ||+.+...+
T Consensus         1 ~v~ly~~~-----~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~~   67 (77)
T TIGR02200         1 TITVYGTT-----WCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKFADGSFLTNPS   67 (77)
T ss_pred             CEEEEECC-----CChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCceeCEEEECCCeEecCCC
Confidence            47899995     99999999999999999999999999988888888886 8899999976 667766543

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=99.14  E-value=1.6e-10  Score=77.55  Aligned_cols=58  Identities=21%  Similarity=0.332  Sum_probs=49.2

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEe
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFG  155 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IG  155 (179)
                      .|++|++     +|||+|.+++++|+++     +++|..+|++++++    +.+..|..++|++++||++++
T Consensus         2 ~v~~f~~-----~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~----l~~~~~i~~vPti~i~~~~~~   64 (67)
T cd02973           2 NIEVFVS-----PTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPD----LADEYGVMSVPAIVINGKVEF   64 (67)
T ss_pred             EEEEEEC-----CCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHh----HHHHcCCcccCEEEECCEEEE
Confidence            4889999     4999999999999876     68899999988765    344568889999999999886

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins

Probab=99.00  E-value=4.1e-09  Score=73.04  Aligned_cols=72  Identities=15%  Similarity=0.039  Sum_probs=61.4

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CCEEEeecHHHHHHHHc
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEFFGGCDITVEAYKN  166 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG~~IGG~del~~l~~~  166 (179)
                      ++||+.     +.||+|.+++.+|+++|++|+.+++..++....++.+.++..++|++..  +|..+.+.+.+.++.++
T Consensus         2 ~~Ly~~-----~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~   75 (77)
T cd03041           2 LELYEF-----EGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLFK   75 (77)
T ss_pred             ceEecC-----CCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHH
Confidence            578888     4999999999999999999999999877666677888888899999977  36788888888887543

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=98.92  E-value=4.6e-09  Score=68.36  Aligned_cols=69  Identities=19%  Similarity=0.123  Sum_probs=57.5

Q ss_pred             EEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHH
Q 030327           91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAY  164 (179)
Q Consensus        91 vlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~  164 (179)
                      .+|..     ++||+|.+++.+|+..|++|+.++++.++....++++.++..++|.+..+|..+++...+.++.
T Consensus         2 ~ly~~-----~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~es~~I~~yl   70 (71)
T cd00570           2 KLYYF-----PGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPLGKVPVLEDGGLVLTESLAILEYL   70 (71)
T ss_pred             EEEeC-----CCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHh
Confidence            57777     4899999999999999999999998654332226777889999999999999999998877653

In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma

>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2

Probab=98.89  E-value=1.8e-08  Score=69.24  Aligned_cols=70  Identities=26%  Similarity=0.492  Sum_probs=56.8

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeC----CEEEeecHHHHHHH
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIE----GEFFGGCDITVEAY  164 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfId----G~~IGG~del~~l~  164 (179)
                      ++.||+.     +.||+|++++.+|.++|++|+.++++.  ..+.+++ ..+..++|++.++    |+.+.....+.++.
T Consensus         1 ~i~Ly~~-----~~~p~c~kv~~~L~~~gi~y~~~~~~~--~~~~~~~-~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL   72 (77)
T cd03040           1 KITLYQY-----KTCPFCCKVRAFLDYHGIPYEVVEVNP--VSRKEIK-WSSYKKVPILRVESGGDGQQLVDSSVIISTL   72 (77)
T ss_pred             CEEEEEc-----CCCHHHHHHHHHHHHCCCceEEEECCc--hhHHHHH-HhCCCccCEEEECCCCCccEEEcHHHHHHHH
Confidence            4789999     499999999999999999999999853  2233443 4688999999987    78888888888775


Q ss_pred             Hc
Q 030327          165 KN  166 (179)
Q Consensus       165 ~~  166 (179)
                      ++
T Consensus        73 ~~   74 (77)
T cd03040          73 KT   74 (77)
T ss_pred             HH
Confidence            43

Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.

>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E

Probab=98.83  E-value=2.3e-08  Score=67.75  Aligned_cols=68  Identities=18%  Similarity=0.209  Sum_probs=55.3

Q ss_pred             EEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeC-CEEEeecHHHHHHHH
Q 030327           91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIE-GEFFGGCDITVEAYK  165 (179)
Q Consensus        91 vlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfId-G~~IGG~del~~l~~  165 (179)
                      .+|..     ++||||.+++-+|..+|++|+.++++.++.. . ..+..+..++|+++++ |..+++...+.++.+
T Consensus         2 ~Ly~~-----~~~p~~~rvr~~L~~~gl~~~~~~~~~~~~~-~-~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL~   70 (71)
T cd03037           2 KLYIY-----EHCPFCVKARMIAGLKNIPVEQIILQNDDEA-T-PIRMIGAKQVPILEKDDGSFMAESLDIVAFID   70 (71)
T ss_pred             ceEec-----CCCcHhHHHHHHHHHcCCCeEEEECCCCchH-H-HHHhcCCCccCEEEeCCCeEeehHHHHHHHHh
Confidence            46777     4999999999999999999999988754322 2 2345678899999997 899999999988764

coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=98.59  E-value=1.5e-07  Score=67.76  Aligned_cols=70  Identities=19%  Similarity=0.280  Sum_probs=55.4

Q ss_pred             HHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCC
Q 030327           77 LKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEG  151 (179)
Q Consensus        77 ~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG  151 (179)
                      ..+.++++-+.-.|.+|..     +||++|..+.++++++     +++|..+|+++.++..+    .+|...+|.+++||
T Consensus         3 ~~~~~~~l~~pv~i~~F~~-----~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~----~~~V~~vPt~vidG   73 (89)
T cd03026           3 LLEQIRRLNGPINFETYVS-----LSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVE----ERGIMSVPAIFLNG   73 (89)
T ss_pred             HHHHHHhcCCCEEEEEEEC-----CCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHH----HcCCccCCEEEECC
Confidence            4566777666668999988     5999999999988665     68899999987765433    45777899999999


Q ss_pred             EEEe
Q 030327          152 EFFG  155 (179)
Q Consensus       152 ~~IG  155 (179)
                      +.++
T Consensus        74 ~~~~   77 (89)
T cd03026          74 ELFG   77 (89)
T ss_pred             EEEE
Confidence            8876

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E

Probab=98.59  E-value=2.9e-07  Score=62.09  Aligned_cols=69  Identities=20%  Similarity=0.280  Sum_probs=56.2

Q ss_pred             EEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327           91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        91 vlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      ++|+.     +.|++|++++.+|+..|++|+.++++... ...++++.....++|++..||..+.....+.++.+
T Consensus         2 ~ly~~-----~~~~~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~   70 (73)
T cd03059           2 TLYSG-----PDDVYSHRVRIVLAEKGVSVEIIDVDPDN-PPEDLAELNPYGTVPTLVDRDLVLYESRIIMEYLD   70 (73)
T ss_pred             EEEEC-----CCChhHHHHHHHHHHcCCccEEEEcCCCC-CCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHH
Confidence            67887     48999999999999999999998886432 22456667788899999989988888888877754

coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.

>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=98.59  E-value=3.1e-07  Score=65.42  Aligned_cols=72  Identities=21%  Similarity=0.254  Sum_probs=59.5

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeC-CEEEeecHHHHHHH
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIE-GEFFGGCDITVEAY  164 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfId-G~~IGG~del~~l~  164 (179)
                      ...+.+|+.     +.||+|.+++-+|...|++|+.++++... ..+++.+.++..++|++.+| |..+.....+.++.
T Consensus        16 ~~~~~Ly~~-----~~sp~~~kv~~~L~~~gl~~~~~~v~~~~-~~~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~yL   88 (89)
T cd03055          16 PGIIRLYSM-----RFCPYAQRARLVLAAKNIPHEVININLKD-KPDWFLEKNPQGKVPALEIDEGKVVYESLIICEYL   88 (89)
T ss_pred             CCcEEEEeC-----CCCchHHHHHHHHHHcCCCCeEEEeCCCC-CcHHHHhhCCCCCcCEEEECCCCEEECHHHHHHhh
Confidence            355899998     48999999999999999999999886432 23456778888999999998 88888888887764

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega

>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs

Probab=98.56  E-value=3.4e-07  Score=62.14  Aligned_cols=67  Identities=13%  Similarity=0.099  Sum_probs=54.3

Q ss_pred             EEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeC-CEEEeecHHHHHH
Q 030327           91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIE-GEFFGGCDITVEA  163 (179)
Q Consensus        91 vlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfId-G~~IGG~del~~l  163 (179)
                      ++|+.     ++||+|.+++.+|+++|++|+.++++... ..+++.+.++..++|.+..+ |..+.....+.++
T Consensus         2 ~ly~~-----~~~p~~~rv~~~L~~~gl~~e~~~v~~~~-~~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~y   69 (71)
T cd03060           2 ILYSF-----RRCPYAMRARMALLLAGITVELREVELKN-KPAEMLAASPKGTVPVLVLGNGTVIEESLDIMRW   69 (71)
T ss_pred             EEEec-----CCCcHHHHHHHHHHHcCCCcEEEEeCCCC-CCHHHHHHCCCCCCCEEEECCCcEEecHHHHHHh
Confidence            57777     49999999999999999999999886432 12566778889999999995 8888877777654

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r

>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=98.56  E-value=3.5e-07  Score=61.93  Aligned_cols=70  Identities=16%  Similarity=0.140  Sum_probs=57.9

Q ss_pred             EEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcC--CCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327           91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNIL--ENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        91 vlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~--~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      .+|+.     +.|++|++++-+|+++|++|+.++++  .++...+++.+.+...++|.+..+|..+.....+.++..
T Consensus         2 ~Ly~~-----~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~   73 (74)
T cd03045           2 DLYYL-----PGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIYLV   73 (74)
T ss_pred             EEEeC-----CCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHHHh
Confidence            57877     59999999999999999999998886  344455778888888899999999988888877776643

GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.

>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A

Probab=98.55  E-value=2.7e-07  Score=63.46  Aligned_cols=69  Identities=22%  Similarity=0.303  Sum_probs=59.0

Q ss_pred             EEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHc
Q 030327           92 LFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKN  166 (179)
Q Consensus        92 lysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~  166 (179)
                      ||+.     ++||||.+++-+|+.+|++|+.++++.... +..+.+.++..++|.+..||..+.+...+.++.++
T Consensus         1 Ly~~-----~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~-~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~~   69 (75)
T PF13417_consen    1 LYGF-----PGSPYSQKVRLALEEKGIPYELVPVDPEEK-RPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYLEE   69 (75)
T ss_dssp             EEEE-----TTSHHHHHHHHHHHHHTEEEEEEEEBTTST-SHHHHHHSTTSBSSEEEETTEEEESHHHHHHHHHH
T ss_pred             CCCc-----CCChHHHHHHHHHHHcCCeEEEeccCcccc-hhHHHhhcccccceEEEECCEEEeCHHHHHHHHHH
Confidence            4666     599999999999999999999999864432 66778888999999999999999999988887543

...

>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC

Probab=98.54  E-value=8.9e-08  Score=71.40  Aligned_cols=46  Identities=15%  Similarity=0.391  Sum_probs=39.0

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcC
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSS  140 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg  140 (179)
                      |+||+.     ++|++|++++++|+++|++|+++|+.+++..+++|.++.+
T Consensus         1 i~iY~~-----~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~~   46 (111)
T cd03036           1 LKFYEY-----PKCSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWLE   46 (111)
T ss_pred             CEEEEC-----CCCHHHHHHHHHHHHcCCceEEecccCCcccHHHHHHHHH
Confidence            579999     5999999999999999999999999888766666655443

Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=98.50  E-value=7.7e-07  Score=61.08  Aligned_cols=55  Identities=22%  Similarity=0.471  Sum_probs=43.1

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHh----cC--CCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCE
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKS----LN--APFETVNILENEMLRQGLKEYSSWPTFPQLYIEGE  152 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~----~g--v~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~  152 (179)
                      .|++|+.     +||++|+.++..|++    ++  +.+..+|++++++..    +..|..++|++++||+
T Consensus         2 ~v~~f~~-----~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~----~~~~v~~vPt~~~~g~   62 (82)
T TIGR00411         2 KIELFTS-----PTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKA----MEYGIMAVPAIVINGD   62 (82)
T ss_pred             EEEEEEC-----CCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHH----HHcCCccCCEEEECCE
Confidence            4788998     599999999999865    34  567788887776543    3368889999999997

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S

Probab=98.49  E-value=4.9e-07  Score=60.65  Aligned_cols=69  Identities=14%  Similarity=0.084  Sum_probs=54.7

Q ss_pred             EEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCC--CHHHHHHHHHhcCCCCcceEee-CCEEEeecHHHHHHH
Q 030327           91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE--NEMLRQGLKEYSSWPTFPQLYI-EGEFFGGCDITVEAY  164 (179)
Q Consensus        91 vlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~--d~~~~~~L~~~sg~~tvP~VfI-dG~~IGG~del~~l~  164 (179)
                      .+|+.     ++|++|.+++-+|..+|++|+.++++.  +.....++.+.++..++|.+.+ ||..+.....+.++.
T Consensus         2 ~Ly~~-----~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~yL   73 (74)
T cd03051           2 KLYDS-----PTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRYL   73 (74)
T ss_pred             EEEeC-----CCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHHh
Confidence            57887     589999999999999999999888753  2233456778888899999997 667777777776653

cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.

>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=98.46  E-value=1.7e-06  Score=60.83  Aligned_cols=53  Identities=30%  Similarity=0.517  Sum_probs=43.1

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcC----CCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCC
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLN----APFETVNILENEMLRQGLKEYSSWPTFPQLYIEG  151 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~g----v~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG  151 (179)
                      +|++|++     ++|+.|..++++|.+..    +.++.+||++|++    |.+.+|. .+|++.++|
T Consensus         1 ~l~l~~k-----~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~----l~~~Y~~-~IPVl~~~~   57 (81)
T PF05768_consen    1 TLTLYTK-----PGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPE----LFEKYGY-RIPVLHIDG   57 (81)
T ss_dssp             -EEEEE------SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHH----HHHHSCT-STSEEEETT
T ss_pred             CEEEEcC-----CCCChHHHHHHHHHHHHhhcCceEEEEECCCCHH----HHHHhcC-CCCEEEEcC
Confidence            4899999     69999999999999754    5689999998887    4445564 799999999

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.

>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs

Probab=98.46  E-value=1e-06  Score=59.11  Aligned_cols=69  Identities=19%  Similarity=0.223  Sum_probs=56.6

Q ss_pred             EEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCC--CHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHH
Q 030327           91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE--NEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAY  164 (179)
Q Consensus        91 vlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~--d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~  164 (179)
                      ++|..     +.|++|.+++-+|...|++|+.++++.  ++...+++.+.+...++|.+..+|..+.....+.++.
T Consensus         2 ~Ly~~-----~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~yl   72 (73)
T cd03056           2 KLYGF-----PLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGRVLAESNAILVYL   72 (73)
T ss_pred             EEEeC-----CCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHHHh
Confidence            57777     589999999999999999999998863  3344566777778889999999999988888777653

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx

Probab=98.46  E-value=1.8e-07  Score=68.63  Aligned_cols=46  Identities=20%  Similarity=0.422  Sum_probs=38.9

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcC
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSS  140 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg  140 (179)
                      |+||++     ++|++|++++++|++.|++|+++|+.+++..+++|.++.+
T Consensus         1 i~iY~~-----~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~~   46 (105)
T cd02977           1 ITIYGN-----PNCSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELLA   46 (105)
T ss_pred             CEEEEC-----CCCHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHH
Confidence            579999     5999999999999999999999999887665666666544

ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=98.43  E-value=2.7e-06  Score=63.35  Aligned_cols=66  Identities=18%  Similarity=0.272  Sum_probs=47.2

Q ss_pred             HHHH-HHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcC-----CCeEEEEcCCCHHHHHHHHHhcCCCCcceEee
Q 030327           76 ELKS-TLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLN-----APFETVNILENEMLRQGLKEYSSWPTFPQLYI  149 (179)
Q Consensus        76 ~~~~-~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~g-----v~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI  149 (179)
                      ++.+ ..+++.+...+++|...    +||++|+.++++|++..     +.+..+|++++++    +.+.+|..++|.+++
T Consensus        10 ~~~~~~~~~l~~~~~vvv~f~a----~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~----l~~~~~v~~vPt~~i   81 (113)
T cd02975          10 ALKEEFFKEMKNPVDLVVFSSK----EGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKE----KAEKYGVERVPTTIF   81 (113)
T ss_pred             HHHHHHHHHhCCCeEEEEEeCC----CCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHH----HHHHcCCCcCCEEEE
Confidence            3344 33445555667777543    69999999999997653     5688889887764    445568889999977

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]

Probab=98.42  E-value=1.5e-06  Score=74.97  Aligned_cols=85  Identities=27%  Similarity=0.500  Sum_probs=66.7

Q ss_pred             HhhhcCC--cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHH
Q 030327           82 DKVVTGN--KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDI  159 (179)
Q Consensus        82 ~~li~~~--~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~de  159 (179)
                      -.-++..  ++++|...     .||||-+|+.+|+-+|++|..|+|  |+-.|++++ ++..+.||.+.++|+.+-...-
T Consensus        81 ~~~ld~s~L~l~LyQye-----tCPFCcKVrAFLDyhgisY~VVEV--npV~r~eIk-~SsykKVPil~~~Geqm~dSsv  152 (370)
T KOG3029|consen   81 ATRLDGSPLDLVLYQYE-----TCPFCCKVRAFLDYHGISYAVVEV--NPVLRQEIK-WSSYKKVPILLIRGEQMVDSSV  152 (370)
T ss_pred             HhhcCCCCceEEEEeec-----cCchHHHHHHHHhhcCCceEEEEe--cchhhhhcc-ccccccccEEEeccceechhHH
Confidence            3344444  79999994     899999999999999999999999  677778876 6789999999999998877776


Q ss_pred             HHHHH------HcccHHHHHH
Q 030327          160 TVEAY------KNGELQELLE  174 (179)
Q Consensus       160 l~~l~------~~GeL~~~L~  174 (179)
                      +..+.      ....|.++.+
T Consensus       153 IIs~laTyLq~~~q~l~eiiq  173 (370)
T KOG3029|consen  153 IISLLATYLQDKRQDLGEIIQ  173 (370)
T ss_pred             HHHHHHHHhccCCCCHHHHHH
Confidence            66654      3345555543

>PRK01655 spxA transcriptional regulator Spx; Reviewed

Probab=98.37  E-value=8.4e-07  Score=68.20  Aligned_cols=40  Identities=25%  Similarity=0.446  Sum_probs=34.6

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHH
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQG  134 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~  134 (179)
                      |+||+.     ++|++|++++++|+++|++|+++|+.+++..+++
T Consensus         2 i~iY~~-----~~C~~C~ka~~~L~~~gi~~~~idi~~~~~~~~e   41 (131)
T PRK01655          2 VTLFTS-----PSCTSCRKAKAWLEEHDIPFTERNIFSSPLTIDE   41 (131)
T ss_pred             EEEEeC-----CCChHHHHHHHHHHHcCCCcEEeeccCChhhHHH
Confidence            789999     5999999999999999999999999876544333

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=98.30  E-value=3e-06  Score=58.83  Aligned_cols=54  Identities=13%  Similarity=0.279  Sum_probs=41.5

Q ss_pred             EEEEEeeCCCCCCCchHHHH----HHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEE
Q 030327           90 VVLFMKGTKDFPQCGFSHTV----VQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFF  154 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~a----k~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~I  154 (179)
                      |.+|+.      |||.|+.+    .+++++++++++.++|++.++    ..+ .|..++|.+++||+.+
T Consensus         3 i~~~a~------~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~~~----a~~-~~v~~vPti~i~G~~~   60 (76)
T TIGR00412         3 IQIYGT------GCANCQMTEKNVKKAVEELGIDAEFEKVTDMNE----ILE-AGVTATPGVAVDGELV   60 (76)
T ss_pred             EEEECC------CCcCHHHHHHHHHHHHHHcCCCeEEEEeCCHHH----HHH-cCCCcCCEEEECCEEE
Confidence            566653      99999999    557788899999999974333    222 4889999999999766

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins

Probab=98.26  E-value=6.8e-06  Score=55.70  Aligned_cols=58  Identities=21%  Similarity=0.172  Sum_probs=49.8

Q ss_pred             CCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHc
Q 030327          101 PQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKN  166 (179)
Q Consensus       101 p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~  166 (179)
                      ..||+|.+++.+|+.+|++|+.++++...        .+...++|++..+|+.+.++..+.++.++
T Consensus        14 s~sp~~~~v~~~L~~~~i~~~~~~~~~~~--------~~p~g~vP~l~~~g~~l~es~~I~~yL~~   71 (72)
T cd03054          14 SLSPECLKVETYLRMAGIPYEVVFSSNPW--------RSPTGKLPFLELNGEKIADSEKIIEYLKK   71 (72)
T ss_pred             CCCHHHHHHHHHHHhCCCceEEEecCCcc--------cCCCcccCEEEECCEEEcCHHHHHHHHhh
Confidence            38999999999999999999999986532        45677899999999999999988887653

Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.

>PHA02125 thioredoxin-like protein

Probab=98.25  E-value=5.1e-06  Score=57.33  Aligned_cols=56  Identities=18%  Similarity=0.253  Sum_probs=39.9

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEe
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFG  155 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IG  155 (179)
                      |++|+.     +||++|+.++.+|++..+.+..+|.+++.    ++.+..+...+|++. +|+.++
T Consensus         2 iv~f~a-----~wC~~Ck~~~~~l~~~~~~~~~vd~~~~~----~l~~~~~v~~~PT~~-~g~~~~   57 (75)
T PHA02125          2 IYLFGA-----EWCANCKMVKPMLANVEYTYVDVDTDEGV----ELTAKHHIRSLPTLV-NTSTLD   57 (75)
T ss_pred             EEEEEC-----CCCHhHHHHHHHHHHHhheEEeeeCCCCH----HHHHHcCCceeCeEE-CCEEEE
Confidence            678888     59999999999998765444444444444    445556778999976 776554

>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family

Probab=98.24  E-value=2.5e-06  Score=63.91  Aligned_cols=44  Identities=16%  Similarity=0.325  Sum_probs=38.0

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHh
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEY  138 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~  138 (179)
                      |.||+.     ++|++|++|+++|++.|++|+.+|+.+++.-+++|.++
T Consensus         1 i~iY~~-----~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l   44 (117)
T TIGR01617         1 IKVYGS-----PNCTTCKKARRWLEANGIEYQFIDIGEDGPTREELLDI   44 (117)
T ss_pred             CEEEeC-----CCCHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHHH
Confidence            468998     59999999999999999999999998887766666544

This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=98.23  E-value=7.9e-06  Score=61.89  Aligned_cols=73  Identities=12%  Similarity=0.225  Sum_probs=46.5

Q ss_pred             HHHhhhcCC-cEEEEEeeCCCCCCCchHHHHHHHHHhc----CCCeEEEEcCCCH--------HHHHHHHHhcC----CC
Q 030327           80 TLDKVVTGN-KVVLFMKGTKDFPQCGFSHTVVQILKSL----NAPFETVNILENE--------MLRQGLKEYSS----WP  142 (179)
Q Consensus        80 ~l~~li~~~-~Vvlysk~t~~~p~Cp~C~~ak~lL~~~----gv~y~~vdV~~d~--------~~~~~L~~~sg----~~  142 (179)
                      .+++.++++ .+++|...    +|||+|+.+...|.+.    ++++.++|++.+.        ++. ++.+..+    ..
T Consensus        15 ~~~~~i~~~~~~iv~f~~----~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~-~~~~~~~i~~~i~   89 (122)
T TIGR01295        15 RALEALDKKETATFFIGR----KTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLT-AFRSRFGIPTSFM   89 (122)
T ss_pred             HHHHHHHcCCcEEEEEEC----CCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHH-HHHHHcCCcccCC
Confidence            355555554 44554443    6999999988877554    6789999998543        222 3333333    34


Q ss_pred             CcceE--eeCCEEEeec
Q 030327          143 TFPQL--YIEGEFFGGC  157 (179)
Q Consensus       143 tvP~V--fIdG~~IGG~  157 (179)
                      .+|.+  |.||+.++..
T Consensus        90 ~~PT~v~~k~Gk~v~~~  106 (122)
T TIGR01295        90 GTPTFVHITDGKQVSVR  106 (122)
T ss_pred             CCCEEEEEeCCeEEEEE
Confidence            48887  6799887655

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins

Probab=98.23  E-value=1.2e-05  Score=58.43  Aligned_cols=78  Identities=18%  Similarity=0.268  Sum_probs=61.1

Q ss_pred             CcEEEEEeeC---CCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHH
Q 030327           88 NKVVLFMKGT---KDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAY  164 (179)
Q Consensus        88 ~~Vvlysk~t---~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~  164 (179)
                      ..+.+|.|..   +....|+||++++-.|.++|++|+.++|+.+.. -+.+.+++-...+|.+..+|..+...+.+.++.
T Consensus         4 p~~el~vka~~~~~~~g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~-p~~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYL   82 (91)
T cd03061           4 PEIELFVKASSDGESIGNCPFCQRLFMVLWLKGVVFNVTTVDMKRK-PEDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFL   82 (91)
T ss_pred             CcEEEEEEeccCCCCCCCChhHHHHHHHHHHCCCceEEEEeCCCCC-CHHHHHhCCCCCCCEEEECCEEecCHHHHHHHH
Confidence            4577888763   224679999999999999999999998864321 145677777789999999999999888888875


Q ss_pred             Hc
Q 030327          165 KN  166 (179)
Q Consensus       165 ~~  166 (179)
                      ++
T Consensus        83 de   84 (91)
T cd03061          83 EE   84 (91)
T ss_pred             HH
Confidence            43

They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI

>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes

Probab=98.22  E-value=2.9e-06  Score=63.44  Aligned_cols=44  Identities=27%  Similarity=0.544  Sum_probs=36.7

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHh
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEY  138 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~  138 (179)
                      |.||+.     ++|++|++++++|++.|++|+.+|+.+++.-+++|.++
T Consensus         2 i~iY~~-----~~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~~   45 (115)
T cd03032           2 IKLYTS-----PSCSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKEI   45 (115)
T ss_pred             EEEEeC-----CCCHHHHHHHHHHHHCCCceEEEecCCCcchHHHHHHH
Confidence            679999     59999999999999999999999998775544444443

It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.

>PHA02278 thioredoxin-like protein

Probab=98.19  E-value=1.4e-05  Score=59.01  Aligned_cols=67  Identities=16%  Similarity=0.345  Sum_probs=46.7

Q ss_pred             hcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCEEEe
Q 030327           85 VTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEFFG  155 (179)
Q Consensus        85 i~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~~IG  155 (179)
                      -+...|+|+...    +||+.|+.+...|++.      .+++..+|++.++.....+.+..+-.++|++  |-||+.++
T Consensus        12 ~~~~~vvV~F~A----~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~~v~   86 (103)
T PHA02278         12 RQKKDVIVMITQ----DNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQLVK   86 (103)
T ss_pred             hCCCcEEEEEEC----CCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCEEEE
Confidence            346677777776    8999999999888554      2458888998763223335555566677776  67998764

>PRK12559 transcriptional regulator Spx; Provisional

Probab=98.11  E-value=4.8e-06  Score=64.11  Aligned_cols=34  Identities=24%  Similarity=0.400  Sum_probs=31.7

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN  128 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d  128 (179)
                      |+||+.     ++|+.|++++++|++.|++|+++|+..+
T Consensus         2 i~iY~~-----~~C~~crkA~~~L~~~gi~~~~~di~~~   35 (131)
T PRK12559          2 VVLYTT-----ASCASCRKAKAWLEENQIDYTEKNIVSN   35 (131)
T ss_pred             EEEEeC-----CCChHHHHHHHHHHHcCCCeEEEEeeCC
Confidence            789999     6999999999999999999999999765

>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins

Probab=98.10  E-value=2.5e-05  Score=53.10  Aligned_cols=72  Identities=11%  Similarity=0.017  Sum_probs=58.8

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC--HHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHc
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN--EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKN  166 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d--~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~  166 (179)
                      +.+|..     +.|++|.+++-+|...|++|+.++++..  +...+.+.+.+...++|.+..+|..+.....+.++.++
T Consensus         2 ~~Ly~~-----~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL~~   75 (76)
T cd03053           2 LKLYGA-----AMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYLAE   75 (76)
T ss_pred             eEEEeC-----CCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHhh
Confidence            567887     5899999999999999999999887642  23345677788889999999999999888888887643

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t

>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=98.08  E-value=2.5e-05  Score=53.07  Aligned_cols=69  Identities=20%  Similarity=0.073  Sum_probs=53.4

Q ss_pred             EEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcC-CCCcceEeeCCEEEeecHHHHHHHH
Q 030327           91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSS-WPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        91 vlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg-~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      .+|..     +.|++|.+++-+|...|++|+.++++.. ....++++... ..++|.+..+|..+.+...+.++.+
T Consensus         2 ~Ly~~-----~~sp~~~~v~~~l~~~gl~~~~~~~~~~-~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~   71 (74)
T cd03058           2 KLLGA-----WASPFVLRVRIALALKGVPYEYVEEDLG-NKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYID   71 (74)
T ss_pred             EEEEC-----CCCchHHHHHHHHHHcCCCCEEEEeCcc-cCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHH
Confidence            46766     4899999999999999999999887543 11234555555 4799999999988888888877654

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,

>PRK13344 spxA transcriptional regulator Spx; Reviewed

Probab=98.05  E-value=6.6e-06  Score=63.41  Aligned_cols=34  Identities=9%  Similarity=0.248  Sum_probs=31.4

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN  128 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d  128 (179)
                      |+||+.     ++|+.|++++++|+++|++|+++|+..+
T Consensus         2 i~iY~~-----~~C~~crkA~~~L~~~~i~~~~~d~~~~   35 (132)
T PRK13344          2 IKIYTI-----SSCTSCKKAKTWLNAHQLSYKEQNLGKE   35 (132)
T ss_pred             EEEEeC-----CCCHHHHHHHHHHHHcCCCeEEEECCCC
Confidence            789999     5999999999999999999999999754

>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells

Probab=98.05  E-value=2.1e-05  Score=54.07  Aligned_cols=69  Identities=13%  Similarity=0.037  Sum_probs=56.5

Q ss_pred             EEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC--HHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHH
Q 030327           91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN--EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAY  164 (179)
Q Consensus        91 vlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d--~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~  164 (179)
                      ++|..     +.|++|.+++-+|.++|++|+.++++..  +....++.+.+...++|.+..||..+.....+.++.
T Consensus         2 ~ly~~-----~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~yL   72 (73)
T cd03052           2 VLYHW-----TQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDYL   72 (73)
T ss_pred             EEecC-----CCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHh
Confidence            56777     4899999999999999999999887542  233456888888999999999999888888877664

More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=98.03  E-value=2.1e-05  Score=56.68  Aligned_cols=65  Identities=12%  Similarity=0.110  Sum_probs=42.9

Q ss_pred             HHhhhcCCc-EEEEEeeCCCCCCCchHHHHHHHH------Hh-c--CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee
Q 030327           81 LDKVVTGNK-VVLFMKGTKDFPQCGFSHTVVQIL------KS-L--NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI  149 (179)
Q Consensus        81 l~~li~~~~-Vvlysk~t~~~p~Cp~C~~ak~lL------~~-~--gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI  149 (179)
                      +++++++++ |+|+...    +||++|++....+      .+ +  ++.+..+|++++......+.+..+..++|.+++
T Consensus         4 ~~~~~~~~k~vlv~f~a----~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~   78 (104)
T cd02953           4 LAQALAQGKPVFVDFTA----DWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLF   78 (104)
T ss_pred             HHHHHHcCCeEEEEEEc----chhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEE
Confidence            455555655 4444444    6999999987544      11 1  466777788776555566666678899998743

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=98.01  E-value=6.2e-05  Score=55.50  Aligned_cols=67  Identities=22%  Similarity=0.268  Sum_probs=47.3

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCEEEeecHHH
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEFFGGCDIT  160 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~~IGG~del  160 (179)
                      ..|+|+...    |||+.|+.+...|+++     ++.|-.+|++++     .+.+..+-..+|.+  |.||+.++...-.
T Consensus        25 ~~vvv~F~a----~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-----~l~~~~~i~~~Pt~~~f~~G~~v~~~~G~   95 (113)
T cd02957          25 TRVVVHFYE----PGFPRCKILDSHLEELAAKYPETKFVKINAEKA-----FLVNYLDIKVLPTLLVYKNGELIDNIVGF   95 (113)
T ss_pred             CEEEEEEeC----CCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-----HHHHhcCCCcCCEEEEEECCEEEEEEecH
Confidence            456665554    7999999999888653     456777777544     44555577788877  7799988766555


Q ss_pred             HHH
Q 030327          161 VEA  163 (179)
Q Consensus       161 ~~l  163 (179)
                      ..+
T Consensus        96 ~~~   98 (113)
T cd02957          96 EEL   98 (113)
T ss_pred             HHh
Confidence            554

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.01  E-value=1.8e-05  Score=62.46  Aligned_cols=69  Identities=23%  Similarity=0.292  Sum_probs=48.8

Q ss_pred             HHHHHHhhhcCC-c-EEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE-
Q 030327           77 LKSTLDKVVTGN-K-VVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQL-  147 (179)
Q Consensus        77 ~~~~l~~li~~~-~-Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V-  147 (179)
                      ..++-++++++. + +|-|..     +||+.|+.+..+|+++      .+++..+|+|++.++.+.    ++-..+|.+ 
T Consensus        50 ~~~~~~~Vi~S~~PVlVdF~A-----~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~----Y~I~avPtvl  120 (150)
T KOG0910|consen   50 DSEFDDKVINSDVPVLVDFHA-----EWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAED----YEISAVPTVL  120 (150)
T ss_pred             HHHHHHHHHccCCCEEEEEec-----CcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhh----cceeeeeEEE
Confidence            344445555553 3 455555     6999999999999876      356788899888876544    455678887 


Q ss_pred             -eeCCEEE
Q 030327          148 -YIEGEFF  154 (179)
Q Consensus       148 -fIdG~~I  154 (179)
                       |.||+.+
T Consensus       121 vfknGe~~  128 (150)
T KOG0910|consen  121 VFKNGEKV  128 (150)
T ss_pred             EEECCEEe
Confidence             7799766

>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC

Probab=98.00  E-value=7.2e-06  Score=60.77  Aligned_cols=36  Identities=8%  Similarity=0.224  Sum_probs=32.3

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHH
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEM  130 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~  130 (179)
                      |++|+.     |+|+.|++++++|++.|++|+++|+.+++.
T Consensus         1 i~iy~~-----~~C~~crka~~~L~~~~i~~~~~di~~~p~   36 (105)
T cd03035           1 ITLYGI-----KNCDTVKKARKWLEARGVAYTFHDYRKDGL   36 (105)
T ss_pred             CEEEeC-----CCCHHHHHHHHHHHHcCCCeEEEecccCCC
Confidence            578999     699999999999999999999999987643

The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.

>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=97.99  E-value=7.2e-05  Score=51.02  Aligned_cols=70  Identities=13%  Similarity=0.098  Sum_probs=57.2

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      +++|..     +.|+.|.+++-+|...|++|+.+.++. +...++++..+...++|.+..||..+.+...+.++..
T Consensus         2 ~~Ly~~-----~~~~~~~~v~~~L~~~~i~~e~~~v~~-~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~   71 (73)
T cd03076           2 YTLTYF-----PVRGRAEAIRLLLADQGISWEEERVTY-EEWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHLG   71 (73)
T ss_pred             cEEEEe-----CCcchHHHHHHHHHHcCCCCEEEEecH-HHhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHHh
Confidence            567777     379999999999999999999998864 2334466777778899999999999999888887754

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w

>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha

Probab=97.95  E-value=6.5e-05  Score=50.72  Aligned_cols=69  Identities=19%  Similarity=0.196  Sum_probs=54.8

Q ss_pred             EEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHH
Q 030327           91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAY  164 (179)
Q Consensus        91 vlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~  164 (179)
                      ++|..     +.|+.|.+++-+|...|++|+.++++........+...+...++|.+..+|..+.....+.++.
T Consensus         2 ~Ly~~-----~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~yL   70 (72)
T cd03039           2 KLTYF-----NIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPFGQLPVLEIDGKKLTQSNAILRYL   70 (72)
T ss_pred             EEEEE-----cCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcCCCCCEEEECCEEEEecHHHHHHh
Confidence            56666     4899999999999999999999988643222233566677889999999999998888887764

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=97.94  E-value=4.3e-05  Score=56.86  Aligned_cols=65  Identities=17%  Similarity=0.209  Sum_probs=47.0

Q ss_pred             cCCcEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCEEEeecH
Q 030327           86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEFFGGCD  158 (179)
Q Consensus        86 ~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~~IGG~d  158 (179)
                      +...|+++...    +||+.|+.+...|.++     ++.+..+|+++++++.+.    .+-..+|.+  |-+|+.++-..
T Consensus        21 ~~~~vvV~f~a----~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~----~~v~~vPt~l~fk~G~~v~~~~   92 (113)
T cd02989          21 SSERVVCHFYH----PEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEK----LNIKVLPTVILFKNGKTVDRIV   92 (113)
T ss_pred             CCCcEEEEEEC----CCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHH----CCCccCCEEEEEECCEEEEEEE
Confidence            34567777665    7999999999888663     577888999888765544    355567766  77998776443

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=97.92  E-value=7.1e-05  Score=56.55  Aligned_cols=60  Identities=15%  Similarity=0.110  Sum_probs=43.1

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhc-----C-CCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCEEEe
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSL-----N-APFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEFFG  155 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----g-v~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~~IG  155 (179)
                      ..|+|+...    +||+.|+.+..+|+++     + +.|-.+|+++++++.+.    .|-..+|.+  |-||+.++
T Consensus        15 ~~vVV~F~A----~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~----~~V~~iPTf~~fk~G~~v~   82 (114)
T cd02954          15 KVVVIRFGR----DWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKM----YELYDPPTVMFFFRNKHMK   82 (114)
T ss_pred             CEEEEEEEC----CCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHH----cCCCCCCEEEEEECCEEEE
Confidence            345554443    6999999999988654     2 46788999988865443    456677776  77998875

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs

Probab=97.92  E-value=8e-05  Score=51.00  Aligned_cols=69  Identities=14%  Similarity=0.176  Sum_probs=53.0

Q ss_pred             EEEEEeeCC--CCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHc
Q 030327           90 VVLFMKGTK--DFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKN  166 (179)
Q Consensus        90 Vvlysk~t~--~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~  166 (179)
                      ++||.....  -...||+|.+++.+|...|++|+.++++.        +..+...++|.+..||+.+.+...+.++.++
T Consensus         2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~--------~~~~p~g~vPvl~~~g~~l~eS~~I~~yL~~   72 (75)
T cd03080           2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGL--------AKRSPKGKLPFIELNGEKIADSELIIDHLEE   72 (75)
T ss_pred             EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCc--------ccCCCCCCCCEEEECCEEEcCHHHHHHHHHH
Confidence            456666310  01258999999999999999999988753        2456788999999999999999888876543

Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele

>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC

Probab=97.90  E-value=1.7e-05  Score=59.65  Aligned_cols=36  Identities=17%  Similarity=0.418  Sum_probs=32.6

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCH
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENE  129 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~  129 (179)
                      .|+||+.     |.|..|++++++|+++|++|+++|+.+++
T Consensus         1 ~i~iy~~-----p~C~~crkA~~~L~~~gi~~~~~d~~~~p   36 (113)
T cd03033           1 DIIFYEK-----PGCANNARQKALLEAAGHEVEVRDLLTEP   36 (113)
T ss_pred             CEEEEEC-----CCCHHHHHHHHHHHHcCCCcEEeehhcCC
Confidence            3789999     69999999999999999999999997653

It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.

>KOG4023 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.89  E-value=1.9e-05  Score=58.31  Aligned_cols=88  Identities=22%  Similarity=0.353  Sum_probs=65.7

Q ss_pred             cEEEEEeeCCCCCC-CchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHH--------HHhcCCCCcceEeeCCEEEeecHH
Q 030327           89 KVVLFMKGTKDFPQ-CGFSHTVVQILKSLNAPFETVNILENEMLRQGL--------KEYSSWPTFPQLYIEGEFFGGCDI  159 (179)
Q Consensus        89 ~Vvlysk~t~~~p~-Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L--------~~~sg~~tvP~VfIdG~~IGG~de  159 (179)
                      .|.+|.++.+-.+. =-.=.++..+|+...+.|..+||..+++.+++.        +-..|.+.-||||-++++.|++|.
T Consensus         3 ~irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~~~GnplPPqifn~d~Y~Gdye~   82 (108)
T KOG4023|consen    3 VIRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRPLNGNPLPPQIFNGDQYCGDYEL   82 (108)
T ss_pred             ceEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcCCCCCCCCcccccCccccccHHH
Confidence            46677765211000 001236777899999999999998776665544        334688999999999999999999


Q ss_pred             HHHHHHcccHHHHHHhh
Q 030327          160 TVEAYKNGELQELLEKA  176 (179)
Q Consensus       160 l~~l~~~GeL~~~L~~a  176 (179)
                      +.+..+++-|++.|+-+
T Consensus        83 F~ea~E~ntl~eFL~la   99 (108)
T KOG4023|consen   83 FFEAVEQNTLQEFLGLA   99 (108)
T ss_pred             HHHHHHHHHHHHHHccC
Confidence            99999999999999754

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=97.88  E-value=8.4e-05  Score=51.43  Aligned_cols=49  Identities=29%  Similarity=0.528  Sum_probs=35.8

Q ss_pred             CCCchHHHHHHHH----HhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEE
Q 030327          101 PQCGFSHTVVQIL----KSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFF  154 (179)
Q Consensus       101 p~Cp~C~~ak~lL----~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~I  154 (179)
                      ++|++|..+.+++    .+.+++++.+|+ .+.   +++ ..+|-.++|.++|||+.+
T Consensus         8 ~~C~~C~~~~~~~~~~~~~~~i~~ei~~~-~~~---~~~-~~ygv~~vPalvIng~~~   60 (76)
T PF13192_consen    8 PGCPYCPELVQLLKEAAEELGIEVEIIDI-EDF---EEI-EKYGVMSVPALVINGKVV   60 (76)
T ss_dssp             SSCTTHHHHHHHHHHHHHHTTEEEEEEET-TTH---HHH-HHTT-SSSSEEEETTEEE
T ss_pred             CCCCCcHHHHHHHHHHHHhcCCeEEEEEc-cCH---HHH-HHcCCCCCCEEEECCEEE
Confidence            3799999777755    556888988888 332   223 345889999999999854

...

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=97.87  E-value=5.2e-05  Score=62.20  Aligned_cols=72  Identities=17%  Similarity=0.252  Sum_probs=51.5

Q ss_pred             cCCHHHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcce
Q 030327           72 ALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQ  146 (179)
Q Consensus        72 ~~~~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~  146 (179)
                      .++++..+.++.+-+.-.|++|+.     +||++|..++.+++++     .+.+..+|++.++++.+    ..|..++|+
T Consensus       119 ~L~~~~~~~l~~~~~pv~I~~F~a-----~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~----~~~V~~vPt  189 (215)
T TIGR02187       119 GLSEKTVELLQSLDEPVRIEVFVT-----PTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAE----KYGVMSVPK  189 (215)
T ss_pred             CCCHHHHHHHHhcCCCcEEEEEEC-----CCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHH----HhCCccCCE
Confidence            455666666666444445666777     5999999999999775     36677788887766544    457778999


Q ss_pred             EeeCCE
Q 030327          147 LYIEGE  152 (179)
Q Consensus       147 VfIdG~  152 (179)
                      ++++++
T Consensus       190 l~i~~~  195 (215)
T TIGR02187       190 IVINKG  195 (215)
T ss_pred             EEEecC
Confidence            988753

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=97.87  E-value=6.5e-05  Score=50.31  Aligned_cols=69  Identities=19%  Similarity=0.169  Sum_probs=54.5

Q ss_pred             EEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCC--CHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHH
Q 030327           91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE--NEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAY  164 (179)
Q Consensus        91 vlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~--d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~  164 (179)
                      ++|..     +.|++|.+++.+|..+|++|+.++++.  +.....++.+.+...++|++..+|..+.....+.++.
T Consensus         2 ~L~~~-----~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL   72 (73)
T cd03042           2 ILYSY-----FRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEYL   72 (73)
T ss_pred             EEecC-----CCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEECCEEEEcHHHHHHHh
Confidence            46655     479999999999999999999887753  2233456677778889999999999888888777664

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.

>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs

Probab=97.85  E-value=6.2e-05  Score=50.87  Aligned_cols=68  Identities=18%  Similarity=0.186  Sum_probs=52.4

Q ss_pred             EEEEeeCCCCCCCchHHHHHHHHHh--cCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee-CCEEEeecHHHHHHH
Q 030327           91 VLFMKGTKDFPQCGFSHTVVQILKS--LNAPFETVNILENEMLRQGLKEYSSWPTFPQLYI-EGEFFGGCDITVEAY  164 (179)
Q Consensus        91 vlysk~t~~~p~Cp~C~~ak~lL~~--~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI-dG~~IGG~del~~l~  164 (179)
                      .+|..     +.|++|.+++-+|..  .|++|+.++++.. ....++.+.....++|.+.. ||..+.....+.++.
T Consensus         2 ~Ly~~-----~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~yL   72 (73)
T cd03049           2 KLLYS-----PTSPYVRKVRVAAHETGLGDDVELVLVNPW-SDDESLLAVNPLGKIPALVLDDGEALFDSRVICEYL   72 (73)
T ss_pred             EEecC-----CCCcHHHHHHHHHHHhCCCCCcEEEEcCcc-cCChHHHHhCCCCCCCEEEECCCCEEECHHHHHhhh
Confidence            46666     489999999999999  8999999988642 11234556778889999985 788888887777654

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=97.81  E-value=0.00024  Score=50.67  Aligned_cols=62  Identities=18%  Similarity=0.343  Sum_probs=43.0

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHh------cCCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCEEEeec
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKS------LNAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEFFGGC  157 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~------~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~~IGG~  157 (179)
                      ..|+++..+    +||+.|+.+...|++      -++.+..+|+++++++.+    ..+...+|.+  |-||+.++..
T Consensus        14 ~~vlv~f~a----~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~----~~~v~~vPt~~i~~~g~~v~~~   83 (97)
T cd02949          14 RLILVLYTS----PTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAE----AAGIMGTPTVQFFKDKELVKEI   83 (97)
T ss_pred             CeEEEEEEC----CCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHH----HCCCeeccEEEEEECCeEEEEE
Confidence            345555554    699999999998866      246678888888776544    3456788877  4488776433

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=97.81  E-value=0.00013  Score=51.35  Aligned_cols=62  Identities=24%  Similarity=0.371  Sum_probs=43.2

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCEEEee
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEFFGG  156 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~~IGG  156 (179)
                      ...++|+...    +||+.|+.++..|.+.      ++.|..+|.+++.++    .+..+...+|.+  |-+|+.+..
T Consensus        17 ~~~vvv~f~~----~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l----~~~~~v~~~Pt~~~~~~g~~~~~   86 (103)
T PF00085_consen   17 DKPVVVYFYA----PWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKEL----CKKYGVKSVPTIIFFKNGKEVKR   86 (103)
T ss_dssp             SSEEEEEEES----TTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHH----HHHTTCSSSSEEEEEETTEEEEE
T ss_pred             CCCEEEEEeC----CCCCccccccceecccccccccccccchhhhhccchh----hhccCCCCCCEEEEEECCcEEEE
Confidence            4566666665    7999999999888543      366778888766443    344467778887  558876653

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.80  E-value=5.5e-05  Score=69.59  Aligned_cols=77  Identities=17%  Similarity=0.223  Sum_probs=59.7

Q ss_pred             ccCCHHHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcc
Q 030327           71 AALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFP  145 (179)
Q Consensus        71 ~~~~~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP  145 (179)
                      ..++++..+.++++-+.-.|.+|..     +.||||..+++.+++.     +|..+.+|..+.+++.+    .++..++|
T Consensus       101 ~~l~~~~~~~i~~~~~~~~i~~fv~-----~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~----~~~v~~VP  171 (517)
T PRK15317        101 PKLDQEVIEQIKALDGDFHFETYVS-----LSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVE----ARNIMAVP  171 (517)
T ss_pred             CCCCHHHHHHHHhcCCCeEEEEEEc-----CCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHH----hcCCcccC
Confidence            4567788888888888888999999     6999999999999776     35566666655555444    44777999


Q ss_pred             eEeeCCEEEee
Q 030327          146 QLYIEGEFFGG  156 (179)
Q Consensus       146 ~VfIdG~~IGG  156 (179)
                      .+|+||+.+..
T Consensus       172 ~~~i~~~~~~~  182 (517)
T PRK15317        172 TVFLNGEEFGQ  182 (517)
T ss_pred             EEEECCcEEEe
Confidence            99999987653

>TIGR02182 GRXB Glutaredoxin, GrxB family

Probab=97.80  E-value=8e-05  Score=60.62  Aligned_cols=68  Identities=18%  Similarity=0.206  Sum_probs=53.7

Q ss_pred             EEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEe-eCCEEEeecHHHHHHHHc
Q 030327           92 LFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLY-IEGEFFGGCDITVEAYKN  166 (179)
Q Consensus        92 lysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~Vf-IdG~~IGG~del~~l~~~  166 (179)
                      +|..     ..||+|.+++-+|..+|++|+.+++..++.. .. .+.++..++|++. .||..+++...+.++.++
T Consensus         2 Ly~~-----~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~~-~~-~~~np~g~vP~l~~~~g~~l~es~~I~~yL~~   70 (209)
T TIGR02182         2 LYIY-----DHCPFCVRARMIFGLKNIPVEKHVLLNDDEE-TP-IRMIGAKQVPILQKDDGRAMPESLDIVAYFDK   70 (209)
T ss_pred             eecC-----CCCChHHHHHHHHHHcCCCeEEEECCCCcch-hH-HHhcCCCCcceEEeeCCeEeccHHHHHHHHHH
Confidence            5665     3799999999999999999999988654322 22 4556778999997 788899999988887654

This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=97.80  E-value=0.00023  Score=51.63  Aligned_cols=64  Identities=27%  Similarity=0.247  Sum_probs=44.1

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCEEEe
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEFFG  155 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~~IG  155 (179)
                      ...|+|+...    +||+.|+.....|+++     ++.|..+|++++++.. .+.+..+...+|++  |.||+.++
T Consensus        15 ~k~vvv~F~a----~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~-~l~~~~~V~~~Pt~~~~~~G~~v~   85 (103)
T cd02985          15 GRLVVLEFAL----KHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTM-ELCRREKIIEVPHFLFYKDGEKIH   85 (103)
T ss_pred             CCEEEEEEEC----CCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHH-HHHHHcCCCcCCEEEEEeCCeEEE
Confidence            3456666655    6999999998888653     4668888888775443 34444577778866  55887664

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs

Probab=97.79  E-value=0.00016  Score=49.90  Aligned_cols=70  Identities=11%  Similarity=0.094  Sum_probs=55.4

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcC--CCHHHHHHHHHhcCCCCcceEeeC---CEEEeecHHHHHHH
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNIL--ENEMLRQGLKEYSSWPTFPQLYIE---GEFFGGCDITVEAY  164 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~--~d~~~~~~L~~~sg~~tvP~VfId---G~~IGG~del~~l~  164 (179)
                      +.+|..     +. ++|.+++-+|...|++|+.+.++  .+....+++.+.+...++|.+..+   |..+.....+.++.
T Consensus         2 ~~Ly~~-----~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL   75 (81)
T cd03048           2 ITLYTH-----GT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYL   75 (81)
T ss_pred             eEEEeC-----CC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHH
Confidence            567876     34 99999999999999999988775  333445667778888899999887   78888888877765


Q ss_pred             H
Q 030327          165 K  165 (179)
Q Consensus       165 ~  165 (179)
                      .
T Consensus        76 ~   76 (81)
T cd03048          76 A   76 (81)
T ss_pred             H
Confidence            4

Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and

>PRK10387 glutaredoxin 2; Provisional

Probab=97.78  E-value=0.00011  Score=58.81  Aligned_cols=69  Identities=16%  Similarity=0.209  Sum_probs=54.2

Q ss_pred             EEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceE-eeCCEEEeecHHHHHHHHc
Q 030327           91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQL-YIEGEFFGGCDITVEAYKN  166 (179)
Q Consensus        91 vlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V-fIdG~~IGG~del~~l~~~  166 (179)
                      .+|+.     +.||+|.+++-+|+.+|++|+.++++..+.. .. .+..+..++|++ ..||..+.+...+.++.++
T Consensus         2 ~Ly~~-----~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~-~~-~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~   71 (210)
T PRK10387          2 KLYIY-----DHCPFCVKARMIFGLKNIPVELIVLANDDEA-TP-IRMIGQKQVPILQKDDGSYMPESLDIVHYIDE   71 (210)
T ss_pred             EEEeC-----CCCchHHHHHHHHHHcCCCeEEEEcCCCchh-hH-HHhcCCcccceEEecCCeEecCHHHHHHHHHH
Confidence            57877     3899999999999999999999998644322 22 345677899999 5688899999888887654

>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor

Probab=97.77  E-value=9.1e-05  Score=51.64  Aligned_cols=65  Identities=15%  Similarity=0.083  Sum_probs=51.5

Q ss_pred             CCCchHHHHHHHHHhcCCCeEEEEcCCC--HHHHHHHHHhcCCCCcceEeeC-CEEEeecHHHHHHHHc
Q 030327          101 PQCGFSHTVVQILKSLNAPFETVNILEN--EMLRQGLKEYSSWPTFPQLYIE-GEFFGGCDITVEAYKN  166 (179)
Q Consensus       101 p~Cp~C~~ak~lL~~~gv~y~~vdV~~d--~~~~~~L~~~sg~~tvP~VfId-G~~IGG~del~~l~~~  166 (179)
                      ++|++|.+++-+|...|++|+.++++..  .....++ +..+..++|.+..| |..+.+...+.++.++
T Consensus        14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~yL~~   81 (84)
T cd03038          14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAEYLEE   81 (84)
T ss_pred             CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCceeCeEEECCCCEEeCHHHHHHHHHH
Confidence            5899999999999999999998877532  2333444 56678899999888 8999998888887543

This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.74  E-value=8.2e-05  Score=68.45  Aligned_cols=77  Identities=14%  Similarity=0.179  Sum_probs=58.1

Q ss_pred             ccCCHHHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcC-----CCeEEEEcCCCHHHHHHHHHhcCCCCcc
Q 030327           71 AALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLN-----APFETVNILENEMLRQGLKEYSSWPTFP  145 (179)
Q Consensus        71 ~~~~~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~g-----v~y~~vdV~~d~~~~~~L~~~sg~~tvP  145 (179)
                      ..++++..++++++-..-.|.+|..     +.||||..+++.++++.     |..+.+|..+.+++    .+.++..+||
T Consensus       102 ~~l~~~~~~~~~~~~~~~~i~~f~~-----~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~----~~~~~v~~VP  172 (515)
T TIGR03140       102 PKLDEGIIDRIRRLNGPLHFETYVS-----LTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDE----VEALGIQGVP  172 (515)
T ss_pred             CCCCHHHHHHHHhcCCCeEEEEEEe-----CCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHH----HHhcCCcccC
Confidence            4567788888888877888999999     59999999999998764     44555555444443    3445777999


Q ss_pred             eEeeCCEEEee
Q 030327          146 QLYIEGEFFGG  156 (179)
Q Consensus       146 ~VfIdG~~IGG  156 (179)
                      ++|+||+.++.
T Consensus       173 ~~~i~~~~~~~  183 (515)
T TIGR03140       173 AVFLNGEEFHN  183 (515)
T ss_pred             EEEECCcEEEe
Confidence            99999987754

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=97.71  E-value=0.00042  Score=46.74  Aligned_cols=60  Identities=22%  Similarity=0.363  Sum_probs=43.2

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHh-----cCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CCEEEe
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKS-----LNAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEFFG  155 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~-----~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG~~IG  155 (179)
                      ..++|+..+    +||++|..+.+.|++     .++.+..+|++.+.++.+.    .+...+|.+++  +|+.++
T Consensus        11 ~~~ll~~~~----~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~v~~~P~~~~~~~g~~~~   77 (93)
T cd02947          11 KPVVVDFWA----PWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEE----YGVRSIPTFLFFKNGKEVD   77 (93)
T ss_pred             CcEEEEEEC----CCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHh----cCcccccEEEEEECCEEEE
Confidence            444444443    699999999999987     6788899999876665443    35667888755  887544

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=97.70  E-value=0.00013  Score=44.76  Aligned_cols=55  Identities=27%  Similarity=0.437  Sum_probs=42.6

Q ss_pred             EEEEeeCCCCCCCchHHHHHHHHH-----hcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCC
Q 030327           91 VLFMKGTKDFPQCGFSHTVVQILK-----SLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEG  151 (179)
Q Consensus        91 vlysk~t~~~p~Cp~C~~ak~lL~-----~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG  151 (179)
                      ++|...     +|++|.++...++     ..++.+..+|++......+.. ...+...+|.+++.+
T Consensus         2 ~~~~~~-----~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~P~~~~~~   61 (69)
T cd01659           2 VLFYAP-----WCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKEL-KRYGVGGVPTLVVFG   61 (69)
T ss_pred             EEEECC-----CChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHH-HhCCCccccEEEEEe
Confidence            456663     9999999999999     567889999998877665542 335778899998766

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B

Probab=97.67  E-value=7.4e-05  Score=50.79  Aligned_cols=65  Identities=17%  Similarity=0.172  Sum_probs=51.0

Q ss_pred             CCchHHHHHHHHHhcCCCeEEEEcCC---CHHHHHHHHHhcCCCCcceEee-CCEEEeecHHHHHHHHc
Q 030327          102 QCGFSHTVVQILKSLNAPFETVNILE---NEMLRQGLKEYSSWPTFPQLYI-EGEFFGGCDITVEAYKN  166 (179)
Q Consensus       102 ~Cp~C~~ak~lL~~~gv~y~~vdV~~---d~~~~~~L~~~sg~~tvP~VfI-dG~~IGG~del~~l~~~  166 (179)
                      .||||.++.-+|..+|++|+...+..   +.....++.++++..++|.+.. +|+.++....+.++.++
T Consensus         1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~~   69 (70)
T PF13409_consen    1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLEE   69 (70)
T ss_dssp             T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHHH
T ss_pred             CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHhc
Confidence            49999999999999999998766622   2222356788889999999998 89999999998887654

...

>PRK09381 trxA thioredoxin; Provisional

Probab=97.65  E-value=0.00034  Score=50.65  Aligned_cols=63  Identities=17%  Similarity=0.239  Sum_probs=43.7

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCEEEeec
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEFFGGC  157 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~~IGG~  157 (179)
                      ...++|+...    +||+.|+.+...|+++      ++.+..+|++.++.+.    ...+..++|.+  |-+|+.++.+
T Consensus        21 ~~~vvv~f~~----~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~----~~~~v~~~Pt~~~~~~G~~~~~~   91 (109)
T PRK09381         21 DGAILVDFWA----EWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA----PKYGIRGIPTLLLFKNGEVAATK   91 (109)
T ss_pred             CCeEEEEEEC----CCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHH----HhCCCCcCCEEEEEeCCeEEEEe
Confidence            4445555554    6999999998877642      3567788887776553    33477789987  4488877544

>TIGR01068 thioredoxin thioredoxin

Probab=97.64  E-value=0.00076  Score=47.05  Aligned_cols=60  Identities=23%  Similarity=0.374  Sum_probs=42.2

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CCEEEee
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEFFGG  156 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG~~IGG  156 (179)
                      .|+||...    +||++|+.+...|++.      ++.+-.+|.+.++++.    +..|...+|.+++  +|+.+..
T Consensus        16 ~vvi~f~~----~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~----~~~~v~~~P~~~~~~~g~~~~~   83 (101)
T TIGR01068        16 PVLVDFWA----PWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIA----AKYGIRSIPTLLLFKNGKEVDR   83 (101)
T ss_pred             cEEEEEEC----CCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHH----HHcCCCcCCEEEEEeCCcEeee
Confidence            56666665    7999999998877553      3667788887776543    3457788998855  7765543

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase

Probab=97.62  E-value=0.00039  Score=47.35  Aligned_cols=70  Identities=19%  Similarity=0.152  Sum_probs=55.2

Q ss_pred             EEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCC--CHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327           91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE--NEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        91 vlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~--d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      .+|..     +.+++|+++.-+|...|++|+.+.++.  .+...+++.+.....++|.+..+|..+.....+.++..
T Consensus         2 ~ly~~-----~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Yl~   73 (76)
T cd03050           2 KLYYD-----LMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRYLA   73 (76)
T ss_pred             EEeeC-----CCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHHH
Confidence            46776     489999999999999999999888753  22233467777788999999989988888877777654

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC

>PTZ00051 thioredoxin; Provisional

Probab=97.61  E-value=0.00036  Score=49.27  Aligned_cols=70  Identities=13%  Similarity=0.285  Sum_probs=44.4

Q ss_pred             HHHhhhcCCc-EEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCC
Q 030327           80 TLDKVVTGNK-VVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEG  151 (179)
Q Consensus        80 ~l~~li~~~~-Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG  151 (179)
                      .++++++.++ ++++...    +||+.|+.+...|.+.     ++.|..+|++++..+.+    ..+...+|.+  |-+|
T Consensus        10 ~~~~~~~~~~~vli~f~~----~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~----~~~v~~~Pt~~~~~~g   81 (98)
T PTZ00051         10 EFESTLSQNELVIVDFYA----EWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAE----KENITSMPTFKVFKNG   81 (98)
T ss_pred             HHHHHHhcCCeEEEEEEC----CCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHH----HCCCceeeEEEEEeCC
Confidence            3445555544 4444444    6999999998888663     46677778766554433    3355667765  5588


Q ss_pred             EEEeec
Q 030327          152 EFFGGC  157 (179)
Q Consensus       152 ~~IGG~  157 (179)
                      +.++.+
T Consensus        82 ~~~~~~   87 (98)
T PTZ00051         82 SVVDTL   87 (98)
T ss_pred             eEEEEE
Confidence            766543

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=97.60  E-value=0.00049  Score=55.24  Aligned_cols=79  Identities=20%  Similarity=0.283  Sum_probs=50.6

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCEEEeecHHHH
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEFFGGCDITV  161 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~~IGG~del~  161 (179)
                      .|+|+...    +||+.|+.+...|.++     ++.|..||++..     .+....+-..+|.+  |.||+.++..--+.
T Consensus        85 ~VVV~Fya----~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-----~l~~~f~v~~vPTlllyk~G~~v~~~vG~~  155 (175)
T cd02987          85 TVVVHIYE----PGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-----GASDEFDTDALPALLVYKGGELIGNFVRVT  155 (175)
T ss_pred             EEEEEEEC----CCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-----hhHHhCCCCCCCEEEEEECCEEEEEEechH
Confidence            57776665    7999999888877554     356777777643     45555677788866  77999886443222


Q ss_pred             HH----HHcccHHHHHHhh
Q 030327          162 EA----YKNGELQELLEKA  176 (179)
Q Consensus       162 ~l----~~~GeL~~~L~~a  176 (179)
                      ++    .....|+.+|...
T Consensus       156 ~~~g~~f~~~~le~~L~~~  174 (175)
T cd02987         156 EDLGEDFDAEDLESFLVEY  174 (175)
T ss_pred             HhcCCCCCHHHHHHHHHhc
Confidence            22    2234555555543

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.58  E-value=0.00016  Score=62.84  Aligned_cols=74  Identities=16%  Similarity=0.289  Sum_probs=57.2

Q ss_pred             HHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--
Q 030327           76 ELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQL--  147 (179)
Q Consensus        76 ~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--  147 (179)
                      ..+..+-+-....+|+++...    |||+.|+.....|.+.      ++.+..+|+|.++.+...+    |-.++|.|  
T Consensus        32 nfe~~V~~~S~~~PVlV~fWa----p~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqf----giqsIPtV~a  103 (304)
T COG3118          32 NFEQEVIQSSREVPVLVDFWA----PWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQF----GVQSIPTVYA  103 (304)
T ss_pred             HHHHHHHHHccCCCeEEEecC----CCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHh----CcCcCCeEEE
Confidence            445555556666678887776    8999999999999765      3567888999888875554    66689988  


Q ss_pred             eeCCEEEeec
Q 030327          148 YIEGEFFGGC  157 (179)
Q Consensus       148 fIdG~~IGG~  157 (179)
                      |+||+.|-||
T Consensus       104 f~dGqpVdgF  113 (304)
T COG3118         104 FKDGQPVDGF  113 (304)
T ss_pred             eeCCcCcccc
Confidence            8899999876

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.58  E-value=0.00019  Score=66.71  Aligned_cols=75  Identities=15%  Similarity=0.231  Sum_probs=57.9

Q ss_pred             ccCCHHHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcc
Q 030327           71 AALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFP  145 (179)
Q Consensus        71 ~~~~~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP  145 (179)
                      ..++++..++++++-..-.|.+|..     ++||+|.++.+.+++.     +|..+.+|+.+.+++.+    .++..++|
T Consensus       461 ~~l~~~~~~~i~~~~~~~~i~v~~~-----~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~----~~~v~~vP  531 (555)
T TIGR03143       461 QPLGEELLEKIKKITKPVNIKIGVS-----LSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKD----EYGIMSVP  531 (555)
T ss_pred             CCCCHHHHHHHHhcCCCeEEEEEEC-----CCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHH----hCCceecC
Confidence            4557777888887767778999887     5999999988876543     68899999977765443    45777999


Q ss_pred             eEeeCCEEE
Q 030327          146 QLYIEGEFF  154 (179)
Q Consensus       146 ~VfIdG~~I  154 (179)
                      .++|||+.+
T Consensus       532 ~~~i~~~~~  540 (555)
T TIGR03143       532 AIVVDDQQV  540 (555)
T ss_pred             EEEECCEEE
Confidence            999999643

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK10996 thioredoxin 2; Provisional

Probab=97.56  E-value=0.00033  Score=53.87  Aligned_cols=67  Identities=22%  Similarity=0.376  Sum_probs=42.8

Q ss_pred             HHhhhcC-CcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCC
Q 030327           81 LDKVVTG-NKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEG  151 (179)
Q Consensus        81 l~~li~~-~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG  151 (179)
                      ++++++. ..|+|+...    +||++|+.....|.+.      ++.+..+|+++++++.+    ..+..++|.+  |-+|
T Consensus        45 ~~~~i~~~k~vvv~F~a----~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~----~~~V~~~Ptlii~~~G  116 (139)
T PRK10996         45 LDKLLQDDLPVVIDFWA----PWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSA----RFRIRSIPTIMIFKNG  116 (139)
T ss_pred             HHHHHhCCCeEEEEEEC----CCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHH----hcCCCccCEEEEEECC
Confidence            4444443 445555554    7999999988777553      34566777777766543    3456677766  5588


Q ss_pred             EEEe
Q 030327          152 EFFG  155 (179)
Q Consensus       152 ~~IG  155 (179)
                      +.+.
T Consensus       117 ~~v~  120 (139)
T PRK10996        117 QVVD  120 (139)
T ss_pred             EEEE
Confidence            8664

>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]

Probab=97.54  E-value=0.00012  Score=55.46  Aligned_cols=43  Identities=16%  Similarity=0.382  Sum_probs=35.6

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHH
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLK  136 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~  136 (179)
                      -|++|..     |.|.-|++|++||+++|++|+++|+.+++.-+++|+
T Consensus         2 ~itiy~~-----p~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~   44 (117)
T COG1393           2 MITIYGN-----PNCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELK   44 (117)
T ss_pred             eEEEEeC-----CCChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHH
Confidence            3789999     699999999999999999999999987644444333

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=97.54  E-value=0.00048  Score=49.10  Aligned_cols=63  Identities=16%  Similarity=0.279  Sum_probs=42.3

Q ss_pred             HHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc-------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CC
Q 030327           81 LDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EG  151 (179)
Q Consensus        81 l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG  151 (179)
                      ++++++...++.|..     +||++|+.....+++.       ++.+..+|+++++.+.    ...+..++|.+++  +|
T Consensus        11 f~~~~~~~~lv~f~a-----~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~----~~~~i~~~Pt~~~~~~g   81 (101)
T cd02994          11 WTLVLEGEWMIEFYA-----PWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLS----GRFFVTALPTIYHAKDG   81 (101)
T ss_pred             HHHHhCCCEEEEEEC-----CCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHH----HHcCCcccCEEEEeCCC
Confidence            445566665555555     6999999998887543       3567788887776543    3346667887754  66


Q ss_pred             E
Q 030327          152 E  152 (179)
Q Consensus       152 ~  152 (179)
                      +
T Consensus        82 ~   82 (101)
T cd02994          82 V   82 (101)
T ss_pred             C
Confidence            4

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=97.53  E-value=0.00037  Score=52.75  Aligned_cols=72  Identities=15%  Similarity=0.205  Sum_probs=46.9

Q ss_pred             HHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc-----C-CCeEEEEcCCCHHHHHHHHHhcCCCCcceEee
Q 030327           76 ELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----N-APFETVNILENEMLRQGLKEYSSWPTFPQLYI  149 (179)
Q Consensus        76 ~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----g-v~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI  149 (179)
                      +..+.+.+. ....|||-...    .||+.|+.+-.+|.++     + +.+-.+|+++.+++.+.+.- ..-|++ ++|.
T Consensus         4 ~~d~~i~~~-~~klVVVdF~a----~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I-~amPtf-vffk   76 (114)
T cd02986           4 EVDQAIKST-AEKVLVLRFGR----DEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDI-SYIPST-IFFF   76 (114)
T ss_pred             HHHHHHHhc-CCCEEEEEEeC----CCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCc-eeCcEE-EEEE
Confidence            334444433 33444444443    5999999999999776     3 55888999988887666442 223444 2688


Q ss_pred             CCEEE
Q 030327          150 EGEFF  154 (179)
Q Consensus       150 dG~~I  154 (179)
                      ||+|+
T Consensus        77 ngkh~   81 (114)
T cd02986          77 NGQHM   81 (114)
T ss_pred             CCcEE
Confidence            99998

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>TIGR00862 O-ClC intracellular chloride channel protein

Probab=97.51  E-value=0.00063  Score=57.27  Aligned_cols=77  Identities=18%  Similarity=0.224  Sum_probs=60.8

Q ss_pred             cEEEEEeeC---CCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327           89 KVVLFMKGT---KDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        89 ~Vvlysk~t---~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      .|.+|.|..   ...+.||+|++++-.|..+|++|+.++|+-... .+++.++.-..++|++..+|..+.....+.++.+
T Consensus         2 ~~el~~ka~~~~~~~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~-~~~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~   80 (236)
T TIGR00862         2 EIELFVKAGSDGESIGNCPFSQRLFMILWLKGVVFNVTTVDLKRK-PEDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLE   80 (236)
T ss_pred             ceEEEEecCCCCCcCCCCHhHHHHHHHHHHcCCCcEEEEECCCCC-CHHHHHHCcCCCCCEEEECCEEeecHHHHHHHHH
Confidence            356676652   234689999999999999999999988864321 3567778778899999999999999988888766


Q ss_pred             c
Q 030327          166 N  166 (179)
Q Consensus       166 ~  166 (179)
                      +
T Consensus        81 e   81 (236)
T TIGR00862        81 E   81 (236)
T ss_pred             H
Confidence            4

These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.

>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis

Probab=97.49  E-value=0.00054  Score=46.74  Aligned_cols=69  Identities=12%  Similarity=-0.001  Sum_probs=54.1

Q ss_pred             EEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCH-HHHHHHHHhcCCCCcceEeeC-CEEEeecHHHHHHHH
Q 030327           92 LFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENE-MLRQGLKEYSSWPTFPQLYIE-GEFFGGCDITVEAYK  165 (179)
Q Consensus        92 lysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~-~~~~~L~~~sg~~tvP~VfId-G~~IGG~del~~l~~  165 (179)
                      +|+.     +.|++|.+++-+|...|++|+.++++... ...+++++.+...++|.+..+ |..+.....+.++..
T Consensus         3 Ly~~-----~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~yL~   73 (75)
T cd03044           3 LYTY-----PGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYYVA   73 (75)
T ss_pred             EecC-----CCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHHHh
Confidence            5655     58999999999999999999999886432 233567777888999999984 888877777776653

EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=97.48  E-value=0.00056  Score=56.07  Aligned_cols=70  Identities=21%  Similarity=0.282  Sum_probs=43.8

Q ss_pred             HHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CCEE
Q 030327           81 LDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEF  153 (179)
Q Consensus        81 l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG~~  153 (179)
                      ++.+.+.-.|++|..  ++++||++|+.+..+|++.     ++++..++++.+.  ...+.+..|-..+|.+.+  ||+.
T Consensus        14 ~~~~~~~~~i~~f~~--~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~--~~~l~~~~~V~~~Pt~~~f~~g~~   89 (215)
T TIGR02187        14 LKELKNPVEIVVFTD--NDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPE--DKEEAEKYGVERVPTTIILEEGKD   89 (215)
T ss_pred             HHhcCCCeEEEEEcC--CCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcc--cHHHHHHcCCCccCEEEEEeCCee
Confidence            333444445666666  4557999999999999765     2445677776332  123444456778888744  6554


Q ss_pred             E
Q 030327          154 F  154 (179)
Q Consensus       154 I  154 (179)
                      +
T Consensus        90 ~   90 (215)
T TIGR02187        90 G   90 (215)
T ss_pred             e
Confidence            4

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=97.47  E-value=0.00033  Score=52.07  Aligned_cols=69  Identities=12%  Similarity=0.238  Sum_probs=42.5

Q ss_pred             HHHHhhhcCC--cEEEEEeeCCCCCCCchHHHHHHHHH-------hc--CCCeEEEEcCCCHHH---------HHHHHHh
Q 030327           79 STLDKVVTGN--KVVLFMKGTKDFPQCGFSHTVVQILK-------SL--NAPFETVNILENEML---------RQGLKEY  138 (179)
Q Consensus        79 ~~l~~li~~~--~Vvlysk~t~~~p~Cp~C~~ak~lL~-------~~--gv~y~~vdV~~d~~~---------~~~L~~~  138 (179)
                      +.++++.+++  +|+|+...    +||++|++....+.       .+  ++.+..+|++++...         ...+...
T Consensus         4 ~~~~~a~~~~~k~vlv~f~a----~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~   79 (125)
T cd02951           4 EDLAEAAADGKKPLLLLFSQ----PGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARK   79 (125)
T ss_pred             HHHHHHHHcCCCcEEEEEeC----CCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHH
Confidence            3455566666  45555554    79999999876542       11  345566777655321         2455566


Q ss_pred             cCCCCcceE-eeCC
Q 030327          139 SSWPTFPQL-YIEG  151 (179)
Q Consensus       139 sg~~tvP~V-fIdG  151 (179)
                      .+...+|.+ |+++
T Consensus        80 ~~v~~~Pt~~~~~~   93 (125)
T cd02951          80 YRVRFTPTVIFLDP   93 (125)
T ss_pred             cCCccccEEEEEcC
Confidence            678899996 5553

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.44  E-value=0.00048  Score=48.68  Aligned_cols=61  Identities=26%  Similarity=0.386  Sum_probs=44.8

Q ss_pred             EEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC-HHHHHHHHH-----------hcCCCCcceEeeC-CEEEee
Q 030327           91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN-EMLRQGLKE-----------YSSWPTFPQLYIE-GEFFGG  156 (179)
Q Consensus        91 vlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d-~~~~~~L~~-----------~sg~~tvP~VfId-G~~IGG  156 (179)
                      ++|+..     -||.|..+++.|++++++|++|||.+. +.+++.|.-           -.|+-.+|.+.++ |+.|-|
T Consensus         5 ~lfgsn-----~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl~   78 (85)
T COG4545           5 KLFGSN-----LCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVLG   78 (85)
T ss_pred             eeeccc-----cCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEEe
Confidence            677774     899999999999999999999999754 233332221           1378889999775 555555

>PRK09481 sspA stringent starvation protein A; Provisional

Probab=97.44  E-value=0.00063  Score=55.11  Aligned_cols=71  Identities=21%  Similarity=0.249  Sum_probs=57.8

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      .+.+|+.     +.|++|.+++-+|.+.|++|+.+.|+-. ...+++.+++-..++|.+..||..+-....+.++..
T Consensus        10 ~~~Ly~~-----~~s~~~~rv~~~L~e~gl~~e~~~v~~~-~~~~~~~~~nP~g~VPvL~~~g~~l~ES~AIl~YL~   80 (211)
T PRK09481         10 VMTLFSG-----PTDIYSHQVRIVLAEKGVSVEIEQVEKD-NLPQDLIDLNPYQSVPTLVDRELTLYESRIIMEYLD   80 (211)
T ss_pred             eeEEeCC-----CCChhHHHHHHHHHHCCCCCEEEeCCcc-cCCHHHHHhCCCCCCCEEEECCEEeeCHHHHHHHHH
Confidence            4789998     4899999999999999999999988643 223467777778899999999988888777776543

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=97.43  E-value=8.9e-05  Score=56.90  Aligned_cols=79  Identities=18%  Similarity=0.262  Sum_probs=48.9

Q ss_pred             CCHHHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE
Q 030327           73 LTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQL  147 (179)
Q Consensus        73 ~~~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V  147 (179)
                      .+++..+.++.+-+...+++++.+     |||+|.....+|.+.     ++++..+..+++.++.+.+.. .|...+|.+
T Consensus        28 l~~~~~~~l~~~~~~~~ilvi~e~-----WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt-~g~~~IP~~  101 (129)
T PF14595_consen   28 LSEEQIEKLKSIQKPYNILVITET-----WCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLT-NGGRSIPTF  101 (129)
T ss_dssp             --HHHHHHHHT--S-EEEEEE--T-----T-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT--SS--SSEE
T ss_pred             CCHHHHHHHHhcCCCcEEEEEECC-----CchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHh-CCCeecCEE
Confidence            456677788888888899999994     999999988877554     677888877777776665555 588999998


Q ss_pred             ee---CCEEEeec
Q 030327          148 YI---EGEFFGGC  157 (179)
Q Consensus       148 fI---dG~~IGG~  157 (179)
                      ++   +|+.+|-+
T Consensus       102 I~~d~~~~~lg~w  114 (129)
T PF14595_consen  102 IFLDKDGKELGRW  114 (129)
T ss_dssp             EEE-TT--EEEEE
T ss_pred             EEEcCCCCEeEEE
Confidence            55   35655543

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=97.43  E-value=0.0027  Score=45.86  Aligned_cols=65  Identities=18%  Similarity=0.252  Sum_probs=40.2

Q ss_pred             HHhhhcCC-cEEEEEeeCCCCCCCchHHHHHHHHHhc----C---CCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeC
Q 030327           81 LDKVVTGN-KVVLFMKGTKDFPQCGFSHTVVQILKSL----N---APFETVNILENEMLRQGLKEYSSWPTFPQL--YIE  150 (179)
Q Consensus        81 l~~li~~~-~Vvlysk~t~~~p~Cp~C~~ak~lL~~~----g---v~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fId  150 (179)
                      ++++++++ .|+|+...    +||+.|+.....|.+.    +   +.+..+|++ +++    +.+..+...+|.+  |-|
T Consensus        10 ~~~~i~~~~~vvv~F~a----~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~----~~~~~~v~~~Pt~~~~~~   80 (102)
T cd02948          10 WEELLSNKGLTVVDVYQ----EWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TID----TLKRYRGKCEPTFLFYKN   80 (102)
T ss_pred             HHHHHccCCeEEEEEEC----CcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHH----HHHHcCCCcCcEEEEEEC
Confidence            44444444 45555554    7999999998888543    2   345566666 333    3344467778855  668


Q ss_pred             CEEE
Q 030327          151 GEFF  154 (179)
Q Consensus       151 G~~I  154 (179)
                      |+.+
T Consensus        81 g~~~   84 (102)
T cd02948          81 GELV   84 (102)
T ss_pred             CEEE
Confidence            8754

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=97.43  E-value=0.0012  Score=48.50  Aligned_cols=62  Identities=15%  Similarity=0.126  Sum_probs=42.0

Q ss_pred             cCCcEEEEEeeCCCCCCCchHHHHHHHHHhc-------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCEEEe
Q 030327           86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEFFG  155 (179)
Q Consensus        86 ~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~~IG  155 (179)
                      ....++|+...    +||+.|+.....+.+.       ++.+..+|++.++.+.    ...|..++|.+  |.+|+.++
T Consensus        23 ~~~~vlV~F~a----~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~----~~~~V~~~Pt~~i~~~g~~~~   93 (111)
T cd02963          23 FKKPYLIKITS----DWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLA----RKLGAHSVPAIVGIINGQVTF   93 (111)
T ss_pred             CCCeEEEEEEC----CccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHH----HHcCCccCCEEEEEECCEEEE
Confidence            34556666665    7999999887766332       4667788887766543    33467788877  56887664

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs

Probab=97.43  E-value=0.0009  Score=45.24  Aligned_cols=68  Identities=10%  Similarity=0.084  Sum_probs=53.8

Q ss_pred             EEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC--HHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHH
Q 030327           91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN--EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEA  163 (179)
Q Consensus        91 vlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d--~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l  163 (179)
                      .+|..     +.+++|.+++-+|.+.|++|+.++++..  +...+.+.+.+...++|.+..+|..+.....+.++
T Consensus         2 ~l~~~-----~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~Y   71 (73)
T cd03047           2 TIWGR-----RSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILRY   71 (73)
T ss_pred             EEEec-----CCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEECCEEEECHHHHHHH
Confidence            46666     4899999999999999999998887532  23345677777888999999999888877776665

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.

>TIGR01616 nitro_assoc nitrogenase-associated protein

Probab=97.41  E-value=0.00025  Score=54.33  Aligned_cols=35  Identities=23%  Similarity=0.433  Sum_probs=31.7

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN  128 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d  128 (179)
                      .+++|..     |.|.-|++++++|+++|++|+++|+.++
T Consensus         2 ~i~iY~~-----p~Cst~RKA~~~L~~~gi~~~~~d~~~~   36 (126)
T TIGR01616         2 TIIFYEK-----PGCANNARQKAALKASGHDVEVQDILKE   36 (126)
T ss_pred             eEEEEeC-----CCCHHHHHHHHHHHHCCCCcEEEeccCC
Confidence            4789999     6999999999999999999999998654

This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=97.38  E-value=0.0011  Score=52.34  Aligned_cols=65  Identities=9%  Similarity=0.084  Sum_probs=43.3

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhc-------CCCeEEEEcCCCHHHHHHHHHhc--CCCCcceE--eeCCEEEeec
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNILENEMLRQGLKEYS--SWPTFPQL--YIEGEFFGGC  157 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-------gv~y~~vdV~~d~~~~~~L~~~s--g~~tvP~V--fIdG~~IGG~  157 (179)
                      .++|+...    +||+.|+.+...|++.       ++.+-.+|+++++++.+.+.-.+  |..++|++  |.||+.++..
T Consensus        49 ~vvV~Fya----~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~r~  124 (152)
T cd02962          49 TWLVEFFT----TWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGGKEVARR  124 (152)
T ss_pred             EEEEEEEC----CCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEECCEEEEEE
Confidence            34444443    6999999998877443       36678899998887766654321  12336655  7899888543

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=97.36  E-value=0.0012  Score=49.15  Aligned_cols=71  Identities=23%  Similarity=0.303  Sum_probs=45.6

Q ss_pred             HHHHHHhhhcC-CcEEEEEeeCCCCCCCchHHHHHHHHHhcC-----CCeEEEEcCCCHHHHHHHHHhcCCCCcceE--e
Q 030327           77 LKSTLDKVVTG-NKVVLFMKGTKDFPQCGFSHTVVQILKSLN-----APFETVNILENEMLRQGLKEYSSWPTFPQL--Y  148 (179)
Q Consensus        77 ~~~~l~~li~~-~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~g-----v~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--f  148 (179)
                      ........-.. ..||++..+    +||+.|+.+...+.++-     +.|-.+|++++.    .+....+-..+|.+  +
T Consensus        10 ~~~~~~~~~~~~kliVvdF~a----~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~----~~~~~~~V~~~PTf~f~   81 (106)
T KOG0907|consen   10 LDLVLSAAEAGDKLVVVDFYA----TWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELE----EVAKEFNVKAMPTFVFY   81 (106)
T ss_pred             HHHHHHHhhCCCCeEEEEEEC----CCCcchhhhhhHHHHHHHHCCCCEEEEEecccCH----hHHHhcCceEeeEEEEE
Confidence            34444444444 446666665    69999999999997763     446778887733    33333466678877  5


Q ss_pred             eCCEEEe
Q 030327          149 IEGEFFG  155 (179)
Q Consensus       149 IdG~~IG  155 (179)
                      .||+.++
T Consensus        82 k~g~~~~   88 (106)
T KOG0907|consen   82 KGGEEVD   88 (106)
T ss_pred             ECCEEEE
Confidence            5775543

>PRK10853 putative reductase; Provisional

Probab=97.35  E-value=0.00028  Score=53.42  Aligned_cols=35  Identities=11%  Similarity=0.162  Sum_probs=31.7

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCH
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENE  129 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~  129 (179)
                      |++|..     |.|.-|++|+++|+++|++|+++|+.+++
T Consensus         2 i~iy~~-----~~C~t~rkA~~~L~~~~i~~~~~d~~k~p   36 (118)
T PRK10853          2 VTLYGI-----KNCDTIKKARRWLEAQGIDYRFHDYRVDG   36 (118)
T ss_pred             EEEEcC-----CCCHHHHHHHHHHHHcCCCcEEeehccCC
Confidence            678999     69999999999999999999999987653

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=97.35  E-value=0.0014  Score=45.99  Aligned_cols=60  Identities=17%  Similarity=0.252  Sum_probs=38.1

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCEEEe
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEFFG  155 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~~IG  155 (179)
                      ..|+|+...    +||+.|+++...|++.      ++.+..+|.++.+++    .+..+...+|.+  |.+|+.++
T Consensus        15 ~~v~v~f~~----~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~----~~~~~i~~~Pt~~~~~~g~~~~   82 (97)
T cd02984          15 KLLVLHFWA----PWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEI----SEKFEITAVPTFVFFRNGTIVD   82 (97)
T ss_pred             CEEEEEEEC----CCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHH----HHhcCCccccEEEEEECCEEEE
Confidence            345444444    6999999999988653      344555666555443    344466678865  66887653

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>PRK10026 arsenate reductase; Provisional

Probab=97.30  E-value=0.00042  Score=54.19  Aligned_cols=37  Identities=16%  Similarity=0.508  Sum_probs=33.2

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCH
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENE  129 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~  129 (179)
                      ..|.||..     |.|.-|+++++||+++|++|+++|+.+++
T Consensus         2 ~~i~iY~~-----p~Cst~RKA~~wL~~~gi~~~~~d~~~~p   38 (141)
T PRK10026          2 SNITIYHN-----PACGTSRNTLEMIRNSGTEPTIIHYLETP   38 (141)
T ss_pred             CEEEEEeC-----CCCHHHHHHHHHHHHCCCCcEEEeeeCCC
Confidence            35889999     69999999999999999999999997653

>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli

Probab=97.30  E-value=0.00035  Score=52.07  Aligned_cols=34  Identities=21%  Similarity=0.469  Sum_probs=30.9

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN  128 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d  128 (179)
                      |++|..     |.|.-|++++++|++.|++|+++|+.++
T Consensus         1 i~iy~~-----~~C~t~rkA~~~L~~~~i~~~~~di~~~   34 (112)
T cd03034           1 ITIYHN-----PRCSKSRNALALLEEAGIEPEIVEYLKT   34 (112)
T ss_pred             CEEEEC-----CCCHHHHHHHHHHHHCCCCeEEEecccC
Confidence            468888     5999999999999999999999999665

E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=97.29  E-value=0.00082  Score=48.43  Aligned_cols=63  Identities=10%  Similarity=0.225  Sum_probs=41.1

Q ss_pred             HHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc-------C--CCeEEEEcCCCHHHHHHHHHhcCCCCcceE
Q 030327           77 LKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL-------N--APFETVNILENEMLRQGLKEYSSWPTFPQL  147 (179)
Q Consensus        77 ~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-------g--v~y~~vdV~~d~~~~~~L~~~sg~~tvP~V  147 (179)
                      .++.++++.+...++|+...    +||++|++....|++.       +  +.+..+|++.++++    .+..+-.++|.+
T Consensus         5 ~~~~~~~~~~~~~vlv~f~a----~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~I~~~Pt~   76 (104)
T cd03000           5 LDDSFKDVRKEDIWLVDFYA----PWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSI----ASEFGVRGYPTI   76 (104)
T ss_pred             chhhhhhhccCCeEEEEEEC----CCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhH----HhhcCCccccEE
Confidence            34455566666677777665    7999999888777442       2  44556676665544    344567788988

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>TIGR00014 arsC arsenate reductase (glutaredoxin)

Probab=97.29  E-value=0.00037  Score=52.19  Aligned_cols=35  Identities=26%  Similarity=0.484  Sum_probs=31.5

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCH
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENE  129 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~  129 (179)
                      |++|..     |.|.-|++++++|++.|++|+++|+.+++
T Consensus         1 i~iy~~-----~~C~t~rkA~~~L~~~~i~~~~~di~~~p   35 (114)
T TIGR00014         1 VTIYHN-----PRCSKSRNTLALLEDKGIEPEVVKYLKNP   35 (114)
T ss_pred             CEEEEC-----CCCHHHHHHHHHHHHCCCCeEEEeccCCC
Confidence            468998     69999999999999999999999997653

composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=97.28  E-value=0.0018  Score=48.75  Aligned_cols=63  Identities=21%  Similarity=0.281  Sum_probs=43.7

Q ss_pred             CCcEEEEEeeCCCCCC--CchHHHHHHHHHhc-----C-CCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCEEEee
Q 030327           87 GNKVVLFMKGTKDFPQ--CGFSHTVVQILKSL-----N-APFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEFFGG  156 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~--Cp~C~~ak~lL~~~-----g-v~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~~IGG  156 (179)
                      ...+|++...    +|  ||.|+.+..+|++.     + +.+..+|+++++++    ....+-.++|++  |-||+.++.
T Consensus        27 ~~~~v~~f~~----~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~l----a~~f~V~sIPTli~fkdGk~v~~   98 (111)
T cd02965          27 GGDLVLLLAG----DPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQAL----AARFGVLRTPALLFFRDGRYVGV   98 (111)
T ss_pred             CCCEEEEecC----CcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHH----HHHcCCCcCCEEEEEECCEEEEE
Confidence            3555555554    45  99999999998665     2 34668888887744    444566677776  779998875


Q ss_pred             c
Q 030327          157 C  157 (179)
Q Consensus       157 ~  157 (179)
                      .
T Consensus        99 ~   99 (111)
T cd02965          99 L   99 (111)
T ss_pred             E
Confidence            5

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=97.28  E-value=0.0013  Score=46.44  Aligned_cols=66  Identities=17%  Similarity=0.309  Sum_probs=41.8

Q ss_pred             HHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc---------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--ee
Q 030327           81 LDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL---------NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YI  149 (179)
Q Consensus        81 l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~---------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fI  149 (179)
                      +++.+..+.++|+...    +||+.|+.....|++.         ++.+..+|.+.++.+    .+..+...+|.+  |-
T Consensus        10 f~~~~~~~~~lv~f~a----~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~   81 (102)
T cd03005          10 FDHHIAEGNHFVKFFA----PWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHREL----CSEFQVRGYPTLLLFK   81 (102)
T ss_pred             HHHHhhcCCEEEEEEC----CCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhh----HhhcCCCcCCEEEEEe
Confidence            4455555566666655    7999999887777443         245666777666544    333466788876  44


Q ss_pred             CCEEE
Q 030327          150 EGEFF  154 (179)
Q Consensus       150 dG~~I  154 (179)
                      +|+.+
T Consensus        82 ~g~~~   86 (102)
T cd03005          82 DGEKV   86 (102)
T ss_pred             CCCee
Confidence            77544

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=97.26  E-value=0.0018  Score=46.88  Aligned_cols=64  Identities=16%  Similarity=0.346  Sum_probs=41.9

Q ss_pred             HHhhhcCCc-EEEEEeeCCCCCCCchHHHHHHHHHhc------------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE
Q 030327           81 LDKVVTGNK-VVLFMKGTKDFPQCGFSHTVVQILKSL------------NAPFETVNILENEMLRQGLKEYSSWPTFPQL  147 (179)
Q Consensus        81 l~~li~~~~-Vvlysk~t~~~p~Cp~C~~ak~lL~~~------------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V  147 (179)
                      ++++++.++ ++|+...    +||++|+.....+++.            .+.+-.+|.+.+++    +.+..|..++|.+
T Consensus        11 f~~~i~~~~~vlv~F~a----~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~----l~~~~~v~~~Ptl   82 (108)
T cd02996          11 IDDILQSAELVLVNFYA----DWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESD----IADRYRINKYPTL   82 (108)
T ss_pred             HHHHHhcCCEEEEEEEC----CCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHH----HHHhCCCCcCCEE
Confidence            444455544 4444443    7999999999888532            25567788877754    3444577888987


Q ss_pred             --eeCCE
Q 030327          148 --YIEGE  152 (179)
Q Consensus       148 --fIdG~  152 (179)
                        |-+|+
T Consensus        83 ~~~~~g~   89 (108)
T cd02996          83 KLFRNGM   89 (108)
T ss_pred             EEEeCCc
Confidence              55776

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=97.25  E-value=0.0019  Score=46.10  Aligned_cols=66  Identities=18%  Similarity=0.327  Sum_probs=42.0

Q ss_pred             HHhhhcCCc-EEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCC
Q 030327           81 LDKVVTGNK-VVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEG  151 (179)
Q Consensus        81 l~~li~~~~-Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG  151 (179)
                      +++.+...+ ++|+...    +||++|+.+...+++.      .+.+..+|+++++.+    .+..+-..+|.+  |-+|
T Consensus        11 f~~~v~~~~~~~v~f~a----~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~~g   82 (101)
T cd03003          11 FDAAVNSGEIWFVNFYS----PRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRML----CRSQGVNSYPSLYVFPSG   82 (101)
T ss_pred             HHHHhcCCCeEEEEEEC----CCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHH----HHHcCCCccCEEEEEcCC
Confidence            334444433 5555544    7999999998888554      245677888877654    333466778887  5577


Q ss_pred             EEE
Q 030327          152 EFF  154 (179)
Q Consensus       152 ~~I  154 (179)
                      +.+
T Consensus        83 ~~~   85 (101)
T cd03003          83 MNP   85 (101)
T ss_pred             CCc
Confidence            543

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=97.24  E-value=0.0025  Score=45.51  Aligned_cols=55  Identities=16%  Similarity=0.312  Sum_probs=36.8

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCC
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEG  151 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG  151 (179)
                      .++|+...    +||+.|+.+...+++.      ++.+..+|.++++++.    +..|...+|.+  |.+|
T Consensus        21 ~v~v~f~a----~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~----~~~~i~~~Pt~~~~~~g   83 (104)
T cd03004          21 PWLVDFYA----PWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLC----QQANIRAYPTIRLYPGN   83 (104)
T ss_pred             eEEEEEEC----CCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHH----HHcCCCcccEEEEEcCC
Confidence            45554443    6999999988877543      3567788887766543    33467778877  4466

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs

Probab=97.24  E-value=0.002  Score=43.94  Aligned_cols=64  Identities=20%  Similarity=0.140  Sum_probs=52.1

Q ss_pred             CCCchHHHHHHHHHhcCCCeEEEEcCCC-HHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHH
Q 030327          101 PQCGFSHTVVQILKSLNAPFETVNILEN-EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAY  164 (179)
Q Consensus       101 p~Cp~C~~ak~lL~~~gv~y~~vdV~~d-~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~  164 (179)
                      ..|++|.+++-+|...|++|+.++++-. .+...++++.+...++|.+..+|..+.....+.++.
T Consensus         8 ~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~YL   72 (73)
T cd03043           8 NYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPTGKVPVLVDGGIVVWDSLAICEYL   72 (73)
T ss_pred             CCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCCCcCCEEEECCEEEEcHHHHHHHh
Confidence            5799999999999999999998887532 223456777778899999999999888888777653

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=97.21  E-value=0.0015  Score=48.96  Aligned_cols=50  Identities=16%  Similarity=0.155  Sum_probs=33.8

Q ss_pred             CCCchHHHHHHHHHhcC------CCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCEE
Q 030327          101 PQCGFSHTVVQILKSLN------APFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEF  153 (179)
Q Consensus       101 p~Cp~C~~ak~lL~~~g------v~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~~  153 (179)
                      |||++|+.+...+++..      +.+-.+|++.+.++.   .+..+..++|.+  |.+|+.
T Consensus        39 ~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~---~~~~~I~~~PTl~lf~~g~~   96 (113)
T cd03006          39 PWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKC---RKQKHFFYFPVIHLYYRSRG   96 (113)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHH---HHhcCCcccCEEEEEECCcc
Confidence            79999999998886652      456788887776542   122344556655  777763

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=97.21  E-value=0.0018  Score=43.98  Aligned_cols=69  Identities=19%  Similarity=0.236  Sum_probs=52.0

Q ss_pred             EEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC--HHHHHHHHHhcCCCCcceEeeC-CEEEeecHHHHHHHH
Q 030327           91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN--EMLRQGLKEYSSWPTFPQLYIE-GEFFGGCDITVEAYK  165 (179)
Q Consensus        91 vlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d--~~~~~~L~~~sg~~tvP~VfId-G~~IGG~del~~l~~  165 (179)
                      .+|..     +.| .|.+++-+|.+.|++|+.++++..  +....++.+.+...++|.+..+ |..+.....+.++.+
T Consensus         2 ~Ly~~-----~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL~   73 (77)
T cd03057           2 KLYYS-----PGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQYLA   73 (77)
T ss_pred             EEEeC-----CCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHHHH
Confidence            46665     344 488899999999999998877542  2334667778889999999887 788888877777653

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.

>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S

Probab=97.21  E-value=0.0019  Score=43.44  Aligned_cols=62  Identities=15%  Similarity=0.099  Sum_probs=50.0

Q ss_pred             chHHHHHHHHHhcCCCeEEEEcCCC--HHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327          104 GFSHTVVQILKSLNAPFETVNILEN--EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus       104 p~C~~ak~lL~~~gv~y~~vdV~~d--~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      +.|.+++-+|...|++|+.+.++..  .....++.+.....++|.+..||..+.....+.++.+
T Consensus         9 ~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL~   72 (76)
T cd03046           9 SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYLA   72 (76)
T ss_pred             CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHHH
Confidence            5688999999999999998887642  2334566677788899999999999999888888754

cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=97.20  E-value=0.0013  Score=46.22  Aligned_cols=60  Identities=20%  Similarity=0.242  Sum_probs=40.3

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEe--eCCEEEe
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQLY--IEGEFFG  155 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~Vf--IdG~~IG  155 (179)
                      ..|+|+...    +||+.|+.+...|.+.      ++.+..+|++.+.++.+    ..+...+|.++  -+|+.+.
T Consensus        13 ~~vlv~f~a----~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~----~~~i~~~Pt~~~~~~g~~~~   80 (96)
T cd02956          13 VPVVVDFWA----PRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQ----QFGVQALPTVYLFAAGQPVD   80 (96)
T ss_pred             CeEEEEEEC----CCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHH----HcCCCCCCEEEEEeCCEEee
Confidence            356666665    7999999998888653      23456777777665444    34666788874  5776553

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=97.17  E-value=0.0019  Score=49.94  Aligned_cols=69  Identities=12%  Similarity=0.162  Sum_probs=43.3

Q ss_pred             HHhhhcC-CcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEe-e--C
Q 030327           81 LDKVVTG-NKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQLY-I--E  150 (179)
Q Consensus        81 l~~li~~-~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~Vf-I--d  150 (179)
                      +++++.. ..|+|+...    +||++|+.....|.++      ++.|..+|++.+. . ..+.+..+...+|.++ +  +
T Consensus        13 ~~~a~~~gk~vvV~F~A----~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~-~-~~~~~~~~V~~iPt~v~~~~~   86 (142)
T cd02950          13 PEVALSNGKPTLVEFYA----DWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK-W-LPEIDRYRVDGIPHFVFLDRE   86 (142)
T ss_pred             HHHHHhCCCEEEEEEEC----CcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc-c-HHHHHHcCCCCCCEEEEECCC
Confidence            3344444 446666665    7999999998888653      2457777776542 1 2334445788899874 4  5


Q ss_pred             CEEEe
Q 030327          151 GEFFG  155 (179)
Q Consensus       151 G~~IG  155 (179)
                      |+.++
T Consensus        87 G~~v~   91 (142)
T cd02950          87 GNEEG   91 (142)
T ss_pred             CCEEE
Confidence            76553

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=97.14  E-value=0.0016  Score=48.82  Aligned_cols=73  Identities=16%  Similarity=0.372  Sum_probs=44.7

Q ss_pred             HHHHHHhhhcCCc-EEEEEeeCCCCCCCchHHHHHHHHHh------cCCCeEEEEcCCCHH-HHHHHHHhcCCCCcceE-
Q 030327           77 LKSTLDKVVTGNK-VVLFMKGTKDFPQCGFSHTVVQILKS------LNAPFETVNILENEM-LRQGLKEYSSWPTFPQL-  147 (179)
Q Consensus        77 ~~~~l~~li~~~~-Vvlysk~t~~~p~Cp~C~~ak~lL~~------~gv~y~~vdV~~d~~-~~~~L~~~sg~~tvP~V-  147 (179)
                      .++.++....+++ |+|+...    +||++|+.....+.+      .+..|..+|++.+++ ..+.+... | ..+|.+ 
T Consensus         8 ~~~al~~A~~~~kpVlV~F~a----~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~-g-~~vPt~~   81 (117)
T cd02959           8 LEDGIKEAKDSGKPLMLLIHK----TWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPD-G-GYIPRIL   81 (117)
T ss_pred             HHHHHHHHHHcCCcEEEEEeC----CcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccC-C-CccceEE
Confidence            4566666665554 5555544    699999999888866      345688889987643 22222211 1 238877 


Q ss_pred             ee--CCEEEe
Q 030327          148 YI--EGEFFG  155 (179)
Q Consensus       148 fI--dG~~IG  155 (179)
                      |+  +|+.++
T Consensus        82 f~~~~Gk~~~   91 (117)
T cd02959          82 FLDPSGDVHP   91 (117)
T ss_pred             EECCCCCCch
Confidence            44  566544

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=97.14  E-value=0.0025  Score=46.02  Aligned_cols=67  Identities=16%  Similarity=0.217  Sum_probs=36.8

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhc---------CCCeEEEEcCCCHH----------------HHHHHHHhcCCC
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSL---------NAPFETVNILENEM----------------LRQGLKEYSSWP  142 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~---------gv~y~~vdV~~d~~----------------~~~~L~~~sg~~  142 (179)
                      .+++++..+    ||||+|+++.+.+.+.         ++.+..++++.+..                ...++....|..
T Consensus         6 k~~v~~F~~----~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~   81 (112)
T PF13098_consen    6 KPIVVVFTD----PWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVN   81 (112)
T ss_dssp             SEEEEEEE-----TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--
T ss_pred             CEEEEEEEC----CCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCC
Confidence            344444444    7999999987766531         23345556654332                124566666889


Q ss_pred             CcceEee-C--CE---EEeecH
Q 030327          143 TFPQLYI-E--GE---FFGGCD  158 (179)
Q Consensus       143 tvP~VfI-d--G~---~IGG~d  158 (179)
                      .+|.+++ |  |+   .+-|+-
T Consensus        82 gtPt~~~~d~~G~~v~~~~G~~  103 (112)
T PF13098_consen   82 GTPTIVFLDKDGKIVYRIPGYL  103 (112)
T ss_dssp             SSSEEEECTTTSCEEEEEESS-
T ss_pred             ccCEEEEEcCCCCEEEEecCCC
Confidence            9999855 4  66   444553

...

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=97.13  E-value=0.0016  Score=49.46  Aligned_cols=69  Identities=10%  Similarity=0.154  Sum_probs=46.3

Q ss_pred             HHHHhhhcCC--cEEEEEeeCCCCCCCch--HH----------HHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCc
Q 030327           79 STLDKVVTGN--KVVLFMKGTKDFPQCGF--SH----------TVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTF  144 (179)
Q Consensus        79 ~~l~~li~~~--~Vvlysk~t~~~p~Cp~--C~----------~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tv  144 (179)
                      +..++.+.++  .|++|...    +||+.  |+          .+.++|++.++.+..+|+++++++.+.    .|-..+
T Consensus        17 ~nF~~~v~~~~~~vvv~f~a----~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~----~~I~~i   88 (120)
T cd03065          17 KNYKQVLKKYDVLCLLYHEP----VESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKK----LGLDEE   88 (120)
T ss_pred             hhHHHHHHhCCceEEEEECC----CcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHH----cCCccc
Confidence            3355555554  46777775    58866  97          233455566899999999998776554    355566


Q ss_pred             ceE--eeCCEEEe
Q 030327          145 PQL--YIEGEFFG  155 (179)
Q Consensus       145 P~V--fIdG~~IG  155 (179)
                      |++  |.||+.+.
T Consensus        89 PTl~lfk~G~~v~  101 (120)
T cd03065          89 DSIYVFKDDEVIE  101 (120)
T ss_pred             cEEEEEECCEEEE
Confidence            666  88998764

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=97.13  E-value=0.002  Score=50.43  Aligned_cols=51  Identities=16%  Similarity=0.026  Sum_probs=34.8

Q ss_pred             CCCchHHHHHHHHHhcC------CCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCE
Q 030327          101 PQCGFSHTVVQILKSLN------APFETVNILENEMLRQGLKEYSSWPTFPQLYIEGE  152 (179)
Q Consensus       101 p~Cp~C~~ak~lL~~~g------v~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~  152 (179)
                      +||+.|+.+-.+|++.-      +.+..+|||+++++.+.+.-. +.+++=.+|-||+
T Consensus        33 ~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~-~~~t~~~ffk~g~   89 (142)
T PLN00410         33 DWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELY-DPCTVMFFFRNKH   89 (142)
T ss_pred             CCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCcc-CCCcEEEEEECCe
Confidence            59999999999987752      346789999999887765533 2222212455776

>PRK15113 glutathione S-transferase; Provisional

Probab=97.10  E-value=0.0031  Score=51.11  Aligned_cols=75  Identities=16%  Similarity=0.165  Sum_probs=58.1

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCC--CHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE--NEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~--d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      ..+++|+..   .+.|++|.++.-+|.++|++|+.+.++-  .+...+++.+++-...||++..||..|-....+.++.+
T Consensus         4 ~~~~Ly~~~---~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~YL~   80 (214)
T PRK15113          4 PAITLYSDA---HFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQHDDFELSESSAIAEYLE   80 (214)
T ss_pred             CeEEEEeCC---CCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEECCEEEecHHHHHHHHH
Confidence            457888862   0259999999999999999999888753  33344677778888899999999988877777766543

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=97.09  E-value=0.0028  Score=48.27  Aligned_cols=73  Identities=16%  Similarity=0.157  Sum_probs=44.1

Q ss_pred             HHHhhhcCCc-EEEEEeeCCCCCCCchHHHHHH-HH------HhcC--CCeEEEEcCCCHHHHHHHH----HhcCCCCcc
Q 030327           80 TLDKVVTGNK-VVLFMKGTKDFPQCGFSHTVVQ-IL------KSLN--APFETVNILENEMLRQGLK----EYSSWPTFP  145 (179)
Q Consensus        80 ~l~~li~~~~-Vvlysk~t~~~p~Cp~C~~ak~-lL------~~~g--v~y~~vdV~~d~~~~~~L~----~~sg~~tvP  145 (179)
                      .++++.++++ |+|+..+    .||++|+++.+ .+      +.++  +-+..+|+++++++.+.+.    ...|...+|
T Consensus         7 al~~Ak~~~KpVll~f~a----~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~P   82 (124)
T cd02955           7 AFEKARREDKPIFLSIGY----STCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWP   82 (124)
T ss_pred             HHHHHHHcCCeEEEEEcc----CCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCC
Confidence            3555555555 7776654    69999998864 33      2223  3344556666666655333    245777788


Q ss_pred             eEee---CCEEEee
Q 030327          146 QLYI---EGEFFGG  156 (179)
Q Consensus       146 ~VfI---dG~~IGG  156 (179)
                      .+.+   +|+.+.+
T Consensus        83 t~vfl~~~G~~~~~   96 (124)
T cd02955          83 LNVFLTPDLKPFFG   96 (124)
T ss_pred             EEEEECCCCCEEee
Confidence            7744   6888843

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>PLN02817 glutathione dehydrogenase (ascorbate)

Probab=97.04  E-value=0.0044  Score=52.84  Aligned_cols=64  Identities=14%  Similarity=0.285  Sum_probs=51.0

Q ss_pred             CCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHc
Q 030327          102 QCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKN  166 (179)
Q Consensus       102 ~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~  166 (179)
                      .||+|.++.-+|.++|++|+.+.|+-.. ..+++.+++-..++|.+..||..+.....+.++.++
T Consensus        72 ~cp~s~rV~i~L~ekgi~ye~~~vdl~~-~~~~fl~iNP~GkVPvL~~d~~~L~ES~aI~~YL~e  135 (265)
T PLN02817         72 DCPFCQRVLLTLEEKHLPYDMKLVDLTN-KPEWFLKISPEGKVPVVKLDEKWVADSDVITQALEE  135 (265)
T ss_pred             CCcHHHHHHHHHHHcCCCCEEEEeCcCc-CCHHHHhhCCCCCCCEEEECCEEEecHHHHHHHHHH
Confidence            7999999999999999999987775432 123456677788999999999888888877776543

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=97.03  E-value=0.0043  Score=43.80  Aligned_cols=50  Identities=18%  Similarity=0.230  Sum_probs=34.2

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQL  147 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V  147 (179)
                      ++|+...    +||++|+.....|.+.      .+.+..+|+++++++.+    ..|...+|.+
T Consensus        21 vlv~f~a----~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~----~~~i~~~P~~   76 (103)
T cd03001          21 WLVEFYA----PWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQ----QYGVRGFPTI   76 (103)
T ss_pred             EEEEEEC----CCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHH----HCCCCccCEE
Confidence            5555554    6999999998877553      35577777776665433    3466789977

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=96.99  E-value=0.0047  Score=45.03  Aligned_cols=46  Identities=24%  Similarity=0.371  Sum_probs=29.9

Q ss_pred             CCCchHHHHHHHHHhc-------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEe
Q 030327          101 PQCGFSHTVVQILKSL-------NAPFETVNILENEMLRQGLKEYSSWPTFPQLY  148 (179)
Q Consensus       101 p~Cp~C~~ak~lL~~~-------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~Vf  148 (179)
                      +||++|+++...|.+.       ++.+-.+|++.+.  .+...+..+...+|.++
T Consensus        31 ~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~--~~~~~~~~~v~~~Pti~   83 (109)
T cd02993          31 PWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQ--REFAKEELQLKSFPTIL   83 (109)
T ss_pred             CCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccc--hhhHHhhcCCCcCCEEE
Confidence            6999999999888553       3456666766521  12233345777899773

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=96.96  E-value=0.0055  Score=44.35  Aligned_cols=54  Identities=13%  Similarity=0.169  Sum_probs=35.1

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcC-CCHHHHHHHHHhcCCCCcceEe
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNIL-ENEMLRQGLKEYSSWPTFPQLY  148 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~-~d~~~~~~L~~~sg~~tvP~Vf  148 (179)
                      ...|+|+...    +||++|+.....|++.     ++.+-.+|.+ .+++    +.+..+...+|.++
T Consensus        18 g~~vlV~F~a----~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~----l~~~~~V~~~PT~~   77 (100)
T cd02999          18 EDYTAVLFYA----SWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPS----LLSRYGVVGFPTIL   77 (100)
T ss_pred             CCEEEEEEEC----CCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHH----HHHhcCCeecCEEE
Confidence            3445555554    7999999999888664     4556666665 4443    34445677888763

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=96.92  E-value=0.0079  Score=41.30  Aligned_cols=62  Identities=18%  Similarity=0.340  Sum_probs=37.9

Q ss_pred             HHHhhhcCC-cEEEEEeeCCCCCCCchHHHHHHHHHh----c----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee
Q 030327           80 TLDKVVTGN-KVVLFMKGTKDFPQCGFSHTVVQILKS----L----NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI  149 (179)
Q Consensus        80 ~l~~li~~~-~Vvlysk~t~~~p~Cp~C~~ak~lL~~----~----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI  149 (179)
                      .+.+.+.+. .++|+..+    +||++|+.+...+.+    .    ++.+..+|.+.+.    .+.+..+...+|.+++
T Consensus         7 ~~~~~i~~~~~~~v~f~~----~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~i~~~Pt~~~   77 (101)
T cd02961           7 NFDELVKDSKDVLVEFYA----PWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANN----DLCSEYGVRGYPTIKL   77 (101)
T ss_pred             HHHHHHhCCCcEEEEEEC----CCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchH----HHHHhCCCCCCCEEEE
Confidence            344555554 45544444    699999999888854    2    2345555555433    3444457788998843

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>PLN02378 glutathione S-transferase DHAR1

Probab=96.92  E-value=0.0035  Score=50.99  Aligned_cols=65  Identities=18%  Similarity=0.262  Sum_probs=51.6

Q ss_pred             CCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHc
Q 030327          101 PQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKN  166 (179)
Q Consensus       101 p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~  166 (179)
                      ..||||.++.-+|.++|++|+.+.|+-.. -.+++.+.+...++|.+..||..+.....+.++.++
T Consensus        18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~~-~~~~~l~inP~G~VPvL~~~~~~l~ES~aI~~YL~~   82 (213)
T PLN02378         18 GDCPFSQRALLTLEEKSLTYKIHLINLSD-KPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGILEE   82 (213)
T ss_pred             CCCcchHHHHHHHHHcCCCCeEEEeCccc-CCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHH
Confidence            57999999999999999999887775421 123566778889999999999888877777776543

>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.92  E-value=0.0046  Score=52.10  Aligned_cols=73  Identities=23%  Similarity=0.125  Sum_probs=59.1

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhc-CCCCcceEeeCCEEEeecHHHHHHHHc
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYS-SWPTFPQLYIEGEFFGGCDITVEAYKN  166 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~s-g~~tvP~VfIdG~~IGG~del~~l~~~  166 (179)
                      +.|.||+.-     -|||..++.-.|+..||+|++++++-.. --+.|.+.. -...+|++..||+.|+-.-.+.++.++
T Consensus         8 ~~vrL~~~w-----~sPfa~R~~iaL~~KgI~yE~veedl~~-Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe   81 (231)
T KOG0406|consen    8 GTVKLLGMW-----FSPFAQRVRIALKLKGIPYEYVEEDLTN-KSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDE   81 (231)
T ss_pred             CeEEEEEee-----cChHHHHHHHHHHhcCCceEEEecCCCC-CCHHHHHhccccccCCEEEECCceehhhHHHHHHHHh
Confidence            669999995     7999999999999999999999986432 224555555 577899999999999888777777554

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=96.88  E-value=0.0075  Score=49.17  Aligned_cols=89  Identities=16%  Similarity=0.120  Sum_probs=52.4

Q ss_pred             HHHHHhhhcCC---cEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--
Q 030327           78 KSTLDKVVTGN---KVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQL--  147 (179)
Q Consensus        78 ~~~l~~li~~~---~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--  147 (179)
                      ..+.+.+....   .|+|+...    +||+.|+.+...|+++     .+.|..+|++..       ....+-..+|.+  
T Consensus        90 ~~f~~eV~~as~~~~VVV~Fya----~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~-------~~~~~i~~lPTlli  158 (192)
T cd02988          90 PDYVREVTEASKDTWVVVHLYK----DGIPLCRLLNQHLSELARKFPDTKFVKIISTQC-------IPNYPDKNLPTILV  158 (192)
T ss_pred             HHHHHHHHhcCCCCEEEEEEEC----CCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh-------HhhCCCCCCCEEEE
Confidence            34444444432   46665554    6999999998888665     356777777421       234577788887  


Q ss_pred             eeCCEEEeecHHHHHH----HHcccHHHHHHhhh
Q 030327          148 YIEGEFFGGCDITVEA----YKNGELQELLEKAL  177 (179)
Q Consensus       148 fIdG~~IGG~del~~l----~~~GeL~~~L~~a~  177 (179)
                      |.||+.++-.--+..+    ....+|+.+|...|
T Consensus       159 yk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~~g  192 (192)
T cd02988         159 YRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQVG  192 (192)
T ss_pred             EECCEEEEEEeCchhhCCCCCCHHHHHHHHHhcC
Confidence            6699876543322222    12245555555443

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=96.87  E-value=0.0035  Score=47.58  Aligned_cols=56  Identities=7%  Similarity=0.122  Sum_probs=34.1

Q ss_pred             CCCchHHHHHHHHHh----c--CCCeEEEEcCCCHHH---HHHHHHhcCCC-CcceE--eeCCEEEee
Q 030327          101 PQCGFSHTVVQILKS----L--NAPFETVNILENEML---RQGLKEYSSWP-TFPQL--YIEGEFFGG  156 (179)
Q Consensus       101 p~Cp~C~~ak~lL~~----~--gv~y~~vdV~~d~~~---~~~L~~~sg~~-tvP~V--fIdG~~IGG  156 (179)
                      +||+.|+.+..+|++    .  ++.|..+|+++++..   ...+....+-. .+|.+  |-+|+.+-|
T Consensus        38 ~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~~~l~~  105 (119)
T cd02952          38 SWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTPQRLVE  105 (119)
T ss_pred             CCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCCceecc
Confidence            499999988776644    3  367888888764321   13344434444 78877  435544443

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>PTZ00062 glutaredoxin; Provisional

Probab=96.80  E-value=0.006  Score=50.44  Aligned_cols=65  Identities=14%  Similarity=0.227  Sum_probs=43.6

Q ss_pred             HHHHhhhc--CCcEEEEEeeCCCCCCCchHHHHHHHHHhcCC---CeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCC
Q 030327           79 STLDKVVT--GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNA---PFETVNILENEMLRQGLKEYSSWPTFPQL--YIEG  151 (179)
Q Consensus        79 ~~l~~li~--~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv---~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG  151 (179)
                      +.+.++++  ...+++|...    +||+.|+.+..+|.++--   .+..+.|+.+          .+-..+|.+  |-||
T Consensus         7 ee~~~~i~~~~g~~vl~f~a----~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d----------~~V~~vPtfv~~~~g   72 (204)
T PTZ00062          7 EEKDKLIESNTGKLVLYVKS----SKEPEYEQLMDVCNALVEDFPSLEFYVVNLA----------DANNEYGVFEFYQNS   72 (204)
T ss_pred             HHHHHHHhcCCCcEEEEEeC----CCCcchHHHHHHHHHHHHHCCCcEEEEEccc----------cCcccceEEEEEECC
Confidence            44566666  4667777765    799999999999977632   2444444433          466677755  6688


Q ss_pred             EEEeec
Q 030327          152 EFFGGC  157 (179)
Q Consensus       152 ~~IGG~  157 (179)
                      +.|+..
T Consensus        73 ~~i~r~   78 (204)
T PTZ00062         73 QLINSL   78 (204)
T ss_pred             EEEeee
Confidence            888643

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=96.79  E-value=0.0087  Score=50.08  Aligned_cols=65  Identities=14%  Similarity=0.314  Sum_probs=42.5

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhc---CCCeEEEEcC------------------CCHH--H--------------
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSL---NAPFETVNIL------------------ENEM--L--------------  131 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~---gv~y~~vdV~------------------~d~~--~--------------  131 (179)
                      .|++|+.     |.||||+++-+.|.++   ++.+.++...                  .|+.  +              
T Consensus       110 ~I~vFtD-----p~CpyCkkl~~~l~~~~~~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c  184 (232)
T PRK10877        110 VITVFTD-----ITCGYCHKLHEQMKDYNALGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASC  184 (232)
T ss_pred             EEEEEEC-----CCChHHHHHHHHHHHHhcCCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcccc
Confidence            3677777     7999999998888775   4555444321                  0110  0              


Q ss_pred             ------HHHHHHhcCCCCcceEee-CCEEEeecH
Q 030327          132 ------RQGLKEYSSWPTFPQLYI-EGEFFGGCD  158 (179)
Q Consensus       132 ------~~~L~~~sg~~tvP~VfI-dG~~IGG~d  158 (179)
                            ..++.+..|....|.+++ ||+.+.|+.
T Consensus       185 ~~~v~~~~~la~~lgi~gTPtiv~~~G~~~~G~~  218 (232)
T PRK10877        185 DVDIADHYALGVQFGVQGTPAIVLSNGTLVPGYQ  218 (232)
T ss_pred             cchHHHhHHHHHHcCCccccEEEEcCCeEeeCCC
Confidence                  122333347788999988 999999974

>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []

Probab=96.75  E-value=0.0034  Score=46.32  Aligned_cols=36  Identities=17%  Similarity=0.422  Sum_probs=25.6

Q ss_pred             CCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHH
Q 030327          101 PQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLK  136 (179)
Q Consensus       101 p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~  136 (179)
                      +.|.-|++|+++|++.|++|+++|+..++--+++|.
T Consensus         4 ~~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~   39 (110)
T PF03960_consen    4 PNCSTCRKALKWLEENGIEYEFIDYKKEPLSREELR   39 (110)
T ss_dssp             TT-HHHHHHHHHHHHTT--EEEEETTTS---HHHHH
T ss_pred             CCCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHH
Confidence            589999999999999999999999987644444433

This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=96.67  E-value=0.014  Score=40.80  Aligned_cols=51  Identities=20%  Similarity=0.355  Sum_probs=32.9

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhc--------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSL--------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI  149 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~--------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI  149 (179)
                      +++|..     +||+.|+.....|.+.        ++.+..+|.+.+.++    .+..+...+|.+++
T Consensus        17 ~i~f~~-----~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~i~~~P~~~~   75 (102)
T TIGR01126        17 LVEFYA-----PWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDL----ASRFGVSGFPTIKF   75 (102)
T ss_pred             EEEEEC-----CCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHH----HHhCCCCcCCEEEE
Confidence            444555     6999999877766442        245666666665444    34457788998833

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>PLN02473 glutathione S-transferase

Probab=96.63  E-value=0.0093  Score=47.95  Aligned_cols=71  Identities=10%  Similarity=0.054  Sum_probs=55.6

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC--HHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN--EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d--~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      +.||..     +.+++|.+++-+|.++|++|+.+.++-.  +....++.+.+...++|.+..||..|.....+.++.+
T Consensus         3 ~kLy~~-----~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~YL~   75 (214)
T PLN02473          3 VKVYGQ-----IKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIEDGDLKLFESRAIARYYA   75 (214)
T ss_pred             eEEecC-----CCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEECCEEEEehHHHHHHHH
Confidence            467776     4799999999999999999998876432  2334455566778899999999999998888877653

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=96.63  E-value=0.0094  Score=42.64  Aligned_cols=57  Identities=16%  Similarity=0.215  Sum_probs=35.5

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CCE
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGE  152 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG~  152 (179)
                      ++|+...    +||++|++....+.+.      .+.+..+|++.++  ...+....+...+|.+++  +|.
T Consensus        21 ~lv~f~a----~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~--~~~~~~~~~i~~~Pt~~~~~~~~   85 (109)
T cd03002          21 TLVEFYA----PWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDK--NKPLCGKYGVQGFPTLKVFRPPK   85 (109)
T ss_pred             EEEEEEC----CCCHHHHhhChHHHHHHHHhcCCceEEEEecCccc--cHHHHHHcCCCcCCEEEEEeCCC
Confidence            5555554    6999999988777554      2446666776521  123444457778898744  553

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>COG3019 Predicted metal-binding protein [General function prediction only]

Probab=96.62  E-value=0.011  Score=46.45  Aligned_cols=78  Identities=15%  Similarity=0.225  Sum_probs=59.1

Q ss_pred             cCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeec---HHHHH
Q 030327           86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGC---DITVE  162 (179)
Q Consensus        86 ~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~---del~~  162 (179)
                      ....+++|-.     |+|+-|+.-.+.|+..|+++..++.++-..+++.+.-.....+.=+..|||.+|-|.   +++.+
T Consensus        24 ~~~~~~vyks-----PnCGCC~~w~~~mk~~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~   98 (149)
T COG3019          24 QATEMVVYKS-----PNCGCCDEWAQHMKANGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIAR   98 (149)
T ss_pred             ceeeEEEEeC-----CCCccHHHHHHHHHhCCcEEEEeecCcHHHHHHhcCCChhhccccEEEEcCEEEeccCCHHHHHH
Confidence            3445666666     899999999999999999998888766566666544333344566789999999997   67888


Q ss_pred             HHHccc
Q 030327          163 AYKNGE  168 (179)
Q Consensus       163 l~~~Ge  168 (179)
                      +.+++.
T Consensus        99 ll~~~p  104 (149)
T COG3019          99 LLAEKP  104 (149)
T ss_pred             HHhCCC
Confidence            877665

>PF13728 TraF: F plasmid transfer operon protein

Probab=96.58  E-value=0.0078  Score=49.93  Aligned_cols=73  Identities=12%  Similarity=0.228  Sum_probs=54.5

Q ss_pred             cCCHHHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHH----HhcCCCeEEEEcCCC-------HHHHHHHHHhcC
Q 030327           72 ALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQIL----KSLNAPFETVNILEN-------EMLRQGLKEYSS  140 (179)
Q Consensus        72 ~~~~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL----~~~gv~y~~vdV~~d-------~~~~~~L~~~sg  140 (179)
                      ....+.+..++++.+...+++|..+     .|++|+....+|    +++|+++..|++|..       ......+.+..|
T Consensus       106 ~~~~~~~~~l~~la~~~gL~~F~~~-----~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~  180 (215)
T PF13728_consen  106 QREQKRDKALKQLAQKYGLFFFYRS-----DCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLG  180 (215)
T ss_pred             HHHHHHHHHHHHHhhCeEEEEEEcC-----CCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcC
Confidence            3445667788889999999999997     999999888777    556899989998732       111234444557


Q ss_pred             CCCcceEee
Q 030327          141 WPTFPQLYI  149 (179)
Q Consensus       141 ~~tvP~VfI  149 (179)
                      -..+|.+|+
T Consensus       181 v~~~Pal~L  189 (215)
T PF13728_consen  181 VKVTPALFL  189 (215)
T ss_pred             CCcCCEEEE
Confidence            789999976

>TIGR02740 TraF-like TraF-like protein

Probab=96.50  E-value=0.0092  Score=51.11  Aligned_cols=66  Identities=15%  Similarity=0.348  Sum_probs=43.2

Q ss_pred             HHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHH----hcCCCeEEEEcCCCHH-------HHHHHHHhcCCCCcceE
Q 030327           79 STLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILK----SLNAPFETVNILENEM-------LRQGLKEYSSWPTFPQL  147 (179)
Q Consensus        79 ~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~----~~gv~y~~vdV~~d~~-------~~~~L~~~sg~~tvP~V  147 (179)
                      ..++++.....++.|..     +||++|+....+|+    ++|+.+..|+++.+..       ....+.+..|-..+|.+
T Consensus       159 ~~l~~l~~k~~Lv~F~A-----swCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl  233 (271)
T TIGR02740       159 RVMKDLAKKSGLFFFFK-----SDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAV  233 (271)
T ss_pred             HHHHHhcCCeEEEEEEC-----CCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeE
Confidence            44555555555555666     49999998888774    4577777788875321       01234455688899999


Q ss_pred             ee
Q 030327          148 YI  149 (179)
Q Consensus       148 fI  149 (179)
                      |+
T Consensus       234 ~L  235 (271)
T TIGR02740       234 FL  235 (271)
T ss_pred             EE
Confidence            55

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=96.32  E-value=0.018  Score=42.65  Aligned_cols=63  Identities=16%  Similarity=0.258  Sum_probs=36.6

Q ss_pred             HHhhhcCC--cEEEEEeeCCCCCCCchHHHHHHHHHhcC---------CCeEEEEcCCCHHHHHHHHHhcCCCCcceEee
Q 030327           81 LDKVVTGN--KVVLFMKGTKDFPQCGFSHTVVQILKSLN---------APFETVNILENEMLRQGLKEYSSWPTFPQLYI  149 (179)
Q Consensus        81 l~~li~~~--~Vvlysk~t~~~p~Cp~C~~ak~lL~~~g---------v~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI  149 (179)
                      +++.+.++  .|+|+..+    +||+.|+.....+++..         +.+..+|.+.+.  ...+.+..+...+|++++
T Consensus        11 f~~~i~~~~~~vvV~f~a----~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~--~~~~~~~~~i~~~Pt~~l   84 (114)
T cd02992          11 FNSALLGSPSAWLVEFYA----SWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE--NVALCRDFGVTGYPTLRY   84 (114)
T ss_pred             HHHHHhcCCCeEEEEEEC----CCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh--hHHHHHhCCCCCCCEEEE
Confidence            44444443  45555554    79999999888875532         334444543221  234444557788898744

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=96.29  E-value=0.013  Score=41.19  Aligned_cols=50  Identities=22%  Similarity=0.461  Sum_probs=31.2

Q ss_pred             CCCchHHHHHHHHHhc--------CCCeEEEEcCC--CHHHHHHHHHhcCCCCcceE--eeCCEEE
Q 030327          101 PQCGFSHTVVQILKSL--------NAPFETVNILE--NEMLRQGLKEYSSWPTFPQL--YIEGEFF  154 (179)
Q Consensus       101 p~Cp~C~~ak~lL~~~--------gv~y~~vdV~~--d~~~~~~L~~~sg~~tvP~V--fIdG~~I  154 (179)
                      +||++|+.+...+.+.        .+.+..+|++.  ++.    +....|...+|.+  |-+|+.+
T Consensus        27 ~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~----~~~~~~i~~~Pt~~~~~~g~~~   88 (104)
T cd02997          27 PWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDA----LKEEYNVKGFPTFKYFENGKFV   88 (104)
T ss_pred             CCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHH----HHHhCCCccccEEEEEeCCCee
Confidence            6999999887666332        23455667665  333    3344466778877  5566644

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=96.27  E-value=0.029  Score=46.98  Aligned_cols=59  Identities=12%  Similarity=0.267  Sum_probs=39.0

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhc----C--CCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCEEE
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSL----N--APFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEFF  154 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~----g--v~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~~I  154 (179)
                      ..++|+...    +||++|+.....+++.    +  +.+..+|+++++++    .+..+...+|.+  |.+|+.+
T Consensus        53 ~~vlV~FyA----pWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l----~~~~~I~~~PTl~~f~~G~~v  119 (224)
T PTZ00443         53 GPWFVKFYA----PWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNL----AKRFAIKGYPTLLLFDKGKMY  119 (224)
T ss_pred             CCEEEEEEC----CCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHH----HHHcCCCcCCEEEEEECCEEE
Confidence            345555544    7999999998888654    2  44566677666543    444566778876  5588766

>TIGR01262 maiA maleylacetoacetate isomerase

Probab=96.25  E-value=0.011  Score=47.26  Aligned_cols=65  Identities=18%  Similarity=0.119  Sum_probs=51.7

Q ss_pred             CCCchHHHHHHHHHhcCCCeEEEEcCC--C-HHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327          101 PQCGFSHTVVQILKSLNAPFETVNILE--N-EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus       101 p~Cp~C~~ak~lL~~~gv~y~~vdV~~--d-~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      +.|++|.+++-+|.++|++|+.+.++-  . .....++.+.+...++|.+..||..+.....+.++..
T Consensus         6 ~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~yl~   73 (210)
T TIGR01262         6 WRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYLE   73 (210)
T ss_pred             CCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHHHH
Confidence            379999999999999999999887763  1 2223456777788899999999998888887777554

Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=96.19  E-value=0.026  Score=53.15  Aligned_cols=76  Identities=13%  Similarity=0.160  Sum_probs=48.7

Q ss_pred             CHHHHHHHHhhhcC-CcEEEEEeeCCCCCCCchHHHHHHHH-------Hh-cCCCeEEEEcCCCHHHHHHHHHhcCCCCc
Q 030327           74 TPELKSTLDKVVTG-NKVVLFMKGTKDFPQCGFSHTVVQIL-------KS-LNAPFETVNILENEMLRQGLKEYSSWPTF  144 (179)
Q Consensus        74 ~~~~~~~l~~li~~-~~Vvlysk~t~~~p~Cp~C~~ak~lL-------~~-~gv~y~~vdV~~d~~~~~~L~~~sg~~tv  144 (179)
                      .++.++.+++..++ .+|+|+...    +||+.|+...+..       ++ .++.+..+|++++++..+++.+..|...+
T Consensus       460 ~~~l~~~l~~a~~~gK~VlVdF~A----~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v~g~  535 (571)
T PRK00293        460 VAELDQALAEAKGKGKPVMLDLYA----DWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNVLGL  535 (571)
T ss_pred             HHHHHHHHHHHHhcCCcEEEEEEC----CcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCCCCC
Confidence            35666777665554 456665554    6999999876542       22 24567778887664444555556688889


Q ss_pred             ceEee---CCEE
Q 030327          145 PQLYI---EGEF  153 (179)
Q Consensus       145 P~VfI---dG~~  153 (179)
                      |.+++   ||+.
T Consensus       536 Pt~~~~~~~G~~  547 (571)
T PRK00293        536 PTILFFDAQGQE  547 (571)
T ss_pred             CEEEEECCCCCC
Confidence            98844   4654

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=96.19  E-value=0.011  Score=41.02  Aligned_cols=65  Identities=14%  Similarity=0.220  Sum_probs=35.0

Q ss_pred             HHHHHHhhhcCC-cEEEEEeeCCCCCCCchHHHHHHHHHh-------cCCCeEEEEcCCCHHHHH-HHHHhcCCCCcceE
Q 030327           77 LKSTLDKVVTGN-KVVLFMKGTKDFPQCGFSHTVVQILKS-------LNAPFETVNILENEMLRQ-GLKEYSSWPTFPQL  147 (179)
Q Consensus        77 ~~~~l~~li~~~-~Vvlysk~t~~~p~Cp~C~~ak~lL~~-------~gv~y~~vdV~~d~~~~~-~L~~~sg~~tvP~V  147 (179)
                      .++.+.++.+++ +|+|+..+    .||++|+...+.+-+       ..-.|..+.|+.+..-.. .+..    ..+|.+
T Consensus         6 ~~~al~~A~~~~kpvlv~f~a----~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~----~~~P~~   77 (82)
T PF13899_consen    6 YEEALAEAKKEGKPVLVDFGA----DWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR----QGYPTF   77 (82)
T ss_dssp             HHHHHHHHHHHTSEEEEEEET----TTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH----CSSSEE
T ss_pred             HHHHHHHHHHcCCCEEEEEEC----CCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC----ccCCEE
Confidence            444455544444 46666654    699999988876622       223455554443322222 2222    238888


Q ss_pred             ee
Q 030327          148 YI  149 (179)
Q Consensus       148 fI  149 (179)
                      ++
T Consensus        78 ~~   79 (82)
T PF13899_consen   78 FF   79 (82)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

...

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=96.19  E-value=0.021  Score=40.04  Aligned_cols=45  Identities=24%  Similarity=0.367  Sum_probs=28.9

Q ss_pred             CCCchHHHHHHHHHhc----C----CCeEEEEcCC-CHHHHHHHHHhcCCCCcceEee
Q 030327          101 PQCGFSHTVVQILKSL----N----APFETVNILE-NEMLRQGLKEYSSWPTFPQLYI  149 (179)
Q Consensus       101 p~Cp~C~~ak~lL~~~----g----v~y~~vdV~~-d~~~~~~L~~~sg~~tvP~VfI  149 (179)
                      +||++|++....+.+.    .    +.+..+|.+. ++.+.+    ..+...+|.+++
T Consensus        28 ~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~----~~~i~~~P~~~~   81 (105)
T cd02998          28 PWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAK----KYGVSGFPTLKF   81 (105)
T ss_pred             CCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHH----hCCCCCcCEEEE
Confidence            6999999888877442    2    3455566655 444433    346678998854

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=96.16  E-value=0.021  Score=44.82  Aligned_cols=42  Identities=14%  Similarity=0.173  Sum_probs=29.2

Q ss_pred             hhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc--------------CCCeEEEEcCCCH
Q 030327           84 VVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL--------------NAPFETVNILENE  129 (179)
Q Consensus        84 li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~--------------gv~y~~vdV~~d~  129 (179)
                      -.+...|+||...    .|||.|++....|.++              ++.+..|+++++.
T Consensus        22 ~~kgk~vlL~FwA----sWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~   77 (146)
T cd03008          22 RLENRVLLLFFGA----VVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSE   77 (146)
T ss_pred             HhCCCEEEEEEEC----CCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCH
Confidence            3456677777776    6999999999888651              3555666666553

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=96.15  E-value=0.052  Score=37.44  Aligned_cols=69  Identities=20%  Similarity=0.172  Sum_probs=48.9

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHH--hcCCCCcceEeeCCEEEeecHHHHHHH
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKE--YSSWPTFPQLYIEGEFFGGCDITVEAY  164 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~--~sg~~tvP~VfIdG~~IGG~del~~l~  164 (179)
                      .++|..     +..+.|.+++-+|.+.|++|+.+.++..++..+ +..  .....++|.+.+||..+.....+..+.
T Consensus         2 ~~Ly~~-----~~~~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~-~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~YL   72 (79)
T cd03077           2 PVLHYF-----NGRGRMESIRWLLAAAGVEFEEKFIESAEDLEK-LKKDGSLMFQQVPMVEIDGMKLVQTRAILNYI   72 (79)
T ss_pred             CEEEEe-----CCCChHHHHHHHHHHcCCCcEEEEeccHHHHHh-hccccCCCCCCCCEEEECCEEEeeHHHHHHHH
Confidence            356776     367889999999999999999888764332211 111  112558999999998888877777664

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=96.08  E-value=0.07  Score=40.37  Aligned_cols=72  Identities=22%  Similarity=0.205  Sum_probs=51.0

Q ss_pred             HHHhhhcCCcEEEEEeeCCCCCCCc---hHHHHHHHHHhc--CCCeEEEEcCCC-HHHHHHHHHhcCCC--CcceE--ee
Q 030327           80 TLDKVVTGNKVVLFMKGTKDFPQCG---FSHTVVQILKSL--NAPFETVNILEN-EMLRQGLKEYSSWP--TFPQL--YI  149 (179)
Q Consensus        80 ~l~~li~~~~Vvlysk~t~~~p~Cp---~C~~ak~lL~~~--gv~y~~vdV~~d-~~~~~~L~~~sg~~--tvP~V--fI  149 (179)
                      ..++.+..++.+|..-..+| |||+   .|+++..-+.+.  .|.+..||++.. +.....|.+..|-.  .+|+|  |.
T Consensus        10 nF~~~v~~~~~vlV~F~A~~-Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gyPTl~lF~   88 (116)
T cd03007          10 TFYKVIPKFKYSLVKFDTAY-PYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKESYPVIYLFH   88 (116)
T ss_pred             hHHHHHhcCCcEEEEEeCCC-CCCCChHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCCCCEEEEEe
Confidence            36778888887777776666 9999   999988666443  367888888532 22335677777877  89987  66


Q ss_pred             CCE
Q 030327          150 EGE  152 (179)
Q Consensus       150 dG~  152 (179)
                      +|+
T Consensus        89 ~g~   91 (116)
T cd03007          89 GGD   91 (116)
T ss_pred             CCC
Confidence            774

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=96.07  E-value=0.038  Score=41.08  Aligned_cols=65  Identities=22%  Similarity=0.302  Sum_probs=40.9

Q ss_pred             cCCcEEEEEeeCCCCCCCchHHHHHHHHHhc---------CCCeEEEEcCCCHH-H-------------------HHHHH
Q 030327           86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKSL---------NAPFETVNILENEM-L-------------------RQGLK  136 (179)
Q Consensus        86 ~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~---------gv~y~~vdV~~d~~-~-------------------~~~L~  136 (179)
                      ....|+||...    +||+.|++....|.+.         ++.+..++++.+.+ .                   ...+.
T Consensus        17 ~gk~vll~Fwa----~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (131)
T cd03009          17 EGKTVGLYFSA----SWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLN   92 (131)
T ss_pred             CCcEEEEEEEC----CCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHH
Confidence            34557777665    6999999877776432         34556667765532 1                   23445


Q ss_pred             HhcCCCCcceEee---CCEEE
Q 030327          137 EYSSWPTFPQLYI---EGEFF  154 (179)
Q Consensus       137 ~~sg~~tvP~VfI---dG~~I  154 (179)
                      +..|...+|.+++   +|+.+
T Consensus        93 ~~~~v~~~P~~~lid~~G~i~  113 (131)
T cd03009          93 RTFKIEGIPTLIILDADGEVV  113 (131)
T ss_pred             HHcCCCCCCEEEEECCCCCEE
Confidence            5567888998855   56544

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=95.98  E-value=0.018  Score=46.89  Aligned_cols=58  Identities=16%  Similarity=0.280  Sum_probs=38.2

Q ss_pred             EEEEEeeCCCCCCCchHHHHHH----HHHhcCCCeEEEEcCCCH-----H----HHHHHHHhcCC--CCcceEee---CC
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQ----ILKSLNAPFETVNILENE-----M----LRQGLKEYSSW--PTFPQLYI---EG  151 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~----lL~~~gv~y~~vdV~~d~-----~----~~~~L~~~sg~--~tvP~VfI---dG  151 (179)
                      +++|+.+     |||+|++...    +-+++|+.+.-|+++++.     .    -...+.+..|.  ..+|..|+   +|
T Consensus        73 lV~Fwas-----wCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G  147 (181)
T PRK13728         73 VVLFMQG-----HCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNT  147 (181)
T ss_pred             EEEEECC-----CCHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCC
Confidence            8888885     9999998854    445668887777776431     1    12334444563  58999876   56


Q ss_pred             E
Q 030327          152 E  152 (179)
Q Consensus       152 ~  152 (179)
                      +
T Consensus       148 ~  148 (181)
T PRK13728        148 L  148 (181)
T ss_pred             c
Confidence            4

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=95.98  E-value=0.046  Score=40.95  Aligned_cols=64  Identities=22%  Similarity=0.282  Sum_probs=40.0

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc---------CCCeEEEEcCCCHH---------------------HHHHHH
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL---------NAPFETVNILENEM---------------------LRQGLK  136 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~---------gv~y~~vdV~~d~~---------------------~~~~L~  136 (179)
                      ...|+|+...    +||+.|++....|++.         ++.+..++++.+++                     ..+.+.
T Consensus        17 Gk~vll~F~a----twC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~   92 (132)
T cd02964          17 GKTVGLYFSA----SWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLE   92 (132)
T ss_pred             CCEEEEEEEC----CCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHH
Confidence            4556666665    6999999877766432         34455666665431                     233455


Q ss_pred             HhcCCCCcceEe-eC--CEEE
Q 030327          137 EYSSWPTFPQLY-IE--GEFF  154 (179)
Q Consensus       137 ~~sg~~tvP~Vf-Id--G~~I  154 (179)
                      +..|...+|.++ ||  |+.+
T Consensus        93 ~~~~v~~iPt~~lid~~G~iv  113 (132)
T cd02964          93 KQFKVEGIPTLVVLKPDGDVV  113 (132)
T ss_pred             HHcCCCCCCEEEEECCCCCEE
Confidence            556778889886 44  5544

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]

Probab=95.94  E-value=0.0076  Score=49.31  Aligned_cols=67  Identities=18%  Similarity=0.211  Sum_probs=47.7

Q ss_pred             EEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee-CCEEEeecHHHHHHHH
Q 030327           92 LFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYI-EGEFFGGCDITVEAYK  165 (179)
Q Consensus        92 lysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI-dG~~IGG~del~~l~~  165 (179)
                      +|..+     .||||.+++.++.-+|++++..-++.|++. .-. .+-|..+||.+.- ||+.++..=++..+..
T Consensus         3 LYIYd-----HCPfcvrarmi~Gl~nipve~~vL~nDDe~-Tp~-rmiG~KqVPiL~Kedg~~m~ESlDIV~y~d   70 (215)
T COG2999           3 LYIYD-----HCPFCVRARMIFGLKNIPVELHVLLNDDEE-TPI-RMIGQKQVPILQKEDGRAMPESLDIVHYVD   70 (215)
T ss_pred             eeEec-----cChHHHHHHHHhhccCCChhhheeccCccc-Chh-hhhcccccceEEccccccchhhhHHHHHHH
Confidence            56664     799999999999999999887666544332 111 2348999999966 6788887656555443

>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait

Probab=95.85  E-value=0.023  Score=39.65  Aligned_cols=57  Identities=18%  Similarity=0.160  Sum_probs=44.1

Q ss_pred             CCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327          102 QCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus       102 ~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      ..++|.++.-+|+..|++|+.+++...+.       ......+|.+.+||+.|++..-+..+..
T Consensus        16 ~~~~~~kv~~~L~elglpye~~~~~~~~~-------~~P~GkVP~L~~dg~vI~eS~aIl~yL~   72 (74)
T cd03079          16 DNASCLAVQTFLKMCNLPFNVRCRANAEF-------MSPSGKVPFIRVGNQIVSEFGPIVQFVE   72 (74)
T ss_pred             CCCCHHHHHHHHHHcCCCcEEEecCCccc-------cCCCCcccEEEECCEEEeCHHHHHHHHh
Confidence            46789999999999999999986532111       1223679999999999999988887654

Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.

>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]

Probab=95.78  E-value=0.032  Score=47.99  Aligned_cols=74  Identities=26%  Similarity=0.389  Sum_probs=56.9

Q ss_pred             HHhhhcCCcEEEEEee-CCCCCC-CchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecH
Q 030327           81 LDKVVTGNKVVLFMKG-TKDFPQ-CGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCD  158 (179)
Q Consensus        81 l~~li~~~~Vvlysk~-t~~~p~-Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~d  158 (179)
                      .++-.+...|.+|.-. ++..|+ .|||-++--+|+..+++|+.++-        .++.++...++|-|-.||++|.+.|
T Consensus        37 hk~d~kkD~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~--------~~~~rSr~G~lPFIELNGe~iaDS~  108 (281)
T KOG4244|consen   37 HKTDYKKDTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDC--------SLKRRSRNGTLPFIELNGEHIADSD  108 (281)
T ss_pred             hhhccccCeEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccc--------cceeeccCCCcceEEeCCeeccccH
Confidence            3345566778888775 333333 57999999999999999998875        2335667889999999999999998


Q ss_pred             HHHH
Q 030327          159 ITVE  162 (179)
Q Consensus       159 el~~  162 (179)
                      .+..
T Consensus       109 ~I~~  112 (281)
T KOG4244|consen  109 LIED  112 (281)
T ss_pred             HHHH
Confidence            6554

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=95.76  E-value=0.038  Score=38.75  Aligned_cols=55  Identities=18%  Similarity=0.392  Sum_probs=32.8

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcC--------CCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CCE
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLN--------APFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGE  152 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~g--------v~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG~  152 (179)
                      .++|+..+    +||++|+.....|++..        +.+..+|.+.++ +    ....+...+|.+++  +|+
T Consensus        20 ~~~v~f~~----~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~----~~~~~~~~~Pt~~~~~~~~   84 (104)
T cd02995          20 DVLVEFYA----PWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAND-V----PSEFVVDGFPTILFFPAGD   84 (104)
T ss_pred             cEEEEEEC----CCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchh-h----hhhccCCCCCEEEEEcCCC
Confidence            45554444    69999999888775542        345566665542 2    22234468887743  454

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.74  E-value=0.035  Score=44.63  Aligned_cols=71  Identities=15%  Similarity=0.192  Sum_probs=56.3

Q ss_pred             EEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCH-HHHHHHHHhcCCCCcceEeeCCE-EEeecHHHHHHHHc
Q 030327           91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENE-MLRQGLKEYSSWPTFPQLYIEGE-FFGGCDITVEAYKN  166 (179)
Q Consensus        91 vlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~-~~~~~L~~~sg~~tvP~VfIdG~-~IGG~del~~l~~~  166 (179)
                      .+|..     +.+|+|.++.-.|.++|++|+.+.|+... ....++.+++...+||.+..+|- .+-....|.++.++
T Consensus         2 ~L~~~-----~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL~~   74 (211)
T COG0625           2 KLYGS-----PTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLAE   74 (211)
T ss_pred             eeecC-----CCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHHHh
Confidence            35555     47799999999999999999999987653 55577888888999999998875 67777777766544

>PLN02309 5'-adenylylsulfate reductase

Probab=95.69  E-value=0.034  Score=51.19  Aligned_cols=58  Identities=12%  Similarity=0.287  Sum_probs=35.3

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhc-------CCCeEEEEcC-CCHHHHHHHHHhcCCCCcceE--eeCCE
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNIL-ENEMLRQGLKEYSSWPTFPQL--YIEGE  152 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-------gv~y~~vdV~-~d~~~~~~L~~~sg~~tvP~V--fIdG~  152 (179)
                      ..++|+...    |||++|+.+...+.++       ++.+-.+|++ .+.++   ..+..+...+|.+  |.+|.
T Consensus       366 k~vlV~FyA----pWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~l---a~~~~~I~~~PTil~f~~g~  433 (457)
T PLN02309        366 EPWLVVLYA----PWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEF---AKQELQLGSFPTILLFPKNS  433 (457)
T ss_pred             CeEEEEEEC----CCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHH---HHhhCCCceeeEEEEEeCCC
Confidence            334444443    7999999988888554       3556777776 43333   2223456677777  44553

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=95.61  E-value=0.053  Score=43.57  Aligned_cols=66  Identities=17%  Similarity=0.302  Sum_probs=41.6

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHh--cCCCeEEEEc--CC---------------CH--HH----------------
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKS--LNAPFETVNI--LE---------------NE--ML----------------  131 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~--~gv~y~~vdV--~~---------------d~--~~----------------  131 (179)
                      .|++|+.     +.||||+++.+.+.+  .++.+..+.+  ..               |+  .+                
T Consensus        80 ~i~~f~D-----~~Cp~C~~~~~~l~~~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~~  154 (197)
T cd03020          80 VVYVFTD-----PDCPYCRKLEKELKPNADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAASC  154 (197)
T ss_pred             EEEEEEC-----CCCccHHHHHHHHhhccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCcccc
Confidence            4666666     799999999999974  3454444433  11               00  00                


Q ss_pred             ------HHHHHHhcCCCCcceEee-CCEEEeecHH
Q 030327          132 ------RQGLKEYSSWPTFPQLYI-EGEFFGGCDI  159 (179)
Q Consensus       132 ------~~~L~~~sg~~tvP~VfI-dG~~IGG~de  159 (179)
                            ...+.+..|...+|.+++ ||+.+.|+..
T Consensus       155 ~~~i~~~~~l~~~~gi~gtPtii~~~G~~~~G~~~  189 (197)
T cd03020         155 DNPVAANLALGRQLGVNGTPTIVLADGRVVPGAPP  189 (197)
T ss_pred             CchHHHHHHHHHHcCCCcccEEEECCCeEecCCCC
Confidence                  112233347788999888 5899988764

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=95.58  E-value=0.06  Score=49.67  Aligned_cols=60  Identities=12%  Similarity=0.209  Sum_probs=37.4

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc-------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCE
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGE  152 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~  152 (179)
                      ...|+|+...    |||++|+.+...|++.       ++.+..+|++.++.  +......+...+|.+  |.+|.
T Consensus       371 ~k~VLV~FyA----pWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~--~~~~~~~~I~~~PTii~Fk~g~  439 (463)
T TIGR00424       371 KEAWLVVLYA----PWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQK--EFAKQELQLGSFPTILFFPKHS  439 (463)
T ss_pred             CCeEEEEEEC----CCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCcc--HHHHHHcCCCccceEEEEECCC
Confidence            3345555554    7999999998887543       35677788876532  122223355677776  55663

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=95.55  E-value=0.047  Score=46.68  Aligned_cols=71  Identities=13%  Similarity=0.286  Sum_probs=53.2

Q ss_pred             CHHHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHH----HhcCCCeEEEEcCCC--HH-----HHHHHHHhcCCC
Q 030327           74 TPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQIL----KSLNAPFETVNILEN--EM-----LRQGLKEYSSWP  142 (179)
Q Consensus        74 ~~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL----~~~gv~y~~vdV~~d--~~-----~~~~L~~~sg~~  142 (179)
                      ..+.+..++++.+...+++|..+     .|++|.+...+|    +++|++...|++|..  +.     .-..+.+..|..
T Consensus       138 ~~~~~~~i~~la~~~gL~fFy~~-----~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~  212 (256)
T TIGR02739       138 KEQKEKAIQQLSQSYGLFFFYRG-----KSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVK  212 (256)
T ss_pred             HHHHHHHHHHHHhceeEEEEECC-----CCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCc
Confidence            44557788889999999999997     899999888777    567999999998753  11     112334444777


Q ss_pred             CcceEee
Q 030327          143 TFPQLYI  149 (179)
Q Consensus       143 tvP~VfI  149 (179)
                      .+|.+|+
T Consensus       213 ~~Pal~L  219 (256)
T TIGR02739       213 YFPALYL  219 (256)
T ss_pred             cCceEEE
Confidence            8999976

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]

Probab=95.42  E-value=0.046  Score=45.61  Aligned_cols=63  Identities=19%  Similarity=0.289  Sum_probs=50.4

Q ss_pred             CCCchHHHHHHHHHhcCCCe--EEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHc
Q 030327          101 PQCGFSHTVVQILKSLNAPF--ETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKN  166 (179)
Q Consensus       101 p~Cp~C~~ak~lL~~~gv~y--~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~  166 (179)
                      ..||||+++...|...+++|  ..||+..-+   +.++..++...+|.|-.||+.+-..+.+.+..++
T Consensus        19 Gdcpf~qr~~m~L~~k~~~f~vttVd~~~kp---~~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~Lee   83 (221)
T KOG1422|consen   19 GDCPFCQRLFMTLELKGVPFKVTTVDLSRKP---EWFLDISPGGKPPVLKFDEKWVTDSDKIEEFLEE   83 (221)
T ss_pred             CCChhHHHHHHHHHHcCCCceEEEeecCCCc---HHHHhhCCCCCCCeEEeCCceeccHHHHHHHHHH
Confidence            47999999999999999876  556664444   3566778888999999999999999888776543

>PRK10357 putative glutathione S-transferase; Provisional

Probab=95.41  E-value=0.049  Score=43.32  Aligned_cols=69  Identities=25%  Similarity=0.306  Sum_probs=50.3

Q ss_pred             EEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee-CCEEEeecHHHHHHHH
Q 030327           91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYI-EGEFFGGCDITVEAYK  165 (179)
Q Consensus        91 vlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI-dG~~IGG~del~~l~~  165 (179)
                      .+|+.     +.|+++++++-+|..+|++|+.++++.... ...+.+++...++|.+.. ||..+-....+.++.+
T Consensus         2 ~Ly~~-----~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~-~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~   71 (202)
T PRK10357          2 KLIGS-----YTSPFVRKISILLLEKGITFEFVNELPYNA-DNGVAQYNPLGKVPALVTEEGECWFDSPIIAEYIE   71 (202)
T ss_pred             eeecC-----CCCchHHHHHHHHHHcCCCCeEEecCCCCC-chhhhhcCCccCCCeEEeCCCCeeecHHHHHHHHH
Confidence            46666     479999999999999999999988754211 134445677889999984 6777776666665443

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=95.37  E-value=0.06  Score=45.87  Aligned_cols=70  Identities=17%  Similarity=0.311  Sum_probs=50.9

Q ss_pred             HHHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHH----HhcCCCeEEEEcCC--CHH-----HHHHHHHhcCCCC
Q 030327           75 PELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQIL----KSLNAPFETVNILE--NEM-----LRQGLKEYSSWPT  143 (179)
Q Consensus        75 ~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL----~~~gv~y~~vdV~~--d~~-----~~~~L~~~sg~~t  143 (179)
                      .+.+..++++.+...++.|..+     .||+|.+.-.+|    +++|+++.-|.+|.  .+.     .-....+..|...
T Consensus       132 ~~~~~~i~~la~~~GL~fFy~s-----~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~  206 (248)
T PRK13703        132 AQQRQAIAKLAEHYGLMFFYRG-----QDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKY  206 (248)
T ss_pred             HHHHHHHHHHHhcceEEEEECC-----CCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcc
Confidence            3446678888899999999997     899999877777    55688888888864  111     1122334457788


Q ss_pred             cceEee
Q 030327          144 FPQLYI  149 (179)
Q Consensus       144 vP~VfI  149 (179)
                      +|.+|+
T Consensus       207 ~PAl~L  212 (248)
T PRK13703        207 FPALML  212 (248)
T ss_pred             cceEEE
Confidence            999976

>PLN02395 glutathione S-transferase

Probab=95.36  E-value=0.079  Score=42.43  Aligned_cols=71  Identities=11%  Similarity=0.043  Sum_probs=54.5

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC--HHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHc
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN--EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKN  166 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d--~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~  166 (179)
                      +.||..     +.| .+.+++-+|.++|++|+.+.++..  +....++.+.+-..++|.+..+|..+.....+.++..+
T Consensus         3 ~~ly~~-----~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL~~   75 (215)
T PLN02395          3 LKVYGP-----AFA-SPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVDGDYKIFESRAIMRYYAE   75 (215)
T ss_pred             EEEEcC-----CcC-cHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHH
Confidence            578874     354 489999999999999998887532  23335677778888999999999888888887776553

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=95.28  E-value=0.071  Score=41.97  Aligned_cols=59  Identities=14%  Similarity=0.348  Sum_probs=37.2

Q ss_pred             cCCcEEEEEeeCCCCCCCchHHHHHHHHHh----cCCCeEEEEcCCCHH---------HHHHHHHhc---CCCCcceEee
Q 030327           86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKS----LNAPFETVNILENEM---------LRQGLKEYS---SWPTFPQLYI  149 (179)
Q Consensus        86 ~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~----~gv~y~~vdV~~d~~---------~~~~L~~~s---g~~tvP~VfI  149 (179)
                      .+..++.|..+     ||++|++....|++    +++.+..++++++..         ..+.+....   +...+|..|+
T Consensus        50 ~~~~lvnFWAs-----WCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~L  124 (153)
T TIGR02738        50 DDYALVFFYQS-----TCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFL  124 (153)
T ss_pred             CCCEEEEEECC-----CChhHHHHHHHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEE
Confidence            34557777774     99999998888854    467777777765320         012223333   4568898855

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional

Probab=95.17  E-value=0.12  Score=41.75  Aligned_cols=70  Identities=11%  Similarity=0.135  Sum_probs=51.4

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCC--CHHHHHHHHHhcCCCCcceEee-----CCE--EEeecHHH
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE--NEMLRQGLKEYSSWPTFPQLYI-----EGE--FFGGCDIT  160 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~--d~~~~~~L~~~sg~~tvP~VfI-----dG~--~IGG~del  160 (179)
                      +.+|..      .+++|.++.-+|.++|++|+.++|+-  ++....++.+++-..++|.+..     ||+  .+-....+
T Consensus         2 ~~Ly~~------~~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI   75 (215)
T PRK13972          2 IDLYFA------PTPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAI   75 (215)
T ss_pred             eEEEEC------CCCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHH
Confidence            457765      36899999999999999999888753  3333456778888889999987     452  46666666


Q ss_pred             HHHHH
Q 030327          161 VEAYK  165 (179)
Q Consensus       161 ~~l~~  165 (179)
                      .++.+
T Consensus        76 ~~YL~   80 (215)
T PRK13972         76 LLYLA   80 (215)
T ss_pred             HHHHH
Confidence            66544

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=95.13  E-value=0.11  Score=40.14  Aligned_cols=64  Identities=20%  Similarity=0.366  Sum_probs=37.4

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc-------CCCeEEEEcCCCHH-HH-----------------HHHHHhcCC
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNILENEM-LR-----------------QGLKEYSSW  141 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-------gv~y~~vdV~~d~~-~~-----------------~~L~~~sg~  141 (179)
                      ...++|+...    +||++|+.....|.+.       ++.+-.++.+.+++ .+                 ..+.+..|.
T Consensus        61 ~k~~~l~f~a----~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  136 (173)
T PRK03147         61 GKGVFLNFWG----TWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGV  136 (173)
T ss_pred             CCEEEEEEEC----CcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCC
Confidence            4445555554    6999999866555332       35566666655432 21                 244445577


Q ss_pred             CCcceEe-e--CCEEE
Q 030327          142 PTFPQLY-I--EGEFF  154 (179)
Q Consensus       142 ~tvP~Vf-I--dG~~I  154 (179)
                      ..+|.+| |  +|+.+
T Consensus       137 ~~~P~~~lid~~g~i~  152 (173)
T PRK03147        137 GPLPTTFLIDKDGKVV  152 (173)
T ss_pred             CCcCeEEEECCCCcEE
Confidence            7889754 5  47655

>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi

Probab=95.13  E-value=0.078  Score=36.45  Aligned_cols=57  Identities=23%  Similarity=0.227  Sum_probs=44.6

Q ss_pred             CCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHc
Q 030327          102 QCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKN  166 (179)
Q Consensus       102 ~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~  166 (179)
                      .+|+|-++..+|+-.|++|+.+.. .|+.       .+....+|.|..+|+.|+|++.+.++.++
T Consensus        15 ~sp~clk~~~~Lr~~~~~~~v~~~-~n~~-------~sp~gkLP~l~~~~~~i~d~~~Ii~~L~~   71 (73)
T cd03078          15 VDPECLAVLAYLKFAGAPLKVVPS-NNPW-------RSPTGKLPALLTSGTKISGPEKIIEYLRK   71 (73)
T ss_pred             CCHHHHHHHHHHHcCCCCEEEEec-CCCC-------CCCCCccCEEEECCEEecChHHHHHHHHH
Confidence            579999999999999999976533 2221       22345699999999999999999887543

Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=95.08  E-value=0.33  Score=36.23  Aligned_cols=72  Identities=15%  Similarity=0.324  Sum_probs=50.3

Q ss_pred             HHHhhhc---CCcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcC-CCCcceEe-
Q 030327           80 TLDKVVT---GNKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSS-WPTFPQLY-  148 (179)
Q Consensus        80 ~l~~li~---~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg-~~tvP~Vf-  148 (179)
                      .++++++   ..+++||--+    ..||=+..|.+-|++.      ++++.++||.++.++-+++.+.+| ...-||++ 
T Consensus         9 ql~~i~~~S~~~~~~iFKHS----t~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~il   84 (105)
T PF11009_consen    9 QLEEILEESKEKPVLIFKHS----TRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVIL   84 (105)
T ss_dssp             HHHHHHHH---SEEEEEEE-----TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEE
T ss_pred             HHHHHHHhcccCcEEEEEeC----CCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEE
Confidence            3444444   5778888888    4899999999887553      289999999999999999999888 45679884 


Q ss_pred             -eCCEEEe
Q 030327          149 -IEGEFFG  155 (179)
Q Consensus       149 -IdG~~IG  155 (179)
                       -||+.+-
T Consensus        85 i~~g~~v~   92 (105)
T PF11009_consen   85 IKNGKVVW   92 (105)
T ss_dssp             EETTEEEE
T ss_pred             EECCEEEE
Confidence             4888774

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=94.90  E-value=0.22  Score=39.96  Aligned_cols=64  Identities=16%  Similarity=0.225  Sum_probs=37.8

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHH----HhcCCCeEEEEcCCCHHHHHHHH----------------HhcCCCCcce
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQIL----KSLNAPFETVNILENEMLRQGLK----------------EYSSWPTFPQ  146 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL----~~~gv~y~~vdV~~d~~~~~~L~----------------~~sg~~tvP~  146 (179)
                      .+.++||...    +|||.|++....+    ++.++++..+..++.++.++.++                +.+|...+|.
T Consensus        74 gk~vvl~F~a----twCp~C~~~lp~l~~~~~~~~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~  149 (189)
T TIGR02661        74 GRPTLLMFTA----PSCPVCDKLFPIIKSIARAEETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPY  149 (189)
T ss_pred             CCEEEEEEEC----CCChhHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccce
Confidence            4456665554    6999999876655    44466766666443333333332                2235567897


Q ss_pred             Eee---CCEEE
Q 030327          147 LYI---EGEFF  154 (179)
Q Consensus       147 VfI---dG~~I  154 (179)
                      .|+   +|+.+
T Consensus       150 ~~lID~~G~I~  160 (189)
T TIGR02661       150 GVLLDQDGKIR  160 (189)
T ss_pred             EEEECCCCeEE
Confidence            766   46654

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=94.89  E-value=0.16  Score=36.48  Aligned_cols=58  Identities=17%  Similarity=0.360  Sum_probs=30.9

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhcC----CCeEEEEc-CCCHHHHHHHHHhcCCCCcceEe
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLN----APFETVNI-LENEMLRQGLKEYSSWPTFPQLY  148 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~g----v~y~~vdV-~~d~~~~~~L~~~sg~~tvP~Vf  148 (179)
                      ...++|+..+    +||+.|++....|+++.    -.+..+-+ +.+.+..+.+.+..+...+|.++
T Consensus        21 gk~vvl~F~~----~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~   83 (114)
T cd02967          21 GRPTLLFFLS----PTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVL   83 (114)
T ss_pred             CCeEEEEEEC----CCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEe
Confidence            4456666555    69999998887776542    12222322 23333333333333444567654

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=94.87  E-value=0.22  Score=39.25  Aligned_cols=41  Identities=20%  Similarity=0.286  Sum_probs=27.5

Q ss_pred             hhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc---CCCeEEEEcCCC
Q 030327           84 VVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL---NAPFETVNILEN  128 (179)
Q Consensus        84 li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~---gv~y~~vdV~~d  128 (179)
                      ..+...+++|...    .||+.|++....|++.   ++.+-.+++++.
T Consensus        60 ~~~gk~vll~F~a----~wC~~C~~~~p~l~~l~~~~~~vi~V~~~~~  103 (173)
T TIGR00385        60 FIQGKPVLLNVWA----SWCPPCRAEHPYLNELAKDGLPIVGVDYKDQ  103 (173)
T ss_pred             hcCCCEEEEEEEC----CcCHHHHHHHHHHHHHHHcCCEEEEEECCCC
Confidence            3345566666665    6999999887777554   666667776543

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=94.83  E-value=0.13  Score=45.47  Aligned_cols=66  Identities=18%  Similarity=0.364  Sum_probs=41.5

Q ss_pred             HHHhhhcCCc-EEEEEeeCCCCCCCchHHHHHHHHHh-------cC--CCeEEEEcCCCHHHHHHHHHhcCCCCcceE--
Q 030327           80 TLDKVVTGNK-VVLFMKGTKDFPQCGFSHTVVQILKS-------LN--APFETVNILENEMLRQGLKEYSSWPTFPQL--  147 (179)
Q Consensus        80 ~l~~li~~~~-Vvlysk~t~~~p~Cp~C~~ak~lL~~-------~g--v~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--  147 (179)
                      .++++++.++ ++|+...    +||++|++....+.+       .+  +.+..+|.+.+.++    .+..|...+|.+  
T Consensus        10 ~~~~~i~~~~~~~v~f~a----~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l----~~~~~i~~~Pt~~~   81 (462)
T TIGR01130        10 NFDDFIKSHEFVLVEFYA----PWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDL----AQKYGVSGYPTLKI   81 (462)
T ss_pred             HHHHHHhcCCCEEEEEEC----CCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHH----HHhCCCccccEEEE
Confidence            3455555655 4444443    799999988766543       33  66777777766544    344466778877  


Q ss_pred             eeCCEE
Q 030327          148 YIEGEF  153 (179)
Q Consensus       148 fIdG~~  153 (179)
                      |.+|+.
T Consensus        82 ~~~g~~   87 (462)
T TIGR01130        82 FRNGED   87 (462)
T ss_pred             EeCCcc
Confidence            556765

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins

Probab=94.77  E-value=0.14  Score=39.20  Aligned_cols=56  Identities=21%  Similarity=0.251  Sum_probs=39.0

Q ss_pred             HHHHHHHHhcCCCeEEEEcCCC-------HHHHHHHHHhcCCCCcceEeeCCEEE--eec---HHHHHH
Q 030327          107 HTVVQILKSLNAPFETVNILEN-------EMLRQGLKEYSSWPTFPQLYIEGEFF--GGC---DITVEA  163 (179)
Q Consensus       107 ~~ak~lL~~~gv~y~~vdV~~d-------~~~~~~L~~~sg~~tvP~VfIdG~~I--GG~---del~~l  163 (179)
                      ..+.++|++.|++++.+|+..+       +.+++.|... |...+|.++|||+.+  |.|   +++.++
T Consensus        30 a~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~-G~e~LPitlVdGeiv~~G~YPt~eEl~~~   97 (123)
T PF06953_consen   30 AADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQTE-GAEALPITLVDGEIVKTGRYPTNEELAEW   97 (123)
T ss_dssp             HHHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHHH--GGG-SEEEETTEEEEESS---HHHHHHH
T ss_pred             HHHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHHc-CcccCCEEEECCEEEEecCCCCHHHHHHH
Confidence            3677888999999999999764       5566666654 889999999999887  555   444444

ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.

>PRK11752 putative S-transferase; Provisional

Probab=94.72  E-value=0.14  Score=43.30  Aligned_cols=76  Identities=16%  Similarity=0.135  Sum_probs=56.7

Q ss_pred             hhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcC--CCHHHHHHHHHhcCCCCcceEeeCC----
Q 030327           84 VVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNIL--ENEMLRQGLKEYSSWPTFPQLYIEG----  151 (179)
Q Consensus        84 li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~--~d~~~~~~L~~~sg~~tvP~VfIdG----  151 (179)
                      ....+.+.+|+.      .+++|.+|.-+|.++      |++|+.+.|+  ..+....++.+..-..++|++..++    
T Consensus        39 ~~~~~~~~Ly~~------~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~  112 (264)
T PRK11752         39 PVGKHPLQLYSL------GTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSGNPP  112 (264)
T ss_pred             CCCCCCeEEecC------CCCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCCCCCC
Confidence            455668999986      599999999999997      8889887764  2233345677787888999998752    


Q ss_pred             EEEeecHHHHHHHH
Q 030327          152 EFFGGCDITVEAYK  165 (179)
Q Consensus       152 ~~IGG~del~~l~~  165 (179)
                      ..+.....+.++..
T Consensus       113 ~~L~ES~AIl~YL~  126 (264)
T PRK11752        113 IRVFESGAILLYLA  126 (264)
T ss_pred             eEEEcHHHHHHHHH
Confidence            46777777776554

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=94.62  E-value=0.17  Score=38.49  Aligned_cols=74  Identities=12%  Similarity=0.203  Sum_probs=36.6

Q ss_pred             HHHHHHHhhhcC-CcEEEEEeeC---CCCCCCchHHHHHHHHHh----c--CCCeEEEEcCCCHHHHH---HHHH--hcC
Q 030327           76 ELKSTLDKVVTG-NKVVLFMKGT---KDFPQCGFSHTVVQILKS----L--NAPFETVNILENEMLRQ---GLKE--YSS  140 (179)
Q Consensus        76 ~~~~~l~~li~~-~~Vvlysk~t---~~~p~Cp~C~~ak~lL~~----~--gv~y~~vdV~~d~~~~~---~L~~--~sg  140 (179)
                      +..+.+++..+. .++.||..++   .-..|||.|.++..++++    .  +..+.++.|..-++.++   .++.  ...
T Consensus         7 ~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~   86 (119)
T PF06110_consen    7 EFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLK   86 (119)
T ss_dssp             HHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC-
T ss_pred             HHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceee
Confidence            345556654433 5666666654   356899999999876644    2  33466667743222221   2232  234


Q ss_pred             CCCcceEee
Q 030327          141 WPTFPQLYI  149 (179)
Q Consensus       141 ~~tvP~VfI  149 (179)
                      -..+|.+.-
T Consensus        87 l~~IPTLi~   95 (119)
T PF06110_consen   87 LKGIPTLIR   95 (119)
T ss_dssp             --SSSEEEE
T ss_pred             eeecceEEE
Confidence            567999853

; PDB: 1V9W_A 1WOU_A.

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=94.61  E-value=0.31  Score=35.80  Aligned_cols=38  Identities=21%  Similarity=0.317  Sum_probs=24.0

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc----CCCeEEEEcCCC
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL----NAPFETVNILEN  128 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~----gv~y~~vdV~~d  128 (179)
                      ...++|+..+    .||+.|......|+++    ++.+..++++++
T Consensus        25 gk~vvv~F~a----~~C~~C~~~~~~l~~l~~~~~~~vv~v~~~~~   66 (127)
T cd03010          25 GKPYLLNVWA----SWCAPCREEHPVLMALARQGRVPIYGINYKDN   66 (127)
T ss_pred             CCEEEEEEEc----CcCHHHHHHHHHHHHHHHhcCcEEEEEECCCC
Confidence            4445555555    5999999888877554    355555555433

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=94.61  E-value=0.18  Score=36.82  Aligned_cols=74  Identities=11%  Similarity=0.148  Sum_probs=43.7

Q ss_pred             HHHHHHHhhhcCCc-EEEEEeeCCCCCCCchHHHHHH-HHHhcC------CCeEEEEcCCC-HHHHHHHHHhcCCCCcce
Q 030327           76 ELKSTLDKVVTGNK-VVLFMKGTKDFPQCGFSHTVVQ-ILKSLN------APFETVNILEN-EMLRQGLKEYSSWPTFPQ  146 (179)
Q Consensus        76 ~~~~~l~~li~~~~-Vvlysk~t~~~p~Cp~C~~ak~-lL~~~g------v~y~~vdV~~d-~~~~~~L~~~sg~~tvP~  146 (179)
                      +.++.+++..++++ ++||..+    +||++|+...+ +|....      -.|..+-++.+ ++. ..+....+...+|.
T Consensus         5 s~~~a~~~Ak~~~K~llv~~~~----~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~-~~~~~~~~~~~~P~   79 (114)
T cd02958           5 SFEDAKQEAKSEKKWLLVYLQS----EDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEG-QRFLQSYKVDKYPH   79 (114)
T ss_pred             CHHHHHHHHHhhCceEEEEEec----CCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccH-HHHHHHhCccCCCe
Confidence            34555555555544 7777776    79999998754 453322      23544444332 333 34555567788998


Q ss_pred             E-ee---CCEEE
Q 030327          147 L-YI---EGEFF  154 (179)
Q Consensus       147 V-fI---dG~~I  154 (179)
                      + |+   +|+.+
T Consensus        80 ~~~i~~~~g~~l   91 (114)
T cd02958          80 IAIIDPRTGEVL   91 (114)
T ss_pred             EEEEeCccCcEe
Confidence            8 44   46555

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=94.58  E-value=0.22  Score=39.71  Aligned_cols=47  Identities=21%  Similarity=0.197  Sum_probs=30.5

Q ss_pred             cCCcEEEEEeeCCCCCCCchHHHHHHHHHhc---CCCeEEEEcCCCHH-HHHHHH
Q 030327           86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKSL---NAPFETVNILENEM-LRQGLK  136 (179)
Q Consensus        86 ~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~---gv~y~~vdV~~d~~-~~~~L~  136 (179)
                      +...++|+...    .||++|++....|+++   ++.+..++++++.+ +++.++
T Consensus        67 ~gk~vvv~Fwa----twC~~C~~e~p~l~~l~~~~~~vi~v~~~~~~~~~~~~~~  117 (185)
T PRK15412         67 QGKPVLLNVWA----TWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWLK  117 (185)
T ss_pred             CCCEEEEEEEC----CCCHHHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHHH
Confidence            45556665554    5999999887776554   67777777766543 444433

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=94.45  E-value=0.26  Score=37.04  Aligned_cols=49  Identities=18%  Similarity=0.182  Sum_probs=34.4

Q ss_pred             hcCCcEEEEEeeCCCCC-CCchHHHHHHHHHh-------cCCCeEEEEcCCCHHHHHHHHH
Q 030327           85 VTGNKVVLFMKGTKDFP-QCGFSHTVVQILKS-------LNAPFETVNILENEMLRQGLKE  137 (179)
Q Consensus        85 i~~~~Vvlysk~t~~~p-~Cp~C~~ak~lL~~-------~gv~y~~vdV~~d~~~~~~L~~  137 (179)
                      .+..+++|+...    . |||.|......|++       .++.+..+..+.++.+++.+.+
T Consensus        26 ~~gk~~vv~f~~----~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~   82 (146)
T PF08534_consen   26 FKGKPVVVNFWA----SAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKK   82 (146)
T ss_dssp             GTTSEEEEEEES----TTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHH
T ss_pred             hCCCeEEEEEEc----cCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHh
Confidence            445666666665    5 99999977755533       4577888888888777666665

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=94.37  E-value=0.13  Score=36.23  Aligned_cols=52  Identities=21%  Similarity=0.218  Sum_probs=34.6

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCC--CcceEee
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWP--TFPQLYI  149 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~--tvP~VfI  149 (179)
                      -+++|..     +||+.|+.++..|++.      .+.|..+|+++++++    .+..|-.  .+|++.+
T Consensus        15 ~~~~f~~-----~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~----~~~~~i~~~~~P~~~~   74 (103)
T cd02982          15 LLVLFYN-----KDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRH----LEYFGLKEEDLPVIAI   74 (103)
T ss_pred             EEEEEEc-----CChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHH----HHHcCCChhhCCEEEE
Confidence            3444554     5999999999998664      256777777665443    3334555  8898854

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=94.18  E-value=0.35  Score=33.56  Aligned_cols=45  Identities=27%  Similarity=0.350  Sum_probs=26.4

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhc--------CCCeEEEEcCCC-HHHHHHHHHh
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSL--------NAPFETVNILEN-EMLRQGLKEY  138 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~--------gv~y~~vdV~~d-~~~~~~L~~~  138 (179)
                      ++||..+    +||+.|.+....|.++        ++.+..|.++++ ++.++.+++.
T Consensus         4 ~ll~fwa----~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~   57 (95)
T PF13905_consen    4 VLLYFWA----SWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKN   57 (95)
T ss_dssp             EEEEEE-----TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTC
T ss_pred             EEEEEEC----CCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhc
Confidence            4555554    5999999888877543        334556666665 4444444443

...

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=94.14  E-value=0.13  Score=34.83  Aligned_cols=30  Identities=20%  Similarity=0.289  Sum_probs=21.3

Q ss_pred             EEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEc
Q 030327           91 VLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNI  125 (179)
Q Consensus        91 vlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV  125 (179)
                      ++|..     +.||+|..+...|.+.      ++.+..+.+
T Consensus         2 ~~f~d-----~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~   37 (98)
T cd02972           2 VEFFD-----PLCPYCYLFEPELEKLLYADDGGVRVVYRPF   37 (98)
T ss_pred             eEEEC-----CCCHhHHhhhHHHHHHHhhcCCcEEEEEecc
Confidence            45555     6999999999988774      345555554

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>PTZ00102 disulphide isomerase; Provisional

Probab=94.05  E-value=0.24  Score=44.52  Aligned_cols=65  Identities=22%  Similarity=0.365  Sum_probs=38.8

Q ss_pred             HHhhhcCCc-EEEEEeeCCCCCCCchHHHHHHHHHh-------c--CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--e
Q 030327           81 LDKVVTGNK-VVLFMKGTKDFPQCGFSHTVVQILKS-------L--NAPFETVNILENEMLRQGLKEYSSWPTFPQL--Y  148 (179)
Q Consensus        81 l~~li~~~~-Vvlysk~t~~~p~Cp~C~~ak~lL~~-------~--gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--f  148 (179)
                      ++++++.++ ++|+...    +||++|+++...+.+       .  ++.+..+|.+.+.++.    +..|...+|.+  |
T Consensus        42 f~~~i~~~~~~lv~f~a----~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~----~~~~i~~~Pt~~~~  113 (477)
T PTZ00102         42 FDKFITENEIVLVKFYA----PWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELA----QEFGVRGYPTIKFF  113 (477)
T ss_pred             HHHHHhcCCcEEEEEEC----CCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHH----HhcCCCcccEEEEE
Confidence            444444443 4444443    799999988765432       2  2557777777766543    33456677876  4


Q ss_pred             eCCEE
Q 030327          149 IEGEF  153 (179)
Q Consensus       149 IdG~~  153 (179)
                      -+|+.
T Consensus       114 ~~g~~  118 (477)
T PTZ00102        114 NKGNP  118 (477)
T ss_pred             ECCce
Confidence            46653

>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione

Probab=93.98  E-value=0.28  Score=33.45  Aligned_cols=60  Identities=13%  Similarity=0.120  Sum_probs=45.3

Q ss_pred             hHHHHHHHHHhcCCCeEEEEcC--CCHHHHHHHHHhcCC-CCcceEeeC-CEEEeecHHHHHHH
Q 030327          105 FSHTVVQILKSLNAPFETVNIL--ENEMLRQGLKEYSSW-PTFPQLYIE-GEFFGGCDITVEAY  164 (179)
Q Consensus       105 ~C~~ak~lL~~~gv~y~~vdV~--~d~~~~~~L~~~sg~-~tvP~VfId-G~~IGG~del~~l~  164 (179)
                      .|..++-+|+..|++|+.+.++  .++...+++++..-. ..+|.+..+ |..+...-.+..+.
T Consensus        11 ~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YL   74 (76)
T PF02798_consen   11 RSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYL   74 (76)
T ss_dssp             TTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHH
T ss_pred             chHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHh
Confidence            8899999999999999888765  333333666766666 899999999 99988877776654

The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....

>PTZ00057 glutathione s-transferase; Provisional

Probab=93.80  E-value=0.48  Score=38.05  Aligned_cols=71  Identities=17%  Similarity=0.249  Sum_probs=51.9

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHH-H--HHHHH--HhcCCCCcceEeeCCEEEeecHHHHHH
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEM-L--RQGLK--EYSSWPTFPQLYIEGEFFGGCDITVEA  163 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~-~--~~~L~--~~sg~~tvP~VfIdG~~IGG~del~~l  163 (179)
                      .++||...     ..+.+..++-+|...|++|+.+.+.+..+ .  .++++  ..+-...+|.+.+||..+.....+..+
T Consensus         4 ~~~L~y~~-----~~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~Y   78 (205)
T PTZ00057          4 EIVLYYFD-----ARGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVRY   78 (205)
T ss_pred             ceEEEecC-----CCcchHHHHHHHHHcCCCeEEEeccccchHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHHH
Confidence            47788773     57789999999999999999998754322 1  11222  245678999999999888887776665


Q ss_pred             H
Q 030327          164 Y  164 (179)
Q Consensus       164 ~  164 (179)
                      .
T Consensus        79 L   79 (205)
T PTZ00057         79 L   79 (205)
T ss_pred             H
Confidence            3

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=93.72  E-value=0.16  Score=43.65  Aligned_cols=73  Identities=19%  Similarity=0.254  Sum_probs=47.5

Q ss_pred             CHHHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcC-----CCeEEEEcCCCHHHHHHHHHhcCCCCcceE-
Q 030327           74 TPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLN-----APFETVNILENEMLRQGLKEYSSWPTFPQL-  147 (179)
Q Consensus        74 ~~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~g-----v~y~~vdV~~d~~~~~~L~~~sg~~tvP~V-  147 (179)
                      +++.+.++...=-..-||=|+.+     ||+.|+++-.++..+-     .-|-.|||++....    ..-.|....|.. 
T Consensus         9 d~df~~~ls~ag~k~v~Vdfta~-----wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~t----aa~~gV~amPTFi   79 (288)
T KOG0908|consen    9 DSDFQRELSAAGGKLVVVDFTAS-----WCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGT----AATNGVNAMPTFI   79 (288)
T ss_pred             cHHHHHhhhccCceEEEEEEEec-----ccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhch----hhhcCcccCceEE
Confidence            34555555544333446667775     9999999999997763     33778888544332    233466667765 


Q ss_pred             -eeCCEEEe
Q 030327          148 -YIEGEFFG  155 (179)
Q Consensus       148 -fIdG~~IG  155 (179)
                       |.||+.|-
T Consensus        80 ff~ng~kid   88 (288)
T KOG0908|consen   80 FFRNGVKID   88 (288)
T ss_pred             EEecCeEee
Confidence             88998774

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=93.69  E-value=0.7  Score=36.89  Aligned_cols=70  Identities=26%  Similarity=0.350  Sum_probs=43.5

Q ss_pred             HHhhhcCCcEEEEEeeCCCCCCCchHHHH----HHHHHh---cCCCeEEEEcCCC---H--------------------H
Q 030327           81 LDKVVTGNKVVLFMKGTKDFPQCGFSHTV----VQILKS---LNAPFETVNILEN---E--------------------M  130 (179)
Q Consensus        81 l~~li~~~~Vvlysk~t~~~p~Cp~C~~a----k~lL~~---~gv~y~~vdV~~d---~--------------------~  130 (179)
                      +.+.+...-|.+|...    .|||.|+.-    +++.++   .+-+|+.|=|+.|   .                    +
T Consensus        27 ~~~~l~gKvV~lyFsA----~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~  102 (157)
T KOG2501|consen   27 ASEALQGKVVGLYFSA----HWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDD  102 (157)
T ss_pred             HhHhhCCcEEEEEEEE----EECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCH
Confidence            4445666778888776    799999953    444433   3445777666443   1                    2


Q ss_pred             HHHHHHHhcCCCCcceEee---CCEEE
Q 030327          131 LRQGLKEYSSWPTFPQLYI---EGEFF  154 (179)
Q Consensus       131 ~~~~L~~~sg~~tvP~VfI---dG~~I  154 (179)
                      ..+.|...++..++|.+.+   ||..|
T Consensus       103 ~~~~l~~ky~v~~iP~l~i~~~dG~~v  129 (157)
T KOG2501|consen  103 LIQKLSEKYEVKGIPALVILKPDGTVV  129 (157)
T ss_pred             HHHHHHHhcccCcCceeEEecCCCCEe
Confidence            3455555667777887755   66554

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=93.63  E-value=0.22  Score=46.37  Aligned_cols=68  Identities=21%  Similarity=0.344  Sum_probs=45.0

Q ss_pred             HHHHhhhcCCcEEEEEeeCCCCCCCchHHH-------HHHHHHhcC--CCeEEEEcCCCHHHHHHHHHhcCCCCcceE--
Q 030327           79 STLDKVVTGNKVVLFMKGTKDFPQCGFSHT-------VVQILKSLN--APFETVNILENEMLRQGLKEYSSWPTFPQL--  147 (179)
Q Consensus        79 ~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~-------ak~lL~~~g--v~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--  147 (179)
                      ..+++.|..+..+++.--   +|||++|++       +-..|.+.+  +....||-.++    ..+...++.+.+|++  
T Consensus        33 dnf~~~i~~~~~vlVeFY---APWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~----~~~~~~y~v~gyPTlki  105 (493)
T KOG0190|consen   33 DNFKETINGHEFVLVEFY---APWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE----SDLASKYEVRGYPTLKI  105 (493)
T ss_pred             ccHHHHhccCceEEEEEE---chhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh----hhhHhhhcCCCCCeEEE
Confidence            347788888887655543   389999984       556677764  44555555444    445555567777776  


Q ss_pred             eeCCEE
Q 030327          148 YIEGEF  153 (179)
Q Consensus       148 fIdG~~  153 (179)
                      |.||+.
T Consensus       106 FrnG~~  111 (493)
T KOG0190|consen  106 FRNGRS  111 (493)
T ss_pred             EecCCc
Confidence            778874

>smart00594 UAS UAS domain

Probab=93.54  E-value=0.57  Score=34.90  Aligned_cols=68  Identities=16%  Similarity=0.232  Sum_probs=40.6

Q ss_pred             HHHHHHHhhhcCC-cEEEEEeeCCCCCCCchHHHHHH-HHHhcC------CCeEE--EEcCCCHHHHHHHHHhcCCCCcc
Q 030327           76 ELKSTLDKVVTGN-KVVLFMKGTKDFPQCGFSHTVVQ-ILKSLN------APFET--VNILENEMLRQGLKEYSSWPTFP  145 (179)
Q Consensus        76 ~~~~~l~~li~~~-~Vvlysk~t~~~p~Cp~C~~ak~-lL~~~g------v~y~~--vdV~~d~~~~~~L~~~sg~~tvP  145 (179)
                      ..++.+++..++. .+.||.-+    +||++|+...+ +|..-.      -.|..  +|+...+.  ..+.+..+..++|
T Consensus        15 s~~~a~~~Ak~~~K~~lv~~~~----~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg--~~l~~~~~~~~~P   88 (122)
T smart00594       15 SLEAAKQEASRQRRLLWLYLHS----QDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEG--QRVSQFYKLDSFP   88 (122)
T ss_pred             CHHHHHHHHHhhcCCEEEEEeC----CCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhH--HHHHHhcCcCCCC
Confidence            4556666666665 46677766    79999997544 332221      13444  45544332  3566666888899


Q ss_pred             eEee
Q 030327          146 QLYI  149 (179)
Q Consensus       146 ~VfI  149 (179)
                      .+.+
T Consensus        89 ~~~~   92 (122)
T smart00594       89 YVAI   92 (122)
T ss_pred             EEEE
Confidence            8844

>PRK10542 glutathionine S-transferase; Provisional

Probab=93.36  E-value=0.25  Score=39.03  Aligned_cols=61  Identities=11%  Similarity=0.071  Sum_probs=45.4

Q ss_pred             hHHHHHHHHHhcCCCeEEEEcCCC--H-HHHHHHHHhcCCCCcceEee-CCEEEeecHHHHHHHH
Q 030327          105 FSHTVVQILKSLNAPFETVNILEN--E-MLRQGLKEYSSWPTFPQLYI-EGEFFGGCDITVEAYK  165 (179)
Q Consensus       105 ~C~~ak~lL~~~gv~y~~vdV~~d--~-~~~~~L~~~sg~~tvP~VfI-dG~~IGG~del~~l~~  165 (179)
                      .+.++.-+|.++|++|+.+.|+-.  + ...+++.+++-...+|++.+ ||..|-....+.++.+
T Consensus        10 ~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~YL~   74 (201)
T PRK10542         10 CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQYLA   74 (201)
T ss_pred             HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHHHH
Confidence            467788889999999998877532  1 12356777888889999986 6778887777777653

>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=93.08  E-value=0.85  Score=31.58  Aligned_cols=63  Identities=13%  Similarity=0.123  Sum_probs=43.0

Q ss_pred             CchHHHHHHHHHhcCCCeEEEEcCCC--HHH--HHHHHHh----cCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327          103 CGFSHTVVQILKSLNAPFETVNILEN--EML--RQGLKEY----SSWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus       103 Cp~C~~ak~lL~~~gv~y~~vdV~~d--~~~--~~~L~~~----sg~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      -+.|.+++-+|...|++|+.+.|+-.  +..  .+.+...    .-..++|.+..||..+.-...+..+..
T Consensus         9 ~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~YLa   79 (82)
T cd03075           9 RGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRYIA   79 (82)
T ss_pred             ccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHHHh
Confidence            35788999999999999998877532  111  1111111    145689999999988888777776653

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc

>PTZ00102 disulphide isomerase; Provisional

Probab=92.86  E-value=0.22  Score=44.78  Aligned_cols=53  Identities=26%  Similarity=0.453  Sum_probs=34.6

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhc--------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEe
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSL--------NAPFETVNILENEMLRQGLKEYSSWPTFPQLY  148 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~--------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~Vf  148 (179)
                      ..|+|+...    +||++|+.....|.+.        .+.+..+|.+.++...    ...+...+|.++
T Consensus       376 k~vlv~f~a----~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~----~~~~v~~~Pt~~  436 (477)
T PTZ00102        376 KDVLLEIYA----PWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPL----EEFSWSAFPTIL  436 (477)
T ss_pred             CCEEEEEEC----CCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccch----hcCCCcccCeEE
Confidence            346666665    7999999998888654        1346667777665432    223556778773

>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues

Probab=92.68  E-value=0.61  Score=33.98  Aligned_cols=70  Identities=16%  Similarity=0.192  Sum_probs=38.5

Q ss_pred             EEEEeeCCCCCCCchH------HHHHHHHHhc--------CCCeEEEEcCCC---HHHHHHHHHhc-CCCCcceEeeCCE
Q 030327           91 VLFMKGTKDFPQCGFS------HTVVQILKSL--------NAPFETVNILEN---EMLRQGLKEYS-SWPTFPQLYIEGE  152 (179)
Q Consensus        91 vlysk~t~~~p~Cp~C------~~ak~lL~~~--------gv~y~~vdV~~d---~~~~~~L~~~s-g~~tvP~VfIdG~  152 (179)
                      ++|+..    .-|.-|      +...+||+..        .+.|+++||...   +..++...++- .---+|.|.+||+
T Consensus         1 ~VYGAe----~~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i~~e   76 (93)
T PF07315_consen    1 VVYGAE----VICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVINDE   76 (93)
T ss_dssp             EEEE-S----S--GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEETTE
T ss_pred             Cccccc----ccchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEECCE
Confidence            467765    356665      4556666432        345889999643   22333333332 3345899999999


Q ss_pred             EEe-ecHHHHHHH
Q 030327          153 FFG-GCDITVEAY  164 (179)
Q Consensus       153 ~IG-G~del~~l~  164 (179)
                      .|| |.=.|+..+
T Consensus        77 iV~EGnp~LK~I~   89 (93)
T PF07315_consen   77 IVAEGNPQLKDIY   89 (93)
T ss_dssp             EEEESS--HHHHH
T ss_pred             EEecCCccHHHHH
Confidence            998 665666554

A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=92.60  E-value=0.14  Score=37.20  Aligned_cols=25  Identities=12%  Similarity=0.292  Sum_probs=17.7

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhc
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSL  116 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~  116 (179)
                      ..++|+..+    +||+.|......|.++
T Consensus        21 k~~vl~F~~----~~C~~C~~~~~~l~~~   45 (123)
T cd03011          21 KPVLVYFWA----TWCPVCRFTSPTVNQL   45 (123)
T ss_pred             CEEEEEEEC----CcChhhhhhChHHHHH
Confidence            445555554    6999999988777654

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=92.50  E-value=0.96  Score=33.58  Aligned_cols=60  Identities=22%  Similarity=0.331  Sum_probs=33.4

Q ss_pred             hhhcCCc-EEEEEeeCCCCCCCchHHHHHHHHHh-------cCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEe
Q 030327           83 KVVTGNK-VVLFMKGTKDFPQCGFSHTVVQILKS-------LNAPFETVNILENEMLRQGLKEYSSWPTFPQLY  148 (179)
Q Consensus        83 ~li~~~~-Vvlysk~t~~~p~Cp~C~~ak~lL~~-------~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~Vf  148 (179)
                      +.....+ |++|...    .|||+|.+-..-|.+       .|+.+.-|..+..+... .+.+..+ ..+|.+.
T Consensus        19 ~~~~~~~~vl~f~~~----~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~-~~~~~~~-~~~p~~~   86 (149)
T cd02970          19 ALLGEGPVVVVFYRG----FGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLE-AFDKGKF-LPFPVYA   86 (149)
T ss_pred             HHhcCCCEEEEEECC----CCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHH-HHHHhcC-CCCeEEE
Confidence            3444344 5555544    599999986665544       35666666665544444 3333323 3577544

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>KOG3425 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.46  E-value=0.35  Score=37.14  Aligned_cols=54  Identities=17%  Similarity=0.304  Sum_probs=38.6

Q ss_pred             CHHHHHHHHhhhcCCcEEEEEeeC----CCCCCCchHHHHHHHHHh-c-----CCCeEEEEcCC
Q 030327           74 TPELKSTLDKVVTGNKVVLFMKGT----KDFPQCGFSHTVVQILKS-L-----NAPFETVNILE  127 (179)
Q Consensus        74 ~~~~~~~l~~li~~~~Vvlysk~t----~~~p~Cp~C~~ak~lL~~-~-----gv~y~~vdV~~  127 (179)
                      -++.++.++..-+...|.+|..+.    .-.+|||+|.+|-.++.+ +     ++.|..++|-+
T Consensus        12 ~e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~   75 (128)
T KOG3425|consen   12 YESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGN   75 (128)
T ss_pred             HHHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecC
Confidence            356777788887777787777763    346899999999887754 2     34577777754

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=92.10  E-value=0.85  Score=31.36  Aligned_cols=47  Identities=19%  Similarity=0.254  Sum_probs=28.2

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc-------CCCeEEEEcCCC--HHHHHHHHH
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNILEN--EMLRQGLKE  137 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-------gv~y~~vdV~~d--~~~~~~L~~  137 (179)
                      ...++++...    +||+.|.+....|.+.       ++.+..++++.+  +++++.+.+
T Consensus        19 ~k~~ll~f~~----~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~   74 (116)
T cd02966          19 GKVVLVNFWA----SWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKK   74 (116)
T ss_pred             CCEEEEEeec----ccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHH
Confidence            3444544444    5999999777666443       456777777764  444444333

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria

Probab=92.07  E-value=0.87  Score=37.63  Aligned_cols=64  Identities=19%  Similarity=0.199  Sum_probs=34.1

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcC----CCeE--EEEcC---------CCHH---HHHHHHHhcC--CCCcceEee
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLN----APFE--TVNIL---------ENEM---LRQGLKEYSS--WPTFPQLYI  149 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~g----v~y~--~vdV~---------~d~~---~~~~L~~~sg--~~tvP~VfI  149 (179)
                      |.||+.     .+|.-|--|-++|.++.    |=.-  .||..         ..++   .++...+..|  ....||++|
T Consensus         2 VELFTS-----QGCsSCPpAD~~L~~l~~~~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vV   76 (202)
T PF06764_consen    2 VELFTS-----QGCSSCPPADRLLSELAARPDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVV   76 (202)
T ss_dssp             EEEEE------TT-TT-HHHHHHHHHHHHHTSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEE
T ss_pred             eeEecC-----CCCCCCcHHHHHHHHhhcCCCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEE
Confidence            789999     59999999999997763    2111  22221         1232   2334444444  344799999


Q ss_pred             CCE-EEeecH
Q 030327          150 EGE-FFGGCD  158 (179)
Q Consensus       150 dG~-~IGG~d  158 (179)
                      ||+ +.+|.+
T Consensus        77 nG~~~~~g~~   86 (202)
T PF06764_consen   77 NGREHRVGSD   86 (202)
T ss_dssp             TTTEEEETT-
T ss_pred             CCeeeeeccC
Confidence            994 556665

The function of this family is unknown.; PDB: 2AXO_A.

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=91.98  E-value=0.95  Score=36.28  Aligned_cols=72  Identities=21%  Similarity=0.303  Sum_probs=33.5

Q ss_pred             HHHhhhcCCcEEEEEeeCCCCCCCchHHHHHH----------HHHhcCCCeEEEEcCCCHHHHHHHH----HhcCCCCcc
Q 030327           80 TLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQ----------ILKSLNAPFETVNILENEMLRQGLK----EYSSWPTFP  145 (179)
Q Consensus        80 ~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~----------lL~~~gv~y~~vdV~~d~~~~~~L~----~~sg~~tvP  145 (179)
                      .+++.-++++.++..-++   .+|.+|+.+.+          +|++.-|++ .+|.++.+++...+.    ..+|....|
T Consensus        29 a~~~Ak~e~KpIfl~ig~---~~C~wChvM~~esf~d~eVa~~lN~~FI~V-kvDree~Pdid~~y~~~~~~~~~~gGwP  104 (163)
T PF03190_consen   29 ALEKAKKENKPIFLSIGY---SWCHWCHVMERESFSDPEVAEYLNRNFIPV-KVDREERPDIDKIYMNAVQAMSGSGGWP  104 (163)
T ss_dssp             HHHHHHHHT--EEEEEE----TT-HHHHHHHHHTTT-HHHHHHHHHH-EEE-EEETTT-HHHHHHHHHHHHHHHS---SS
T ss_pred             HHHHHHhcCCcEEEEEEe---cCCcchhhhcccCcCCHHHHHHHhCCEEEE-EeccccCccHHHHHHHHHHHhcCCCCCC
Confidence            345555555544444432   58999995543          444433333 356667777765553    334555566


Q ss_pred             eE-ee--CCEEEe
Q 030327          146 QL-YI--EGEFFG  155 (179)
Q Consensus       146 ~V-fI--dG~~IG  155 (179)
                      .. |.  +|+.+-
T Consensus       105 l~vfltPdg~p~~  117 (163)
T PF03190_consen  105 LTVFLTPDGKPFF  117 (163)
T ss_dssp             EEEEE-TTS-EEE
T ss_pred             ceEEECCCCCeee
Confidence            54 22  666664

; PDB: 3IRA_A.

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=91.72  E-value=0.92  Score=33.45  Aligned_cols=27  Identities=22%  Similarity=0.162  Sum_probs=18.7

Q ss_pred             cCCcEEEEEeeCCCCCCCchHHHHHHHHHhc
Q 030327           86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKSL  116 (179)
Q Consensus        86 ~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~  116 (179)
                      +...++||..+    .||++|.+....|+++
T Consensus        22 ~gk~vvl~F~a----~~C~~C~~~~p~l~~l   48 (126)
T cd03012          22 RGKVVLLDFWT----YCCINCLHTLPYLTDL   48 (126)
T ss_pred             CCCEEEEEEEC----CCCccHHHHHHHHHHH
Confidence            45556666665    5999999877666443

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.48  E-value=1  Score=33.20  Aligned_cols=76  Identities=17%  Similarity=0.233  Sum_probs=47.3

Q ss_pred             hcCCcEEEEEeeCCCCCCCchHH------HHHHHHHhc--------CCCeEEEEcCCC--HHHHHHHHH-h-cCCCCcce
Q 030327           85 VTGNKVVLFMKGTKDFPQCGFSH------TVVQILKSL--------NAPFETVNILEN--EMLRQGLKE-Y-SSWPTFPQ  146 (179)
Q Consensus        85 i~~~~Vvlysk~t~~~p~Cp~C~------~ak~lL~~~--------gv~y~~vdV~~d--~~~~~~L~~-~-sg~~tvP~  146 (179)
                      ++..++++|+..    .-|--|.      ...+||+..        ...|+++||...  .+....+.+ + ...--+|.
T Consensus         2 ~~~~~l~VyGae----~iCASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~~~~aekI~~dey~YPl   77 (106)
T COG4837           2 VNEAKLVVYGAE----VICASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHDLQFAEKIEQDEYFYPL   77 (106)
T ss_pred             CceeEEEEecch----hhhHHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHHHHHHHHHhcccccceE
Confidence            445678899887    3576664      556666442        345889999543  222222222 2 23456899


Q ss_pred             EeeCCEEEe-ecHHHHHHH
Q 030327          147 LYIEGEFFG-GCDITVEAY  164 (179)
Q Consensus       147 VfIdG~~IG-G~del~~l~  164 (179)
                      |.++|+.|+ |.-.+++.+
T Consensus        78 ivvedeiVaeGnprlKdiy   96 (106)
T COG4837          78 IVVEDEIVAEGNPRLKDIY   96 (106)
T ss_pred             EEEcceEeecCCchHHHHH
Confidence            999999997 555566554

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=91.39  E-value=0.76  Score=30.90  Aligned_cols=50  Identities=24%  Similarity=0.367  Sum_probs=32.3

Q ss_pred             CCCchHHHHHHHHHhc------CCCeEEEEcC-CCHHHHHHHHHhcCCCCcceEe--eCCE
Q 030327          101 PQCGFSHTVVQILKSL------NAPFETVNIL-ENEMLRQGLKEYSSWPTFPQLY--IEGE  152 (179)
Q Consensus       101 p~Cp~C~~ak~lL~~~------gv~y~~vdV~-~d~~~~~~L~~~sg~~tvP~Vf--IdG~  152 (179)
                      +||++|+.....|.+.      ++.+..+|+. .+.+..+.+..  ....+|.+.  .+|+
T Consensus        42 ~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~p~~~~~~~~~  100 (127)
T COG0526          42 PWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGV--AVRSIPTLLLFKDGK  100 (127)
T ss_pred             CcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhh--hhccCCeEEEEeCcc
Confidence            5999999998888554      2567788885 56666666553  122345553  5554

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=91.33  E-value=0.95  Score=35.05  Aligned_cols=74  Identities=16%  Similarity=0.265  Sum_probs=43.6

Q ss_pred             HHhhhcCC-cEEEEEee-CCCCCCCchHHHHHHHH-HhcC---CCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCE
Q 030327           81 LDKVVTGN-KVVLFMKG-TKDFPQCGFSHTVVQIL-KSLN---APFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGE  152 (179)
Q Consensus        81 l~~li~~~-~Vvlysk~-t~~~p~Cp~C~~ak~lL-~~~g---v~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~  152 (179)
                      ++..++.+ ..+||..+ -...|.+..-.-+..-| ++++   +.+..+|+++++++...    +|-..+|.+  |-||+
T Consensus        27 ~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~----fgV~siPTLl~FkdGk  102 (132)
T PRK11509         27 LDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDR----FGVFRFPATLVFTGGN  102 (132)
T ss_pred             HHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHH----cCCccCCEEEEEECCE
Confidence            44444444 35566655 23334444444444433 3333   56888899888776554    455567766  77999


Q ss_pred             EEeecH
Q 030327          153 FFGGCD  158 (179)
Q Consensus       153 ~IGG~d  158 (179)
                      .+|-..
T Consensus       103 ~v~~i~  108 (132)
T PRK11509        103 YRGVLN  108 (132)
T ss_pred             EEEEEe
Confidence            987553

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=91.28  E-value=0.9  Score=32.69  Aligned_cols=63  Identities=29%  Similarity=0.400  Sum_probs=37.2

Q ss_pred             HHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHh-------cCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee
Q 030327           81 LDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKS-------LNAPFETVNILENEMLRQGLKEYSSWPTFPQLYI  149 (179)
Q Consensus        81 l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~-------~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI  149 (179)
                      ++++ ....++|+...+   .||++|.....-|.+       .|+.+-.+..+...+.++.+++. + ..+|.+.-
T Consensus        20 l~~l-~gk~~vl~f~~~---~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~-~-~~~~~~~D   89 (124)
T PF00578_consen   20 LSDL-KGKPVVLFFWPT---AWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEY-G-LPFPVLSD   89 (124)
T ss_dssp             GGGG-TTSEEEEEEEST---TTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHH-T-CSSEEEEE
T ss_pred             HHHH-CCCcEEEEEeCc---cCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhh-c-cccccccC
Confidence            3445 455666666651   389999766554433       35666666676556666666654 2 45666544

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]

Probab=91.08  E-value=1  Score=37.30  Aligned_cols=62  Identities=15%  Similarity=0.241  Sum_probs=51.3

Q ss_pred             CCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHH
Q 030327          102 QCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAY  164 (179)
Q Consensus       102 ~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~  164 (179)
                      ..+.++-++.+|.-.|++|++..+...+. ...++..+...++|++.|||..|...-.+..+.
T Consensus        11 ~RG~ae~iR~lf~~a~v~fEd~r~~~~~~-w~~~K~~~pfgqlP~l~vDg~~i~QS~AI~RyL   72 (206)
T KOG1695|consen   11 IRGLAEPIRLLFAYAGVSFEDKRITMEDA-WEELKDKMPFGQLPVLEVDGKKLVQSRAILRYL   72 (206)
T ss_pred             cchhHHHHHHHHHhcCCCcceeeeccccc-hhhhcccCCCCCCCEEeECCEeeccHHHHHHHH
Confidence            68899999999999999999999865443 455666677889999999999998887777654

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=90.91  E-value=1  Score=36.26  Aligned_cols=89  Identities=15%  Similarity=0.264  Sum_probs=50.1

Q ss_pred             HHHHHhhhcCCc--EEEEEeeCCCCCCCchHHHHHHHHHhc---------CCCeEEEEcCCC---------H---HHHHH
Q 030327           78 KSTLDKVVTGNK--VVLFMKGTKDFPQCGFSHTVVQILKSL---------NAPFETVNILEN---------E---MLRQG  134 (179)
Q Consensus        78 ~~~l~~li~~~~--Vvlysk~t~~~p~Cp~C~~ak~lL~~~---------gv~y~~vdV~~d---------~---~~~~~  134 (179)
                      .+..+.+.-.++  +++|..     ++|+||.+.++-+...         ++...++++...         .   .-.++
T Consensus        32 ~~d~ksi~~~~Kylllmfes-----~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~E  106 (182)
T COG2143          32 FDDNKSISPNDKYLLLMFES-----NGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEE  106 (182)
T ss_pred             HHHHHhcCccCcEEEEEEcC-----CCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHH
Confidence            344444554554  555655     6999999988866322         233445555321         1   11346


Q ss_pred             HHHhcCCCCcceEe-eC--CEEEe---ec---HH---HHHHHHcccHHH
Q 030327          135 LKEYSSWPTFPQLY-IE--GEFFG---GC---DI---TVEAYKNGELQE  171 (179)
Q Consensus       135 L~~~sg~~tvP~Vf-Id--G~~IG---G~---de---l~~l~~~GeL~~  171 (179)
                      |.+..+.++.|.++ .|  |+.|+   |+   ++   +.++..+|+.++
T Consensus       107 La~kf~vrstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYVa~g~ykd  155 (182)
T COG2143         107 LAQKFAVRSTPTFVFFDKTGKTILELPGYMPPEQFLAVLKYVADGKYKD  155 (182)
T ss_pred             HHHHhccccCceEEEEcCCCCEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence            77777888899884 44  45565   43   22   444555555443

>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]

Probab=90.74  E-value=1.2  Score=36.94  Aligned_cols=71  Identities=14%  Similarity=0.089  Sum_probs=57.1

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEc--CCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHH
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNI--LENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAY  164 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV--~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~  164 (179)
                      ++.+|+.     +.-+.|+++.-.++..|++|+.+.|  ...+....++..+....++|.+.-||-.+-....+..+.
T Consensus         2 ~~~ly~~-----~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d~~~~l~eS~AI~~Yl   74 (226)
T KOG0867|consen    2 KLKLYGH-----LGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALEDGGLTLWESHAILRYL   74 (226)
T ss_pred             CceEeec-----CCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEecCCeEEeeHHHHHHHH
Confidence            4568888     4788999999999999999988854  455666677778888899999999998888776666554

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=90.72  E-value=1.3  Score=41.57  Aligned_cols=27  Identities=4%  Similarity=0.065  Sum_probs=19.8

Q ss_pred             cCCcEEEEEeeCCCCCCCchHHHHHHHHHhc
Q 030327           86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKSL  116 (179)
Q Consensus        86 ~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~  116 (179)
                      +...|+|+...    +||+.|++....|.++
T Consensus        55 kGKpVvV~FWA----TWCppCk~emP~L~eL   81 (521)
T PRK14018         55 KDKPTLIKFWA----SWCPLCLSELGETEKW   81 (521)
T ss_pred             CCCEEEEEEEc----CCCHHHHHHHHHHHHH
Confidence            34556666665    6999999988887654

>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG

Probab=90.24  E-value=0.92  Score=32.96  Aligned_cols=64  Identities=17%  Similarity=0.259  Sum_probs=41.4

Q ss_pred             CCchHHHHHHHHHhcCC--CeEEEEcCCCHHH--HHHHHHhc--CCCCcceEeeCCE-EEeecHHHHHHHHc
Q 030327          102 QCGFSHTVVQILKSLNA--PFETVNILENEML--RQGLKEYS--SWPTFPQLYIEGE-FFGGCDITVEAYKN  166 (179)
Q Consensus       102 ~Cp~C~~ak~lL~~~gv--~y~~vdV~~d~~~--~~~L~~~s--g~~tvP~VfIdG~-~IGG~del~~l~~~  166 (179)
                      .||+|....+++.+.+.  .++.+++...+..  .+... .+  ...+.-.+.-+|+ ...|.+-+.++...
T Consensus         6 ~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~g~~~~~G~~A~~~l~~~   76 (114)
T PF04134_consen    6 DCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASYG-ISPEDADSRLHLIDDGERVYRGSDAVLRLLRR   76 (114)
T ss_pred             CCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhcC-cCHHHHcCeeEEecCCCEEEEcHHHHHHHHHH
Confidence            89999999999999874  5888898433221  11110 10  1223334434776 88999988887665

Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=89.96  E-value=0.58  Score=41.40  Aligned_cols=53  Identities=17%  Similarity=0.357  Sum_probs=34.1

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc---------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL---------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI  149 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~---------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI  149 (179)
                      ...++|+...    +||+.|+.....+.+.         ++.+..+|++.++-.     . .+...+|.+++
T Consensus       364 ~~~vlv~f~a----~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~~~-----~-~~i~~~Pt~~~  425 (462)
T TIGR01130       364 TKDVLVEFYA----PWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATANDVP-----P-FEVEGFPTIKF  425 (462)
T ss_pred             CCeEEEEEEC----CCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCccC-----C-CCccccCEEEE
Confidence            3446665554    7999999888877552         355677787665321     1 35567888744

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=89.85  E-value=0.38  Score=40.69  Aligned_cols=32  Identities=16%  Similarity=0.362  Sum_probs=21.5

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHh----cCCCeEEEEc
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKS----LNAPFETVNI  125 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~----~gv~y~~vdV  125 (179)
                      .|++|+-     +.||||++.-+-+..    -+|.+.++.+
T Consensus       120 ~I~vFtD-----p~CpyC~kl~~~l~~~~~~g~V~v~~ip~  155 (251)
T PRK11657        120 IVYVFAD-----PNCPYCKQFWQQARPWVDSGKVQLRHILV  155 (251)
T ss_pred             EEEEEEC-----CCChhHHHHHHHHHHHhhcCceEEEEEec
Confidence            3667777     799999998665543    2366666653

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=89.74  E-value=2.5  Score=38.52  Aligned_cols=86  Identities=14%  Similarity=0.293  Sum_probs=53.5

Q ss_pred             CHHHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc---CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeC
Q 030327           74 TPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL---NAPFETVNILENEMLRQGLKEYSSWPTFPQLYIE  150 (179)
Q Consensus        74 ~~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~---gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfId  150 (179)
                      ++++-+.++.+-......-|..-     .|.-|-.+.+.|+-+   +=.....-| +....+++...+ +.-.+|.||.|
T Consensus       104 ~q~vieqik~i~g~~~FETy~Sl-----tC~nCPDVVQALN~msvlNp~I~H~~I-dGa~Fq~Evear-~IMaVPtvfln  176 (520)
T COG3634         104 DQDVIEQIKAIDGDFHFETYFSL-----TCHNCPDVVQALNLMSVLNPRIKHTAI-DGALFQDEVEAR-NIMAVPTVFLN  176 (520)
T ss_pred             hHHHHHHHHhcCCceeEEEEEEe-----eccCChHHHHHHHHHHhcCCCceeEEe-cchhhHhHHHhc-cceecceEEEc
Confidence            44556666666666777777774     566666666655554   434444444 235556666655 56789999999


Q ss_pred             CEEEee----cHHHHHHHHc
Q 030327          151 GEFFGG----CDITVEAYKN  166 (179)
Q Consensus       151 G~~IGG----~del~~l~~~  166 (179)
                      |+.+|.    .+++.+-...
T Consensus       177 Ge~fg~GRmtleeilaki~~  196 (520)
T COG3634         177 GEEFGQGRMTLEEILAKIDT  196 (520)
T ss_pred             chhhcccceeHHHHHHHhcC
Confidence            999874    3444444444

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=89.39  E-value=0.7  Score=35.65  Aligned_cols=34  Identities=18%  Similarity=0.282  Sum_probs=23.4

Q ss_pred             HHHHHHHhhhcCCc-EEEEEeeCCCCCCCchHHHHHHHH
Q 030327           76 ELKSTLDKVVTGNK-VVLFMKGTKDFPQCGFSHTVVQIL  113 (179)
Q Consensus        76 ~~~~~l~~li~~~~-Vvlysk~t~~~p~Cp~C~~ak~lL  113 (179)
                      +.++.++.+.++++ |+|+.-+    .||++|++..+..
T Consensus        11 ~~eeal~~Ak~~~Kpvmv~f~s----dwC~~Ck~l~k~~   45 (130)
T cd02960          11 TYEEGLYKAKKSNKPLMVIHHL----EDCPHSQALKKAF   45 (130)
T ss_pred             hHHHHHHHHHHCCCeEEEEEeC----CcCHhHHHHHHHh
Confidence            45666777666655 5555544    5999999888754

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]

Probab=89.08  E-value=0.89  Score=37.47  Aligned_cols=73  Identities=21%  Similarity=0.241  Sum_probs=50.2

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEc--CCC-HHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNI--LEN-EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV--~~d-~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      +-++|+.   |...|  +.+|+-.|.-+|++|+++-|  ... .+.-.++++..-..+||.+.|||..+-..=.+.++.+
T Consensus         5 KpiLYSY---WrSSC--swRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII~YLe   79 (217)
T KOG0868|consen    5 KPILYSY---WRSSC--SWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAIIEYLE   79 (217)
T ss_pred             cchhhhh---hcccc--hHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHHHHHH
Confidence            4566666   11234  34666677777888776655  333 4444578888788899999999999987777777655


Q ss_pred             c
Q 030327          166 N  166 (179)
Q Consensus       166 ~  166 (179)
                      +
T Consensus        80 E   80 (217)
T KOG0868|consen   80 E   80 (217)
T ss_pred             h
Confidence            4

>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]

Probab=88.90  E-value=0.43  Score=42.32  Aligned_cols=75  Identities=11%  Similarity=0.258  Sum_probs=42.4

Q ss_pred             HHHHHHHHhhhcCCcE-EEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcC-----CCHHHHHHHHHhcCCCCcceE-
Q 030327           75 PELKSTLDKVVTGNKV-VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNIL-----ENEMLRQGLKEYSSWPTFPQL-  147 (179)
Q Consensus        75 ~~~~~~l~~li~~~~V-vlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~-----~d~~~~~~L~~~sg~~tvP~V-  147 (179)
                      .++.++.++.-+..-. |=|..     |||.+|++.-.++++.|.....++..     .|..-...+....|...+|.| 
T Consensus        31 eDLddkFkdnkdddiW~VdFYA-----PWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk  105 (468)
T KOG4277|consen   31 EDLDDKFKDNKDDDIWFVDFYA-----PWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIK  105 (468)
T ss_pred             hhhhHHhhhcccCCeEEEEeec-----hhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEE
Confidence            3455555554444443 33444     79999999999999887655444321     121112233333456667777 


Q ss_pred             eeCCEEE
Q 030327          148 YIEGEFF  154 (179)
Q Consensus       148 fIdG~~I  154 (179)
                      |..|.+.
T Consensus       106 ~~kgd~a  112 (468)
T KOG4277|consen  106 FFKGDHA  112 (468)
T ss_pred             EecCCee
Confidence            5555554

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=88.70  E-value=1.7  Score=31.93  Aligned_cols=58  Identities=19%  Similarity=0.091  Sum_probs=31.3

Q ss_pred             cCCcEEEEEe-eCCCCCCCchHHHHHHHHHh-------cCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEe
Q 030327           86 TGNKVVLFMK-GTKDFPQCGFSHTVVQILKS-------LNAPFETVNILENEMLRQGLKEYSSWPTFPQLY  148 (179)
Q Consensus        86 ~~~~Vvlysk-~t~~~p~Cp~C~~ak~lL~~-------~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~Vf  148 (179)
                      ....++||.. +    .||+.|.....-|.+       .++.+..+.++....+++...+. +...+|.+.
T Consensus        21 ~gk~~ll~f~~~----~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~-~~~~~~~l~   86 (140)
T cd02971          21 KGKWVVLFFYPK----DFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKE-GGLNFPLLS   86 (140)
T ss_pred             CCCeEEEEEeCC----CCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcc-cCCCceEEE
Confidence            3444555544 3    489999875544433       45666666665434444444332 344566543

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=87.27  E-value=4.3  Score=31.44  Aligned_cols=42  Identities=17%  Similarity=0.343  Sum_probs=24.9

Q ss_pred             HHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc-------CCCeEEEEcC
Q 030327           81 LDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNIL  126 (179)
Q Consensus        81 l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-------gv~y~~vdV~  126 (179)
                      +.++.....+++|...    +|||.|.....-|.++       ++.+..+.++
T Consensus        19 l~~~~~~k~~ll~f~~----t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d   67 (171)
T cd02969          19 LADFADGKALVVMFIC----NHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSN   67 (171)
T ss_pred             HHHHhCCCEEEEEEEC----CCCccHHHHHHHHHHHHHHHhhCCeEEEEEecC
Confidence            4444355666777665    6999998654444332       4555555554

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=87.00  E-value=3.8  Score=30.14  Aligned_cols=48  Identities=21%  Similarity=0.101  Sum_probs=26.9

Q ss_pred             CCcEEEEEe-eCCCCCCCchHHHHHHHH-------HhcCCCeEEEEcCCCHHHHHHHHHh
Q 030327           87 GNKVVLFMK-GTKDFPQCGFSHTVVQIL-------KSLNAPFETVNILENEMLRQGLKEY  138 (179)
Q Consensus        87 ~~~Vvlysk-~t~~~p~Cp~C~~ak~lL-------~~~gv~y~~vdV~~d~~~~~~L~~~  138 (179)
                      ...++|+.. +    .|||.|.....-|       .+.++.+..+.++....+++.+++.
T Consensus        23 gk~~ll~f~~~----~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~   78 (140)
T cd03017          23 GKPVVLYFYPK----DDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKY   78 (140)
T ss_pred             CCcEEEEEeCC----CCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHh
Confidence            344555544 3    3889997544333       3346666666666555565555543

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=85.48  E-value=3.1  Score=42.21  Aligned_cols=28  Identities=25%  Similarity=0.182  Sum_probs=19.8

Q ss_pred             hcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc
Q 030327           85 VTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL  116 (179)
Q Consensus        85 i~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~  116 (179)
                      ++...|+|+...    .||+.|+.....|+++
T Consensus       418 lkGK~vll~FWA----sWC~pC~~e~P~L~~l  445 (1057)
T PLN02919        418 LKGKVVILDFWT----YCCINCMHVLPDLEFL  445 (1057)
T ss_pred             cCCCEEEEEEEC----CcChhHHhHhHHHHHH
Confidence            345556666665    6999999988777554

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=85.47  E-value=3.8  Score=30.54  Aligned_cols=45  Identities=20%  Similarity=0.137  Sum_probs=25.1

Q ss_pred             CCCchHHHHHHHHHh-------cCCCeEEEEcCCCHHHHHHHHHhcCCCCcceE
Q 030327          101 PQCGFSHTVVQILKS-------LNAPFETVNILENEMLRQGLKEYSSWPTFPQL  147 (179)
Q Consensus       101 p~Cp~C~~ak~lL~~-------~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V  147 (179)
                      .||+.|.+...-|++       .|+.+--|.++..+.+++.+++. + ..+|.+
T Consensus        39 ~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~-~-~~~~~~   90 (149)
T cd03018          39 AFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEEN-G-LTFPLL   90 (149)
T ss_pred             CCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhc-C-CCceEe
Confidence            499999966555433       35666666655444555554443 3 245543

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=85.45  E-value=0.98  Score=33.49  Aligned_cols=56  Identities=9%  Similarity=0.104  Sum_probs=36.0

Q ss_pred             HHHHHHHhcCCCeEEEEc-CCCHHHHHHH------HHhcCCCCcceEeeCCEEEeecHHHHHH
Q 030327          108 TVVQILKSLNAPFETVNI-LENEMLRQGL------KEYSSWPTFPQLYIEGEFFGGCDITVEA  163 (179)
Q Consensus       108 ~ak~lL~~~gv~y~~vdV-~~d~~~~~~L------~~~sg~~tvP~VfIdG~~IGG~del~~l  163 (179)
                      .+.+++.+.|++...++- ..+++.++.+      ....|-..+|.++|||+.+-|.++...+
T Consensus        87 ~l~~~a~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~gtPt~~v~g~~~~G~~~~~~l  149 (154)
T cd03023          87 SLLRIAKKAGLDEAKLKKDMDDPEIEATIDKNRQLARALGITGTPAFIIGDTVIPGAVPADTL  149 (154)
T ss_pred             HHHHHHHHcCCCHHHHHHHhhChHHHHHHHHHHHHHHHcCCCcCCeEEECCEEecCCCCHHHH
Confidence            567778888887543331 1223333322      2234788999999999999998765544

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=85.27  E-value=4.3  Score=30.77  Aligned_cols=49  Identities=12%  Similarity=0.100  Sum_probs=25.4

Q ss_pred             cCCcEEEEEeeCCCCCCCchHHHH-------HHHHHhcCCCeEEEEcCCCHHHHHHHHH
Q 030327           86 TGNKVVLFMKGTKDFPQCGFSHTV-------VQILKSLNAPFETVNILENEMLRQGLKE  137 (179)
Q Consensus        86 ~~~~Vvlysk~t~~~p~Cp~C~~a-------k~lL~~~gv~y~~vdV~~d~~~~~~L~~  137 (179)
                      +...++|+...+   .||+.|...       .+-+.+.|+.+-.|.++..+++++.+++
T Consensus        29 ~gk~~ll~f~~~---~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~   84 (154)
T PRK09437         29 QGQRVLVYFYPK---AMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEK   84 (154)
T ss_pred             CCCCEEEEEECC---CCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH
Confidence            344555555431   257777543       3333444666666666554555554444

>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space

Probab=84.42  E-value=4.6  Score=27.76  Aligned_cols=54  Identities=28%  Similarity=0.252  Sum_probs=42.3

Q ss_pred             CchHHHHHHHHHhcCCC---eEEEEcCCCHHHHHHHHHhcCCCCcceEee-CCEEEeecHHHHHHH
Q 030327          103 CGFSHTVVQILKSLNAP---FETVNILENEMLRQGLKEYSSWPTFPQLYI-EGEFFGGCDITVEAY  164 (179)
Q Consensus       103 Cp~C~~ak~lL~~~gv~---y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI-dG~~IGG~del~~l~  164 (179)
                      -+.|-.+..+|+-.+.+   |+.+... |+.       ++-...+|.+.. +|+.+.|+.++.++.
T Consensus        14 d~ecLa~~~yl~~~~~~~~~~~vv~s~-n~~-------~Sptg~LP~L~~~~~~~vsg~~~Iv~yL   71 (72)
T PF10568_consen   14 DPECLAVIAYLKFAGAPEQQFKVVPSN-NPW-------LSPTGELPALIDSGGTWVSGFRNIVEYL   71 (72)
T ss_pred             CHHHHHHHHHHHhCCCCCceEEEEEcC-CCC-------cCCCCCCCEEEECCCcEEECHHHHHHhh
Confidence            46799999999999999   6655542 222       245668999999 999999999998864

In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=84.03  E-value=3.6  Score=31.39  Aligned_cols=23  Identities=22%  Similarity=0.515  Sum_probs=14.3

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHH
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQIL  113 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL  113 (179)
                      .+.|+|+...    +|||+|.+...-|
T Consensus        22 Gk~vvv~~~a----s~C~~c~~~~~~l   44 (153)
T TIGR02540        22 GKVSLVVNVA----SECGFTDQNYRAL   44 (153)
T ss_pred             CCEEEEEEeC----CCCCchhhhHHHH
Confidence            4445555433    6999998766544

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=83.84  E-value=3.9  Score=30.44  Aligned_cols=54  Identities=9%  Similarity=-0.097  Sum_probs=28.8

Q ss_pred             CCcEEEEEeeCCCCCC-CchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcc
Q 030327           87 GNKVVLFMKGTKDFPQ-CGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFP  145 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~-Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP  145 (179)
                      ...++|+...    .| |++|.+-...|.++     |+.+--|+++..... +++.+..+...+|
T Consensus        26 gk~vvl~f~~----~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~-~~~~~~~~~~~~~   85 (143)
T cd03014          26 GKVKVISVFP----SIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQ-KRWCGAEGVDNVT   85 (143)
T ss_pred             CCeEEEEEEc----CCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHH-HHHHHhcCCCCce
Confidence            4456665553    25 79999877666443     555666666543333 3333333333444

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=83.78  E-value=3  Score=31.82  Aligned_cols=55  Identities=16%  Similarity=0.236  Sum_probs=29.6

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc-------CCCeEEEEcCC-------C-HHHHHHHHHhcCCCCcceE
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNILE-------N-EMLRQGLKEYSSWPTFPQL  147 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-------gv~y~~vdV~~-------d-~~~~~~L~~~sg~~tvP~V  147 (179)
                      ...|+|+...    .||| |.+-...|+++       |+.+.-+.++.       + +++++.+++..| -++|.+
T Consensus        22 Gk~vvl~fwa----twC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~-~~fp~~   91 (152)
T cd00340          22 GKVLLIVNVA----SKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYG-VTFPMF   91 (152)
T ss_pred             CCEEEEEEEc----CCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcC-CCceee
Confidence            4456665554    5999 98866666543       33344443321       2 345555554223 367765

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway

Probab=83.39  E-value=1.7  Score=33.83  Aligned_cols=57  Identities=12%  Similarity=0.188  Sum_probs=38.6

Q ss_pred             HHHHHHHHhcCCCeEEEE-cCCCHHHHHHHHH------hcCCCCcceEeeCCEEEeecHHHHHH
Q 030327          107 HTVVQILKSLNAPFETVN-ILENEMLRQGLKE------YSSWPTFPQLYIEGEFFGGCDITVEA  163 (179)
Q Consensus       107 ~~ak~lL~~~gv~y~~vd-V~~d~~~~~~L~~------~sg~~tvP~VfIdG~~IGG~del~~l  163 (179)
                      ..+.+++.+.|++.+.+. ...+++.++.+.+      ..|...+|.++|||+.+-|.|.+..+
T Consensus       124 ~~l~~~a~~~Gld~~~~~~~~~~~~~~~~l~~~~~~a~~~gi~gvPtfvv~g~~~~G~~~l~~~  187 (192)
T cd03022         124 AVLAAVAAAAGLDADELLAAADDPAVKAALRANTEEAIARGVFGVPTFVVDGEMFWGQDRLDML  187 (192)
T ss_pred             HHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHHHHHHHHHcCCCcCCeEEECCeeecccccHHHH
Confidence            357788899998754332 2334444433332      23889999999999999898876644

It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).

>PTZ00056 glutathione peroxidase; Provisional

Probab=83.19  E-value=4.4  Score=32.86  Aligned_cols=35  Identities=11%  Similarity=0.287  Sum_probs=19.8

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc-------CCCeEEEEc
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNI  125 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-------gv~y~~vdV  125 (179)
                      ...|+|+...    .||++|.+-...|.++       |+.+--+++
T Consensus        39 Gkvvlv~fwA----swC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~   80 (199)
T PTZ00056         39 NKVLMITNSA----SKCGLTKKHVDQMNRLHSVFNPLGLEILAFPT   80 (199)
T ss_pred             CCEEEEEEEC----CCCCChHHHHHHHHHHHHHHhcCceEEEEecc
Confidence            3445554443    5999998755444333       455555544

>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E

Probab=82.80  E-value=14  Score=30.06  Aligned_cols=94  Identities=17%  Similarity=0.292  Sum_probs=62.4

Q ss_pred             CCHHHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc-CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCC
Q 030327           73 LTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL-NAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEG  151 (179)
Q Consensus        73 ~~~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG  151 (179)
                      ..+.+...+....+..+-++|.-.... .+=.+...+++.|+++ |++...+++.++++..+.|.+.      =.||+.|
T Consensus        16 ~~~~l~~~l~~~~~~~~~i~~IptAs~-~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~~a------d~I~l~G   88 (212)
T cd03146          16 ALPAIDDLLLSLTKARPKVLFVPTASG-DRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALLEA------DVIYVGG   88 (212)
T ss_pred             chHHHHHHHHHhccCCCeEEEECCCCC-CHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHhcC------CEEEECC
Confidence            344566667777655555555554222 2335788999999999 9998888876656656666543      3678887


Q ss_pred             EEEeecHHHHHHHHcccHHHHHHhh
Q 030327          152 EFFGGCDITVEAYKNGELQELLEKA  176 (179)
Q Consensus       152 ~~IGG~del~~l~~~GeL~~~L~~a  176 (179)
                         |....+.+..++-.|.++|+++
T Consensus        89 ---G~~~~~~~~l~~~~l~~~l~~~  110 (212)
T cd03146          89 ---GNTFNLLAQWREHGLDAILKAA  110 (212)
T ss_pred             ---chHHHHHHHHHHcCHHHHHHHH
Confidence               6666666655555677777654

Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.

>PLN02412 probable glutathione peroxidase

Probab=82.72  E-value=5.9  Score=30.99  Aligned_cols=23  Identities=17%  Similarity=0.489  Sum_probs=13.5

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHH
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQIL  113 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL  113 (179)
                      ...|+|+...    .||++|.+-..-|
T Consensus        29 gk~vlv~f~a----~~C~~c~~e~~~l   51 (167)
T PLN02412         29 GKVLLIVNVA----SKCGLTDSNYKEL   51 (167)
T ss_pred             CCEEEEEEeC----CCCCChHHHHHHH
Confidence            3445554443    5999998644434

>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]

Probab=81.54  E-value=0.66  Score=40.25  Aligned_cols=72  Identities=13%  Similarity=0.133  Sum_probs=58.0

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcC--CCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHc
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNIL--ENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKN  166 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~--~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~  166 (179)
                      .++|-.     |+.-.+++|+-++.++|++|+.+||+  ..+.....+.+......+|++.-+...|-..+++.++.+.
T Consensus        27 ~vLyhh-----pysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~~g~~II~d~tqIIdYvEr  100 (325)
T KOG4420|consen   27 LVLYHH-----PYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIHGDNIISDYTQIIDYVER  100 (325)
T ss_pred             ceeeec-----CcccccceeeeehhhcccccceeeccCccccccCchheecCCCCCCceEecCCeecccHHHHHHHHHH
Confidence            788888     57778999999999999999999985  3344445667777777899877777777899999998776

>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=80.81  E-value=3.5  Score=34.84  Aligned_cols=70  Identities=13%  Similarity=0.198  Sum_probs=48.6

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCC--eEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEee----cHHH
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAP--FETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGG----CDIT  160 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~--y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG----~del  160 (179)
                      ...|-||.--     .|--|...-+.|++.|.-  +..+|-...+.  .++++  +.-++|-||+||+.+-+    .+++
T Consensus        10 ~~~VkI~~Hk-----tC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f--~~~~~--~V~SvP~Vf~DGel~~~dpVdp~~i   80 (265)
T COG5494          10 EMEVKIFTHK-----TCVSSYMLFEYLENKGLLGKVKIIDAELPPF--LAFEK--GVISVPSVFIDGELVYADPVDPEEI   80 (265)
T ss_pred             heEEEEEEec-----chHHHHHHHHHHHhcCCCCCceEEEcCCChH--HHhhc--ceeecceEEEcCeEEEcCCCCHHHH
Confidence            3458889884     899999999999998873  55555433332  22222  45589999999999854    4566


Q ss_pred             HHHHH
Q 030327          161 VEAYK  165 (179)
Q Consensus       161 ~~l~~  165 (179)
                      ..+.+
T Consensus        81 es~~~   85 (265)
T COG5494          81 ESILS   85 (265)
T ss_pred             HHHHc
Confidence            65543

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=80.20  E-value=6.2  Score=33.25  Aligned_cols=35  Identities=11%  Similarity=0.236  Sum_probs=20.5

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHh-------cCCCeEEEEc
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKS-------LNAPFETVNI  125 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~-------~gv~y~~vdV  125 (179)
                      ...|+|+...    .||+.|..-...|.+       .|+.+.-|+.
T Consensus        99 GK~vvl~FwA----swCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~  140 (236)
T PLN02399         99 GKVLLIVNVA----SKCGLTSSNYSELSHLYEKYKTQGFEILAFPC  140 (236)
T ss_pred             CCeEEEEEEc----CCCcchHHHHHHHHHHHHHHhcCCcEEEEEec
Confidence            3445555554    699999875544433       3566655554

>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []

Probab=80.17  E-value=1.3  Score=34.49  Aligned_cols=56  Identities=18%  Similarity=0.239  Sum_probs=36.9

Q ss_pred             HHHHHHHhcCCCeEEEE-cCCCHHHHHHHHH------hcCCCCcceEeeCCE-EEeecHHHHHH
Q 030327          108 TVVQILKSLNAPFETVN-ILENEMLRQGLKE------YSSWPTFPQLYIEGE-FFGGCDITVEA  163 (179)
Q Consensus       108 ~ak~lL~~~gv~y~~vd-V~~d~~~~~~L~~------~sg~~tvP~VfIdG~-~IGG~del~~l  163 (179)
                      .+.+++.+.|++-..++ ..++++.++.+.+      ..|...+|.++|||+ .+-|.+.+-.+
T Consensus       125 vl~~~~~~~Gld~~~~~~~~~~~~~~~~~~~~~~~a~~~gv~GvP~~vv~g~~~~~G~~~~~~l  188 (193)
T PF01323_consen  125 VLAEIAEEAGLDPDEFDAALDSPEVKAALEEDTAEARQLGVFGVPTFVVNGKYRFFGADRLDEL  188 (193)
T ss_dssp             HHHHHHHHTT--HHHHHHHHTSHHHHHHHHHHHHHHHHTTCSSSSEEEETTTEEEESCSSHHHH
T ss_pred             HHHHHHHHcCCcHHHHHHHhcchHHHHHHHHHHHHHHHcCCcccCEEEECCEEEEECCCCHHHH
Confidence            47888899999765544 2344555444433      248899999999999 77787765544

The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	179
2lku_A	109	Solution Structure Of Reduced Poplar Apo Grxs14 Len		2e-53
3ipz_A	109	Crystal Structure Of Arabidopsis Monothiol Glutared		4e-48
2wul_A	118	Crystal Structure Of The Human Glutaredoxin 5 With		2e-25
3gx8_A	121	Structural And Biochemical Characterization Of Yeas		4e-24
2yan_A	105	Crystal Structure Of The Second Glutaredoxin Domain		5e-24
1yka_A	115	Solution Structure Of Grx4, A Monothiol Glutaredoxi		3e-23
2wci_A	135	Structure Of E. Coli Monothiol Glutaredoxin Grx4 Ho		3e-23
1wik_A	109	Solution Structure Of The Picot Homology 2 Domain O		8e-22
3zyw_A	111	Crystal Structure Of The First Glutaredoxin Domain		1e-20
1z7p_A	117	Solution Structure Of Reduced Glutaredoxin C1 From		2e-07
2e7p_A	116	Crystal Structure Of The Holo Form Of Glutaredoxin		3e-07
3fz9_A	112	Crystal Structure Of Poplar Glutaredoxin S12 In Com		2e-06
3h8q_A	114	Crystal Structure Of Glutaredoxin Domain Of Human T		7e-06
2ht9_A	146	The Structure Of Dimeric Human Glutaredoxin 2 Lengt		2e-04
2khp_A	92	Solution Structure Of Glutaredoxin From Brucella Me		8e-04

>pdb|2LKU|A Chain A, Solution Structure Of Reduced Poplar Apo Grxs14 Length = 109

Iteration: 1
 Score =  204 bits (519), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 95/108 (87%), Positives = 104/108 (96%)
Query: 72  ALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEML 131
           ALTP LK+TLDKVVT +KVVLFMKGTKDFPQCGFS TVVQILKSLNAPFE+VNILENE+L
Sbjct: 2   ALTPALKTTLDKVVTSHKVVLFMKGTKDFPQCGFSQTVVQILKSLNAPFESVNILENELL 61
Query: 132 RQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKALCT 179
           RQGLKEYSSWPTFPQLYI+GEFFGGCDITVEAYK+GELQE +EKA+C+
Sbjct: 62  RQGLKEYSSWPTFPQLYIDGEFFGGCDITVEAYKSGELQEQVEKAMCS 109

>pdb|3IPZ|A Chain A, Crystal Structure Of Arabidopsis Monothiol Glutaredoxin Atgr Length = 109

Iteration: 1
 Score =  187 bits (474), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 86/109 (78%), Positives = 99/109 (90%)
Query: 71  AALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEM 130
           +ALTP+LK TL+K+V   KVVLFMKGT+DFP CGFS+TVVQILK+LN PFE VNILENEM
Sbjct: 1   SALTPQLKDTLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEM 60
Query: 131 LRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKALCT 179
           LRQGLKEYS+WPTFPQLYI GEFFGGCDIT+EA+K GELQE +EKA+C+
Sbjct: 61  LRQGLKEYSNWPTFPQLYIGGEFFGGCDITLEAFKTGELQEEVEKAMCS 109

>pdb|2WUL|A Chain A, Crystal Structure Of The Human Glutaredoxin 5 With Bound Glutathione In An Fes Cluster Length = 118

Iteration: 1
 Score =  111 bits (277), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 50/98 (51%), Positives = 72/98 (73%), Gaps = 1/98 (1%)
Query: 79  STLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNA-PFETVNILENEMLRQGLKE 137
             LD +V  +KVV+F+KGT + PQCGFS+ VVQIL+      +   N+L++  LRQG+K+
Sbjct: 11  EQLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKD 70
Query: 138 YSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEK 175
           YS+WPT PQ+Y+ GEF GGCDI ++ ++NG+L E L+K
Sbjct: 71  YSNWPTIPQVYLNGEFVGGCDILLQMHQNGDLVEELKK 108

>pdb|3GX8|A Chain A, Structural And Biochemical Characterization Of Yeast Monothiol Glutaredoxin Grx5 Length = 121

Iteration: 1
 Score =  107 bits (267), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 48/107 (44%), Positives = 70/107 (65%), Gaps = 3/107 (2%)
Query: 73  LTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLN---APFETVNILENE 129
           L+ E++  ++  +    VVLFMKGT +FP+CGFS   + +L +     A F   N+LE+ 
Sbjct: 1   LSTEIRKAIEDAIESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDP 60
Query: 130 MLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKA 176
            LR+G+KE+S WPT PQLY+  EF GGCD+     ++GEL +LLE+A
Sbjct: 61  ELREGIKEFSEWPTIPQLYVNKEFIGGCDVITSMARSGELADLLEEA 107

>pdb|2YAN|A Chain A, Crystal Structure Of The Second Glutaredoxin Domain Of Human Txnl2 Length = 105

Iteration: 1
 Score =  107 bits (266), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 48/98 (48%), Positives = 67/98 (68%)
Query: 72  ALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEML 131
           ++ P+L+  L  +     V+LFMKG K   +CGFS  +++IL S    +ET +ILE+E +
Sbjct: 1   SMAPKLEERLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEV 60
Query: 132 RQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGEL 169
           RQGLK YS+WPT+PQLY++GE  GG DI  E  +NGEL
Sbjct: 61  RQGLKAYSNWPTYPQLYVKGELVGGLDIVKELKENGEL 98

>pdb|1YKA|A Chain A, Solution Structure Of Grx4, A Monothiol Glutaredoxin From E. Coli Length = 115

Iteration: 1
 Score =  104 bits (259), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 44/102 (43%), Positives = 70/102 (68%), Gaps = 3/102 (2%)
Query: 77  LKSTLDKV---VTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQ 133
           + +T++K+   +  N ++L+MKG+   P CGFS   VQ L +    F  V+IL+N  +R 
Sbjct: 1   MSTTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRA 60
Query: 134 GLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEK 175
            L +Y++WPTFPQL+++GE  GGCDI +E Y+ GELQ+L+++
Sbjct: 61  ELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKE 102

>pdb|2WCI|A Chain A, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer Length = 135

Iteration: 1
 Score =  104 bits (259), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 44/102 (43%), Positives = 70/102 (68%), Gaps = 3/102 (2%)
Query: 77  LKSTLDKV---VTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQ 133
           + +T++K+   +  N ++L+MKG+   P CGFS   VQ L +    F  V+IL+N  +R 
Sbjct: 21  MSTTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRA 80
Query: 134 GLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEK 175
            L +Y++WPTFPQL+++GE  GGCDI +E Y+ GELQ+L+++
Sbjct: 81  ELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKE 122

>pdb|1WIK|A Chain A, Solution Structure Of The Picot Homology 2 Domain Of The Mouse Pkc-Interacting Cousin Of Thioredoxin Protein Length = 109

Iteration: 1
 Score = 99.8 bits (247), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 49/94 (52%), Positives = 66/94 (70%), Gaps = 3/94 (3%)
Query: 83  KVVTGNK--VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSS 140
           KV+T NK  V+LFMKG K   +CGFS  +++IL S    +ET +ILE+E +RQGLK +S+
Sbjct: 9   KVLT-NKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSN 67
Query: 141 WPTFPQLYIEGEFFGGCDITVEAYKNGELQELLE 174
           WPT+PQLY+ G+  GG DI  E   NGEL  +L+
Sbjct: 68  WPTYPQLYVRGDLVGGLDIVKELKDNGELLPILK 101

>pdb|3ZYW|A Chain A, Crystal Structure Of The First Glutaredoxin Domain Of Human Glutaredoxin 3 (Glrx3) Length = 111

Iteration: 1
 Score = 95.5 bits (236), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 47/104 (45%), Positives = 62/104 (59%)
Query: 73  LTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLR 132
           +  +L   L K+      +LFMKGT   P+CGFS  +V+IL   N  F + +I  +E +R
Sbjct: 1   MKEDLNLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVR 60
Query: 133 QGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKA 176
           QGLK YSSWPT+PQLY+ GE  GG DI  E   + EL  +  KA
Sbjct: 61  QGLKAYSSWPTYPQLYVSGELIGGLDIIKELEASEELDTICPKA 104

>pdb|1Z7P|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus Tremula X Tremuloides Length = 117

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 11/110 (10%)
Query: 76  ELKSTLDK---VVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE---NE 129
           EL + L K   + +   VV+F K       CG+ + V Q+L  + A ++ V + E     
Sbjct: 6   ELDAALKKAKELASSAPVVVFSK-----TYCGYCNRVKQLLTQVGASYKVVELDELSDGS 60
Query: 130 MLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKALCT 179
            L+  L  ++   T P ++I G+  GGCD  VE ++  EL  LL+ A  T
Sbjct: 61  QLQSALAHWTGRGTVPNVFIGGKQIGGCDTVVEKHQRNELLPLLQDAAAT 110

>pdb|2E7P|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From Populus Tremula X Tremuloides Length = 116

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 11/110 (10%)
Query: 76  ELKSTLDK---VVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE---NE 129
           EL + L K   + +   VV+F K       CG+ + V Q+L  + A ++ V + E     
Sbjct: 5   ELDAALKKAKELASSAPVVVFSK-----TYCGYCNRVKQLLTQVGASYKVVELDELSDGS 59
Query: 130 MLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKALCT 179
            L+  L  ++   T P ++I G+  GGCD  VE ++  EL  LL+ A  T
Sbjct: 60  QLQSALAHWTGRGTVPNVFIGGKQIGGCDTVVEKHQRNELLPLLQDAAAT 109

>pdb|3FZ9|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex With Glutathione Length = 112

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 13/112 (11%)
Query: 71  AALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEM 130
           A+    L+  + K V  N VV++ K       C +S  V  + K LN     V +  +E+
Sbjct: 1   ASFGSRLEDAVKKTVAENPVVVYSK-----TWCSYSSEVKSLFKRLNVDPLVVEL--DEL 53
Query: 131 LRQG------LKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKA 176
             QG      L+  +   T P ++I G+  GGC  TV+ Y+ GEL+ LL +A
Sbjct: 54  GAQGPQIQKVLERLTGQHTVPNVFIGGKHIGGCTDTVKLYRKGELEPLLSEA 105

>pdb|3H8Q|A Chain A, Crystal Structure Of Glutaredoxin Domain Of Human Thioredoxin Reductase 3 Length = 114

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 14/109 (12%)
Query: 75  PELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQG 134
            EL+  L  ++  ++VV+F K       C  S  V ++  SL       N+LE + +  G
Sbjct: 4   EELRRHLVGLIERSRVVIFSKSY-----CPHSTRVKELFSSLGVE---CNVLELDQVDDG 55
Query: 135 ------LKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKAL 177
                 L E ++  T P +++     GGCD T +AY++G LQ+LL++ L
Sbjct: 56  ARVQEVLSEITNQKTVPNIFVNKVHVGGCDQTFQAYQSGLLQKLLQEDL 104

>pdb|2HT9|A Chain A, The Structure Of Dimeric Human Glutaredoxin 2 Length = 146

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 62/129 (48%), Gaps = 12/129 (9%)
Query: 50  TNNLRLLGVKSNKATTFRCLAAALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTV 109
           T NL    ++SN +++   LA A   +++ T    ++ N VV+F K +     C +    
Sbjct: 15  TENLYFQSMESNTSSSLENLATAPVNQIQET----ISDNCVVIFSKTS-----CSYCTMA 65
Query: 110 VQILKSLNAPFETV--NILE-NEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKN 166
            ++   +N  ++ V  ++LE     +  L + +   T P++++ G F GG   T   +K 
Sbjct: 66  KKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKE 125
Query: 167 GELQELLEK 175
           G+L  L+ +
Sbjct: 126 GKLLPLVHQ 134

>pdb|2KHP|A Chain A, Solution Structure Of Glutaredoxin From Brucella Melitensis Length = 92

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 32/74 (43%)
Query: 101 PQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDIT 160
           P C +      +L    A F  ++      LR  ++E S   TFPQ++I     GGCD  
Sbjct: 14  PGCPYCARAKALLARKGAEFNEIDASATPELRAEMQERSGRNTFPQIFIGSVHVGGCDDL 73
Query: 161 VEAYKNGELQELLE 174
                 G+L  LL+
Sbjct: 74  YALEDEGKLDSLLK 87

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	179
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	2e-66
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	5e-64
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	6e-64
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	7e-63
3gx8_A	121	Monothiol glutaredoxin-5, mitochondrial; TRX fold,	6e-62
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	9e-61
2wem_A	118	Glutaredoxin-related protein 5; chromosome 14 open	1e-60
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	1e-35
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	9e-25
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	9e-24
1kte_A	105	Thioltransferase; redox-active center, electron tr	1e-22
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	1e-18
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	1e-17
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	4e-17
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	5e-17
2jad_A	362	Yellow fluorescent protein glutaredoxin fusion pro	8e-17
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	1e-16
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	1e-16
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	3e-16
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	3e-16
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	8e-15
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	4e-14
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	3e-13
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	2e-11
1u6t_A	121	SH3 domain-binding glutamic acid-rich-like protein	1e-10
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	2e-10
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	8e-09
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	2e-08
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	4e-08
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	3e-07
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	1e-06
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	3e-06
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	3e-05
1z9h_A	290	Membrane-associated prostaglandin E synthase-2; me	7e-04

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} Length = 109

 Score =  197 bits (503), Expect = 2e-66
 Identities = 86/109 (78%), Positives = 99/109 (90%)

Query: 71  AALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEM 130
           +ALTP+LK TL+K+V   KVVLFMKGT+DFP CGFS+TVVQILK+LN PFE VNILENEM
Sbjct: 1   SALTPQLKDTLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEM 60

Query: 131 LRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKALCT 179
           LRQGLKEYS+WPTFPQLYI GEFFGGCDIT+EA+K GELQE +EKA+C+
Sbjct: 61  LRQGLKEYSNWPTFPQLYIGGEFFGGCDITLEAFKTGELQEEVEKAMCS 109

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens} Length = 105

 Score =  191 bits (487), Expect = 5e-64
 Identities = 49/104 (47%), Positives = 69/104 (66%)

Query: 72  ALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEML 131
           ++ P+L+  L  +     V+LFMKG K   +CGFS  +++IL S    +ET +ILE+E +
Sbjct: 1   SMAPKLEERLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEV 60

Query: 132 RQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEK 175
           RQGLK YS+WPT+PQLY++GE  GG DI  E  +NGEL  +L  
Sbjct: 61  RQGLKAYSNWPTYPQLYVKGELVGGLDIVKELKENGELLPILRG 104

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens} Length = 111

 Score =  191 bits (487), Expect = 6e-64
 Identities = 47/104 (45%), Positives = 62/104 (59%)

Query: 73  LTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLR 132
           +  +L   L K+      +LFMKGT   P+CGFS  +V+IL   N  F + +I  +E +R
Sbjct: 1   MKEDLNLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVR 60

Query: 133 QGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKA 176
           QGLK YSSWPT+PQLY+ GE  GG DI  E   + EL  +  KA
Sbjct: 61  QGLKAYSSWPTYPQLYVSGELIGGLDIIKELEASEELDTICPKA 104

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1 Length = 109

 Score =  188 bits (480), Expect = 7e-63
 Identities = 46/101 (45%), Positives = 63/101 (62%)

Query: 76  ELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGL 135
              S L  +     V+LFMKG K   +CGFS  +++IL S    +ET +ILE+E +RQGL
Sbjct: 3   SGSSGLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGL 62

Query: 136 KEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKA 176
           K +S+WPT+PQLY+ G+  GG DI  E   NGEL  +L+  
Sbjct: 63  KTFSNWPTYPQLYVRGDLVGGLDIVKELKDNGELLPILKGE 103

>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae} Length = 121

 Score =  186 bits (475), Expect = 6e-62
 Identities = 48/107 (44%), Positives = 70/107 (65%), Gaps = 3/107 (2%)

Query: 73  LTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLN---APFETVNILENE 129
           L+ E++  ++  +    VVLFMKGT +FP+CGFS   + +L +     A F   N+LE+ 
Sbjct: 1   LSTEIRKAIEDAIESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDP 60

Query: 130 MLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKA 176
            LR+G+KE+S WPT PQLY+  EF GGCD+     ++GEL +LLE+A
Sbjct: 61  ELREGIKEFSEWPTIPQLYVNKEFIGGCDVITSMARSGELADLLEEA 107

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A Length = 135

 Score =  184 bits (468), Expect = 9e-61
 Identities = 42/101 (41%), Positives = 65/101 (64%)

Query: 76  ELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGL 135
                + + +  N ++L+MKG+   P CGFS   VQ L +    F  V+IL+N  +R  L
Sbjct: 23  TTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAEL 82

Query: 136 KEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKA 176
            +Y++WPTFPQL+++GE  GGCDI +E Y+ GELQ+L+++ 
Sbjct: 83  PKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKET 123

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A Length = 116

 Score =  119 bits (301), Expect = 1e-35
 Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 11/107 (10%)

Query: 76  ELKSTLDKV---VTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENE--- 129
           EL + L K     +   VV+F K       CG+ + V Q+L  + A ++ V + E     
Sbjct: 5   ELDAALKKAKELASSAPVVVFSK-----TYCGYCNRVKQLLTQVGASYKVVELDELSDGS 59

Query: 130 MLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKA 176
            L+  L  ++   T P ++I G+  GGCD  VE ++  EL  LL+ A
Sbjct: 60  QLQSALAHWTGRGTVPNVFIGGKQIGGCDTVVEKHQRNELLPLLQDA 106

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} Length = 114

 Score = 91.9 bits (229), Expect = 9e-25
 Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 8/106 (7%)

Query: 74  TPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNI---LENEM 130
             EL+  L  ++  ++VV+F K       C  S  V ++  SL      + +    +   
Sbjct: 3   REELRRHLVGLIERSRVVIFSKSY-----CPHSTRVKELFSSLGVECNVLELDQVDDGAR 57

Query: 131 LRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKA 176
           +++ L E ++  T P +++     GGCD T +AY++G LQ+LL++ 
Sbjct: 58  VQEVLSEITNQKTVPNIFVNKVHVGGCDQTFQAYQSGLLQKLLQED 103

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A* Length = 118

 Score = 89.3 bits (222), Expect = 9e-24
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 74  TPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKS-LNAPFETVNILENEMLR 132
           + E    +  ++  N++ +  K       C + H  +  L   L  P   V +L+   ++
Sbjct: 11  SQETIKHVKDLIAENEIFVASKTY-----CPYCHAALNTLFEKLKVPRSKVLVLQLNDMK 65

Query: 133 QG------LKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKAL 177
           +G      L E +   T P +YI G+  GG D   E  + GEL+ELLE  L
Sbjct: 66  EGADIQAALYEINGQRTVPNIYINGKHIGGNDDLQELRETGELEELLEPIL 116

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A* Length = 105

 Score = 86.1 bits (214), Expect = 1e-22
 Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 11/105 (10%)

Query: 78  KSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE------NEML 131
           ++ ++  +   KVV+F+K     P C F     ++L  L      +  ++         +
Sbjct: 2   QAFVNSKIQPGKVVVFIK-----PTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEI 56

Query: 132 RQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKA 176
           +  L++ +   T P+++I  E  GGC      +K GEL   L++ 
Sbjct: 57  QDYLQQLTGARTVPRVFIGKECIGGCTDLESMHKRGELLTRLQQV 101

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A* Length = 113

 Score = 75.7 bits (187), Expect = 1e-18
 Identities = 27/110 (24%), Positives = 54/110 (49%), Gaps = 9/110 (8%)

Query: 71  AALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEM 130
           A+    ++ ++ K VT N VV++   +K +  C +   V  + K L      V + +   
Sbjct: 2   ASFGSRMEESIRKTVTENTVVIY---SKTW--CSYCTEVKTLFKRLGVQPLVVELDQLGP 56

Query: 131 ----LRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKA 176
               L++ L+  +   T P +++ G+  GGC  TV+  + G+L+ +L +A
Sbjct: 57  QGPQLQKVLERLTGQHTVPNVFVCGKHIGGCTDTVKLNRKGDLELMLAEA 106

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A* Length = 146

 Score = 74.4 bits (183), Expect = 1e-17
 Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 8/107 (7%)

Query: 73  LTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNI--LENEM 130
           L     + + + ++ N VV+F K +     C +     ++   +N  ++ V +  LE   
Sbjct: 34  LATAPVNQIQETISDNCVVIFSKTS-----CSYCTMAKKLFHDMNVNYKVVELDLLEYGN 88

Query: 131 LRQG-LKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKA 176
             Q  L + +   T P++++ G F GG   T   +K G+L  L+ + 
Sbjct: 89  QFQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQC 135

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 130

 Score = 72.4 bits (178), Expect = 4e-17
 Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 8/107 (7%)

Query: 73  LTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNI--LENEM 130
           L     + + + ++ N VV+F   +K    C +     ++   +N  ++ V +  LE   
Sbjct: 12  LATAPVNQIQETISDNCVVIF---SKTS--CSYCTMAKKLFHDMNVNYKVVELDLLEYGN 66

Query: 131 LRQG-LKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKA 176
             Q  L + +   T P++++ G F GG   T   +K G+L  L+ + 
Sbjct: 67  QFQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQC 113

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae} Length = 127

 Score = 72.4 bits (178), Expect = 5e-17
 Identities = 20/107 (18%), Positives = 44/107 (41%), Gaps = 11/107 (10%)

Query: 76  ELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQG- 134
            ++     ++  + +++F K T     C +S  + ++L++         I+E +    G 
Sbjct: 2   NVQKEYSLILDLSPIIIFSKST-----CSYSKGMKELLENEYQFIPNYYIIELDKHGHGE 56

Query: 135 -----LKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKA 176
                +K  +   T P L + G   GG +   + +  G+L E L+  
Sbjct: 57  ELQEYIKLVTGRGTVPNLLVNGVSRGGNEEIKKLHTQGKLLESLQVW 103

>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron transport, redox- active center, yeast, GRX1P, transport; HET: PIA; 2.7A {Aequorea victoria} Length = 362

 Score = 75.5 bits (185), Expect = 8e-17
 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 12/110 (10%)

Query: 74  TPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKS-LNAPFETVNILENEMLR 132
           + E    +  ++  N++ +  K       C +SH  +  L   L  P   V +L+   ++
Sbjct: 247 SQETIKHVKDLIAENEIFVASKTY-----CPYSHAALNTLFEKLKVPRSKVLVLQLNDMK 301

Query: 133 QG------LKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKA 176
           +G      L E +   T P +YI G+  GG D   E  + GEL+ELLE  
Sbjct: 302 EGADIQAALYEINGQRTVPNIYINGKHIGGNDDLQELRETGELEELLEPI 351

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A* Length = 129

 Score = 71.6 bits (176), Expect = 1e-16
 Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 12/109 (11%)

Query: 74  TPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQIL-KSLNAPFETVNILE-NEM- 130
           + E  + +  ++   +V +  K       C +    +  L + LN P     +LE +EM 
Sbjct: 23  SQETVAHVKDLIGQKEVFVAAKTY-----CPYCKATLSTLFQELNVPKSKALVLELDEMS 77

Query: 131 ----LRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEK 175
               ++  L+E S   T P +YI G+  GG        KNG+L E+L+ 
Sbjct: 78  NGSEIQDALEEISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEILKP 126

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis} Length = 92

 Score = 70.3 bits (173), Expect = 1e-16
 Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 5/88 (5%)

Query: 89  KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLY 148
            V+++ +     P C +      +L    A F  ++      LR  ++E S   TFPQ++
Sbjct: 7   DVIIYTR-----PGCPYCARAKALLARKGAEFNEIDASATPELRAEMQERSGRNTFPQIF 61

Query: 149 IEGEFFGGCDITVEAYKNGELQELLEKA 176
           I     GGCD        G+L  LL+  
Sbjct: 62  IGSVHVGGCDDLYALEDEGKLDSLLKTG 89

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A* Length = 82

 Score = 68.7 bits (169), Expect = 3e-16
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 5/86 (5%)

Query: 89  KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLY 148
            V ++ K       C + H    +L S    F+ + I  N   R+ + + S   T PQ++
Sbjct: 2   NVEIYTK-----ETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIF 56

Query: 149 IEGEFFGGCDITVEAYKNGELQELLE 174
           I+ +  GG D        G L  LL+
Sbjct: 57  IDAQHIGGYDDLYALDARGGLDPLLK 82

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B Length = 114

 Score = 69.6 bits (171), Expect = 3e-16
 Identities = 20/105 (19%), Positives = 40/105 (38%), Gaps = 11/105 (10%)

Query: 78  KSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEM------L 131
           +  + + +  NKV +F+K T     C F    + IL   +       I++ +       L
Sbjct: 9   EEFVQQRLANNKVTIFVKYT-----CPFCRNALDILNKFSFKRGAYEIVDIKEFKPENEL 63

Query: 132 RQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKA 176
           R   ++ +   T P+++      GG    +E      L ++L   
Sbjct: 64  RDYFEQITGGKTVPRIFFGKTSIGGYSDLLEIDNMDALGDILSSI 108

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} Length = 99

 Score = 65.7 bits (161), Expect = 8e-15
 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 6/88 (6%)

Query: 88  NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQG-LKEYSSWPTFPQ 146
            K+ ++   T     C F    + +LK     F+   I  +   R+      +   + PQ
Sbjct: 16  AKIEIYTWST-----CPFCMRALALLKRKGVEFQEYCIDGDNEAREAMAARANGKRSLPQ 70

Query: 147 LYIEGEFFGGCDITVEAYKNGELQELLE 174
           ++I+ +  GGCD        G+L  LL 
Sbjct: 71  IFIDDQHIGGCDDIYALDGAGKLDPLLH 98

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A Length = 93

 Score = 63.6 bits (155), Expect = 4e-14
 Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 9/91 (9%)

Query: 89  KVVLFMKGT----KDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWP-- 142
            + ++        +   Q      V +IL      ++ V+I ++  LR  ++  +  P  
Sbjct: 3   GLRVYSTSVTGSREIKSQQ---SEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKA 59

Query: 143 TFPQLYIEGEFFGGCDITVEAYKNGELQELL 173
           T PQ+     + G  ++ VEA +   LQE L
Sbjct: 60  TPPQIVNGNHYCGDYELFVEAVEQDTLQEFL 90

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae} Length = 89

 Score = 61.0 bits (149), Expect = 3e-13
 Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 12/90 (13%)

Query: 88  NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNI---LENEMLRQGLKEYSSWPTF 144
            +++L+ +     P C +      +L      +  ++    L  EM+    +  +   TF
Sbjct: 6   KEIILYTR-----PNCPYCKRARDLLDKKGVKYTDIDASTSLRQEMV----QRANGRNTF 56

Query: 145 PQLYIEGEFFGGCDITVEAYKNGELQELLE 174
           PQ++I     GGCD        G+L  LL+
Sbjct: 57  PQIFIGDYHVGGCDDLYALENKGKLDSLLQ 86

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 111

 Score = 56.9 bits (137), Expect = 2e-11
 Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 14/87 (16%)

Query: 101 PQCGFSHT------VVQILKSLNAPFETVNILENEMLRQGLKEYSS--------WPTFPQ 146
              GF         VV+ L++    FE V+I  +E  RQ + +            P  PQ
Sbjct: 16  SSSGFVAIKKKQQDVVRFLEANKIEFEEVDITMSEEQRQWMYKNVPPEKKPTQGNPLPPQ 75

Query: 147 LYIEGEFFGGCDITVEAYKNGELQELL 173
           ++    + G  D   E+ ++  +   L
Sbjct: 76  IFNGDRYCGDYDSFFESKESNTVFSFL 102

>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A Length = 121

 Score = 55.4 bits (133), Expect = 1e-10
 Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 14/87 (16%)

Query: 101 PQCGFSHT------VVQILKSLNAPFETVNILENEMLRQGLKE--------YSSWPTFPQ 146
              G +        V+  L++    FE  +I  NE  R+ ++E         + +P  PQ
Sbjct: 8   SSSGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVPENSRPATGYPLPPQ 67

Query: 147 LYIEGEFFGGCDITVEAYKNGELQELL 173
           ++ E ++ G  D   EA +N  +   L
Sbjct: 68  IFNESQYRGDYDAFFEARENNAVYAFL 94

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* Length = 598

 Score = 57.3 bits (139), Expect = 2e-10
 Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 8/106 (7%)

Query: 74  TPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEM--- 130
                  L K V    V+LF K T     C +   V  +L        T+ + +      
Sbjct: 4   ADGTSQWLRKTVDSAAVILFSKTT-----CPYCKKVKDVLAEAKIKHATIELDQLSNGSA 58

Query: 131 LRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKA 176
           +++ L  +S   T PQ+++ G+F G     ++ Y N EL  ++ ++
Sbjct: 59  IQKCLASFSKIETVPQMFVRGKFIGDSQTVLKYYSNDELAGIVNES 104

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus} Length = 92

 Score = 49.6 bits (119), Expect = 8e-09
 Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 17/90 (18%)

Query: 89  KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNI-----LENEMLRQGLKEYSSWPT 143
           +V+++   T     C      ++ LK     FE + I      E + + + +   S   +
Sbjct: 13  EVLMYGLST-----CPHCKRTLEFLKREGVDFEVIWIDKLEGEERKKVIEKVHSISGSYS 67

Query: 144 FPQLYIEGEFFGGCDITVEAYKNGELQELL 173
            P +    +   G +         +L+EL+
Sbjct: 68  VPVVVKGDKHVLGYN-------EEKLKELI 90

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A* Length = 89

 Score = 48.4 bits (116), Expect = 2e-08
 Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 21/96 (21%)

Query: 89  KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN-------EMLRQGLKEYSSW 141
           KV ++ +       C +     Q  +  N  F+   I +        + + Q  K     
Sbjct: 5   KVKIYTR-----NGCPYCVWAKQWFEENNIAFDETIIDDYAQRSKFYDEMNQSGKVIFPI 59

Query: 142 PTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKAL 177
            T PQ++I+ E  GG           EL+   +K L
Sbjct: 60  STVPQIFIDDEHIGGFT---------ELKANADKIL 86

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A Length = 85

 Score = 47.6 bits (114), Expect = 4e-08
 Identities = 13/96 (13%), Positives = 38/96 (39%), Gaps = 21/96 (21%)

Query: 89  KVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYS--SW 141
           + V+F +       C +      + + L     +  ++ V+I    + ++ L++ +    
Sbjct: 2   QTVIFGR-----SGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPV 56

Query: 142 PTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKAL 177
            T PQ++++ +  GG           +    +++ L
Sbjct: 57  ETVPQIFVDQQHIGGYT---------DFAAWVKENL 83

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1 Length = 81

 Score = 45.4 bits (108), Expect = 3e-07
 Identities = 8/70 (11%), Positives = 24/70 (34%), Gaps = 6/70 (8%)

Query: 89  KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLY 148
           ++ ++ +       C   H   + +++    FE +N+       + L+    +   P + 
Sbjct: 2   RITIYTR-----NDCVQCHATKRAMENRGFDFEMINVDRVPEAAEALRA-QGFRQLPVVI 55

Query: 149 IEGEFFGGCD 158
                + G  
Sbjct: 56  AGDLSWSGFR 65

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A Length = 87

 Score = 44.0 bits (104), Expect = 1e-06
 Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 20/89 (22%)

Query: 97  TKDFPQCGFSHTVVQILKSLNAPFETVNILEN----------EMLRQGLKEYSSWPTFPQ 146
             +  +CG      ++L     PFE +NI+            E+L +  ++     T PQ
Sbjct: 8   DSNIHKCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQ 67

Query: 147 LYIE-GEFFGGCDITVEAYKNGELQELLE 174
           ++   G   GG D         +L+E  +
Sbjct: 68  VFAPDGSHIGGFD---------QLREYFK 87

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1 Length = 75

 Score = 42.6 bits (101), Expect = 3e-06
 Identities = 12/73 (16%), Positives = 28/73 (38%), Gaps = 8/73 (10%)

Query: 101 PQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDIT 160
           P C       + L      + TV+I  ++  R  +     +   P + ++GE + G    
Sbjct: 9   PACVQCTATKKALDRAGLAYNTVDISLDDEARDYVMAL-GYVQAPVVEVDGEHWSG---- 63

Query: 161 VEAYKNGELQELL 173
              ++   +++L 
Sbjct: 64  ---FRPERIKQLQ 73

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei} Length = 103

 Score = 40.1 bits (94), Expect = 3e-05
 Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 18/92 (19%)

Query: 88  NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNI-----LENEMLRQGLKEYSSWP 142
            KV+++         C +     ++L  L   F+ V +      E E   + ++ ++   
Sbjct: 22  GKVIMYGL-----STCVWCKKTKKLLTDLGVDFDYVYVDRLEGKEEEEAVEEVRRFNPSV 76

Query: 143 TFPQLYIEGE-FFGGCDITVEAYKNGELQELL 173
           +FP   I  E    G           E++E L
Sbjct: 77  SFPTTIINDEKAIVGFKEK-------EIRESL 101

>1z9h_A Membrane-associated prostaglandin E synthase-2; membran associated protein, indomethacin, isomerase; HET: IMN; 2.60A {Macaca fascicularis} SCOP: a.45.1.1 c.47.1.5 PDB: 2pbj_A* Length = 290

 Score = 37.9 bits (87), Expect = 7e-04
 Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 8/75 (10%)

Query: 76  ELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGL 135
           E  +    + +  ++ L+      +  C F   V   L     P++ V +  N +LR  +
Sbjct: 1   ERSAVQLSLSSRLQLTLYQ-----YKTCPFCSKVRAFLDFHALPYQVVEV--NPVLRAEI 53

Query: 136 KEYSSWPTFPQLYIE 150
           K  SS+   P L  +
Sbjct: 54  KF-SSYRKVPILVAQ 67

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	179
2wul_A	118	Glutaredoxin related protein 5; chromosome 14 open	100.0
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	99.98
3gx8_A	121	Monothiol glutaredoxin-5, mitochondrial; TRX fold,	99.97
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	99.97
2wem_A	118	Glutaredoxin-related protein 5; chromosome 14 open	99.97
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	99.95
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	99.95
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	99.94
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	99.94
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	99.93
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	99.93
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	99.92
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	99.91
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	99.91
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	99.9
1kte_A	105	Thioltransferase; redox-active center, electron tr	99.89
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	99.89
2jad_A	362	Yellow fluorescent protein glutaredoxin fusion pro	99.88
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	99.88
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	99.87
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	99.87
1u6t_A	121	SH3 domain-binding glutamic acid-rich-like protein	99.86
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	99.84
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	99.83
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	99.82
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	99.8
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	99.8
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	99.74
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	99.72
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	99.7
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	99.64
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	99.62
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	99.61
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	99.6
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	99.58
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	99.55
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	99.31
1ttz_A	87	Conserved hypothetical protein; structural genomic	99.31
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	99.27
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	99.22
2axo_A	270	Hypothetical protein ATU2684; alpha beta protein.,	99.01
1rw1_A	114	Conserved hypothetical protein YFFB; thioredoxin f	98.91
1z3e_A	132	Regulatory protein SPX; bacterial transcription re	98.88
2kok_A	120	Arsenate reductase; brucellosis, zoonotic, oxidore	98.87
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	98.69
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.6
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	98.59
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	98.54
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	98.46
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	98.44
3l78_A	120	Regulatory protein SPX; transcription, transcripti	98.43
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	98.4
1s3c_A	141	Arsenate reductase; ARSC, arsenite, oxidoreductase	98.38
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	98.35
3fz4_A	120	Putative arsenate reductase; APC61768, structural	98.32
3rdw_A	121	Putative arsenate reductase; structural genomics,	98.32
3gkx_A	120	Putative ARSC family related protein; ARSC family	98.31
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	98.31
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	98.3
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	98.3
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	98.29
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	98.29
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	98.27
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	98.27
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	98.27
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	98.25
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	98.25
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	98.23
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	98.22
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	98.22
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	98.21
3ir4_A	218	Glutaredoxin 2; glutathione, IDP00895, structural	98.2
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	98.2
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	98.18
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	98.18
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	98.12
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	98.12
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	98.1
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	98.09
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	98.09
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	98.09
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	98.09
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	98.09
3f0i_A	119	Arsenate reductase; structural genomics, IDP01300,	98.09
3fy7_A	250	Chloride intracellular channel protein 3; GST, glu	98.07
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	98.06
2r4v_A	247	XAP121, chloride intracellular channel protein 2;	98.04
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	98.03
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	98.02
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	98.02
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	98.0
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	97.99
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	97.98
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	97.97
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	97.97
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	97.96
4hoj_A	210	REGF protein; GST, glutathione S-transferase, enzy	97.95
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	97.95
2cz2_A	223	Maleylacetoacetate isomerase; structural genomics,	97.94
3lyp_A	215	Stringent starvation protein A; structural genomic	97.92
3bby_A	215	Uncharacterized GST-like protein YFCF; NP_416804.1	97.92
1k0m_A	241	CLIC1, NCC27, chloride intracellular channel prote	97.92
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	97.92
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	97.92
2ahe_A	267	Chloride intracellular channel protein 4; glutathi	97.91
4g10_A	265	Glutathione S-transferase homolog; thioredoxin fol	97.9
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	97.9
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	97.9
1axd_A	209	Glutathione S-transferase I; transferase, herbicid	97.9
4hi7_A	228	GI20122; GST, glutathione S-transferase, enzyme fu	97.9
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	97.89
2l57_A	126	Uncharacterized protein; structural genomics, unkn	97.89
1yy7_A	213	SSPA, stringent starvation protein A; GST fold, tr	97.89
1zl9_A	207	GST class-sigma, glutathione S-transferase 5; glut	97.88
1pn9_A	209	GST class-delta, glutathione S-transferase 1-6; pr	97.88
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	97.88
2on7_A	206	Nagst-1, Na glutathione S-transferase 1; hookworm;	97.87
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	97.87
3vln_A	241	GSTO-1, glutathione S-transferase omega-1; GST fol	97.87
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	97.86
1oyj_A	231	Glutathione S-transferase; herbicide detoxificatio	97.86
3lyk_A	216	Stringent starvation protein A homolog; structural	97.86
1e6b_A	221	Glutathione S-transferase; 1.65A {Arabidopsis thal	97.85
2imi_A	221	Epsilon-class glutathione S-transferase; HET: GSH;	97.85
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	97.85
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	97.84
1tw9_A	206	Glutathione S-transferase 2; 1.71A {Heligmosomoide	97.84
1v2a_A	210	Glutathione transferase GST1-6; glutathione S-tran	97.84
1gnw_A	211	Glutathione S-transferase; herbicide detoxificatio	97.84
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	97.83
3qav_A	243	RHO-class glutathione S-transferase; cytosol; 2.10	97.83
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	97.83
4iel_A	229	Glutathione S-transferase, N-terminal domain PROT;	97.83
1gwc_A	230	Glutathione S-transferase TSI-1; herbicide detoxif	97.83
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	97.82
3n5o_A	235	Glutathione transferase; seattle structural genomi	97.82
2a2r_A	210	Glutathione S-transferase P; detoxification, nitri	97.82
2on5_A	206	Nagst-2, Na glutathione S-transferase 2; hookworm;	97.82
2cvd_A	198	Glutathione-requiring prostaglandin D synthase; gl	97.82
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	97.82
2v6k_A	214	Maleylpyruvate isomerase; glutathione-S-transferas	97.81
2ws2_A	204	NU-class GST, glutathione S-transferase; parasite,	97.8
2vo4_A	219	2,4-D inducible glutathione S-transferase; herbici	97.79
3lxz_A	229	Glutathione S-transferase family protein; structur	97.79
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	97.78
3ay8_A	216	Glutathione S-transferase; GST fold, GST binding,	97.78
1yq1_A	208	Glutathione S-transferase; nematoda, structural ge	97.78
1okt_A	211	Glutathione S-transferase; GST; 1.9A {Plasmodium f	97.78
1aw9_A	216	Glutathione S-transferase III; herbicide detoxific	97.77
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	97.76
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	97.76
4f03_A	253	Glutathione transferase; GST fold; 1.80A {Phaneroc	97.75
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	97.74
2qsi_A	137	Putative hydrogenase expression/formation protein;	97.74
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	97.73
2c3n_A	247	Glutathione S-transferase theta 1; glutathione tra	97.72
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	97.72
3q18_A	239	GSTO-2, glutathione S-transferase omega-2; glutath	97.72
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	97.71
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	97.71
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	97.71
3rbt_A	246	Glutathione transferase O1; glutathione S-transfer	97.7
2hnl_A	225	Glutathione S-transferase 1; prostaglandin synthas	97.7
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	97.7
3m3m_A	210	Glutathione S-transferase; PSI-II, structural geno	97.7
4dej_A	231	Glutathione S-transferase related protein; transfe	97.68
1r5a_A	218	Glutathione transferase; glutathione S-transferase	97.68
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	97.67
3f6d_A	219	Adgstd4-4, glutathione transferase GST1-4; HET: GT	97.67
3m8n_A	225	Possible glutathione S-transferase; PSI-II, struct	97.66
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	97.66
4ags_A	471	Thiol-dependent reductase 1; transferase, leishman	97.66
2gsq_A	202	Squid GST, glutathione S-transferase; squid digest	97.66
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	97.66
1ljr_A	244	HGST T2-2, glutathione S-transferase; HET: GSH; 3.	97.66
1z9h_A	290	Membrane-associated prostaglandin E synthase-2; me	97.66
3ein_A	209	GST class-theta, glutathione S-transferase 1-1; de	97.63
3ibh_A	233	GST-II, saccharomyces cerevisiae GTT2; glutathione	97.63
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	97.62
2wb9_A	211	Glutathione transferase sigma class; thioredoxin f	97.62
3ic8_A	310	Uncharacterized GST-like proteinprotein; glutathio	97.62
4hz2_A	230	Glutathione S-transferase domain; glutathione,enzy	97.62
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	97.61
3vk9_A	216	Glutathione S-transferase delta; glutathione bindi	97.61
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	97.61
3m0f_A	213	Uncharacterized protein GST_N; PSI-2, NYSGXRC, glu	97.61
1k0d_A	260	URE2 protein; nitrate assimilation, structural gen	97.59
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	97.59
1mek_A	120	Protein disulfide isomerase; electron transport, r	97.58
2kuc_A	130	Putative disulphide-isomerase; structural genomics	97.57
3ubk_A	242	Glutathione transferase; GSH binding; 1.95A {Lepto	97.57
3niv_A	222	Glutathione S-transferase; structural genomics, PS	97.56
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	97.56
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	97.56
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	97.55
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	96.69
1k3y_A	221	GSTA1-1, glutathione S-transferase A1; S-hexyl glu	97.54
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	97.54
4glt_A	225	Glutathione S-transferase-like protein; structural	97.54
3r2q_A	202	Uncharacterized GST-like protein YIBF; transferase	97.53
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	97.52
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	97.52
1vf1_A	229	Glutathione S-transferase 3; detoxification; HET:	97.51
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	97.51
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	97.48
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	97.46
4exj_A	238	Uncharacterized protein; transferase-like protein,	97.45
1m0u_A	249	GST2 gene product; flight muscle protein, sigma, t	97.41
1tu7_A	208	Glutathione S-transferase 2; HET: GSH; 1.50A {Onch	97.41
1nhy_A	219	EF-1-gamma 1, elongation factor 1-gamma 1; protein	97.41
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	97.41
3gtu_B	224	Glutathione S-transferase; conjugation, detoxifica	97.39
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	97.39
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	97.37
3ik7_A	222	Glutathione S-transferase A4; human GST A4-4, enzy	97.37
3tou_A	226	Glutathione S-transferase protein; GSH binding sit	97.36
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	97.36
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	97.34
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	97.34
1b48_A	221	GST, mgsta4-4, protein (glutathione S-transferase)	97.32
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	96.42
4ikh_A	244	Glutathione S-transferase; enzyme function initiat	97.3
3cbu_A	214	Probable GST-related protein; thioredoxin fold, GS	97.3
2ycd_A	230	Glutathione S-transferase; SOIL bacteria, herbicid	97.3
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	97.29
4ags_A	471	Thiol-dependent reductase 1; transferase, leishman	97.29
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	97.29
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	97.26
2yv9_A	291	Chloride intracellular channel EXC-4; chloride ION	97.26
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	97.24
3ira_A	173	Conserved protein; methanosarcina mazei,structural	97.23
3gx0_A	215	GST-like protein YFCG; transferase, glutathione, g	97.23
2yv7_A	260	CG10997-PA, LD46306P, CLIC; dmclic, chloride ION c	97.22
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	97.21
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	97.21
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	97.21
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	97.19
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	97.17
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	97.12
1oe8_A	211	Glutathione S-transferase; schistosomiasis, detoxi	97.1
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	97.09
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	97.09
4ecj_A	244	Glutathione S-transferase; transferase-like protei	97.08
2x64_A	207	Glutathione-S-transferase; detoxification enzyme;	97.07
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	97.07
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	97.05
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	97.04
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	97.03
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	96.98
1gsu_A	219	GST, CGSTM1-1, class-MU glutathione S-transferase;	96.98
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	96.98
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	96.98
3iso_A	218	Putative glutathione transferase; GST; HET: GSH; 1	96.96
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	96.96
2fhe_A	216	GST, glutathione S-transferase; transferase-substr	96.95
4id0_A	214	Glutathione S-transferase-like protein YIBF; GST,	96.95
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	96.9
3c8e_A	288	YGHU, glutathione S-transferase homologue; glutath	96.89
2c4j_A	218	Glutathione S-transferase MU 2; glutathione transf	96.89
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	96.87
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	96.87
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	96.83
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	96.8
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	96.77
4hz4_A	217	Glutathione-S-transferase; enzyme function initiat	96.77
3lsz_A	225	Glutathione S-transferase; xenobiotic, biodegradat	96.76
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	96.74
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	96.72
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	96.72
2lrt_A	152	Uncharacterized protein; structural genomics, thio	96.71
1dug_A	234	Chimera of glutathione S-transferase-synthetic lin	96.67
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	96.64
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	96.62
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	96.62
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	96.59
1z6m_A	175	Conserved hypothetical protein; structural genomic	96.55
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	96.52
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	96.52
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	96.51
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	96.51
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	96.49
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	96.45
3raz_A	151	Thioredoxin-related protein; structural genomics,	96.44
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	96.41
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	95.41
4gf0_A	215	Glutathione S-transferase; GST, enzyme function in	96.37
2pvq_A	201	Glutathione S-transferase; xenobiotics detoxificat	96.29
3uar_A	227	Glutathione S-transferase; GSH binding site; HET:	96.28
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	96.23
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	96.19
1n2a_A	201	Glutathione S-transferase; HET: GTS; 1.90A {Escher	96.15
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	96.13
3h1n_A	252	Probable glutathione S-transferase; APC84167, bord	96.12
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	96.11
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	96.11
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	96.07
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	96.06
1pmt_A	203	PMGST, GST B1-1, glutathione transferase; glutathi	95.96
1f2e_A	201	Glutathione S-transferase; GST complexed with glut	95.95
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	95.94
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	95.89
2dsa_A	203	Glutathione S-transferase; HET: GSH HPX; 2.10A {Bu	95.8
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	95.61
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	95.46
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	95.38
1b8x_A	280	Protein (AML-1B); nuclear matrix targeting signal	95.38
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	95.28
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	95.23
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	95.2
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	95.08
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	94.97
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	94.97
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	94.95
3ppu_A	352	Glutathione-S-transferase; GST fold; HET: GSH; 2.3	94.95
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	94.94
1bg5_A	254	MAB, fusion protein of alpha-Na,K-ATPase with glut	94.86
3ktb_A	106	Arsenical resistance operon trans-acting represso;	94.76
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	94.75
3m1g_A	362	Putative glutathione S-transferase; ECM4-like subf	94.57
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	94.52
3kgk_A	110	Arsenical resistance operon trans-acting represso;	94.47
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	94.4
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	94.4
1xg8_A	111	Hypothetical protein SA0798; structural genomics,	94.37
2fno_A	248	AGR_PAT_752P; thioredoxin fold, GST C-terminal dom	94.16
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	94.1
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	93.98
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	93.84
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	93.84
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	92.9
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	93.81
4evm_A	138	Thioredoxin family protein; structural genomics, n	93.74
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	93.47
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	93.41
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	93.37
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	93.31
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	93.17
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	93.13
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	93.04
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	93.01
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	92.78
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	92.7
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	92.41
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	92.4
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	92.37
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	91.76
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	91.3
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	91.16
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	91.08
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	91.0
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	90.93
4gci_A	211	Glutathione S-transferase; GST, enzyme function in	90.68
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	90.67
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	90.26
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	89.41
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	89.33
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	89.29
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	89.1
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	89.06
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	89.02
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	88.86
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	88.37
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	87.93
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	87.79
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	87.77
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	87.26
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	86.69
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	86.6
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	86.34
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	86.26
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	86.17
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	85.76
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	85.18
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	85.1
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	85.02
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	84.36
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	84.29
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	84.08
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	84.08
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	83.78
4f82_A	176	Thioredoxin reductase; structural genomics, niaid,	83.23
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	83.16
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	82.71
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	82.59
2g2q_A	124	Glutaredoxin-2; thioredoxin-fold, oxidoreductase,	82.13
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	81.98
3tdg_A	273	DSBG, putative uncharacterized protein; thioredoxi	81.47
2imf_A	203	HCCA isomerase, 2-hydroxychromene-2-carboxylate is	81.29
3fz5_A	202	Possible 2-hydroxychromene-2-carboxylate isomeras;	81.13

>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}

Probab=100.00  E-value=1.3e-33  Score=212.99  Aligned_cols=103  Identities=49%  Similarity=0.888  Sum_probs=99.1

Q ss_pred             HHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCC-CeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEE
Q 030327           76 ELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNA-PFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFF  154 (179)
Q Consensus        76 ~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv-~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~I  154 (179)
                      ..++++++++++++||||+|+||++|+||||.+++++|+++|+ +|+++||++|++++++|++++||+|||||||||+||
T Consensus         8 ~~~e~i~~~i~~~~VvvF~Kgt~~~P~C~fc~~ak~lL~~~gv~~~~~~~v~~~~~~r~~l~~~sg~~TvPqIFI~g~~I   87 (118)
T 2wul_A            8 GSAEQLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPTIPQVYLNGEFV   87 (118)
T ss_dssp             -CHHHHHHHHHHSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCSCEEEETTSCHHHHHHHHHHHTCCSSCEEEETTEEE
T ss_pred             chHHHHHHHHhcCCEEEEEcCCCCCCCCHHHHHHHHHHHHhCCcCeEeecccCCHHHHHHHHHhccCCCCCeEeECCEEE
Confidence            4477899999999999999999999999999999999999999 699999999999999999999999999999999999


Q ss_pred             eecHHHHHHHHcccHHHHHHhhhc
Q 030327          155 GGCDITVEAYKNGELQELLEKALC  178 (179)
Q Consensus       155 GG~del~~l~~~GeL~~~L~~a~~  178 (179)
                      ||+|++.+|+++|+|+++|+++|.
T Consensus        88 GG~Ddl~~l~~~GeL~~lL~~~Gi  111 (118)
T 2wul_A           88 GGCDILLQMHQNGDLVEELKKLGI  111 (118)
T ss_dssp             ECHHHHHHHHHHTHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHCCCHHHHHHHcCC
Confidence            999999999999999999999985

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A

Probab=99.98  E-value=4.6e-32  Score=199.94  Aligned_cols=108  Identities=80%  Similarity=1.327  Sum_probs=104.7

Q ss_pred             cCCHHHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCC
Q 030327           72 ALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEG  151 (179)
Q Consensus        72 ~~~~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG  151 (179)
                      .+++++++++++++++++|+||+++||+.|+||||++++++|+++|++|+++||+++++.+++|++++|++++|+|||||
T Consensus         2 ~~s~~~~~~v~~~i~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~ifi~g   81 (109)
T 3ipz_A            2 ALTPQLKDTLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPTFPQLYIGG   81 (109)
T ss_dssp             CCCHHHHHHHHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCSSSCEEEETT
T ss_pred             CCCHHHHHHHHHHHccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCCCCCeEEECC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeecHHHHHHHHcccHHHHHHhhhcC
Q 030327          152 EFFGGCDITVEAYKNGELQELLEKALCT  179 (179)
Q Consensus       152 ~~IGG~del~~l~~~GeL~~~L~~a~~~  179 (179)
                      ++|||+|++.+++++|+|+++|++|||+
T Consensus        82 ~~iGG~d~l~~l~~~G~L~~~L~~a~~~  109 (109)
T 3ipz_A           82 EFFGGCDITLEAFKTGELQEEVEKAMCS  109 (109)
T ss_dssp             EEEECHHHHHHHHHHSHHHHHHHHHHHC
T ss_pred             EEEeCHHHHHHHHHcCcHHHHHHHhhcC
Confidence            9999999999999999999999999985

>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.7e-31  Score=199.95  Aligned_cols=105  Identities=44%  Similarity=0.915  Sum_probs=102.1

Q ss_pred             CHHHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCC---eEEEEcCCCHHHHHHHHHhcCCCCcceEeeC
Q 030327           74 TPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAP---FETVNILENEMLRQGLKEYSSWPTFPQLYIE  150 (179)
Q Consensus        74 ~~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~---y~~vdV~~d~~~~~~L~~~sg~~tvP~VfId  150 (179)
                      .+++.+++++++++++|+||+++|+++|+||||.+++++|+++|++   |+++||+++++++++|++++|++++|+||||
T Consensus         2 ~~~~~~~v~~~i~~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~sg~~tvP~vfI~   81 (121)
T 3gx8_A            2 STEIRKAIEDAIESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFSEWPTIPQLYVN   81 (121)
T ss_dssp             CHHHHHHHHHHHHSCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHHTCCSSCEEEET
T ss_pred             CHHHHHHHHHHhccCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHhCCCCCCeEEEC
Confidence            5678999999999999999999999999999999999999999999   9999999999999999999999999999999


Q ss_pred             CEEEeecHHHHHHHHcccHHHHHHhhhc
Q 030327          151 GEFFGGCDITVEAYKNGELQELLEKALC  178 (179)
Q Consensus       151 G~~IGG~del~~l~~~GeL~~~L~~a~~  178 (179)
                      |++|||+|++.+++++|+|+++|+++|+
T Consensus        82 g~~iGG~d~l~~l~~~G~L~~~L~~~g~  109 (121)
T 3gx8_A           82 KEFIGGCDVITSMARSGELADLLEEAQA  109 (121)
T ss_dssp             TEEEESHHHHHHHHHHTHHHHHHHHTTC
T ss_pred             CEEEecHHHHHHHHHcCChHHHHHHcCC
Confidence            9999999999999999999999999986

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}

Probab=99.97  E-value=7.4e-31  Score=194.71  Aligned_cols=105  Identities=45%  Similarity=0.777  Sum_probs=99.8

Q ss_pred             CHHHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEE
Q 030327           74 TPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEF  153 (179)
Q Consensus        74 ~~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~  153 (179)
                      .+++++++++++++++|+||+|+|++.++||||.+++++|+++|++|+++||+.|++.+++|++++|++++|+|||||++
T Consensus         2 ~~~~~~~v~~~i~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g~~tvP~ifi~g~~   81 (111)
T 3zyw_A            2 KEDLNLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSWPTYPQLYVSGEL   81 (111)
T ss_dssp             --CHHHHHHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEEETTEE
T ss_pred             CHHHHHHHHHHHhcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHCCCCCCEEEECCEE
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecHHHHHHHHcccHHHHHHhhhc
Q 030327          154 FGGCDITVEAYKNGELQELLEKALC  178 (179)
Q Consensus       154 IGG~del~~l~~~GeL~~~L~~a~~  178 (179)
                      |||+|++.+++++|+|+++|++|+.
T Consensus        82 iGG~d~l~~l~~~G~L~~~L~~a~~  106 (111)
T 3zyw_A           82 IGGLDIIKELEASEELDTICPKAAE  106 (111)
T ss_dssp             EECHHHHHHHHHTTCHHHHSCCCCC
T ss_pred             EecHHHHHHHHHCCCHHHHHHhCcc
Confidence            9999999999999999999988763

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A

Probab=99.95  E-value=2.1e-28  Score=187.97  Aligned_cols=106  Identities=40%  Similarity=0.835  Sum_probs=101.2

Q ss_pred             CCHHHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCE
Q 030327           73 LTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGE  152 (179)
Q Consensus        73 ~~~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~  152 (179)
                      ...++.++++++++.++|+||+++++..++||||.+++++|+++|++|+++||+.+++.+++|++++|++++|+|||||+
T Consensus        20 ~~~~~~~~v~~~i~~~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G~~tvP~VfI~G~   99 (135)
T 2wci_A           20 HMSTTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGE   99 (135)
T ss_dssp             -CCHHHHHHHHHHHHCSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHTCCSSCEEEETTE
T ss_pred             chHHHHHHHHHHhccCCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHCCCCcCEEEECCE
Confidence            34578999999999999999999998889999999999999999999999999999999999999999999999999999


Q ss_pred             EEeecHHHHHHHHcccHHHHHHhhhc
Q 030327          153 FFGGCDITVEAYKNGELQELLEKALC  178 (179)
Q Consensus       153 ~IGG~del~~l~~~GeL~~~L~~a~~  178 (179)
                      +|||+|++.+|+++|+|+++|+.+|+
T Consensus       100 ~iGG~d~l~~l~~~G~L~~~L~~~g~  125 (135)
T 2wci_A          100 LVGGCDIVIEMYQRGELQQLIKETAA  125 (135)
T ss_dssp             EEESHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             EEEChHHHHHHHHCChHHHHHHHcCC
Confidence            99999999999999999999999986

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=99.95  E-value=4.1e-27  Score=171.15  Aligned_cols=103  Identities=48%  Similarity=0.877  Sum_probs=98.4

Q ss_pred             CCHHHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCE
Q 030327           73 LTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGE  152 (179)
Q Consensus        73 ~~~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~  152 (179)
                      +.+++.+.++++++.++|+||+++++.++|||+|++++++|++++++|.++||+.+++.++++.+++|+.++|+||+||+
T Consensus         2 ~~~~~~~~~~~~i~~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v~i~g~   81 (105)
T 2yan_A            2 MAPKLEERLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQLYVKGE   81 (105)
T ss_dssp             CCHHHHHHHHHHHTSSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEEETTE
T ss_pred             ccHHHHHHHHHHhccCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCCCCCCeEEECCE
Confidence            46788999999999999999999888888999999999999999999999999999999999999999999999999999


Q ss_pred             EEeecHHHHHHHHcccHHHHHHh
Q 030327          153 FFGGCDITVEAYKNGELQELLEK  175 (179)
Q Consensus       153 ~IGG~del~~l~~~GeL~~~L~~  175 (179)
                      +|||+|++.+++++|+|+++|+.
T Consensus        82 ~igg~d~~~~l~~~g~L~~~l~~  104 (105)
T 2yan_A           82 LVGGLDIVKELKENGELLPILRG  104 (105)
T ss_dssp             EEECHHHHHHHHHTTCHHHHHTT
T ss_pred             EEeChHHHHHHHHCCCHHHHhcc
Confidence            99999999999999999999964

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=99.94  E-value=4.4e-27  Score=172.46  Aligned_cols=101  Identities=46%  Similarity=0.805  Sum_probs=95.3

Q ss_pred             HHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEee
Q 030327           77 LKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGG  156 (179)
Q Consensus        77 ~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG  156 (179)
                      +++.++++++.++|+||+++++..+|||+|++++++|+++|++|+++||+.+++.+++|++++|+.++|+|||||++|||
T Consensus         4 ~~~~~~~~i~~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~ifi~g~~igG   83 (109)
T 1wik_A            4 GSSGLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNWPTYPQLYVRGDLVGG   83 (109)
T ss_dssp             SCCCHHHHHTTSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHSCCSSCEEECSSSEEEC
T ss_pred             HHHHHHHHhccCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHhCCCCCCEEEECCEEEcC
Confidence            44558889999999999998888889999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHcccHHHHHHhhh
Q 030327          157 CDITVEAYKNGELQELLEKAL  177 (179)
Q Consensus       157 ~del~~l~~~GeL~~~L~~a~  177 (179)
                      +|++.+++++|+|+++|+++.
T Consensus        84 ~d~l~~l~~~g~L~~~L~~a~  104 (109)
T 1wik_A           84 LDIVKELKDNGELLPILKGES  104 (109)
T ss_dssp             HHHHHHHHHHTCSHHHHHTCC
T ss_pred             HHHHHHHHHCCCHHHHHhccc
Confidence            999999999999999998775

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}

Probab=99.94  E-value=2.5e-26  Score=174.60  Aligned_cols=96  Identities=19%  Similarity=0.302  Sum_probs=88.9

Q ss_pred             HHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc---CCCeEEEEcCCC---HHHHHHHHHhcCCCCcceEeeCC
Q 030327           78 KSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL---NAPFETVNILEN---EMLRQGLKEYSSWPTFPQLYIEG  151 (179)
Q Consensus        78 ~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~---gv~y~~vdV~~d---~~~~~~L~~~sg~~tvP~VfIdG  151 (179)
                      .+.+++++++++|+||++     +|||||.+++++|++.   +++|+++||+.+   ++++++|++.+|++++|+|||||
T Consensus         4 ~~~~~~ii~~~~Vvvysk-----~~Cp~C~~ak~lL~~~~~~~v~~~~idid~~~d~~~~~~~l~~~~G~~tVP~IfI~G   78 (127)
T 3l4n_A            4 QKEYSLILDLSPIIIFSK-----STCSYSKGMKELLENEYQFIPNYYIIELDKHGHGEELQEYIKLVTGRGTVPNLLVNG   78 (127)
T ss_dssp             HHHHHHHHTSCSEEEEEC-----TTCHHHHHHHHHHHHHEEEESCCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEEETT
T ss_pred             HHHHHHHHccCCEEEEEc-----CCCccHHHHHHHHHHhcccCCCcEEEEecCCCCHHHHHHHHHHHcCCCCcceEEECC
Confidence            456889999999999999     5999999999999985   799999999865   57888899999999999999999


Q ss_pred             EEEeecHHHHHHHHcccHHHHHHhhhc
Q 030327          152 EFFGGCDITVEAYKNGELQELLEKALC  178 (179)
Q Consensus       152 ~~IGG~del~~l~~~GeL~~~L~~a~~  178 (179)
                      ++|||+|++.+++++|+|+++|+++|+
T Consensus        79 ~~IGG~ddl~~l~~~G~L~~lL~~~g~  105 (127)
T 3l4n_A           79 VSRGGNEEIKKLHTQGKLLESLQVWSD  105 (127)
T ss_dssp             EECCCHHHHHHHHHTTCHHHHHHHTCT
T ss_pred             EEEcCHHHHHHHHHCCCHHHHHHHhcC
Confidence            999999999999999999999999886

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=99.93  E-value=1e-25  Score=166.59  Aligned_cols=98  Identities=29%  Similarity=0.534  Sum_probs=91.0

Q ss_pred             CCHHHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCC--C-HHHHHHHHHhcCCCCcceEee
Q 030327           73 LTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE--N-EMLRQGLKEYSSWPTFPQLYI  149 (179)
Q Consensus        73 ~~~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~--d-~~~~~~L~~~sg~~tvP~VfI  149 (179)
                      ..++..+++++++++++|+||++     +|||||++++++|+++|++|+++||+.  + ++++++|.+.+|++++|+|||
T Consensus         2 ~~~~~~~~~~~~i~~~~v~vy~~-----~~Cp~C~~ak~~L~~~~i~~~~~dvd~~~~~~~~~~~l~~~~g~~tvP~vfi   76 (114)
T 3h8q_A            2 AREELRRHLVGLIERSRVVIFSK-----SYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTVPNIFV   76 (114)
T ss_dssp             CCHHHHHHHHHHHHHCSEEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEETTTSTTHHHHHHHHHHHHSCCSSCEEEE
T ss_pred             chHHHHHHHHHHhccCCEEEEEc-----CCCCcHHHHHHHHHHcCCCcEEEEecCCCChHHHHHHHHHHhCCCccCEEEE
Confidence            45778899999999999999999     599999999999999999999999985  3 567788989999999999999


Q ss_pred             CCEEEeecHHHHHHHHcccHHHHHHh
Q 030327          150 EGEFFGGCDITVEAYKNGELQELLEK  175 (179)
Q Consensus       150 dG~~IGG~del~~l~~~GeL~~~L~~  175 (179)
                      ||++|||+|++.+++++|+|+++|+.
T Consensus        77 ~g~~igG~d~l~~l~~~G~L~~~l~~  102 (114)
T 3h8q_A           77 NKVHVGGCDQTFQAYQSGLLQKLLQE  102 (114)
T ss_dssp             TTEEEESHHHHHHHHHHTHHHHHHHS
T ss_pred             CCEEEeCHHHHHHHHHCCCHHHHhcC
Confidence            99999999999999999999999984

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=99.93  E-value=7.8e-26  Score=165.68  Aligned_cols=100  Identities=26%  Similarity=0.475  Sum_probs=90.8

Q ss_pred             CHHHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCC----CHHHHHHHHHhcCCCCcceEee
Q 030327           74 TPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE----NEMLRQGLKEYSSWPTFPQLYI  149 (179)
Q Consensus        74 ~~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~----d~~~~~~L~~~sg~~tvP~VfI  149 (179)
                      ..+.++.++++++.++|++|++     +|||+|++++.+|++++++|+++||+.    +++++++|.+.+|+.++|+|||
T Consensus         5 ~~~~~~~~~~~i~~~~v~vy~~-----~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~~~~~l~~~~g~~tvP~ifi   79 (113)
T 3rhb_A            5 GSRMEESIRKTVTENTVVIYSK-----TWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNVFV   79 (113)
T ss_dssp             -CHHHHHHHHHHHHSSEEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEEGGGSTTHHHHHHHHHHHHHSCCSSCEEEE
T ss_pred             HHHHHHHHHHHHhcCCEEEEEC-----CCChhHHHHHHHHHHcCCCCeEEEeecCCCChHHHHHHHHHHhCCCCcCEEEE
Confidence            3578889999999999999999     599999999999999999999999986    3778888999999999999999


Q ss_pred             CCEEEeecHHHHHHHHcccHHHHHHhhhc
Q 030327          150 EGEFFGGCDITVEAYKNGELQELLEKALC  178 (179)
Q Consensus       150 dG~~IGG~del~~l~~~GeL~~~L~~a~~  178 (179)
                      ||++|||+|++.+++++|+|+++|+++|+
T Consensus        80 ~g~~igG~~~~~~~~~~g~L~~~l~~~~~  108 (113)
T 3rhb_A           80 CGKHIGGCTDTVKLNRKGDLELMLAEANG  108 (113)
T ss_dssp             TTEEEESHHHHHHHHHHTHHHHHHTC---
T ss_pred             CCEEEcCcHHHHHHHHcCCHHHHHHHHhh
Confidence            99999999999999999999999999886

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=99.92  E-value=1.6e-24  Score=161.40  Aligned_cols=103  Identities=24%  Similarity=0.437  Sum_probs=96.3

Q ss_pred             cCCHHHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHH-HHHHHhcC---CCeEEEEcCCC---HHHHHHHHHhcCCCCc
Q 030327           72 ALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTV-VQILKSLN---APFETVNILEN---EMLRQGLKEYSSWPTF  144 (179)
Q Consensus        72 ~~~~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~a-k~lL~~~g---v~y~~vdV~~d---~~~~~~L~~~sg~~tv  144 (179)
                      +..++..+.++++++.++|++|++     +|||+|+++ +++|++++   ++|+++||+.+   ++.+++|.+.+|+.++
T Consensus         9 ~~~~~~~~~~~~~i~~~~Vvvf~~-----~~Cp~C~~alk~~L~~~~~~~i~~~~vdid~~~~~~~~~~~l~~~~g~~tv   83 (118)
T 3c1r_A            9 MVSQETIKHVKDLIAENEIFVASK-----TYCPYCHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEINGQRTV   83 (118)
T ss_dssp             CSCHHHHHHHHHHHHHSSEEEEEC-----SSCHHHHHHHHHHHTTSCCCGGGEEEEEGGGSTTHHHHHHHHHHHHSCCSS
T ss_pred             ccCHHHHHHHHHHHccCcEEEEEc-----CCCcCHHHHHHHHHHHcCCCCCCeEEEECccCCChHHHHHHHHHHhCCCCc
Confidence            677889999999999999999999     599999999 99999999   99999999876   4688899999999999


Q ss_pred             ceEeeCCEEEeecHHHHHHHHcccHHHHHHhhhcC
Q 030327          145 PQLYIEGEFFGGCDITVEAYKNGELQELLEKALCT  179 (179)
Q Consensus       145 P~VfIdG~~IGG~del~~l~~~GeL~~~L~~a~~~  179 (179)
                      |+||+||++|||+|++.+++++|+|+++|+.+||.
T Consensus        84 P~vfi~g~~igG~d~l~~l~~~g~L~~~L~~~g~~  118 (118)
T 3c1r_A           84 PNIYINGKHIGGNDDLQELRETGELEELLEPILAN  118 (118)
T ss_dssp             CEEEETTEEEESHHHHHHHHHHTHHHHHHHHHHC-
T ss_pred             CEEEECCEEEEcHHHHHHHHHCCcHHHHHHHcCCC
Confidence            99999999999999999999999999999999973

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*

Probab=99.91  E-value=2.9e-24  Score=162.82  Aligned_cols=101  Identities=23%  Similarity=0.394  Sum_probs=93.0

Q ss_pred             ccCCHHHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHH-HHHHHhcC---CCeEEEEcCCC---HHHHHHHHHhcCCCC
Q 030327           71 AALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTV-VQILKSLN---APFETVNILEN---EMLRQGLKEYSSWPT  143 (179)
Q Consensus        71 ~~~~~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~a-k~lL~~~g---v~y~~vdV~~d---~~~~~~L~~~sg~~t  143 (179)
                      .++.++.++.+++++++++|++|++     +|||||+++ +++|++++   ++|+++||+.+   ++.+++|.+.+|+++
T Consensus        20 ~~~~~~~~~~v~~~i~~~~Vvvy~~-----~~Cp~C~~a~k~~L~~~~~~~i~~~~vdvd~~~~~~~~~~~L~~~~g~~t   94 (129)
T 3ctg_A           20 HMVSQETVAHVKDLIGQKEVFVAAK-----TYCPYCKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEISGQKT   94 (129)
T ss_dssp             --CCHHHHHHHHHHHHHSSEEEEEC-----TTCHHHHHHHHHHHTTSCCCGGGEEEEEGGGSTTHHHHHHHHHHHHSCCS
T ss_pred             ccccHHHHHHHHHHHcCCCEEEEEC-----CCCCchHHHHHHHHHhcCccCCCcEEEEccccCCHHHHHHHHHHHhCCCC
Confidence            3566788999999999999999999     599999999 99999999   99999999876   467889999999999


Q ss_pred             cceEeeCCEEEeecHHHHHHHHcccHHHHHHhh
Q 030327          144 FPQLYIEGEFFGGCDITVEAYKNGELQELLEKA  176 (179)
Q Consensus       144 vP~VfIdG~~IGG~del~~l~~~GeL~~~L~~a  176 (179)
                      +|+|||||++|||+|++.+++++|+|+++|+.|
T Consensus        95 VP~vfi~g~~igG~d~l~~l~~~G~L~~~L~~a  127 (129)
T 3ctg_A           95 VPNVYINGKHIGGNSDLETLKKNGKLAEILKPV  127 (129)
T ss_dssp             SCEEEETTEEEESHHHHHHHHHTTHHHHHTTTT
T ss_pred             CCEEEECCEEEcCHHHHHHHHHCCCHHHHHHHH
Confidence            999999999999999999999999999999876

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=99.91  E-value=6.4e-24  Score=154.01  Aligned_cols=83  Identities=23%  Similarity=0.456  Sum_probs=80.2

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhc-CCCCcceEeeCCEEEeecHHHHHHHH
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYS-SWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~s-g~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      .++|+||++     +|||+|++++++|+++|++|+++||+.+++.+++|++++ |+.++|+|||||++|||+|++.++++
T Consensus        15 ~~~v~vy~~-----~~Cp~C~~ak~~L~~~~i~y~~idI~~~~~~~~~l~~~~~g~~~vP~ifi~g~~igG~d~l~~~~~   89 (99)
T 3qmx_A           15 SAKIEIYTW-----STCPFCMRALALLKRKGVEFQEYCIDGDNEAREAMAARANGKRSLPQIFIDDQHIGGCDDIYALDG   89 (99)
T ss_dssp             CCCEEEEEC-----TTCHHHHHHHHHHHHHTCCCEEEECTTCHHHHHHHHHHTTTCCCSCEEEETTEEEESHHHHHHHHH
T ss_pred             CCCEEEEEc-----CCChhHHHHHHHHHHCCCCCEEEEcCCCHHHHHHHHHHhCCCCCCCEEEECCEEEeChHHHHHHHH
Confidence            678999999     599999999999999999999999999999999999998 99999999999999999999999999


Q ss_pred             cccHHHHHH
Q 030327          166 NGELQELLE  174 (179)
Q Consensus       166 ~GeL~~~L~  174 (179)
                      +|+|+++|+
T Consensus        90 ~g~L~~~L~   98 (99)
T 3qmx_A           90 AGKLDPLLH   98 (99)
T ss_dssp             TTCHHHHHT
T ss_pred             cCCHHHHhc
Confidence            999999986

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A

Probab=99.90  E-value=2e-23  Score=148.66  Aligned_cols=83  Identities=23%  Similarity=0.382  Sum_probs=78.5

Q ss_pred             CcEEEEEeeCCCCCCCchH------HHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcC--CCCcceEeeCCEEEeecHH
Q 030327           88 NKVVLFMKGTKDFPQCGFS------HTVVQILKSLNAPFETVNILENEMLRQGLKEYSS--WPTFPQLYIEGEFFGGCDI  159 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C------~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg--~~tvP~VfIdG~~IGG~de  159 (179)
                      .+|+||+++     +||+|      .+|+++|+++|++|+++||+.+++.+++|++.+|  ..++|+|||||++|||+|+
T Consensus         2 ~~v~ly~~~-----~C~~c~~~~~~~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~g~~~~~vP~ifi~g~~igG~d~   76 (93)
T 1t1v_A            2 SGLRVYSTS-----VTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQIVNGNHYCGDYEL   76 (93)
T ss_dssp             CCEEEEECS-----SCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEEETTEEEEEHHH
T ss_pred             CCEEEEEcC-----CCCCchhhHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCCCCCEEEECCEEEeCHHH
Confidence            579999994     99999      9999999999999999999999999999999999  5699999999999999999


Q ss_pred             HHHHHHcccHHHHHHh
Q 030327          160 TVEAYKNGELQELLEK  175 (179)
Q Consensus       160 l~~l~~~GeL~~~L~~  175 (179)
                      +.+++++|+|+++|+.
T Consensus        77 l~~l~~~g~L~~~l~~   92 (93)
T 1t1v_A           77 FVEAVEQDTLQEFLKL   92 (93)
T ss_dssp             HHHHHHTTCHHHHTTC
T ss_pred             HHHHHhcCCHHHHhCC
Confidence            9999999999999863

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=99.89  E-value=9.4e-23  Score=146.31  Aligned_cols=96  Identities=27%  Similarity=0.472  Sum_probs=90.0

Q ss_pred             HHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCC---eEEEEcCCC---HHHHHHHHHhcCCCCcceEeeCC
Q 030327           78 KSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAP---FETVNILEN---EMLRQGLKEYSSWPTFPQLYIEG  151 (179)
Q Consensus        78 ~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~---y~~vdV~~d---~~~~~~L~~~sg~~tvP~VfIdG  151 (179)
                      .+.+++++++++|++|++     +|||+|++++.+|++++++   |+.+||+.+   ++.+++|.+.+|..++|+||+||
T Consensus         2 ~~~~~~~i~~~~v~~f~~-----~~C~~C~~~~~~L~~~~~~~~~~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~i~~~g   76 (105)
T 1kte_A            2 QAFVNSKIQPGKVVVFIK-----PTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRVFIGK   76 (105)
T ss_dssp             HHHHHHHCCTTCEEEEEC-----SSCHHHHHHHHHHHHSCBCTTSEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEEETT
T ss_pred             chHHHhhcccCCEEEEEc-----CCCHhHHHHHHHHHHcCCCCCccEEEEccCCCCHHHHHHHHHHHhCCCCcCeEEECC
Confidence            456889999999999999     5999999999999999999   999999887   67888899889999999999999


Q ss_pred             EEEeecHHHHHHHHcccHHHHHHhhhc
Q 030327          152 EFFGGCDITVEAYKNGELQELLEKALC  178 (179)
Q Consensus       152 ~~IGG~del~~l~~~GeL~~~L~~a~~  178 (179)
                      ++|||++++.+++++|+|+++|+++|+
T Consensus        77 ~~i~g~~~~~~~~~~g~L~~~l~~~g~  103 (105)
T 1kte_A           77 ECIGGCTDLESMHKRGELLTRLQQVGA  103 (105)
T ss_dssp             EEEESHHHHHHHHHHTHHHHHHHHHTC
T ss_pred             EEEeccHHHHHHHHCCcHHHHHHHcCC
Confidence            999999999999999999999999986

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.89  E-value=5.8e-23  Score=151.66  Aligned_cols=84  Identities=24%  Similarity=0.343  Sum_probs=79.6

Q ss_pred             CcEEEEEeeCCCCCCCchHH------HHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhc--------CCCCcceEeeCCEE
Q 030327           88 NKVVLFMKGTKDFPQCGFSH------TVVQILKSLNAPFETVNILENEMLRQGLKEYS--------SWPTFPQLYIEGEF  153 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~------~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~s--------g~~tvP~VfIdG~~  153 (179)
                      .+|+||++.     +||+|+      +++++|++++++|+++||+.+++.+++|++++        |++++|+|||||++
T Consensus         8 m~V~vy~~~-----~C~~C~~~~~~~~ak~~L~~~gi~y~~vdI~~~~~~~~~l~~~~~~~~~~~~g~~tvP~vfi~g~~   82 (111)
T 2ct6_A            8 MVIRVFIAS-----SSGFVAIKKKQQDVVRFLEANKIEFEEVDITMSEEQRQWMYKNVPPEKKPTQGNPLPPQIFNGDRY   82 (111)
T ss_dssp             CCEEEEECS-----SCSCHHHHHHHHHHHHHHHHTTCCEEEEETTTCHHHHHHHHHSCCTTTCCSSSSCCSCEEEETTEE
T ss_pred             cEEEEEEcC-----CCCCcccchhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhcccccccCCCCCCCEEEECCEE
Confidence            579999994     999999      89999999999999999999999999999985        99999999999999


Q ss_pred             EeecHHHHHHHHcccHHHHHHhh
Q 030327          154 FGGCDITVEAYKNGELQELLEKA  176 (179)
Q Consensus       154 IGG~del~~l~~~GeL~~~L~~a  176 (179)
                      |||+|++.+++++|+|+++|+.+
T Consensus        83 iGG~d~l~~l~~~g~L~~~L~~~  105 (111)
T 2ct6_A           83 CGDYDSFFESKESNTVFSFLGLK  105 (111)
T ss_dssp             EEEHHHHHHHHTTTCHHHHHTCC
T ss_pred             EeCHHHHHHHHHcCCHHHHHcCC
Confidence            99999999999999999999764

>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron transport, redox- active center, yeast, GRX1P, transport; HET: PIA; 2.7A {Aequorea victoria}

Probab=99.88  E-value=6.5e-23  Score=179.85  Aligned_cols=103  Identities=28%  Similarity=0.490  Sum_probs=93.7

Q ss_pred             ccCCHHHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHH-HHHhcCCCeEEEEc------CCCHHHHHHHHHhcCCCC
Q 030327           71 AALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQ-ILKSLNAPFETVNI------LENEMLRQGLKEYSSWPT  143 (179)
Q Consensus        71 ~~~~~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~-lL~~~gv~y~~vdV------~~d~~~~~~L~~~sg~~t  143 (179)
                      .++.+++.+++++++++++|+||++     ++||||.+|++ +|+++|++|+++||      +++++++++|++++|+++
T Consensus       244 ~~~s~~~~~~V~~lI~~~~VvVYsk-----~~CPyC~~Ak~~LL~~~gV~y~eidVlEld~~~~~~e~~~~L~~~tG~~T  318 (362)
T 2jad_A          244 GMVSQETIKHVKDLIAENEIFVASK-----TYCPYSHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEINGQRT  318 (362)
T ss_dssp             -CCCHHHHHHHHHHHHTCSEEEEEC-----TTCHHHHHHHHHHHTTTCCCTTTEEEEEGGGSTTHHHHHHHHHHHHCCCS
T ss_pred             cccCHHHHHHHHHHhccCCEEEEEc-----CCCcchHHHHHHHHHHcCCCcceEEEEEeccccCCHHHHHHHHHHHCCCC
Confidence            4677889999999999999999999     59999999997 89999999876665      346889999999999999


Q ss_pred             cceEeeCCEEEeecHHHHHHHHcccHHHHHHhhhc
Q 030327          144 FPQLYIEGEFFGGCDITVEAYKNGELQELLEKALC  178 (179)
Q Consensus       144 vP~VfIdG~~IGG~del~~l~~~GeL~~~L~~a~~  178 (179)
                      +|||||||++|||+|++.+|+++|+|+++|+.+++
T Consensus       319 VPqVFI~Gk~IGG~DdL~~L~~~GeL~~lL~~~~~  353 (362)
T 2jad_A          319 VPNIYINGKHIGGNDDLQELRETGELEELLEPILA  353 (362)
T ss_dssp             SCEEEETTEEEESHHHHHHHHHSSHHHHHHHHHC-
T ss_pred             cCEEEECCEEEEChHHHHHhhhCChHHHHHHhCch
Confidence            99999999999999999999999999999999876

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.88  E-value=3.1e-22  Score=151.08  Aligned_cols=104  Identities=20%  Similarity=0.426  Sum_probs=96.0

Q ss_pred             ccCCHHHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC---HHHHHHHHHhcCCCCcceE
Q 030327           71 AALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN---EMLRQGLKEYSSWPTFPQL  147 (179)
Q Consensus        71 ~~~~~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d---~~~~~~L~~~sg~~tvP~V  147 (179)
                      ....++..+.++++++.++|++|++     +|||+|++++.+|++++++|+.+||+.+   ++.+++|.+.+|..++|+|
T Consensus        10 ~~~~~~~~~~~~~~i~~~~vvvf~~-----~~Cp~C~~~~~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~~g~~~vP~l   84 (130)
T 2cq9_A           10 ENLATAPVNQIQETISDNCVVIFSK-----TSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVPRI   84 (130)
T ss_dssp             CCCSCCHHHHHHHHHHHSSEEEEEC-----SSCSHHHHHHHHHHHHTCCCEEEETTTSTTHHHHHHHHHHHHSSCCSSEE
T ss_pred             CcccHHHHHHHHHHHcCCcEEEEEc-----CCChHHHHHHHHHHHcCCCcEEEECcCCcCcHHHHHHHHHHhCCCCcCEE
Confidence            4556778888999999999999999     5999999999999999999999999877   7888889988999999999


Q ss_pred             eeCCEEEeecHHHHHHHHcccHHHHHHhhhcC
Q 030327          148 YIEGEFFGGCDITVEAYKNGELQELLEKALCT  179 (179)
Q Consensus       148 fIdG~~IGG~del~~l~~~GeL~~~L~~a~~~  179 (179)
                      |+||++|||++++.+++++|+|+++|+++|+.
T Consensus        85 ~i~G~~igg~~~l~~~~~~~~L~~~L~~~g~~  116 (130)
T 2cq9_A           85 FVNGTFIGGATDTHRLHKEGKLLPLVHQCYLK  116 (130)
T ss_dssp             EETTEEEEEHHHHHHHHHHTSSHHHHHHHSSS
T ss_pred             EECCEEEcChHHHHHHHHcCcHHHHHHHcCcH
Confidence            99999999999999999999999999999863

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=99.87  E-value=4e-22  Score=154.17  Aligned_cols=104  Identities=20%  Similarity=0.426  Sum_probs=94.6

Q ss_pred             ccCCHHHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC---HHHHHHHHHhcCCCCcceE
Q 030327           71 AALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN---EMLRQGLKEYSSWPTFPQL  147 (179)
Q Consensus        71 ~~~~~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d---~~~~~~L~~~sg~~tvP~V  147 (179)
                      .....+.++.++++++.++|++|++     +|||+|++++.+|++++++|+.+||+.+   ++.+++|.+.+|..++|+|
T Consensus        32 ~~~~~~~~~~~~~~i~~~~Vvvf~~-----~~Cp~C~~~k~~L~~~~i~~~~vdId~~~~~~~~~~~L~~~~g~~tvP~i  106 (146)
T 2ht9_A           32 ENLATAPVNQIQETISDNCVVIFSK-----TSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVPRI  106 (146)
T ss_dssp             --CTTCCHHHHHHHHHHCSEEEEEC-----TTCHHHHHHHHHHHHHTCCCEEEEGGGCTTHHHHHHHHHHHHSCCCSCEE
T ss_pred             ccchhHHHHHHHHHhcCCCEEEEEC-----CCChhHHHHHHHHHHcCCCeEEEECccCcCCHHHHHHHHHHhCCCCcCeE
Confidence            4556677888999999999999999     5999999999999999999999999877   7888889999999999999


Q ss_pred             eeCCEEEeecHHHHHHHHcccHHHHHHhhhcC
Q 030327          148 YIEGEFFGGCDITVEAYKNGELQELLEKALCT  179 (179)
Q Consensus       148 fIdG~~IGG~del~~l~~~GeL~~~L~~a~~~  179 (179)
                      |+||++|||++++.+++++|+|+++|+.+|.+
T Consensus       107 fi~G~~igG~d~l~~l~~~g~L~~~L~~~g~~  138 (146)
T 2ht9_A          107 FVNGTFIGGATDTHRLHKEGKLLPLVHQCYLK  138 (146)
T ss_dssp             EETTEEEESHHHHHHHHHTTCHHHHHHHTTC-
T ss_pred             EECCEEEeCchHHHHHHHcChHHHHHHHcCcc
Confidence            99999999999999999999999999999863

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=99.87  E-value=7e-22  Score=145.31  Aligned_cols=97  Identities=23%  Similarity=0.380  Sum_probs=91.1

Q ss_pred             HHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCC---eEEEEcCCCH---HHHHHHHHhcCCCCcceEeeC
Q 030327           77 LKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAP---FETVNILENE---MLRQGLKEYSSWPTFPQLYIE  150 (179)
Q Consensus        77 ~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~---y~~vdV~~d~---~~~~~L~~~sg~~tvP~VfId  150 (179)
                      .++.++++++.+.|++|++     +|||+|++++.+|++++++   |+++||+.++   +.+++|.+.+|..++|+||+|
T Consensus         8 ~~~~~~~~i~~~~vv~f~~-----~~Cp~C~~~~~~L~~~~~~~~~~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~v~i~   82 (114)
T 2hze_A            8 AEEFVQQRLANNKVTIFVK-----YTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGKTVPRIFFG   82 (114)
T ss_dssp             HHHHHHTTCCTTCEEEEEC-----TTCHHHHHHHHHHTTSCBCTTSEEEEEGGGSSSHHHHHHHHHHHHSCCSSCEEEET
T ss_pred             HHHHHHHHhccCCEEEEEe-----CCChhHHHHHHHHHHcCCCcCceEEEEccCCCChHHHHHHHHHHhCCCCcCEEEEC
Confidence            4677999999999999999     5999999999999999999   9999998875   788899988999999999999


Q ss_pred             CEEEeecHHHHHHHHcccHHHHHHhhhc
Q 030327          151 GEFFGGCDITVEAYKNGELQELLEKALC  178 (179)
Q Consensus       151 G~~IGG~del~~l~~~GeL~~~L~~a~~  178 (179)
                      |++|||++++.+++++|+|+++|+++|+
T Consensus        83 g~~igg~~~~~~~~~~~~L~~~L~~~g~  110 (114)
T 2hze_A           83 KTSIGGYSDLLEIDNMDALGDILSSIGV  110 (114)
T ss_dssp             TEEEESHHHHHHHHHTTCHHHHHHHTTC
T ss_pred             CEEEeCcHHHHHHHHCChHHHHHHHcCC
Confidence            9999999999999999999999999986

>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A

Probab=99.86  E-value=1.2e-21  Score=148.13  Aligned_cols=81  Identities=25%  Similarity=0.413  Sum_probs=77.4

Q ss_pred             EEEEEeeCCCCCCCchH------HHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhc--------CCCCcceEeeCCEEEe
Q 030327           90 VVLFMKGTKDFPQCGFS------HTVVQILKSLNAPFETVNILENEMLRQGLKEYS--------SWPTFPQLYIEGEFFG  155 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C------~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~s--------g~~tvP~VfIdG~~IG  155 (179)
                      |+||+.+     .||+|      .+|+++|+++||+|+++||+.|++.+++|.+.+        |.+++|||||||++||
T Consensus         2 V~vYtt~-----~c~~c~~kk~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~~~~~~~~~G~~tvPQIFi~~~~iG   76 (121)
T 1u6t_A            2 IRVYIAS-----SSGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVPENSRPATGYPLPPQIFNESQYRG   76 (121)
T ss_dssp             EEEEECT-----TCSCHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHSCGGGSCSSSSCCSCEEEETTEEEE
T ss_pred             EEEEecC-----CCCCccchHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhccccccccCCCcCCCEEEECCEEEe
Confidence            8999995     99998      799999999999999999999999999999998        8999999999999999


Q ss_pred             ecHHHHHHHHcccHHHHHHh
Q 030327          156 GCDITVEAYKNGELQELLEK  175 (179)
Q Consensus       156 G~del~~l~~~GeL~~~L~~  175 (179)
                      |||++.++.+.|+|.++|+.
T Consensus        77 G~Dd~~~l~e~g~L~~lL~~   96 (121)
T 1u6t_A           77 DYDAFFEARENNAVYAFLGL   96 (121)
T ss_dssp             EHHHHHHHHHTTCHHHHHTC
T ss_pred             chHHHHHhhhhChHHHHHcC
Confidence            99999999999999999953

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=99.84  E-value=1.8e-20  Score=131.62  Aligned_cols=86  Identities=27%  Similarity=0.483  Sum_probs=81.2

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHc
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKN  166 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~  166 (179)
                      +++|++|+.     +||++|++++.+|++++++|+.+||+.+++.++++.+.+|..++|++|+||+++||++++.+++++
T Consensus         5 m~~v~ly~~-----~~C~~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~l~~~g~~i~g~~~i~~~~~~   79 (92)
T 2khp_A            5 MVDVIIYTR-----PGCPYCARAKALLARKGAEFNEIDASATPELRAEMQERSGRNTFPQIFIGSVHVGGCDDLYALEDE   79 (92)
T ss_dssp             CCCEEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEESTTSHHHHHHHHHHHTSSCCCEEEETTEEEESHHHHHHHHTT
T ss_pred             cccEEEEEC-----CCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEcCHHHHHHHHHc
Confidence            357999999     599999999999999999999999999999999999888999999999999999999999999999


Q ss_pred             ccHHHHHHhhhc
Q 030327          167 GELQELLEKALC  178 (179)
Q Consensus       167 GeL~~~L~~a~~  178 (179)
                      |+|+++|+ +|+
T Consensus        80 ~~l~~~l~-~g~   90 (92)
T 2khp_A           80 GKLDSLLK-TGK   90 (92)
T ss_dssp             TCHHHHHH-HSS
T ss_pred             CCHHHHHh-ccC
Confidence            99999999 775

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=99.83  E-value=2.7e-20  Score=127.24  Aligned_cols=81  Identities=27%  Similarity=0.466  Sum_probs=76.7

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHccc
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGE  168 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~Ge  168 (179)
                      +|++|+.     +|||+|++++.+|+++|++|+.+||+.+++.++++.+.+|..++|++|+||+.+||++++.+++++|+
T Consensus         2 ~i~~y~~-----~~C~~C~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~l~~~g~~i~g~~~i~~~~~~g~   76 (82)
T 1fov_A            2 NVEIYTK-----ETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQHIGGYDDLYALDARGG   76 (82)
T ss_dssp             CEEEEEC-----SSCHHHHHHHHHHHHHTCCCEEEECTTCSHHHHHHHHHHSSCCSCEEEETTEEEESHHHHHHHHHTTC
T ss_pred             cEEEEEC-----CCChhHHHHHHHHHHCCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHHCCC
Confidence            6899998     59999999999999999999999999988888899888899999999999999999999999999999


Q ss_pred             HHHHHH
Q 030327          169 LQELLE  174 (179)
Q Consensus       169 L~~~L~  174 (179)
                      |+++|+
T Consensus        77 l~~~l~   82 (82)
T 1fov_A           77 LDPLLK   82 (82)
T ss_dssp             SHHHHC
T ss_pred             HHHHhC
Confidence            999874

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A

Probab=99.82  E-value=2.8e-20  Score=130.45  Aligned_cols=75  Identities=23%  Similarity=0.401  Sum_probs=69.1

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcC-----CCHHHHHHHHHhcCCC-----CcceEee-CCEEEeec
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNIL-----ENEMLRQGLKEYSSWP-----TFPQLYI-EGEFFGGC  157 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~-----~d~~~~~~L~~~sg~~-----tvP~VfI-dG~~IGG~  157 (179)
                      +|+||++. ++.++||+|.+++++|+++|++|+++||+     .+++.+++|++++|+.     ++|+||| ||++|||+
T Consensus         1 ~v~iY~~~-~~~~~Cp~C~~ak~~L~~~gi~y~~idI~~~~~~~~~~~~~~l~~~~g~~~~~~~tvP~v~i~~g~~igG~   79 (87)
T 1aba_A            1 MFKVYGYD-SNIHKCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPDGSHIGGF   79 (87)
T ss_dssp             CEEEEECC-TTTSCCHHHHHHHHHHHHTTCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEECTTSCEEESH
T ss_pred             CEEEEEeC-CCCCcCccHHHHHHHHHHcCCCEEEEEeeccccccCHHHHHHHHHHhCCCCCCCCccCEEEEECCEEEeCH
Confidence            48899994 44459999999999999999999999999     8899999999999999     9999999 99999999


Q ss_pred             HHHHHHH
Q 030327          158 DITVEAY  164 (179)
Q Consensus       158 del~~l~  164 (179)
                      |++.+++
T Consensus        80 d~l~~~~   86 (87)
T 1aba_A           80 DQLREYF   86 (87)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9999885

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=99.80  E-value=1.7e-19  Score=126.19  Aligned_cols=83  Identities=24%  Similarity=0.534  Sum_probs=76.9

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhc-CCCCcceEeeCCEEEeecHHHHHHHH
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYS-SWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~s-g~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      +++|++|++     +|||+|++++.+|++.+++|+.+||+  ++.++++.+.+ |..++|++|+||++|||++++.++++
T Consensus         5 m~~v~~y~~-----~~C~~C~~~~~~L~~~~i~~~~vdv~--~~~~~~l~~~~~~~~~vP~l~~~g~~i~g~~~i~~~~~   77 (89)
T 2klx_A            5 MKEIILYTR-----PNCPYCKRARDLLDKKGVKYTDIDAS--TSLRQEMVQRANGRNTFPQIFIGDYHVGGCDDLYALEN   77 (89)
T ss_dssp             CCCEEEESC-----SCCTTTHHHHHHHHHHTCCEEEECSC--HHHHHHHHHHHHSSCCSCEEEETTEECCSHHHHHHHHH
T ss_pred             cceEEEEEC-----CCChhHHHHHHHHHHcCCCcEEEECC--HHHHHHHHHHhCCCCCcCEEEECCEEEeChHHHHHHHH
Confidence            357999999     59999999999999999999999998  77778888888 99999999999999999999999999


Q ss_pred             cccHHHHHHhh
Q 030327          166 NGELQELLEKA  176 (179)
Q Consensus       166 ~GeL~~~L~~a  176 (179)
                      +|+|+++|++.
T Consensus        78 ~g~l~~~l~~~   88 (89)
T 2klx_A           78 KGKLDSLLQDV   88 (89)
T ss_dssp             HTTHHHHHHHH
T ss_pred             cCcHHHHHhhc
Confidence            99999999763

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=99.80  E-value=1.9e-19  Score=129.62  Aligned_cols=68  Identities=13%  Similarity=0.267  Sum_probs=62.4

Q ss_pred             cCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhc-CCCCcceEee-CCEEEeecH
Q 030327           86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYS-SWPTFPQLYI-EGEFFGGCD  158 (179)
Q Consensus        86 ~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~s-g~~tvP~VfI-dG~~IGG~d  158 (179)
                      ...+|+||++     +|||||.++|++|+++|++|+++||++|++.++++.+++ |.+++|+||| ||+.++|++
T Consensus         2 ~ta~I~vYs~-----~~Cp~C~~aK~~L~~~gi~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~i~Dg~~l~~~~   71 (92)
T 2lqo_A            2 VTAALTIYTT-----SWCGYCLRLKTALTANRIAYDEVDIEHNRAAAEFVGSVNGGNRTVPTVKFADGSTLTNPS   71 (92)
T ss_dssp             CSSCEEEEEC-----TTCSSHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHHSSSSSCSCEEEETTSCEEESCC
T ss_pred             CCCcEEEEcC-----CCCHhHHHHHHHHHhcCCceEEEEcCCCHHHHHHHHHHcCCCCEeCEEEEeCCEEEeCCC
Confidence            4568999999     599999999999999999999999999999999999886 8999999999 688888864

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=99.74  E-value=1.1e-17  Score=115.54  Aligned_cols=74  Identities=20%  Similarity=0.251  Sum_probs=65.6

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCH--HHHHHHHHhcCC-----CCcceEeeCCEEEeecHHH
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENE--MLRQGLKEYSSW-----PTFPQLYIEGEFFGGCDIT  160 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~--~~~~~L~~~sg~-----~tvP~VfIdG~~IGG~del  160 (179)
                      .+|++|++     ++||+|++++.+|+++|++|++++|+.++  ..++++.+.+|.     .++|+||+||++|||++++
T Consensus         4 m~v~ly~~-----~~Cp~C~~~~~~L~~~~i~~~~~~vd~~~~~~~~~el~~~~g~~~~~~~~vP~i~i~g~~i~g~~~i   78 (89)
T 3msz_A            4 MKVKIYTR-----NGCPYCVWAKQWFEENNIAFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQIFIDDEHIGGFTEL   78 (89)
T ss_dssp             CCEEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEECCSHHHHHHHHHHHHTTTCCSSCCCSSCEEEETTEEEESHHHH
T ss_pred             eEEEEEEc-----CCChhHHHHHHHHHHcCCCceEEEeecCCChhHHHHHHHHhCCCCCCCCccCEEEECCEEEeChHHH
Confidence            46999999     59999999999999999999999887653  356788888899     9999999999999999999


Q ss_pred             HHHHHc
Q 030327          161 VEAYKN  166 (179)
Q Consensus       161 ~~l~~~  166 (179)
                      .+++++
T Consensus        79 ~~~~~~   84 (89)
T 3msz_A           79 KANADK   84 (89)
T ss_dssp             HHTHHH
T ss_pred             HHHHHH
Confidence            998654

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=99.72  E-value=5.7e-17  Score=117.25  Aligned_cols=98  Identities=30%  Similarity=0.542  Sum_probs=87.7

Q ss_pred             HHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCH---HHHHHHHHhcCCCCcceEeeCCE
Q 030327           76 ELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENE---MLRQGLKEYSSWPTFPQLYIEGE  152 (179)
Q Consensus        76 ~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~---~~~~~L~~~sg~~tvP~VfIdG~  152 (179)
                      +.++.++++++.++|++|+.     +|||+|++++.+|++++++|..+||+.++   +.+..+.+.+|..++|++|+||+
T Consensus         8 ~~~~~~~~~~~~~~vv~f~a-----~~C~~C~~~~~~l~~~~~~~~~v~v~~~~~~~~~~~~l~~~~~v~~~Pt~~~~g~   82 (116)
T 2e7p_A            8 AALKKAKELASSAPVVVFSK-----TYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWTGRGTVPNVFIGGK   82 (116)
T ss_dssp             HHHHHHHHHHTSSSEEEEEC-----TTCHHHHHHHHHHHHHTCCCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEEETTE
T ss_pred             HHHHHHHHHHcCCCEEEEEC-----CCChhHHHHHHHHHHcCCCeEEEEccCCCChHHHHHHHHHHhCCCCcCEEEECCE
Confidence            45677888999999999988     59999999999999999999999997653   35567777789999999999999


Q ss_pred             EEeecHHHHHHHHcccHHHHHHhhhc
Q 030327          153 FFGGCDITVEAYKNGELQELLEKALC  178 (179)
Q Consensus       153 ~IGG~del~~l~~~GeL~~~L~~a~~  178 (179)
                      .+||++.+..++..++|.++|+++|+
T Consensus        83 ~v~~~~~~~~~~~~~~l~~~l~~~g~  108 (116)
T 2e7p_A           83 QIGGCDTVVEKHQRNELLPLLQDAAA  108 (116)
T ss_dssp             EEECHHHHHHHHHTTCHHHHHHHTTC
T ss_pred             EECChHHHHHHHhCChHHHHHHHccc
Confidence            99999999999999999999999886

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=99.70  E-value=3.8e-17  Score=148.94  Aligned_cols=93  Identities=25%  Similarity=0.494  Sum_probs=87.2

Q ss_pred             HHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC---HHHHHHHHHhcCCCCcceEeeCCEEE
Q 030327           78 KSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN---EMLRQGLKEYSSWPTFPQLYIEGEFF  154 (179)
Q Consensus        78 ~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d---~~~~~~L~~~sg~~tvP~VfIdG~~I  154 (179)
                      ++++++++++++|+||++.     +||||.+++++|++++++|+++||+.+   +++++++++++|+.++|+||+||++|
T Consensus         8 ~~~v~~~i~~~~v~vy~~~-----~Cp~C~~~k~~L~~~~i~~~~~dv~~~~~~~~~~~~l~~~~g~~tvP~v~i~g~~i   82 (598)
T 2x8g_A            8 SQWLRKTVDSAAVILFSKT-----TCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSKIETVPQMFVRGKFI   82 (598)
T ss_dssp             HHHHHHHHHHCSEEEEECT-----TCHHHHHHHHHHHHTTCCCEEEEGGGSTTHHHHHHHTHHHHSCCCSCEEEETTEEE
T ss_pred             HHHHHHHhccCCEEEEECC-----CChhHHHHHHHHHHCCCCcEEEEcccCcchHHHHHHHHHHhCCceeCEEEECCEEE
Confidence            5789999999999999995     999999999999999999999999765   78889999999999999999999999


Q ss_pred             eecHHHHHHHHcccHHHHHHh
Q 030327          155 GGCDITVEAYKNGELQELLEK  175 (179)
Q Consensus       155 GG~del~~l~~~GeL~~~L~~  175 (179)
                      ||+|++.++++.|+|++++..
T Consensus        83 gG~~~l~~~~~~g~L~~~l~~  103 (598)
T 2x8g_A           83 GDSQTVLKYYSNDELAGIVNE  103 (598)
T ss_dssp             ECHHHHHHHHHTTCHHHHHHC
T ss_pred             EeeehhhhhhhcCcchhhccc
Confidence            999999999999999999864

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=99.64  E-value=1.1e-16  Score=109.85  Aligned_cols=75  Identities=16%  Similarity=0.347  Sum_probs=64.4

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHh-----cCCCeEEEEcCCCHHHHHHHHHhcC--CCCcceEeeCCEEEeecHHHH
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKS-----LNAPFETVNILENEMLRQGLKEYSS--WPTFPQLYIEGEFFGGCDITV  161 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~-----~gv~y~~vdV~~d~~~~~~L~~~sg--~~tvP~VfIdG~~IGG~del~  161 (179)
                      +|++|++     +|||+|++++.+|++     .+++|..+|++++++.++++.+.+|  ..++|+||+||+.|||++++.
T Consensus         2 ~v~~f~~-----~~C~~C~~~~~~l~~l~~~~~~i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i~~~g~~i~~~~~l~   76 (85)
T 1ego_A            2 QTVIFGR-----SGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFVDQQHIGGYTDFA   76 (85)
T ss_dssp             EEEEECC-----TTSTHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEEETTEEEESSHHHH
T ss_pred             EEEEEeC-----CCCCCHHHHHHHHHHHHhcCCCceEEEEecccChHHHHHHHHHhCCCCceeCeEEECCEEEECHHHHH
Confidence            5889998     599999999999998     7899999999765444456777777  799999999999999999999


Q ss_pred             HHHHccc
Q 030327          162 EAYKNGE  168 (179)
Q Consensus       162 ~l~~~Ge  168 (179)
                      ++.++|-
T Consensus        77 ~~~~~~~   83 (85)
T 1ego_A           77 AWVKENL   83 (85)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            9987763

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=99.62  E-value=8e-16  Score=125.21  Aligned_cols=75  Identities=24%  Similarity=0.443  Sum_probs=67.0

Q ss_pred             hhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHH
Q 030327           84 VVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEA  163 (179)
Q Consensus        84 li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l  163 (179)
                      .+....|++|++     ++||+|++++++|+++|++|+++||+.+++ +++|++.+|+.++|+||+||++|||++++.++
T Consensus       166 ~i~~~~i~ly~~-----~~Cp~C~~a~~~L~~~~i~~~~~~i~~~~~-~~~l~~~~g~~~vP~~~~~g~~i~g~~~i~~~  239 (241)
T 1nm3_A          166 HQVQESISIFTK-----PGCPFCAKAKQLLHDKGLSFEEIILGHDAT-IVSVRAVSGRTTVPQVFIGGKHIGGSDDLEKY  239 (241)
T ss_dssp             SCCCCCEEEEEC-----SSCHHHHHHHHHHHHHTCCCEEEETTTTCC-HHHHHHHTCCSSSCEEEETTEEEESHHHHHHC
T ss_pred             ccccceEEEEEC-----CCChHHHHHHHHHHHcCCceEEEECCCchH-HHHHHHHhCCCCcCEEEECCEEEECHHHHHHH
Confidence            345778999999     599999999999999999999999988754 47888889999999999999999999999876


Q ss_pred             H
Q 030327          164 Y  164 (179)
Q Consensus       164 ~  164 (179)
                      .
T Consensus       240 l  240 (241)
T 1nm3_A          240 F  240 (241)
T ss_dssp             -
T ss_pred             h
Confidence            4

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=99.61  E-value=1.9e-15  Score=108.88  Aligned_cols=69  Identities=16%  Similarity=0.301  Sum_probs=60.1

Q ss_pred             cCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC-H----HHHHHHHHhcCCCCcceEeeCC-EEEeecHH
Q 030327           86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN-E----MLRQGLKEYSSWPTFPQLYIEG-EFFGGCDI  159 (179)
Q Consensus        86 ~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d-~----~~~~~L~~~sg~~tvP~VfIdG-~~IGG~de  159 (179)
                      ..++|++|++     +|||+|++++.+|++++++|+++||+.+ +    ++.+++++.+|..++|+||++| ++|||+++
T Consensus        20 ~~~~v~ly~~-----~~Cp~C~~ak~~L~~~~i~y~~vdI~~~~~~~~~~~~~~l~~~~g~~~vP~l~i~~~~~igg~~~   94 (103)
T 3nzn_A           20 DRGKVIMYGL-----STCVWCKKTKKLLTDLGVDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPTTIINDEKAIVGFKE   94 (103)
T ss_dssp             CCSCEEEEEC-----SSCHHHHHHHHHHHHHTBCEEEEEGGGCCHHHHHHHHHHHHHHCTTCCSCEEEETTTEEEESCCH
T ss_pred             CCCeEEEEcC-----CCCchHHHHHHHHHHcCCCcEEEEeeccCcccHHHHHHHHHHhCCCCccCEEEECCCEEEEcCCH
Confidence            4678999999     5999999999999999999999999863 3    3455566778999999999999 99999985

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=99.60  E-value=1.4e-15  Score=106.40  Aligned_cols=67  Identities=15%  Similarity=0.226  Sum_probs=59.2

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCC-----CHHHHHHHHHhcCCCCcceEeeCCEEEeecHH
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE-----NEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDI  159 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~-----d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~de  159 (179)
                      .+|+||+.     +|||+|++++.+|+++|++|+.+||+.     ++++.+++.+.+|..++|+|++||+++||++.
T Consensus        12 ~~v~ly~~-----~~Cp~C~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~~g~~i~G~~~   83 (92)
T 3ic4_A           12 AEVLMYGL-----STCPHCKRTLEFLKREGVDFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVKGDKHVLGYNE   83 (92)
T ss_dssp             SSSEEEEC-----TTCHHHHHHHHHHHHHTCCCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEETTEEEESCCH
T ss_pred             ceEEEEEC-----CCChHHHHHHHHHHHcCCCcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEECCEEEeCCCH
Confidence            46999999     599999999999999999999999973     24456888888899999999999999999963

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=99.58  E-value=3.2e-15  Score=101.84  Aligned_cols=64  Identities=13%  Similarity=0.319  Sum_probs=59.0

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecH
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCD  158 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~d  158 (179)
                      +|++|+.     +|||+|++++.+|++++++|..+|++++++..+.+++ .|..++|++|+||+.+||++
T Consensus         2 ~v~~f~~-----~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~-~g~~~vP~~~~~g~~~~g~~   65 (81)
T 1h75_A            2 RITIYTR-----NDCVQCHATKRAMENRGFDFEMINVDRVPEAAEALRA-QGFRQLPVVIAGDLSWSGFR   65 (81)
T ss_dssp             CEEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHH-TTCCSSCEEEETTEEEESCC
T ss_pred             EEEEEcC-----CCChhHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHH-hCCCccCEEEECCEEEecCC
Confidence            5899998     5999999999999999999999999999988887775 58999999999999999987

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=99.55  E-value=2.1e-14  Score=95.89  Aligned_cols=64  Identities=20%  Similarity=0.395  Sum_probs=58.8

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecH
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCD  158 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~d  158 (179)
                      +|++|+.     +||++|++++.+|+++|++|+.+|++.+++..++++. +|..++|++++||+.+||++
T Consensus         2 ~i~~y~~-----~~C~~C~~~~~~l~~~~i~~~~~di~~~~~~~~~~~~-~~~~~vP~l~~~g~~~~g~~   65 (75)
T 1r7h_A            2 SITLYTK-----PACVQCTATKKALDRAGLAYNTVDISLDDEARDYVMA-LGYVQAPVVEVDGEHWSGFR   65 (75)
T ss_dssp             CEEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHH-TTCBCCCEEEETTEEEESCC
T ss_pred             eEEEEeC-----CCChHHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHH-cCCCccCEEEECCeEEcCCC
Confidence            5889998     5999999999999999999999999999888888754 68999999999999999986

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=99.31  E-value=1.1e-12  Score=89.70  Aligned_cols=70  Identities=14%  Similarity=0.154  Sum_probs=54.3

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHH----HHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCE--EEeecHHHH
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQ----ILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGE--FFGGCDITV  161 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~----lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~--~IGG~del~  161 (179)
                      .+|++|++     +|||+|++++.    ++++++++|+.+||+.+++..+.. +.+|..++|++++||+  ++|+..+..
T Consensus         2 ~~~~~f~~-----~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~gv~~vPt~~i~g~~~~~G~~~~~~   75 (80)
T 2k8s_A            2 ASKAIFYH-----AGCPVCVSAEQAVANAIDPSKYTVEIVHLGTDKARIAEA-EKAGVKSVPALVIDGAAFHINFGAGID   75 (80)
T ss_dssp             CEEEEEEE-----CSCHHHHHHHHHHHHHSCTTTEEEEEEETTTCSSTHHHH-HHHTCCEEEEEEETTEEEEEEEEEEHH
T ss_pred             cceEEEeC-----CCCCchHHHHHHHHHHHHhcCCeEEEEEecCChhhHHHH-HHcCCCcCCEEEECCEEEEeccCcCHH
Confidence            46899999     59999999999    556678889999998642222333 4458999999999999  888876665


Q ss_pred             HH
Q 030327          162 EA  163 (179)
Q Consensus       162 ~l  163 (179)
                      ++
T Consensus        76 ~l   77 (80)
T 2k8s_A           76 DL   77 (80)
T ss_dssp             HH
T ss_pred             Hh
Confidence            55

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=99.31  E-value=1.1e-11  Score=87.68  Aligned_cols=59  Identities=20%  Similarity=0.262  Sum_probs=51.1

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCC-eEEEEcCCCHHHHHHHHHhcCCCCcceEe-eCCEEEeec
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAP-FETVNILENEMLRQGLKEYSSWPTFPQLY-IEGEFFGGC  157 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~-y~~vdV~~d~~~~~~L~~~sg~~tvP~Vf-IdG~~IGG~  157 (179)
                      +|++|++     +||++|+.++.+|++.+++ |..+||++|+++.+.    +|.. +|+|+ +||+.++|.
T Consensus         2 ~vv~f~a-----~~C~~C~~~~~~L~~~~~~~~~~vdid~~~~l~~~----~g~~-vPtl~~~~G~~v~g~   62 (87)
T 1ttz_A            2 ALTLYQR-----DDCHLCDQAVEALAQARAGAFFSVFIDDDAALESA----YGLR-VPVLRDPMGRELDWP   62 (87)
T ss_dssp             CEEEEEC-----SSCHHHHHHHHHHHHTTCCCEEEEECTTCHHHHHH----HTTT-CSEEECTTCCEEESC
T ss_pred             EEEEEEC-----CCCchHHHHHHHHHHHHHhheEEEECCCCHHHHHH----hCCC-cCeEEEECCEEEeCC
Confidence            5899999     5999999999999999997 999999999886554    3665 99999 899999653

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=99.27  E-value=6.8e-12  Score=90.10  Aligned_cols=65  Identities=18%  Similarity=0.259  Sum_probs=52.7

Q ss_pred             cCCcEEEEEeeCCCCCCCchHHHHHHHHH--hcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEE--EeecH
Q 030327           86 TGNKVVLFMKGTKDFPQCGFSHTVVQILK--SLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEF--FGGCD  158 (179)
Q Consensus        86 ~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~--~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~--IGG~d  158 (179)
                      ....|++|++     +||++|++++.+|+  ..+++|..+||+++. . +++.+.+| .++|++|+||+.  +||++
T Consensus        15 ~~~~v~~f~~-----~~C~~C~~~~~~L~~l~~~i~~~~vdi~~~~-~-~el~~~~g-~~vP~l~~~g~~~~~~g~~   83 (100)
T 1wjk_A           15 ALPVLTLFTK-----APCPLCDEAKEVLQPYKDRFILQEVDITLPE-N-STWYERYK-FDIPVFHLNGQFLMMHRVN   83 (100)
T ss_dssp             CCCEEEEEEC-----SSCHHHHHHHHHTSTTSSSSEEEEEETTSST-T-HHHHHHSS-SSCSEEEESSSEEEESSCC
T ss_pred             CCCEEEEEeC-----CCCcchHHHHHHHHHhhhCCeEEEEECCCcc-h-HHHHHHHC-CCCCEEEECCEEEEecCCC
Confidence            3456889988     59999999999999  567999999998221 1 45566678 999999999998  78876

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=99.22  E-value=3e-11  Score=89.02  Aligned_cols=61  Identities=21%  Similarity=0.189  Sum_probs=51.9

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHh----cCCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCEEE--eec
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKS----LNAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEFF--GGC  157 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~----~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~~I--GG~  157 (179)
                      ...|++|++     +||++|++++.+|++    ++++|+.+||++|+++.+.    +|.. +|+|  |+||+.+  |++
T Consensus        29 m~~vv~y~~-----~~C~~C~~a~~~L~~l~~e~~i~~~~vDId~d~~l~~~----ygv~-VP~l~~~~dG~~v~~g~~   97 (107)
T 2fgx_A           29 PRKLVVYGR-----EGCHLCEEMIASLRVLQKKSWFELEVINIDGNEHLTRL----YNDR-VPVLFAVNEDKELCHYFL   97 (107)
T ss_dssp             CCCEEEEEC-----SSCHHHHHHHHHHHHHHHHSCCCCEEEETTTCHHHHHH----STTS-CSEEEETTTTEEEECSSC
T ss_pred             ccEEEEEeC-----CCChhHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHH----hCCC-CceEEEEECCEEEEecCC
Confidence            457999999     599999999999998    7999999999999876543    4654 9999  9999998  444

>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19

Probab=99.01  E-value=3.1e-10  Score=95.96  Aligned_cols=67  Identities=16%  Similarity=0.267  Sum_probs=50.6

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhc----CC---CeEEEEcC----CC-------HHHHHHHHHhcCCCCc--ceE
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSL----NA---PFETVNIL----EN-------EMLRQGLKEYSSWPTF--PQL  147 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~----gv---~y~~vdV~----~d-------~~~~~~L~~~sg~~tv--P~V  147 (179)
                      ..|+||++     ++||+|.+++++|+++    ++   .|+..+++    .|       .+..+++.+..|..++  |||
T Consensus        44 ~~VelyTs-----~gCp~C~~Ak~lL~~~~~~~~vi~l~~~v~~~dylgw~D~~a~~~~~~r~~~~~~~~G~~tVyTPqI  118 (270)
T 2axo_A           44 GVVELFTS-----QGCASCPPADEALRKMIQKGDVVGLSYHVDYWNYLGWTDSLASKENTERQYGYMRALGRNGVYTPQA  118 (270)
T ss_dssp             CEEEEEEC-----TTCTTCHHHHHHHHHHHHHTSSEEEEEECSTTCSSSSCCTTCCHHHHHHHHHHHHHTTCSCCCSSEE
T ss_pred             cEEEEEeC-----CCCCChHHHHHHHHHhhccCCeeeEEEEEEEecccccccchhhhhhhHHHHHHHHHhCCCcccCCEE
Confidence            46999999     5999999999999998    76   45521121    22       2223456667799999  999


Q ss_pred             eeCCE-EEeecHH
Q 030327          148 YIEGE-FFGGCDI  159 (179)
Q Consensus       148 fIdG~-~IGG~de  159 (179)
                      ||||+ ++||+|.
T Consensus       119 ~Ing~~~v~G~d~  131 (270)
T 2axo_A          119 ILNGRDHVKGADV  131 (270)
T ss_dssp             EETTTEEEETTCH
T ss_pred             EECCEEeecCCCH
Confidence            99999 7999984

>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12

Probab=98.91  E-value=1.2e-09  Score=80.43  Aligned_cols=64  Identities=17%  Similarity=0.152  Sum_probs=51.5

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC----HHHHHHHHHhcC-------------------------
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN----EMLRQGLKEYSS-------------------------  140 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d----~~~~~~L~~~sg-------------------------  140 (179)
                      |+||++     |+|++|++++++|++.|++|+++||.++    .++++.+. ..|                         
T Consensus         2 i~iY~~-----~~C~~C~kak~~L~~~gi~~~~~di~~~~~~~~~l~~~~~-~~g~~~l~n~~~~~~k~l~~~~~~~~~~   75 (114)
T 1rw1_A            2 YVLYGI-----KACDTMKKARTWLDEHKVAYDFHDYKAVGIDREHLRRWCA-EHGWQTVLNRAGTTFRKLDEAQKADLDE   75 (114)
T ss_dssp             EEEEEC-----SSCHHHHHHHHHHHHTTCCEEEEEHHHHCCCHHHHHHHHH-HHCHHHHBCTTSHHHHTSCHHHHTTCCH
T ss_pred             EEEEEC-----CCChHHHHHHHHHHHCCCceEEEeecCCCCCHHHHHHHHH-hCChHHhccCCcHhHHhcCccccccCCH
Confidence            789999     5999999999999999999999999754    33433333 334                         


Q ss_pred             ------------CCCcceEeeCCEEEeecHH
Q 030327          141 ------------WPTFPQLYIEGEFFGGCDI  159 (179)
Q Consensus       141 ------------~~tvP~VfIdG~~IGG~de  159 (179)
                                  .-..|.|..||+.+-|+++
T Consensus        76 ~~~~~~l~~~p~likrPiv~~~~~~~vGf~~  106 (114)
T 1rw1_A           76 AKAIELMLAQPSMIKRPVLELGGRTLVGFKP  106 (114)
T ss_dssp             HHHHHHHHHCGGGBCSCEEECSSCEEESCCH
T ss_pred             HHHHHHHHhChhheeCcEEEECCEEEEeCCH
Confidence                        3468999999999989864

>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A

Probab=98.88  E-value=2e-09  Score=81.19  Aligned_cols=66  Identities=20%  Similarity=0.266  Sum_probs=52.0

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHh---cCC------------------------
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEY---SSW------------------------  141 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~---sg~------------------------  141 (179)
                      .|+||++     ++|++|++++++|++.|++|+++||+.++..+++|+++   +|.                        
T Consensus         2 mi~lY~~-----~~C~~C~ka~~~L~~~gi~y~~~di~~~~~~~~el~~~l~~~~~~~~~l~n~~~~~~k~l~~~~~~ls   76 (132)
T 1z3e_A            2 MVTLYTS-----PSCTSCRKARAWLEEHEIPFVERNIFSEPLSIDEIKQILRMTEDGTDEIISTRSKVFQKLNVNVESMP   76 (132)
T ss_dssp             CEEEEEC-----TTCHHHHHHHHHHHHTTCCEEEEETTTSCCCHHHHHHHHHTCSSCGGGTBCTTSHHHHHHCCCGGGSB
T ss_pred             eEEEEeC-----CCChHHHHHHHHHHHcCCceEEEEccCCCccHHHHHHHHHHcCCCHHHhhcCCchHHHhcCcccccCC
Confidence            3889999     69999999999999999999999998774333333332   221                        


Q ss_pred             --------------CCcceEeeCCEEEeecHH
Q 030327          142 --------------PTFPQLYIEGEFFGGCDI  159 (179)
Q Consensus       142 --------------~tvP~VfIdG~~IGG~de  159 (179)
                                    -..|.|.+||+.+-|+++
T Consensus        77 ~~~~~~~l~~~p~likrPiv~~~~~~~vGf~~  108 (132)
T 1z3e_A           77 LQDLYRLINEHPGLLRRPIIIDEKRLQVGYNE  108 (132)
T ss_dssp             HHHHHHHHHHCGGGBCSCEEECSSCEEESCCT
T ss_pred             HHHHHHHHHhCccceeCCEEEECCEEEEcCCH
Confidence                          268999999999888863

>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}

Probab=98.87  E-value=2.5e-09  Score=79.38  Aligned_cols=66  Identities=11%  Similarity=0.102  Sum_probs=53.1

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCH---HHHHHHHHhcC-------------------------
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENE---MLRQGLKEYSS-------------------------  140 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~---~~~~~L~~~sg-------------------------  140 (179)
                      .|+||++     |+|++|++++++|++.|++|+++||..++   +..+++.+.+|                         
T Consensus         6 ~i~iY~~-----~~C~~C~ka~~~L~~~gi~y~~~di~~~~~~~~~l~~~~~~~g~~~l~n~~~~~~k~l~~~~~~~~~~   80 (120)
T 2kok_A            6 SVTIYGI-----KNCDTMKKARIWLEDHGIDYTFHDYKKEGLDAETLDRFLKTVPWEQLLNRAGTTFRKLPEDVRSNVDA   80 (120)
T ss_dssp             CEEEEEC-----SSCHHHHHHHHHHHHHTCCEEEEEHHHHCCCHHHHHHHHHHSCGGGTBCSSSHHHHHSCHHHHHSCCH
T ss_pred             EEEEEEC-----CCChHHHHHHHHHHHcCCcEEEEeeeCCCCCHHHHHHHHHHcChHhhccCCchhhHhcCchhhccCCH
Confidence            5999999     59999999999999999999999996543   33333334456                         


Q ss_pred             ------------CCCcceEeeCCEEEeecHH
Q 030327          141 ------------WPTFPQLYIEGEFFGGCDI  159 (179)
Q Consensus       141 ------------~~tvP~VfIdG~~IGG~de  159 (179)
                                  .-..|.|..+|+.+-|+++
T Consensus        81 ~~~~~~l~~~p~likrPiv~~~~~~~vGf~~  111 (120)
T 2kok_A           81 ASARELMLAQPSMVKRPVLERDGKLMVGFKP  111 (120)
T ss_dssp             HHHHHHHHHCGGGBCSSEEEETTEEEECCCH
T ss_pred             HHHHHHHHhCcccEECCEEEECCEEEEeCCH
Confidence                        3468999999999999874

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=98.69  E-value=5.9e-09  Score=88.87  Aligned_cols=82  Identities=10%  Similarity=0.074  Sum_probs=62.5

Q ss_pred             HHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCC-CH-HHHHHHHHhcCCCCcceEeeCCEEE
Q 030327           77 LKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE-NE-MLRQGLKEYSSWPTFPQLYIEGEFF  154 (179)
Q Consensus        77 ~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~-d~-~~~~~L~~~sg~~tvP~VfIdG~~I  154 (179)
                      .+..+.+.+++..++.|..     ||||+|++++.+|++..-++..+|++. |. +..+++.+..|..++|++|+||+.+
T Consensus       188 ~~~~la~~l~~~~vV~F~A-----~WC~~Ck~l~p~le~lA~~l~~Vd~d~~d~~~~~~~la~~~gI~~vPT~~i~G~~~  262 (291)
T 3kp9_A          188 LAVGLAAHLRQIGGTMYGA-----YWCPHCQDQKELFGAAFDQVPYVECSPNGPGTPQAQECTEAGITSYPTWIINGRTY  262 (291)
T ss_dssp             THHHHHHHHHHTTCEEEEC-----TTCHHHHHHHHHHGGGGGGSCEEESCSSCSSSCCCHHHHTTTCCSTTEEEETTEEE
T ss_pred             HHHHHHHHhCCCCEEEEEC-----CCCHHHHHHHHHHHHHHHHcCEEEEeecCchhhHHHHHHHcCCcccCeEEECCEEe
Confidence            3455666777778999998     699999999999999865566777763 22 2234556667999999999999999


Q ss_pred             eecHHHHHH
Q 030327          155 GGCDITVEA  163 (179)
Q Consensus       155 GG~del~~l  163 (179)
                      .|..+..++
T Consensus       263 ~G~~~~~~L  271 (291)
T 3kp9_A          263 TGVRSLEAL  271 (291)
T ss_dssp             ESCCCHHHH
T ss_pred             cCCCCHHHH
Confidence            998655444

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.60  E-value=1.6e-07  Score=84.58  Aligned_cols=90  Identities=13%  Similarity=0.136  Sum_probs=69.5

Q ss_pred             ccCCHHHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcc
Q 030327           71 AALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFP  145 (179)
Q Consensus        71 ~~~~~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP  145 (179)
                      ...+++..++++++.....|++|+.     +|||+|+.+..+|+++     ++.+..+|+++++++    .+.+|..++|
T Consensus       102 ~~~~~~~~~~i~~~~~~~~i~~f~a-----~~C~~C~~~~~~l~~~a~~~~~v~~~~vd~~~~~~~----~~~~~i~svP  172 (521)
T 1hyu_A          102 SKEAQSLLEQIRDIDGDFEFETYYS-----LSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQNE----ITERNVMGVP  172 (521)
T ss_dssp             CCSCHHHHHHHHHCCSCEEEEEEEC-----TTCSSHHHHHHHHHHHHHHCTTEEEEEEETTTCHHH----HHHTTCCSSS
T ss_pred             CCCCHHHHHHHHhcCCCcceEEEEC-----CCCcCcHHHHHHHHHHHhHcCceEEEEEechhhHHH----HHHhCCCccC
Confidence            3457777787876666667899998     5999999999988764     466888888877664    4445888999


Q ss_pred             eEeeCCEEEeec----HHHHHHHHcccH
Q 030327          146 QLYIEGEFFGGC----DITVEAYKNGEL  169 (179)
Q Consensus       146 ~VfIdG~~IGG~----del~~l~~~GeL  169 (179)
                      ++++||+.++.-    +++.++.+.+.+
T Consensus       173 t~~i~g~~~~~G~~~~~~l~~~l~~~~~  200 (521)
T 1hyu_A          173 AVFVNGKEFGQGRMTLTEIVAKVDTGAE  200 (521)
T ss_dssp             EEEETTEEEEESCCCHHHHHHHHCCSSC
T ss_pred             EEEECCEEEecCCCCHHHHHHHHhhccc
Confidence            999999999743    677877777754

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=98.59  E-value=2.3e-08  Score=72.21  Aligned_cols=73  Identities=10%  Similarity=0.079  Sum_probs=53.6

Q ss_pred             hhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHH--HHHHHHHhcCCCCcceEeeCCEEEeecHHH
Q 030327           83 KVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEM--LRQGLKEYSSWPTFPQLYIEGEFFGGCDIT  160 (179)
Q Consensus        83 ~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~--~~~~L~~~sg~~tvP~VfIdG~~IGG~del  160 (179)
                      +......|+.|+.     +||++|+++...|++..-.|..+|++.+..  ....+.+..|...+|.+++||+.+.|....
T Consensus         9 ~~~~k~~vV~F~A-----~WC~~C~~~~p~~~~~a~~~~~v~~~~~~~~~~~~~l~~~~~V~~~PT~~i~G~~~~G~~~~   83 (106)
T 3kp8_A            9 AHLRQIGGTMYGA-----YWCPHCQDQKELFGAAFDQVPYVECSPNGPGTPQAQECTEAGITSYPTWIINGRTYTGVRSL   83 (106)
T ss_dssp             HHHHHHTCEEEEC-----TTCHHHHHHHHHHGGGGGGSCEEESCTTCTTSCCCHHHHHTTCCSSSEEEETTEEEESCCCH
T ss_pred             HhcCCCEEEEEEC-----CCCHHHHHHHHHHHHHHHhCCEEEEecccccchhHHHHHHcCCeEeCEEEECCEEecCCCCH
Confidence            3344445788887     599999999999998876777888873321  223455556889999999999988776443

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=98.54  E-value=6.1e-08  Score=64.90  Aligned_cols=60  Identities=17%  Similarity=0.403  Sum_probs=47.5

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCE--EEee
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGE--FFGG  156 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~--~IGG  156 (179)
                      ..|++|+.     +||++|+++...|++.      ++.+..+|+++++++    .+..|...+|.+++||+  +.|.
T Consensus         3 ~~vv~f~~-----~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~G~~~~~G~   70 (85)
T 1nho_A            3 VNIEVFTS-----PTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREK----AIEYGLMAVPAIAINGVVRFVGA   70 (85)
T ss_dssp             CCEEEESC-----SSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGGG----GGGTCSSCSSEEEETTTEEEECS
T ss_pred             EEEEEEEC-----CCCcchHHHHHHHHHHHHHhcCCeEEEEEECCCCHHH----HHhCCceeeCEEEECCEEEEccC
Confidence            35777777     5999999999988763      688999999887643    34458889999999998  5664

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=98.46  E-value=9.7e-07  Score=72.11  Aligned_cols=73  Identities=18%  Similarity=0.228  Sum_probs=53.8

Q ss_pred             CCHHHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHh----------cCCCeEEEEcCCCHHHHHHHHHhcCCC
Q 030327           73 LTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKS----------LNAPFETVNILENEMLRQGLKEYSSWP  142 (179)
Q Consensus        73 ~~~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~----------~gv~y~~vdV~~d~~~~~~L~~~sg~~  142 (179)
                      .+++..+.++++-....|++|+.     |||++|+++...|++          .++.+..+|+++++++.+    ..|..
T Consensus       125 l~~~~~~~~~~~~~~~~vv~F~a-----~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~~~~~~~----~~~V~  195 (243)
T 2hls_A          125 LEDATKEALKSLKGRVHIETIIT-----PSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENPDIAD----KYGVM  195 (243)
T ss_dssp             CCHHHHHHHHHCCSCEEEEEEEC-----SSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTTCHHHHH----HTTCC
T ss_pred             CCHHHHHHHHHcCCCcEEEEEEC-----CCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECccCHHHHH----HcCCe
Confidence            44555555555444444666777     699999999999866          357888999988876533    35788


Q ss_pred             CcceEeeCCEEE
Q 030327          143 TFPQLYIEGEFF  154 (179)
Q Consensus       143 tvP~VfIdG~~I  154 (179)
                      ++|++++||+.+
T Consensus       196 ~vPt~~i~G~~~  207 (243)
T 2hls_A          196 SVPSIAINGYLV  207 (243)
T ss_dssp             SSSEEEETTEEE
T ss_pred             eeCeEEECCEEE
Confidence            999999999854

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=98.44  E-value=5.7e-08  Score=65.03  Aligned_cols=57  Identities=21%  Similarity=0.398  Sum_probs=44.3

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEE
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEF  153 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~  153 (179)
                      ..|++|+.     +||++|+++...|++.      ++.+..+|+++++++    .+..|...+|.+++||+.
T Consensus         4 ~~vv~f~~-----~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~G~~   66 (85)
T 1fo5_A            4 VKIELFTS-----PMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQK----AMEYGIMAVPTIVINGDV   66 (85)
T ss_dssp             EEEEEEEC-----CCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCCT----TTSTTTCCSSEEEETTEE
T ss_pred             eEEEEEeC-----CCCCchHHHHHHHHHHHHHcCCceEEEEEECCCCHHH----HHHCCCcccCEEEECCEE
Confidence            34777777     5999999999888763      577888899877643    344578899999999984

>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12

Probab=98.43  E-value=1.2e-07  Score=70.39  Aligned_cols=45  Identities=24%  Similarity=0.417  Sum_probs=37.9

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhc
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYS  139 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~s  139 (179)
                      |+||++     |+|++|++++++|++.|++|+++|+.+++.-+++|.++.
T Consensus         2 i~iY~~-----~~C~~c~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~l   46 (120)
T 3l78_A            2 VTLFLS-----PSCTSCRKARAWLNRHDVVFQEHNIMTSPLSRDELLKIL   46 (120)
T ss_dssp             EEEEEC-----SSCHHHHHHHHHHHHTTCCEEEEETTTSCCCHHHHHHHH
T ss_pred             EEEEeC-----CCCHHHHHHHHHHHHcCCCeEEEecccCCCcHHHHHHHH
Confidence            789999     599999999999999999999999988755555555543

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=98.40  E-value=7.2e-07  Score=64.09  Aligned_cols=67  Identities=18%  Similarity=0.382  Sum_probs=47.5

Q ss_pred             HHhhhcCC-cEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CCE
Q 030327           81 LDKVVTGN-KVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGE  152 (179)
Q Consensus        81 l~~li~~~-~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG~  152 (179)
                      ++++++.+ .++|+..+    +||++|+++...|++.     ++.+..+|+++++++.+    ..|...+|.+++  +|+
T Consensus        23 ~~~~~~~~k~vvv~F~a----~wC~~C~~~~p~l~~~~~~~~~v~~~~vd~~~~~~l~~----~~~v~~~Pt~~~~~~G~   94 (114)
T 2oe3_A           23 FRNLIKQNDKLVIDFYA----TWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAK----ECEVTAMPTFVLGKDGQ   94 (114)
T ss_dssp             HHHHHHHCSEEEEEEEC----TTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHHHHH----HTTCCSBSEEEEEETTE
T ss_pred             HHHHHhCCCEEEEEEEC----CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHH----HCCCCcccEEEEEeCCe
Confidence            44444444 45555554    7999999999888765     58889999988876543    346778888866  898


Q ss_pred             EEe
Q 030327          153 FFG  155 (179)
Q Consensus       153 ~IG  155 (179)
                      .++
T Consensus        95 ~~~   97 (114)
T 2oe3_A           95 LIG   97 (114)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            754

>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A

Probab=98.38  E-value=6.9e-08  Score=73.91  Aligned_cols=46  Identities=17%  Similarity=0.328  Sum_probs=38.4

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhc
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYS  139 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~s  139 (179)
                      .|+||+.     |+|++|++++++|++.|++|+++|+.+++..+++|.++.
T Consensus         3 ~itiY~~-----p~C~~crkak~~L~~~gi~~~~idi~~~~~~~~eL~~~~   48 (141)
T 1s3c_A            3 NITIYHN-----PASGTSRNTLEMIRNSGTEPTIILYLENPPSRDELVKLI   48 (141)
T ss_dssp             CCEEECC-----TTCHHHHHHHHHHHHTTCCCEEECTTTSCCCHHHHHHHH
T ss_pred             cEEEEEC-----CCChHHHHHHHHHHHcCCCEEEEECCCCCccHHHHHHHh
Confidence            5889999     699999999999999999999999988755555554443

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=98.35  E-value=2.8e-06  Score=60.24  Aligned_cols=66  Identities=12%  Similarity=0.256  Sum_probs=48.0

Q ss_pred             HhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CCEEE
Q 030327           82 DKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEFF  154 (179)
Q Consensus        82 ~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG~~I  154 (179)
                      +.+.....++++...    +||++|+++...|++.     ++.+..+|+++++++.    +..|...+|.+++  ||+.+
T Consensus        14 ~~~~~~~~~vv~f~a----~wC~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~l~----~~~~v~~~Pt~~~~~~G~~v   85 (110)
T 2l6c_A           14 AHFEGLSDAIVFFHK----NLCPHCKNMEKVLDKFGARAPQVAISSVDSEARPELM----KELGFERVPTLVFIRDGKVA   85 (110)
T ss_dssp             HHHTTCSEEEEEEEC----SSCSTHHHHHHHHHHHHTTCTTSCEEEEEGGGCHHHH----HHTTCCSSCEEEEEESSSEE
T ss_pred             HHHHcCCCEEEEEEC----CCCHhHHHHHHHHHHHHHHCCCcEEEEEcCcCCHHHH----HHcCCcccCEEEEEECCEEE
Confidence            334444555555444    6999999999999775     4678888988776643    3457788999987  99888


Q ss_pred             e
Q 030327          155 G  155 (179)
Q Consensus       155 G  155 (179)
                      +
T Consensus        86 ~   86 (110)
T 2l6c_A           86 K   86 (110)
T ss_dssp             E
T ss_pred             E
Confidence            7

>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0

Probab=98.32  E-value=2.8e-07  Score=68.61  Aligned_cols=45  Identities=13%  Similarity=0.333  Sum_probs=37.9

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHh
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEY  138 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~  138 (179)
                      -|+||+.     |+|++|++++++|++.|++|+++|+.+++.-+++|.++
T Consensus         4 Mi~iY~~-----~~C~~c~ka~~~L~~~gi~~~~~di~~~~~~~~eL~~~   48 (120)
T 3fz4_A            4 MLTFYEY-----PKCSTCRRAKAELDDLAWDYDAIDIKKNPPAASLIRNW   48 (120)
T ss_dssp             SEEEEEC-----SSCHHHHHHHHHHHHHTCCEEEEETTTSCCCHHHHHHH
T ss_pred             eEEEEeC-----CCChHHHHHHHHHHHcCCceEEEEeccCchhHHHHHHH
Confidence            3889999     69999999999999999999999998875555555444

>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}

Probab=98.32  E-value=1.5e-07  Score=70.09  Aligned_cols=46  Identities=22%  Similarity=0.345  Sum_probs=38.0

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHh
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEY  138 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~  138 (179)
                      ..|+||+.     |+|++|++++++|++.|++|+++|+.+++.-+++|.++
T Consensus         5 ~~i~iY~~-----p~C~~c~ka~~~L~~~gi~~~~~di~~~~~~~~eL~~~   50 (121)
T 3rdw_A            5 KDVTIYHN-----PRCSKSRETLALVEQQGITPQVVLYLETPPSVDKLKEL   50 (121)
T ss_dssp             -CCEEECC-----TTCHHHHHHHHHHHTTTCCCEEECTTTSCCCHHHHHHH
T ss_pred             CcEEEEEC-----CCCHHHHHHHHHHHHcCCCcEEEeeccCCCcHHHHHHH
Confidence            35899999     69999999999999999999999998875544444443

>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0

Probab=98.31  E-value=4.1e-07  Score=67.70  Aligned_cols=45  Identities=18%  Similarity=0.318  Sum_probs=37.4

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHh
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEY  138 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~  138 (179)
                      .|+||+.     |+|++|++++++|++.|++|+++|+.+++.-+++|.++
T Consensus         5 ~i~iY~~-----p~C~~c~ka~~~L~~~gi~~~~~di~~~~~~~~eL~~~   49 (120)
T 3gkx_A            5 KTLFLQY-----PACSTCQKAKKWLIENNIEYTNRLIVDDNPTVEELKAW   49 (120)
T ss_dssp             CCEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEETTTTCCCHHHHHHH
T ss_pred             EEEEEEC-----CCChHHHHHHHHHHHcCCceEEEecccCcCCHHHHHHH
Confidence            4899999     69999999999999999999999998775444444433

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=98.31  E-value=4.3e-06  Score=59.16  Aligned_cols=69  Identities=19%  Similarity=0.354  Sum_probs=49.1

Q ss_pred             HHHHhhhcCCc-EEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--C
Q 030327           79 STLDKVVTGNK-VVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--E  150 (179)
Q Consensus        79 ~~l~~li~~~~-Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--d  150 (179)
                      +.++++++.++ ++|+...    +||++|++....|.+.     ++.+..+|+++++++.    +..+...+|.+++  +
T Consensus        15 ~~f~~~~~~~k~vlv~f~a----~wC~~C~~~~p~l~~l~~~~~~~~~~~vd~~~~~~l~----~~~~v~~~Pt~~~~~~   86 (109)
T 3f3q_A           15 SEFDSAIAQDKLVVVDFYA----TWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVA----QKNEVSAMPTLLLFKN   86 (109)
T ss_dssp             HHHHHHTTSSSCEEEEEEC----TTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHH----HHTTCCSSSEEEEEET
T ss_pred             HHHHHHHhcCCEEEEEEEC----CcCHhHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHH----HHcCCCccCEEEEEEC
Confidence            34555665444 5555544    6999999999888664     5778889998887654    3457778998865  8


Q ss_pred             CEEEe
Q 030327          151 GEFFG  155 (179)
Q Consensus       151 G~~IG  155 (179)
                      |+.+.
T Consensus        87 G~~~~   91 (109)
T 3f3q_A           87 GKEVA   91 (109)
T ss_dssp             TEEEE
T ss_pred             CEEEE
Confidence            98776

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=98.30  E-value=4.2e-06  Score=57.74  Aligned_cols=62  Identities=21%  Similarity=0.322  Sum_probs=45.5

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CCEEEee
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEFFGG  156 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG~~IGG  156 (179)
                      ...++|+..+    +||++|+++...|.+.     ++.+..+|+++++++.+    ..+...+|.+++  +|+.++.
T Consensus        20 ~~~~~v~f~~----~~C~~C~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~----~~~v~~~Pt~~~~~~g~~~~~   88 (105)
T 3m9j_A           20 DKLVVVDFSA----TWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVAS----ESEVKSMPTFQFFKKGQKVGE   88 (105)
T ss_dssp             TSCEEEEEEC----TTCHHHHHHHHHHHHHHHHSTTSEEEEEETTTCHHHHH----HTTCCBSSEEEEEETTEEEEE
T ss_pred             CCeEEEEEEC----CCChhhHHHHHHHHHHHHHccCeEEEEEEhhhhHHHHH----HcCCCcCcEEEEEECCeEEEE
Confidence            4445555544    6999999999988763     67788899988876544    347778998866  8987753

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=98.30  E-value=4.1e-06  Score=60.92  Aligned_cols=73  Identities=19%  Similarity=0.276  Sum_probs=50.3

Q ss_pred             HHHHHHHHhhh-cCCcEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEe
Q 030327           75 PELKSTLDKVV-TGNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQLY  148 (179)
Q Consensus        75 ~~~~~~l~~li-~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~Vf  148 (179)
                      ++.++.+++.. ....++|+...    +||++|++....|+++     ++.+..+|+++++++.    +..|...+|.++
T Consensus        25 ~~~~~~l~~~~~~~k~vvv~f~a----~wC~~C~~~~~~l~~l~~~~~~v~~~~vd~d~~~~l~----~~~~v~~~Pt~~   96 (124)
T 1xfl_A           25 ETWNEQLQKANESKTLVVVDFTA----SWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVA----SDWAIQAMPTFM   96 (124)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEEEC----TTCHHHHHHHHHHHHHHHHCSSEEEEEEETTTSHHHH----HHTTCCSSSEEE
T ss_pred             HHHHHHHHHhhhcCCEEEEEEEC----CCCHHHHHHHHHHHHHHHHCCCcEEEEEECccCHHHH----HHcCCCccCEEE
Confidence            45555565543 23445555554    6999999999888664     5677888888776544    345777899887


Q ss_pred             e--CCEEEe
Q 030327          149 I--EGEFFG  155 (179)
Q Consensus       149 I--dG~~IG  155 (179)
                      +  +|+.++
T Consensus        97 ~~~~G~~~~  105 (124)
T 1xfl_A           97 FLKEGKILD  105 (124)
T ss_dssp             EEETTEEEE
T ss_pred             EEECCEEEE
Confidence            6  898764

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=98.29  E-value=6.1e-06  Score=57.67  Aligned_cols=72  Identities=14%  Similarity=0.261  Sum_probs=47.5

Q ss_pred             HHHHHHHhhh-cCCcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEe
Q 030327           76 ELKSTLDKVV-TGNKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQLY  148 (179)
Q Consensus        76 ~~~~~l~~li-~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~Vf  148 (179)
                      +.++.+.+.- ....++|+...    +||++|+.+...|++.      ++.+..+|+++++++.+.    .|...+|.++
T Consensus        12 ~~~~~l~~~~~~~~~~vv~f~~----~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~----~~v~~~Pt~~   83 (112)
T 1ep7_A           12 AWDAQLAKGKEEHKPIVVDFTA----TWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEA----AGITAMPTFH   83 (112)
T ss_dssp             HHHHHHHHHHHHTCCEEEEEEC----TTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHHHHHH----HTCCBSSEEE
T ss_pred             HHHHHHHhhcccCCeEEEEEEC----CCCHHHHHHHHHHHHHHHHcCCCeEEEEEECCchHHHHHH----cCCCcccEEE
Confidence            4444444322 13445544444    6999999999888654      477888888887765443    3667889886


Q ss_pred             e--CCEEEe
Q 030327          149 I--EGEFFG  155 (179)
Q Consensus       149 I--dG~~IG  155 (179)
                      +  +|+.+.
T Consensus        84 ~~~~G~~~~   92 (112)
T 1ep7_A           84 VYKDGVKAD   92 (112)
T ss_dssp             EEETTEEEE
T ss_pred             EEECCeEEE
Confidence            6  898754

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=98.29  E-value=7.6e-06  Score=60.58  Aligned_cols=72  Identities=13%  Similarity=0.235  Sum_probs=58.7

Q ss_pred             HHhhhc-CCcEEEEEeeCCCCCCCchHHHHHHHHHhc----CCCeEEEEcCCCHHHHHHHHHhcCCC-CcceE--eeCCE
Q 030327           81 LDKVVT-GNKVVLFMKGTKDFPQCGFSHTVVQILKSL----NAPFETVNILENEMLRQGLKEYSSWP-TFPQL--YIEGE  152 (179)
Q Consensus        81 l~~li~-~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~----gv~y~~vdV~~d~~~~~~L~~~sg~~-tvP~V--fIdG~  152 (179)
                      ++++++ ..+|+||.-+    .|||.|+.+...|++.    ++++..+||+++.++-.++.+..|-. ..||+  |.||+
T Consensus        17 f~~ii~~~~~vvi~kha----twCgpc~~~~~~~e~~~~~~~v~~~~vdVde~r~~Sn~IA~~~~V~h~sPq~il~k~G~   92 (112)
T 3iv4_A           17 FEQVIEENKYVFVLKHS----ETCPISANAYDQFNKFLYERDMDGYYLIVQQERDLSDYIAKKTNVKHESPQAFYFVNGE   92 (112)
T ss_dssp             HHHHHHHCSEEEEEEEC----TTCHHHHHHHHHHHHHHHHHTCCEEEEEGGGGHHHHHHHHHHHTCCCCSSEEEEEETTE
T ss_pred             HHHHHhcCCCEEEEEEC----CcCHhHHHHHHHHHHHhccCCceEEEEEeecCchhhHHHHHHhCCccCCCeEEEEECCE
Confidence            455554 5667777776    5999999999888765    79999999999999888898888988 59998  56999


Q ss_pred             EEee
Q 030327          153 FFGG  156 (179)
Q Consensus       153 ~IGG  156 (179)
                      .+..
T Consensus        93 ~v~~   96 (112)
T 3iv4_A           93 MVWN   96 (112)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8875

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=98.27  E-value=7.2e-06  Score=57.54  Aligned_cols=61  Identities=18%  Similarity=0.347  Sum_probs=42.2

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc-------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CCEEEe
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEFFG  155 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG~~IG  155 (179)
                      ...++|+..+    +||++|+++...|++.       ++.+..+|+++++++.    +..|...+|.+++  +|+.++
T Consensus        21 ~~~~~v~f~a----~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~----~~~~v~~~Pt~~~~~~G~~~~   90 (112)
T 3d6i_A           21 DKLIVLYFHT----SWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSEIS----ELFEISAVPYFIIIHKGTILK   90 (112)
T ss_dssp             TCCEEEEEEC----CC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTTCHHHH----HHTTCCSSSEEEEEETTEEEE
T ss_pred             CCEEEEEEEC----CCCHHHHHHHHHHHHHHHhcCCCCEEEEEEecccCHHHH----HHcCCCcccEEEEEECCEEEE
Confidence            3455555554    6999999999888632       5778888998877543    3457778998866  998765

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=98.27  E-value=5.8e-06  Score=58.41  Aligned_cols=61  Identities=15%  Similarity=0.251  Sum_probs=44.4

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CCEEEe
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEFFG  155 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG~~IG  155 (179)
                      ...++|+..+    +||++|+++...|++.     ++.+..+|+++++++.    +..|...+|.+++  +|+.+.
T Consensus        26 ~k~vlv~f~a----~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~----~~~~v~~~Pt~~~~~~G~~~~   93 (112)
T 1syr_A           26 NELVIVDFFA----EWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVT----EKENITSMPTFKVYKNGSSVD   93 (112)
T ss_dssp             CSEEEEEEEC----TTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTTHHHH----HHTTCCSSSEEEEEETTEEEE
T ss_pred             CCeEEEEEEC----CCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCCHHHH----HHcCCCcccEEEEEECCcEEE
Confidence            3445555554    6999999999888663     5788889998877543    3457778998866  888754

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=98.27  E-value=4.3e-06  Score=59.93  Aligned_cols=71  Identities=21%  Similarity=0.339  Sum_probs=48.3

Q ss_pred             HHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee-
Q 030327           76 ELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI-  149 (179)
Q Consensus        76 ~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI-  149 (179)
                      +.++.+++. ....++|+...    +||++|+++...|++.     ++.+..+|+++++++.+    ..|...+|.+++ 
T Consensus        21 ~f~~~l~~~-~~k~vlv~F~a----~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~----~~~v~~~Pt~~~~   91 (116)
T 3qfa_C           21 AFQEALDAA-GDKLVVVDFSA----TWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVAS----ECEVKSMPTFQFF   91 (116)
T ss_dssp             HHHHHHHHH-TTSCEEEEEEC----TTCHHHHHHHHHHHHHHTTCTTSEEEEEETTTTHHHHH----HTTCCSSSEEEEE
T ss_pred             HHHHHHHhc-CCCEEEEEEEC----CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHH----HcCCccccEEEEE
Confidence            344444433 34455555554    6999999999998774     46678888888776543    347778998866 


Q ss_pred             -CCEEEe
Q 030327          150 -EGEFFG  155 (179)
Q Consensus       150 -dG~~IG  155 (179)
                       +|+.+.
T Consensus        92 ~~G~~~~   98 (116)
T 3qfa_C           92 KKGQKVG   98 (116)
T ss_dssp             SSSSEEE
T ss_pred             eCCeEEE
Confidence             887664

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=98.25  E-value=6.2e-06  Score=57.60  Aligned_cols=73  Identities=16%  Similarity=0.284  Sum_probs=48.9

Q ss_pred             HHHHHHHHhhhc-CCcEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEe
Q 030327           75 PELKSTLDKVVT-GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQLY  148 (179)
Q Consensus        75 ~~~~~~l~~li~-~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~Vf  148 (179)
                      ++.++.++.... ...++|+..+    +||++|+.+...|++.     ++.+..+|++.++++.+.+    |...+|.++
T Consensus        13 ~~~~~~~~~~~~~~~~~vv~f~~----~~C~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~----~v~~~Pt~~   84 (113)
T 1ti3_A           13 DTWKEHFEKGKGSQKLIVVDFTA----SWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEW----NVEAMPTFI   84 (113)
T ss_dssp             HHHHHHHHHHTTSSSEEEEEEEC----SSCHHHHHHHHHHHHHHHHCSSEEEEEEETTTCHHHHHHH----HCSSTTEEE
T ss_pred             HHHHHHHHHhhhcCCeEEEEEEC----CCCHHHHHHHHHHHHHHHhCCCcEEEEEEccccHHHHHhC----CCCcccEEE
Confidence            345555555443 3445555544    6999999998887654     5778888888887765554    455788776


Q ss_pred             e--CCEEEe
Q 030327          149 I--EGEFFG  155 (179)
Q Consensus       149 I--dG~~IG  155 (179)
                      +  +|+.++
T Consensus        85 ~~~~G~~~~   93 (113)
T 1ti3_A           85 FLKDGKLVD   93 (113)
T ss_dssp             EEETTEEEE
T ss_pred             EEeCCEEEE
Confidence            6  898654

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=98.25  E-value=8.1e-06  Score=57.43  Aligned_cols=73  Identities=19%  Similarity=0.321  Sum_probs=49.5

Q ss_pred             HHHHHHHHhhh-cCCcEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEe
Q 030327           75 PELKSTLDKVV-TGNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQLY  148 (179)
Q Consensus        75 ~~~~~~l~~li-~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~Vf  148 (179)
                      ++.++.+.... ....++|+...    +||++|+++...|++.     ++.+..+|++.++++.    +..|...+|.++
T Consensus        15 ~~~~~~~~~~~~~~~~~vv~f~~----~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~----~~~~v~~~Pt~~   86 (118)
T 2vm1_A           15 QEFDTHMANGKDTGKLVIIDFTA----SWCGPCRVIAPVFAEYAKKFPGAIFLKVDVDELKDVA----EAYNVEAMPTFL   86 (118)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEEEC----TTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHH----HHTTCCSBSEEE
T ss_pred             HHHHHHHHhcccCCCEEEEEEEC----CCCHhHHHHhHHHHHHHHHCCCcEEEEEEcccCHHHH----HHcCCCcCcEEE
Confidence            34555555443 23445554444    6999999999888654     5778888988776543    344677899886


Q ss_pred             e--CCEEEe
Q 030327          149 I--EGEFFG  155 (179)
Q Consensus       149 I--dG~~IG  155 (179)
                      +  +|+.++
T Consensus        87 ~~~~g~~~~   95 (118)
T 2vm1_A           87 FIKDGEKVD   95 (118)
T ss_dssp             EEETTEEEE
T ss_pred             EEeCCeEEE
Confidence            6  898754

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=98.23  E-value=6.7e-06  Score=57.24  Aligned_cols=67  Identities=22%  Similarity=0.465  Sum_probs=46.5

Q ss_pred             HHhhh--cCCcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--C
Q 030327           81 LDKVV--TGNKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--E  150 (179)
Q Consensus        81 l~~li--~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--d  150 (179)
                      +++.+  ....++|+...    +||++|+.+...|++.      ++.+..+|+++++++.    +..|...+|.+++  +
T Consensus        14 ~~~~~~~~~~~vlv~f~a----~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~----~~~~v~~~Pt~~~~~~   85 (111)
T 3gnj_A           14 FEQLIYDEGKACLVMFSR----KNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKTLF----QRFSLKGVPQILYFKD   85 (111)
T ss_dssp             HHHHHTTSCCCEEEEEEC----SSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHH----HHTTCCSSCEEEEEET
T ss_pred             HHHHHHhcCCEEEEEEeC----CCChhHHHHHHHHHHHHHHcCCceEEEEEECCcChhHH----HhcCCCcCCEEEEEEC
Confidence            44444  33445555544    6999999999888654      3778889998887654    3457778998755  9


Q ss_pred             CEEEe
Q 030327          151 GEFFG  155 (179)
Q Consensus       151 G~~IG  155 (179)
                      |+.++
T Consensus        86 g~~~~   90 (111)
T 3gnj_A           86 GEYKG   90 (111)
T ss_dssp             TEEEE
T ss_pred             CEEEE
Confidence            98764

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=98.22  E-value=7.9e-06  Score=58.02  Aligned_cols=72  Identities=25%  Similarity=0.354  Sum_probs=49.2

Q ss_pred             HHHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee-
Q 030327           75 PELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL----NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI-  149 (179)
Q Consensus        75 ~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI-  149 (179)
                      ++.++.+.+. ....++|+..+    +||++|+++...|++.    ++.+..+|+++++++.    +..|...+|.+++ 
T Consensus        22 ~~~~~~l~~~-~~~~~vv~f~a----~wC~~C~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~----~~~~v~~~Pt~~~~   92 (117)
T 2xc2_A           22 GDLESLLEQH-KNKLVVVDFFA----TWCGPCKTIAPLFKELSEKYDAIFVKVDVDKLEETA----RKYNISAMPTFIAI   92 (117)
T ss_dssp             THHHHHHHHT-TTSCEEEEEEC----TTCHHHHHHHHHHHHHHTTSSSEEEEEETTTSHHHH----HHTTCCSSSEEEEE
T ss_pred             HHHHHHHHhC-CCCEEEEEEEC----CCCHhHHHHhHHHHHHHHHcCcEEEEEECCccHHHH----HHcCCCccceEEEE
Confidence            4455555542 33445544443    6999999999988765    5678888888776543    3457778999876 


Q ss_pred             -CCEEEe
Q 030327          150 -EGEFFG  155 (179)
Q Consensus       150 -dG~~IG  155 (179)
                       +|+.++
T Consensus        93 ~~G~~~~   99 (117)
T 2xc2_A           93 KNGEKVG   99 (117)
T ss_dssp             ETTEEEE
T ss_pred             eCCcEEE
Confidence             898764

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=98.22  E-value=8.7e-06  Score=56.77  Aligned_cols=61  Identities=13%  Similarity=0.176  Sum_probs=44.1

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCEEEe
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEFFG  155 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~~IG  155 (179)
                      ...++++...    +||++|+++...|++.     ++.+..+|+++++++.    +..|...+|.+  |.+|+.++
T Consensus        21 ~~~v~v~f~a----~wC~~C~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~----~~~~v~~~Pt~~~~~~G~~~~   88 (107)
T 1gh2_A           21 SRLAVVKFTM----RGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTA----ATNNISATPTFQFFRNKVRID   88 (107)
T ss_dssp             TSCEEEEEEC----SSCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHH----HHTTCCSSSEEEEEETTEEEE
T ss_pred             CCEEEEEEEC----CCChhhHHHHHHHHHHHHHCCCcEEEEEECccCHHHH----HhcCCCcccEEEEEECCeEEE
Confidence            3445555544    6999999999888764     5788899998886643    34577788977  44888665

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=98.21  E-value=9.9e-06  Score=57.68  Aligned_cols=72  Identities=19%  Similarity=0.309  Sum_probs=48.5

Q ss_pred             HHHHHHHhhh-cCCcEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee
Q 030327           76 ELKSTLDKVV-TGNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI  149 (179)
Q Consensus        76 ~~~~~l~~li-~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI  149 (179)
                      +.+..+.+.. ....++|+...    +||++|++....|++.     ++.+..+|+++++++.+    ..|...+|.+++
T Consensus        22 ~~~~~~~~~~~~~~~~vv~f~~----~~C~~C~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~----~~~v~~~Pt~~~   93 (122)
T 2vlu_A           22 QWTMQIEEANTAKKLVVIDFTA----SWCGPCRIMAPVFADLAKKFPNAVFLKVDVDELKPIAE----QFSVEAMPTFLF   93 (122)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEEC----TTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHH----HTTCCSSSEEEE
T ss_pred             HHHHHHHHhhccCCEEEEEEEC----CCCHHHHHHHHHHHHHHHHCCCcEEEEEECCCCHHHHH----HcCCCcccEEEE
Confidence            3444444432 23445555544    6999999999888653     47788889988776543    456778898866


Q ss_pred             --CCEEEe
Q 030327          150 --EGEFFG  155 (179)
Q Consensus       150 --dG~~IG  155 (179)
                        +|+.++
T Consensus        94 ~~~G~~~~  101 (122)
T 2vlu_A           94 MKEGDVKD  101 (122)
T ss_dssp             EETTEEEE
T ss_pred             EeCCEEEE
Confidence              898764

>3ir4_A Glutaredoxin 2; glutathione, IDP00895, structural genomics, for structural genomics of infectious diseases, csgid, oxidoreductase; HET: MSE GSH; 1.20A {Salmonella enterica subsp} PDB: 1g7o_A

Probab=98.20  E-value=2.9e-06  Score=66.72  Aligned_cols=72  Identities=17%  Similarity=0.188  Sum_probs=59.2

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEe-eCCEEEeecHHHHHHHHc
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLY-IEGEFFGGCDITVEAYKN  166 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~Vf-IdG~~IGG~del~~l~~~  166 (179)
                      +.+.||..     +.||+|.+++-+|...|++|+.++|+..+..  ...+.++..++|++. .||..+.+...+.++.++
T Consensus         2 ~~~~Ly~~-----~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~--~~~~~~p~~~vP~l~~~~g~~l~eS~aI~~yL~~   74 (218)
T 3ir4_A            2 NAMKLYIY-----DHCPFCVKARMIFGLKNIPVELNVLQNDDEA--TPTRMIGQKMVPILQKDDSRYLPESMDIVHYVDN   74 (218)
T ss_dssp             CCCEEEEC-----TTCHHHHHHHHHHHHHTCCCEEEECCTTCCH--HHHHHHSSSCSCEEECTTSCEEECHHHHHHHHHH
T ss_pred             CeEEEEcC-----CCCchHHHHHHHHHHcCCceEEEECCCcchh--hhhhcCCCceeeeEEEeCCeEeeCHHHHHHHHHH
Confidence            46789999     5999999999999999999999988643221  124667899999999 899999999888887654

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=98.20  E-value=1.1e-05  Score=55.32  Aligned_cols=61  Identities=20%  Similarity=0.333  Sum_probs=44.5

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CCEEEe
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEFFG  155 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG~~IG  155 (179)
                      ...++++..+    +||++|+.+...|++.     ++.+..+|+++++++.+    ..|...+|.+++  +|+.+.
T Consensus        19 ~~~~~v~f~~----~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~----~~~v~~~Pt~~~~~~g~~~~   86 (104)
T 2vim_A           19 GRLIVVDFFA----QWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQNEEAAA----KYSVTAMPTFVFIKDGKEVD   86 (104)
T ss_dssp             TSCEEEEEEC----TTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHH----HTTCCSSSEEEEEETTEEEE
T ss_pred             CCeEEEEEEC----CCCHHHHHhhHHHHHHHHHCCCCEEEEEeccCCHHHHH----HcCCccccEEEEEeCCcEEE
Confidence            4455554444    6999999999888664     67888999988776543    346678898866  888764

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=98.18  E-value=1e-05  Score=60.69  Aligned_cols=61  Identities=10%  Similarity=0.152  Sum_probs=45.6

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CCEEEe
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEFFG  155 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG~~IG  155 (179)
                      ...++|+...    +||++|+++...|.++     ++.+..+|+++++++.    +..|...+|.+++  +|+.++
T Consensus        32 ~~~vvv~F~a----~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~~~~~~l~----~~~~v~~~Pt~~~~~~G~~~~   99 (153)
T 2wz9_A           32 KSLLVVHFWA----PWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVS----EKYEISSVPTFLFFKNSQKID   99 (153)
T ss_dssp             TSCEEEEEEC----TTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHH----HHTTCCSSSEEEEEETTEEEE
T ss_pred             CCeEEEEEEC----CCCHhHHHHHHHHHHHHHHcCCeEEEEEECCCCHHHH----HHcCCCCCCEEEEEECCEEEE
Confidence            3445555554    6999999999888765     6889999998887654    3457778999877  998764

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=98.18  E-value=1e-05  Score=58.22  Aligned_cols=67  Identities=18%  Similarity=0.345  Sum_probs=46.6

Q ss_pred             HHhhhcCC-cEEEEEeeCCCCCCCchHHHHHHHHHhc-------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--C
Q 030327           81 LDKVVTGN-KVVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--E  150 (179)
Q Consensus        81 l~~li~~~-~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--d  150 (179)
                      ++++++.+ .++|+..+    +||++|+.+...|++.       ++.+..+|+++++++.+.    .|...+|.+++  +
T Consensus        26 f~~~l~~~k~vvv~f~a----~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~~~~~~~~----~~v~~~Pt~~~~~~   97 (121)
T 2j23_A           26 FKQVTGGDKVVVIDFWA----TWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQE----VGIRAMPTFVFFKN   97 (121)
T ss_dssp             HHHHHSSSSCEEEEEEC----TTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTTCHHHHHH----HTCCSSSEEEEEET
T ss_pred             HHHHHcCCCEEEEEEEC----CCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcCCHHHHHH----cCCCcccEEEEEEC
Confidence            44444444 45555554    6999999999988763       277888899888765443    36667888765  8


Q ss_pred             CEEEe
Q 030327          151 GEFFG  155 (179)
Q Consensus       151 G~~IG  155 (179)
                      |+.+.
T Consensus        98 G~~~~  102 (121)
T 2j23_A           98 GQKID  102 (121)
T ss_dssp             TEEEE
T ss_pred             CeEEe
Confidence            88754

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=98.12  E-value=2.7e-05  Score=53.48  Aligned_cols=67  Identities=18%  Similarity=0.280  Sum_probs=47.8

Q ss_pred             HHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CCE
Q 030327           81 LDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGE  152 (179)
Q Consensus        81 l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG~  152 (179)
                      +++.+....++|+..+    +||++|+.....|++.      ++.+..+|+++++++.+    ..+...+|.+++  +|+
T Consensus        13 ~~~~~~~~~~lv~f~~----~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~v~~~Pt~~~~~~G~   84 (106)
T 3die_A           13 FDSKVESGVQLVDFWA----TACGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAA----KYEVMSIPTLIVFKDGQ   84 (106)
T ss_dssp             HHHHSCSSEEEEEEEC----SBCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHH----HTTCCSBSEEEEEETTE
T ss_pred             HHHHhcCCcEEEEEEC----CCCHHHHHHhHHHHHHHHHhcCCcEEEEEECCcCHHHHH----hCCCcccCEEEEEeCCe
Confidence            3334456666666665    7999999999888654      26788889988876543    346778998866  897


Q ss_pred             EEe
Q 030327          153 FFG  155 (179)
Q Consensus       153 ~IG  155 (179)
                      .++
T Consensus        85 ~~~   87 (106)
T 3die_A           85 PVD   87 (106)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            665

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=98.12  E-value=1.1e-05  Score=57.73  Aligned_cols=59  Identities=22%  Similarity=0.313  Sum_probs=42.4

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCEEEe
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEFFG  155 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~~IG  155 (179)
                      .|+|+...    +||++|+.+...|++.     ++.+..+|+++++++.+    ..|-..+|.+  |.||+.++
T Consensus        22 ~vvv~F~a----~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~d~~~~l~~----~~~V~~~PT~~~~~~G~~v~   87 (105)
T 3zzx_A           22 LVVIDFYA----TWCGPCKMIAPKLEELSQSMSDVVFLKVDVDECEDIAQ----DNQIACMPTFLFMKNGQKLD   87 (105)
T ss_dssp             EEEEEEEC----TTCHHHHHHHHHHHHHHHHCTTEEEEEEETTTCHHHHH----HTTCCBSSEEEEEETTEEEE
T ss_pred             EEEEEEEC----CCCCCccCCCcchhhhhhccCCeEEEEEecccCHHHHH----HcCCCeecEEEEEECCEEEE
Confidence            45554443    6999999999988664     45678889988877544    4466778876  56898764

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=98.10  E-value=3.9e-05  Score=52.14  Aligned_cols=61  Identities=18%  Similarity=0.214  Sum_probs=44.8

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CCEEEe
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEFFG  155 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG~~IG  155 (179)
                      ...++++..+    +||++|+.+...|++.     ++.+..+|+++++++.    +..|...+|.+++  +|+.++
T Consensus        16 ~~~~~v~f~~----~~C~~C~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~v~~~Pt~~~~~~g~~~~   83 (104)
T 2e0q_A           16 HEIAVVDFWA----EWCAPCLILAPIIEELAEDYPQVGFGKLNSDENPDIA----ARYGVMSLPTVIFFKDGEPVD   83 (104)
T ss_dssp             SSEEEEEEEC----TTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHH----HHTTCCSSCEEEEEETTEEEE
T ss_pred             CCcEEEEEEC----CCChhHHHHhHHHHHHHHHcCCceEEEEECCCCHHHH----HhCCccccCEEEEEECCeEhh
Confidence            3445555554    6999999999888653     5788889998887643    3446778999987  998764

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=98.09  E-value=3.1e-05  Score=55.05  Aligned_cols=64  Identities=17%  Similarity=0.244  Sum_probs=44.9

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHh----cCCCeEEEEcCCCH--HHHHHHHHhcCCCCcceEee--CCEEEe
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKS----LNAPFETVNILENE--MLRQGLKEYSSWPTFPQLYI--EGEFFG  155 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~----~gv~y~~vdV~~d~--~~~~~L~~~sg~~tvP~VfI--dG~~IG  155 (179)
                      ..++|+...    +||++|++....|.+    ++.++..+|++...  +....+.+..|...+|.+++  +|+.+.
T Consensus        30 ~~~~v~f~a----~wC~~C~~~~p~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~Pt~~~~~~G~~~~  101 (118)
T 1zma_A           30 ETATFFIGR----KTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPGFVHITDGQINV  101 (118)
T ss_dssp             CCEEEEEEC----TTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSSCEEEEEETTEEEE
T ss_pred             CeEEEEEEC----CCCccHHHHHHHHHHHHHhcCCeEEEEECCCcCcHHHHHHHHHHcCCCCCCeEEEEECCEEEE
Confidence            445555554    799999998777654    46788889887543  33445666678889999844  887664

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=98.09  E-value=1.1e-05  Score=56.07  Aligned_cols=62  Identities=16%  Similarity=0.267  Sum_probs=42.7

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc---------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CCEEEe
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL---------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEFFG  155 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~---------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG~~IG  155 (179)
                      ...++|+...    +||++|++....|.+.         ++.+..+|+++++++.    +..|...+|.+++  +|+.+.
T Consensus        21 ~~~~lv~f~~----~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~----~~~~v~~~Pt~~~~~~g~~~~   92 (111)
T 3uvt_A           21 EGITFIKFYA----PWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNIC----SKYSVRGYPTLLLFRGGKKVS   92 (111)
T ss_dssp             SSEEEEEEEC----SSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCHHHH----HHTTCCSSSEEEEEETTEEEE
T ss_pred             CCcEEEEEEC----CCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccHhHH----HhcCCCcccEEEEEeCCcEEE
Confidence            4555555554    6999999999888654         3446677887776643    3456778998765  887664


Q ss_pred             e
Q 030327          156 G  156 (179)
Q Consensus       156 G  156 (179)
                      .
T Consensus        93 ~   93 (111)
T 3uvt_A           93 E   93 (111)
T ss_dssp             E
T ss_pred             e
Confidence            3

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=98.09  E-value=1.8e-05  Score=57.87  Aligned_cols=61  Identities=18%  Similarity=0.335  Sum_probs=45.2

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CCEEEe
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEFFG  155 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG~~IG  155 (179)
                      ...++|+..+    +||++|+++...|.+.     ++.+..+|+++++++.+    ..+...+|.+++  +|+.++
T Consensus        37 ~k~vvv~F~a----~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~----~~~v~~~Pt~~i~~~G~~~~  104 (125)
T 1r26_A           37 DILTVAWFTA----VWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSEIVS----KCRVLQLPTFIIARSGKMLG  104 (125)
T ss_dssp             SSCEEEEEEC----TTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHHHHH----HTTCCSSSEEEEEETTEEEE
T ss_pred             CCEEEEEEEC----CcCHhHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHH----HcCCCcccEEEEEeCCeEEE
Confidence            3445555554    6999999999888663     68889999988876543    347778999877  898754

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=98.09  E-value=2.2e-05  Score=56.06  Aligned_cols=71  Identities=21%  Similarity=0.260  Sum_probs=46.4

Q ss_pred             HHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcC-CCHHHHHHHHHhcCCCCcceEee
Q 030327           76 ELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNIL-ENEMLRQGLKEYSSWPTFPQLYI  149 (179)
Q Consensus        76 ~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~-~d~~~~~~L~~~sg~~tvP~VfI  149 (179)
                      +..+.+.+. ....++|+..+    +||++|++....|++.     ++.+..+|++ ++.++.    +..|...+|.+++
T Consensus        27 ~~~~~~~~~-~~~~~vv~f~a----~wC~~C~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~----~~~~v~~~Pt~~~   97 (124)
T 1faa_A           27 TFWPIVKAA-GDKPVVLDMFT----QWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLA----KELGIRVVPTFKI   97 (124)
T ss_dssp             THHHHHHHT-TTSCEEEEEEC----TTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTHHHH----HHHCCSSSSEEEE
T ss_pred             hHHHHHHhc-CCCEEEEEEEC----CcCHhHHHHhHHHHHHHHHCCCCEEEEEecCcchHHHH----HHcCCCeeeEEEE
Confidence            344444432 33445544444    6999999999888663     5778888886 455443    3447778998766


Q ss_pred             --CCEEEe
Q 030327          150 --EGEFFG  155 (179)
Q Consensus       150 --dG~~IG  155 (179)
                        +|+.++
T Consensus        98 ~~~G~~~~  105 (124)
T 1faa_A           98 LKENSVVG  105 (124)
T ss_dssp             EETTEEEE
T ss_pred             EeCCcEEE
Confidence              898764

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=98.09  E-value=2e-05  Score=56.39  Aligned_cols=60  Identities=17%  Similarity=0.242  Sum_probs=43.2

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CCEEEe
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEFFG  155 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG~~IG  155 (179)
                      ..++|+..+    +||++|+++...|.+.      ++.+..+|+++++++.    +..|...+|.+++  +|+.+.
T Consensus        32 k~vlv~f~a----~~C~~C~~~~~~l~~~~~~~~~~v~~~~vd~d~~~~l~----~~~~v~~~Pt~~~~~~G~~~~   99 (119)
T 1w4v_A           32 TPVVVDFHA----QWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLA----IEYEVSAVPTVLAMKNGDVVD   99 (119)
T ss_dssp             SCEEEEEEC----TTCHHHHHHHHHHHHHHHHTTTSSEEEEEETTTTHHHH----HHTTCCSSSEEEEEETTEEEE
T ss_pred             CcEEEEEEC----CCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCCHHHH----HHcCCCcccEEEEEeCCcEEE
Confidence            345555554    6999999998887652      4678888888876543    3457778999877  998654

>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}

Probab=98.09  E-value=6.8e-07  Score=66.38  Aligned_cols=36  Identities=22%  Similarity=0.491  Sum_probs=32.7

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCH
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENE  129 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~  129 (179)
                      .|++|+.     |+|++|++++++|++.|++|+++|+.+++
T Consensus         5 ~i~iY~~-----p~C~~c~ka~~~L~~~gi~~~~~di~~~~   40 (119)
T 3f0i_A            5 SVVIYHN-----PKCSKSRETLALLENQGIAPQVIKYLETS   40 (119)
T ss_dssp             CCEEECC-----TTCHHHHHHHHHHHHTTCCCEEECHHHHC
T ss_pred             EEEEEEC-----CCChHHHHHHHHHHHcCCceEEEEeccCc
Confidence            4899999     69999999999999999999999997643

>3fy7_A Chloride intracellular channel protein 3; GST, glutathione, CLIC, chloride channel, ION transport, ionic channel, nucleus, transport, gated channel; 1.95A {Homo sapiens} PDB: 3kjy_A

Probab=98.07  E-value=1.3e-05  Score=64.88  Aligned_cols=80  Identities=15%  Similarity=0.235  Sum_probs=54.5

Q ss_pred             cCCcEEEEEeeCC---CCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHH
Q 030327           86 TGNKVVLFMKGTK---DFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVE  162 (179)
Q Consensus        86 ~~~~Vvlysk~t~---~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~  162 (179)
                      ....|.||.|...   ..+.||||.+++-+|...|++|+.+.|+-. ...+++.+.+...++|++..||..+.....+.+
T Consensus        22 ~~~~i~l~~ka~~~~~s~~~sP~~~rv~~~L~~~gi~ye~~~v~~~-~~~~~~~~~nP~g~VPvL~~dg~~l~ES~aI~~  100 (250)
T 3fy7_A           22 AETKLQLFVKASEDGESVGHCPSCQRLFMVLLLKGVPFTLTTVDTR-RSPDVLKDFAPGSQLPILLYDSDAKTDTLQIED  100 (250)
T ss_dssp             ---CEEEEEEBCTTSSSBCSCHHHHHHHHHHHHHTCCCEEEEEC---------------CCSCEEEETTEEECCHHHHHH
T ss_pred             cCCCceEEEEeCCCCCCCCCChHHHHHHHHHHHcCCccEEEECCCc-cChHHHHhhCCCCCCCEEEECCEEecCHHHHHH
Confidence            3457999999632   236799999999999999999999888643 233466677778899999999999999888887


Q ss_pred             HHHc
Q 030327          163 AYKN  166 (179)
Q Consensus       163 l~~~  166 (179)
                      +.++
T Consensus       101 YL~~  104 (250)
T 3fy7_A          101 FLEE  104 (250)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7543

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=98.06  E-value=1.3e-05  Score=56.28  Aligned_cols=61  Identities=26%  Similarity=0.318  Sum_probs=42.3

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcC-CCHHHHHHHHHhcCCCCcceEee--CCEEEe
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNIL-ENEMLRQGLKEYSSWPTFPQLYI--EGEFFG  155 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~-~d~~~~~~L~~~sg~~tvP~VfI--dG~~IG  155 (179)
                      ...++|+...    +||++|++....|++.     ++.+..+|++ ++.++.    +..|...+|.+++  +|+.++
T Consensus        24 ~~~vlv~f~a----~wC~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~----~~~~v~~~Pt~~~~~~G~~~~   92 (111)
T 2pu9_C           24 DKPVVLDMFT----QWCGPSKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLA----KELGIRVVPTFKILKENSVVG   92 (111)
T ss_dssp             TSCEEEEEEC----TTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTHHHH----HHHCCSBSSEEEEESSSSEEE
T ss_pred             CCEEEEEEEC----CcCHhHHHHCHHHHHHHHHCCCeEEEEEecCcchHHHH----HHcCCCeeeEEEEEeCCcEEE
Confidence            3445555554    6999999999888663     5778888887 455543    3346778998766  787653

>2r4v_A XAP121, chloride intracellular channel protein 2; chloride intracellular channels, CLIC2, pore-forming protein ryanodine receptor, chloride channel; HET: GSH; 1.85A {Homo sapiens} PDB: 2r5g_A 2per_A*

Probab=98.04  E-value=1.2e-05  Score=64.98  Aligned_cols=79  Identities=18%  Similarity=0.193  Sum_probs=55.6

Q ss_pred             CCcEEEEEeeCC---CCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHH
Q 030327           87 GNKVVLFMKGTK---DFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEA  163 (179)
Q Consensus        87 ~~~Vvlysk~t~---~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l  163 (179)
                      ...+++|.+...   ..+.||+|.+++-+|...|++|+.+.|+.. ...+++.+.+...++|++..||..|.....+.++
T Consensus        11 ~~~i~ly~~~~~~~~~~~~sp~~~rv~~~L~~~gi~ye~~~v~~~-~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~Y   89 (247)
T 2r4v_A           11 DPEIELFVKAGSDGESIGNCPFCQRLFMILWLKGVKFNVTTVDMT-RKPEELKDLAPGTNPPFLVYNKELKTDFIKIEEF   89 (247)
T ss_dssp             CCCEEEEEEBCTTSSSBCSCHHHHHHHHHHHHHTCCCEEEEECCC-----------CCSSSCEEEETTEEECCHHHHHHH
T ss_pred             CCCEEEEEecCcccccCCCChhHHHHHHHHHHcCCCcEEEEcCcc-cchHHHHHhCCCCCCCEEEECCEeccCHHHHHHH
Confidence            456999943211   125899999999999999999999988654 2234566677788999999999999998888877


Q ss_pred             HHc
Q 030327          164 YKN  166 (179)
Q Consensus       164 ~~~  166 (179)
                      .++
T Consensus        90 L~~   92 (247)
T 2r4v_A           90 LEQ   92 (247)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=98.03  E-value=5.5e-05  Score=51.92  Aligned_cols=61  Identities=13%  Similarity=0.170  Sum_probs=43.9

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CCEEEe
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEFFG  155 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG~~IG  155 (179)
                      ...++|+..+    +||++|+.....|.+.      ++.+..+|++.++++.    +..|...+|.+++  +|+.+.
T Consensus        18 ~~~~lv~f~~----~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~v~~~Pt~~~~~~g~~~~   86 (109)
T 2yzu_A           18 HPLVLVDFWA----EWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDENPKTA----MRYRVMSIPTVILFKDGQPVE   86 (109)
T ss_dssp             CSEEEEEEEC----TTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHHHH----HHTTCCSSSEEEEEETTEEEE
T ss_pred             CCeEEEEEEC----CCCHHHHHhhHHHHHHHHHhhCceEEEEEECCCCHhHH----HhCCCCcCCEEEEEeCCcEee
Confidence            3445555554    6999999999887654      4678888888877543    3457778999877  998654

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=98.02  E-value=5.5e-05  Score=52.66  Aligned_cols=61  Identities=11%  Similarity=0.181  Sum_probs=44.3

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CCEEEe
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEFFG  155 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG~~IG  155 (179)
                      ...++|+..+    +||++|++....|++.      ++.+..+|++.++++.    +..|...+|.+++  +|+.++
T Consensus        25 ~~~~lv~f~~----~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~----~~~~v~~~Pt~~~~~~G~~~~   93 (115)
T 1thx_A           25 EQPVLVYFWA----SWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTV----KKYKVEGVPALRLVKGEQILD   93 (115)
T ss_dssp             SSCEEEEEEC----TTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHHHH----HHTTCCSSSEEEEEETTEEEE
T ss_pred             CceEEEEEEC----CCCHHHHHhHHHHHHHHHHhCCcEEEEEEEcCCCHHHH----HHcCCCceeEEEEEcCCEEEE
Confidence            3445555554    6999999999888653      3778889998887543    3457778999977  998764

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=98.02  E-value=2.9e-05  Score=56.62  Aligned_cols=73  Identities=15%  Similarity=0.239  Sum_probs=49.2

Q ss_pred             HHHHHHHHhhh-cCCcEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEe
Q 030327           75 PELKSTLDKVV-TGNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQLY  148 (179)
Q Consensus        75 ~~~~~~l~~li-~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~Vf  148 (179)
                      ++..+.+.... ....++|+...    +||++|++....|++.     ++.+..+|+++++++.    +..|...+|.++
T Consensus        33 ~~~~~~~~~~~~~~k~vvv~f~a----~wC~~C~~~~~~l~~l~~~~~~v~~~~v~~~~~~~~~----~~~~v~~~Pt~~  104 (139)
T 3d22_A           33 ERWDQKLSEASRDGKIVLANFSA----RWCGPSRQIAPYYIELSENYPSLMFLVIDVDELSDFS----ASWEIKATPTFF  104 (139)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEEEC----TTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHH----HHTTCCEESEEE
T ss_pred             HHHHHHHHHHhhcCCEEEEEEEC----CCCHHHHHHHHHHHHHHHHCCCCEEEEEeCcccHHHH----HHcCCCcccEEE
Confidence            34445454432 34556555554    6999999999888664     5788899998876544    345677888764


Q ss_pred             e--CCEEEe
Q 030327          149 I--EGEFFG  155 (179)
Q Consensus       149 I--dG~~IG  155 (179)
                      +  +|+.++
T Consensus       105 ~~~~G~~~~  113 (139)
T 3d22_A          105 FLRDGQQVD  113 (139)
T ss_dssp             EEETTEEEE
T ss_pred             EEcCCeEEE
Confidence            4  887654

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=98.00  E-value=5.3e-05  Score=51.98  Aligned_cols=71  Identities=24%  Similarity=0.287  Sum_probs=46.8

Q ss_pred             HHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee
Q 030327           76 ELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI  149 (179)
Q Consensus        76 ~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI  149 (179)
                      +.++.+++. +...++++..+    +||++|++....|++.      ++.+..+|+++++++.    +..|...+|.+++
T Consensus        10 ~~~~~l~~~-~~~~~vv~f~~----~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~v~~~Pt~~~   80 (106)
T 1xwb_A           10 DLDGQLTKA-SGKLVVLDFFA----TWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIA----MEYNISSMPTFVF   80 (106)
T ss_dssp             HHHHHHHHH-TTSEEEEEEEC----TTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHH----HHTTCCSSSEEEE
T ss_pred             HHHHHHHhc-CCCEEEEEEEC----CcCHHHHHhhHHHHHHHHHhCCCeEEEEEeccchHHHH----HHcCCCcccEEEE
Confidence            344444432 34445555554    6999999998887652      4667788888776543    3446778898866


Q ss_pred             --CCEEEe
Q 030327          150 --EGEFFG  155 (179)
Q Consensus       150 --dG~~IG  155 (179)
                        +|+.+.
T Consensus        81 ~~~G~~~~   88 (106)
T 1xwb_A           81 LKNGVKVE   88 (106)
T ss_dssp             EETTEEEE
T ss_pred             EcCCcEEE
Confidence              898765

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=97.99  E-value=3.7e-05  Score=52.90  Aligned_cols=61  Identities=18%  Similarity=0.263  Sum_probs=44.0

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CCEEEe
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEFFG  155 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG~~IG  155 (179)
                      ...++|+..+    +||++|+.+...|.+.      ++.+..+|+++++++.    +..|...+|.+++  +|+.++
T Consensus        20 ~~~~lv~f~~----~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~v~~~Pt~~~~~~G~~~~   88 (107)
T 2i4a_A           20 SGLVLVDFWA----EWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETP----NAYQVRSIPTLMLVRDGKVID   88 (107)
T ss_dssp             SSEEEEEEEC----TTCHHHHHHHHHHHHHHHHHTTSEEEEEEETTTCCHHH----HHTTCCSSSEEEEEETTEEEE
T ss_pred             CCEEEEEEEC----CCChhHHHHhHHHHHHHHHhCCcEEEEEEECCCCHHHH----HhcCCCccCEEEEEeCCEEEE
Confidence            3445555554    7999999999888653      4678888888776543    3457778999877  998764

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=97.98  E-value=2.3e-05  Score=54.76  Aligned_cols=59  Identities=20%  Similarity=0.241  Sum_probs=42.1

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CCEEEe
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEFFG  155 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG~~IG  155 (179)
                      .++|+..+    +||++|++....|.+.      ++.+..+|+++++++.+    ..|...+|.+++  +|+.+.
T Consensus        25 ~~vv~f~~----~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~v~~~Pt~~~~~~G~~~~   91 (112)
T 1t00_A           25 PVLVDFWA----AWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAA----KYGVMSIPTLNVYQGGEVAK   91 (112)
T ss_dssp             CEEEEEEC----TTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHH----HTTCCSSSEEEEEETTEEEE
T ss_pred             eEEEEEEC----CCCHhHHhcCHHHHHHHHHhcCCeEEEEEEcCCCHHHHH----hCCCCcccEEEEEeCCEEEE
Confidence            45555544    6999999998877652      36788888888776543    447778998866  887653

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=97.97  E-value=3.2e-06  Score=66.29  Aligned_cols=58  Identities=9%  Similarity=-0.030  Sum_probs=44.0

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCEEE
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEFF  154 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~~I  154 (179)
                      .|+|-...    +||+.|+.+..+|+++      .+.|..+|||+++++    .+..+-..+|++  |.||+++
T Consensus        43 ~VVVdF~A----~WCgPCk~m~PvleelA~e~~~~v~f~kVDVDe~~e~----a~~y~V~siPT~~fFk~G~~v  108 (160)
T 2av4_A           43 LVCIRFGH----DYDPDCMKMDELLYKVADDIKNFCVIYLVDITEVPDF----NTMYELYDPVSVMFFYRNKHM  108 (160)
T ss_dssp             EEEEEEEC----TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTT----TTTTTCCSSEEEEEEETTEEE
T ss_pred             EEEEEEEC----CCChhHHHHHHHHHHHHHHccCCcEEEEEECCCCHHH----HHHcCCCCCCEEEEEECCEEE
Confidence            45444443    6999999999999664      267889999988775    344566789988  7899997

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=97.97  E-value=3.4e-05  Score=53.71  Aligned_cols=67  Identities=15%  Similarity=0.213  Sum_probs=41.2

Q ss_pred             HHhhhcC-CcEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEe--eCCE
Q 030327           81 LDKVVTG-NKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQLY--IEGE  152 (179)
Q Consensus        81 l~~li~~-~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~Vf--IdG~  152 (179)
                      ++++++. ..++|+...    +||++|+.+...|++.     ++.+..+|+++++++.+.    .|...+|.++  -+|+
T Consensus        11 ~~~~~~~~~~vlv~f~a----~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~~~~~~l~~~----~~v~~~Pt~~~~~~G~   82 (105)
T 4euy_A           11 LATYIEEQQLVLLFIKT----ENCGVCDVMLRKVNYVLENYNYVEKIEILLQDMQEIAGR----YAVFTGPTVLLFYNGK   82 (105)
T ss_dssp             CSSSTTCSSEEEEEEEE----SSCHHHHHHHHHHHHHHHTCTTEEEEEEEECCC-------------CCCCEEEEEETTE
T ss_pred             HHHHHhcCCCEEEEEeC----CCCcchHHHHHHHHHHHHHcCCceEEEEECCCCHHHHHh----cCCCCCCEEEEEeCCe
Confidence            3444433 445555554    6999999999888764     566888899888865444    3556788864  4898


Q ss_pred             EEe
Q 030327          153 FFG  155 (179)
Q Consensus       153 ~IG  155 (179)
                      .+.
T Consensus        83 ~~~   85 (105)
T 4euy_A           83 EIL   85 (105)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            873

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=97.96  E-value=4.5e-05  Score=56.03  Aligned_cols=56  Identities=11%  Similarity=0.209  Sum_probs=41.1

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcC----CCeEEEEcCCCHHHHHHHHHhcCCCCcceEee----CCE
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLN----APFETVNILENEMLRQGLKEYSSWPTFPQLYI----EGE  152 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~g----v~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI----dG~  152 (179)
                      .++|+...    +||++|+++...|+++.    +.+..+|+++++++.    +..|...+|.+++    ||+
T Consensus        42 ~vvv~F~a----~wC~~C~~~~p~l~~l~~~~~v~~~~vd~~~~~~l~----~~~~v~~~Pt~~~~~~~~g~  105 (133)
T 3cxg_A           42 SIVIKFGA----VWCKPCNKIKEYFKNQLNYYYVTLVDIDVDIHPKLN----DQHNIKALPTFEFYFNLNNE  105 (133)
T ss_dssp             EEEEEEEC----TTCHHHHHTHHHHHGGGGTEECEEEEEETTTCHHHH----HHTTCCSSSEEEEEEEETTE
T ss_pred             EEEEEEEC----CCCHHHHHHHHHHHHHHHhcCEEEEEEeccchHHHH----HhcCCCCCCEEEEEEecCCC
Confidence            45555444    69999999999998764    567777887776543    3457788999855    898

>4hoj_A REGF protein; GST, glutathione S-transferase, enzyme function initiative, structural genomics, transferase; HET: GSH; 1.40A {Neisseria gonorrhoeae}

Probab=97.95  E-value=1.9e-05  Score=61.76  Aligned_cols=70  Identities=20%  Similarity=0.234  Sum_probs=57.4

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      +.||+.     +.||||++|+-+|.++|++|+.++|+-.. -.+++.+.+...++|.+..||..|.....+.++.+
T Consensus         4 m~LY~~-----~~sP~~~rvr~~L~e~gi~~e~~~v~~~~-~~~~~~~~nP~g~vPvL~~~~~~l~ES~aI~~yL~   73 (210)
T 4hoj_A            4 MTLYSG-----ITCPFSHRCRFVLYEKGMDFEIKDIDIYN-KPEDLAVMNPYNQVPVLVERDLVLHESNIINEYID   73 (210)
T ss_dssp             CEEEEC-----TTCHHHHHHHHHHHHHTCCCEEEECCTTS-CCHHHHHHCTTCCSCEEEETTEEEESHHHHHHHHH
T ss_pred             EEEecC-----CCChHHHHHHHHHHHcCCCCEEEEeCCCC-CCHHHHHHCCCCCCcEEEECCEEEeccHHHHHHHH
Confidence            568888     59999999999999999999999885321 12356777788899999999999998888877654

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=97.95  E-value=7.9e-05  Score=51.43  Aligned_cols=59  Identities=14%  Similarity=0.246  Sum_probs=42.1

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CCEEE
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEFF  154 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG~~I  154 (179)
                      ..++++..+    +||++|++....|++.      ++.+..+|+++++++.+.    .|...+|.+++  +|+.+
T Consensus        20 ~~~lv~f~~----~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~v~~~Pt~~~~~~G~~~   86 (107)
T 1dby_A           20 VPVLVDFWA----PWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASE----YGIRSIPTIMVFKGGKKC   86 (107)
T ss_dssp             SCEEEEEEC----TTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHH----HTCCSSCEEEEESSSSEE
T ss_pred             CcEEEEEEC----CCCHhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHH----CCCCcCCEEEEEeCCEEE
Confidence            345555554    6999999999888653      367888888888765443    46778998876  88764

>2cz2_A Maleylacetoacetate isomerase; structural genomics, GST, GSTZ1-1, NPPSFA, national project protein structural and functional analyses; HET: GSH; 1.40A {Mus musculus} PDB: 2cz3_A 1fw1_A*

Probab=97.94  E-value=3.1e-05  Score=61.04  Aligned_cols=75  Identities=17%  Similarity=0.148  Sum_probs=60.9

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCH----HHHHHHHHhcCCCCcceEeeCCEEEeecHHHHH
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENE----MLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVE  162 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~----~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~  162 (179)
                      ..+++||..     +.||+|.+++-+|...|++|+.+.|+-..    ....++.+.+...++|++..||..|.+...+.+
T Consensus        10 ~~~~~Ly~~-----~~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~e~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~   84 (223)
T 2cz2_A           10 AGKPILYSY-----FRSSCSWRVRIALALKGIDYEIVPINLIKDGGQQFTEEFQTLNPMKQVPALKIDGITIVQSLAIME   84 (223)
T ss_dssp             -CCCEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEECCSSGGGCGGGSHHHHHHCTTCCSCEEEETTEEEESHHHHHH
T ss_pred             cCceEEEec-----CCCChHHHHHHHHHhcCCCCeEEEeecccCchhhcCHHHhccCCCCCCCEEEECCEEEeeHHHHHH
Confidence            456899988     48999999999999999999999886432    234566677788899999999999999888877


Q ss_pred             HHHc
Q 030327          163 AYKN  166 (179)
Q Consensus       163 l~~~  166 (179)
                      +..+
T Consensus        85 yL~~   88 (223)
T 2cz2_A           85 YLEE   88 (223)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>3lyp_A Stringent starvation protein A; structural genomics, GST-superfamily, SSPA, stringent starva protein A homolog, PSI-2; 1.60A {Pseudomonas fluorescens} PDB: 3mdk_A

Probab=97.92  E-value=1.9e-05  Score=61.76  Aligned_cols=72  Identities=15%  Similarity=0.219  Sum_probs=58.4

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHc
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKN  166 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~  166 (179)
                      ++.||..     +.||+|.+++-+|...|++|+.+.|+-. ...+++.+.+...++|.+..||..+.+...+.++..+
T Consensus         8 ~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~-~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~~   79 (215)
T 3lyp_A            8 RLACYSD-----PADHYSHRVRIVLAEKGVSAEIISVEAG-RQPPKLIEVNPYGSLPTLVDRDLALWESTVVMEYLDE   79 (215)
T ss_dssp             CCEEEEC-----TTCHHHHHHHHHHHHHTCCCEEEECC----CCHHHHHHCTTCCSSEEECC-CEEESHHHHHHHHHH
T ss_pred             CeEEEeC-----CCCchHHHHHHHHHHCCCCcEEEecCcc-cccHHHHHHCCCCCcCeEEECCEEeecHHHHHHHHHH
Confidence            7899998     5999999999999999999999988643 2335667778889999999999999998888776543

>3bby_A Uncharacterized GST-like protein YFCF; NP_416804.1, glutathione S-transferase, N-terminal domain, S genomics; 1.85A {Escherichia coli}

Probab=97.92  E-value=3.7e-05  Score=60.01  Aligned_cols=75  Identities=15%  Similarity=0.154  Sum_probs=51.3

Q ss_pred             CCcEEEEEeeCCCCC--CCchHHHHHHHHHhcCCCeEEEEcCCC--HHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHH
Q 030327           87 GNKVVLFMKGTKDFP--QCGFSHTVVQILKSLNAPFETVNILEN--EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVE  162 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p--~Cp~C~~ak~lL~~~gv~y~~vdV~~d--~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~  162 (179)
                      +..++||..     +  .||+|.+++-+|...|++|+.+.|+-.  +....++.+.+...++|++..||..|.+...+.+
T Consensus         4 ~~~~~Ly~~-----~~~~s~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~   78 (215)
T 3bby_A            4 KPAITLWSD-----AHFFSPYVLSAWVALQEKGLSFHIKTIDLDSGEHLQPTWQGYGQTRRVPLLQIDDFELSESSAIAE   78 (215)
T ss_dssp             CCCEEEEEE-----TTSCCHHHHHHHHHHHHHTCCCEEEEEC------------------CCCEEEETTEEEESHHHHHH
T ss_pred             CCCEEEEec-----CCCCCcHHHHHHHHHHHcCCCCEEEEecCccccccCHHHHhhCCCCCCCEEEeCCeEeecHHHHHH
Confidence            356899998     4  799999999999999999999888642  2334566667777899999999999999888877


Q ss_pred             HHHc
Q 030327          163 AYKN  166 (179)
Q Consensus       163 l~~~  166 (179)
                      +..+
T Consensus        79 yL~~   82 (215)
T 3bby_A           79 YLED   82 (215)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>1k0m_A CLIC1, NCC27, chloride intracellular channel protein 1; glutathione-S-tranferase superfamily, chloride ION channel, metal transport; 1.40A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1k0n_A* 1k0o_A 1rk4_A 3uvh_A 3o3t_A 3p90_A 3qr6_A 3p8w_A 3tgz_A 3ma4_A 3swl_A

Probab=97.92  E-value=2.9e-05  Score=62.58  Aligned_cols=79  Identities=16%  Similarity=0.220  Sum_probs=60.6

Q ss_pred             CCcEEEEEeeC---CCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHH
Q 030327           87 GNKVVLFMKGT---KDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEA  163 (179)
Q Consensus        87 ~~~Vvlysk~t---~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l  163 (179)
                      +..+.+|.+..   .....||||.+++-+|..+|++|+.+.|+-. ...+++.+.+...++|++..||..|.....+.++
T Consensus         5 ~~~~~Ly~~~~~~g~~~~~sp~~~rv~~~L~~~gi~ye~~~v~~~-~~~~~~~~~nP~g~VPvL~~~g~~l~eS~aI~~y   83 (241)
T 1k0m_A            5 QPQVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTK-RRTETVQKLCPGGELPFLLYGTEVHTDTNKIEEF   83 (241)
T ss_dssp             -CCEEEEEEBCTTSSSBCSCHHHHHHHHHHHHHTCCCEEEEECTT-SCCHHHHHHCTTCCSSEEEETTEEEECHHHHHHH
T ss_pred             CCceEEEeecCCCCCCCCCCHHHHHHHHHHHHcCCccEEEEcCCc-ccHHHHHHhCCCCCCCEEEECCEEecCHHHHHHH
Confidence            45789999841   1123799999999999999999999888643 2224556677788999999999999998888877


Q ss_pred             HHc
Q 030327          164 YKN  166 (179)
Q Consensus       164 ~~~  166 (179)
                      .++
T Consensus        84 L~~   86 (241)
T 1k0m_A           84 LEA   86 (241)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=97.92  E-value=0.00017  Score=53.05  Aligned_cols=65  Identities=18%  Similarity=0.300  Sum_probs=45.7

Q ss_pred             hhhcCC-cEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CCEE
Q 030327           83 KVVTGN-KVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEF  153 (179)
Q Consensus        83 ~li~~~-~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG~~  153 (179)
                      .+++.+ .++|+..+    +||++|+++...|.++      ++.+..+|+++++++.+.    .+...+|.+++  +|+.
T Consensus        19 ~~~~~~~~vlv~F~a----~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~----~~v~~~Pt~~~~~~G~~   90 (140)
T 3hz4_A           19 QVEDSKKPVVVMFYS----PACPYCKAMEPYFEEYAKEYGSSAVFGRINIATNPWTAEK----YGVQGTPTFKFFCHGRP   90 (140)
T ss_dssp             HTTTCSSCEEEEEEC----TTCHHHHHHHHHHHHHHHHHTTTSEEEEEETTTCHHHHHH----HTCCEESEEEEEETTEE
T ss_pred             HHHhCCCcEEEEEEC----CCChhHHHHHHHHHHHHHHhCCceEEEEEECCcCHhHHHH----CCCCcCCEEEEEeCCcE
Confidence            444433 34444444    6999999999888654      277888999888765443    46678998876  8987


Q ss_pred             Ee
Q 030327          154 FG  155 (179)
Q Consensus       154 IG  155 (179)
                      +.
T Consensus        91 ~~   92 (140)
T 3hz4_A           91 VW   92 (140)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.92  E-value=7.5e-05  Score=53.49  Aligned_cols=64  Identities=19%  Similarity=0.356  Sum_probs=45.0

Q ss_pred             HHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc-------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CC
Q 030327           81 LDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EG  151 (179)
Q Consensus        81 l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG  151 (179)
                      ++++++.. ++|+...    +||++|++....|.+.       ++.+..+|+++++++.    +..+...+|.+++  +|
T Consensus        17 f~~~~~~~-vlv~f~a----~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~~~~~~----~~~~v~~~Pt~~~~~~G   87 (126)
T 1x5e_A           17 WRELLEGD-WMIEFYA----PWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLS----GRFIINALPTIYHCKDG   87 (126)
T ss_dssp             HHHHTSSE-EEEEEEC----SSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTTCHHHH----HHTTCCSSSEEEEEETT
T ss_pred             HHHHhCCC-EEEEEEC----CCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcCCHHHH----HHcCCcccCEEEEEeCC
Confidence            34455555 4444444    6999999999888653       5788899998887643    3356778998866  88


Q ss_pred             EE
Q 030327          152 EF  153 (179)
Q Consensus       152 ~~  153 (179)
                      +.
T Consensus        88 ~~   89 (126)
T 1x5e_A           88 EF   89 (126)
T ss_dssp             EE
T ss_pred             eE
Confidence            73

>2ahe_A Chloride intracellular channel protein 4; glutathione-S-transferase superfamily, CLIC4, NCC27, chloride ION channel, metal transport; 1.80A {Homo sapiens} PDB: 2d2z_A

Probab=97.91  E-value=2e-05  Score=64.78  Aligned_cols=80  Identities=16%  Similarity=0.185  Sum_probs=61.2

Q ss_pred             cCCcEEEEEeeCC---CCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHH
Q 030327           86 TGNKVVLFMKGTK---DFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVE  162 (179)
Q Consensus        86 ~~~~Vvlysk~t~---~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~  162 (179)
                      ....++||.+...   ..+.||+|.+++-+|...|++|+.+.|+... ...++.+.+...++|++..||..|.....+.+
T Consensus        15 ~~~~i~ly~~~~~~~~~~~~~p~~~rv~~~L~~~gi~ye~~~v~~~~-~~~~~~~~nP~gkVPvL~~~g~~l~ES~aI~~   93 (267)
T 2ahe_A           15 KEPLIELFVKAGSDGESIGNCPFSQRLFMILWLKGVVFSVTTVDLKR-KPADLQNLAPGTHPPFITFNSEVKTDVNKIEE   93 (267)
T ss_dssp             -CCCEEEEEEBCTTSSSBCSCHHHHHHHHHHHHHTCCCEEEEECTTS-CCHHHHHHSTTCCSCEEEETTEEECCHHHHHH
T ss_pred             cCCCEEEEEecCCCccCCCCCchHHHHHHHHHHcCCCCEEEEeCccc-ChHHHHHhCCCCCCCEEEECCEEecCHHHHHH
Confidence            3567999954322   2258999999999999999999998886421 12455667778899999999999999888888


Q ss_pred             HHHc
Q 030327          163 AYKN  166 (179)
Q Consensus       163 l~~~  166 (179)
                      +.++
T Consensus        94 YL~~   97 (267)
T 2ahe_A           94 FLEE   97 (267)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7543

>4g10_A Glutathione S-transferase homolog; thioredoxin fold; HET: MSE GSH; 1.20A {Sphingomonas paucimobilis}

Probab=97.90  E-value=1.7e-05  Score=65.14  Aligned_cols=76  Identities=17%  Similarity=0.240  Sum_probs=58.5

Q ss_pred             cCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHH-HHHHhcCCCCcceEee-CCEEEeecHHHHHH
Q 030327           86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQ-GLKEYSSWPTFPQLYI-EGEFFGGCDITVEA  163 (179)
Q Consensus        86 ~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~-~L~~~sg~~tvP~VfI-dG~~IGG~del~~l  163 (179)
                      +.+.++||..     +.||||++|+-+|.++|++|+.++|+-...-.+ .+.+.+...+||++.+ ||..|.....+.++
T Consensus         3 ~p~~~~LY~~-----~~sP~~~rv~i~L~e~gi~ye~~~vd~~~~~pe~~~~~~nP~g~VPvL~~d~g~~l~ES~aI~~Y   77 (265)
T 4g10_A            3 EPQELTIYHI-----PGCPFSERVEIMLELKGLRMKDVEIDISKPRPDWLLAKTGGTTALPLLDVENGESLKESMVILRY   77 (265)
T ss_dssp             CCCCCEEEEC-----TTCHHHHHHHHHHHHHTCCCEEEECCTTSCCCHHHHHHHTSCCCSCEEECTTSCEEECHHHHHHH
T ss_pred             CCCceEEEec-----CCChHHHHHHHHHHHhCCCCEEEEeCCCCCCcHHHHHhcCCCCccceEEECCCeEEeccHHHHHH
Confidence            4567999998     599999999999999999999988853211112 2345677889999976 78888888888777


Q ss_pred             HHc
Q 030327          164 YKN  166 (179)
Q Consensus       164 ~~~  166 (179)
                      .++
T Consensus        78 L~~   80 (265)
T 4g10_A           78 LEQ   80 (265)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            543

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=97.90  E-value=0.00011  Score=50.56  Aligned_cols=65  Identities=17%  Similarity=0.284  Sum_probs=45.3

Q ss_pred             hhhcC-CcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CCEE
Q 030327           83 KVVTG-NKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEF  153 (179)
Q Consensus        83 ~li~~-~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG~~  153 (179)
                      ++++. ..++++..+    +||++|++....|++.      ++.+..+|+++++++.    +..|...+|.+++  +|+.
T Consensus        12 ~~~~~~~~~~v~f~~----~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~----~~~~v~~~Pt~~~~~~G~~   83 (105)
T 1nsw_A           12 QAIQGDGPVLVDFWA----AWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETT----SQFGIMSIPTLILFKGGRP   83 (105)
T ss_dssp             HHHSSSSCEEEEEEC----TTCHHHHHHHHHHHHHHHHSTTTCEEEEEETTTCHHHH----HHTTCCSSSEEEEEETTEE
T ss_pred             HHHhCCCcEEEEEEC----CCCHHHHHHHHHHHHHHHHhcCCcEEEEEECcCCHHHH----HHcCCccccEEEEEeCCeE
Confidence            44443 345555544    6999999999887653      3678888888886543    3457778999877  9986


Q ss_pred             Ee
Q 030327          154 FG  155 (179)
Q Consensus       154 IG  155 (179)
                      ++
T Consensus        84 ~~   85 (105)
T 1nsw_A           84 VK   85 (105)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=97.90  E-value=2.6e-05  Score=54.02  Aligned_cols=60  Identities=18%  Similarity=0.271  Sum_probs=42.6

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CCEEEe
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEFFG  155 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG~~IG  155 (179)
                      ..++|+..+    +||++|+.....|++.      ++.+..+|+++++++.    +..|...+|.+++  +|+.++
T Consensus        21 ~~~~v~f~~----~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~v~~~Pt~~~~~~G~~~~   88 (108)
T 2trx_A           21 GAILVDFWA----EWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA----PKYGIRGIPTLLLFKNGEVAA   88 (108)
T ss_dssp             SEEEEEEEC----TTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTTHH----HHTTCCSSSEEEEEETTEEEE
T ss_pred             CeEEEEEEC----CCCHhHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHHH----HHcCCcccCEEEEEeCCEEEE
Confidence            345555554    6999999999888653      3667788888776543    3457778999877  998753

>1axd_A Glutathione S-transferase I; transferase, herbicide detoxification, transferase-transfera inhibitor complex; HET: GGL CYW; 2.50A {Zea mays} SCOP: a.45.1.1 c.47.1.5 PDB: 1bye_A*

Probab=97.90  E-value=2.5e-05  Score=60.40  Aligned_cols=72  Identities=11%  Similarity=-0.012  Sum_probs=58.9

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC--HHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN--EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d--~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      .+.+|..     +.||+|.+++-+|...|++|+.+.++..  +....++.+.+...++|.+..||..+.+...+.++.+
T Consensus         2 ~~~Ly~~-----~~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~   75 (209)
T 1axd_A            2 PMKLYGA-----VMSWNLTRCATALEEAGSDYEIVPINFATAEHKSPEHLVRNPFGQVPALQDGDLYLFESRAICKYAA   75 (209)
T ss_dssp             CEEEESC-----TTCTTHHHHHHHHHHHTCCEEEECCCTTTTGGGSHHHHTTCTTCCSCEEEETTEEEESHHHHHHHHH
T ss_pred             ceEEEeC-----CCCchHHHHHHHHHhcCCCCEEEeccccccCcCChHHHHhCcCCCCCeEEECCEEEecHHHHHHHHH
Confidence            4678887     5899999999999999999999888642  2234566667778899999999999999988877654

>4hi7_A GI20122; GST, glutathione S-transferase, enzyme function initiative, structural genomics, unknown function; HET: GSH; 1.25A {Drosophila mojavensis}

Probab=97.90  E-value=3.2e-05  Score=61.13  Aligned_cols=72  Identities=14%  Similarity=0.081  Sum_probs=59.0

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcC--CCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNIL--ENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~--~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      +.+||+.     +.||+|++|+-+|.+.|++|+.+.|+  ..+....++.+++...++|++..||..|.....+.++..
T Consensus         3 kpiLY~~-----~~Sp~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~d~~~~l~eS~aI~~YL~   76 (228)
T 4hi7_A            3 KPILYGI-----DASPPVRAVKLTLAALQLPYDYKIVNLMNKEQHSEEYLKKNPQHTVPLLEDGDANIADSHAIMAYLV   76 (228)
T ss_dssp             CCEEEEC-----TTCHHHHHHHHHHHHHTCCCEEEECCTTTTGGGSHHHHHHCTTCCSCEEEETTEEEESHHHHHHHHH
T ss_pred             ceEEEEC-----CCChHHHHHHHHHHHhCCCCEEEEecCCCcccCCHHHHHhCCCCceeeEEECCEEEechHHHHHHHH
Confidence            4578988     59999999999999999999988775  334444566777778899999999999999888877653

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=97.89  E-value=3.4e-05  Score=54.44  Aligned_cols=62  Identities=21%  Similarity=0.337  Sum_probs=45.5

Q ss_pred             cCCcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CCEEEe
Q 030327           86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEFFG  155 (179)
Q Consensus        86 ~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG~~IG  155 (179)
                      ....++|+..+    +||++|++....|++.      ++.+..+|+++++++    .+..|...+|.+++  +|+.++
T Consensus        16 ~~~~~lv~f~a----~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~l----~~~~~v~~~Pt~~~~~~G~~~~   85 (112)
T 2voc_A           16 SEGVVLADFWA----PWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQET----AGKYGVMSIPTLLVLKDGEVVE   85 (112)
T ss_dssp             SSSEEEEEEEC----TTBGGGGGHHHHHHHHHHHHTTTCEEEEEETTTCCSH----HHHTTCCSBSEEEEEETTEEEE
T ss_pred             CCCEEEEEEEC----CCCHHHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHH----HHHcCCCcccEEEEEeCCEEEE
Confidence            55556665554    6999999988887652      577888999887654    33457778999977  998754

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=97.89  E-value=2.2e-05  Score=56.32  Aligned_cols=61  Identities=16%  Similarity=0.167  Sum_probs=41.9

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEE--cCCCHHHHHHHHHhcCCCCcceEee---CCEEEe
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVN--ILENEMLRQGLKEYSSWPTFPQLYI---EGEFFG  155 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vd--V~~d~~~~~~L~~~sg~~tvP~VfI---dG~~IG  155 (179)
                      ...++|+..+    +||++|++....|.+.      ++.+..+|  ++.+.    .+.+..|...+|.+++   +|+.++
T Consensus        26 ~k~~lv~f~a----~wC~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~d~~~----~~~~~~~v~~~Pt~~~~~~~G~~~~   97 (126)
T 2l57_A           26 GIPTIIMFKT----DTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEKNI----DLAYKYDANIVPTTVFLDKEGNKFY   97 (126)
T ss_dssp             SSCEEEEEEC----SSCHHHHHHHHHHHHHHHHSSSSCEEEEEETTSSHHH----HHHHHTTCCSSSEEEEECTTCCEEE
T ss_pred             CCcEEEEEEC----CCCccHHHHHHHHHHHHHHhcCCeEEEEEeCCCCchH----HHHHHcCCcceeEEEEECCCCCEEE
Confidence            3445555554    6999999998888652      56677788  54443    3444557889999977   887653

>1yy7_A SSPA, stringent starvation protein A; GST fold, transcription; HET: CIT; 2.02A {Yersinia pestis}

Probab=97.89  E-value=3.6e-05  Score=60.23  Aligned_cols=74  Identities=23%  Similarity=0.247  Sum_probs=59.9

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHc
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKN  166 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~  166 (179)
                      ...+++|..     +.||+|.+++-+|...|++|+.+.++-. ....++.+.+...++|++..||..+.+...+.++.++
T Consensus         8 ~~~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~-~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~~   81 (213)
T 1yy7_A            8 RSVMTLFSG-----PTDIFSHQVRIVLAEKGVSVEIEQVEAD-NLPQDLIDLNPYRTVPTLVDRELTLYESRIIMEYLDE   81 (213)
T ss_dssp             SSSEEEEEC-----TTCHHHHHHHHHHHHHTCCEEEEECCTT-SCCHHHHHHCTTCCSSEEEETTEEEESHHHHHHHHHH
T ss_pred             CCceEEEcC-----CCChhHHHHHHHHHHcCCCCeEEeCCcc-cCcHHHHHHCCCCCCCEEEECCEEEecHHHHHHHHHH
Confidence            346899998     4899999999999999999999998642 1224556667788999999999999998888876543

>1zl9_A GST class-sigma, glutathione S-transferase 5; glutathione transferase, C.elegans; HET: GSH; 2.01A {Caenorhabditis elegans}

Probab=97.88  E-value=7.5e-05  Score=57.91  Aligned_cols=72  Identities=15%  Similarity=0.177  Sum_probs=59.5

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHh--cCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEY--SSWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~--sg~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      ..+++|..     +.||+|.+++-+|...|++|+.+.++.+.  ..++++.  +...++|.+..||..+.+...+.++.+
T Consensus         2 ~~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~~--~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~   74 (207)
T 1zl9_A            2 VSYKLTYF-----NGRGAGEVSRQIFAYAGQQYEDNRVTQEQ--WPALKETCAAPFGQLPFLEVDGKKLAQSHAIARFLA   74 (207)
T ss_dssp             CCEEEEEE-----SSSGGGHHHHHHHHHHTCCCEEEEECTTT--HHHHHHTTCSTTSCSCEEEETTEEEECHHHHHHHHH
T ss_pred             CceEEEEc-----CCCchHHHHHHHHHHcCCCceEEEecHHH--HHHHhhccCCCCCCCCEEEECCEEEeeHHHHHHHHH
Confidence            45789988     48999999999999999999999987432  2566777  677899999999999999988887654


Q ss_pred             c
Q 030327          166 N  166 (179)
Q Consensus       166 ~  166 (179)
                      +
T Consensus        75 ~   75 (207)
T 1zl9_A           75 R   75 (207)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1pn9_A GST class-delta, glutathione S-transferase 1-6; protein inhibitor complex; HET: GTX; 2.00A {Anopheles gambiae} SCOP: a.45.1.1 c.47.1.5

Probab=97.88  E-value=4e-05  Score=59.70  Aligned_cols=70  Identities=9%  Similarity=0.006  Sum_probs=56.9

Q ss_pred             EEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCC--CHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327           91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE--NEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        91 vlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~--d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      .+|..     +.||+|.+++-+|...|++|+.+.++-  .+....++.+.+...++|.+..||..|.+...+.++..
T Consensus         2 ~Ly~~-----~~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~   73 (209)
T 1pn9_A            2 DFYYL-----PGSAPCRAVQMTAAAVGVELNLKLTDLMKGEHMKPEFLKLNPQHCIPTLVDNGFALWESRAIQIYLA   73 (209)
T ss_dssp             EEEEC-----TTCHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSHHHHHHCTTCCSSEEEETTEEEESHHHHHHHHH
T ss_pred             eEEeC-----CCCccHHHHHHHHHHcCCCcEEEEecccCCCcCCHHHHhhCCCCCCCEEEECCEEEEeHHHHHHHHH
Confidence            57777     589999999999999999999988863  22233566677778899999999999999888877654

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=97.88  E-value=0.00017  Score=49.28  Aligned_cols=60  Identities=17%  Similarity=0.234  Sum_probs=42.2

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CCEEEe
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEFFG  155 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG~~IG  155 (179)
                      ..++++..+    +||++|+.....|.+.      ++.+..+|+++++++.    +..|...+|.+++  +|+.+.
T Consensus        19 ~~~~v~f~~----~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~v~~~Pt~~~~~~g~~~~   86 (105)
T 1fb6_A           19 VPVMVDFWA----PWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIA----TQYNIRSIPTVLFFKNGERKE   86 (105)
T ss_dssp             SCEEEEEEC----TTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHH----HHTTCCSSSEEEEEETTEEEE
T ss_pred             CcEEEEEEC----CCChHHHHHHHHHHHHHHHhcCceEEEEEcCcchHHHH----HhCCCCcccEEEEEeCCeEEE
Confidence            345555544    6999999998888552      3677888888776543    3446778998877  887653

>2on7_A Nagst-1, Na glutathione S-transferase 1; hookworm; 2.40A {Necator americanus}

Probab=97.87  E-value=7.4e-05  Score=57.66  Aligned_cols=71  Identities=15%  Similarity=0.096  Sum_probs=59.2

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      ..+++|..     +.||+|.+++-+|...|++|+.+.++.  +-..++++.+...++|.+..||..+.+...+.++.+
T Consensus         2 ~~~~Ly~~-----~~s~~~~~vr~~L~~~gi~~e~~~v~~--~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~   72 (206)
T 2on7_A            2 VHYKLTYF-----AIRGAGECARQIFALADQEFEDVRLDK--EQFAKVKPDLPFGQVPVLEVDGKQLAQSLAICRYLA   72 (206)
T ss_dssp             CCEEEEEE-----SSSTTTHHHHHHHHHHTCCCEEEEECH--HHHHHHGGGSSSSCSCEEEETTEEEECHHHHHHHHH
T ss_pred             CceEEEEc-----CCCcchHHHHHHHHHcCCCeeEEEecH--HHHHHhCcCCCCCCCCEEEECCEEEeeHHHHHHHHH
Confidence            35789988     489999999999999999999999863  223566777788899999999999999888877654

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=97.87  E-value=9.5e-05  Score=54.14  Aligned_cols=62  Identities=23%  Similarity=0.258  Sum_probs=44.1

Q ss_pred             cCCcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CCEEEe
Q 030327           86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEFFG  155 (179)
Q Consensus        86 ~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG~~IG  155 (179)
                      +..+++|+..+    +||++|+.....|++.      ++.|..+|+++++++.    +..|...+|.+++  +|+.+.
T Consensus        49 ~~~~vvv~f~~----~~C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~----~~~~v~~~Pt~~~~~~G~~~~  118 (140)
T 1v98_A           49 GAPLTLVDFFA----PWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLA----ARYGVRSVPTLVLFRRGAPVA  118 (140)
T ss_dssp             CCCEEEEEEEC----TTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHH----HHTTCCSSSEEEEEETTEEEE
T ss_pred             cCCCEEEEEEC----CCCHHHHHHHHHHHHHHHHccCceEEEEEECCCCHHHH----HHCCCCccCEEEEEeCCcEEE
Confidence            34445555554    6999999999888653      3678888888876543    3447778998877  998653

>3vln_A GSTO-1, glutathione S-transferase omega-1; GST fold, reductase; HET: ASC; 1.70A {Homo sapiens} PDB: 1eem_A* 3lfl_A*

Probab=97.87  E-value=2.6e-05  Score=62.08  Aligned_cols=74  Identities=16%  Similarity=0.184  Sum_probs=60.2

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee-CCEEEeecHHHHHHHH
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYI-EGEFFGGCDITVEAYK  165 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI-dG~~IGG~del~~l~~  165 (179)
                      .+.++||..     +.||+|.+++-+|...|++|+.+.|+-.. ..+++.+.+...++|.+.. ||..+.....+.++..
T Consensus        21 ~~~~~Ly~~-----~~sp~~~~v~~~L~~~gi~ye~~~v~~~~-~~~~~~~~~P~g~vP~L~~~~g~~l~eS~aI~~yL~   94 (241)
T 3vln_A           21 EGSIRIYSM-----RFSPFAERTRLVLKAKGIRHEVININLKN-KPEWFFKKNPFGLVPVLENSQGQLIYESAITCEYLD   94 (241)
T ss_dssp             TTCEEEEEC-----TTCHHHHHHHHHHHHHTCCEEEEEBCTTS-CCTTHHHHCTTCCSCEEECTTCCEEESHHHHHHHHH
T ss_pred             CCeEEEEcC-----CCCcHHHHHHHHHHHcCCCCeEEecCccc-CCHHHHHhCCCCCCCEEEECCCcEEEcHHHHHHHHH
Confidence            467999999     59999999999999999999999886432 1234566777889999999 9999999888877654


Q ss_pred             c
Q 030327          166 N  166 (179)
Q Consensus       166 ~  166 (179)
                      +
T Consensus        95 ~   95 (241)
T 3vln_A           95 E   95 (241)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=97.86  E-value=0.00013  Score=50.16  Aligned_cols=61  Identities=21%  Similarity=0.313  Sum_probs=43.1

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCEEEe
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEFFG  155 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~~IG  155 (179)
                      ...++|+..+    +||++|+.....|.+.      ++.+..+|++.++++.+    ..+...+|.+  |.+|+.++
T Consensus        21 ~~~~lv~f~~----~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~i~~~Pt~~~~~~g~~~~   89 (109)
T 3tco_A           21 NKLVLVDCWA----EWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKIAD----KYSVLNIPTTLIFVNGQLVD   89 (109)
T ss_dssp             SSEEEEEEEC----TTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHHH----HTTCCSSSEEEEEETTEEEE
T ss_pred             CCeEEEEEEC----CCCHHHHhhhHHHHHHHHHhCCCceEEEEccccCHHHHH----hcCcccCCEEEEEcCCcEEE
Confidence            4445555444    6999999999888654      36688889988876543    3477789985  45897664

>1oyj_A Glutathione S-transferase; herbicide detoxification; HET: GSH; 1.95A {Oryza sativa} SCOP: a.45.1.1 c.47.1.5

Probab=97.86  E-value=4.5e-05  Score=60.50  Aligned_cols=74  Identities=12%  Similarity=0.021  Sum_probs=59.0

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCC-CCcceEeeCCEEEeecHHHHHHHH
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSW-PTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~-~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      ...+.||..     +.||+|.+++-+|...|++|+.+.++-. ...+++.+.... .++|.+..||..|.+...+.++..
T Consensus         4 ~~~~~Ly~~-----~~sp~~~~v~~~L~~~gi~~e~~~v~~~-~~~~~~~~~nP~~g~vP~L~~~g~~l~eS~aI~~yL~   77 (231)
T 1oyj_A            4 EKELVLLDF-----WVSPFGQRCRIAMAEKGLEFEYREEDLG-NKSDLLLRSNPVHRKIPVLLHAGRPVSESLVILQYLD   77 (231)
T ss_dssp             SCCEEEEEC-----TTCHHHHHHHHHHHHHTCCCEEEECCTT-SCCHHHHHHSTTTCCSCEEEETTEEEESHHHHHHHHH
T ss_pred             CCceEEEeC-----CCChHHHHHHHHHHHCCCCCeEEecCcc-cCCHHHHhhCCCCCCCCEEEECCEEEecHHHHHHHHH
Confidence            467999988     4899999999999999999999988632 112345556665 699999999999999888877654


Q ss_pred             c
Q 030327          166 N  166 (179)
Q Consensus       166 ~  166 (179)
                      +
T Consensus        78 ~   78 (231)
T 1oyj_A           78 D   78 (231)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3lyk_A Stringent starvation protein A homolog; structural genomics, GST-superfamily, SSPA, PSI-2, protein structure initiative; 2.10A {Haemophilus influenzae}

Probab=97.86  E-value=4.3e-05  Score=59.91  Aligned_cols=72  Identities=19%  Similarity=0.234  Sum_probs=59.4

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHc
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKN  166 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~  166 (179)
                      .++||..     +.||+|.+++-+|...|++|+.+.|+-. ...+++.+.+...++|.+..||..+.+...+.++.++
T Consensus         6 ~~~Ly~~-----~~sp~~~~v~~~L~~~gi~~e~~~v~~~-~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~~   77 (216)
T 3lyk_A            6 VMTLFSN-----KDDIYCHQVKIVLAEKGVLYENAEVDLQ-ALPEDLMELNPYGTVPTLVDRDLVLFNSRIIMEYLDE   77 (216)
T ss_dssp             CEEEEEC-----TTCHHHHHHHHHHHHHTCCCEEEECCTT-SCCHHHHHHCTTCCSCEEEETTEEEESHHHHHHHHHH
T ss_pred             eEEEEeC-----CCChhHHHHHHHHHHcCCCcEEEeCCcc-cCcHHHHhhCCCCCcCeEEECCeEecCHHHHHHHHHH
Confidence            4889998     5999999999999999999999988643 1234566677888999999999999999888776543

>1e6b_A Glutathione S-transferase; 1.65A {Arabidopsis thaliana} SCOP: a.45.1.1 c.47.1.5

Probab=97.85  E-value=4.9e-05  Score=59.53  Aligned_cols=75  Identities=13%  Similarity=0.103  Sum_probs=60.1

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC--HHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHH
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN--EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAY  164 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d--~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~  164 (179)
                      +..+.||..     +.|++|.+++-+|...|++|+.+.++-.  +....++.+.+...++|++..||..+.+...+.++.
T Consensus         6 ~~~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~yL   80 (221)
T 1e6b_A            6 EEKLKLYSY-----WRSSCAHRVRIALALKGLDYEYIPVNLLKGDQFDSDFKKINPMGTVPALVDGDVVINDSFAIIMYL   80 (221)
T ss_dssp             --CCEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEECCTTTTGGGCHHHHHHCTTCCSSEEEETTEEEESHHHHHHHH
T ss_pred             CCCeEEEec-----CCCCchHHHHHHHHHcCCCCEEEEecCCcccccCHHHHhhCCCCCCCEEEECCEEEeeHHHHHHHH
Confidence            346889988     4899999999999999999999988642  233455667778889999999999999988887765


Q ss_pred             Hc
Q 030327          165 KN  166 (179)
Q Consensus       165 ~~  166 (179)
                      .+
T Consensus        81 ~~   82 (221)
T 1e6b_A           81 DE   82 (221)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2imi_A Epsilon-class glutathione S-transferase; HET: GSH; 1.40A {Anopheles gambiae} PDB: 2il3_A* 2imk_A*

Probab=97.85  E-value=5e-05  Score=59.61  Aligned_cols=72  Identities=17%  Similarity=0.134  Sum_probs=59.0

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCC--CHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE--NEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~--d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      +++||..     +.||+|.+++-+|...|++|+.+.++-  .+....++.+.+...++|.+..||..+.+...+.++..
T Consensus         3 ~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~yL~   76 (221)
T 2imi_A            3 NLVLYTL-----HLSPPCRAVELTAKALGLELEQKTINLLTGDHLKPEFVKLNPQHTIPVLDDNGTIITESHAIMIYLV   76 (221)
T ss_dssp             CEEEEEC-----TTCHHHHHHHHHHHHHTCCEEEEECCGGGTGGGSHHHHTTCTTCCSCEEEETTEEEESHHHHHHHHH
T ss_pred             ceEEeeC-----CCCccHHHHHHHHHHcCCCceEEEccccccccCCHHHHhhCcCCCCCEEEECCEEEeeHHHHHHHHH
Confidence            5889988     599999999999999999999998863  22234556667778899999999999999888877654

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=97.85  E-value=0.00015  Score=53.05  Aligned_cols=70  Identities=14%  Similarity=0.135  Sum_probs=47.0

Q ss_pred             HHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc----CCCeEEEEcCCCH-----HHHHHHHHhcCCCCcceEee--
Q 030327           81 LDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL----NAPFETVNILENE-----MLRQGLKEYSSWPTFPQLYI--  149 (179)
Q Consensus        81 l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~----gv~y~~vdV~~d~-----~~~~~L~~~sg~~tvP~VfI--  149 (179)
                      +++.++. .++|+...    +||++|++....|++.    ++.+..+|++++.     +....+.+..|...+|.+++  
T Consensus        26 ~~~~~~~-~vlv~F~a----~wC~~C~~~~p~l~~l~~~~~v~~~~vd~~~~~~~~~~d~~~~l~~~~~v~~~Pt~~~~~  100 (135)
T 3emx_A           26 FRQLLQG-DAILAVYS----KTCPHCHRDWPQLIQASKEVDVPIVMFIWGSLIGERELSAARLEMNKAGVEGTPTLVFYK  100 (135)
T ss_dssp             HHHHHTS-SEEEEEEE----TTCHHHHHHHHHHHHHHTTCCSCEEEEEECTTCCHHHHHHHHHHHHHHTCCSSSEEEEEE
T ss_pred             HHHHhCC-cEEEEEEC----CcCHhhhHhChhHHHHHHHCCCEEEEEECCCchhhhhhhhhHHHHHHcCCceeCeEEEEc
Confidence            4445555 66666665    6999999999888654    5778888885431     22344555568888998744  


Q ss_pred             CCEEEe
Q 030327          150 EGEFFG  155 (179)
Q Consensus       150 dG~~IG  155 (179)
                      +|+.++
T Consensus       101 ~G~~v~  106 (135)
T 3emx_A          101 EGRIVD  106 (135)
T ss_dssp             TTEEEE
T ss_pred             CCEEEE
Confidence            787654

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=97.84  E-value=4e-05  Score=50.18  Aligned_cols=50  Identities=16%  Similarity=0.139  Sum_probs=37.3

Q ss_pred             CCCchHHHHHHHHHh----cCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEe
Q 030327          101 PQCGFSHTVVQILKS----LNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFG  155 (179)
Q Consensus       101 p~Cp~C~~ak~lL~~----~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IG  155 (179)
                      +||++|+.+...|++    ++.++..++|+ +.+    +.+..|...+|.+++||+.+.
T Consensus         9 ~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~-~~~----~~~~~~v~~~Pt~~~~G~~~~   62 (77)
T 1ilo_A            9 TGCANCQMLEKNAREAVKELGIDAEFEKIK-EMD----QILEAGLTALPGLAVDGELKI   62 (77)
T ss_dssp             SSSSTTHHHHHHHHHHHHHTTCCEEEEEEC-SHH----HHHHHTCSSSSCEEETTEEEE
T ss_pred             CCChhHHHHHHHHHHHHHHcCCceEEEEec-CHH----HHHHCCCCcCCEEEECCEEEE
Confidence            399999998887654    46667777776 433    344458889999999998764

>1tw9_A Glutathione S-transferase 2; 1.71A {Heligmosomoides polygyrus} SCOP: a.45.1.1 c.47.1.5

Probab=97.84  E-value=7.2e-05  Score=57.71  Aligned_cols=72  Identities=14%  Similarity=0.130  Sum_probs=59.2

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHc
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKN  166 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~  166 (179)
                      ..+++|..     +.||+|.+++-+|...|++|+.+.++.  +-..++++.+...++|.+..||..|.+...+.++..+
T Consensus         2 ~~~~Ly~~-----~~s~~~~~v~~~L~~~gi~ye~~~v~~--~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~~   73 (206)
T 1tw9_A            2 VHYKLTYF-----NGRGAGECARQVFALADQKYEDVRLTQ--ETFVPLKATFPFGQVPVLEVDGQQLAQSQAICRYLAK   73 (206)
T ss_dssp             CCEEEEEE-----SSSGGGHHHHHHHHHTTCCCEEEEECH--HHHGGGGGGSTTSCSCEEEETTEEEECHHHHHHHHHH
T ss_pred             CceEEEEc-----CCCccHHHHHHHHHHcCCCceEEEeCH--HHHHHHcccCCCCCCCEEEECCEEEecHHHHHHHHHH
Confidence            45789988     489999999999999999999999863  2234566677788999999999999999888776543

>1v2a_A Glutathione transferase GST1-6; glutathione S-transferase, detoxification, xenobiotics; HET: GTS; 2.15A {Anopheles dirus} SCOP: a.45.1.1 c.47.1.5

Probab=97.84  E-value=7.2e-05  Score=58.12  Aligned_cols=69  Identities=12%  Similarity=0.032  Sum_probs=57.6

Q ss_pred             EEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC--HHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327           91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN--EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        91 vlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d--~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      .+|..     +.||+|.+++-+|...|++|+.+.++-.  +.. .++.+.+...++|.+..||..+.+...+.++.+
T Consensus         2 ~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~-~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~yL~   72 (210)
T 1v2a_A            2 DYYYS-----LISPPCQSAILLAKKLGITLNLKKTNVHDPVER-DALTKLNPQHTIPTLVDNGHVVWESYAIVLYLV   72 (210)
T ss_dssp             EEEEC-----TTCHHHHHHHHHHHHHTCCCEEEECCTTCHHHH-HHHHHHCTTCCSCEEEETTEEEESHHHHHHHHH
T ss_pred             eEEeC-----CCCccHHHHHHHHHHcCCCcEEEECCcccchhh-HHHHHhCCCCCcCeEEECCEEEEcHHHHHHHHH
Confidence            57777     5899999999999999999999888642  334 777778888899999999999999888777654

>1gnw_A Glutathione S-transferase; herbicide detoxification; HET: GTX; 2.20A {Arabidopsis thaliana} SCOP: a.45.1.1 c.47.1.5 PDB: 1bx9_A*

Probab=97.84  E-value=3e-05  Score=60.04  Aligned_cols=73  Identities=14%  Similarity=0.107  Sum_probs=58.5

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC--HHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHc
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN--EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKN  166 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d--~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~  166 (179)
                      ++.||..     +.||+|.+++-+|...|++|+.+.++-.  +....++.+.+...++|.+..||..+.+...+.++.++
T Consensus         2 ~~~Ly~~-----~~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~~   76 (211)
T 1gnw_A            2 GIKVFGH-----PASIATRRVLIALHEKNLDFELVHVELKDGEHKKEPFLSRNPFGQVPAFEDGDLKLFESRAITQYIAH   76 (211)
T ss_dssp             CEEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSTTGGGTCTTCCSCEEEETTEEEECHHHHHHHHHH
T ss_pred             eeEEEeC-----CCCcchHHHHHHHHhcCCCcEEEEeccccccccCHHHHHhCCCCCCCEEEECCEEEeCHHHHHHHHHH
Confidence            4788988     5999999999999999999999888532  22234555667788999999999999998888776543

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=97.83  E-value=0.00015  Score=51.83  Aligned_cols=61  Identities=20%  Similarity=0.252  Sum_probs=43.3

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHh-----cCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--C----CEEEe
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKS-----LNAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--E----GEFFG  155 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~-----~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--d----G~~IG  155 (179)
                      ...++|+..+    +||++|+.+...|.+     .++.+..+|+++++++.    +..+...+|.+++  +    |+.++
T Consensus        23 ~~~vlv~f~a----~wC~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~----~~~~i~~~Pt~~~~~~~~~~G~~~~   94 (118)
T 2f51_A           23 PGLVLVDFFA----TWCGPCQRLGQILPSIAEANKDVTFIKVDVDKNGNAA----DAYGVSSIPALFFVKKEGNEIKTLD   94 (118)
T ss_dssp             SSCEEEEEEC----TTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHH----HHTTCCSSSEEEEEEEETTEEEEEE
T ss_pred             CCEEEEEEEC----CCCHHHHHHHHHHHHHHHHCCCeEEEEEECCCCHHHH----HhcCCCCCCEEEEEeCCCCcceEEE
Confidence            3445555554    699999999988866     36789999998886643    3457778998855  5    66543

>3qav_A RHO-class glutathione S-transferase; cytosol; 2.10A {Laternula elliptica} PDB: 3qaw_A*

Probab=97.83  E-value=5.2e-05  Score=60.71  Aligned_cols=77  Identities=10%  Similarity=0.067  Sum_probs=61.6

Q ss_pred             hcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCC--CHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHH
Q 030327           85 VTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE--NEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVE  162 (179)
Q Consensus        85 i~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~--d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~  162 (179)
                      ..+.++++|..     +.||+|.+++-+|...|++|+.+.|+-  .+....++.+.+...++|.+..||..+.....+.+
T Consensus        22 s~~~~~~Ly~~-----~~sp~~~rv~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vPvL~~~g~~l~eS~aI~~   96 (243)
T 3qav_A           22 ATTSKPFVYWG-----SGSPPCWKVLLVLQEKKIDYDEKIISFSKKEHKSEEILELNPRGQVPTFTDGDVVVNESTAICM   96 (243)
T ss_dssp             ---CCCEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEECCTTTTGGGSHHHHHHCTTCCSCEEEETTEEECSHHHHHH
T ss_pred             cccCccEEEeC-----CCCcchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCEEEECCEEEecHHHHHH
Confidence            33567999998     499999999999999999999988853  23344667778888899999999999998888877


Q ss_pred             HHHc
Q 030327          163 AYKN  166 (179)
Q Consensus       163 l~~~  166 (179)
                      +.++
T Consensus        97 YL~~  100 (243)
T 3qav_A           97 YLEE  100 (243)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=97.83  E-value=9e-05  Score=53.59  Aligned_cols=72  Identities=13%  Similarity=0.155  Sum_probs=48.2

Q ss_pred             HHHHHHHHhhhc-CCcEEEEEeeCCCCCCCchHHHHHHHHH--h------cCCCeEEEEc---CCCHHHHHHHHHhcCC-
Q 030327           75 PELKSTLDKVVT-GNKVVLFMKGTKDFPQCGFSHTVVQILK--S------LNAPFETVNI---LENEMLRQGLKEYSSW-  141 (179)
Q Consensus        75 ~~~~~~l~~li~-~~~Vvlysk~t~~~p~Cp~C~~ak~lL~--~------~gv~y~~vdV---~~d~~~~~~L~~~sg~-  141 (179)
                      .+.++.++.... ...|+|+..+    +||++|++....|.  +      .++.+..+|+   +.+.++.    +..|. 
T Consensus        16 ~~~~~~~~~~~~~~k~vlv~f~a----~wC~~C~~~~~~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~l~----~~~~v~   87 (133)
T 3fk8_A           16 TQVKKALAAGKRTHKPTLLVFGA----NWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELS----QAYGDP   87 (133)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEEEC----TTCHHHHHHHHHHTSHHHHHHHHHHCEEEEEECTTTTSSHHHH----HHTTCG
T ss_pred             hHHHHHHHHHHhcCCcEEEEEcC----CCCHHHHHHHHHhCCHHHHHHhcCCEEEEEEeCCcccchHHHH----HHhCCc
Confidence            345566665543 4445555554    69999999998887  3      2567888888   5555543    34466 


Q ss_pred             --CCcceEee---CCEEE
Q 030327          142 --PTFPQLYI---EGEFF  154 (179)
Q Consensus       142 --~tvP~VfI---dG~~I  154 (179)
                        ..+|.+++   +|+.+
T Consensus        88 ~~~~~Pt~~~~d~~G~~~  105 (133)
T 3fk8_A           88 IQDGIPAVVVVNSDGKVR  105 (133)
T ss_dssp             GGGCSSEEEEECTTSCEE
T ss_pred             cCCccceEEEECCCCCEE
Confidence              78898854   78776

>4iel_A Glutathione S-transferase, N-terminal domain PROT; GST, glutathione S-transferase, enzyme function initiative, structural genomics; HET: GSH; 1.60A {Burkholderia ambifaria}

Probab=97.83  E-value=4.3e-05  Score=60.57  Aligned_cols=76  Identities=12%  Similarity=0.042  Sum_probs=59.3

Q ss_pred             hcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC--HHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHH
Q 030327           85 VTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN--EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVE  162 (179)
Q Consensus        85 i~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d--~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~  162 (179)
                      ..+.-+.||..     +.||+|.+++-+|...|++|+.+.|+-.  +....++.+.+...++|.+..||..+.+...+.+
T Consensus        19 ~m~~m~~Ly~~-----~~sp~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~   93 (229)
T 4iel_A           19 YFQSMLHILGK-----IPSINVRKVLWLCTELNLPFEQEDWGAGFRTTNDPAYLALNPNGLVPVIKDDGFVLWESNTIIR   93 (229)
T ss_dssp             ---CCEEEESC-----TTCHHHHHHHHHHHHHTCCEEEECCC-------CHHHHTTCTTCCSCEEEETTEEEECHHHHHH
T ss_pred             cccceEEEecC-----CCCcchHHHHHHHHHCCCCcEEEEecCCcCCcCCHHHHhcCCCCCCCEEEECCEEEEeHHHHHH
Confidence            33445899988     5999999999999999999999988632  3445567777888899999999999999988877


Q ss_pred             HHH
Q 030327          163 AYK  165 (179)
Q Consensus       163 l~~  165 (179)
                      +.+
T Consensus        94 yL~   96 (229)
T 4iel_A           94 YLA   96 (229)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>1gwc_A Glutathione S-transferase TSI-1; herbicide detoxification, plant, TAU class; HET: GTX; 2.25A {Aegilops tauschii} SCOP: a.45.1.1 c.47.1.5

Probab=97.83  E-value=5.9e-05  Score=59.43  Aligned_cols=74  Identities=16%  Similarity=0.072  Sum_probs=58.1

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCC-CCcceEeeCCEEEeecHHHHHHHH
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSW-PTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~-~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      ..++.||+.     +.||+|.+++-+|...|++|+.+.++-. ...+++.+.... .++|.+..||..|.+...+.++..
T Consensus         4 ~~~~~Ly~~-----~~sp~~~~v~~~L~~~gi~~e~~~v~~~-~~~~~~~~~nP~~g~vP~L~~~g~~l~eS~aI~~yL~   77 (230)
T 1gwc_A            4 GDDLKLLGA-----WPSPFVTRVKLALALKGLSYEDVEEDLY-KKSELLLKSNPVHKKIPVLIHNGAPVCESMIILQYID   77 (230)
T ss_dssp             CCCEEEEEC-----TTCHHHHHHHHHHHHHTCCCEEEECCTT-SCCHHHHHHSTTTCCSCEEEETTEEEESHHHHHHHHH
T ss_pred             CCcEEEEeC-----CCChHHHHHHHHHHHcCCCCeEEecccc-cCCHHHHhhCCCCCccCEEEECCEEeecHHHHHHHHH
Confidence            467899998     5899999999999999999999988632 112334555554 689999999999999888877654


Q ss_pred             c
Q 030327          166 N  166 (179)
Q Consensus       166 ~  166 (179)
                      +
T Consensus        78 ~   78 (230)
T 1gwc_A           78 E   78 (230)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=97.82  E-value=7e-05  Score=56.66  Aligned_cols=67  Identities=9%  Similarity=0.216  Sum_probs=46.7

Q ss_pred             HHhhhc-CCcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CC
Q 030327           81 LDKVVT-GNKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EG  151 (179)
Q Consensus        81 l~~li~-~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG  151 (179)
                      +++.++ ...++|+...    +||++|+.....|++.      ++.|..+|+++++++    .+..|...+|.+++  +|
T Consensus        57 f~~~~~~~~~vlv~F~a----~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~l----~~~~~i~~~Pt~~~~~~G  128 (155)
T 2ppt_A           57 LARAERDDLPLLVDFWA----PWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAV----AGRHRIQGIPAFILFHKG  128 (155)
T ss_dssp             HHHHTTCSSCEEEEEEC----TTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTSTHH----HHHTTCCSSSEEEEEETT
T ss_pred             HHHHHhCCCcEEEEEEC----CCCHHHHHHHHHHHHHHHHccCCEEEEEEeCCccHHH----HHHcCCCcCCEEEEEeCC
Confidence            444444 3345555554    7999999998888643      477888999887654    34457778998866  89


Q ss_pred             EEEe
Q 030327          152 EFFG  155 (179)
Q Consensus       152 ~~IG  155 (179)
                      +.+.
T Consensus       129 ~~~~  132 (155)
T 2ppt_A          129 RELA  132 (155)
T ss_dssp             EEEE
T ss_pred             eEEE
Confidence            8753

>3n5o_A Glutathione transferase; seattle structural genomics center for infectious disease, S GST, pathogenic fungus, coccidioidomycosis; HET: GSH; 1.85A {Coccidioides immitis} PDB: 3lg6_A*

Probab=97.82  E-value=5.9e-05  Score=59.61  Aligned_cols=74  Identities=14%  Similarity=0.080  Sum_probs=61.0

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCC--CHHHHHHHHHhcCCCCcceEeeCC-----------EE
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE--NEMLRQGLKEYSSWPTFPQLYIEG-----------EF  153 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~--d~~~~~~L~~~sg~~tvP~VfIdG-----------~~  153 (179)
                      ..+++||..     +.|++|.+++-+|...|++|+.+.|+-  .+....++.+.....++|++.++|           ..
T Consensus         7 ~~~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~~~~~~~~~~~   81 (235)
T 3n5o_A            7 TPNFELYGY-----FRSSCSGRLRIAFHLKSIPYTRHPVNLLKGEQHSDTYKSLNPTNTVPLLVVSNINNTVSPSSASFS   81 (235)
T ss_dssp             CCEEEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSHHHHHHCTTCCSCEEEEESSCCSSSTTCSEEE
T ss_pred             CCCeEEEec-----CCCcHHHHHHHHHHHcCCccEEEecccccccccCHHHHhcCCCCCCCEEEeCCCccccccccCcee
Confidence            367999998     489999999999999999999998853  233445677788888999999988           88


Q ss_pred             EeecHHHHHHHH
Q 030327          154 FGGCDITVEAYK  165 (179)
Q Consensus       154 IGG~del~~l~~  165 (179)
                      +.....+.++..
T Consensus        82 l~eS~aI~~yL~   93 (235)
T 3n5o_A           82 IGQSLAALEYLE   93 (235)
T ss_dssp             ECSHHHHHHHHH
T ss_pred             ehhHHHHHHHHH
Confidence            988888777654

>2a2r_A Glutathione S-transferase P; detoxification, nitric oxide carrier, S- nitrosoglutathione; HET: MES GSN; 1.40A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 11gs_A* 12gs_A* 14gs_A* 16gs_A* 18gs_A* 21gs_A* 13gs_A* 2a2s_A* 3dd3_A* 3dgq_A* 3n9j_A* 3pgt_A* 1pgt_A* 2pgt_A* 4pgt_A* 22gs_A* 17gs_A* 3gus_A* 10gs_A* 1aqv_A* ...

Probab=97.82  E-value=8.5e-05  Score=57.83  Aligned_cols=74  Identities=8%  Similarity=0.059  Sum_probs=59.1

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHc
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKN  166 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~  166 (179)
                      ..++||..     +.|++|.+++-+|...|++|+.+.|+-.+....+++..+...++|.+..||..|.+...+.++..+
T Consensus         2 ~~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~~   75 (210)
T 2a2r_A            2 PPYTVVYF-----PVRGRCAALRMLLADQGQSWKEEVVTVETWQEGSLKASCLYGQLPKFQDGDLTLYQSNTILRHLGR   75 (210)
T ss_dssp             CSEEEEEC-----SSSGGGHHHHHHHHHTTCCEEEEECCHHHHHHSHHHHHSTTSCSCEEEETTEEEECHHHHHHHHHH
T ss_pred             CceEEEEe-----CCcchHHHHHHHHHHcCCCceEEEecHHhhchhhccCCCCCCCCCEEEECCEEEeeHHHHHHHHHH
Confidence            35788988     479999999999999999999999864322223566677788999999999999998887776543

>2on5_A Nagst-2, Na glutathione S-transferase 2; hookworm; HET: GSH; 1.90A {Necator americanus}

Probab=97.82  E-value=4.6e-05  Score=58.81  Aligned_cols=71  Identities=15%  Similarity=0.119  Sum_probs=58.6

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      .++++|..     +.||+|.+++-+|...|++|+.+.++.+.  ..++++.+...++|.+..||..+.+...+.++.+
T Consensus         2 ~~~~Ly~~-----~~s~~~~~vr~~L~~~gi~ye~~~v~~~~--~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~   72 (206)
T 2on5_A            2 VHYKLTYF-----AGRGLAEPIRQIFALAGQKYEDVRYTFQE--WPKHKDEMPFGQIPVLEEDGKQLAQSFAIARYLS   72 (206)
T ss_dssp             CCEEEEEE-----SSSGGGHHHHHHHHHHTCCCEEEEECTTT--GGGGGGGSTTSCSCEEEETTEEEESHHHHHHHHH
T ss_pred             CceEEEec-----CCCcchHHHHHHHHHcCCCceEEEecHHH--HHHhccCCCCCCCCEEEECCEEEecHHHHHHHHH
Confidence            45789988     48999999999999999999999886431  2455667778899999999999999888877654

>2cvd_A Glutathione-requiring prostaglandin D synthase; glutathione-S-transferase, isomerase; HET: GSH HQL; 1.45A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1iyi_A* 1v40_A* 1iyh_A* 3vi5_A* 3vi7_A* 2vcq_A* 2vcw_A* 2vcx_A* 2vcz_A* 2vd0_A* 2vd1_A* 3kxo_A* 3ee2_A* 1pd2_1*

Probab=97.82  E-value=9.5e-05  Score=56.92  Aligned_cols=71  Identities=14%  Similarity=0.103  Sum_probs=59.1

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHc
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKN  166 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~  166 (179)
                      ++.+|..     +.||+|.+++-+|...|++|+.+.++.+  ...++++.+...++|.+..||..+.+...+.++.++
T Consensus         2 ~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~--~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~~   72 (198)
T 2cvd_A            2 NYKLTYF-----NMRGRAEIIRYIFAYLDIQYEDHRIEQA--DWPEIKSTLPFGKIPILEVDGLTLHQSLAIARYLTK   72 (198)
T ss_dssp             CEEEEEE-----SSSGGGHHHHHHHHHTTCCCEEEEECGG--GHHHHHTTSTTSCSCEEEETTEEEECHHHHHHHHHT
T ss_pred             CcEEEEc-----CCCchHHHHHHHHHHcCCCceEEEeCHH--HHHHhccCCCCCCCCEEEECCEEEecHHHHHHHHHH
Confidence            4788888     4899999999999999999999988642  235566777788999999999999999888887654

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=97.82  E-value=1.5e-05  Score=58.56  Aligned_cols=87  Identities=17%  Similarity=0.139  Sum_probs=56.0

Q ss_pred             HHhhhcCC---cEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeC
Q 030327           81 LDKVVTGN---KVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIE  150 (179)
Q Consensus        81 l~~li~~~---~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fId  150 (179)
                      .+.+.+..   .|+++...    +||+.|+.+...|+++     ++.|..+|+++.       .+..+-..+|.+  |.|
T Consensus        14 ~~~v~~~~~~~~vvv~F~a----~wc~~C~~~~p~l~~la~~~~~v~f~kvd~d~~-------~~~~~v~~~PT~~~fk~   82 (118)
T 3evi_A           14 VNEVTNAEEDVWVIIHLYR----SSIPMCLLVNQHLSLLARKFPETKFVKAIVNSC-------IQHYHDNCLPTIFVYKN   82 (118)
T ss_dssp             HHHTTTCCTTCEEEEEEEC----TTSHHHHHHHHHHHHHHHHCTTSEEEEEEGGGT-------STTCCGGGCSEEEEEET
T ss_pred             HHHHHhcCCCCeEEEEEeC----CCChHHHHHHHHHHHHHHHCCCCEEEEEEhHHh-------HHHCCCCCCCEEEEEEC
Confidence            33444443   46766665    7999999999999764     567888888764       134567788887  679


Q ss_pred             CEEEeecHHHHHH----HHcccHHHHHHhhhc
Q 030327          151 GEFFGGCDITVEA----YKNGELQELLEKALC  178 (179)
Q Consensus       151 G~~IGG~del~~l----~~~GeL~~~L~~a~~  178 (179)
                      |+.++...-...+    ....+|+.+|+..|+
T Consensus        83 G~~v~~~~G~~~~gg~~~~~~~le~~L~~~g~  114 (118)
T 3evi_A           83 GQIEAKFIGIIECGGINLKLEELEWKLAEVGA  114 (118)
T ss_dssp             TEEEEEEESTTTTTCSSCCHHHHHHHHHTTTS
T ss_pred             CEEEEEEeChhhhCCCCCCHHHHHHHHHHcCC
Confidence            9877543322211    223456677766653

>2v6k_A Maleylpyruvate isomerase; glutathione-S-transferase, GST, plasmid, bacterial, biodegradation, fumaryl pyruvate; HET: TGG; 1.3A {Ralstonia SP} PDB: 2jl4_A*

Probab=97.81  E-value=4.7e-05  Score=59.11  Aligned_cols=73  Identities=19%  Similarity=0.233  Sum_probs=58.9

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC--HHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHc
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN--EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKN  166 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d--~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~  166 (179)
                      ++.||..     +.||+|.+++-+|...|++|+.+.++-.  +....++.+.+...++|.+..||..+.+...+.++.++
T Consensus         2 ~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~~   76 (214)
T 2v6k_A            2 KMKLYNF-----WRSGTSHRLRIALNLKGVPYEYLAVHLGKEEHLKDAFKALNPQQLVPALDTGAQVLIQSPAIIEWLEE   76 (214)
T ss_dssp             CCEEEEC-----SSCHHHHHHHHHHHHHTCCCEEEECCTTTTGGGSHHHHHHCTTCCSCEEECSSCEEECHHHHHHHHHH
T ss_pred             eeEEEec-----CCCCcHHHHHHHHHHCCCCceEEecCCCcccccCHHHHhcCCCCcCCEEEECCEEEecHHHHHHHHHH
Confidence            4678887     4899999999999999999999888642  23345667777888999998889999998888776543

>2ws2_A NU-class GST, glutathione S-transferase; parasite, nematode; 2.01A {Haemonchus contortus}

Probab=97.80  E-value=5.8e-05  Score=58.27  Aligned_cols=72  Identities=15%  Similarity=0.149  Sum_probs=59.0

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHc
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKN  166 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~  166 (179)
                      ..++||..     +.||+|.+++-+|...|++|+.+.|+.+.  ..++++.+...++|.+..||..+.+...+.++.++
T Consensus         2 ~~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~~--~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~~   73 (204)
T 2ws2_A            2 VHYKLTYF-----NGRGAAEIIRQVFVLAGQDYEDVRLTHEE--WPKHKASMPFGQLPVLEVDGKQLPQSVAIVRYLAR   73 (204)
T ss_dssp             CCEEEEEE-----SSSGGGHHHHHHHHHTTCCCEEEEECTTT--GGGTGGGSTTSCSCEEEETTEEEESHHHHHHHHHH
T ss_pred             CccEEEEe-----CCCchHHHHHHHHHHcCCCceEEEecHhh--HHHhhhcCCCCCCCEEEECCEEeecHHHHHHHHHH
Confidence            45789988     48999999999999999999999886421  24556677788999999999999999888876543

>2vo4_A 2,4-D inducible glutathione S-transferase; herbicide, TAU class GST, S-(P-nitrobenzyl- glutathione); HET: GTB 4NM; 1.75A {Glycine max} PDB: 3fhs_A*

Probab=97.79  E-value=7.9e-05  Score=58.37  Aligned_cols=73  Identities=18%  Similarity=0.067  Sum_probs=57.8

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCC-CCcceEeeCCEEEeecHHHHHHHHc
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSW-PTFPQLYIEGEFFGGCDITVEAYKN  166 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~-~tvP~VfIdG~~IGG~del~~l~~~  166 (179)
                      .++.+|+.     +.||+|.+++-+|...|++|+.+.++-. ....++.+.+.. .++|.+..||..+.+...+.++..+
T Consensus         3 ~~~~Ly~~-----~~sp~~~~v~~~L~~~gi~~e~~~v~~~-~~~~~~~~~nP~~g~vP~L~~~g~~l~eS~aI~~yL~~   76 (219)
T 2vo4_A            3 DEVVLLDF-----WPSPFGMRVRIALAEKGIKYEYKEEDLR-NKSPLLLQMNPVHKKIPVLIHNGKPICESLIAVQYIEE   76 (219)
T ss_dssp             CCEEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEECCTT-SCCHHHHHHCTTTCCSCEEEETTEEEESHHHHHHHHHH
T ss_pred             CceEEEec-----cCCchHHHHHHHHHHcCCCceEEecCcc-cCCHHHHHhCCCCCcCCEEEECCEeeehHHHHHHHHHH
Confidence            46899988     4899999999999999999999888632 112344556664 6999999999999998888876553

>3lxz_A Glutathione S-transferase family protein; structural genomics, PP0183, PSI-2, protein structure initiative; 1.76A {Pseudomonas putida} PDB: 3pr8_A*

Probab=97.79  E-value=4.7e-05  Score=59.96  Aligned_cols=70  Identities=17%  Similarity=0.180  Sum_probs=58.8

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHc
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKN  166 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~  166 (179)
                      +.||..     +.||+|.+++-+|...|++|+.+.|..+  ...++.+.+...++|.+..||..+.+...+.++.++
T Consensus         3 ~~Ly~~-----~~sp~~~~v~~~L~~~gi~ye~~~v~~~--~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL~~   72 (229)
T 3lxz_A            3 LKLYGF-----SVSNYYNMVKLALLEKGLTFEEVTFYGG--QAPQALEVSPRGKVPVLETEHGFLSETSVILDYIEQ   72 (229)
T ss_dssp             EEEEEC-----TTCHHHHHHHHHHHHTTCCEEEEECCCC--SCHHHHTTSTTSCSCEEEETTEEEESHHHHHHHHHH
T ss_pred             EEEEeC-----CCCchHHHHHHHHHHcCCCCEEEecCCC--CCHHHHhhCCCCCcCeEEeCCceeecHHHHHHHHHh
Confidence            788988     5999999999999999999999999543  234566777888999999999999998888776553

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=97.78  E-value=0.00017  Score=50.84  Aligned_cols=60  Identities=15%  Similarity=0.256  Sum_probs=43.3

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CCEEEe
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEFFG  155 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG~~IG  155 (179)
                      ..++|+..+    +||++|+.+...|.+.      ++.+..+|+++++++.    +..|...+|.+++  +|+.+.
T Consensus        31 ~~~lv~f~~----~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~i~~~Pt~~~~~~g~~~~   98 (121)
T 2i1u_A           31 KPVLVDFWA----TWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETA----RNFQVVSIPTLILFKDGQPVK   98 (121)
T ss_dssp             SCEEEEEEC----TTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHH----HHTTCCSSSEEEEEETTEEEE
T ss_pred             CcEEEEEEC----CCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHH----HhcCCCcCCEEEEEECCEEEE
Confidence            345555554    6999999999888653      4778888998877653    3446778898876  888754

>3ay8_A Glutathione S-transferase; GST fold, GST binding, cytosolic; 2.10A {Bombyx mori}

Probab=97.78  E-value=5.3e-05  Score=59.27  Aligned_cols=72  Identities=13%  Similarity=0.095  Sum_probs=58.5

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC--HHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN--EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d--~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      .++||..     +.||+|.+++-+|...|++|+.+.++-.  +....++.+.+...++|.+..||..+.+...+.++.+
T Consensus         3 ~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~yL~   76 (216)
T 3ay8_A            3 SLKLYHF-----PVSGPSRGALLAARAIGIPIQIEIVNLFKKEQLQESFLKLNPQHCVPTLDDNNFVLWESRAIACYLA   76 (216)
T ss_dssp             CCEEEEC-----TTCHHHHHHHHHHHHHTCCCEEEECCTTCGGGCCHHHHHHSSSCCSSEEEETTEEEECHHHHHHHHH
T ss_pred             ceEEecC-----CCCccHHHHHHHHHHcCCCceEEEeccccccccCHHHHhhCCCCCCCeEEECCEEEEcHHHHHHHHH
Confidence            4788888     4899999999999999999999988632  2223456667778899999999999999888777654

>1yq1_A Glutathione S-transferase; nematoda, structural genomics, PSI, protein structure initiative; 3.00A {Caenorhabditis elegans}

Probab=97.78  E-value=4.7e-05  Score=58.87  Aligned_cols=72  Identities=14%  Similarity=0.134  Sum_probs=57.9

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      ..+++|..     +.||+|.+++-+|...|++|+.+.++-. +...++++.+...++|.+..||..+.+...+.++.+
T Consensus         2 ~~~~Ly~~-----~~s~~~~~vr~~L~~~gi~~e~~~v~~~-~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~   73 (208)
T 1yq1_A            2 PSYKLTYF-----FFRGLGEPIRLLFHLAGVQFEEVRMNPD-QTWLDIKDSTPMKQLPVLNIDGFELPQSGAILRYLA   73 (208)
T ss_dssp             CCEEEEEE-----SSSTTTHHHHHHHHHHTCCCEEEEECTT-TCCHHHHHTSTTSCSCEEEESSCEECCHHHHHHHHH
T ss_pred             CceEEEEe-----CCCCchHHHHHHHHHcCCCeEEEEeccc-chhhhhhccCCCCCCCEEEECCEEEeeHHHHHHHHH
Confidence            35789988     4899999999999999999999888621 112355667778899999999999999888877654

>1okt_A Glutathione S-transferase; GST; 1.9A {Plasmodium falciparum} SCOP: a.45.1.1 c.47.1.5 PDB: 1pa3_A 1q4j_A* 3fr9_A* 3frc_A* 2aaw_A* 3fr6_A 3fr3_A*

Probab=97.78  E-value=8.7e-05  Score=57.80  Aligned_cols=74  Identities=15%  Similarity=0.159  Sum_probs=59.0

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHH-----hcCCCCcceEeeCCEEEeecHHHHH
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKE-----YSSWPTFPQLYIEGEFFGGCDITVE  162 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~-----~sg~~tvP~VfIdG~~IGG~del~~  162 (179)
                      ..++||..     +.||+|.+++-+|...|++|+.+.++-..+...++++     .+...++|.+..||..|.....+.+
T Consensus         3 ~~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~   77 (211)
T 1okt_A            3 DNIVLYYF-----DARGKAELIRLIFAYLGIEYTDKRFGVNGDAFVEFKNFKKEKDTPFEQVPILQIGDLILAQSQAIVR   77 (211)
T ss_dssp             CCEEEEEE-----SSSTTTHHHHHHHHHHTCCCEEEEETSSSCHHHHHHHHHHHSCCSSSCSCEEEETTEEEECHHHHHH
T ss_pred             CccEEEEE-----CCCchhHHHHHHHHHcCCCceeeeccCCHHHHHHHhhccccccCCCCCCCEEEECCEEeehHHHHHH
Confidence            45889998     4899999999999999999999988421112345666     7778899999999999999888877


Q ss_pred             HHHc
Q 030327          163 AYKN  166 (179)
Q Consensus       163 l~~~  166 (179)
                      +..+
T Consensus        78 yL~~   81 (211)
T 1okt_A           78 YLSK   81 (211)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>1aw9_A Glutathione S-transferase III; herbicide detoxification; 2.20A {Zea mays} SCOP: a.45.1.1 c.47.1.5

Probab=97.77  E-value=1.9e-05  Score=61.48  Aligned_cols=73  Identities=14%  Similarity=0.098  Sum_probs=57.9

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC--HHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHc
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN--EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKN  166 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d--~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~  166 (179)
                      ++.||..     +.||+|.+++-+|...|++|+.+.++-.  +....++.+.+...++|++..||..|.+...+.++..+
T Consensus         2 ~~~Ly~~-----~~sp~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~~   76 (216)
T 1aw9_A            2 PLKLYGM-----PLSPNVVRVATVLNEKGLDFEIVPVDLTTGAHKQPDFLALNPFGQIPALVDGDEVLFESRAINRYIAS   76 (216)
T ss_dssp             CEEEESC-----TTCHHHHHHHHHHHHTTCCEEEECCCSSTTSSCCCSGGGTCTTCCSCEEEETTEEEESHHHHHHHHHH
T ss_pred             ceEEEec-----CCCccHHHHHHHHHHcCCccEEEecCccccccCCHHHHHhCCCCCcCEEEECCEEeeCHHHHHHHHHH
Confidence            4788887     5899999999999999999999887532  11223445567788999999999999999888876543

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=97.76  E-value=0.00047  Score=48.75  Aligned_cols=60  Identities=17%  Similarity=0.273  Sum_probs=41.8

Q ss_pred             HhhhcCC-cEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee
Q 030327           82 DKVVTGN-KVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI  149 (179)
Q Consensus        82 ~~li~~~-~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI  149 (179)
                      +.+++.+ .++|+..+    +||++|+++...|.+.      ++.+..+|+++++++.    +..|...+|.+++
T Consensus        15 ~~~~~~~~~~lv~f~a----~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~----~~~~v~~~Pt~~~   81 (122)
T 3aps_A           15 EKVLQGKTHWVVDFYA----PWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQTC----QKAGIKAYPSVKL   81 (122)
T ss_dssp             HHTTTCSSCEEEEEEC----TTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHH----HHTTCCSSSEEEE
T ss_pred             HHHhcCCCeEEEEEEC----CCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCcCCHHHH----HHcCCCccceEEE
Confidence            3444444 35545444    6999999999888653      5788889998887643    3457778998855

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=97.76  E-value=0.00012  Score=55.02  Aligned_cols=66  Identities=18%  Similarity=0.299  Sum_probs=44.8

Q ss_pred             cCCcEEEEEe-eCCCCCCCchHHHHHHHH---Hh------cCCCeEEEEcCCCH-------HHHHHHHHhcCCCCcceEe
Q 030327           86 TGNKVVLFMK-GTKDFPQCGFSHTVVQIL---KS------LNAPFETVNILENE-------MLRQGLKEYSSWPTFPQLY  148 (179)
Q Consensus        86 ~~~~Vvlysk-~t~~~p~Cp~C~~ak~lL---~~------~gv~y~~vdV~~d~-------~~~~~L~~~sg~~tvP~Vf  148 (179)
                      +...|+|+.. .    +||++|++....|   .+      .++.+..+|+++++       +....+.+..|...+|.++
T Consensus        46 ~gk~vlv~F~ga----~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~  121 (154)
T 2ju5_A           46 DHKPIGLFFTGS----DWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQYKVTGFPELV  121 (154)
T ss_dssp             HCCCEEEEEECT----TTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHHHHHTTCCSSSEEE
T ss_pred             CCCeEEEEEeCC----CCCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccCCChhhHhhHHHHHHHcCCCCCCEEE
Confidence            3455666655 4    6999999988766   22      24556677776653       3445666667888999986


Q ss_pred             e---CCEEEe
Q 030327          149 I---EGEFFG  155 (179)
Q Consensus       149 I---dG~~IG  155 (179)
                      +   +|+.+.
T Consensus       122 ~~d~~G~~~~  131 (154)
T 2ju5_A          122 FIDAEGKQLA  131 (154)
T ss_dssp             EECTTCCEEE
T ss_pred             EEcCCCCEEE
Confidence            5   787776

>4f03_A Glutathione transferase; GST fold; 1.80A {Phanerochaete chrysosporium} PDB: 4g19_A*

Probab=97.75  E-value=0.00013  Score=57.78  Aligned_cols=78  Identities=10%  Similarity=0.071  Sum_probs=55.2

Q ss_pred             CcEEEEEeeC----CCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHH-----------hcCCCCcceEee--C
Q 030327           88 NKVVLFMKGT----KDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKE-----------YSSWPTFPQLYI--E  150 (179)
Q Consensus        88 ~~Vvlysk~t----~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~-----------~sg~~tvP~VfI--d  150 (179)
                      .+|++|-...    ...++||||.+|+-+|..+|++|+.+.|+-. +....+..           .+...+||++..  |
T Consensus         3 ~pi~lYd~~~~~~~~~~~~SP~~~kvr~~L~~kgi~y~~~~v~~~-~~~~~~~~~g~~~~~~~~~~~P~~~VPvL~~~d~   81 (253)
T 4f03_A            3 QPIVFYDIPSNERIKHSPWSPNTWKIRYALNYKGLKYKTEWVEYP-DIAGVVQKLGGKPTEKTPDGRDHYTLPVIYDPNT   81 (253)
T ss_dssp             CCEEEEECCCCGGGTTCCCCHHHHHHHHHHHHHTCCEEEEECCGG-GHHHHHHHHTCCCSEECTTCCEECCSCEEEETTT
T ss_pred             CCeEEeecCCCCCCCCCCcChhHHHHHHHHHHcCCCCEEEEEccc-cchhhhhhcCCCCchhhHhhCCCCccCeEEeCCC
Confidence            4689995422    2347899999999999999999999988532 12222222           123468999987  5


Q ss_pred             CEEEeecHHHHHHHHc
Q 030327          151 GEFFGGCDITVEAYKN  166 (179)
Q Consensus       151 G~~IGG~del~~l~~~  166 (179)
                      |..|.....+.++.++
T Consensus        82 g~~l~ES~aI~~YL~~   97 (253)
T 4f03_A           82 KKVVEDSAAIAKYLDE   97 (253)
T ss_dssp             TEEEESHHHHHHHHHH
T ss_pred             CEEEecHHHHHHHHHH
Confidence            7889888888776543

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=97.74  E-value=0.00012  Score=52.85  Aligned_cols=64  Identities=13%  Similarity=0.199  Sum_probs=43.1

Q ss_pred             CCcEEEEEeeCCCCC-------CCchHHHHHHHHHhc------CCCeEEEEc-------CCCHHHHHHHHHhcCCCCcce
Q 030327           87 GNKVVLFMKGTKDFP-------QCGFSHTVVQILKSL------NAPFETVNI-------LENEMLRQGLKEYSSWPTFPQ  146 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p-------~Cp~C~~ak~lL~~~------gv~y~~vdV-------~~d~~~~~~L~~~sg~~tvP~  146 (179)
                      ...|+|+..+    +       ||++|+.....|++.      ++.+..+|+       +.+.++.+    ..+...+|.
T Consensus        24 ~~~v~v~F~a----~~~~~~~~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~~~d~~~~~~~----~~~i~~~Pt   95 (123)
T 1wou_A           24 GKTIFAYFTG----SKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRK----NLKVTAVPT   95 (123)
T ss_dssp             TSEEEEEEEC----CBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHH----HHCCCSSSE
T ss_pred             CCEEEEEEEc----cCCCCCCCcCHHHHHhhHHHHHHHHHcCCCcEEEEEECCCchhhhchhHHHHH----HCCCCeeCE
Confidence            4556666665    7       999999999998763      466788888       44444433    357788999


Q ss_pred             Eee--CCEEEeecH
Q 030327          147 LYI--EGEFFGGCD  158 (179)
Q Consensus       147 VfI--dG~~IGG~d  158 (179)
                      +++  +|..+.|..
T Consensus        96 ~~~~~~~~~~~g~~  109 (123)
T 1wou_A           96 LLKYGTPQKLVESE  109 (123)
T ss_dssp             EEETTSSCEEEGGG
T ss_pred             EEEEcCCceEeccc
Confidence            855  445555543

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=97.74  E-value=0.00011  Score=56.08  Aligned_cols=60  Identities=20%  Similarity=0.167  Sum_probs=44.8

Q ss_pred             cEEEEEeeCCCCCCC--chHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCEEEee
Q 030327           89 KVVLFMKGTKDFPQC--GFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEFFGG  156 (179)
Q Consensus        89 ~Vvlysk~t~~~p~C--p~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~~IGG  156 (179)
                      .|+|+...    +||  +.|+.+..+|+++      ++.+..+|+|+++++.    ..+|-..+|.+  |-||+.++-
T Consensus        35 ~vlVdF~A----~wCr~gpCk~iaPvleela~e~~~~v~~~KVdvDe~~~la----~~ygV~siPTlilFkdG~~v~~  104 (137)
T 2qsi_A           35 IVVLFFRG----DAVRFPEAADLAVVLPELINAFPGRLVAAEVAAEAERGLM----ARFGVAVCPSLAVVQPERTLGV  104 (137)
T ss_dssp             EEEEEECC----CTTTCTTHHHHHHHHHHHHHTSTTTEEEEEECGGGHHHHH----HHHTCCSSSEEEEEECCEEEEE
T ss_pred             cEEEEEeC----CccCCCchhhHHhHHHHHHHHccCCcEEEEEECCCCHHHH----HHcCCccCCEEEEEECCEEEEE
Confidence            57777775    699  9999999999764      3567788887776654    44566678877  789988864

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=97.73  E-value=0.00027  Score=51.61  Aligned_cols=58  Identities=19%  Similarity=0.261  Sum_probs=40.8

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee---CCEE
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI---EGEF  153 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI---dG~~  153 (179)
                      ..++|+...    +||++|+++...|++.      ++.+..+|+++++++.    +..|...+|.+++   +|+.
T Consensus        39 k~~lv~f~a----~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~----~~~~v~~~Pt~~~~~~~G~~  105 (136)
T 2l5l_A           39 KPAIVDFYA----DWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELA----GAFGIRSIPSILFIPMEGKP  105 (136)
T ss_dssp             SCEEEEEEC----TTSHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHH----HHTTCCSSCEEEEECSSSCC
T ss_pred             CEEEEEEEC----CcCHHHHHHHHHHHHHHHHhcCCEEEEEEeCCCCHHHH----HHcCCCCCCEEEEECCCCcE
Confidence            345554444    6999999998888653      3678888988877544    3457778998754   6765

>2c3n_A Glutathione S-transferase theta 1; glutathione transferase, polymorphism; 1.5A {Homo sapiens} PDB: 2c3q_A* 2c3t_A

Probab=97.72  E-value=0.00011  Score=59.22  Aligned_cols=74  Identities=12%  Similarity=0.033  Sum_probs=59.5

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC--HHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN--EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d--~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      ..|.+|...     .||+|++++-+|.+.|++|+.+.++-.  +....++.+.+...++|.+..||..+.....+.++.+
T Consensus         8 ~~~~ly~~~-----~sp~~rkv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~gkVPvL~d~g~~l~ES~aI~~YL~   82 (247)
T 2c3n_A            8 MGLELYLDL-----LSQPCRAVYIFAKKNDIPFELRIVDLIKGQHLSDAFAQVNPLKKVPALKDGDFTLTESVAILLYLT   82 (247)
T ss_dssp             -CEEEEECT-----TSHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSHHHHHHCTTCCSCEEEETTEEEECHHHHHHHHH
T ss_pred             cceEEeecC-----CChhHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCcCcEEEECCEEEEcHHHHHHHHH
Confidence            468999995     999999999999999999999888632  2233456667788899999999999999888877654


Q ss_pred             c
Q 030327          166 N  166 (179)
Q Consensus       166 ~  166 (179)
                      +
T Consensus        83 ~   83 (247)
T 2c3n_A           83 R   83 (247)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=97.72  E-value=0.00015  Score=54.17  Aligned_cols=61  Identities=13%  Similarity=0.016  Sum_probs=43.4

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCEEEe
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEFFG  155 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~~IG  155 (179)
                      ...|+|+...    +||++|+.....|++.      ++.+..+|+++++++    .+..|...+|.+  |.+|+.+.
T Consensus        23 ~k~vlv~F~a----~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~----~~~~~i~~~Pt~~~~~~G~~v~   91 (142)
T 1qgv_A           23 DRVVVIRFGH----DWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDF----NKMYELYDPCTVMFFFRNKHIM   91 (142)
T ss_dssp             SSEEEEEEEC----TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTT----TTSSCSCSSCEEEEEETTEEEE
T ss_pred             CCEEEEEEEC----CCCHHHHHHHHHHHHHHHHhCCCeEEEEEccccCHHH----HHHcCCCCCCEEEEEECCcEEE
Confidence            4455555554    7999999999888653      366778888877543    444577789988  55888764

>3q18_A GSTO-2, glutathione S-transferase omega-2; glutathione transferase, dehydroascorbate reductase, reductase; 1.70A {Homo sapiens} PDB: 3q19_A* 3qag_A*

Probab=97.72  E-value=4.7e-05  Score=60.61  Aligned_cols=74  Identities=18%  Similarity=0.216  Sum_probs=59.8

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee-CCEEEeecHHHHHHHH
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYI-EGEFFGGCDITVEAYK  165 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI-dG~~IGG~del~~l~~  165 (179)
                      ...++||..     +.||+|.+++-+|...|++|+.+.|+-.. ..+++.+.....++|.+.. ||..+.....+.++..
T Consensus        21 ~~~~~Ly~~-----~~sp~~~~v~~~L~~~gi~~e~~~v~~~~-~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~   94 (239)
T 3q18_A           21 EGLIRIYSM-----RFCPYSHRTRLVLKAKDIRHEVVNINLRN-KPEWYYTKHPFGHIPVLETSQSQLIYESVIACEYLD   94 (239)
T ss_dssp             TTCEEEEEC-----TTCHHHHHHHHHHHHTTCCEEEEEBCSSS-CCGGGGGTSTTCCSCEEECTTCCEECSHHHHHHHHH
T ss_pred             CCeEEEEeC-----CCChHHHHHHHHHHHcCCCcEEEecCccc-CCHHHHhcCCCCCCCEEEeCCCceeecHHHHHHHHH
Confidence            456999999     58999999999999999999999886432 1234566677889999999 9999998888877654


Q ss_pred             c
Q 030327          166 N  166 (179)
Q Consensus       166 ~  166 (179)
                      +
T Consensus        95 ~   95 (239)
T 3q18_A           95 D   95 (239)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=97.71  E-value=0.00015  Score=54.95  Aligned_cols=24  Identities=13%  Similarity=0.152  Sum_probs=19.3

Q ss_pred             hcCCCCcceEeeCCEEEeecHHHH
Q 030327          138 YSSWPTFPQLYIEGEFFGGCDITV  161 (179)
Q Consensus       138 ~sg~~tvP~VfIdG~~IGG~del~  161 (179)
                      ..|...+|.++|||+.+-|.....
T Consensus       139 ~~gv~gtPt~~i~g~~~~G~~~~~  162 (175)
T 3gyk_A          139 KLGFNGTPSFVVEDALVPGFVEQS  162 (175)
T ss_dssp             HHTCCSSSEEEETTEEECSCCCHH
T ss_pred             HcCCccCCEEEECCEEeeCCCCHH
Confidence            348889999999999998875443

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=97.71  E-value=7.6e-05  Score=54.45  Aligned_cols=60  Identities=18%  Similarity=0.278  Sum_probs=42.6

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CCEEEe
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEFFG  155 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG~~IG  155 (179)
                      ..++|+..+    +||++|++....|++.      ++.+..+|++++++    +.+..|...+|.+++  +|+.++
T Consensus        41 k~vlv~F~a----~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~~~~~~----l~~~~~v~~~Pt~~~~~~G~~~~  108 (128)
T 2o8v_B           41 GAILVDFWA----EWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPG----TAPKYGIRGIPTLLLFKNGEVAA  108 (128)
T ss_dssp             SEEEEEEEC----SSCHHHHHTHHHHHHHHHHTTTTEEEEEEETTTCCT----TSGGGTCCSSSEEEEEETTEEEE
T ss_pred             CEEEEEEEC----CCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHH----HHHHcCCCccCEEEEEeCCEEEE
Confidence            445555554    6999999988877653      36677888877754    334457788999977  998654

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=97.71  E-value=0.00014  Score=52.49  Aligned_cols=60  Identities=17%  Similarity=0.249  Sum_probs=43.1

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CCEEEe
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEFFG  155 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG~~IG  155 (179)
                      ..++|+...    +||++|++....|.+.      ++.+..+|++.++++.    +..|...+|.+++  +|+.+.
T Consensus        43 k~vlv~F~a----~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~----~~~~v~~~Pt~~~~~~G~~~~  110 (128)
T 3ul3_B           43 TVIVLYFFA----KWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNESLA----RKFSVKSLPTIILLKNKTMLA  110 (128)
T ss_dssp             SEEEEEEEC----TTCHHHHHHHHHHHHHHHHHGGGEEEEEEEGGGCHHHH----HHTTCCSSSEEEEEETTEEEE
T ss_pred             CEEEEEEEC----CCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHHH----HHcCCCCcCEEEEEECCEEEE
Confidence            345555544    6999999999888654      3567788888777543    4457778998866  898775

>3rbt_A Glutathione transferase O1; glutathione S-transferase omega3; 2.20A {Bombyx mori}

Probab=97.70  E-value=9e-05  Score=59.49  Aligned_cols=74  Identities=15%  Similarity=0.224  Sum_probs=59.9

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee-CCE---EEeecHHHHH
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYI-EGE---FFGGCDITVE  162 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI-dG~---~IGG~del~~  162 (179)
                      ...++||..     +.||+|.+++-+|...|++|+.+.|+-.. ..+++.+.+...++|.+.. ||.   .+.....+.+
T Consensus        24 ~~~~~Ly~~-----~~sp~~~~v~~~L~~~gi~ye~~~v~~~~-~~~~~~~~nP~g~vP~L~~~~g~~~~~l~eS~aI~~   97 (246)
T 3rbt_A           24 TDKLRLYHV-----DMNPYGHRVLLVLEAKRIKYEVYRLDPLR-LPEWFRAKNPRLKIPVLEIPTDQGDRFLFESVVICD   97 (246)
T ss_dssp             CSSEEEEEC-----TTCHHHHHHHHHHHHTTBCEEEEECCSSS-CCHHHHHHCTTCBSCEEEECCTTSCEEECCHHHHHH
T ss_pred             CCceEEEec-----CCCccHHHHHHHHHHcCCCceEEEeCccc-CCHHHHHhCCCCCCCEEEecCCCCceeeeCHHHHHH
Confidence            456899998     48999999999999999999999886432 2234667778889999999 888   8888888777


Q ss_pred             HHHc
Q 030327          163 AYKN  166 (179)
Q Consensus       163 l~~~  166 (179)
                      +.++
T Consensus        98 yL~~  101 (246)
T 3rbt_A           98 YLDE  101 (246)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6543

>2hnl_A Glutathione S-transferase 1; prostaglandin synthase, river BLI onchocerca volvulus, immune modulation; HET: GSH; 2.00A {Onchocerca volvulus}

Probab=97.70  E-value=0.00014  Score=57.52  Aligned_cols=73  Identities=16%  Similarity=0.150  Sum_probs=60.3

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHc
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKN  166 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~  166 (179)
                      +..++||..     +.||+|.+++-+|...|++|+.+.++.  +-..++.+.+...++|.+..||..+.+...+.++.++
T Consensus        25 m~~~~Ly~~-----~~s~~~~~vr~~L~~~gi~ye~~~v~~--~~~~~~~~~nP~g~vPvL~~~g~~l~eS~aI~~YL~~   97 (225)
T 2hnl_A           25 MEKYTLTYF-----NGRGRAEVIRLLFALANVSYEDNRITR--DEWKYLKPRTPFGHVPMLNVSGNVLGESHAIELLLGG   97 (225)
T ss_dssp             CCCEEEEEE-----SSSGGGHHHHHHHHHHTCCCEEEEECH--HHHHHHGGGSSSSCSCEEEETTEEEECHHHHHHHHHH
T ss_pred             CCCeEEEEc-----CCCCchHHHHHHHHHCCCCeeEEEeCh--hhhHHhccCCCCCCCCEEEECCEEEecHHHHHHHHHH
Confidence            346899998     489999999999999999999998863  2235666777788999999999999998888776543

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=97.70  E-value=9.7e-06  Score=58.10  Aligned_cols=74  Identities=16%  Similarity=0.297  Sum_probs=48.9

Q ss_pred             CHHHHHHHHhhhc-CCcEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE
Q 030327           74 TPELKSTLDKVVT-GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQL  147 (179)
Q Consensus        74 ~~~~~~~l~~li~-~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V  147 (179)
                      .++.++.+..... ...++|+..+    +||++|+++...|++.     ++.+..+|++.++++.+.    .|...+|.+
T Consensus        22 ~~~~~~~l~~~~~~~~~~vv~f~~----~~C~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~----~~v~~~Pt~   93 (130)
T 1wmj_A           22 KDEFDAQMTKAKEAGKVVIIDFTA----SWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEK----YNVEAMPTF   93 (130)
T ss_dssp             SHHHHHHHHHHHTTTCBCBEECCS----SSCSCSSSSHHHHHHHHHHCTTBCCEECCTTTSGGGHHH----HTCCSSCCC
T ss_pred             HHHHHHHHHHHhhcCCEEEEEEEC----CCChhHHHHHHHHHHHHHHCCCCEEEEEeccchHHHHHH----cCCCccceE
Confidence            3456666665543 3344444444    6999999888777653     678888888877655433    366678887


Q ss_pred             ee--CCEEEe
Q 030327          148 YI--EGEFFG  155 (179)
Q Consensus       148 fI--dG~~IG  155 (179)
                      ++  +|+.+.
T Consensus        94 ~~~~~g~~~~  103 (130)
T 1wmj_A           94 LFIKDGAEAD  103 (130)
T ss_dssp             CBCTTTTCCB
T ss_pred             EEEeCCeEEE
Confidence            66  887654

>3m3m_A Glutathione S-transferase; PSI-II, structural genomics, protein structure initiative, N SGX research center for structural genomics; HET: GSH; 1.75A {Pseudomonas fluorescens}

Probab=97.70  E-value=0.00012  Score=56.75  Aligned_cols=73  Identities=11%  Similarity=0.145  Sum_probs=59.4

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCC--CHHHHHHHHHhcCCCCcceEee-CCEEEeecHHHHHHHH
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE--NEMLRQGLKEYSSWPTFPQLYI-EGEFFGGCDITVEAYK  165 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~--d~~~~~~L~~~sg~~tvP~VfI-dG~~IGG~del~~l~~  165 (179)
                      .+.||..     +.||+|.+++-+|...|++|+.+.++-  .+....++.+.+...++|.+.+ ||..+.+...+.++.+
T Consensus         3 ~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~d~g~~l~eS~aI~~yL~   77 (210)
T 3m3m_A            3 LYKVYGD-----YRSGNCYKIKLMLNLLGLPYEWQAVDILGGDTQTEAFLAKNPNGKIPVLELEDGTCLWESNAILNFLA   77 (210)
T ss_dssp             CEEEEEC-----TTSHHHHHHHHHHHHTTCCEEEEECCTTTTTTSSHHHHTTCTTCCSCEEEETTSCEEECHHHHHHHHH
T ss_pred             eEEEeCC-----CCCCcHHHHHHHHHHcCCCCEEEEecCCCccccCHHHHhhCCCCCCCEEEecCCEEEecHHHHHHHHh
Confidence            4788988     589999999999999999999998863  2233456667777889999996 8888998888887765


Q ss_pred             c
Q 030327          166 N  166 (179)
Q Consensus       166 ~  166 (179)
                      +
T Consensus        78 ~   78 (210)
T 3m3m_A           78 D   78 (210)
T ss_dssp             T
T ss_pred             c
Confidence            5

>4dej_A Glutathione S-transferase related protein; transferase-like protein, transcription regulation; 2.90A {Idiomarina loihiensis}

Probab=97.68  E-value=8.8e-05  Score=59.31  Aligned_cols=73  Identities=15%  Similarity=0.143  Sum_probs=59.6

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCC-CCcceEeeCCEEEeecHHHHHHHHc
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSW-PTFPQLYIEGEFFGGCDITVEAYKN  166 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~-~tvP~VfIdG~~IGG~del~~l~~~  166 (179)
                      ..+.||..     +.||+|.+++-+|...|++|+.+.|+.. ....++.+.+.. .++|.+..||..+.+...+.++.++
T Consensus        11 ~~~~Ly~~-----~~sp~~~~vr~~L~~~gi~~e~~~v~~~-~~~~~~~~~nP~~g~vPvL~~~g~~l~eS~aI~~YL~~   84 (231)
T 4dej_A           11 SVMTLYSG-----KDDLKSHQVRLVLAEKGVGVEITYVTDE-STPEDLLQLNPYPEAKPTLVDRELVLYNAQIIMEYLDE   84 (231)
T ss_dssp             SSCEEEEC-----SSCHHHHHHHHHHHHHTCBCEEEECCSS-CCCHHHHHHCCSSSCCSEEEETTEEEESHHHHHHHHHH
T ss_pred             ceEEEEcC-----CCChHHHHHHHHHHHcCCCcEEEEcCcc-cCCHHHHHhCCCCCCCCEEEECCEEEEcHHHHHHHHHH
Confidence            34889998     4999999999999999999999988644 222455667777 8999999999999998888876543

>1r5a_A Glutathione transferase; glutathione S-transferase, GST, GSH, mosquito, detoxification, xenobiotics; HET: GTS; 2.50A {Anopheles cracens} SCOP: a.45.1.1 c.47.1.5

Probab=97.68  E-value=0.00016  Score=56.56  Aligned_cols=72  Identities=14%  Similarity=0.167  Sum_probs=58.5

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC--HHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN--EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d--~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      .++||..     +.||+|.+++-+|...|++|+.+.++-.  +....++.+.+...++|.+..||..+.+...+.++..
T Consensus         2 ~~~Ly~~-----~~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~yL~   75 (218)
T 1r5a_A            2 TTVLYYL-----PASPPCRSVLLLAKMIGVELDLKVLNIMEGEQLKPDFVELNPQHCIPTMDDHGLVLWESRVILSYLV   75 (218)
T ss_dssp             CEEEEEC-----TTCHHHHHHHHHHHHTTCCEEEEECCTTTTGGGSHHHHTTCTTCCSSEEEETTEEEECHHHHHHHHH
T ss_pred             eEEEEeC-----CCChhHHHHHHHHHHcCCCCeEEecCcccccccCHHHHhhCCCCCcCEEEECCEEEEcHHHHHHHHH
Confidence            3678888     5899999999999999999999988642  2333566677777899999999999999888777654

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=97.67  E-value=0.0005  Score=49.94  Aligned_cols=55  Identities=18%  Similarity=0.270  Sum_probs=39.7

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI  149 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI  149 (179)
                      ...++|+...    +||++|+.....|.+.      ++.+..+|++.++++.    +..|...+|.+++
T Consensus        51 ~k~vlv~f~a----~wC~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~v~~~Pt~~~  111 (141)
T 3hxs_A           51 DKPAIVDFYA----DWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELA----RDFGIQSIPTIWF  111 (141)
T ss_dssp             SSCEEEEEEC----TTCTTHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHH----HHTTCCSSSEEEE
T ss_pred             CCEEEEEEEC----CCCHHHHHHHHHHHHHHHHhcCceEEEEEECCCCHHHH----HHcCCCCcCEEEE
Confidence            3456665554    6999999998888653      3668888888887643    3457778998865

>3f6d_A Adgstd4-4, glutathione transferase GST1-4; HET: GTX; 1.70A {Anopheles dirus} PDB: 3f63_A* 1jlw_A* 3g7i_A* 3g7j_A*

Probab=97.67  E-value=9.4e-05  Score=57.70  Aligned_cols=70  Identities=9%  Similarity=0.025  Sum_probs=57.3

Q ss_pred             EEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCC--CHHHHHHHHHhcCCCCcceEee-CCEEEeecHHHHHHHH
Q 030327           91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE--NEMLRQGLKEYSSWPTFPQLYI-EGEFFGGCDITVEAYK  165 (179)
Q Consensus        91 vlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~--d~~~~~~L~~~sg~~tvP~VfI-dG~~IGG~del~~l~~  165 (179)
                      .||..     +.||+|.+++-+|...|++|+.+.++-  .+....++.+.+...++|.+.. ||..+.+...+.++..
T Consensus         2 ~Ly~~-----~~s~~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~g~~l~eS~aI~~yL~   74 (219)
T 3f6d_A            2 DFYYL-----PGSAPCRAVQMTAAAVGVELNLKLTNLMAGEHMKPEFLKLNPQHCIPTLVDEDGFVLWESRAIQIYLV   74 (219)
T ss_dssp             EEEEC-----TTCHHHHHHHHHHHHHTCCCEEEECCTTTTGGGSHHHHHHCTTCCSCEEECTTSCEEESHHHHHHHHH
T ss_pred             EEEeC-----CCCCchHHHHHHHHHcCCCceEEEccCcccccCCHHHHhhCCCCccCeEEeCCCCEEEcHHHHHHHHH
Confidence            57777     599999999999999999999988853  2333456777788889999999 9999999888877654

>3m8n_A Possible glutathione S-transferase; PSI-II, structural genomics, protein structure initiative, nysgxrc; 2.04A {Rhodopseudomonas palustris}

Probab=97.66  E-value=0.00012  Score=57.64  Aligned_cols=73  Identities=18%  Similarity=0.160  Sum_probs=59.1

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC--HHHHHHHHHhcCCCCcceEee-CCEEEeecHHHHHHHH
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN--EMLRQGLKEYSSWPTFPQLYI-EGEFFGGCDITVEAYK  165 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d--~~~~~~L~~~sg~~tvP~VfI-dG~~IGG~del~~l~~  165 (179)
                      .++||..     +.||+|.+++-+|...|++|+.+.|+-.  +....++.+.+...++|.+.+ ||..|.+...+.++..
T Consensus         3 ~~~Ly~~-----~~sp~~~~vr~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~g~~l~eS~aI~~yL~   77 (225)
T 3m8n_A            3 LYKLYSM-----QRSGNSYKVRLALALLDAPYRAVEVDILRGESRTPDFLAKNPSGQVPLLETAPGRYLAESNAILWYLA   77 (225)
T ss_dssp             CEEEEEC-----TTCHHHHHHHHHHHHTTCCEEEEECCGGGTTTSSHHHHTTCTTCCSSEEECSTTCEEECHHHHHHHHH
T ss_pred             ceEEecC-----CCCCCHHHHHHHHHHcCCCeEEEEeCCCCCccCCHHHHHhCCCCCCCEEEeCCCCEEEcHHHHHHHHH
Confidence            3788988     5999999999999999999999988532  223345667778889999997 7889999888888766


Q ss_pred             c
Q 030327          166 N  166 (179)
Q Consensus       166 ~  166 (179)
                      +
T Consensus        78 ~   78 (225)
T 3m8n_A           78 V   78 (225)
T ss_dssp             T
T ss_pred             c
Confidence            5

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=97.66  E-value=0.00012  Score=58.38  Aligned_cols=70  Identities=13%  Similarity=0.230  Sum_probs=46.0

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhc---CCCeEEEEcCC---------------------------------------
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSL---NAPFETVNILE---------------------------------------  127 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~---gv~y~~vdV~~---------------------------------------  127 (179)
                      |++|+.     +|||||++....|+++   ++.+..+.+..                                       
T Consensus        90 vv~F~d-----~~Cp~C~~~~~~l~~l~~~~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~~~~~  164 (216)
T 1eej_A           90 ITVFTD-----ITCGYCHKLHEQMADYNALGITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPASCD  164 (216)
T ss_dssp             EEEEEC-----TTCHHHHHHHTTHHHHHHTTEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCCCCS
T ss_pred             EEEEEC-----CCCHHHHHHHHHHHHHHhCCcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCCCChhHHH
Confidence            555655     7999999988877664   67766665421                                       


Q ss_pred             -CHHHHHHHHHhcCCCCcceEee-CCEEEeec---HHHHHHH
Q 030327          128 -NEMLRQGLKEYSSWPTFPQLYI-EGEFFGGC---DITVEAY  164 (179)
Q Consensus       128 -d~~~~~~L~~~sg~~tvP~VfI-dG~~IGG~---del~~l~  164 (179)
                       .-+....+.+..|...+|.+|+ ||+.+.|+   +++.++.
T Consensus       165 ~~v~~~~~l~~~~gV~gtPt~v~~dG~~~~G~~~~~~l~~~l  206 (216)
T 1eej_A          165 VDIADHYALGVQLGVSGTPAVVLSNGTLVPGYQPPKEMKEFL  206 (216)
T ss_dssp             CCHHHHHHHHHHHTCCSSSEEECTTSCEEESCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCccCEEEEcCCeEecCCCCHHHHHHHH
Confidence             1111233445568999999998 88888886   3444443

>4ags_A Thiol-dependent reductase 1; transferase, leishmaniasis, DE-gluathionylation; HET: MSE GSH; 2.30A {Leishmania infantum}

Probab=97.66  E-value=0.00011  Score=64.20  Aligned_cols=77  Identities=18%  Similarity=0.317  Sum_probs=61.9

Q ss_pred             hcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCC---EEEeecHHHH
Q 030327           85 VTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEG---EFFGGCDITV  161 (179)
Q Consensus        85 i~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG---~~IGG~del~  161 (179)
                      +.+..++||..     +.||+|.+++-+|..+|++|+.+.|+-.+...+++.+.+...++|.+..+|   ..+.....+.
T Consensus        22 m~~~~~~Ly~~-----~~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~nP~g~vP~L~~~~~~g~~l~eS~aI~   96 (471)
T 4ags_A           22 MAARALKLYVS-----ATCPFCHRVEIVAREKQVSYDRVAVGLREEMPQWYKQINPRETVPTLEVGNADKRFMFESMLIA   96 (471)
T ss_dssp             ---CCEEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEECCCGGGCCHHHHHHCTTCCSCEEEECSSSCEEEESHHHHH
T ss_pred             cCCCceEEECC-----CCCchHHHHHHHHHHcCCCCEEEEeCCCCCccHHHHhhCCCCccCeEEECCcCeEEEecHHHHH
Confidence            34567999998     499999999999999999999999875433445677778889999999987   8898888887


Q ss_pred             HHHHc
Q 030327          162 EAYKN  166 (179)
Q Consensus       162 ~l~~~  166 (179)
                      ++.++
T Consensus        97 ~yL~~  101 (471)
T 4ags_A           97 QYLDN  101 (471)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76554

>2gsq_A Squid GST, glutathione S-transferase; squid digestive gland, sigma class; HET: GBI; 2.20A {Ommastrephes sloani} SCOP: a.45.1.1 c.47.1.5 PDB: 1gsq_A*

Probab=97.66  E-value=0.00012  Score=56.41  Aligned_cols=71  Identities=17%  Similarity=0.132  Sum_probs=58.1

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHc
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKN  166 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~  166 (179)
                      .+.+|..     +.||+|.+++-+|...|++|+.+.++.+.  ..++++.+...++|.+..||..|.+...+.++.++
T Consensus         2 ~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~~--~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~~   72 (202)
T 2gsq_A            2 KYTLHYF-----PLMGRAELCRFVLAAHGEEFTDRVVEMAD--WPNLKATMYSNAMPVLDIDGTKMSQSMCIARHLAR   72 (202)
T ss_dssp             CEEEEEC-----SSSGGGHHHHHHHHHTTCCCEEEECCTTT--HHHHGGGSGGGSSCEEEETTEEECCHHHHHHHHHH
T ss_pred             CcEEEEc-----CCCchhHHHHHHHHHcCCCeeEEEeCHHH--HHhhcccCCCCCCCEEEECCEEEecHHHHHHHHHH
Confidence            4778888     48999999999999999999999987431  24566666777999999999999998888876543

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=97.66  E-value=0.00051  Score=50.60  Aligned_cols=60  Identities=18%  Similarity=0.313  Sum_probs=42.7

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CCEEEe
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEFFG  155 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG~~IG  155 (179)
                      ..++|+...    +||++|++....|++.      ++.+..+|+++++++.+    ..|...+|.+++  +|+.+.
T Consensus        56 k~vlv~F~a----~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~l~~----~~~v~~~Pt~~~~~~G~~~~  123 (148)
T 3p2a_A           56 LPMVIDFWA----PWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPALST----RFRIRSIPTIMLYRNGKMID  123 (148)
T ss_dssp             SCEEEEEEC----SSCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHH----HTTCCSSSEEEEEETTEEEE
T ss_pred             CcEEEEEEC----CCCHHHHHHHHHHHHHHHHcCCceEEEEEECcCCHHHHH----HCCCCccCEEEEEECCeEEE
Confidence            345555544    6999999999888653      46688888888876543    446778888755  887664

>1ljr_A HGST T2-2, glutathione S-transferase; HET: GSH; 3.20A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 2ljr_A 3ljr_A*

Probab=97.66  E-value=0.00012  Score=58.64  Aligned_cols=71  Identities=14%  Similarity=0.071  Sum_probs=58.1

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC--HHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN--EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d--~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      ++||..     +.||+|.+++-+|...|++|+.+.++-.  +....++.+.+...++|.+..||..|.+...+.++.+
T Consensus         3 ~~Ly~~-----~~sp~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~d~g~~l~eS~aI~~YL~   75 (244)
T 1ljr_A            3 LELFLD-----LVSQPSRAVYIFAKKNGIPLELRTVDLVKGQHKSKEFLQINSLGKLPTLKDGDFILTESSAILIYLS   75 (244)
T ss_dssp             CEEEEC-----TTSHHHHHHHHHHHHTTCCCEEEECCTTTTGGGSHHHHTTCTTCCSCEEEETTEEEECHHHHHHHHH
T ss_pred             EEEEec-----CCCcchHHHHHHHHHcCCCCeEEEecccccccCCHHHHHhCCCCcCcEEEECCEEEEchHHHHHHHH
Confidence            578887     5899999999999999999999888632  2334566677778899999999999999888877654

>1z9h_A Membrane-associated prostaglandin E synthase-2; membran associated protein, indomethacin, isomerase; HET: IMN; 2.60A {Macaca fascicularis} SCOP: a.45.1.1 c.47.1.5 PDB: 2pbj_A*

Probab=97.66  E-value=7.5e-05  Score=61.71  Aligned_cols=71  Identities=20%  Similarity=0.369  Sum_probs=55.5

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeC--C--EEEeecHHHHH
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIE--G--EFFGGCDITVE  162 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfId--G--~~IGG~del~~  162 (179)
                      ...++||+.     +.||+|.+++-+|..+|++|+.++|+...  +.++ +.++..++|++.++  |  ..+.....+.+
T Consensus        12 ~~~~~Ly~~-----~~sp~~~~v~~~L~~~gi~~~~~~v~~~~--~~~~-~~~p~~~vP~l~~~~~g~~~~l~eS~aI~~   83 (290)
T 1z9h_A           12 RLQLTLYQY-----KTCPFCSKVRAFLDFHALPYQVVEVNPVL--RAEI-KFSSYRKVPILVAQEGESSQQLNDSSVIIS   83 (290)
T ss_dssp             -CEEEEEEC-----TTCHHHHHHHHHHHHTTCCEEEEECCTTT--CGGG-TTCSCCSSCEEEEEETTEEEEECSHHHHHH
T ss_pred             CCCEEEEeC-----CCChHHHHHHHHHHHcCCCeEEEECChhh--HHHH-HHcCCCCCCEEEECCCCCeEEecCHHHHHH
Confidence            456899998     59999999999999999999999996321  1123 46788999999985  3  67888888887


Q ss_pred             HHH
Q 030327          163 AYK  165 (179)
Q Consensus       163 l~~  165 (179)
                      +..
T Consensus        84 yL~   86 (290)
T 1z9h_A           84 ALK   86 (290)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            665

>3ein_A GST class-theta, glutathione S-transferase 1-1; delta-class GST; HET: GSH; 1.13A {Drosophila melanogaster} PDB: 3mak_A* 3f6f_A 3gh6_A* 1jlv_A*

Probab=97.63  E-value=0.00012  Score=56.65  Aligned_cols=71  Identities=14%  Similarity=0.105  Sum_probs=57.7

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCC--CHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE--NEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~--d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      +.||..     +.||+|.+++-+|...|++|+.+.|+-  .+....++.+.+...++|.+..||..+.+...+.++..
T Consensus         2 ~~Ly~~-----~~s~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~   74 (209)
T 3ein_A            2 VDFYYL-----PGSSPCRSVIMTAKAVGVELNKKLLNLQAGEHLKPEFLKINPQHTIPTLVDNGFALWESRAIQVYLV   74 (209)
T ss_dssp             CEEEEC-----TTCHHHHHHHHHHHHHTCCCEEEECCGGGTGGGSHHHHTTCTTCCSCEEEETTEEEECHHHHHHHHH
T ss_pred             eEEecC-----CCCccHHHHHHHHHHcCCCcEEEEcccccCCcCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHHH
Confidence            357777     599999999999999999999988753  23334567777778899999999999999888777644

>3ibh_A GST-II, saccharomyces cerevisiae GTT2; glutathione S-transferase, transferase; HET: GSH; 2.10A {Saccharomyces cerevisiae} PDB: 3erf_A* 3erg_A*

Probab=97.63  E-value=0.0001  Score=57.81  Aligned_cols=74  Identities=19%  Similarity=0.230  Sum_probs=58.8

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhcCC--CeEEEEcCC--CHHHHHHHHHhcCCCCcceEe-eCCEEEeecHHHHH
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLNA--PFETVNILE--NEMLRQGLKEYSSWPTFPQLY-IEGEFFGGCDITVE  162 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv--~y~~vdV~~--d~~~~~~L~~~sg~~tvP~Vf-IdG~~IGG~del~~  162 (179)
                      .+++||..     +.||+|.+++-+|...|+  +|+.++|+-  .+....++.+.+...++|.+. .||..+.+...+.+
T Consensus        17 ~~~~Ly~~-----~~sp~~~~v~~~L~~~gi~~~~~~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~   91 (233)
T 3ibh_A           17 QKMIIYDT-----PAGPYPARVRIALAEKNMLSSVQFVRINLWKGEHKKPEFLAKNYSGTVPVLELDDGTLIAECTAITE   91 (233)
T ss_dssp             --CEEEEC-----TTCHHHHHHHHHHHHTTCGGGCEEEECCGGGTGGGSHHHHHHCTTCCSCEEECTTCCEEESHHHHHH
T ss_pred             cceEEecC-----CCCCccHHHHHHHHhcCCCCCceEEEeccccccccChHHhccCCCCccceEEecCCeEEecHHHHHH
Confidence            46899998     589999999999999999  999888753  233445667778888999999 78888998888777


Q ss_pred             HHHc
Q 030327          163 AYKN  166 (179)
Q Consensus       163 l~~~  166 (179)
                      +..+
T Consensus        92 yL~~   95 (233)
T 3ibh_A           92 YIDA   95 (233)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=97.62  E-value=0.00013  Score=57.65  Aligned_cols=48  Identities=17%  Similarity=0.272  Sum_probs=39.1

Q ss_pred             CCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCE
Q 030327          101 PQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGE  152 (179)
Q Consensus       101 p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~  152 (179)
                      +||++|+++...|++.     ++.+..+|+++++++.    +..|...+|.+++||+
T Consensus       146 ~wC~~C~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~----~~~~v~~~Pt~~~~G~  198 (229)
T 2ywm_A          146 TSCGYCPSAAVMAWDFALANDYITSKVIDASENQDLA----EQFQVVGVPKIVINKG  198 (229)
T ss_dssp             TTCTTHHHHHHHHHHHHHHCTTEEEEEEEGGGCHHHH----HHTTCCSSSEEEEGGG
T ss_pred             CCCcchHHHHHHHHHHHHHCCCeEEEEEECCCCHHHH----HHcCCcccCEEEECCE
Confidence            6999999999988764     5778888998877653    3457789999999987

>2wb9_A Glutathione transferase sigma class; thioredoxin fold; HET: GSH; 1.59A {Fasciola hepatica} PDB: 2wdu_A*

Probab=97.62  E-value=0.0002  Score=55.52  Aligned_cols=72  Identities=13%  Similarity=0.117  Sum_probs=58.4

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCC-----EEEeecHHHH
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEG-----EFFGGCDITV  161 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG-----~~IGG~del~  161 (179)
                      ...+.||..     +.|++|.+++-+|...|++|+.+.++.+.  ..+++..+...++|++..+|     ..+.+...+.
T Consensus         3 m~~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~~--~~~~~~~~P~g~vP~L~~~~~~g~~~~l~eS~aI~   75 (211)
T 2wb9_A            3 KQHFKLWYF-----QFRGRAEPIRLLLTCAGVKFEDYQFTMDQ--WPTIKPTLPGGRVPLLDVTGPDGKLRRYQESMAIA   75 (211)
T ss_dssp             CCEEEEEEE-----SSCGGGHHHHHHHHHTTCCCEEEEECTTT--HHHHGGGSGGGCSCEEEEECTTSCEEEEESHHHHH
T ss_pred             CCceEEEEe-----CCCCchHHHHHHHHHcCCCceEEEechhh--HHHhCcCCCCCCCCEEEECCCCccceeecCHHHHH
Confidence            346889998     48999999999999999999999987422  24566677778999999988     8899888877


Q ss_pred             HHHH
Q 030327          162 EAYK  165 (179)
Q Consensus       162 ~l~~  165 (179)
                      ++..
T Consensus        76 ~yL~   79 (211)
T 2wb9_A           76 RLLA   79 (211)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7654

>3ic8_A Uncharacterized GST-like proteinprotein; glutathione, transferase, PSI, MCSG, structural genomics; 2.40A {Pseudomonas syringae PV}

Probab=97.62  E-value=8.9e-05  Score=61.73  Aligned_cols=71  Identities=14%  Similarity=0.239  Sum_probs=58.5

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhc-CCCCcceEeeCCEEEeecHHHHHHHH
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYS-SWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~s-g~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      .++||..     +.||+|.+++-+|..+|++|+.++++-.. ...++..++ +..++|.+..||..+.+...+.++.+
T Consensus         3 ~~~Ly~~-----~~sp~~~kvr~~L~~~gi~ye~~~v~~~~-~~~~~~~~n~P~g~vPvL~~~g~~l~eS~aI~~yL~   74 (310)
T 3ic8_A            3 ELILHHY-----PTSLFAEKARLMLGFKGVNWRSVTIPSIM-PKPDLTALTGGYRKTPVLQIGADIYCDTALMARRLE   74 (310)
T ss_dssp             CEEEEEC-----TTCGGGHHHHHHHHHHTCEEEEEECCSSS-CCHHHHHHHSSCCCSCEEEETTEEECSHHHHHHHHH
T ss_pred             eEEEEec-----CCCcHHHHHHHHHHhcCCCcEEEEcCCCC-CcHHHHHhcCCCCceeEEEECCEEEcCHHHHHHHHH
Confidence            5889998     59999999999999999999999886421 234556677 78999999999999999888777654

>4hz2_A Glutathione S-transferase domain; glutathione,enzyme function initiative; HET: GSH; 1.50A {Xanthobacter autotrophicus}

Probab=97.62  E-value=0.00013  Score=57.96  Aligned_cols=72  Identities=13%  Similarity=0.134  Sum_probs=59.6

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCC--CHHHHHHHHHhcCCCCcceEe-eCCEEEeecHHHHHHHHc
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE--NEMLRQGLKEYSSWPTFPQLY-IEGEFFGGCDITVEAYKN  166 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~--d~~~~~~L~~~sg~~tvP~Vf-IdG~~IGG~del~~l~~~  166 (179)
                      +.||..     +.||+|.+++-+|...|++|+.+.|+-  .+....++.+.....++|++. .||..|.+...+.++.++
T Consensus        23 ~~Ly~~-----~~sp~~~~vr~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vPvL~~~~g~~l~eS~aI~~yL~~   97 (230)
T 4hz2_A           23 MRIYGM-----NGSGNCWKAAQILSLTGHDFEWVETSSGAAGTRSADFLALNAIGKVPVVVLDDGTALRESNAILLHFAE   97 (230)
T ss_dssp             CEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEECCSSTTTTTSHHHHHHCTTCCSCEEECTTSCEEECHHHHHHHHHT
T ss_pred             heeeCC-----CCCccHHHHHHHHHHcCCCceEEEecCCCCccCCHHHHhhCCCCCCCEEEecCCEEeeCHHHHHHHHhc
Confidence            788988     599999999999999999999988853  223345667778888999999 899999998888887664

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=97.61  E-value=0.00024  Score=51.84  Aligned_cols=74  Identities=19%  Similarity=0.242  Sum_probs=47.8

Q ss_pred             HHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHH-------Hhc-CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE
Q 030327           76 ELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQIL-------KSL-NAPFETVNILENEMLRQGLKEYSSWPTFPQL  147 (179)
Q Consensus        76 ~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL-------~~~-gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V  147 (179)
                      +.+..+.+.- ...++|+...    +||++|+++...+       +.+ ++.+..+|++.+.+....+.+..|...+|.+
T Consensus        21 ~~~~~l~~~~-~k~vlv~F~a----~wC~~C~~~~~~~~~~~~l~~~~~~~~~~~vd~~~~~~~~~~l~~~~~v~~~Pt~   95 (134)
T 2fwh_A           21 ELNQALVEAK-GKPVMLDLYA----DWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLGLPTI   95 (134)
T ss_dssp             HHHHHHHHHT-TSCEEEEEEC----TTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHTTCCSSSEE
T ss_pred             HHHHHHHHhc-CCcEEEEEEC----CCCHHHHHHHHHhcCCHHHHHHhcCcEEEEEeCCCCcchHHHHHHHcCCCCCCEE
Confidence            3444455443 4445555544    6999999987543       222 5778888887664555666666788899998


Q ss_pred             ee---CCEEE
Q 030327          148 YI---EGEFF  154 (179)
Q Consensus       148 fI---dG~~I  154 (179)
                      ++   +|+.+
T Consensus        96 ~~~d~~G~~v  105 (134)
T 2fwh_A           96 LFFDGQGQEH  105 (134)
T ss_dssp             EEECTTSCBC
T ss_pred             EEECCCCCEe
Confidence            54   67664

>3vk9_A Glutathione S-transferase delta; glutathione binding; 2.00A {Bombyx mori}

Probab=97.61  E-value=0.00014  Score=57.06  Aligned_cols=71  Identities=17%  Similarity=0.154  Sum_probs=58.9

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcC--CCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNIL--ENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~--~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      +.+|..     +.||+|++|+-+|.++|++|+.+.|+  ..+....++.+++-..++|++..||..|.....+.++..
T Consensus         3 mkLY~~-----~~S~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~d~g~~l~eS~aI~~YL~   75 (216)
T 3vk9_A            3 IDLYYV-----PGSAPCRAVLLTAKALNLNLNLKLVDLHHGEQLKPEYLKLNPQHTVPTLVDDGLSIWESRAIITYLV   75 (216)
T ss_dssp             CEEEEC-----TTCHHHHHHHHHHHHHTCCCEEEECCGGGTGGGSHHHHHHCTTCCSCEEEETTEEECCHHHHHHHHH
T ss_pred             EEEEeC-----CCChhHHHHHHHHHHcCCCCEEEEeCCCCCccCCHHHHHhCCCCccceEecCCceeechHHHHHHHH
Confidence            578888     69999999999999999999988775  334445667777778899999999999999888887653

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=97.61  E-value=7.5e-05  Score=59.53  Aligned_cols=63  Identities=24%  Similarity=0.356  Sum_probs=43.0

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhc---CCCeEEEEcCC---C---------------H-------------------
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSL---NAPFETVNILE---N---------------E-------------------  129 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~---gv~y~~vdV~~---d---------------~-------------------  129 (179)
                      |++|+.     +|||||++....|+++   ++.+.++.+.-   +               +                   
T Consensus        90 vv~F~d-----~~Cp~C~~~~~~l~~~~~~~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~~~~~~~  164 (211)
T 1t3b_A           90 VTVFMD-----ITCHYCHLLHQQLKEYNDLGITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEVKTP  164 (211)
T ss_dssp             EEEEEC-----TTCHHHHHHHTTHHHHHHTTEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSCCCS
T ss_pred             EEEEEC-----CCCHhHHHHHHHHHHHHhCCcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCCChHHHH
Confidence            556666     7999999988877664   66766655421   1               0                   


Q ss_pred             -H--HHHHHHHhcCCCCcceEee-CCEEEeec
Q 030327          130 -M--LRQGLKEYSSWPTFPQLYI-EGEFFGGC  157 (179)
Q Consensus       130 -~--~~~~L~~~sg~~tvP~VfI-dG~~IGG~  157 (179)
                       .  ....+.+..|...+|.+++ ||+.+.|+
T Consensus       165 ~~v~~~~~l~~~~gV~gTPt~vi~nG~~~~G~  196 (211)
T 1t3b_A          165 NIVKKHYELGIQFGVRGTPSIVTSTGELIGGY  196 (211)
T ss_dssp             SHHHHHHHHHHHHTCCSSCEEECTTSCCCCSC
T ss_pred             HHHHHHHHHHHHcCCCcCCEEEEeCCEEecCC
Confidence             0  1123444568999999999 99988876

>3m0f_A Uncharacterized protein GST_N; PSI-2, NYSGXRC, glutathione, structural genomics, protein structure initiative; HET: GSH; 1.60A {Pseudomonas fluorescens} PDB: 3lxt_A*

Probab=97.61  E-value=0.0001  Score=57.23  Aligned_cols=70  Identities=20%  Similarity=0.223  Sum_probs=56.9

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEe-eCCEEEeecHHHHHHHH
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLY-IEGEFFGGCDITVEAYK  165 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~Vf-IdG~~IGG~del~~l~~  165 (179)
                      +.||..     +.||+|.+++-+|...|++|+.+.|+-... .+++++.....++|.+. .||..+.....+.++.+
T Consensus         3 ~~Ly~~-----~~sp~~~~v~~~l~~~gi~~e~~~v~~~~~-~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~   73 (213)
T 3m0f_A            3 LKLIGM-----LDSPYVRRVAISLKSLGLPFEHHSLSVFST-FEQFKAINPVVKAPTLVCEGGEVLMDSSLIIDYLE   73 (213)
T ss_dssp             CEEESC-----TTSHHHHHHHHHHHHHTCCCEEECCCTTTT-HHHHHHHCTTCCSSEEECTTCCEEESHHHHHHHHH
T ss_pred             EEEecC-----CCCCcHHHHHHHHHHCCCCcEEEEecCCCC-cHHHHhcCCCCCcCeEEeCCCcEEEcHHHHHHHHH
Confidence            567777     589999999999999999999998864322 45677777788999998 78889988888777654

>1k0d_A URE2 protein; nitrate assimilation, structural genomics, gene regulation; HET: GSH; 2.20A {Saccharomyces cerevisiae} SCOP: a.45.1.1 c.47.1.5 PDB: 1jzr_A* 1k0b_A* 1k0c_A* 1k0a_A* 1g6w_A 1g6y_A 1hqo_A

Probab=97.59  E-value=0.00024  Score=57.48  Aligned_cols=73  Identities=14%  Similarity=0.063  Sum_probs=59.1

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC--HHHHHHHHHhcCCCCcceEee---CCEEEeecHHHHH
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN--EMLRQGLKEYSSWPTFPQLYI---EGEFFGGCDITVE  162 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d--~~~~~~L~~~sg~~tvP~VfI---dG~~IGG~del~~  162 (179)
                      ..+.||..     +.||+|.+++-+|...|++|+.+.|+-.  +....++.+.+...++|.+..   ||..+.....+.+
T Consensus        18 ~~~~Ly~~-----~~~p~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~g~~l~ES~aI~~   92 (260)
T 1k0d_A           18 EGYTLFSH-----RSAPNGFKVAIVLSELGFHYNTIFLDFNLGEHRAPEFVSVNPNARVPALIDHGMDNLSIWESGAILL   92 (260)
T ss_dssp             SSEEEEEC-----TTCHHHHHHHHHHHHTTCCEEEEECCTTTTGGGSHHHHTTCTTCCSCEEEEGGGTTEEEESHHHHHH
T ss_pred             CcEEEEcC-----CCCccHHHHHHHHHHCCCCceEEEecCccccccCHHHHhhCCCCCcCEEEecCCCCeEEECHHHHHH
Confidence            56999998     4899999999999999999999887532  233456677777889999998   7889998887777


Q ss_pred             HHH
Q 030327          163 AYK  165 (179)
Q Consensus       163 l~~  165 (179)
                      +..
T Consensus        93 YL~   95 (260)
T 1k0d_A           93 HLV   95 (260)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            643

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=97.59  E-value=0.00033  Score=54.89  Aligned_cols=73  Identities=16%  Similarity=0.257  Sum_probs=48.7

Q ss_pred             CCHHHHHHHHhhh---cCCcEE-EEEeeCCCCC-CCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCC
Q 030327           73 LTPELKSTLDKVV---TGNKVV-LFMKGTKDFP-QCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWP  142 (179)
Q Consensus        73 ~~~~~~~~l~~li---~~~~Vv-lysk~t~~~p-~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~  142 (179)
                      ......+.+++++   ..++|+ ++...    + ||++|++++..|++.     ++.+..+|+++ ++. ..+.+..|..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~v~lv~f~~----~~~C~~C~~~~~~~~~la~~~~~v~~~~vd~~~-~~~-~~~~~~~~v~   77 (226)
T 1a8l_A            4 ISDADKKVIKEEFFSKMVNPVKLIVFVR----KDHCQYCDQLKQLVQELSELTDKLSYEIVDFDT-PEG-KELAKRYRID   77 (226)
T ss_dssp             SCHHHHHHHHHHTGGGCCSCEEEEEEEC----SSSCTTHHHHHHHHHHHHTTCTTEEEEEEETTS-HHH-HHHHHHTTCC
T ss_pred             CCHHHHHHHHHHHHHhcCCCeEEEEEec----CCCCchhHHHHHHHHHHHhhCCceEEEEEeCCC-ccc-HHHHHHcCCC
Confidence            3455666777776   233443 44443    7 999999999999873     46678888764 112 3345556888


Q ss_pred             CcceEee--CC
Q 030327          143 TFPQLYI--EG  151 (179)
Q Consensus       143 tvP~VfI--dG  151 (179)
                      .+|.+.+  +|
T Consensus        78 ~~Pt~~~~~~g   88 (226)
T 1a8l_A           78 RAPATTITQDG   88 (226)
T ss_dssp             SSSEEEEEETT
T ss_pred             cCceEEEEcCC
Confidence            9999977  66

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=97.58  E-value=6.1e-05  Score=52.59  Aligned_cols=60  Identities=13%  Similarity=0.243  Sum_probs=40.4

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHh---------cCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CCEEE
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKS---------LNAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEFF  154 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~---------~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG~~I  154 (179)
                      ...++|+..+    +||++|++....|.+         .++.+..+|+++++++.    +..|...+|.+++  +|+.+
T Consensus        24 ~~~~lv~f~~----~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~----~~~~v~~~Pt~~~~~~g~~~   94 (120)
T 1mek_A           24 HKYLLVEFYA----PWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLA----QQYGVRGYPTIKFFRNGDTA   94 (120)
T ss_dssp             CSEEEEEEEC----SSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSH----HHHTCCSSSEEEEEESSCSS
T ss_pred             CCeEEEEEEC----CCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCHHHH----HHCCCCcccEEEEEeCCCcC
Confidence            3345454444    699999988887754         23668888887765443    3346778999876  88643

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=97.57  E-value=0.00018  Score=51.50  Aligned_cols=64  Identities=11%  Similarity=0.147  Sum_probs=39.0

Q ss_pred             cCCcEEEEEeeCCCCCCCchHHHHHHHH---Hh----c--CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee---CCEE
Q 030327           86 TGNKVVLFMKGTKDFPQCGFSHTVVQIL---KS----L--NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI---EGEF  153 (179)
Q Consensus        86 ~~~~Vvlysk~t~~~p~Cp~C~~ak~lL---~~----~--gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI---dG~~  153 (179)
                      ....++|+...    +||++|++....+   ..    .  ++.+..+|++.+  ....+.+..|...+|.+++   +|+.
T Consensus        26 ~~k~vlv~f~a----~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~~~v~~~Pt~~~~d~~G~~   99 (130)
T 2kuc_A           26 EDKLLFVDCFT----TWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKG--EGVELRKKYGVHAYPTLLFINSSGEV   99 (130)
T ss_dssp             HSSCEEEEECC----TTCTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSST--THHHHHHHTTCCSSCEEEEECTTSCE
T ss_pred             cCCeEEEEEEC----CCCccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCc--chHHHHHHcCCCCCCEEEEECCCCcE
Confidence            34456665554    7999999988776   22    1  233444455432  1234455568888999965   7876


Q ss_pred             Ee
Q 030327          154 FG  155 (179)
Q Consensus       154 IG  155 (179)
                      +.
T Consensus       100 ~~  101 (130)
T 2kuc_A          100 VY  101 (130)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>3ubk_A Glutathione transferase; GSH binding; 1.95A {Leptospira interrogans serovar lai} PDB: 3ubl_A*

Probab=97.57  E-value=8.4e-05  Score=59.43  Aligned_cols=71  Identities=14%  Similarity=0.191  Sum_probs=58.4

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHc
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKN  166 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~  166 (179)
                      .++||..     +.||+|.+++-+|...|++|+.+.|+.+  ...++.+.+...++|.+..||..+.+...+.++..+
T Consensus         3 ~~~Ly~~-----~~sp~~~~v~~~L~~~gi~ye~~~v~~~--~~~~~~~~nP~g~vPvL~~~~~~l~eS~aI~~YL~~   73 (242)
T 3ubk_A            3 MIKLHGA-----SISNYVNKVKLGILEKGLEYEQIRIAPS--QEEDFLKISPMGKIPVLEMDGKFIFESGAILEFLDT   73 (242)
T ss_dssp             CEEEESC-----TTCHHHHHHHHHHHHHTCCEEEECCCCC--CCHHHHTTSTTCCSCEEEETTEEECCHHHHHHHHHH
T ss_pred             eEEEEeC-----CCChHHHHHHHHHHHcCCCcEEEecCCc--cCHHHHhcCCCCCcCeEEECCceEecHHHHHHHHHH
Confidence            3788888     5999999999999999999999998543  234566777788999999999889888887776543

>3niv_A Glutathione S-transferase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.30A {Legionella pneumophila subsp}

Probab=97.56  E-value=0.00017  Score=56.48  Aligned_cols=72  Identities=13%  Similarity=0.150  Sum_probs=49.0

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC----HHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN----EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d----~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      +.||..     +.||+|.+++-+|...|++|+.+.|+-.    +....++.+.....++|.+..||..+.....+.++.+
T Consensus         3 ~~Ly~~-----~~s~~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~   77 (222)
T 3niv_A            3 LILYDY-----FRSTACYRVRIALNLKKIAYEKIEVHLVNNGGEQHSLQYHQINPQELVPSLDINGQILSQSMAIIDYLE   77 (222)
T ss_dssp             -CEEEC-----TTCHHHHHHHHHHHHTTCCCCEEECCC-------------------CCSEEEETTEEEECHHHHHHHHH
T ss_pred             EEEEcC-----CCCcHHHHHHHHHHHcCCCcEEEEeccccccccccCHHHHhcCCCCCcCEEEECCEEeecHHHHHHHHH
Confidence            568887     4899999999999999999998888632    2345566777778899999999999999888877654


Q ss_pred             c
Q 030327          166 N  166 (179)
Q Consensus       166 ~  166 (179)
                      +
T Consensus        78 ~   78 (222)
T 3niv_A           78 E   78 (222)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=97.56  E-value=0.00064  Score=49.99  Aligned_cols=67  Identities=16%  Similarity=0.160  Sum_probs=44.2

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc-------CCCeEEEEcCCCHHH---------------------HHHHHHh
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNILENEML---------------------RQGLKEY  138 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-------gv~y~~vdV~~d~~~---------------------~~~L~~~  138 (179)
                      ...++|+..+    +||++|......|.+.       ++.+..++++.+.+.                     ...+.+.
T Consensus        29 gk~vll~F~a----~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  104 (152)
T 2lrn_A           29 GKYVLVDFWF----AGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLES  104 (152)
T ss_dssp             TSEEEEEEEC----TTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHH
T ss_pred             CCEEEEEEEC----CCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHH
Confidence            3445555554    5999999877766543       356677777765332                     3455556


Q ss_pred             cCCCCcceEee---CCEEEeec
Q 030327          139 SSWPTFPQLYI---EGEFFGGC  157 (179)
Q Consensus       139 sg~~tvP~VfI---dG~~IGG~  157 (179)
                      .|...+|.+|+   +|+.+..+
T Consensus       105 ~~v~~~P~~~lid~~G~i~~~~  126 (152)
T 2lrn_A          105 YCIVGFPHIILVDPEGKIVAKE  126 (152)
T ss_dssp             TTCCSSCEEEEECTTSEEEEEC
T ss_pred             hCCCcCCeEEEECCCCeEEEee
Confidence            68889999754   78887764

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=97.56  E-value=6.6e-05  Score=57.46  Aligned_cols=64  Identities=11%  Similarity=0.131  Sum_probs=45.3

Q ss_pred             cCCcEEEEEeeCCCCCC--CchHHHHHHHHHhc------C-CCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCEEE
Q 030327           86 TGNKVVLFMKGTKDFPQ--CGFSHTVVQILKSL------N-APFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEFF  154 (179)
Q Consensus        86 ~~~~Vvlysk~t~~~p~--Cp~C~~ak~lL~~~------g-v~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~~I  154 (179)
                      ....|+|+...    +|  |+.|+.+..+|+++      + +.+..+|+|++++    +...+|-..+|.+  |-||+.+
T Consensus        33 ~~~~vlVdF~a----~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvDe~~~----lA~~ygV~sIPTlilFk~G~~v  104 (140)
T 2qgv_A           33 QAPDGVVLLSS----DPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQSEA----IGDRFGAFRFPATLVFTGGNYR  104 (140)
T ss_dssp             TCSSEEEEECC----CTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHHHHHH----HHHHHTCCSSSEEEEEETTEEE
T ss_pred             CCCCEEEEEeC----CcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECCCCHH----HHHHcCCccCCEEEEEECCEEE
Confidence            44567777765    56  99999999999775      2 5566667765544    4555677778876  8899988


Q ss_pred             eec
Q 030327          155 GGC  157 (179)
Q Consensus       155 GG~  157 (179)
                      +-.
T Consensus       105 ~~~  107 (140)
T 2qgv_A          105 GVL  107 (140)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            643

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=97.55  E-value=0.00019  Score=52.04  Aligned_cols=62  Identities=18%  Similarity=0.354  Sum_probs=41.9

Q ss_pred             hhhcCC-cEEEEEeeCCCCCCCchHHHHHHHHHhc---------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--C
Q 030327           83 KVVTGN-KVVLFMKGTKDFPQCGFSHTVVQILKSL---------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--E  150 (179)
Q Consensus        83 ~li~~~-~Vvlysk~t~~~p~Cp~C~~ak~lL~~~---------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--d  150 (179)
                      +++..+ .++|+...    +||++|++....|.+.         ++.+..+|++++.++    .+..+...+|.+++  +
T Consensus        29 ~~~~~~~~vlv~f~a----~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~~  100 (140)
T 2dj1_A           29 NFVADKDTVLLEFYA----PWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASML----ASKFDVSGYPTIKILKK  100 (140)
T ss_dssp             HHHTTCSEEEEEECC----TTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCHHH----HHHTTCCSSSEEEEEET
T ss_pred             HHHhcCCeEEEEEEC----CCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccHHH----HHHCCCCccCeEEEEEC
Confidence            334443 45555554    7999999888777542         266777888777554    34457778999876  8


Q ss_pred             CE
Q 030327          151 GE  152 (179)
Q Consensus       151 G~  152 (179)
                      |+
T Consensus       101 G~  102 (140)
T 2dj1_A          101 GQ  102 (140)
T ss_dssp             TE
T ss_pred             Cc
Confidence            87

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=96.69  E-value=1.1e-05  Score=55.04  Aligned_cols=51  Identities=24%  Similarity=0.410  Sum_probs=35.0

Q ss_pred             CCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CCEEEe
Q 030327          101 PQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEFFG  155 (179)
Q Consensus       101 p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG~~IG  155 (179)
                      +||++|+.+...|++.      ++.+..+|+++++++.+    ..|...+|.+++  +|+.++
T Consensus        29 ~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~v~~~Pt~~~~~~g~~~~   87 (106)
T 2yj7_A           29 PWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNTAA----QYGIRSIPTLLLFKNGQVVD   87 (106)
Confidence            6999999999888664      24555666666555433    345667898876  887654

>1k3y_A GSTA1-1, glutathione S-transferase A1; S-hexyl glutatione, water structu transferase; HET: GTX; 1.30A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1gsf_A* 1guh_A* 1gsd_A* 1k3o_A 1k3l_A* 1pl1_A* 1pkz_A 1pkw_A* 2r6k_A* 1gse_A* 3u6v_A 1usb_A* 1ydk_A* 3q74_A 3ktl_A* 1pl2_A* 2r3x_A* 1xwg_A 3l0h_A* 1ags_A* ...

Probab=97.54  E-value=0.00045  Score=54.19  Aligned_cols=72  Identities=17%  Similarity=0.105  Sum_probs=57.8

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHh--cCCCCcceEeeCCEEEeecHHHHHHHHc
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEY--SSWPTFPQLYIEGEFFGGCDITVEAYKN  166 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~--sg~~tvP~VfIdG~~IGG~del~~l~~~  166 (179)
                      .+.+|..     +.||+|.+++-+|...|++|+.+.++..++ ..+++..  +...++|++..||..+.....+.++..+
T Consensus         3 ~~~Ly~~-----~~s~~~~~vr~~L~~~gi~ye~~~v~~~~~-~~~~~~~~~nP~g~vPvL~~~g~~l~eS~aI~~yL~~   76 (221)
T 1k3y_A            3 KPKLHYF-----NARGRMESTRWLLAAAGVEFEEKFIKSAED-LDKLRNDGYLMFQQVPMVEIDGMKLVQTRAILNYIAS   76 (221)
T ss_dssp             CCEEEEE-----SSSTTTHHHHHHHHHHTCCCEEEEECSHHH-HHHHHHTTCCTTSCSCEEEETTEEEESHHHHHHHHHH
T ss_pred             CcEEEEe-----CCCchhHHHHHHHHHcCCCceEEEeCchhH-HHHHhhhcCCCCCCCCEEEECCEEEecHHHHHHHHHH
Confidence            4678887     389999999999999999999999864333 2345555  6677999999999999998888776543

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=97.54  E-value=2.7e-05  Score=57.46  Aligned_cols=55  Identities=20%  Similarity=0.181  Sum_probs=38.3

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCEEE
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEFF  154 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~~I  154 (179)
                      .|+|+...    +||++|+.+...|+++     ++.|..+|++++.       +..+...+|.+  |.+|+.+
T Consensus        32 ~vvv~f~a----~wC~~C~~~~p~l~~la~~~~~v~~~~vd~~~~~-------~~~~i~~~Pt~~~~~~G~~v   93 (135)
T 2dbc_A           32 WVVIHLYR----SSVPMCLVVNQHLSVLARKFPETKFVKAIVNSCI-------EHYHDNCLPTIFVYKNGQIE   93 (135)
T ss_dssp             EEEEEECC----TTCHHHHHHHHHHHHHHHHCSSEEEEEECCSSSC-------SSCCSSCCSEEEEESSSSCS
T ss_pred             EEEEEEEC----CCChHHHHHHHHHHHHHHHCCCcEEEEEEhhcCc-------ccCCCCCCCEEEEEECCEEE
Confidence            46666665    7999999999888654     3556677776553       34577788887  4477654

>4glt_A Glutathione S-transferase-like protein; structural genomics, function initiative, EFI; HET: GSH; 2.20A {Methylobacillus flagellatus}

Probab=97.54  E-value=5.8e-05  Score=59.96  Aligned_cols=71  Identities=13%  Similarity=0.194  Sum_probs=56.1

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee-CCEEEeecHHHHHHHHc
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYI-EGEFFGGCDITVEAYKN  166 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI-dG~~IGG~del~~l~~~  166 (179)
                      ..||..     +.||||++|+-+|.++|++|+.++|+-... .+++.+++...+||++.. ||+.|.....+.++.++
T Consensus        23 MKLy~~-----~~SP~~~rVr~~L~e~gi~~e~~~v~~~~~-~~~~~~~nP~gkVPvL~~~dG~~l~ES~aI~~YL~~   94 (225)
T 4glt_A           23 MKLLYS-----NTSPYARKVRVVAAEKRIDVDMVLVVLADP-ECPVADHNPLGKIPVLILPDGESLYDSRVIVEYLDH   94 (225)
T ss_dssp             CEEEEC-----SSCHHHHHHHHHHHHHTCCCEEEECCTTCS-SSCGGGTCTTCCSCEEECTTSCEECSHHHHHHHHHT
T ss_pred             ceEecC-----CCCHHHHHHHHHHHHhCCCCEEEEeCCCCC-CHHHHHhCCCCCCCEEEeCCCCEEeehHHHHHHHHH
Confidence            358887     589999999999999999999998853211 134666777789999987 67999988888887654

>3r2q_A Uncharacterized GST-like protein YIBF; transferase, glutathione; HET: GSH; 1.05A {Escherichia coli}

Probab=97.53  E-value=4.8e-05  Score=58.44  Aligned_cols=70  Identities=21%  Similarity=0.229  Sum_probs=55.4

Q ss_pred             EEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEe-eCCEEEeecHHHHHHHHc
Q 030327           91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLY-IEGEFFGGCDITVEAYKN  166 (179)
Q Consensus        91 vlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~Vf-IdG~~IGG~del~~l~~~  166 (179)
                      .+|..     +.||+|.+++-+|...|++|+.+.++-. ....++.+.+...++|.+. .||..+.....+.++.++
T Consensus         2 ~Ly~~-----~~sp~~~~v~~~l~~~gi~~e~~~v~~~-~~~~~~~~~~P~g~vP~L~~~~g~~l~eS~aI~~yL~~   72 (202)
T 3r2q_A            2 KLVGS-----YTSPFVRKLSILLLEKGITFEFINELPY-NADNGVAQFNPLGKVPVLVTEEGECWFDSPIIAEYIEL   72 (202)
T ss_dssp             EEEEC-----SSCHHHHHHHHHHHHTTCCCEEEECCTT-SSSCSCTTTCTTCCSCEEECTTSCEECSHHHHHHHHHH
T ss_pred             EEEeC-----CCCcHHHHHHHHHHHcCCCCeEEEecCC-CCcHHHHHhCCCCCcCeEEecCCcEEecHHHHHHHHHH
Confidence            57777     5999999999999999999999988643 1123445566778999999 689999988888776654

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=97.52  E-value=0.00067  Score=47.92  Aligned_cols=63  Identities=16%  Similarity=0.245  Sum_probs=41.5

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHH-HH------------------HHHHhcCCC
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEML-RQ------------------GLKEYSSWP  142 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~-~~------------------~L~~~sg~~  142 (179)
                      ...++|+..+    +||++|.+....|.+.     ++.+..++++.+.+. ++                  .+.+..|..
T Consensus        25 ~k~~ll~f~~----~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~  100 (136)
T 1zzo_A           25 GKPAVLWFWA----PWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVT  100 (136)
T ss_dssp             TSCEEEEEEC----TTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCC
T ss_pred             CCeEEEEEEc----CCChhHHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHHHcCCC
Confidence            3345554444    6999999988877664     577888888765332 22                  233344667


Q ss_pred             CcceEee---CCEE
Q 030327          143 TFPQLYI---EGEF  153 (179)
Q Consensus       143 tvP~VfI---dG~~  153 (179)
                      .+|.+++   +|+.
T Consensus       101 ~~P~~~~id~~g~i  114 (136)
T 1zzo_A          101 QQPAYAFVDPHGNV  114 (136)
T ss_dssp             SSSEEEEECTTCCE
T ss_pred             CCceEEEECCCCCE
Confidence            8999877   7876

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=97.52  E-value=0.00021  Score=53.70  Aligned_cols=60  Identities=17%  Similarity=0.241  Sum_probs=41.8

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc-----C-CCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCEEE
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----N-APFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEFF  154 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----g-v~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~~I  154 (179)
                      ...|+|+...    +||++|+.....|.+.     + +.+..+|+++++++.+    ..+...+|.+  |.+|+.+
T Consensus        23 ~k~vlv~F~a----~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~l~~----~~~v~~~Pt~~~~~~G~~v   90 (149)
T 3gix_A           23 EKVLVLRFGR----DEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAVYTQ----YFDISYIPSTVFFFNGQHM   90 (149)
T ss_dssp             SSEEEEEEEC----TTSHHHHHHHHHHHHHHTTTTTTEEEEEEETTTCCHHHH----HTTCCSSSEEEEEETTEEE
T ss_pred             CCEEEEEEEC----CCCHHHHHHHHHHHHHHHHccCceEEEEEECCcCHHHHH----HcCCCccCeEEEEECCeEE
Confidence            4455655554    7999999999988764     2 5577788887766543    3466677876  5578766

>1vf1_A Glutathione S-transferase 3; detoxification; HET: GSH; 1.77A {Gallus gallus} PDB: 1vf2_A* 1vf3_A* 1vf4_A

Probab=97.51  E-value=0.00055  Score=54.15  Aligned_cols=73  Identities=18%  Similarity=0.174  Sum_probs=58.3

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHh--cCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEY--SSWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~--sg~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      ..+.||..     +.|++|.+++-+|...|++|+.+.++..++ ..+++..  +...++|.+..||..+.....+.++..
T Consensus         3 ~~~~Ly~~-----~~s~~~~~vr~~L~~~gi~ye~~~v~~~~~-~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~YL~   76 (229)
T 1vf1_A            3 AKPVLYYF-----NGRGKMESIRWLLAAAGVEFEEVFLETREQ-YEKLLQSGILMFQQVPMVEIDGMKLVQTRAILNYIA   76 (229)
T ss_dssp             CCCEEEEC-----SSCTTTHHHHHHHHHTTCCCEEEECCSHHH-HHHHHHHTCSTTSCSCEEEETTEEEESHHHHHHHHH
T ss_pred             CCeEEEEe-----CCCchhHHHHHHHHHcCCCCeeEecCcHHH-HHHHHHhcCCCCCCCCEEEECCEEEEcHHHHHHHHH
Confidence            35788887     389999999999999999999999864333 2345555  667899999999999999888877654


Q ss_pred             c
Q 030327          166 N  166 (179)
Q Consensus       166 ~  166 (179)
                      +
T Consensus        77 ~   77 (229)
T 1vf1_A           77 G   77 (229)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=97.51  E-value=0.0003  Score=50.30  Aligned_cols=54  Identities=19%  Similarity=0.248  Sum_probs=38.1

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhc----C--CCeEEEEcCCCHHHHHHHHHhcCCCCcceEee
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSL----N--APFETVNILENEMLRQGLKEYSSWPTFPQLYI  149 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~----g--v~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI  149 (179)
                      ..++|+...    +||++|++....|.+.    +  +.+..+|++++.++.+.    .+...+|.+++
T Consensus        36 ~~~lv~f~a----~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~----~~v~~~Pt~~~   95 (130)
T 2dml_A           36 GLWLVEFYA----PWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQSLGGQ----YGVQGFPTIKI   95 (130)
T ss_dssp             SCEEEEEEC----TTCSTTGGGHHHHHHHHHHTTTTSEEEEEETTTCHHHHHH----HTCCSSSEEEE
T ss_pred             CeEEEEEEC----CCCHHHHhhCHHHHHHHHHhcCceEEEEEeCCCCHHHHHH----cCCCccCEEEE
Confidence            345555554    6999999988877553    2  67888899888765443    46778999866

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=97.48  E-value=0.00025  Score=57.83  Aligned_cols=61  Identities=15%  Similarity=0.288  Sum_probs=43.9

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CCEEEe
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEFFG  155 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG~~IG  155 (179)
                      ...|+|+...    +||++|+.....|.+.      ++.+..||+++++++    ....|...+|++++  +|+.+.
T Consensus        26 ~~~v~v~f~a----~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~~G~~~~   94 (287)
T 3qou_A           26 TTPVLFYFWS----ERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQMI----AAQFGLRAIPTVYLFQNGQPVD   94 (287)
T ss_dssp             TSCEEEEEEC----TTCTTTTTTHHHHHHHHHHHTSSSEEEEEETTTCHHH----HHTTTCCSSSEEEEEETTEEEE
T ss_pred             CCeEEEEEEC----CCChHHHHHHHHHHHHHHHcCCCeEEEEEeCccCHHH----HHHcCCCCCCeEEEEECCEEEE
Confidence            3456666555    7999999888877653      377889999888754    44457778998754  887653

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.46  E-value=0.00044  Score=49.41  Aligned_cols=58  Identities=19%  Similarity=0.255  Sum_probs=39.5

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHh----------cCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CCEEE
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKS----------LNAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEFF  154 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~----------~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG~~I  154 (179)
                      .++|+...    +||++|+++...|.+          .++.+..+|++.++++.+    ..+...+|.+++  +|+.+
T Consensus        27 ~~lv~f~a----~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~----~~~v~~~Pt~~~~~~g~~~   96 (133)
T 1x5d_A           27 VWMVEFYA----PWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLAS----RYGIRGFPTIKIFQKGESP   96 (133)
T ss_dssp             EEEEEEEC----TTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCCHHHH----HHTCCSSSEEEEEETTEEE
T ss_pred             eEEEEEEC----CCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCHHHHH----hCCCCeeCeEEEEeCCCce
Confidence            45555554    699999988776644          246678888887765443    346678998855  77755

>4exj_A Uncharacterized protein; transferase-like protein, transcription regulation, transfer structural genomics; 1.64A {Lodderomyces elongisporus nrrl yb-4239}

Probab=97.45  E-value=0.00032  Score=55.85  Aligned_cols=70  Identities=16%  Similarity=0.142  Sum_probs=56.0

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC--HHHHHHHHHhcCCCCcceEee-CCEEEeecHHHHHHHH
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN--EMLRQGLKEYSSWPTFPQLYI-EGEFFGGCDITVEAYK  165 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d--~~~~~~L~~~sg~~tvP~VfI-dG~~IGG~del~~l~~  165 (179)
                      ++ +|..     + ||+|.+++-+|...|++|+.+.|+-.  .....++.+.+...++|.+.. ||..+.....+.++..
T Consensus         4 ~l-Ly~~-----~-s~~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~P~g~vPvL~~~dg~~l~eS~aI~~yL~   76 (238)
T 4exj_A            4 AI-LYTG-----P-TGNGRKPLVLGKLLNAPIKVHMFHWPTKDIQEDWYLKLNPAGIVPTLVDDKGTPITESNNILLYIA   76 (238)
T ss_dssp             EE-EEEC-----S-STTTHHHHHHHHHTTCSEEEEECC-CCSGGGSHHHHHHCTTCCSCEEECTTSCEEESHHHHHHHHH
T ss_pred             ee-EeeC-----C-CCchHHHHHHHHHcCCCceEEEecccCCccCCHHHHhhCCCCCCCEEEeCCCcEEeeHHHHHHHHH
Confidence            45 8887     5 99999999999999999999887532  344556677778889999998 5789988888777643

>1m0u_A GST2 gene product; flight muscle protein, sigma, transferase; HET: GSH; 1.75A {Drosophila melanogaster} SCOP: a.45.1.1 c.47.1.5

Probab=97.41  E-value=0.00047  Score=56.04  Aligned_cols=73  Identities=15%  Similarity=0.166  Sum_probs=59.4

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHc
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKN  166 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~  166 (179)
                      ...+.||...     .|++|.+++-+|...|++|+.+.++.+.  ..++++.+...++|.+..||..|.....+.++..+
T Consensus        47 m~~~~Ly~~~-----~s~~~~~vr~~L~~~gi~ye~~~v~~~~--~~e~~~~nP~gkVPvL~~~g~~l~ES~aI~~YL~~  119 (249)
T 1m0u_A           47 KHSYTLFYFN-----VKALAEPLRYLFAYGNQEYEDVRVTRDE--WPALKPTMPMGQMPVLEVDGKRVHQSISMARFLAK  119 (249)
T ss_dssp             CCCEEEEEES-----SSGGGHHHHHHHHHHTCCCEEEEECTTT--HHHHGGGSGGGCSCEEEETTEEEECHHHHHHHHHH
T ss_pred             CCCeEEEEcC-----CcccHHHHHHHHHHcCCCcEEEEeCHHH--HHHHhhcCCCCCCCEEEECCEEEecHHHHHHHHHH
Confidence            4568999884     7999999999999999999999987432  24566666677999999999999998888776543

>1tu7_A Glutathione S-transferase 2; HET: GSH; 1.50A {Onchocerca volvulus} SCOP: a.45.1.1 c.47.1.5 PDB: 1tu8_A*

Probab=97.41  E-value=0.00029  Score=54.67  Aligned_cols=70  Identities=13%  Similarity=0.129  Sum_probs=56.2

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      ++++|..     +.|++|.+++-+|...|++|+.+.++-..  ..++++.+...++|.+..||..|.+...+.++.+
T Consensus         2 ~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~~--~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~yL~   71 (208)
T 1tu7_A            2 SYKLTYF-----SIRGLAEPIRLFLVDQDIKFIDDRIAKDD--FSSIKSQFQFGQLPCLYDGDQQIVQSGAILRHLA   71 (208)
T ss_dssp             CEEEEEE-----SSSGGGHHHHHHHHHTTCCCEEEEECGGG--STTTGGGSTTSCSCEEEETTEEEESHHHHHHHHH
T ss_pred             CcEEEEc-----CCCcchHHHHHHHHHcCCCceEEEEcHHH--HHHhccCCCCCCCCEEEECCEEEEcHHHHHHHHH
Confidence            4788888     48999999999999999999998885321  1245556677799999999999998888777654

>1nhy_A EF-1-gamma 1, elongation factor 1-gamma 1; protein synthesis, GST-like, translation; 3.00A {Saccharomyces cerevisiae} SCOP: a.45.1.1 c.47.1.5

Probab=97.41  E-value=0.00023  Score=55.48  Aligned_cols=69  Identities=9%  Similarity=-0.053  Sum_probs=55.9

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee-CCEEEeecHHHHHHHHc
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYI-EGEFFGGCDITVEAYKN  166 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI-dG~~IGG~del~~l~~~  166 (179)
                      .++||. .     .|++|.+++-+|...|++|+.+.++   ....++.+.+...++|.+.. ||..|.+...+.++.++
T Consensus         3 ~~~Ly~-~-----~~~~~~~v~~~l~~~gi~~e~~~~~---~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~   72 (219)
T 1nhy_A            3 QGTLYA-N-----FRIRTWVPRGLVKALKLDVKVVTPD---AAAEQFARDFPLKKVPAFVGPKGYKLTEAMAINYYLVK   72 (219)
T ss_dssp             TCEEEC-C-----SSHHHHHHHHHHHHHTCCCEEECGG---GCHHHHHHHCTTCCSSEEECGGGCEEESHHHHHHHHHH
T ss_pred             ceEEec-C-----CCCChHHHHHHHHHcCCCceeeccc---CCCHHHHHHCCCCCCCeEEcCCCCEEecHHHHHHHHHH
Confidence            467888 4     6999999999999999999999986   22345566777889999998 88899988887776543

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=97.41  E-value=5.8e-05  Score=58.64  Aligned_cols=47  Identities=11%  Similarity=-0.029  Sum_probs=30.3

Q ss_pred             CCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEe
Q 030327          101 PQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQLY  148 (179)
Q Consensus       101 p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~Vf  148 (179)
                      +|||+|+.....|+++     ++.+..+|+++++++.+.+.. .|...+|.++
T Consensus        64 ~WC~pC~~~~P~l~~l~~~~~~v~~~~v~~d~~~~~~~~~~~-~~v~~iPt~i  115 (167)
T 1z6n_A           64 MWCPDCQINLAALDFAQRLQPNIELAIISKGRAEDDLRQRLA-LERIAIPLVL  115 (167)
T ss_dssp             TTCHHHHHHHHHHHHHHHHCTTEEEEEECHHHHHHHTTTTTT-CSSCCSSEEE
T ss_pred             CCChhHHHHHHHHHHHHHHCCCcEEEEEECCCCHHHHHHHHH-cCCCCcCeEE
Confidence            6999999999988765     355666777554443222211 1477899853

>3gtu_B Glutathione S-transferase; conjugation, detoxification, cytosolic, heterodimer; 2.80A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5

Probab=97.39  E-value=0.0012  Score=51.81  Aligned_cols=74  Identities=12%  Similarity=0.107  Sum_probs=55.0

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCC-------CHHHHHHHHHh-cCCCCcceEeeCCEEEeecH
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE-------NEMLRQGLKEY-SSWPTFPQLYIEGEFFGGCD  158 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~-------d~~~~~~L~~~-sg~~tvP~VfIdG~~IGG~d  158 (179)
                      ..+++||..     +.|++|.+++-+|...|++|+.+.|+-       .++....+... ....++|.+..||..+....
T Consensus         3 ~~~~~Ly~~-----~~s~~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~d~g~~l~eS~   77 (224)
T 3gtu_B            3 ESSMVLGYW-----DIRGLAHAIRLLLEFTDTSYEEKRYTCGEAPDYDRSQWLDVKFKLDLDFPNLPYLLDGKNKITQSN   77 (224)
T ss_dssp             CCCEEEEEE-----SSSGGGHHHHHHHHHTTCCEEEEEECCCCSSSCCCHHHHHHHTTSCCSSCCSSEEEETTEEEESHH
T ss_pred             CCCcEEEEe-----CCCcchHHHHHHHHHcCCCceEEEeecCCcccccHHHHHhhhhhcCCCCCCCCEEEECCEEeecHH
Confidence            356788887     489999999999999999999988862       22322222112 34568999988888899888


Q ss_pred             HHHHHHH
Q 030327          159 ITVEAYK  165 (179)
Q Consensus       159 el~~l~~  165 (179)
                      .+.++..
T Consensus        78 aI~~yL~   84 (224)
T 3gtu_B           78 AILRYIA   84 (224)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8777654

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=97.39  E-value=0.00066  Score=48.69  Aligned_cols=55  Identities=13%  Similarity=0.103  Sum_probs=38.6

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc-----------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI  149 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI  149 (179)
                      ...++|+...    +||++|++....|++.           ++.+..+|+++++++.    +..+...+|.+++
T Consensus        33 ~~~vlv~F~a----~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~~l~----~~~~v~~~Pt~~~   98 (127)
T 3h79_A           33 EKDVFVLYYV----PWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVI----ERMRVSGFPTMRY   98 (127)
T ss_dssp             TCEEEEEEEC----TTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCHHHH----HHTTCCSSSEEEE
T ss_pred             CCCEEEEEEC----CccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccHhHH----HhcCCccCCEEEE
Confidence            3445555554    7999999999988774           2567788888776543    3456778898743

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=97.37  E-value=0.00067  Score=50.01  Aligned_cols=43  Identities=9%  Similarity=0.104  Sum_probs=28.7

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc-------CCCeEEEEcCCCHHHHH
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNILENEMLRQ  133 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-------gv~y~~vdV~~d~~~~~  133 (179)
                      ...++|+..+    +||++|......|.+.       ++.+..++++.+++..+
T Consensus        34 gk~vlv~f~~----~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~~~~~   83 (165)
T 3or5_A           34 GKAYIVNFFA----TWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVK   83 (165)
T ss_dssp             TCEEEEEEEC----TTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCHHHHH
T ss_pred             CCEEEEEEEc----CcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHH
Confidence            4455555555    6999999988877553       35677777777655433

>3ik7_A Glutathione S-transferase A4; human GST A4-4, enzyme, cytoplasm, polymorphism; HET: BOB; 1.97A {Homo sapiens} PDB: 1gum_A 1gul_A*

Probab=97.37  E-value=0.00064  Score=53.09  Aligned_cols=73  Identities=15%  Similarity=0.134  Sum_probs=55.6

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHh--cCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEY--SSWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~--sg~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      ++++||..     +.|++|.+++-+|...|++|+.+.|+..++. ..+...  ....++|.+..||..+.+...+.++.+
T Consensus         3 ~~~~Ly~~-----~~s~~~~~v~~~L~~~gi~ye~~~v~~~~~~-~~~~p~~~~p~g~vP~L~~~g~~l~eS~aI~~yL~   76 (222)
T 3ik7_A            3 ARPKLHYP-----NGRGRMESVRWVLAAAGVEFDEEFLETKEQL-YKLQDGNHLLFQQVPMVEIDGMKLVQTRSILHYIA   76 (222)
T ss_dssp             CSCEEEEC-----SSCTTTHHHHHHHHHTTCCCEEEECCSHHHH-HHHHHTTCSTTSCSCEEEETTEEEESHHHHHHHHH
T ss_pred             CCcEEEEe-----CCCcchHHHHHHHHHcCCCeeEEeeCcHHHH-HHhhhcCCCCCCCCCEEEECCEEeehHHHHHHHHH
Confidence            35788888     4899999999999999999999999653332 122221  114789999999999999888877654


Q ss_pred             c
Q 030327          166 N  166 (179)
Q Consensus       166 ~  166 (179)
                      +
T Consensus        77 ~   77 (222)
T 3ik7_A           77 D   77 (222)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3tou_A Glutathione S-transferase protein; GSH binding site, GSH; HET: GSH; 1.75A {Ralstonia solanacearum} PDB: 3tot_A*

Probab=97.36  E-value=0.00016  Score=57.12  Aligned_cols=71  Identities=11%  Similarity=0.131  Sum_probs=55.8

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee-CCEEEeecHHHHHHHHc
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYI-EGEFFGGCDITVEAYKN  166 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI-dG~~IGG~del~~l~~~  166 (179)
                      +.||..     +.||+|.+++-+|...|++|+.+.++.... .+.+.+.....++|.+.+ ||..+.+...+.++.++
T Consensus         3 ~~Ly~~-----~~sp~~~~vr~~L~~~gi~ye~~~v~~~~~-~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~yL~~   74 (226)
T 3tou_A            3 MKLIGS-----HASPYTRKVRVVLAEKKIDYQFVLEDVWNA-DTQIHQFNPLGKVPCLVMDDGGALFDSRVIAEYADT   74 (226)
T ss_dssp             CEEEEC-----SSCHHHHHHHHHHHHTTCCCEEEECCTTST-TCCGGGTCTTCCSCEEECTTSCEECSHHHHHHHHHH
T ss_pred             EEEecC-----CCCchHHHHHHHHHHcCCCcEEEecCccCC-cHHHHHhCCCCCCCEEEeCCCCEeccHHHHHHHHHH
Confidence            568888     489999999999999999999998853211 123556677889999996 78889888888776543

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=97.36  E-value=0.0011  Score=48.06  Aligned_cols=65  Identities=17%  Similarity=0.250  Sum_probs=42.4

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHh----------cCCCeEEEEcCCCHHH-HHH-------------------HH
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKS----------LNAPFETVNILENEML-RQG-------------------LK  136 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~----------~gv~y~~vdV~~d~~~-~~~-------------------L~  136 (179)
                      ...++|+..+    +||++|......|.+          .++.+..++++.+.+. ++.                   +.
T Consensus        31 gk~vll~F~a----~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  106 (142)
T 3eur_A           31 AEYTLLFINN----PGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNK  106 (142)
T ss_dssp             CSEEEEEECC----SSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHT
T ss_pred             CCEEEEEEEC----CCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhh
Confidence            3456666555    699999987776665          3566777777776443 222                   23


Q ss_pred             HhcCCCCcceEee---CCEEEe
Q 030327          137 EYSSWPTFPQLYI---EGEFFG  155 (179)
Q Consensus       137 ~~sg~~tvP~VfI---dG~~IG  155 (179)
                      +..+...+|.+|+   +|+.++
T Consensus       107 ~~~~v~~~P~~~lid~~G~i~~  128 (142)
T 3eur_A          107 NLYDLRAIPTLYLLDKNKTVLL  128 (142)
T ss_dssp             TCSCCTTCSEEEEECTTCBEEE
T ss_pred             hhcCCCcCCeEEEECCCCcEEe
Confidence            3446678998865   677665

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=97.34  E-value=0.00014  Score=60.04  Aligned_cols=83  Identities=17%  Similarity=0.201  Sum_probs=50.4

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCEEEeecHH
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEFFGGCDI  159 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~~IGG~de  159 (179)
                      ...|+|+...    +||++|+.+...|.++     ++.|..+|++.     ..+....+...+|.+  |.+|+.++-+-.
T Consensus       133 ~k~VvV~Fya----~wC~~Ck~l~p~l~~La~~~~~v~f~kVd~d~-----~~l~~~~~I~~~PTll~~~~G~~v~~~vG  203 (245)
T 1a0r_P          133 ITTIVVHIYE----DGIKGCDALNSSLICLAAEYPMVKFCKIKASN-----TGAGDRFSSDVLPTLLVYKGGELLSNFIS  203 (245)
T ss_dssp             TCEEEEEEEC----TTSTTHHHHHHHHHHHHHHCTTSEEEEEEHHH-----HCCTTSSCTTTCSEEEEEETTEEEEEETT
T ss_pred             CCEEEEEEEC----CCChHHHHHHHHHHHHHHHCCCCEEEEEeCCc-----HHHHHHCCCCCCCEEEEEECCEEEEEEeC
Confidence            4456666664    7999999999988664     46677777742     224444567778877  448987653322


Q ss_pred             HHHH----HHcccHHHHHHhhhc
Q 030327          160 TVEA----YKNGELQELLEKALC  178 (179)
Q Consensus       160 l~~l----~~~GeL~~~L~~a~~  178 (179)
                      +...    ....+|..+|.+.|+
T Consensus       204 ~~~~~g~~~~~e~Le~~L~~~g~  226 (245)
T 1a0r_P          204 VTEQLAEEFFTGDVESFLNEYGL  226 (245)
T ss_dssp             GGGGSCTTCCHHHHHHHHHTTTC
T ss_pred             CcccccccccHHHHHHHHHHcCC
Confidence            2111    011246777766653

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=97.34  E-value=0.002  Score=46.99  Aligned_cols=65  Identities=18%  Similarity=0.309  Sum_probs=42.0

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc-------CCCeEEEEcCCCHH-HHH-----------------HHHHhcCC
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNILENEM-LRQ-----------------GLKEYSSW  141 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-------gv~y~~vdV~~d~~-~~~-----------------~L~~~sg~  141 (179)
                      ...++|+..+    +||++|.+....|.+.       ++.+..++++.+++ +++                 .+.+..|.
T Consensus        26 gk~vlv~F~~----~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  101 (151)
T 2f9s_A           26 GKGVFLNFWG----TWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDV  101 (151)
T ss_dssp             TSEEEEEEEC----TTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTTC
T ss_pred             CCEEEEEEEC----CCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcCC
Confidence            4455555554    6999999877776543       57777888876543 222                 34444577


Q ss_pred             CCcceEe-e--CCEEEe
Q 030327          142 PTFPQLY-I--EGEFFG  155 (179)
Q Consensus       142 ~tvP~Vf-I--dG~~IG  155 (179)
                      ..+|.+| +  +|+.+.
T Consensus       102 ~~~P~~~lid~~G~i~~  118 (151)
T 2f9s_A          102 SPLPTTFLINPEGKVVK  118 (151)
T ss_dssp             CSSCEEEEECTTSEEEE
T ss_pred             CCCCeEEEECCCCcEEE
Confidence            8899964 4  677665

>1b48_A GST, mgsta4-4, protein (glutathione S-transferase); subunit cooperativity; HET: HAG GSH; 2.60A {Mus musculus} SCOP: a.45.1.1 c.47.1.5 PDB: 1guk_A

Probab=97.32  E-value=0.00034  Score=54.95  Aligned_cols=73  Identities=14%  Similarity=0.148  Sum_probs=57.3

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHh--cCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEY--SSWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~--sg~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      ..+++|..     +.||+|.+++-+|...|++|+.+.++..++ ..++++.  +...++|.+..||..+.....+.++..
T Consensus         2 ~~~~Ly~~-----~~s~~~~~v~~~L~~~gi~ye~~~v~~~~~-~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~YL~   75 (221)
T 1b48_A            2 AKPKLYYF-----NGRGRMESIRWLLAAAGVEFEEEFLETREQ-YEKMQKDGHLLFGQVPLVEIDGMMLTQTRAILSYLA   75 (221)
T ss_dssp             CCCEEEBC-----SSCTTTHHHHHHHHHHTCCCCCCBCCCHHH-HHHHHTTTCSSSSCSCEEEETTEEECCHHHHHHHHH
T ss_pred             CceEEEEe-----CCCcchHHHHHHHHHcCCCceEEEeCchHh-HHHHHhcCCCCCCCCCEEEECCEEEecHHHHHHHHH
Confidence            34678887     489999999999999999999988863332 2345555  667789999999999999888877654


Q ss_pred             c
Q 030327          166 N  166 (179)
Q Consensus       166 ~  166 (179)
                      +
T Consensus        76 ~   76 (221)
T 1b48_A           76 A   76 (221)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=96.42  E-value=3.3e-05  Score=55.63  Aligned_cols=67  Identities=13%  Similarity=0.284  Sum_probs=37.9

Q ss_pred             HHhhhcCCc-EEEEEeeCCCCCCCchHHHHHHHH---Hhc----C--CCeEEEEcCCCHHHHHHHHHhcCCCCcceEee-
Q 030327           81 LDKVVTGNK-VVLFMKGTKDFPQCGFSHTVVQIL---KSL----N--APFETVNILENEMLRQGLKEYSSWPTFPQLYI-  149 (179)
Q Consensus        81 l~~li~~~~-Vvlysk~t~~~p~Cp~C~~ak~lL---~~~----g--v~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI-  149 (179)
                      ++.....++ ++|+..+    +||++|++....|   .+.    +  +.+..+|++  .+....+.+..|...+|.+++ 
T Consensus        12 ~~~~~~~~k~vlv~f~a----~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~~~v~~~Pt~~~~   85 (130)
T 2lst_A           12 LALAQAHGRMVMVYFHS----EHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVD--TPEGQELARRYRVPGTPTFVFL   85 (130)
Confidence            444444433 4444443    6999999988766   332    2  334444553  222234455557778998865 


Q ss_pred             ---CCEE
Q 030327          150 ---EGEF  153 (179)
Q Consensus       150 ---dG~~  153 (179)
                         +|+.
T Consensus        86 d~~~G~~   92 (130)
T 2lst_A           86 VPKAGAW   92 (130)
Confidence               4765

>4ikh_A Glutathione S-transferase; enzyme function initiative, EFI, structural genomics; HET: GSH; 2.10A {Pseudomonas protegens}

Probab=97.30  E-value=0.00056  Score=54.33  Aligned_cols=73  Identities=11%  Similarity=0.097  Sum_probs=57.9

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCC--CHHHHHHHHHhcCCCCcceEee----CC--EEEeecH
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE--NEMLRQGLKEYSSWPTFPQLYI----EG--EFFGGCD  158 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~--d~~~~~~L~~~sg~~tvP~VfI----dG--~~IGG~d  158 (179)
                      ...++||..     + |++|.+++-+|...|++|+.+.|+-  .+....++.+.....++|.+..    ||  ..+....
T Consensus        20 ~~~~~Ly~~-----~-~~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~dg~dG~~~~l~eS~   93 (244)
T 4ikh_A           20 PEWIQLYSL-----P-TPNGVKVSIMLEEIGLPYEAHRVSFETQDQMTPEFLSVSPNNKIPAILDPHGPGDQPLALFESG   93 (244)
T ss_dssp             TTSEEEEEC-----S-SHHHHHHHHHHHHHTCCEEEEECCTTTTTTSSHHHHTTCTTSCSCEEEETTCGGGCCEEEESHH
T ss_pred             CCeeEEEeC-----C-CCChHHHHHHHHHcCCCceEEEecCCCCCcCChHHHhcCCCCCCCEEEecCCCCCCceeEEcHH
Confidence            357999988     5 9999999999999999999988753  2334456777777889999998    45  6888888


Q ss_pred             HHHHHHH
Q 030327          159 ITVEAYK  165 (179)
Q Consensus       159 el~~l~~  165 (179)
                      .+.++..
T Consensus        94 aI~~yL~  100 (244)
T 4ikh_A           94 AILIYLA  100 (244)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7777644

>3cbu_A Probable GST-related protein; thioredoxin fold, GST C-terminal domain-like fold, structura genomics, joint center for structural genomics; 2.05A {Ralstonia eutropha}

Probab=97.30  E-value=0.0007  Score=52.36  Aligned_cols=68  Identities=16%  Similarity=0.114  Sum_probs=53.3

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHc
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKN  166 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~  166 (179)
                      +.||..     +.||+|.+++-+|...|++|+.+.++-. ....++   +...++|.+..||..+.+...+.++.++
T Consensus         3 ~~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~-~~~~~~---~P~g~vP~L~~~~~~l~eS~aI~~yL~~   70 (214)
T 3cbu_A            3 LKLCGF-----AASNYYNKVKLALLEKNVPFEEVLAWIG-ETDTTA---TPAGKVPYMITESGSLCESEVINEYLEA   70 (214)
T ss_dssp             EEEEEC-----TTCHHHHHHHHHHHHHTCCEEEEECCTT-SSCTTT---STTCCSCEEEETTEEECSHHHHHHHHHH
T ss_pred             EEEecC-----CCCcHhHHHHHHHHhCCCCCEEEecCcc-cCCccc---CCCCCCCEEEECCeeeecHHHHHHHHHH
Confidence            678887     5899999999999999999999988631 001112   4567899999999999988888776543

>2ycd_A Glutathione S-transferase; SOIL bacteria, herbicide detoxification; HET: GTB; 1.40A {Agrobacterium tumefaciens} PDB: 3lq7_A

Probab=97.30  E-value=0.0002  Score=56.63  Aligned_cols=73  Identities=11%  Similarity=0.124  Sum_probs=58.3

Q ss_pred             cEEEEEeeCCCCCCC-----chHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHH
Q 030327           89 KVVLFMKGTKDFPQC-----GFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEA  163 (179)
Q Consensus        89 ~Vvlysk~t~~~p~C-----p~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l  163 (179)
                      +++||..     +.|     ++|.+++-+|...|++|+.+.++-......++.+.+...++|.+..||..|.+...+.++
T Consensus        18 ~~~Ly~~-----~~s~~~~~~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~y   92 (230)
T 2ycd_A           18 TITVFER-----SPDGGRGLARDMPVRWALEEVGQPYHVRRLSFEAMKEASHLAYQPFGQIPSYEQGDLILFESGAIVMH   92 (230)
T ss_dssp             EEEEESS-----CTTTTSSCSTHHHHHHHHHHHTCCCEEEEECHHHHTSTTGGGTCTTSCSCEEEETTEEEECHHHHHHH
T ss_pred             eEEEecC-----CCccccCCCccHHHHHHHHHcCCCceEEEeCccccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHH
Confidence            5899988     488     999999999999999999998863212223455666778999999999999998888876


Q ss_pred             HHc
Q 030327          164 YKN  166 (179)
Q Consensus       164 ~~~  166 (179)
                      .++
T Consensus        93 L~~   95 (230)
T 2ycd_A           93 IAQ   95 (230)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=97.29  E-value=0.00092  Score=48.22  Aligned_cols=67  Identities=12%  Similarity=0.122  Sum_probs=43.0

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHH----------HhcCCCeEEEEcCCCHHHHHHH-HH------------------
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQIL----------KSLNAPFETVNILENEMLRQGL-KE------------------  137 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL----------~~~gv~y~~vdV~~d~~~~~~L-~~------------------  137 (179)
                      ...++|+...    +||++|.+....|          .+.++.+..++++.+++..+.+ .+                  
T Consensus        27 gk~vll~F~a----~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  102 (142)
T 3ewl_A           27 AQYTMLFFYD----PDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTR  102 (142)
T ss_dssp             CSEEEEEECC----SSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHT
T ss_pred             CCEEEEEEEC----CCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhH
Confidence            4456665555    6999999864433          3356778888888765543322 21                  


Q ss_pred             -hcCCCCcceEee---CCEEEeec
Q 030327          138 -YSSWPTFPQLYI---EGEFFGGC  157 (179)
Q Consensus       138 -~sg~~tvP~VfI---dG~~IGG~  157 (179)
                       ..|...+|.+|+   +|+.+.+.
T Consensus       103 ~~~~v~~~P~~~lid~~G~i~~~~  126 (142)
T 3ewl_A          103 QLYDIRATPTIYLLDGRKRVILKD  126 (142)
T ss_dssp             TCSCCCSSSEEEEECTTCBEEECS
T ss_pred             HHcCCCCCCeEEEECCCCCEEecC
Confidence             456778998755   68877653

>4ags_A Thiol-dependent reductase 1; transferase, leishmaniasis, DE-gluathionylation; HET: MSE GSH; 2.30A {Leishmania infantum}

Probab=97.29  E-value=0.00037  Score=60.82  Aligned_cols=75  Identities=16%  Similarity=0.159  Sum_probs=59.2

Q ss_pred             cCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee-CCEEEeecHHHHHHH
Q 030327           86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYI-EGEFFGGCDITVEAY  164 (179)
Q Consensus        86 ~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI-dG~~IGG~del~~l~  164 (179)
                      .+.++++|..     +.||+|.+++-+|+..|++|+.+.|+-. ...+.+.+.....++|.+.+ ||..|.....+.++.
T Consensus       249 ~~~~~~L~~~-----~~sp~~~rv~~~L~~~gi~y~~~~v~~~-~~~~~~~~~~P~g~vP~L~~~~g~~l~eS~aI~~yL  322 (471)
T 4ags_A          249 ANGGHVLYSN-----LFCPFVDRARLASELRKFQMHIVEVPLH-PQPEWYKYINPRDTVPALFTPSGEAVHESQLIVQYI  322 (471)
T ss_dssp             GTTSCEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEECCCS-SCCTTHHHHCTTCCSCEEECTTSCEEESHHHHHHHH
T ss_pred             CCCcEEEEec-----CCCchHHHHHHHHHHCCCCcEEEEecCC-cCcHHHHHhCCCCCcCeEEeCCCcEeecHHHHHHHH
Confidence            4457999998     4899999999999999999999988643 11234455666789999986 888999888887775


Q ss_pred             Hc
Q 030327          165 KN  166 (179)
Q Consensus       165 ~~  166 (179)
                      ++
T Consensus       323 ~~  324 (471)
T 4ags_A          323 DC  324 (471)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=97.29  E-value=0.00043  Score=54.97  Aligned_cols=61  Identities=18%  Similarity=0.268  Sum_probs=42.9

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc----C--CCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CCEEEe
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL----N--APFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEFFG  155 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~----g--v~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG~~IG  155 (179)
                      ...|+|+...    +||++|+.....|.++    +  +.+..+|++.++++    .+..+...+|.+++  +|+.+.
T Consensus        30 ~k~vvv~F~a----~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~l----~~~~~v~~~Pt~~~~~~G~~~~   98 (222)
T 3dxb_A           30 DGAILVDFWA----EWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT----APKYGIRGIPTLLLFKNGEVAA   98 (222)
T ss_dssp             SSCEEEEEEC----TTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCTTT----GGGGTCCSBSEEEEEETTEEEE
T ss_pred             CCEEEEEEEC----CcCHHHHHHHHHHHHHHHHhcCCcEEEEEECCCCHHH----HHHcCCCcCCEEEEEECCeEEE
Confidence            3345555554    7999999998888654    2  66888888877654    33457778998866  886653

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=97.26  E-value=0.0031  Score=45.87  Aligned_cols=65  Identities=15%  Similarity=0.140  Sum_probs=41.5

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc---C-CCeEEEEcCCCHHH-HH------------------HHHHhcCCCC
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL---N-APFETVNILENEML-RQ------------------GLKEYSSWPT  143 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~---g-v~y~~vdV~~d~~~-~~------------------~L~~~sg~~t  143 (179)
                      ...++|+..+    +||++|.+....|+++   + +.+..++++++++. ++                  .+.+..|...
T Consensus        42 gk~~ll~f~~----~~C~~C~~~~~~l~~l~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  117 (156)
T 1kng_A           42 GKVSLVNVWA----SWCVPCHDEAPLLTELGKDKRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYG  117 (156)
T ss_dssp             TSCEEEEEEC----TTCHHHHHHHHHHHHHTTCTTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCS
T ss_pred             CCEEEEEEEc----ccCHhHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHHHhcCcCc
Confidence            3344444444    6999999999888775   3 67777787665432 22                  2333457778


Q ss_pred             cc-eEee--CCEEEe
Q 030327          144 FP-QLYI--EGEFFG  155 (179)
Q Consensus       144 vP-~VfI--dG~~IG  155 (179)
                      +| .+++  +|+.++
T Consensus       118 ~P~~~~id~~G~i~~  132 (156)
T 1kng_A          118 VPETFVVGREGTIVY  132 (156)
T ss_dssp             SCEEEEECTTSBEEE
T ss_pred             cCeEEEEcCCCCEEE
Confidence            99 5566  676543

>2yv9_A Chloride intracellular channel EXC-4; chloride ION channel, CLIC, GST fold, metal transport; 1.60A {Caenorhabditis elegans}

Probab=97.26  E-value=0.0011  Score=55.05  Aligned_cols=77  Identities=13%  Similarity=-0.022  Sum_probs=59.3

Q ss_pred             CCcEEEEEeeC-CC---CCCCchHHHHHHHH----HhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CCEEEee
Q 030327           87 GNKVVLFMKGT-KD---FPQCGFSHTVVQIL----KSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEFFGG  156 (179)
Q Consensus        87 ~~~Vvlysk~t-~~---~p~Cp~C~~ak~lL----~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG~~IGG  156 (179)
                      ...+.+|.+.. .+   ...||||.+++-+|    +..|++|+.+.|+-...  . +++.+...++|.+..  ||..|..
T Consensus        17 ~~~i~Ly~~~~~~~~~~~~~cP~~~rv~~~L~lL~e~kgi~ye~~~vd~~~~--p-fl~~nP~GkVPvL~d~~~g~~l~E   93 (291)
T 2yv9_A           17 KPLLELYVKASGIDARRIGADLFCQEFWMELYALYEIGVARVEVKTVNVNSE--A-FKKNFLGAQPPIMIEEEKELTYTD   93 (291)
T ss_dssp             SCEEEEEEEBCSSCTTSBCCCHHHHHHHHHHHHHHHTTSCEEEEEEECTTCH--H-HHHHHTTCCSCEEEEGGGTEEECS
T ss_pred             CCCEEEEEecCCCCcCccCcChHHHHHHHHHHHHHHhcCceeEEEEeCCCCh--h-HHhcCCCCCCCEEEEcCCCeEEeC
Confidence            45699998862 11   12699999999888    78899999988864321  2 666777889999999  8999988


Q ss_pred             cHHHHHHHHc
Q 030327          157 CDITVEAYKN  166 (179)
Q Consensus       157 ~del~~l~~~  166 (179)
                      ...+.++.++
T Consensus        94 S~aI~~YL~~  103 (291)
T 2yv9_A           94 NREIEGRIFH  103 (291)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888887654

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.24  E-value=0.00055  Score=49.86  Aligned_cols=58  Identities=12%  Similarity=0.108  Sum_probs=39.3

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhc-------CCCeEEEEcCCCHHHHHHHHHhcCCC------CcceEee--CCEE
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNILENEMLRQGLKEYSSWP------TFPQLYI--EGEF  153 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-------gv~y~~vdV~~d~~~~~~L~~~sg~~------tvP~VfI--dG~~  153 (179)
                      .++|+...    +||++|+++...|++.       ++.+..+|+++++++.+.    .+..      .+|.+++  +|+.
T Consensus        28 ~vlv~f~a----~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~----~~v~~~~~~~~~Pt~~~~~~G~~   99 (137)
T 2dj0_A           28 TWIVEFFA----NWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTR----YKVSTSPLTKQLPTLILFQGGKE   99 (137)
T ss_dssp             CEEEEECC----TTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTTCHHHHHH----TTCCCCSSSSCSSEEEEESSSSE
T ss_pred             EEEEEEEC----CCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCccCHHHHHH----ccCcccCCcCCCCEEEEEECCEE
Confidence            34444443    6999999888877552       467777888777765433    4555      8898844  7775


Q ss_pred             E
Q 030327          154 F  154 (179)
Q Consensus       154 I  154 (179)
                      +
T Consensus       100 ~  100 (137)
T 2dj0_A          100 A  100 (137)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=97.23  E-value=0.0048  Score=48.25  Aligned_cols=72  Identities=13%  Similarity=0.077  Sum_probs=43.9

Q ss_pred             HHhhhc-CCcEEEEEeeCCCCCCCchHHHHHH-HH------Hhc--CCCeEEEEcCCCHHHHHHHH----HhcCCCCcce
Q 030327           81 LDKVVT-GNKVVLFMKGTKDFPQCGFSHTVVQ-IL------KSL--NAPFETVNILENEMLRQGLK----EYSSWPTFPQ  146 (179)
Q Consensus        81 l~~li~-~~~Vvlysk~t~~~p~Cp~C~~ak~-lL------~~~--gv~y~~vdV~~d~~~~~~L~----~~sg~~tvP~  146 (179)
                      ++.... ..+|+|....    +||++|+.+.. .+      +.+  ++-+..+|+++++++.+.+.    ..+|...+|.
T Consensus        32 ~~~A~~~~KpVlvdF~A----~WC~~Ck~m~~~~f~~~~va~~l~~~fv~ikVD~de~~~l~~~y~~~~q~~~gv~g~Pt  107 (173)
T 3ira_A           32 FEKARKENKPVFLSIGY----STCHWCHMMAHESFEDEEVAGLMNEAFVSIKVDREERPDIDNIYMTVCQIILGRGGWPL  107 (173)
T ss_dssp             HHHHHHHTCCEEEEEEC----TTCHHHHHHHHHTTTCHHHHHHHHHHCEEEEEETTTCHHHHHHHHHHHHHHHSCCCSSE
T ss_pred             HHHHHHhCCCEEEeccc----chhHhhccccccccCCHHHHHHHHhcCceeeeCCcccCcHHHHHHHHHHHHcCCCCCcc
Confidence            444443 4456665554    69999998654 22      112  35566778888877755443    2347788887


Q ss_pred             E-ee--CCEEEee
Q 030327          147 L-YI--EGEFFGG  156 (179)
Q Consensus       147 V-fI--dG~~IGG  156 (179)
                      + |+  +|+.+.+
T Consensus       108 ~v~l~~dG~~v~~  120 (173)
T 3ira_A          108 NIIMTPGKKPFFA  120 (173)
T ss_dssp             EEEECTTSCEEEE
T ss_pred             eeeECCCCCceee
Confidence            6 44  6877743

>3gx0_A GST-like protein YFCG; transferase, glutathione, glutathione disulfide, disulfide bond oxidoreductase; HET: GDS; 2.30A {Escherichia coli}

Probab=97.23  E-value=0.00098  Score=51.66  Aligned_cols=70  Identities=10%  Similarity=0.116  Sum_probs=55.9

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC--HHHHHHHHHhcCCCCcceEeeC---C----EEEeecHHH
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN--EMLRQGLKEYSSWPTFPQLYIE---G----EFFGGCDIT  160 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d--~~~~~~L~~~sg~~tvP~VfId---G----~~IGG~del  160 (179)
                      +.||..     + ||+|.+++-+|...|++|+.+.|+-.  +....++.+.+...++|.+..+   |    ..+.+...+
T Consensus         2 ~~Ly~~-----~-s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~~dG~~~~l~eS~aI   75 (215)
T 3gx0_A            2 IDLYFA-----P-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAI   75 (215)
T ss_dssp             EEEEEC-----S-SHHHHHHHHHHHHHTCCEEEEECCTTTTGGGSHHHHTTCTTSCSCEEEESSCTTCCSCEEEESHHHH
T ss_pred             eEEEeC-----C-CCChHHHHHHHHHcCCCcEEEecCCCCCCCCChHHHHhCCCCCCCEEEeCCCCCCCCceEEEcHHHH
Confidence            567866     4 99999999999999999999887532  3344567777778899999998   4    788888887


Q ss_pred             HHHHH
Q 030327          161 VEAYK  165 (179)
Q Consensus       161 ~~l~~  165 (179)
                      .++..
T Consensus        76 ~~yL~   80 (215)
T 3gx0_A           76 LLYLA   80 (215)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77644

>2yv7_A CG10997-PA, LD46306P, CLIC; dmclic, chloride ION channel, GST fold, metal transport; 1.70A {Drosophila melanogaster}

Probab=97.22  E-value=0.00077  Score=55.23  Aligned_cols=81  Identities=11%  Similarity=0.050  Sum_probs=57.7

Q ss_pred             hcCCcEEEEEeeCC-C---CCCCchHHHHHHHH----HhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEee
Q 030327           85 VTGNKVVLFMKGTK-D---FPQCGFSHTVVQIL----KSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGG  156 (179)
Q Consensus        85 i~~~~Vvlysk~t~-~---~p~Cp~C~~ak~lL----~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG  156 (179)
                      ..+..+++|.+... +   ...||||.+++-+|    +..|++|+.+.|+-.. ..+++.+.+...++|.+..||..+..
T Consensus        18 ~~~~~i~Ly~~~~s~~~~~~~~cP~~~rv~~~L~ll~~~~gi~ye~~~v~~~~-~~~~~~~~nP~gkVPvL~d~g~~l~E   96 (260)
T 2yv7_A           18 FDVPEIELIIKASTIDGRRKGACLFCQEYFMDLYLLAELKTISLKVTTVDMQK-PPPDFRTNFEATHPPILIDNGLAILE   96 (260)
T ss_dssp             GCCCEEEEEEEBCTTTSSSBCCCHHHHHHHHHHHHHHHTTSSEEEEEEECTTS-CC-----CCTTCCSCEEEETTEEECS
T ss_pred             CCCccEEEEEeccCCCCCccCcChHHHHHHHHHHhHHHhcCCCceEEEecccc-CCHHHHhhCCCCCCCEEEECCEEEeC
Confidence            33557999977522 1   13699999999999    8889999998875321 12345667778899999999999988


Q ss_pred             cHHHHHHHHc
Q 030327          157 CDITVEAYKN  166 (179)
Q Consensus       157 ~del~~l~~~  166 (179)
                      ...+.++.++
T Consensus        97 S~aI~~YL~~  106 (260)
T 2yv7_A           97 NEKIERHIMK  106 (260)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888877654

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=97.21  E-value=0.00033  Score=56.43  Aligned_cols=81  Identities=17%  Similarity=0.215  Sum_probs=49.2

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCEEEeecHHH
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEFFGGCDIT  160 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~~IGG~del  160 (179)
                      ..|+|+...    +||++|+.+...|.++     ++.|..+|++ +    ..+....+...+|.+  |.+|+.++.+.-.
T Consensus       121 k~vvV~F~a----~wC~~C~~l~p~l~~la~~~~~v~f~~vd~~-~----~~l~~~~~i~~~PTl~~~~~G~~v~~~~G~  191 (217)
T 2trc_P          121 TTIVVNIYE----DGVRGCDALNSSLECLAAEYPMVKFCKIRAS-N----TGAGDRFSSDVLPTLLVYKGGELISNFISV  191 (217)
T ss_dssp             CEEEEEEEC----TTSTTHHHHHHHHHHHHTTCTTSEEEEEEHH-H----HTCSTTSCGGGCSEEEEEETTEEEEEETTG
T ss_pred             cEEEEEEEC----CCCccHHHHHHHHHHHHHHCCCeEEEEEECC-c----HHHHHHCCCCCCCEEEEEECCEEEEEEeCC
Confidence            456666654    7999999999999774     4567777774 2    234444566778876  5589877543322


Q ss_pred             HHH----HHcccHHHHHHhhh
Q 030327          161 VEA----YKNGELQELLEKAL  177 (179)
Q Consensus       161 ~~l----~~~GeL~~~L~~a~  177 (179)
                      ...    ....+|.++|.+.|
T Consensus       192 ~~~~g~~~~~~~Le~~L~~~g  212 (217)
T 2trc_P          192 AEQFAEDFFAADVESFLNEYG  212 (217)
T ss_dssp             GGGSCSSCCHHHHHHHHHTTT
T ss_pred             cccCcccCCHHHHHHHHHHcC
Confidence            211    00134666666554

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=97.21  E-value=0.0018  Score=45.80  Aligned_cols=64  Identities=17%  Similarity=0.271  Sum_probs=41.7

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHH-HHH-----------------HHHHhcCCCC
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEM-LRQ-----------------GLKEYSSWPT  143 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~-~~~-----------------~L~~~sg~~t  143 (179)
                      ...++|+..+    +||++|.+....|.+.     ++.+..++++.+++ +++                 .+.+..|...
T Consensus        24 ~k~~lv~f~~----~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~   99 (136)
T 1lu4_A           24 GKPAVLWFWT----PWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPW   99 (136)
T ss_dssp             TSCEEEEEEC----TTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCS
T ss_pred             CCEEEEEEEC----CcChhHHHHHHHHHHHHHHCCCcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHhcCCCC
Confidence            3445554444    6999999888777554     57778888877433 222                 2333457788


Q ss_pred             cceEee---CCEEE
Q 030327          144 FPQLYI---EGEFF  154 (179)
Q Consensus       144 vP~VfI---dG~~I  154 (179)
                      +|.+++   +|+.+
T Consensus       100 ~P~~~lid~~G~i~  113 (136)
T 1lu4_A          100 QPAFVFYRADGTST  113 (136)
T ss_dssp             SSEEEEECTTSCEE
T ss_pred             CCEEEEECCCCcEE
Confidence            999876   67763

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=97.21  E-value=0.00058  Score=49.76  Aligned_cols=65  Identities=14%  Similarity=0.262  Sum_probs=41.2

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHh----c---CCCeEEEEcCCCHH-HHH------------------HHHHhcC
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKS----L---NAPFETVNILENEM-LRQ------------------GLKEYSS  140 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~----~---gv~y~~vdV~~d~~-~~~------------------~L~~~sg  140 (179)
                      ...++|+..+    +||++|......|.+    +   ++.+..++++.+.+ +++                  .+.+..|
T Consensus        30 gk~~lv~f~~----~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  105 (152)
T 2lja_A           30 GKYIYIDVWA----TWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYL  105 (152)
T ss_dssp             TSEEEEEECC----SSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTT
T ss_pred             CCEEEEEEEC----CcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcC
Confidence            3445555554    699999976665543    2   35566777776642 222                  3445567


Q ss_pred             CCCcceEee---CCEEEe
Q 030327          141 WPTFPQLYI---EGEFFG  155 (179)
Q Consensus       141 ~~tvP~VfI---dG~~IG  155 (179)
                      ...+|.+++   +|+.+.
T Consensus       106 v~~~P~~~lid~~G~i~~  123 (152)
T 2lja_A          106 INGIPRFILLDRDGKIIS  123 (152)
T ss_dssp             CCSSCCEEEECTTSCEEE
T ss_pred             cCCCCEEEEECCCCeEEE
Confidence            778998876   787776

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=97.19  E-value=0.0012  Score=51.59  Aligned_cols=55  Identities=18%  Similarity=0.371  Sum_probs=39.7

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhc----------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CCEE
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSL----------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEF  153 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~----------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG~~  153 (179)
                      ++.|+.     +||++|++....|++.          ++.+..+|+++++++.    +..|...+|.+++  +|+.
T Consensus       138 ~v~F~a-----~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~~~~l~----~~~~v~~~Pt~~~~~~G~~  204 (226)
T 1a8l_A          138 ILVFVT-----PTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWA----DQYNVMAVPKIVIQVNGED  204 (226)
T ss_dssp             EEEEEC-----SSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHH----HHTTCCSSCEEEEEETTEE
T ss_pred             EEEEeC-----CCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEcccCHHHH----HhCCCcccCeEEEEeCCce
Confidence            455555     6999999998888652          5778888888776643    3457778898866  5543

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=97.17  E-value=0.0022  Score=46.30  Aligned_cols=66  Identities=21%  Similarity=0.304  Sum_probs=43.1

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc--------CCCeEEEEcCCCHH--------------------HHHHHHHh
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL--------NAPFETVNILENEM--------------------LRQGLKEY  138 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~--------gv~y~~vdV~~d~~--------------------~~~~L~~~  138 (179)
                      ...++|+...    +||++|+.....|.++        ++.+..++++.+.+                    ....+.+.
T Consensus        28 gk~vll~F~a----~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (144)
T 1o73_A           28 GKTVFLYFSA----SWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKT  103 (144)
T ss_dssp             TCEEEEEEEC----TTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHH
T ss_pred             CCEEEEEEEC----cCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHHHH
Confidence            3455555554    5999999888777543        45577777776542                    23445555


Q ss_pred             cCCCCcceEee----CCEEEee
Q 030327          139 SSWPTFPQLYI----EGEFFGG  156 (179)
Q Consensus       139 sg~~tvP~VfI----dG~~IGG  156 (179)
                      .|...+|.+++    +|+.+.-
T Consensus       104 ~~v~~~Pt~~lid~~~G~i~~~  125 (144)
T 1o73_A          104 FGVESIPTLITINADTGAIIGT  125 (144)
T ss_dssp             HTCCSSSEEEEEETTTCCEEES
T ss_pred             cCCCCCCEEEEEECCCCeEEec
Confidence            67888998854    5777653

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=97.12  E-value=0.0027  Score=46.19  Aligned_cols=66  Identities=18%  Similarity=0.180  Sum_probs=43.2

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc--------CCCeEEEEcCCCH--------------------HHHHHHHHh
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL--------NAPFETVNILENE--------------------MLRQGLKEY  138 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~--------gv~y~~vdV~~d~--------------------~~~~~L~~~  138 (179)
                      ...++|+...    +||++|+.....|.++        ++.+..++++.+.                    +....+.+.
T Consensus        28 gk~vll~F~a----~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  103 (146)
T 1o8x_A           28 GKLVFFYFSA----SWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKH  103 (146)
T ss_dssp             TCEEEEEEEC----TTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHH
T ss_pred             CCEEEEEEEc----cCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHHHHH
Confidence            4455665554    6999999887776542        4557777777654                    223455666


Q ss_pred             cCCCCcceEee----CCEEEee
Q 030327          139 SSWPTFPQLYI----EGEFFGG  156 (179)
Q Consensus       139 sg~~tvP~VfI----dG~~IGG  156 (179)
                      .|...+|.+++    +|+.+.-
T Consensus       104 ~~v~~~Pt~~lid~~~G~i~~~  125 (146)
T 1o8x_A          104 FNVESIPTLIGVDADSGDVVTT  125 (146)
T ss_dssp             TTCCSSSEEEEEETTTCCEEES
T ss_pred             hCCCCCCEEEEEECCCCeEEEe
Confidence            68888998743    5776653

>1oe8_A Glutathione S-transferase; schistosomiasis, detoxifying enzyme, prostaglandin D2 synthase, vaccine candidate; HET: GSH; 1.65A {Schistosoma haematobium} SCOP: a.45.1.1 c.47.1.5 PDB: 1oe7_A* 2c80_A* 2ca8_A* 2f8f_A* 2c8u_A 2caq_A* 2cai_A* 1u3i_A*

Probab=97.10  E-value=0.001  Score=51.46  Aligned_cols=72  Identities=11%  Similarity=0.099  Sum_probs=54.6

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEE-----EeecHHHH
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEF-----FGGCDITV  161 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~-----IGG~del~  161 (179)
                      ...+++|...     .|++|.+++-+|...|++|+.+.++-..  ...+...+...++|.+..||..     +.+...+.
T Consensus         3 m~~~~Ly~~~-----~s~~~~~v~~~L~~~gi~~e~~~v~~~~--~~~~~~~~P~g~vP~L~~~~~~g~~~~l~eS~aI~   75 (211)
T 1oe8_A            3 GDHIKVIYFN-----GRGRAESIRMTLVAAGVNYEDERISFQD--WPKIKPTIPGGRLPAVKITDNHGHVKWMVESLAIA   75 (211)
T ss_dssp             -CEEEEEESC-----TTSTTHHHHHHHHHTTCCCEEEECCTTT--HHHHGGGSTTSCSCEEEEECTTCCEEEEESHHHHH
T ss_pred             CCceEEEEeC-----CCChHHHHHHHHHHcCCCceEEEechHh--HHHhcccCCCCCCCEEEECCccccceeeccHHHHH
Confidence            3468888873     8999999999999999999999886422  1334555677899999887654     77777777


Q ss_pred             HHHH
Q 030327          162 EAYK  165 (179)
Q Consensus       162 ~l~~  165 (179)
                      ++..
T Consensus        76 ~yL~   79 (211)
T 1oe8_A           76 RYMA   79 (211)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6654

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=97.09  E-value=0.0014  Score=47.20  Aligned_cols=73  Identities=19%  Similarity=0.214  Sum_probs=45.5

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc-------CCCeEEEEcCCC-HHHHHH--------------------HHHh
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNILEN-EMLRQG--------------------LKEY  138 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-------gv~y~~vdV~~d-~~~~~~--------------------L~~~  138 (179)
                      ...++|+..+    +||++|......|.+.       ++.+..++++.+ +++++.                    +.+.
T Consensus        31 gk~vll~f~~----~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  106 (148)
T 3hcz_A           31 AKYTILFFWD----SQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKIT  106 (148)
T ss_dssp             CSEEEEEEEC----GGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCHHHH
T ss_pred             CCEEEEEEEC----CCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhHHHh
Confidence            3445555554    5999999777666443       466777788755 444443                    3444


Q ss_pred             cCCCCcceEee---CCEEEe---ecHHHHHH
Q 030327          139 SSWPTFPQLYI---EGEFFG---GCDITVEA  163 (179)
Q Consensus       139 sg~~tvP~VfI---dG~~IG---G~del~~l  163 (179)
                      .|...+|.+++   +|+.+.   |..++.++
T Consensus       107 ~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~  137 (148)
T 3hcz_A          107 YDIYATPVLYVLDKNKVIIAKRIGYENLDDF  137 (148)
T ss_dssp             HCCCSSCEEEEECTTCBEEEESCCGGGHHHH
T ss_pred             cCcCCCCEEEEECCCCcEEEecCCHHHHHHH
Confidence            56778999876   787664   33444444

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=97.09  E-value=0.00098  Score=47.97  Aligned_cols=68  Identities=12%  Similarity=0.075  Sum_probs=43.7

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHh----c----CCCeEEEEcCCCHH-HH--------------------HHHHH
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKS----L----NAPFETVNILENEM-LR--------------------QGLKE  137 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~----~----gv~y~~vdV~~d~~-~~--------------------~~L~~  137 (179)
                      ...++|+..+    +||++|......|.+    +    ++.+..++++.+.+ ++                    ..+.+
T Consensus        33 gk~vll~F~~----~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  108 (148)
T 3fkf_A           33 NRYLLLNFWA----SWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAK  108 (148)
T ss_dssp             TSEEEEEEEC----GGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHH
T ss_pred             CcEEEEEEEC----CCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHH
Confidence            3445555554    599999988777644    3    24566666666542 22                    24455


Q ss_pred             hcCCCCcceEee---CCEEEeecH
Q 030327          138 YSSWPTFPQLYI---EGEFFGGCD  158 (179)
Q Consensus       138 ~sg~~tvP~VfI---dG~~IGG~d  158 (179)
                      ..|...+|.+++   +|+.++...
T Consensus       109 ~~~v~~~P~~~lid~~G~i~~~~~  132 (148)
T 3fkf_A          109 QYAILTLPTNILLSPTGKILARDI  132 (148)
T ss_dssp             HTTCCSSSEEEEECTTSBEEEESC
T ss_pred             hcCCCCcCEEEEECCCCeEEEecC
Confidence            568889999755   788887654

>4ecj_A Glutathione S-transferase; transferase-like protein, transcription regulation; HET: GSH; 1.76A {Pseudomonas aeruginosa} PDB: 4eci_A*

Probab=97.08  E-value=0.0012  Score=52.74  Aligned_cols=71  Identities=10%  Similarity=0.054  Sum_probs=55.9

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCC--CHHHHHHHHHhcCCCCcceEeeC-C--EEEeecHHHHHHH
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE--NEMLRQGLKEYSSWPTFPQLYIE-G--EFFGGCDITVEAY  164 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~--d~~~~~~L~~~sg~~tvP~VfId-G--~~IGG~del~~l~  164 (179)
                      ++||..     + ||+|.+++-+|...|++|+.+.|+-  .+....++.+.+...++|.+..+ |  ..+.+...+.++.
T Consensus         4 ~~Ly~~-----~-sp~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vPvL~~~dg~~~~l~eS~aI~~YL   77 (244)
T 4ecj_A            4 IDLYTA-----A-TPNGHKVSIALEEMGLPYRVHALSFDKKEQKAPEFLRINPNGRIPAIVDRDNDDFAVFESGAILIYL   77 (244)
T ss_dssp             EEEEEC-----S-SHHHHHHHHHHHHHTCCEEEEECCGGGTGGGSHHHHTTCTTCCSCEEEEGGGTTEEEESHHHHHHHH
T ss_pred             EEEecC-----C-CcCHHHHHHHHHHcCCCceEEEecCCCCCcCCHHHHhcCCCCCCCEEEECCCCeEEEecHHHHHHHH
Confidence            778876     4 9999999999999999999988853  22334567777788899999986 4  4888888777765


Q ss_pred             Hc
Q 030327          165 KN  166 (179)
Q Consensus       165 ~~  166 (179)
                      ++
T Consensus        78 ~~   79 (244)
T 4ecj_A           78 AE   79 (244)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2x64_A Glutathione-S-transferase; detoxification enzyme; HET: GSH; 2.30A {Xylella fastidiosa}

Probab=97.07  E-value=0.0012  Score=50.80  Aligned_cols=72  Identities=11%  Similarity=0.104  Sum_probs=55.7

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHc
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKN  166 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~  166 (179)
                      .+.+|..     + +++|.+++-+|...|++|+.+.|+-......++.+.+...++|.+..||..+.+...+.++.++
T Consensus         2 ~~~Ly~~-----~-~s~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~~   73 (207)
T 2x64_A            2 HMKLYIM-----P-GACSLADHILLRWSGSSFDLQFLDHQSMKAPEYLALNPSGAVPALQVGDWVLTQNAAILNYITD   73 (207)
T ss_dssp             CEEEEEC-----T-TSTTHHHHHHHHHHTCCEEEEECCTTTTSSHHHHTTCTTCCSCEEEETTEEECCHHHHHHHHHH
T ss_pred             eEEEEcC-----C-CCcHHHHHHHHHHcCCCcceEEecccccCChhHHhcCCCCcCCeEeECCEEEeeHHHHHHHHHH
Confidence            4678886     2 4579999999999999999998864322224556677778999999999999998888776543

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=97.07  E-value=0.0042  Score=46.00  Aligned_cols=36  Identities=17%  Similarity=0.377  Sum_probs=24.2

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcC
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNIL  126 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~  126 (179)
                      ...++|+..+    .||++|.+....|.++     ++.+..++++
T Consensus        37 gk~~lv~F~~----~~C~~C~~~~~~l~~l~~~~~~v~vv~i~~d   77 (165)
T 3ha9_A           37 GDVVILWFMA----AWCPSCVYMADLLDRLTEKYREISVIAIDFW   77 (165)
T ss_dssp             SSEEEEEEEC----TTCTTHHHHHHHHHHHHHHCTTEEEEEEECC
T ss_pred             CCEEEEEEEC----CCCcchhhhHHHHHHHHHHcCCcEEEEEEec
Confidence            3445554444    6999999888777553     5566677776

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=97.05  E-value=0.0014  Score=51.81  Aligned_cols=68  Identities=19%  Similarity=0.262  Sum_probs=45.3

Q ss_pred             HHhhhcC---CcEEEEEeeC---CCCCCCchHHHHHHHHHhc-----------CCCeEEEEcCCCHHHHHHHHHhcCCCC
Q 030327           81 LDKVVTG---NKVVLFMKGT---KDFPQCGFSHTVVQILKSL-----------NAPFETVNILENEMLRQGLKEYSSWPT  143 (179)
Q Consensus        81 l~~li~~---~~Vvlysk~t---~~~p~Cp~C~~ak~lL~~~-----------gv~y~~vdV~~d~~~~~~L~~~sg~~t  143 (179)
                      .++++..   ..|+|+...+   ++++||+.|+.+...|++.           ++.|..+|+++++++.+.    .|-.+
T Consensus        28 F~~~v~~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~~~la~~----~~I~s  103 (178)
T 3ga4_A           28 YPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEVPQLVKD----LKLQN  103 (178)
T ss_dssp             HHHHTTCCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTCHHHHHH----TTCCS
T ss_pred             HHHHHcccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccCHHHHHH----cCCCC
Confidence            4445543   2355555542   3457999999999888652           356889999988776544    57778


Q ss_pred             cceE--eeCCE
Q 030327          144 FPQL--YIEGE  152 (179)
Q Consensus       144 vP~V--fIdG~  152 (179)
                      +|.+  |-+|.
T Consensus       104 iPtl~~F~~g~  114 (178)
T 3ga4_A          104 VPHLVVYPPAE  114 (178)
T ss_dssp             SCEEEEECCCC
T ss_pred             CCEEEEEcCCC
Confidence            9988  44664

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=97.04  E-value=0.0073  Score=45.61  Aligned_cols=45  Identities=16%  Similarity=0.192  Sum_probs=29.0

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHh-------cCC------CeEEEEcCC-CHHHHHHH
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKS-------LNA------PFETVNILE-NEMLRQGL  135 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~-------~gv------~y~~vdV~~-d~~~~~~L  135 (179)
                      ...++|+...    +||++|......|.+       .++      .+..|+++. +++..+.+
T Consensus        59 gk~vlv~F~a----~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~~~  117 (183)
T 3lwa_A           59 NQVVILNAWG----QWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDF  117 (183)
T ss_dssp             TSEEEEEEEC----TTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCCCHHHHHHH
T ss_pred             CCEEEEEEEC----CcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHHHH
Confidence            4456665555    699999977766644       357      778888887 55444443

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=97.03  E-value=0.0023  Score=50.12  Aligned_cols=61  Identities=20%  Similarity=0.365  Sum_probs=42.6

Q ss_pred             cCCcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CCEEE
Q 030327           86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEFF  154 (179)
Q Consensus        86 ~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG~~I  154 (179)
                      ....++|+...    +||++|+.....|.+.      .+.+..+|+++++++.    ...|...+|.+++  +|+.+
T Consensus       113 ~~~~vlv~F~a----~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~~~~~~l~----~~~~v~~~Pt~~~~~~G~~~  181 (210)
T 3apq_A          113 SGELWFVNFYS----PGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLC----RMKGVNSYPSLFIFRSGMAA  181 (210)
T ss_dssp             HSCCEEEEEEC----TTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHHHH----HHTTCCSSSEEEEECTTSCC
T ss_pred             cCCcEEEEEeC----CCChhHHHHHHHHHHHHHHhcCceEEEEEECCccHHHH----HHcCCCcCCeEEEEECCCce
Confidence            34455555554    6999999999888653      3668888888876543    3457778998865  77643

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=96.98  E-value=0.0031  Score=45.64  Aligned_cols=66  Identities=17%  Similarity=0.188  Sum_probs=43.1

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc--------CCCeEEEEcCCCHH--------------------HHHHHHHh
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL--------NAPFETVNILENEM--------------------LRQGLKEY  138 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~--------gv~y~~vdV~~d~~--------------------~~~~L~~~  138 (179)
                      ...|+|+...    +||++|++....|.++        ++.+..++++.+.+                    ....+.+.
T Consensus        28 gk~vll~F~a----~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  103 (144)
T 1i5g_A           28 GKTVFFYFSA----SWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTG  103 (144)
T ss_dssp             TSEEEEEEEC----TTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHH
T ss_pred             CCEEEEEEEC----CCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHHHHH
Confidence            4456666655    6999999888777543        45566777776532                    23455556


Q ss_pred             cCCCCcceEe-e---CCEEEee
Q 030327          139 SSWPTFPQLY-I---EGEFFGG  156 (179)
Q Consensus       139 sg~~tvP~Vf-I---dG~~IGG  156 (179)
                      .|...+|.++ +   +|+.+.-
T Consensus       104 ~~v~~~P~~~lid~~~G~i~~~  125 (144)
T 1i5g_A          104 FDVKSIPTLVGVEADSGNIITT  125 (144)
T ss_dssp             TTCCSSSEEEEEETTTCCEEES
T ss_pred             cCCCCCCEEEEEECCCCcEEec
Confidence            6888899874 3   4776653

>1gsu_A GST, CGSTM1-1, class-MU glutathione S-transferase; detoxification enzyme, S-hexyl glutathione; HET: GTX; 1.94A {Gallus gallus} SCOP: a.45.1.1 c.47.1.5 PDB: 1c72_A*

Probab=96.98  E-value=0.0025  Score=49.88  Aligned_cols=72  Identities=14%  Similarity=0.149  Sum_probs=53.7

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCH----HHHHHHHHhc----CCCCcceEeeCCEEEeecHHHH
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENE----MLRQGLKEYS----SWPTFPQLYIEGEFFGGCDITV  161 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~----~~~~~L~~~s----g~~tvP~VfIdG~~IGG~del~  161 (179)
                      +.+|..     +.|++|.+++-+|...|++|+.+.|+-..    ...+.+....    ...++|.+..||..+.....+.
T Consensus         2 ~~L~~~-----~~~~~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~d~g~~l~eS~aI~   76 (219)
T 1gsu_A            2 VTLGYW-----DIRGLAHAIRLLLEYTETPYQERRYKAGPAPDFDPSDWTNEKEKLGLDFPNLPYLIDGDVKLTQSNAIL   76 (219)
T ss_dssp             EEEEEE-----SSSGGGHHHHHHHHHTTCCEEEEEECCCSTTSCCTHHHHTTGGGSCCSSCCSSEEEETTEEEESHHHHH
T ss_pred             cEEEEe-----CCCchhHHHHHHHHHcCCCceEEEeccCcccccchhhHhhhcccCCCCCCCCCEEEECCEEEecHHHHH
Confidence            457777     37999999999999999999988886321    1123443333    4568999998999999988887


Q ss_pred             HHHHc
Q 030327          162 EAYKN  166 (179)
Q Consensus       162 ~l~~~  166 (179)
                      ++..+
T Consensus        77 ~yL~~   81 (219)
T 1gsu_A           77 RYIAR   81 (219)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76543

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=96.98  E-value=0.00052  Score=52.52  Aligned_cols=71  Identities=8%  Similarity=0.136  Sum_probs=44.6

Q ss_pred             HHHHHHHhhhcC-CcEEEEEeeCCCCCCCchHHHHHHHHHhc-------CCCeEEEEcCCC-HHHHHHHHHhcCCCCcce
Q 030327           76 ELKSTLDKVVTG-NKVVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNILEN-EMLRQGLKEYSSWPTFPQ  146 (179)
Q Consensus        76 ~~~~~l~~li~~-~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-------gv~y~~vdV~~d-~~~~~~L~~~sg~~tvP~  146 (179)
                      +.++.++.+... .+|+|+...    +||++|+.+...+.+.       +..|..++|+.+ .+.    ....+...+|.
T Consensus        32 ~~~~al~~A~~~~KpVlV~F~A----~WC~~Ck~m~p~~~~~~~~~~~~~~~fv~V~vD~e~~~~----~~~~~v~~~PT  103 (151)
T 3ph9_A           32 TYEEGLFYAQKSKKPLMVIHHL----EDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHETTDK----NLSPDGQYVPR  103 (151)
T ss_dssp             SHHHHHHHHHHHTCCEEEEECC----TTCHHHHHHHHHHHHCHHHHHHHHHTCEEEEESSCCSCG----GGCTTCCCSSE
T ss_pred             CHHHHHHHHHHcCCcEEEEEEC----CCCHhHHHHHHHHhcCHHHHHHhhcCeEEEEecCCchhh----HhhcCCCCCCE
Confidence            455556665544 445555554    6999999988877542       347889999743 221    22335678898


Q ss_pred             Eee---CCEEE
Q 030327          147 LYI---EGEFF  154 (179)
Q Consensus       147 VfI---dG~~I  154 (179)
                      +++   +|+.+
T Consensus       104 ~~f~~~~G~~v  114 (151)
T 3ph9_A          104 IMFVDPSLTVR  114 (151)
T ss_dssp             EEEECTTSCBC
T ss_pred             EEEECCCCCEE
Confidence            854   56654

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=96.98  E-value=0.0031  Score=49.55  Aligned_cols=73  Identities=10%  Similarity=0.167  Sum_probs=48.4

Q ss_pred             CCHHHHHHHHhhh--c-CCcEEEEEeeCC-CCCCCchHHHHHHHHHhc--------CCCeEEEEcCCCHHHHHHHHHhcC
Q 030327           73 LTPELKSTLDKVV--T-GNKVVLFMKGTK-DFPQCGFSHTVVQILKSL--------NAPFETVNILENEMLRQGLKEYSS  140 (179)
Q Consensus        73 ~~~~~~~~l~~li--~-~~~Vvlysk~t~-~~p~Cp~C~~ak~lL~~~--------gv~y~~vdV~~d~~~~~~L~~~sg  140 (179)
                      .+.+..+.+++++  + ..+|+|...... |+|||++|+.....+.+.        ++.+..+|.++++++-    +..|
T Consensus         3 ~~~~~~~~l~~~~~~~~~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~----~~~~   78 (229)
T 2ywm_A            3 LNLDVRMQLKELAQKEFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEET----EKYG   78 (229)
T ss_dssp             SCHHHHHHHHHHHHHHCCSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTTTCHHHH----HHTT
T ss_pred             CCHHHHHHHHHHHHHhccCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCcccHHHH----HHcC
Confidence            3556666677766  1 345554444323 478999999988888765        3667788887776653    4457


Q ss_pred             CCCcceEee
Q 030327          141 WPTFPQLYI  149 (179)
Q Consensus       141 ~~tvP~VfI  149 (179)
                      -..+|.+.+
T Consensus        79 v~~~Ptl~~   87 (229)
T 2ywm_A           79 VDRVPTIVI   87 (229)
T ss_dssp             CCBSSEEEE
T ss_pred             CCcCcEEEE
Confidence            778898744

>3iso_A Putative glutathione transferase; GST; HET: GSH; 1.90A {Clonorchis sinensis}

Probab=96.96  E-value=0.0011  Score=51.80  Aligned_cols=72  Identities=11%  Similarity=0.033  Sum_probs=52.6

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcC--CCHHHHH-HHHHhcCCCCcceEeeCCEEEeecHHHHHHHHc
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNIL--ENEMLRQ-GLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKN  166 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~--~d~~~~~-~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~  166 (179)
                      +.||...     .|++|.+++-+|...|++|+.+.|+  ..++... .....+...++|.+..||..+.+...+.++..+
T Consensus         3 ~~Ly~~~-----~s~~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~~P~g~vP~L~d~~~~l~eS~aI~~yL~~   77 (218)
T 3iso_A            3 PVLGYWK-----IRGLAQPIRLLLEYVGDSYEEHSYGRCDGEKWQNDKHNLGLELPNLPYYKDGNFSLTQSLAILRYIAD   77 (218)
T ss_dssp             CEEEEES-----SSGGGHHHHHHHHHHTCCCEEEEECTTCHHHHHHHTTSSCCSSCCSSEEEETTEEEESHHHHHHHHHH
T ss_pred             cEEEEeC-----CCcchHHHHHHHHHcCCCceeeccCCCCHHHHHhhchhcCCCCCCCCeEEECCEEEecHHHHHHHHHH
Confidence            5677663     8999999999999999999999986  2222221 111123456899998888889988887776543

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=96.96  E-value=0.00084  Score=47.22  Aligned_cols=51  Identities=18%  Similarity=0.415  Sum_probs=35.7

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhc-----------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSL-----------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI  149 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI  149 (179)
                      ..++|+...    +||++|++....|++.           ++.+..+|+++++     +.+  +...+|.+++
T Consensus        26 ~~vlv~f~a----~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-----~~~--~v~~~Pt~~~   87 (121)
T 2djj_A           26 KDVLIEFYA----PWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND-----VPD--EIQGFPTIKL   87 (121)
T ss_dssp             SCEEEEEEC----SSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC-----CSS--CCSSSSEEEE
T ss_pred             CCEEEEEEC----CCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc-----ccc--ccCcCCeEEE
Confidence            345555554    6999999998888653           4667888887665     222  7778999855

>2fhe_A GST, glutathione S-transferase; transferase-substrate complex; HET: GSH; 2.30A {Fasciola hepatica} SCOP: a.45.1.1 c.47.1.5 PDB: 2wrt_A 1fhe_A*

Probab=96.95  E-value=0.0036  Score=48.75  Aligned_cols=73  Identities=14%  Similarity=0.044  Sum_probs=52.7

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC--HHHHHHHHHhc-CCCCcceEeeCCEEEeecHHHHHHHH
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN--EMLRQGLKEYS-SWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d--~~~~~~L~~~s-g~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      ++.+|...     .|++|.+++-+|...|++|+.+.|+-.  ++......... ...++|.+..||..+.....+.++..
T Consensus         1 ~~~L~y~~-----~~~~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~~P~g~vP~L~d~g~~l~eS~aI~~YL~   75 (216)
T 2fhe_A            1 PAKLGYWK-----IRGLQQPVRLLLEYLGEKYEEQIYERDDGEKWFSKKFELGLDLPNLPYYIDDKCKLTQSLAILRYIA   75 (216)
T ss_dssp             CEEEEEES-----SSTTTHHHHHHHHHTTCCEEEEEECTTCHHHHHHHTTTSCCSSCCSSEEECSSCEEESHHHHHHHHH
T ss_pred             CcEEEEcC-----CCchhHHHHHHHHHcCCCceEEeeCCCchhhhhccccccCCCCCCCCEEEECCEEEEeHHHHHHHHH
Confidence            35677773     799999999999999999999988642  22111111222 35689999988889998888877654


Q ss_pred             c
Q 030327          166 N  166 (179)
Q Consensus       166 ~  166 (179)
                      +
T Consensus        76 ~   76 (216)
T 2fhe_A           76 D   76 (216)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4id0_A Glutathione S-transferase-like protein YIBF; GST, enzyme function initiative, structural genomics; HET: GSF; 1.10A {Pseudomonas fluorescens} PDB: 4ibp_A*

Probab=96.95  E-value=0.00035  Score=54.07  Aligned_cols=72  Identities=13%  Similarity=0.183  Sum_probs=54.4

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEE--cCCCH-HHHHHHHHhcCCCCcceEe-eCCEEEeecHHHHHHHH
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVN--ILENE-MLRQGLKEYSSWPTFPQLY-IEGEFFGGCDITVEAYK  165 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vd--V~~d~-~~~~~L~~~sg~~tvP~Vf-IdG~~IGG~del~~l~~  165 (179)
                      +.+|..     +.||+|.+++-+|...|++|+.+.  +...+ ....++.+.....++|.+. .||..+.+...+.++.+
T Consensus         3 ~~Ly~~-----~~s~~~~~v~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~   77 (214)
T 4id0_A            3 LTLFHN-----PASPYVRKVMVLLHETGQLNRVALQASQLSPVAPDAALNQDNPLGKIPALRLDNGQVLYDSRVILDYLD   77 (214)
T ss_dssp             EEEEEC-----SSCHHHHHHHHHHHHHTCGGGEEEEECCCCSSSCCSSCCTTCTTCCSSEEECTTSCEECSHHHHHHHHH
T ss_pred             eEEecC-----CCCChHHHHHHHHHHcCCCcceEEeecccCccCCcHHHHhcCCCcCCCeEEecCCcEeecHHHHHHHHH
Confidence            678888     599999999999999999976554  43222 2223455666788999999 78988988888777654


Q ss_pred             c
Q 030327          166 N  166 (179)
Q Consensus       166 ~  166 (179)
                      +
T Consensus        78 ~   78 (214)
T 4id0_A           78 Q   78 (214)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=96.90  E-value=0.0046  Score=48.41  Aligned_cols=66  Identities=18%  Similarity=0.396  Sum_probs=45.0

Q ss_pred             HHhhhcCC-cEEEEEeeCCCCCCCchHHHHHHHHHhc-------C--CCeEEEEcCCCHHHHHHHHHhcCCCCcceEee-
Q 030327           81 LDKVVTGN-KVVLFMKGTKDFPQCGFSHTVVQILKSL-------N--APFETVNILENEMLRQGLKEYSSWPTFPQLYI-  149 (179)
Q Consensus        81 l~~li~~~-~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-------g--v~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI-  149 (179)
                      +++++..+ .++|+...    +||++|++....|.+.       +  +.+..+|++.+.++    .+..|...+|.+++ 
T Consensus        25 ~~~~~~~~~~v~v~F~a----~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~l----~~~~~v~~~Pt~~~~   96 (241)
T 3idv_A           25 FDNFVADKDTVLLEFYA----PWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVL----ASRFDVSGYPTIKIL   96 (241)
T ss_dssp             HHHHHTTCSEEEEEEEC----TTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCHHH----HHHTTCCSSSEEEEE
T ss_pred             HHHHHhcCCeEEEEEEC----CCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCCHHH----HHhcCCCcCCEEEEE
Confidence            33444444 45555554    7999999998877554       2  78889999888754    34457778898744 


Q ss_pred             -CCEEE
Q 030327          150 -EGEFF  154 (179)
Q Consensus       150 -dG~~I  154 (179)
                       +|+.+
T Consensus        97 ~~g~~~  102 (241)
T 3idv_A           97 KKGQAV  102 (241)
T ss_dssp             ETTEEE
T ss_pred             cCCCcc
Confidence             77665

>3c8e_A YGHU, glutathione S-transferase homologue; glutathione transferase homologue, E. coli; HET: GSH; 1.50A {Escherichia coli}

Probab=96.89  E-value=0.0026  Score=52.41  Aligned_cols=72  Identities=14%  Similarity=0.094  Sum_probs=56.4

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCC--CHHHHHHHHHhcCCCCcceEeeCC----EEEe
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILE--NEMLRQGLKEYSSWPTFPQLYIEG----EFFG  155 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~--d~~~~~~L~~~sg~~tvP~VfIdG----~~IG  155 (179)
                      ..+.||..      .||+|.+++-+|.+.      |++|+.+.|+-  .+....++.+.....++|++..+|    ..|.
T Consensus        43 ~~~~Ly~~------~sp~~~rvr~~L~e~~~~g~kgi~ye~~~v~~~~~e~~~~~~~~~nP~gkVPvL~~~~g~~~~~l~  116 (288)
T 3c8e_A           43 HPLQLYSL------GTPNGQKVTIMLEELLALGVTGAEYDAWLIRIGDGDQFSSGFVEVNPNSKIPALRDHTHNPPIRVF  116 (288)
T ss_dssp             SSEEEEEC------SSHHHHHHHHHHHHHHHTTCGGGCEEEEECCGGGTGGGBHHHHHHCTTCCSCEEEETTSSSCEEEE
T ss_pred             CceEEecC------CCCChHHHHHHHHHhhhcccCCCCcEEEEeccccccccCHHHHHhCCCCCCCEEEeCCCCCceEEe
Confidence            45889976      599999999999998      99999988853  222335666777788999999876    7888


Q ss_pred             ecHHHHHHHH
Q 030327          156 GCDITVEAYK  165 (179)
Q Consensus       156 G~del~~l~~  165 (179)
                      ....+.++..
T Consensus       117 ES~aI~~YL~  126 (288)
T 3c8e_A          117 ESGSILLYLA  126 (288)
T ss_dssp             SHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            8887777654

>2c4j_A Glutathione S-transferase MU 2; glutathione transferase, multigene family; HET: GSO; 1.35A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1xw5_A* 1ykc_A* 2ab6_A* 2gtu_A 3gtu_A 3gur_A* 1hna_A* 1hnb_A* 1hnc_A* 1xw6_A* 1xwk_A* 1yj6_A* 2f3m_A* 2dc5_A 1gtu_A 4gtu_A 6gsu_A* 6gsv_A* 6gsw_A* 2gst_A* ...

Probab=96.89  E-value=0.003  Score=49.15  Aligned_cols=72  Identities=15%  Similarity=0.161  Sum_probs=53.3

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCH--H--HHHHHHHhc----CCCCcceEeeCCEEEeecHHHH
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENE--M--LRQGLKEYS----SWPTFPQLYIEGEFFGGCDITV  161 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~--~--~~~~L~~~s----g~~tvP~VfIdG~~IGG~del~  161 (179)
                      +.+|..     +.|++|.+++-+|...|++|+.+.++-..  +  ..+.+....    ...++|.+..||..+.....+.
T Consensus         3 ~~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~g~P~g~vP~L~d~~~~l~eS~aI~   77 (218)
T 2c4j_A            3 MTLGYW-----NIRGLAHSIRLLLEYTDSSYEEKKYTMGDAPDYDRSQWLNEKFKLGLDFPNLPYLIDGTHKITQSNAIL   77 (218)
T ss_dssp             EEEEEE-----SSSGGGHHHHHHHHHTTCCEEEEEECCCCTTTTCCHHHHTTTTSSCCSSCCSSEEEETTEEEESHHHHH
T ss_pred             cEEEEe-----CCCchhHHHHHHHHHcCCCceEEEeecCcccccchhHHhhhccccCCCCCCCCEEEECCeEeeeHHHHH
Confidence            677777     38999999999999999999988886321  1  122333332    2568999998899999888877


Q ss_pred             HHHHc
Q 030327          162 EAYKN  166 (179)
Q Consensus       162 ~l~~~  166 (179)
                      ++.++
T Consensus        78 ~yL~~   82 (218)
T 2c4j_A           78 RYIAR   82 (218)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76543

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=96.87  E-value=0.0076  Score=46.24  Aligned_cols=17  Identities=12%  Similarity=0.249  Sum_probs=14.4

Q ss_pred             cCCCCcceEeeCCEEEe
Q 030327          139 SSWPTFPQLYIEGEFFG  155 (179)
Q Consensus       139 sg~~tvP~VfIdG~~IG  155 (179)
                      .|-..+|.++|||+.+-
T Consensus       148 ~gv~gtPt~~vng~~~~  164 (192)
T 3h93_A          148 YQVTGVPTMVVNGKYRF  164 (192)
T ss_dssp             HTCCSSSEEEETTTEEE
T ss_pred             hCCCCCCeEEECCEEEe
Confidence            37889999999998764

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=96.87  E-value=0.0098  Score=44.07  Aligned_cols=65  Identities=18%  Similarity=0.120  Sum_probs=41.6

Q ss_pred             cCCcEEEEEeeCCCCCCCchHHHHHHHHHhc---CCCeEEEEcCCCHH-HHHH------------------HHHhcCCCC
Q 030327           86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKSL---NAPFETVNILENEM-LRQG------------------LKEYSSWPT  143 (179)
Q Consensus        86 ~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~---gv~y~~vdV~~d~~-~~~~------------------L~~~sg~~t  143 (179)
                      +...++|+...    +||++|.+....|+++   ++.+..++++++++ +++.                  +.+..|...
T Consensus        50 ~gk~vll~F~a----~~C~~C~~~~~~l~~l~~~~v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  125 (168)
T 2b1k_A           50 QGKPVLLNVWA----TWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYG  125 (168)
T ss_dssp             CSSCEEEEEEC----TTCHHHHHHHHHHHHHHHTTCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTCHHHHHHTCCS
T ss_pred             CCCEEEEEEEC----CCCHHHHHHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHHcCCCCceeeECcchHHHHHcCccc
Confidence            44556666555    6999999887776543   78888888766543 2222                  223346778


Q ss_pred             cc-eEee--CCEEE
Q 030327          144 FP-QLYI--EGEFF  154 (179)
Q Consensus       144 vP-~VfI--dG~~I  154 (179)
                      +| .++|  +|+.+
T Consensus       126 ~P~~~lid~~G~i~  139 (168)
T 2b1k_A          126 APETFLIDGNGIIR  139 (168)
T ss_dssp             SSEEEEECTTSBEE
T ss_pred             cCEEEEECCCCeEE
Confidence            99 5566  46544

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=96.83  E-value=0.0022  Score=48.32  Aligned_cols=74  Identities=14%  Similarity=0.094  Sum_probs=42.1

Q ss_pred             HHHHHHhhhc-CCcEEEEEeeCCCCCCCchHHHH-------HHHHHhc--CCCeEEEEcCCCHHH---------------
Q 030327           77 LKSTLDKVVT-GNKVVLFMKGTKDFPQCGFSHTV-------VQILKSL--NAPFETVNILENEML---------------  131 (179)
Q Consensus        77 ~~~~l~~li~-~~~Vvlysk~t~~~p~Cp~C~~a-------k~lL~~~--gv~y~~vdV~~d~~~---------------  131 (179)
                      .++.++.... ...|+|+...    +||++|++.       ..+-+..  ++.+..+|++++.++               
T Consensus        36 ~~~~~~~a~~~gk~vlv~F~A----~WC~~C~~~~~~~~~~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~  111 (172)
T 3f9u_A           36 YDLGMEYARQHNKPVMLDFTG----YGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKTPLTEPVKIMENGTERTL  111 (172)
T ss_dssp             HHHHHHHHHHTTCCEEEEEEC----TTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEETTCCCEEEEEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHcCCeEEEEEEC----CCCHHHHHHHHHhcCCHHHHHHhcCCEEEEEEecCcccccchhhhhhhcchhhhh
Confidence            4444544433 3456665554    699999986       2222222  467777887655421               


Q ss_pred             -------HHHHHHhcCCCCcceE-ee--CCEEE
Q 030327          132 -------RQGLKEYSSWPTFPQL-YI--EGEFF  154 (179)
Q Consensus       132 -------~~~L~~~sg~~tvP~V-fI--dG~~I  154 (179)
                             ........|...+|.+ ++  +|+.+
T Consensus       112 ~~~~~~~~~~~~~~~~v~~~Pt~~lid~~G~~~  144 (172)
T 3f9u_A          112 RTVGDKWSYLQRVKFGANAQPFYVLIDNEGNPL  144 (172)
T ss_dssp             EEHHHHHHHHHHHHHSCCCSSEEEEECTTSCBS
T ss_pred             hhhhhhhhHHHHHHcCCCCcceEEEECCCCCEE
Confidence                   1111344577889987 44  57554

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=96.80  E-value=0.0068  Score=45.65  Aligned_cols=66  Identities=18%  Similarity=0.222  Sum_probs=43.7

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc--------CCCeEEEEcCCCHH-H-------------------HHHHHHh
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL--------NAPFETVNILENEM-L-------------------RQGLKEY  138 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~--------gv~y~~vdV~~d~~-~-------------------~~~L~~~  138 (179)
                      ...|+|+...    +||++|.+....|.++        ++.+..|+++.+.+ +                   ...+.+.
T Consensus        48 gk~vll~F~a----~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  123 (165)
T 3s9f_A           48 GKTVFFYFSA----SWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKK  123 (165)
T ss_dssp             TSEEEEEEEC----TTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHHHHH
T ss_pred             CCEEEEEEEC----CcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHHHHH
Confidence            4456665555    6999999888777543        45567777776643 1                   1455556


Q ss_pred             cCCCCcceEee---C-CEEEee
Q 030327          139 SSWPTFPQLYI---E-GEFFGG  156 (179)
Q Consensus       139 sg~~tvP~VfI---d-G~~IGG  156 (179)
                      .|...+|.+|+   + |+.+.-
T Consensus       124 ~~v~~~Pt~~lid~~~G~iv~~  145 (165)
T 3s9f_A          124 YSVESIPTLIGLNADTGDTVTT  145 (165)
T ss_dssp             TTCCSSSEEEEEETTTCCEEES
T ss_pred             cCCCCCCEEEEEeCCCCEEEec
Confidence            68888998865   3 777753

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=96.77  E-value=0.004  Score=45.40  Aligned_cols=64  Identities=13%  Similarity=0.182  Sum_probs=41.4

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhc----CCCeEEEEcC--CCHH-H--------------------HHHHHHhcC
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSL----NAPFETVNIL--ENEM-L--------------------RQGLKEYSS  140 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~----gv~y~~vdV~--~d~~-~--------------------~~~L~~~sg  140 (179)
                      ..++|+..+    +||++|......|.+.    ++.+..|+++  ++.+ +                    ...+.+..|
T Consensus        31 k~vll~f~~----~~C~~C~~~~~~l~~l~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  106 (154)
T 3ia1_A           31 KPAVIVFWA----SWCTVCKAEFPGLHRVAEETGVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFK  106 (154)
T ss_dssp             SSEEEEEEC----TTCHHHHHHHHHHHHHHHHHCCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSS
T ss_pred             CeEEEEEEc----ccChhHHHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHHhC
Confidence            345554444    5999999888777554    7888888883  3322 2                    234445567


Q ss_pred             CCCcceE-ee--CCEEEe
Q 030327          141 WPTFPQL-YI--EGEFFG  155 (179)
Q Consensus       141 ~~tvP~V-fI--dG~~IG  155 (179)
                      ...+|.+ +|  +|+.+.
T Consensus       107 v~~~P~~~lid~~G~i~~  124 (154)
T 3ia1_A          107 VLGQPWTFVVDREGKVVA  124 (154)
T ss_dssp             BCSSCEEEEECTTSEEEE
T ss_pred             CCcccEEEEECCCCCEEE
Confidence            7889994 55  676554

>4hz4_A Glutathione-S-transferase; enzyme function initiative; 1.62A {Actinobacillus pleuropneumoniae}

Probab=96.77  E-value=0.0033  Score=48.87  Aligned_cols=71  Identities=18%  Similarity=0.156  Sum_probs=55.7

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCH---HHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENE---MLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~---~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      .+++|..     +. ++|.+++-+|...|++|+.+.|+-..   ....++.+.+...++|.+..||..+.+...+.++..
T Consensus         3 ~~~Ly~~-----~~-~~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~yL~   76 (217)
T 4hz4_A            3 MITLHYL-----KQ-SCSHRIVWLLEALGLDYELKIYDRLEGTGFAPEELKAQHPLGKAPVLQDGDLVLAEGNAIIQHLL   76 (217)
T ss_dssp             CEEEEEE-----SS-STTHHHHHHHHHHTCCCEEEEECCCTTTCCCCHHHHTTSTTCCSCEEEETTEEEECHHHHHHHHH
T ss_pred             eEEEeec-----CC-CcHHHHHHHHHHcCCCceEEEEecCcccccCCHHHHhcCCCCCCCEEEECCEeeecHHHHHHHHH
Confidence            3778887     34 47999999999999999998885431   123456677778899999999999999888877653

>3lsz_A Glutathione S-transferase; xenobiotic, biodegradative metabolism, PSI2, NYSGXRC, structural genomics, protein structure initiative; HET: GSH; 1.70A {Rhodobacter sphaeroides}

Probab=96.76  E-value=0.0015  Score=51.00  Aligned_cols=71  Identities=15%  Similarity=0.174  Sum_probs=56.7

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC---------H----HHHHHHHHhcCCCCcceEeeCCEEEee
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN---------E----MLRQGLKEYSSWPTFPQLYIEGEFFGG  156 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d---------~----~~~~~L~~~sg~~tvP~VfIdG~~IGG  156 (179)
                      +++|..     +.| +|.+++-+|...|++|+.+.|+-.         +    ....++.+.....++|.+..||..+..
T Consensus         3 ~~Ly~~-----~~s-~~~~v~~~L~~~gi~ye~~~v~~~~~~~d~~~~e~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~e   76 (225)
T 3lsz_A            3 LKIYGV-----YRS-RASRPLWLLAELDLPFEHVPVIQANRVAHPHGPEAPLNTASAAYLAVNPLGQIPCLEEEGLILTE   76 (225)
T ss_dssp             CEEESC-----SSS-TTHHHHHHHHHHTCCCEEECCBCGGGSSCTTSTTCCSBTTCHHHHTTCTTCCSCEEEETTEEEES
T ss_pred             EEEEeC-----CCC-chHHHHHHHHHcCCCcEEEEeecccccccccccccccccCCHHHHhhCcCCCCCeEEECCEEEEc
Confidence            567877     589 999999999999999999888531         1    134566777788899999999999999


Q ss_pred             cHHHHHHHHc
Q 030327          157 CDITVEAYKN  166 (179)
Q Consensus       157 ~del~~l~~~  166 (179)
                      ...+.++..+
T Consensus        77 S~aI~~yL~~   86 (225)
T 3lsz_A           77 SLAITLHIAR   86 (225)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888776543

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=96.74  E-value=0.0047  Score=44.17  Aligned_cols=65  Identities=9%  Similarity=0.242  Sum_probs=40.7

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc----C--CCeEEEEcCC-----C-HHHH-----------------HHHHH
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL----N--APFETVNILE-----N-EMLR-----------------QGLKE  137 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~----g--v~y~~vdV~~-----d-~~~~-----------------~~L~~  137 (179)
                      ...++|+..+    +||++|.+....|.+.    +  +.+..++++.     + .+++                 ..+.+
T Consensus        29 gk~~lv~f~~----~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  104 (148)
T 2b5x_A           29 EKPTLIHFWS----ISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTD  104 (148)
T ss_dssp             TSCEEEEEEC----TTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHH
T ss_pred             CCEEEEEEEc----CCCHHHHHHhHHHHHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcceEECCchhHHH
Confidence            4445555544    6999999888777543    2  6677777653     1 1121                 13444


Q ss_pred             hcCCCCcceEee---CCEEEe
Q 030327          138 YSSWPTFPQLYI---EGEFFG  155 (179)
Q Consensus       138 ~sg~~tvP~VfI---dG~~IG  155 (179)
                      ..|...+|.+++   +|+.+.
T Consensus       105 ~~~v~~~P~~~lid~~G~i~~  125 (148)
T 2b5x_A          105 AFENEYVPAYYVFDKTGQLRH  125 (148)
T ss_dssp             HTCCCCSSEEEEECTTCBEEE
T ss_pred             HhCCCCCCEEEEECCCCcEEE
Confidence            457788999977   787665

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=96.72  E-value=0.015  Score=42.17  Aligned_cols=64  Identities=16%  Similarity=0.224  Sum_probs=39.3

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc-------CCCeEEEEcCCC-HH-HHH-----------------HHHHhcC
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNILEN-EM-LRQ-----------------GLKEYSS  140 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-------gv~y~~vdV~~d-~~-~~~-----------------~L~~~sg  140 (179)
                      ...++|+..+    +||++|.+....|.+.       ++.+..++++.+ ++ +++                 .+.+..|
T Consensus        28 gk~vll~f~~----~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  103 (154)
T 3kcm_A           28 GQVVIVNFWA----TWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYG  103 (154)
T ss_dssp             TSEEEEEEEC----TTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHHT
T ss_pred             CCEEEEEEEC----CCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHhC
Confidence            4455555554    6999999877777543       355666777765 22 222                 2444567


Q ss_pred             CCCcc-eEee--CCEEE
Q 030327          141 WPTFP-QLYI--EGEFF  154 (179)
Q Consensus       141 ~~tvP-~VfI--dG~~I  154 (179)
                      ...+| .++|  +|+.+
T Consensus       104 v~~~P~~~lid~~G~i~  120 (154)
T 3kcm_A          104 TTGVPETFVIDRHGVIL  120 (154)
T ss_dssp             CCSBCEEEEECTTSBEE
T ss_pred             CCCCCeEEEECCCCcEE
Confidence            88899 5555  56544

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=96.72  E-value=0.00087  Score=48.03  Aligned_cols=55  Identities=20%  Similarity=0.423  Sum_probs=36.7

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc--------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL--------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI  149 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~--------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI  149 (179)
                      ...++|+...    +||++|+++...|++.        ++.+..+|++.++.+    .+..+...+|.+++
T Consensus        25 ~~~vlv~f~a----~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~v~~~Pt~~~   87 (133)
T 2dj3_A           25 KKDVLIEFYA----PWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDIT----NDQYKVEGFPTIYF   87 (133)
T ss_dssp             TSEEEEEECC----TTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSCCC----CSSCCCSSSSEEEE
T ss_pred             CCcEEEEEEC----CCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCHHH----HhhcCCCcCCEEEE
Confidence            3445555554    7999999999888653        355666677655432    33457788999855

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=96.71  E-value=0.016  Score=42.74  Aligned_cols=67  Identities=10%  Similarity=0.151  Sum_probs=43.7

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHh-------cCCCeEEEEcCCCHHH-HHH------------------HHHhcC
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKS-------LNAPFETVNILENEML-RQG------------------LKEYSS  140 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~-------~gv~y~~vdV~~d~~~-~~~------------------L~~~sg  140 (179)
                      ...++|+...    +||++|......|.+       .|+.+..++++.+.+. ++.                  +.+..|
T Consensus        35 gk~vll~F~a----~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  110 (152)
T 2lrt_A           35 GKVVLIDFTV----YNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYN  110 (152)
T ss_dssp             GSEEEEEEEC----TTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHT
T ss_pred             CCEEEEEEEc----CCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcC
Confidence            3455665554    599999987666543       3567777788776543 221                  455567


Q ss_pred             CCCcceEee---CCEEEeec
Q 030327          141 WPTFPQLYI---EGEFFGGC  157 (179)
Q Consensus       141 ~~tvP~VfI---dG~~IGG~  157 (179)
                      ...+|.+|+   +|+.+.-+
T Consensus       111 v~~~P~~~lid~~G~i~~~~  130 (152)
T 2lrt_A          111 VTNLPSVFLVNRNNELSARG  130 (152)
T ss_dssp             CCSCSEEEEEETTTEEEEET
T ss_pred             cccCceEEEECCCCeEEEec
Confidence            778998765   78877543

>1dug_A Chimera of glutathione S-transferase-synthetic linker-C-terminal fibrinogen gamma...; gamma chain integrin fragment; HET: GSH; 1.80A {Schistosoma japonicum} SCOP: a.45.1.1 c.47.1.5 PDB: 1gne_A* 3qmz_T 1y6e_A 1m9a_A* 1gtb_A* 1gta_A* 1m99_A* 1m9b_A* 1ua5_A* 1u87_A* 1u88_A* 3crt_A* 3cru_A* 3d0z_A*

Probab=96.67  E-value=0.0054  Score=48.64  Aligned_cols=71  Identities=11%  Similarity=0.063  Sum_probs=51.8

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHH---hc-CCCCcceEeeCCEEEeecHHHHHHHH
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKE---YS-SWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~---~s-g~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      +.||...     .|++|.+++-+|...|++|+.+.++-.. ..+.+..   .. ...++|.+..||..|.....+.++..
T Consensus         2 ~~L~y~~-----~s~~~~~vr~~L~~~gi~ye~~~v~~~~-~~~~~~~~~~~~~P~g~vP~L~d~g~~l~eS~aI~~YL~   75 (234)
T 1dug_A            2 PILGYWK-----IKGLVQPTRLLLEYLEEKYEEHLYERDE-GDKWRNKKFELGLEFPNLPYYIDGDVKLTQSMAIIRYIA   75 (234)
T ss_dssp             CEEEEES-----SSGGGHHHHHHHHHHTCCCEEEEECTTC-HHHHHHHTTSSCCSSCCSSEEECSSCEEESHHHHHHHHH
T ss_pred             cEEEEcC-----CCCchHHHHHHHHHcCCCceEEEeCCCc-hhhHhhhccccCCCCCCCCEEEECCEEEecHHHHHHHHH
Confidence            4567763     8999999999999999999999886421 0112222   22 45689999988889998888777654


Q ss_pred             c
Q 030327          166 N  166 (179)
Q Consensus       166 ~  166 (179)
                      +
T Consensus        76 ~   76 (234)
T 1dug_A           76 D   76 (234)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=96.64  E-value=0.0013  Score=50.04  Aligned_cols=69  Identities=17%  Similarity=0.301  Sum_probs=44.1

Q ss_pred             HHHHhhhc-CCcEEEEEeeCCCCCCCchHHHHHHHHHh------cCCCeEEEEcCCCHHHHHHHHHhcCC--CCcceE-e
Q 030327           79 STLDKVVT-GNKVVLFMKGTKDFPQCGFSHTVVQILKS------LNAPFETVNILENEMLRQGLKEYSSW--PTFPQL-Y  148 (179)
Q Consensus        79 ~~l~~li~-~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~------~gv~y~~vdV~~d~~~~~~L~~~sg~--~tvP~V-f  148 (179)
                      +.++.... ...|+|+...    +||++|+.....|.+      .++.|..+|++.+++.   +....+.  ..+|.+ |
T Consensus        37 ~~~~~~~~~~k~vlv~F~a----~WC~~C~~~~p~l~~~~~~~~~~~~~~~v~~d~~~~~---~~~~~~~~~~~~Pt~~~  109 (164)
T 1sen_A           37 DGKKEAAASGLPLMVIIHK----SWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEP---KDEDFSPDGGYIPRILF  109 (164)
T ss_dssp             HHHHHHHHHTCCEEEEEEC----TTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSC---SCGGGCTTCSCSSEEEE
T ss_pred             HHHHHHHhcCCeEEEEEEC----CCCHHHHHHHHHHHHHHHHhhcCCeEEEEEecCCchH---HHHHhcccCCcCCeEEE
Confidence            44444433 4456666665    699999999999876      3578999999766441   1222333  568887 3


Q ss_pred             e--CCEEE
Q 030327          149 I--EGEFF  154 (179)
Q Consensus       149 I--dG~~I  154 (179)
                      +  +|+.+
T Consensus       110 ~d~~G~~~  117 (164)
T 1sen_A          110 LDPSGKVH  117 (164)
T ss_dssp             ECTTSCBC
T ss_pred             ECCCCCEE
Confidence            4  67654

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=96.62  E-value=0.013  Score=44.98  Aligned_cols=33  Identities=15%  Similarity=0.342  Sum_probs=23.3

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcC
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNIL  126 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~  126 (179)
                      .|+.|+.     +|||+|.+....|.++      ++.|..+++.
T Consensus        28 ~vv~f~d-----~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~~~~   66 (195)
T 3hd5_A           28 EVLEFFA-----YTCPHCAAIEPMVEDWAKTAPQDVVLKQVPIA   66 (195)
T ss_dssp             EEEEEEC-----TTCHHHHHHHHHHHHHHHTCCTTEEEEEEECC
T ss_pred             EEEEEEC-----CCCccHHHhhHHHHHHHHHCCCCeEEEEEecc
Confidence            3666666     6999999988777554      3556677764

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=96.62  E-value=0.009  Score=45.24  Aligned_cols=64  Identities=19%  Similarity=0.336  Sum_probs=42.8

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcC-CCeEEEEcCC-----C-------------HH--H----------------
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLN-APFETVNILE-----N-------------EM--L----------------  131 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~g-v~y~~vdV~~-----d-------------~~--~----------------  131 (179)
                      .|++|+.     ++||||+++...|++++ +.+.++++.-     +             +.  .                
T Consensus        17 ~vv~f~D-----~~Cp~C~~~~~~l~~l~~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~~a~~~~~~~g~~~~~~~~~   91 (147)
T 3gv1_A           17 KVAVFSD-----PDCPFCKRLEHEFEKMTDVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDWMRKGKFPVGGSIC   91 (147)
T ss_dssp             EEEEEEC-----TTCHHHHHHHHHHTTCCSEEEEEEECCCTTTCTTHHHHHHHHHTSSSHHHHHHHHHHHCCCCTTCCCC
T ss_pred             EEEEEEC-----CCChhHHHHHHHHhhcCceEEEEEEccccccChhHHHHHHHHHcCCCHHHHHHHHHhCCCCCCccHHH
Confidence            3666666     79999999999998875 4455555321     1             00  0                


Q ss_pred             ------HHHHHHhcCCCCcceEee-CCEEEeec
Q 030327          132 ------RQGLKEYSSWPTFPQLYI-EGEFFGGC  157 (179)
Q Consensus       132 ------~~~L~~~sg~~tvP~VfI-dG~~IGG~  157 (179)
                            ...+.+..|...+|.+++ ||+.+-|.
T Consensus        92 ~~~v~~~~~la~~~gI~gtPt~vi~nG~~i~G~  124 (147)
T 3gv1_A           92 DNPVAETTSLGEQFGFNGTPTLVFPNGRTQSGY  124 (147)
T ss_dssp             SCSHHHHHHHHHHTTCCSSCEEECTTSCEEESC
T ss_pred             HHHHHHHHHHHHHhCCCccCEEEEECCEEeeCC
Confidence                  112333447889999999 89988776

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.59  E-value=0.0053  Score=44.56  Aligned_cols=64  Identities=16%  Similarity=0.201  Sum_probs=37.3

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc-------CCCeEEEEcCCC--HHHH-----------------HHHHHhcC
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNILEN--EMLR-----------------QGLKEYSS  140 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-------gv~y~~vdV~~d--~~~~-----------------~~L~~~sg  140 (179)
                      ...++|+..+    +||++|.+....|.+.       ++.+..++++.+  +.++                 ..+.+..|
T Consensus        28 gk~~lv~f~~----~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  103 (153)
T 2l5o_A           28 GKVTLINFWF----PSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAFG  103 (153)
T ss_dssp             TCEEEEEEEC----TTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHHHT
T ss_pred             CCEEEEEEEC----CCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHHcC
Confidence            4455555554    6999999877766543       355555554322  1121                 12334457


Q ss_pred             CCCcceEee---CCEEE
Q 030327          141 WPTFPQLYI---EGEFF  154 (179)
Q Consensus       141 ~~tvP~VfI---dG~~I  154 (179)
                      ...+|.+++   +|+.+
T Consensus       104 i~~~P~~~lid~~G~i~  120 (153)
T 2l5o_A          104 TQVYPTSVLIGKKGEIL  120 (153)
T ss_dssp             CCSSSEEEEECSSSCCC
T ss_pred             CCccCeEEEECCCCcEE
Confidence            778999876   67653

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=96.55  E-value=0.008  Score=45.35  Aligned_cols=20  Identities=15%  Similarity=0.180  Sum_probs=17.0

Q ss_pred             cCCCCcceEeeCCEEEeecH
Q 030327          139 SSWPTFPQLYIEGEFFGGCD  158 (179)
Q Consensus       139 sg~~tvP~VfIdG~~IGG~d  158 (179)
                      .|...+|.++|||+.+.|..
T Consensus       145 ~gv~gtPt~vvng~~~~G~~  164 (175)
T 1z6m_A          145 AHIQFVPTIIIGEYIFDESV  164 (175)
T ss_dssp             HTCCSSCEEEETTEEECTTC
T ss_pred             cCCCCcCeEEECCEEccCCC
Confidence            37889999999999998754

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=96.52  E-value=0.0019  Score=47.71  Aligned_cols=60  Identities=15%  Similarity=0.244  Sum_probs=38.1

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHH-hcC-------CCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCEEEe
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILK-SLN-------APFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEFFG  155 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~-~~g-------v~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~~IG  155 (179)
                      .+|.|..     +||++|+++...+. ...       +++..+||+++..  +.+....+-..+|.+  |-||+.|+
T Consensus        21 ~LV~F~A-----~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~~~~--~~la~~~~V~g~PT~i~f~~G~ev~   90 (116)
T 3dml_A           21 RLLMFEQ-----PGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLP--PGLELARPVTFTPTFVLMAGDVESG   90 (116)
T ss_dssp             EEEEEEC-----TTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTSCCC--TTCBCSSCCCSSSEEEEEETTEEEE
T ss_pred             EEEEEEC-----CCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCCCCc--hhHHHHCCCCCCCEEEEEECCEEEe
Confidence            3455555     69999999877553 222       6788999987632  122223345566766  56998876

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=96.52  E-value=0.0022  Score=46.22  Aligned_cols=60  Identities=18%  Similarity=0.270  Sum_probs=42.5

Q ss_pred             CCcEEEEEeeCCCCCCCc--------------hHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcce
Q 030327           87 GNKVVLFMKGTKDFPQCG--------------FSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQ  146 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp--------------~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~  146 (179)
                      ...++|+..+    +||+              +|+.+...|++.      ++.+..+|++++++    +.+..|...+|.
T Consensus        21 ~k~vlv~F~a----~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~~~~~~vd~d~~~~----l~~~~~v~~~Pt   92 (123)
T 1oaz_A           21 DGAILVDFWA----EWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG----TAPKYGIRGIPT   92 (123)
T ss_dssp             SSEEEEEEEC----SSCSCBSSSTTSCCSCCCCCCTTHHHHTTC-------CEEEEEETTSCTT----TGGGGTCCBSSE
T ss_pred             CCeEEEEEEC----CCCccccccccccccCCCCcHHHHHHHHHHHHHhcCCeEEEEEECCCCHH----HHHHcCCCccCE
Confidence            3445555554    6999              999999988664      35677888887754    344557788999


Q ss_pred             Eee--CCEEE
Q 030327          147 LYI--EGEFF  154 (179)
Q Consensus       147 VfI--dG~~I  154 (179)
                      +++  +|+.+
T Consensus        93 ~~~~~~G~~~  102 (123)
T 1oaz_A           93 LLLFKNGEVA  102 (123)
T ss_dssp             EEEEESSSEE
T ss_pred             EEEEECCEEE
Confidence            866  88764

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=96.51  E-value=0.0079  Score=50.21  Aligned_cols=66  Identities=20%  Similarity=0.299  Sum_probs=42.4

Q ss_pred             HHhhh-cCC-cEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--C
Q 030327           81 LDKVV-TGN-KVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--E  150 (179)
Q Consensus        81 l~~li-~~~-~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--d  150 (179)
                      +++++ +.+ .|+|+...    +||++|++....|.+.      .+.+..+|++.+..  ..+....|...+|.+++  +
T Consensus        27 f~~~i~~~~~~vlV~F~A----~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~d~~~~--~~l~~~~~I~~~Pt~~~~~~  100 (298)
T 3ed3_A           27 FDKAIHNTNYTSLVEFYA----PWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKN--KALCAKYDVNGFPTLMVFRP  100 (298)
T ss_dssp             HHHHHTSSSSCEEEEEEC----TTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTSTTT--HHHHHHTTCCBSSEEEEEEC
T ss_pred             HHHHHHhCCCeEEEEEEC----CCCHHHHHHHHHHHHHHHHccCCcEEEEEEccCccC--HHHHHhCCCCccceEEEEEC
Confidence            55555 333 35555554    7999999998888654      25678888874321  33444557788998854  6


Q ss_pred             CE
Q 030327          151 GE  152 (179)
Q Consensus       151 G~  152 (179)
                      |+
T Consensus       101 g~  102 (298)
T 3ed3_A          101 PK  102 (298)
T ss_dssp             CC
T ss_pred             Cc
Confidence            64

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=96.51  E-value=0.012  Score=42.58  Aligned_cols=65  Identities=15%  Similarity=0.157  Sum_probs=41.5

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc-------CCCeEEEEcCCCHH-HHH-----------------HHHHhcCC
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNILENEM-LRQ-----------------GLKEYSSW  141 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-------gv~y~~vdV~~d~~-~~~-----------------~L~~~sg~  141 (179)
                      ...++|+..+    +||++|......|.++       ++.+..++++.+++ +++                 .+.+..|.
T Consensus        28 gk~vll~f~~----~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  103 (152)
T 3gl3_A           28 GSVVYLDFWA----SWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYGV  103 (152)
T ss_dssp             TSEEEEEEEC----TTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHHTTC
T ss_pred             CCEEEEEEEC----CcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHHcCC
Confidence            3455555554    6999999877766443       46777778876643 322                 34445678


Q ss_pred             CCcceE-ee--CCEEEe
Q 030327          142 PTFPQL-YI--EGEFFG  155 (179)
Q Consensus       142 ~tvP~V-fI--dG~~IG  155 (179)
                      ..+|.+ +|  +|+.+.
T Consensus       104 ~~~P~~~lid~~G~i~~  120 (152)
T 3gl3_A          104 KGMPTSFLIDRNGKVLL  120 (152)
T ss_dssp             CSSSEEEEECTTSBEEE
T ss_pred             CCCCeEEEECCCCCEEE
Confidence            889995 55  565543

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=96.49  E-value=0.017  Score=41.97  Aligned_cols=67  Identities=6%  Similarity=0.059  Sum_probs=42.9

Q ss_pred             CCcEEEEEeeCCCCCCCch--HHHHHHHHHh----c----CCCeEEEEcCCCH-HHHH--------------------HH
Q 030327           87 GNKVVLFMKGTKDFPQCGF--SHTVVQILKS----L----NAPFETVNILENE-MLRQ--------------------GL  135 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~--C~~ak~lL~~----~----gv~y~~vdV~~d~-~~~~--------------------~L  135 (179)
                      ...++|+...    .||++  |......|.+    +    ++.+..++++.++ .+++                    .+
T Consensus        33 gk~vll~F~a----~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  108 (150)
T 3fw2_A           33 QKSLLINFWA----SWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEV  108 (150)
T ss_dssp             TSEEEEEEEC----TTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHH
T ss_pred             CCEEEEEEEe----CCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHH
Confidence            4456666655    59999  9987766633    2    3556677777664 3333                    34


Q ss_pred             HHhcCCCCcceEee---CCEEEeec
Q 030327          136 KEYSSWPTFPQLYI---EGEFFGGC  157 (179)
Q Consensus       136 ~~~sg~~tvP~VfI---dG~~IGG~  157 (179)
                      .+..|...+|.+|+   +|+.+.-.
T Consensus       109 ~~~~~v~~~P~~~lid~~G~i~~~~  133 (150)
T 3fw2_A          109 AKQYSIYKIPANILLSSDGKILAKN  133 (150)
T ss_dssp             HHHTTCCSSSEEEEECTTSBEEEES
T ss_pred             HHHcCCCccCeEEEECCCCEEEEcc
Confidence            44457778898754   68777654

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=96.45  E-value=0.0071  Score=48.91  Aligned_cols=31  Identities=23%  Similarity=0.396  Sum_probs=22.0

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHH----hcCCCeEEEEc
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILK----SLNAPFETVNI  125 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~----~~gv~y~~vdV  125 (179)
                      |++|+.     ++||||++....|.    +-+|.+.++++
T Consensus       101 v~~F~D-----~~Cp~C~~~~~~l~~~~~~g~v~v~~~~~  135 (241)
T 1v58_A          101 VYVFAD-----PFCPYCKQFWQQARPWVDSGKVQLRTLLV  135 (241)
T ss_dssp             EEEEEC-----TTCHHHHHHHHHHHHHHHTTSEEEEEEEC
T ss_pred             EEEEEC-----CCChhHHHHHHHHHHHHhCCcEEEEEEEC
Confidence            666666     79999999866554    33477777765

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=96.44  E-value=0.0082  Score=43.81  Aligned_cols=44  Identities=5%  Similarity=0.079  Sum_probs=29.1

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc-------CCCeEEEEcCCCHHHHHH
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNILENEMLRQG  134 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-------gv~y~~vdV~~d~~~~~~  134 (179)
                      ...|+|+...    +||++|......|.+.       ++.+..++++..+++++.
T Consensus        24 gk~vlv~F~a----~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~   74 (151)
T 3raz_A           24 APVRIVNLWA----TWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNF   74 (151)
T ss_dssp             SSEEEEEEEC----TTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHH
T ss_pred             CCEEEEEEEc----CcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHHHH
Confidence            4456665555    6999999888877653       455667777655555443

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=96.41  E-value=0.0084  Score=46.88  Aligned_cols=59  Identities=15%  Similarity=0.294  Sum_probs=40.0

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhc---------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEe--eCCEEEe
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSL---------NAPFETVNILENEMLRQGLKEYSSWPTFPQLY--IEGEFFG  155 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~---------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~Vf--IdG~~IG  155 (179)
                      .++|+...    +||++|+.....|.+.         ++.+..+|+++++++.    +..|...+|.++  -+|+.+.
T Consensus       149 ~~~v~f~a----~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~----~~~~v~~~Pt~~~~~~g~~~~  218 (241)
T 3idv_A          149 IILVEFYA----PWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLA----KRFDVSGYPTLKIFRKGRPYD  218 (241)
T ss_dssp             EEEEEEEC----TTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHH----HHTTCCSSSEEEEEETTEEEE
T ss_pred             eEEEEEEC----CCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCCCHHHH----HHcCCcccCEEEEEECCeEEE
Confidence            44554443    6999998766555332         2789999998887643    344677888874  4887764

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=95.41  E-value=0.00053  Score=49.38  Aligned_cols=36  Identities=11%  Similarity=0.112  Sum_probs=23.0

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhc---------CCCeEEEEcCCC
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSL---------NAPFETVNILEN  128 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~---------gv~y~~vdV~~d  128 (179)
                      .++|+...    +||++|......|.+.         ++.+..++++++
T Consensus        28 ~vll~F~a----~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~   72 (143)
T 2lus_A           28 IIGFYFSA----HWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRS   72 (143)
Confidence            55555554    5999999888777553         344555555543

>4gf0_A Glutathione S-transferase; GST, enzyme function initiative, EFI, structural genomics; HET: GSH; 1.75A {Sulfitobacter}

Probab=96.37  E-value=0.011  Score=45.94  Aligned_cols=70  Identities=14%  Similarity=0.243  Sum_probs=53.6

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcC--CCHHHHHHHHHhcCCCCcceEeeC-CEEEeecHHHHHHHH
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNIL--ENEMLRQGLKEYSSWPTFPQLYIE-GEFFGGCDITVEAYK  165 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~--~d~~~~~~L~~~sg~~tvP~VfId-G~~IGG~del~~l~~  165 (179)
                      +.+|..     | .+.+.+++=+|.+.|++|+.+.|+  ..+....++.+++-..++|++.+| |..|.....+.++.+
T Consensus         4 ~kLY~~-----p-~s~s~~vr~~L~e~gl~ye~~~v~~~~~~~~~~~~l~~nP~g~vP~L~~d~g~~l~ES~aI~~YL~   76 (215)
T 4gf0_A            4 LTLYFT-----P-GTISVAVAIAIEEAALPYQPVRVDFATAEQTKPDYLAINPKGRVPALRLEDDTILTETGALLDYVA   76 (215)
T ss_dssp             EEEEEC-----T-TSTHHHHHHHHHHTTCCEEEEECCGGGTGGGSHHHHTTCTTCCSCEEECTTSCEEECHHHHHHHHH
T ss_pred             EEEEeC-----C-CCcHHHHHHHHHHhCCCCEEEEECCCCCccCCHHHHHhCCCCCcceEEecCCcEEechHHHHHHHH
Confidence            668865     3 356889999999999999998875  334444567777778899999886 778888887777654

>2pvq_A Glutathione S-transferase; xenobiotics detoxification, H-site; HET: GSH; 1.80A {Ochrobactrum anthropi} PDB: 2nto_A*

Probab=96.29  E-value=0.0029  Score=48.51  Aligned_cols=70  Identities=14%  Similarity=0.083  Sum_probs=53.2

Q ss_pred             EEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHH---HHHHHHHhcCCCCcceEe-eCCEEEeecHHHHHHHHc
Q 030327           91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEM---LRQGLKEYSSWPTFPQLY-IEGEFFGGCDITVEAYKN  166 (179)
Q Consensus        91 vlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~---~~~~L~~~sg~~tvP~Vf-IdG~~IGG~del~~l~~~  166 (179)
                      .+|..     +.|+ |.+++-+|...|++|+.+.++-...   ...++++.+...++|.+. -||..+.+...+.++..+
T Consensus         2 ~Ly~~-----~~s~-~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~~P~g~vP~L~~~~g~~l~eS~aI~~yL~~   75 (201)
T 2pvq_A            2 KLYYK-----VGAA-SLAPHIILSEAGLPYELEAVDLKAKKTADGGDYFAVNPRGAVPALEVKPGTVITQNAAILQYIGD   75 (201)
T ss_dssp             EEEEC-----TTST-THHHHHHHHHHTCCCEEEECBTTTTBCTTSCBGGGTCTTCCSCEEEEETTEEEESHHHHHHHHHH
T ss_pred             eeeeC-----CCcc-HHHHHHHHHhcCCCceEEEecccccCCCCCHHHHhhCcCCCCCEEEeCCCCEEehHHHHHHHHHH
Confidence            56776     4786 9999999999999999998863211   123455666788999998 588999998888876554

>3uar_A Glutathione S-transferase; GSH binding site; HET: GSH; 2.60A {Methylococcus capsulatus} PDB: 3uap_A*

Probab=96.28  E-value=0.0044  Score=48.88  Aligned_cols=71  Identities=14%  Similarity=0.177  Sum_probs=53.5

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCH---HHHHHHHHhcCCCCcceEee-CCEEEeecHHHHHHHH
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENE---MLRQGLKEYSSWPTFPQLYI-EGEFFGGCDITVEAYK  165 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~---~~~~~L~~~sg~~tvP~VfI-dG~~IGG~del~~l~~  165 (179)
                      +.||..     +.+ +|.+++-+|...|++|+.+.|+-..   ...+++.+.....++|.+.. ||..|.+...+.++.+
T Consensus         3 ~~Ly~~-----~~s-~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~dg~~l~eS~aI~~YL~   76 (227)
T 3uar_A            3 MKLYYF-----PGA-CSLAPHIVLREAGLDFELENVDLGTKKTGSGADFLQVNPKGYVPALQLDDGQVLTEDQVILQYLA   76 (227)
T ss_dssp             EEEEEC-----TTS-TTHHHHHHHHHHTCCEEEEEEETTTTEETTCCBHHHHCTTCCSCEEECTTCCEEECHHHHHHHHH
T ss_pred             EEEecC-----CCc-chHHHHHHHHHcCCCceEEEeccCcCcccCCHHHHHhCCCCCCCeEEECCCCEEecHHHHHHHHH
Confidence            678877     344 5999999999999999988775322   12245666777889999998 6778988888877654


Q ss_pred             c
Q 030327          166 N  166 (179)
Q Consensus       166 ~  166 (179)
                      +
T Consensus        77 ~   77 (227)
T 3uar_A           77 D   77 (227)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=96.23  E-value=0.0045  Score=45.46  Aligned_cols=25  Identities=4%  Similarity=0.090  Sum_probs=17.6

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHh
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKS  115 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~  115 (179)
                      ...++|+...    +||++|+.....|.+
T Consensus        38 gk~vlv~F~a----~~C~~C~~~~~~l~~   62 (164)
T 2h30_A           38 DKPTLIKFWA----SWCPLCLSELGQAEK   62 (164)
T ss_dssp             TSCEEEEECC----TTCHHHHHHHHHHHH
T ss_pred             CCEEEEEEEC----CCCHHHHHHHHHHHH
Confidence            3445555555    699999998877754

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=96.19  E-value=0.011  Score=47.08  Aligned_cols=55  Identities=13%  Similarity=0.190  Sum_probs=35.7

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhc---------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEe
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSL---------NAPFETVNILENEMLRQGLKEYSSWPTFPQLY  148 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~---------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~Vf  148 (179)
                      ..++|+...    +||++|++....|++.         ++.+..+|++.+.  ...+.+..|...+|.++
T Consensus        31 ~~vlv~F~a----~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~--~~~l~~~~~v~~~Pt~~   94 (244)
T 3q6o_A           31 SAWAVEFFA----SWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEET--NSAVCRDFNIPGFPTVR   94 (244)
T ss_dssp             SEEEEEEEC----TTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTT--THHHHHHTTCCSSSEEE
T ss_pred             CeEEEEEEC----CcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchh--hHHHHHHcCCCccCEEE
Confidence            445555554    6999999998887553         3567777874321  13344556778899873

>1n2a_A Glutathione S-transferase; HET: GTS; 1.90A {Escherichia coli} SCOP: a.45.1.1 c.47.1.5 PDB: 1a0f_A*

Probab=96.15  E-value=0.0027  Score=48.68  Aligned_cols=70  Identities=16%  Similarity=0.150  Sum_probs=52.1

Q ss_pred             EEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCH---HHHHHHHHhcCCCCcceEee-CCEEEeecHHHHHHHHc
Q 030327           91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENE---MLRQGLKEYSSWPTFPQLYI-EGEFFGGCDITVEAYKN  166 (179)
Q Consensus        91 vlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~---~~~~~L~~~sg~~tvP~VfI-dG~~IGG~del~~l~~~  166 (179)
                      .+|..     +.|+ |.+++-+|...|++|+.+.++-..   ....++.+.+...++|.+.+ ||..+.+...+.++..+
T Consensus         2 ~Ly~~-----~~s~-~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~   75 (201)
T 1n2a_A            2 KLFYK-----PGAC-SLASHITLRESGKDFTLVSVDLMKKRLENGDDYFAVNPKGQVPALLLDDGTLLTEGVAIMQYLAD   75 (201)
T ss_dssp             EEEEC-----TTST-THHHHHHHHHTTCCCEEEEEETTTTEETTCCBGGGTCTTCCSCEEECTTSCEEESHHHHHHHHHH
T ss_pred             eeecC-----CCcc-hHHHHHHHHHcCCCCeeEEEeCCCccccCCHHHHhhCcCCCCCeEEecCCcEEecHHHHHHHHHH
Confidence            46766     4774 999999999999999888775321   12234556677889999986 78889888888776543

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=96.13  E-value=0.017  Score=50.83  Aligned_cols=64  Identities=19%  Similarity=0.367  Sum_probs=43.6

Q ss_pred             HHhhhcCCc-EEEEEeeCCCCCCCchHHHHHHHHHhc-------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeC
Q 030327           81 LDKVVTGNK-VVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIE  150 (179)
Q Consensus        81 l~~li~~~~-Vvlysk~t~~~p~Cp~C~~ak~lL~~~-------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fId  150 (179)
                      ++++++.++ ++|+...    |||++|+++...+.+.       ++.+..+|++.+.+    +.+..|...+|.+  |.+
T Consensus        24 f~~~~~~~~~~lv~F~a----~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~~~~~----l~~~~~v~~~Pt~~~~~~   95 (504)
T 2b5e_A           24 FNEYIQSHDLVLAEFFA----PWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQD----LCMEHNIPGFPSLKIFKN   95 (504)
T ss_dssp             HHHHHTTCSEEEEEEEC----TTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHH----HHHHTTCCSSSEEEEEET
T ss_pred             HHHHHhcCCeEEEEEEC----CCCHHHHHhHHHHHHHHHHhccCCeEEEEEECCCCHH----HHHhcCCCcCCEEEEEeC
Confidence            344444443 4444443    7999999999888653       47788899888755    4445577788887  447


Q ss_pred             CE
Q 030327          151 GE  152 (179)
Q Consensus       151 G~  152 (179)
                      |+
T Consensus        96 g~   97 (504)
T 2b5e_A           96 SD   97 (504)
T ss_dssp             TC
T ss_pred             Cc
Confidence            76

>3h1n_A Probable glutathione S-transferase; APC84167, bordetella bronchisepti structural genomics, PSI-2, protein structure initiative; 1.83A {Bordetella bronchiseptica RB50}

Probab=96.12  E-value=0.0067  Score=48.71  Aligned_cols=73  Identities=12%  Similarity=0.064  Sum_probs=56.0

Q ss_pred             CcEEEEEeeCCCCCC-CchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHH-H--HhcCCCCcceEeeCCEEEeecHHHHHH
Q 030327           88 NKVVLFMKGTKDFPQ-CGFSHTVVQILKSLNAPFETVNILENEMLRQGL-K--EYSSWPTFPQLYIEGEFFGGCDITVEA  163 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~-Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L-~--~~sg~~tvP~VfIdG~~IGG~del~~l  163 (179)
                      ..+.||..     ++ ++.|.+++-+|.+.|++|+.+.|+.+.....++ +  ...-. ++|.+..||..+.....+.++
T Consensus        20 m~~~L~y~-----~g~~~~a~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~k~~nP~-kVPvL~d~g~~l~ES~AI~~Y   93 (252)
T 3h1n_A           20 MAYDLWYW-----DGIPGRGEFVRLALEAGKIPYRDRAREPGEDMLDDMRRRRDTPPF-APPYLVADGMTIAQTANILLF   93 (252)
T ss_dssp             GCEEEECC-----SSSCTTHHHHHHHHHHHTCCEEEGGGSTTCCHHHHHTSCCSSCCS-SSCEEEETTEEEESHHHHHHH
T ss_pred             CceEEEeC-----CCCCcchHHHHHHHHhCCCCceEEeecCchhhHHHHhhccCCCCC-CCCEEEECCEEeecHHHHHHH
Confidence            34888887     44 999999999999999999999887432222333 3  45567 999999999999988887776


Q ss_pred             HHc
Q 030327          164 YKN  166 (179)
Q Consensus       164 ~~~  166 (179)
                      ..+
T Consensus        94 L~~   96 (252)
T 3h1n_A           94 LGV   96 (252)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=96.11  E-value=0.035  Score=42.18  Aligned_cols=25  Identities=16%  Similarity=0.304  Sum_probs=18.4

Q ss_pred             cCCCCcceEeeCCEEE-eec--HHHHHH
Q 030327          139 SSWPTFPQLYIEGEFF-GGC--DITVEA  163 (179)
Q Consensus       139 sg~~tvP~VfIdG~~I-GG~--del~~l  163 (179)
                      .|...+|.++|||+.+ +|.  +++.++
T Consensus       151 ~gv~gtPt~ving~~~~~g~~~~~l~~~  178 (193)
T 2rem_A          151 VRPVGTPTIVVNGRYMVTGHDFEDTLRI  178 (193)
T ss_dssp             HCCSSSSEEEETTTEEECCSSHHHHHHH
T ss_pred             hCCCCCCeEEECCEEEecCCCHHHHHHH
Confidence            3888999999999876 765  344443

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=96.11  E-value=0.0046  Score=46.34  Aligned_cols=49  Identities=10%  Similarity=0.179  Sum_probs=28.7

Q ss_pred             CCchHHHHHHHHHhc-----CCC--eEEEEcCCCHHHHHHHHHhcCCCCcceEee--CCEEE
Q 030327          102 QCGFSHTVVQILKSL-----NAP--FETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEFF  154 (179)
Q Consensus       102 ~Cp~C~~ak~lL~~~-----gv~--y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG~~I  154 (179)
                      ||+.|+.+...|+++     ++.  +..+|++++++    +....|-..+|.+++  ||+.+
T Consensus        47 ~C~~C~~l~P~l~~la~~~~~v~~~~~~Vd~d~~~~----la~~~~V~~iPT~~~fk~G~~v  104 (142)
T 2es7_A           47 RTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEA----IGDRFNVRRFPATLVFTDGKLR  104 (142)
T ss_dssp             C----CCHHHHHHHHHHTCTTSCCEEEEECHHHHHH----HHHTTTCCSSSEEEEESCC---
T ss_pred             CCccHHHHHHHHHHHHHHhcccceeEEEEECCCCHH----HHHhcCCCcCCeEEEEeCCEEE
Confidence            499999988888653     466  66777755443    445567888998744  88755

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=96.07  E-value=0.028  Score=45.35  Aligned_cols=75  Identities=12%  Similarity=0.207  Sum_probs=52.2

Q ss_pred             cCCHHHHHHHHhhhcC--Cc-EEEEEeeCCCCCC--CchHHHHHHHHHhcC-----------CCeEEEEcCCCHHHHHHH
Q 030327           72 ALTPELKSTLDKVVTG--NK-VVLFMKGTKDFPQ--CGFSHTVVQILKSLN-----------APFETVNILENEMLRQGL  135 (179)
Q Consensus        72 ~~~~~~~~~l~~li~~--~~-Vvlysk~t~~~p~--Cp~C~~ak~lL~~~g-----------v~y~~vdV~~d~~~~~~L  135 (179)
                      +.+.+.++.+++++..  .+ ++.|..     +|  |++|+.++.+|++..           +.+..+|.++++++    
T Consensus         8 ~~~~~~~~ql~~~~~~~~~pv~v~~~~-----~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~~~~~----   78 (243)
T 2hls_A            8 DLSEDFRRELRETLAEMVNPVEVHVFL-----SKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDSDK----   78 (243)
T ss_dssp             CCCHHHHHHHHHHHTTCCSCEEEEEEE-----CSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTTTHHH----
T ss_pred             hCCHHHHHHHHHHHHhCCCCEEEEEEe-----CCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCcCHHH----
Confidence            4677888888888866  34 445554     47  999999999887631           66778888777654    


Q ss_pred             HHhcCCCCcceEee-CC--EEEe
Q 030327          136 KEYSSWPTFPQLYI-EG--EFFG  155 (179)
Q Consensus       136 ~~~sg~~tvP~VfI-dG--~~IG  155 (179)
                      .+..|-..+|.+.+ +|  ++.|
T Consensus        79 ~~~~gv~~~Pt~~i~~g~~~~~G  101 (243)
T 2hls_A           79 FSEFKVERVPTVAFLGGEVRWTG  101 (243)
T ss_dssp             HHHTTCCSSSEEEETTTTEEEES
T ss_pred             HHhcCCCcCCEEEEECCceeEcC
Confidence            33456668998855 44  4445

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=96.06  E-value=0.013  Score=50.05  Aligned_cols=59  Identities=15%  Similarity=0.313  Sum_probs=40.7

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhc------------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CCEE
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSL------------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEF  153 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG~~  153 (179)
                      ..++|+...    +||++|+++...+.+.            ++.+..+|++.+.++    .+..|...+|.+++  +|+.
T Consensus        23 ~~vlV~F~a----~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~~l----~~~~~v~~~Pt~~~f~~G~~   94 (382)
T 2r2j_A           23 DVALVNFYA----DWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDI----AQRYRISKYPTLKLFRNGMM   94 (382)
T ss_dssp             SEEEEEEEC----TTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTCHHH----HHHTTCCEESEEEEEETTEE
T ss_pred             CeEEEEEEC----CCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCccHHH----HHhcCCCcCCEEEEEeCCcE
Confidence            345554443    7999999998877542            266788888877554    44457778888844  8875


Q ss_pred             E
Q 030327          154 F  154 (179)
Q Consensus       154 I  154 (179)
                      +
T Consensus        95 ~   95 (382)
T 2r2j_A           95 M   95 (382)
T ss_dssp             E
T ss_pred             e
Confidence            5

>1pmt_A PMGST, GST B1-1, glutathione transferase; glutathione-conjugating, A putative oxidoreduct; HET: GSH; 2.50A {Proteus mirabilis} SCOP: a.45.1.1 c.47.1.5 PDB: 2pmt_A*

Probab=95.96  E-value=0.0044  Score=47.55  Aligned_cols=70  Identities=14%  Similarity=0.120  Sum_probs=52.3

Q ss_pred             EEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCH--HH-HHHHHHhcCCCCcceEe-eCCEEEeecHHHHHHHHc
Q 030327           91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENE--ML-RQGLKEYSSWPTFPQLY-IEGEFFGGCDITVEAYKN  166 (179)
Q Consensus        91 vlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~--~~-~~~L~~~sg~~tvP~Vf-IdG~~IGG~del~~l~~~  166 (179)
                      .+|..     +.|+ |.+++-+|...|++|+.+.|+-..  .. ..++.+.+...++|.+. .||..+.+...+.++..+
T Consensus         2 ~Ly~~-----~~s~-~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~   75 (203)
T 1pmt_A            2 KLYYT-----PGSC-SLSPHIVLRETGLDFSIERIDLRTKKTESGKDFLAINPKGQVPVLQLDNGDILTEGVAIVQYLAD   75 (203)
T ss_dssp             EEEEC-----TTST-THHHHHHHHHTTCCCEEEEEETTTTEETTSCBGGGTCTTCCSCEEECTTSCEEESHHHHHHHHHT
T ss_pred             eeecc-----CCcc-hHHHHHHHHHcCCCceEEEeccccccccCCHHHHhcCCCCCCCeEEecCCcEEeeHHHHHHHHHH
Confidence            56766     4774 999999999999999888775321  11 23455666778999998 678889988888887654

>1f2e_A Glutathione S-transferase; GST complexed with glutathione, thioredoxin superfamily fold transferase; HET: GSH; 2.30A {Sphingomonas paucimobilis} SCOP: a.45.1.1 c.47.1.5

Probab=95.95  E-value=0.0046  Score=47.36  Aligned_cols=70  Identities=19%  Similarity=0.153  Sum_probs=51.6

Q ss_pred             EEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC-H-HH-HHHHHHhcCCCCcceEe-eCCEEEeecHHHHHHHHc
Q 030327           91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN-E-ML-RQGLKEYSSWPTFPQLY-IEGEFFGGCDITVEAYKN  166 (179)
Q Consensus        91 vlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d-~-~~-~~~L~~~sg~~tvP~Vf-IdG~~IGG~del~~l~~~  166 (179)
                      .+|..     + +++|.+++-+|...|++|+.+.++-. . .. ..++.+.+...++|.+. .||..+.+...+.++..+
T Consensus         2 ~Ly~~-----~-~~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~~P~g~vP~L~~~~g~~l~eS~aI~~yL~~   75 (201)
T 1f2e_A            2 KLFIS-----P-GACSLAPHIALRETGADFEAVKVDLAVRKTEAGEDFLTVNPSGKVPALTLDSGETLTENPAILLYIAD   75 (201)
T ss_dssp             EEEEC-----T-TSTTHHHHHHHHHHTCCCEEEEEETTTTEETTSCBHHHHCTTCCSCEEECTTSCEEESHHHHHHHHHH
T ss_pred             eeeec-----C-CccHHHHHHHHHHcCCCceEEEeecCCCCCCCChHHHccCcCCCCceEEecCCcEeeHHHHHHHHHHH
Confidence            56775     2 57899999999999999998877532 1 11 13455667788999998 578889888887776543

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=95.94  E-value=0.03  Score=48.83  Aligned_cols=67  Identities=16%  Similarity=0.343  Sum_probs=46.1

Q ss_pred             HHhhhcCC----cEEEEEeeCCCCCCCchHHHHHHHHHhc-----C-CCeEEEEcCCCHHHHHHHHHhcCCCCcceE--e
Q 030327           81 LDKVVTGN----KVVLFMKGTKDFPQCGFSHTVVQILKSL-----N-APFETVNILENEMLRQGLKEYSSWPTFPQL--Y  148 (179)
Q Consensus        81 l~~li~~~----~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----g-v~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--f  148 (179)
                      +++++..+    .++|+...    +||++|+++...|.+.     + +.+..+|++.+.++.    +..|...+|.+  |
T Consensus        11 f~~~i~~~~~~~~~lv~F~a----~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~l~----~~~~v~~~Ptl~~~   82 (481)
T 3f8u_A           11 FESRISDTGSAGLMLVEFFA----PWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTANTNTC----NKYGVSGYPTLKIF   82 (481)
T ss_dssp             HHHHTTCCSSSSEEEEEEEC----TTCHHHHHHHHHHHHHHHHTTTTCCEEEEETTTCHHHH----HHTTCCEESEEEEE
T ss_pred             HHHHHHhCCCCCeEEEEEEC----CCCHHHHHhHHHHHHHHHHhcCceEEEEEECCCCHHHH----HhcCCCCCCEEEEE
Confidence            44555444    45555544    7999999999888554     2 789999998877654    44577788877  5


Q ss_pred             eCCEEEe
Q 030327          149 IEGEFFG  155 (179)
Q Consensus       149 IdG~~IG  155 (179)
                      .+|+.+.
T Consensus        83 ~~g~~~~   89 (481)
T 3f8u_A           83 RDGEEAG   89 (481)
T ss_dssp             ETTEEEE
T ss_pred             eCCceee
Confidence            5886553

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=95.89  E-value=0.016  Score=44.24  Aligned_cols=68  Identities=9%  Similarity=0.125  Sum_probs=40.7

Q ss_pred             HHHHHHHhhhc-CCcEEEEEeeCCCCCCCchHHHHH----------HHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCc
Q 030327           76 ELKSTLDKVVT-GNKVVLFMKGTKDFPQCGFSHTVV----------QILKSLNAPFETVNILENEMLRQGLKEYSSWPTF  144 (179)
Q Consensus        76 ~~~~~l~~li~-~~~Vvlysk~t~~~p~Cp~C~~ak----------~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tv  144 (179)
                      +.++.+.+..+ ...|+|+..+    .||.+|+++.          ++|++   .|..+.++.+......+.+.++...+
T Consensus        30 ~~~~Al~~Ak~~~K~vlvd~~a----~wC~~C~~me~~vf~d~~V~~~l~~---~fv~v~~d~~~~~~~~l~~~y~v~~~  102 (153)
T 2dlx_A           30 SFETAKECGQMQNKWLMINIQN----VQDFACQCLNRDVWSNEAVKNIIRE---HFIFWQVYHDSEEGQRYIQFYKLGDF  102 (153)
T ss_dssp             CHHHHHHHHHHHTCEEEEEEEC----SCTTTHHHHHHHTTTCHHHHHHHHH---TEEEEEEESSSHHHHHHHHHHTCCSS
T ss_pred             CHHHHHHHHHHcCCeEEEEEEC----CCCHhHHHHHHHhcCCHHHHHHHHc---CeEEEEEecCCHhHHHHHHHcCCCCC
Confidence            45555655544 4457777776    6999998763          34433   44444443332333455566688889


Q ss_pred             ceE-eeC
Q 030327          145 PQL-YIE  150 (179)
Q Consensus       145 P~V-fId  150 (179)
                      |.+ |+|
T Consensus       103 P~~~fld  109 (153)
T 2dlx_A          103 PYVSILD  109 (153)
T ss_dssp             SEEEEEC
T ss_pred             CEEEEEe
Confidence            988 554

>2dsa_A Glutathione S-transferase; HET: GSH HPX; 2.10A {Burkholderia xenovorans} PDB: 2gdr_A*

Probab=95.80  E-value=0.0041  Score=47.72  Aligned_cols=69  Identities=19%  Similarity=0.148  Sum_probs=51.0

Q ss_pred             EEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCH---HHHHHHHHhcCCCCcceEee-CCEEEeecHHHHHHHH
Q 030327           91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENE---MLRQGLKEYSSWPTFPQLYI-EGEFFGGCDITVEAYK  165 (179)
Q Consensus        91 vlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~---~~~~~L~~~sg~~tvP~VfI-dG~~IGG~del~~l~~  165 (179)
                      .+|..     +.|+ |.+++-+|...|++|+.+.++-..   ....++.+.+...++|.+.+ ||..+.+...+.++..
T Consensus         2 ~Ly~~-----~~s~-~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~~P~g~vP~L~~~~g~~l~eS~aI~~yL~   74 (203)
T 2dsa_A            2 KLYYS-----PGAC-SLSPHIALREAGLNFELVQVDLASKKTASGQDYLEVNPAGYVPCLQLDDGRTLTEGPAIVQYVA   74 (203)
T ss_dssp             EEEEC-----TTST-THHHHHHHHHHTCCCEEEEEETTTTEETTCCBGGGTCTTCCSCEEECTTSCEEESHHHHHHHHH
T ss_pred             eeeec-----CCcc-hHHHHHHHHHcCCCCeEEEEeCCCCcccCCHHHHHhCCCCCCCEEEecCCcEEecHHHHHHHHH
Confidence            56766     4674 999999999999999988775321   12234556667789999986 7888888888777654

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=95.61  E-value=0.056  Score=39.23  Aligned_cols=35  Identities=14%  Similarity=0.062  Sum_probs=22.4

Q ss_pred             CCcEEEEEeeCCCCCCCchHHH-HHHHHHhc-------CCCeEEEEc
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHT-VVQILKSL-------NAPFETVNI  125 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~-ak~lL~~~-------gv~y~~vdV  125 (179)
                      ...|+|+...    +||++|.. +...|.++       ++.+..+++
T Consensus        30 gk~vlv~F~a----~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~   72 (160)
T 3lor_A           30 GKVVVVEVFQ----MLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHS   72 (160)
T ss_dssp             TSEEEEEEEC----TTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEEC
T ss_pred             CCEEEEEEEc----CCCcchhhhhhHHHHHHHHHhCcCCcEEEEEec
Confidence            4556666555    59999998 56666432       355556665

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=95.46  E-value=0.048  Score=38.53  Aligned_cols=64  Identities=22%  Similarity=0.351  Sum_probs=38.1

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc-------CCCeEEEEcCC---CHH-HHH-----------------HHHHh
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNILE---NEM-LRQ-----------------GLKEY  138 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-------gv~y~~vdV~~---d~~-~~~-----------------~L~~~  138 (179)
                      ...++|+..+    +||++|......|.++       ++.+..++++.   +++ +++                 .+.+.
T Consensus        34 gk~~ll~f~~----~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  109 (145)
T 3erw_A           34 GQKTILHFWT----SWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKE  109 (145)
T ss_dssp             TSEEEEEEEC----SSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHH
T ss_pred             CCEEEEEEEC----CCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHh
Confidence            3445555544    6999999988777553       45566666653   222 222                 33444


Q ss_pred             cCCCCcceEee---CCEEE
Q 030327          139 SSWPTFPQLYI---EGEFF  154 (179)
Q Consensus       139 sg~~tvP~VfI---dG~~I  154 (179)
                      .|...+|.+++   +|+.+
T Consensus       110 ~~v~~~P~~~lid~~G~i~  128 (145)
T 3erw_A          110 YHIITIPTSFLLNEKGEIE  128 (145)
T ss_dssp             TTCCEESEEEEECTTCCEE
T ss_pred             cCcCccCeEEEEcCCCcEE
Confidence            56778898654   56544

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=95.38  E-value=0.09  Score=40.01  Aligned_cols=19  Identities=11%  Similarity=0.128  Sum_probs=15.6

Q ss_pred             cCCCCcceEeeCCEE-Eeec
Q 030327          139 SSWPTFPQLYIEGEF-FGGC  157 (179)
Q Consensus       139 sg~~tvP~VfIdG~~-IGG~  157 (179)
                      .|...+|.++|||+. +.|.
T Consensus       146 ~gv~gtPt~ving~~~~~g~  165 (195)
T 2znm_A          146 YRIDSTPTVIVGGKYRVIFN  165 (195)
T ss_dssp             TTCCSSSEEEETTTEEECCC
T ss_pred             cCCCCCCeEEECCEEEEcCC
Confidence            478899999999996 6663

>1b8x_A Protein (AML-1B); nuclear matrix targeting signal protein, signal protein; 2.70A {Escherichia coli} SCOP: a.45.1.1 c.47.1.5

Probab=95.38  E-value=0.0048  Score=51.05  Aligned_cols=70  Identities=11%  Similarity=0.114  Sum_probs=49.9

Q ss_pred             EEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC---HHHHHHHHHhc-CCCCcceEeeCCEEEeecHHHHHHHHc
Q 030327           91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN---EMLRQGLKEYS-SWPTFPQLYIEGEFFGGCDITVEAYKN  166 (179)
Q Consensus        91 vlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d---~~~~~~L~~~s-g~~tvP~VfIdG~~IGG~del~~l~~~  166 (179)
                      .||..     +.|++|.+++-+|++.|++|+.+.|+-.   +...... ... ...++|.+..||..|.....+.++.++
T Consensus         3 ~Lyy~-----~~s~~~~~vr~~L~e~gi~ye~~~v~~~~~~~~~~~~~-~ln~P~gkVPvL~d~g~~l~ES~aI~~YL~~   76 (280)
T 1b8x_A            3 ILGYW-----KIKGLVQPTRLLLEYLEEKYEEHLYERDEGDKWRNKKF-ELGLEFPNLPYYIDGDVKLTQSMAIIRYIAD   76 (280)
T ss_dssp             CCEEE-----SSSTTTHHHHHHHHHTTCCCCCEEECSSTTTTTTSSTT-TTCCSSCCSSBEECSSCEECSHHHHHHHHHH
T ss_pred             EEEEe-----CCCchHHHHHHHHHHcCCCcEEEEeCCCChhhhhhhhh-ccCCCCCCCCEEEECCEEEEcHHHHHHHHHH
Confidence            45666     3799999999999999999988887631   1111111 222 356899999888889888887776543

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=95.28  E-value=0.057  Score=40.58  Aligned_cols=47  Identities=23%  Similarity=0.248  Sum_probs=29.5

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc-------CCCeEEEEcCCC--HHHHHHHHH
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNILEN--EMLRQGLKE  137 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-------gv~y~~vdV~~d--~~~~~~L~~  137 (179)
                      ...++|+...    .||++|......|+++       ++.+..|+++.+  +.+++.+.+
T Consensus        60 gk~vll~F~a----~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~  115 (186)
T 1jfu_A           60 GKTLLVNLWA----TWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKE  115 (186)
T ss_dssp             TSEEEEEEEC----TTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHH
T ss_pred             CCEEEEEEEe----CCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCHHHHHHHHHH
Confidence            3455555554    5999999877766443       456777777754  445555444

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=95.23  E-value=0.14  Score=47.52  Aligned_cols=53  Identities=13%  Similarity=0.134  Sum_probs=37.6

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI  149 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI  149 (179)
                      .++|+...    +||++|++....|.++      ++.+..+|+++++++.    +..|...+|.+++
T Consensus       677 ~v~v~F~a----~wC~~C~~~~p~~~~la~~~~~~~~~~~vd~~~~~~~~----~~~~v~~~Pt~~~  735 (780)
T 3apo_A          677 HWVVDFYA----PWSGPSQNFAPEFELLARMIKGKVRAGKVDCQAYPQTC----QKAGIKAYPSVKL  735 (780)
T ss_dssp             CEEEEEEC----TTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHH----HHTTCCSSSEEEE
T ss_pred             eEEEEEEC----CCCHHHHHHHHHHHHHHHHhcCCceEEEEECCCCHHHH----HhcCCCcCCEEEE
Confidence            35555443    7999999988777543      4678888998877643    3457778999755

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=95.20  E-value=0.16  Score=36.80  Aligned_cols=35  Identities=9%  Similarity=0.085  Sum_probs=22.0

Q ss_pred             CCcEEEEEeeCCCCCCCchHHH-HHHHHHhc-------CCCeEEEEc
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHT-VVQILKSL-------NAPFETVNI  125 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~-ak~lL~~~-------gv~y~~vdV  125 (179)
                      ...|+|+...    .||++|.. +...|.++       ++.+..+++
T Consensus        28 gk~vlv~f~a----~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~   70 (158)
T 3eyt_A           28 GKVIVIEAFQ----MLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHT   70 (158)
T ss_dssp             TSEEEEEEEC----TTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEEC
T ss_pred             CCEEEEEEEC----CcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEe
Confidence            3456665554    59999999 46666443       345555665

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=95.08  E-value=0.08  Score=39.49  Aligned_cols=16  Identities=13%  Similarity=0.439  Sum_probs=14.1

Q ss_pred             cCCCCcceEeeCCEEE
Q 030327          139 SSWPTFPQLYIEGEFF  154 (179)
Q Consensus       139 sg~~tvP~VfIdG~~I  154 (179)
                      .|-..+|.++|||+++
T Consensus       146 ~gv~gTPtfiINGky~  161 (184)
T 4dvc_A          146 SGLTGVPAVVVNNRYL  161 (184)
T ss_dssp             HTCCSSSEEEETTTEE
T ss_pred             cCCCcCCEEEECCEEe
Confidence            4889999999999865

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=94.97  E-value=0.029  Score=47.03  Aligned_cols=53  Identities=23%  Similarity=0.366  Sum_probs=34.9

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc-----C---CCeEEEEcCCCHHHHHHHHHhcCCCCcceEee
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----N---APFETVNILENEMLRQGLKEYSSWPTFPQLYI  149 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----g---v~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI  149 (179)
                      ...++|+...    |||++|++....|.++     +   +.+..+|.+.+.      ....+...+|.+++
T Consensus       267 ~k~~lv~f~a----~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~~~~------~~~~~v~~~Pt~~~  327 (361)
T 3uem_A          267 KKNVFVEFYA----PWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE------VEAVKVHSFPTLKF  327 (361)
T ss_dssp             TCEEEEEEEC----TTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTTCB------CSSCCCCSSSEEEE
T ss_pred             CCcEEEEEec----CcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECCccc------hhhcCCcccCeEEE
Confidence            3445555554    7999999999888664     1   345566665554      23457888999844

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=94.97  E-value=0.055  Score=48.68  Aligned_cols=53  Identities=15%  Similarity=0.229  Sum_probs=37.7

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhc----C----------CCeEEEEcCCCHHHHHHHHHhcCCCCcceEee
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSL----N----------APFETVNILENEMLRQGLKEYSSWPTFPQLYI  149 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~----g----------v~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI  149 (179)
                      .|+|+...    +||++|++....|.+.    .          +.+..||+++++++    .+..+...+|.+++
T Consensus        44 ~VlV~FyA----~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~~l----a~~y~V~~~PTlil  110 (470)
T 3qcp_A           44 PWIVLFYN----DGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDL----CRKYDINFVPRLFF  110 (470)
T ss_dssp             CEEEEEEC----TTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCHHH----HHHTTCCSSCEEEE
T ss_pred             eEEEEEEC----CCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCHHH----HHHcCCCccCeEEE
Confidence            45555554    6999999998888553    2          66888888887654    44457778898853

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=94.95  E-value=0.056  Score=40.90  Aligned_cols=33  Identities=24%  Similarity=0.375  Sum_probs=23.2

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhc-------CCCeEEEEcC
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNIL  126 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~-------gv~y~~vdV~  126 (179)
                      ++|+...    +||++|......|.++       ++.+..++++
T Consensus        49 vlv~F~a----~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d   88 (196)
T 2ywi_A           49 TVIMFIC----NHCPFVKHVQHELVRLANDYMPKGVSFVAINSN   88 (196)
T ss_dssp             EEEEECC----SSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECS
T ss_pred             EEEEEeC----CCCccHHHHHHHHHHHHHHHHhCCcEEEEEECC
Confidence            6666554    6999999776666442       5777788874

>3ppu_A Glutathione-S-transferase; GST fold; HET: GSH; 2.30A {Phanerochaete chrysosporium}

Probab=94.95  E-value=0.059  Score=46.38  Aligned_cols=76  Identities=9%  Similarity=0.085  Sum_probs=53.3

Q ss_pred             hcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCC----eEEEEcCC-----------------------CHHHHHHHHH
Q 030327           85 VTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAP----FETVNILE-----------------------NEMLRQGLKE  137 (179)
Q Consensus        85 i~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~----y~~vdV~~-----------------------d~~~~~~L~~  137 (179)
                      ...++..||...     .||||+++.-+|..+|++    +..++...                       .+...+++.+
T Consensus        73 ~e~gry~Ly~s~-----~CP~a~Rv~i~l~lKGL~~~I~v~~v~~~~~~~gW~f~~~~~~~g~~~d~~~~~e~~~~~y~~  147 (352)
T 3ppu_A           73 PEKGRYHLYVSY-----ACPWATRTLIVRKLKGLEDFIGVTVVSPRMGSNGWPFANVDPFPAADSDPLNNAQHVKDLYLK  147 (352)
T ss_dssp             CCTTSEEEEECS-----SCHHHHHHHHHHHHTTCTTTSEEEECCSCCBTTBSBCTTTSCCTTCCCCTTTCCSBHHHHHHH
T ss_pred             CCCCcEEEEEeC-----CCchHHHHHHHHHHcCCCceeEEEEecCCCCCCCceeccccccCCCCcCcccccccchHHHHH
Confidence            446789999984     899999999999999986    33333210                       0123456666


Q ss_pred             hc----CCCCcceEee---CCEEEeecHHHHHHHH
Q 030327          138 YS----SWPTFPQLYI---EGEFFGGCDITVEAYK  165 (179)
Q Consensus       138 ~s----g~~tvP~VfI---dG~~IGG~del~~l~~  165 (179)
                      ..    |..+||.+..   +|..+.....+.++.+
T Consensus       148 ~nP~g~gr~kVPvL~d~~~g~~vl~ES~aI~~YL~  182 (352)
T 3ppu_A          148 VKPDYDGRFTVPVLWDKHTGTIVNNESSEIIRMFN  182 (352)
T ss_dssp             HCTTCCSCCCSCEEEETTTTEEEECCHHHHHHHHH
T ss_pred             hCCCCCCCeeeeEEEEeCCCCEEEecHHHHHHHHH
Confidence            54    3449999998   4457788888887764

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=94.94  E-value=0.12  Score=38.89  Aligned_cols=40  Identities=15%  Similarity=0.198  Sum_probs=27.7

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc---CCCeEEEEcCCCHH
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL---NAPFETVNILENEM  130 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~---gv~y~~vdV~~d~~  130 (179)
                      ...|+|+...    +||++|.+....|+++   ++.+..|+++++++
T Consensus        58 gk~vll~F~a----~~C~~C~~~~~~l~~l~~~~v~vv~vs~~d~~~  100 (176)
T 3kh7_A           58 GKPALVNVWG----TWCPSCRVEHPELTRLAEQGVVIYGINYKDDNA  100 (176)
T ss_dssp             SSCEEEEEEC----TTCHHHHHHHHHHHHHHHTTCEEEEEEESCCHH
T ss_pred             CCEEEEEEEC----CcCHHHHHHHHHHHHHHHCCCEEEEEeCCCCHH
Confidence            3455555555    5999999887776543   77788888766544

>1bg5_A MAB, fusion protein of alpha-Na,K-ATPase with glutathione S-transferase; ankyrin binding, carrier crystallization, ION transport; 2.60A {Rattus norvegicus} SCOP: a.45.1.1 c.47.1.5

Probab=94.86  E-value=0.0067  Score=48.78  Aligned_cols=72  Identities=13%  Similarity=0.088  Sum_probs=50.0

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCC--CHHHHHHHHHhc-CCCCcceEeeCCEEEeecHHHHHHHHc
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE--NEMLRQGLKEYS-SWPTFPQLYIEGEFFGGCDITVEAYKN  166 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~--d~~~~~~L~~~s-g~~tvP~VfIdG~~IGG~del~~l~~~  166 (179)
                      +.||..     +.|++|.+++-+|.+.|++|+.+.++-  .++......... ...++|.+..||..+.....+.++..+
T Consensus         3 ~~Ly~~-----~~s~~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~~P~g~VPvL~d~~~~l~eS~aI~~yL~~   77 (254)
T 1bg5_A            3 PILGYW-----KIKGLVQPTRLLLEYLEEKYEEHLYERDEGDKWRNKKFELGLEFPNLPYYIDGDVKLTQSMAIIRYIAD   77 (254)
T ss_dssp             CBCCSC-----SCSTTTHHHHHHHHHTTCCCBCCCCCGGGTHHHHHHTTTTCCSSCCSSBCCCSSCCCBSHHHHHHHHHH
T ss_pred             cEEEEe-----CCcchhHHHHHHHHHcCCCceEEeeCCCCHHHHhhcccccCCCCCCCCEEEECCEEEecHHHHHHHHHH
Confidence            345555     479999999999999999999888753  222111100122 456899998788888888887776553

>3ktb_A Arsenical resistance operon trans-acting represso; alpha-beta-alpha sandwich, helix-turn-helix, structural GENO PSI-2; 2.10A {Bacteroides vulgatus}

Probab=94.76  E-value=0.15  Score=37.07  Aligned_cols=72  Identities=17%  Similarity=0.178  Sum_probs=51.9

Q ss_pred             CCcEEEEEeeCCCCCCCc-------------hHHHHHHHHHhcCCCeEEEEcCCCH-------HHHHHHHHhcCCCCcce
Q 030327           87 GNKVVLFMKGTKDFPQCG-------------FSHTVVQILKSLNAPFETVNILENE-------MLRQGLKEYSSWPTFPQ  146 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp-------------~C~~ak~lL~~~gv~y~~vdV~~d~-------~~~~~L~~~sg~~tvP~  146 (179)
                      +.+|.||--.    -+|+             .-....++|++.|++++.+|+..+|       .+.+.|.+ .|...+|.
T Consensus         4 M~~i~ifepa----mCCstGvCG~~vd~eL~~~~~~~~~lk~~Gi~V~RyNL~~~P~~F~~N~~V~~~L~~-~G~~~LP~   78 (106)
T 3ktb_A            4 MKKIEIFDPA----MCCPTGLCGTNINPELMRIAVVIESLKKQGIIVTRHNLRDEPQVYVSNKTVNDFLQK-HGADALPI   78 (106)
T ss_dssp             CCCEEEEECS----CSSTTSCSSSCCCHHHHHHHHHHHHHHHTTCCCEEEETTTCTTHHHHSHHHHHHHHT-TCGGGCSE
T ss_pred             CceEEEechh----hccCCCCcCCCCCHHHHHHHHHHHHHHHCCCEEEEEccccChHHHhcCHHHHHHHHH-cCcccCCE
Confidence            4568888774    2443             2346688999999999999997654       56666665 58899999


Q ss_pred             EeeCCEEE--eec---HHHHHH
Q 030327          147 LYIEGEFF--GGC---DITVEA  163 (179)
Q Consensus       147 VfIdG~~I--GG~---del~~l  163 (179)
                      ++|||+.+  |.+   +++.++
T Consensus        79 ~~VDGevv~~G~yPt~eEl~~~  100 (106)
T 3ktb_A           79 TLVDGEIAVSQTYPTTKQMSEW  100 (106)
T ss_dssp             EEETTEEEECSSCCCHHHHHHH
T ss_pred             EEECCEEEEeccCCCHHHHHHH
Confidence            99999887  433   555554

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=94.75  E-value=0.044  Score=40.21  Aligned_cols=64  Identities=13%  Similarity=0.197  Sum_probs=36.8

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc-------CCCeEEEEcCCC---------------HHHHHHHHHhcCCCCc
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNILEN---------------EMLRQGLKEYSSWPTF  144 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-------gv~y~~vdV~~d---------------~~~~~~L~~~sg~~tv  144 (179)
                      ...++|+..+    +||++|......|.+.       ++.+..++++.+               .+....+.+..|...+
T Consensus        41 gk~vll~F~~----~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  116 (158)
T 3hdc_A           41 GKIVLVNFWA----SWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGANRL  116 (158)
T ss_dssp             TSEEEEEEEC----TTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTTCCSS
T ss_pred             CCEEEEEEEC----CcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHhCCCCc
Confidence            3455555554    6999999877766543       344555555541               0001245555688889


Q ss_pred             ceE-ee--CCEEE
Q 030327          145 PQL-YI--EGEFF  154 (179)
Q Consensus       145 P~V-fI--dG~~I  154 (179)
                      |.+ +|  +|+.+
T Consensus       117 P~~~lid~~G~i~  129 (158)
T 3hdc_A          117 PDTFIVDRKGIIR  129 (158)
T ss_dssp             SEEEEECTTSBEE
T ss_pred             ceEEEEcCCCCEE
Confidence            984 55  55433

>3m1g_A Putative glutathione S-transferase; ECM4-like subfamily, GST_C family, structural genomics, PSI- protein structure initiative; 2.10A {Corynebacterium glutamicum}

Probab=94.57  E-value=0.035  Score=48.21  Aligned_cols=76  Identities=12%  Similarity=0.116  Sum_probs=46.4

Q ss_pred             cCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCC-eEEEEcCC---C-------------------HHHHHHHHHh----
Q 030327           86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAP-FETVNILE---N-------------------EMLRQGLKEY----  138 (179)
Q Consensus        86 ~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~-y~~vdV~~---d-------------------~~~~~~L~~~----  138 (179)
                      ..+++.||..     ..||+|.+++-+|+.+|++ +..+|+..   +                   +.+++.+.+.    
T Consensus        58 e~gr~~LY~~-----~~cP~a~Rv~I~L~lkGL~e~i~vdl~~~~~~~~~W~~~~~P~g~~P~~~~~~l~~~y~~~nP~y  132 (362)
T 3m1g_A           58 EAGRYRLVAA-----RACPWAHRTVITRRLLGLENVISLGLTGPTHDVRSWTFDLDPNHLDPVLQIPRLQDAYFNRFPDY  132 (362)
T ss_dssp             CTTSEEEEEC-----TTCHHHHHHHHHHHHHTCTTTSEEEECCCCCC---------------------------------
T ss_pred             CCCeEEEEec-----CCCccHHHHHHHHHHhCCCceEEEeccCCccCCCCcEecCCCCCCCccchhhhHHHHHHHhCCCC
Confidence            3578999998     4899999999999999997 44455532   1                   1112222222    


Q ss_pred             cCCCCcceEee---CCEEEeecHHHHHHHHc
Q 030327          139 SSWPTFPQLYI---EGEFFGGCDITVEAYKN  166 (179)
Q Consensus       139 sg~~tvP~VfI---dG~~IGG~del~~l~~~  166 (179)
                      .|..+||+|.-   ++..+-....|.++..+
T Consensus       133 ~Gr~tVPvL~D~~~g~~Vl~ES~AIl~YL~e  163 (362)
T 3m1g_A          133 PRGITVPALVEESSKKVVTNDYPSITIDFNL  163 (362)
T ss_dssp             ---CCSSEEEETTTCCEEECCHHHHHHHHHH
T ss_pred             CCCcceeEEEEcCCCCEEeecHHHHHHHHHH
Confidence            25568999976   34444667677766543

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=94.52  E-value=0.2  Score=37.90  Aligned_cols=64  Identities=14%  Similarity=0.061  Sum_probs=37.3

Q ss_pred             HHhhhcCCcEEEEEeeCCCCCCCchHHHH-HHHH-------HhcCCC-eEEEEcCCCHHHHHHHHHhcCC-CCcceEe
Q 030327           81 LDKVVTGNKVVLFMKGTKDFPQCGFSHTV-VQIL-------KSLNAP-FETVNILENEMLRQGLKEYSSW-PTFPQLY  148 (179)
Q Consensus        81 l~~li~~~~Vvlysk~t~~~p~Cp~C~~a-k~lL-------~~~gv~-y~~vdV~~d~~~~~~L~~~sg~-~tvP~Vf  148 (179)
                      +.++.+..+++|+.-   ++.|||.|..- ...|       ++.|+. +.-|+++.....++.+++ .|. ..+|.+.
T Consensus        37 l~~~~~gk~vvl~~~---~a~wcp~C~~eh~p~l~~~~~~~~~~g~~~vv~Is~d~~~~~~~~~~~-~~~~~~fp~l~  110 (171)
T 2pwj_A           37 VNDIFKDKKVVIFGL---PGAYTGVCSSKHVPPYKHNIDKFKAKGVDSVICVAINDPYTVNAWAEK-IQAKDAIEFYG  110 (171)
T ss_dssp             HHHHHTTSEEEEEEC---SCTTCTTHHHHTHHHHHHTHHHHHHTTCSEEEEEESSCHHHHHHHHHH-TTCTTTSEEEE
T ss_pred             HHHHhCCCCEEEEEe---cCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHH-hCCCCceEEEE
Confidence            344434545555433   23599999975 4433       345888 888888654445554444 355 2677543

>3kgk_A Arsenical resistance operon trans-acting represso; alpha+beta, chaperone, DNA-binding, RE transcription, transcription regulation; 1.40A {Escherichia coli} PDB: 3mwh_A

Probab=94.47  E-value=0.088  Score=38.57  Aligned_cols=56  Identities=21%  Similarity=0.268  Sum_probs=43.5

Q ss_pred             HHHHHHHhcCCCeEEEEcCCCH-------HHHHHHHHhcCCCCcceEeeCCEEE--eec---HHHHHHH
Q 030327          108 TVVQILKSLNAPFETVNILENE-------MLRQGLKEYSSWPTFPQLYIEGEFF--GGC---DITVEAY  164 (179)
Q Consensus       108 ~ak~lL~~~gv~y~~vdV~~d~-------~~~~~L~~~sg~~tvP~VfIdG~~I--GG~---del~~l~  164 (179)
                      ...++|++.|++++.+|+..++       .+.+.|.+. |...+|.++|||+.+  |.+   +++.++.
T Consensus        31 ~~~~~lk~~Gi~V~RyNL~~~P~aF~~N~~V~~~L~~~-G~~~LP~~~VDGevv~~G~yPt~eEl~~~l   98 (110)
T 3kgk_A           31 TDVQWLKQSGVQIERFNLAQQPMSFVQNEKVKAFIEAS-GAEGLPLLLLDGETVMAGRYPKRAELARWF   98 (110)
T ss_dssp             HHHHHHHHHTCCEEEEETTTCTTHHHHSHHHHHHHHHH-CGGGCCEEEETTEEEEESSCCCHHHHHHHH
T ss_pred             HHHHHHHHCCCeEEEEccccChHHHhcCHHHHHHHHHc-CcccCCEEEECCEEEEeccCCCHHHHHHHh
Confidence            5688999999999999997654       566666654 889999999999887  433   5666554

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=94.40  E-value=0.12  Score=44.04  Aligned_cols=59  Identities=10%  Similarity=0.127  Sum_probs=36.6

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHH---------HHH----HhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCE
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVV---------QIL----KSLNAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGE  152 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak---------~lL----~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~  152 (179)
                      ..|+|+...    |||++|...+         +.+    +..++.+..||++.++++.    +..|-..+|.+  |.+|+
T Consensus        31 ~~vlV~FyA----pWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~~~~l~----~~~~V~~~PTl~~f~~G~  102 (367)
T 3us3_A           31 EVLALLYHE----PPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVA----KKLGLTEEDSIYVFKEDE  102 (367)
T ss_dssp             SEEEEEEEC----CCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTTTHHHH----HHHTCCSTTEEEEEETTE
T ss_pred             CeEEEEEEC----CCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCcccHHHH----HHcCCCcCceEEEEECCc
Confidence            334444443    7999985443         111    2235778899998877653    34466778876  66887


Q ss_pred             EE
Q 030327          153 FF  154 (179)
Q Consensus       153 ~I  154 (179)
                      .+
T Consensus       103 ~~  104 (367)
T 3us3_A          103 VI  104 (367)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=94.40  E-value=0.17  Score=38.53  Aligned_cols=36  Identities=8%  Similarity=0.259  Sum_probs=24.3

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHh-------cCCCeEEEEcC
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKS-------LNAPFETVNIL  126 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~-------~gv~y~~vdV~  126 (179)
                      ...|+|+...    .||+.|......|.+       .++.+..|+++
T Consensus        48 Gk~vll~F~a----twC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d   90 (190)
T 2vup_A           48 GSPLLIYNVA----SKCGYTKGGYETATTLYNKYKSQGFTVLAFPCN   90 (190)
T ss_dssp             TSCEEEEEEC----SSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECC
T ss_pred             CCEEEEEEec----CCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcC
Confidence            4456666554    599999766665543       35777778776

>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17

Probab=94.37  E-value=0.14  Score=37.28  Aligned_cols=75  Identities=16%  Similarity=0.242  Sum_probs=47.9

Q ss_pred             cCCcEEEEEeeCCCCCCCchHH------HHHHHHHhc--------CCCeEEEEcCCC-----HHHHHHHHHhc-CCCCcc
Q 030327           86 TGNKVVLFMKGTKDFPQCGFSH------TVVQILKSL--------NAPFETVNILEN-----EMLRQGLKEYS-SWPTFP  145 (179)
Q Consensus        86 ~~~~Vvlysk~t~~~p~Cp~C~------~ak~lL~~~--------gv~y~~vdV~~d-----~~~~~~L~~~s-g~~tvP  145 (179)
                      ++-.|+||+..    .-|.-|.      ...+||+..        .+.|+++||...     +..++...++- .---+|
T Consensus         6 ~~v~i~VYGAe----~iCASCVnaPSSkeTyEWLqAal~RKyp~~~f~~~YIDI~~~~~~l~d~~~~~ae~I~ede~FYP   81 (111)
T 1xg8_A            6 QSNAVVVYGAD----VICASCVNAPTSKDIYDWLQPLLKRKYPNISFKYTYIDITKDNDNLTDHDLQFIERIEQDELFYP   81 (111)
T ss_dssp             SCEEEEEEECS----SCCGGGSSSCCHHHHHHHHHHHHHHHCTTSCEEEEEEETTTC---CCHHHHHHHHHHHTTSSCSS
T ss_pred             eEEEEEEEccc----ccchhccCCCCchhHHHHHHHHHhCcCCCCceEEEEEeccCCccchhHHHHHHHHHHhhccccce
Confidence            34458999997    4677774      556666432        345889998543     22233333332 334589


Q ss_pred             eEeeCCEEEe-ecHHHHHHH
Q 030327          146 QLYIEGEFFG-GCDITVEAY  164 (179)
Q Consensus       146 ~VfIdG~~IG-G~del~~l~  164 (179)
                      .|.+||+.|| |.=.++..+
T Consensus        82 lV~indeiVaEGnp~LK~I~  101 (111)
T 1xg8_A           82 LITMNDEYVADGYIQTKQIT  101 (111)
T ss_dssp             EEEETTEEEEESSCCHHHHH
T ss_pred             EEEECCEEeecCCccHHHHH
Confidence            9999999998 665666654

>2fno_A AGR_PAT_752P; thioredoxin fold, GST C-terminal domain-like fold, structura genomics, joint center for structural genomics, JCSG; 2.00A {Agrobacterium tumefaciens} SCOP: a.45.1.1 c.47.1.5

Probab=94.16  E-value=0.081  Score=42.44  Aligned_cols=72  Identities=10%  Similarity=-0.031  Sum_probs=51.7

Q ss_pred             cCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHH-----hcCCCCcceE--eeCCEEEeecH
Q 030327           86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKE-----YSSWPTFPQL--YIEGEFFGGCD  158 (179)
Q Consensus        86 ~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~-----~sg~~tvP~V--fIdG~~IGG~d  158 (179)
                      +...+.+|..     +.++.|.+++-+|.+.|++|+.++++.   ....++.     .+-..++|.+  ..||..+....
T Consensus        16 ~~~~~~Ly~~-----~~~~~~~~vrl~L~e~gi~ye~~~~~~---~~~~~~~~~~~~~nP~gkVPvL~~~d~g~~l~ES~   87 (248)
T 2fno_A           16 GMNTFDLYYW-----PVPFRGQLIRGILAHCGCSWDEHDVDA---IEGLMDCGAEKQPVAFMGPPVLIDRERNFAISQMP   87 (248)
T ss_dssp             SCBSEEEECC-----SSSSTTHHHHHHHHHTTCCEECCCHHH---HHHHHHSCGGGSSSCCSSSCEEEETTTTEEEESHH
T ss_pred             CCCceEEEec-----CCCCchHHHHHHHHHcCCCcEeeccch---HHHHHhccccccCCCCCCCCEEEeccCCEEEecHH
Confidence            3456888887     356789999999999999999886631   1122221     3456789999  56788888887


Q ss_pred             HHHHHHH
Q 030327          159 ITVEAYK  165 (179)
Q Consensus       159 el~~l~~  165 (179)
                      .+.++..
T Consensus        88 AI~~YLa   94 (248)
T 2fno_A           88 AIAIYLG   94 (248)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7777654

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=94.10  E-value=0.18  Score=38.56  Aligned_cols=43  Identities=21%  Similarity=0.080  Sum_probs=27.0

Q ss_pred             CCcEEEEEe-eCCCCCCCchHHHHHHHHHhc-------CCCeEEEEcCCCHHHHH
Q 030327           87 GNKVVLFMK-GTKDFPQCGFSHTVVQILKSL-------NAPFETVNILENEMLRQ  133 (179)
Q Consensus        87 ~~~Vvlysk-~t~~~p~Cp~C~~ak~lL~~~-------gv~y~~vdV~~d~~~~~  133 (179)
                      ...++|+.. .    .||+.|......|.++       ++.+..|+++..+.+++
T Consensus        45 gk~vvl~F~~a----~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~   95 (195)
T 2bmx_A           45 GKWRVVFFWPK----DFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQ   95 (195)
T ss_dssp             TCEEEEEECSC----TTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHH
T ss_pred             CCcEEEEEEcC----CCCCCcHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHH
Confidence            345666655 4    5999999877666443       56677777765344433

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=93.98  E-value=0.2  Score=35.76  Aligned_cols=39  Identities=15%  Similarity=0.058  Sum_probs=25.6

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc-------CCCeEEEEcCCCH
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNILENE  129 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-------gv~y~~vdV~~d~  129 (179)
                      ...|+|+...    .||++|......|.++       ++.+..|+++.+.
T Consensus        32 gk~vll~F~a----~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~   77 (143)
T 4fo5_A           32 GRYTLLNFWA----AYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKE   77 (143)
T ss_dssp             CCEEEEEEEC----TTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCH
T ss_pred             CCEEEEEEEc----CcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCH
Confidence            3456666555    5999999987777553       3445566666554

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=93.84  E-value=0.16  Score=36.92  Aligned_cols=35  Identities=11%  Similarity=0.140  Sum_probs=23.6

Q ss_pred             cEEEEEe-eCCCCCCCchHHHHHHHHHhc-------CCCeEEEEcCC
Q 030327           89 KVVLFMK-GTKDFPQCGFSHTVVQILKSL-------NAPFETVNILE  127 (179)
Q Consensus        89 ~Vvlysk-~t~~~p~Cp~C~~ak~lL~~~-------gv~y~~vdV~~  127 (179)
                      .++|+.. +    .||+.|......|.+.       ++.+..|+++.
T Consensus        38 ~vvl~F~~a----~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d~   80 (160)
T 1xvw_A           38 NVLLVFFPL----AFTGICQGELDQLRDHLPEFENDDSAALAISVGP   80 (160)
T ss_dssp             EEEEEECSC----TTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCC
T ss_pred             CEEEEEECC----CCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCCC
Confidence            4666554 4    5999999888887664       34555666654

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=93.84  E-value=0.044  Score=47.75  Aligned_cols=54  Identities=20%  Similarity=0.359  Sum_probs=36.7

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc--------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL--------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI  149 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~--------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI  149 (179)
                      ...|+|+...    +||++|++....|.++        ++.+..+|++.+ +    +....+...+|.+++
T Consensus       370 ~k~vlv~f~a----~wC~~C~~~~p~~~~l~~~~~~~~~v~~~~id~~~~-~----~~~~~~v~~~Pt~~~  431 (481)
T 3f8u_A          370 NKDVLIEFYA----PWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN-D----VPSPYEVRGFPTIYF  431 (481)
T ss_dssp             TCEEEEEEEC----TTBHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTSS-C----CCTTCCCCSSSEEEE
T ss_pred             CCcEEEEEec----CcChhHHHhhHHHHHHHHHhccCCCEEEEEEECCch-h----hHhhCCCcccCEEEE
Confidence            3456666665    7999999999888654        244666777665 2    333457778998865

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=92.90  E-value=0.011  Score=43.42  Aligned_cols=30  Identities=10%  Similarity=0.216  Sum_probs=19.5

Q ss_pred             CCCchHHHHHHHHHh-c--------CCCeEEEEcCCCHH
Q 030327          101 PQCGFSHTVVQILKS-L--------NAPFETVNILENEM  130 (179)
Q Consensus       101 p~Cp~C~~ak~lL~~-~--------gv~y~~vdV~~d~~  130 (179)
                      +||++|......|.+ .        ++.+..++++++++
T Consensus        43 ~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~~   81 (159)
T 2ls5_A           43 SWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLE   81 (159)
Confidence            599999987777765 2        34455556655433

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=93.81  E-value=0.14  Score=42.98  Aligned_cols=63  Identities=11%  Similarity=0.153  Sum_probs=38.2

Q ss_pred             HHhhhcCCc-EEEEEeeCCCCCCCchHHHH-----------HH---HHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcc
Q 030327           81 LDKVVTGNK-VVLFMKGTKDFPQCGFSHTV-----------VQ---ILKSLNAPFETVNILENEMLRQGLKEYSSWPTFP  145 (179)
Q Consensus        81 l~~li~~~~-Vvlysk~t~~~p~Cp~C~~a-----------k~---lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP  145 (179)
                      ++++++.++ ++|+...    |||+ |++.           .+   .|+..++.+..||+++++++.    +..|...+|
T Consensus        21 f~~~i~~~~~~lV~F~a----~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~~~~l~----~~~~v~~~P   91 (350)
T 1sji_A           21 FKQVLKKYDVLCLYYHE----SVSS-DKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKKEAKLA----KKLGFDEEG   91 (350)
T ss_dssp             HHHHHTTCSEEEEEEEC----CSCS-SSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTTTHHHH----HHHTCCSTT
T ss_pred             HHHHHhhCCeEEEEEEC----CCCc-chhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCCCHHHH----HhcCCCccc
Confidence            555555544 4444443    7999 8533           12   222335778889998886544    334667788


Q ss_pred             eE--eeCCE
Q 030327          146 QL--YIEGE  152 (179)
Q Consensus       146 ~V--fIdG~  152 (179)
                      .+  |.+|+
T Consensus        92 t~~~~~~g~  100 (350)
T 1sji_A           92 SLYVLKGDR  100 (350)
T ss_dssp             EEEEEETTE
T ss_pred             eEEEEECCc
Confidence            77  45886

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=93.74  E-value=0.17  Score=34.83  Aligned_cols=26  Identities=19%  Similarity=0.266  Sum_probs=18.3

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL  116 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~  116 (179)
                      ...++|+..+    +||++|......|.++
T Consensus        22 gk~~lv~f~~----~~C~~C~~~~~~l~~~   47 (138)
T 4evm_A           22 GKKVYLKFWA----SWCSICLASLPDTDEI   47 (138)
T ss_dssp             TSEEEEEECC----TTCHHHHHHHHHHHHH
T ss_pred             CCEEEEEEEc----CcCHHHHHHHHHHHHH
Confidence            4456665554    6999999888777553

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=93.47  E-value=0.21  Score=36.74  Aligned_cols=40  Identities=10%  Similarity=0.047  Sum_probs=25.7

Q ss_pred             EEEEEe-eCCCCCCCchHHHHHHHHHhc-------CCCeEEEEcCCCHHHHH
Q 030327           90 VVLFMK-GTKDFPQCGFSHTVVQILKSL-------NAPFETVNILENEMLRQ  133 (179)
Q Consensus        90 Vvlysk-~t~~~p~Cp~C~~ak~lL~~~-------gv~y~~vdV~~d~~~~~  133 (179)
                      |+|+.. +    .||++|......|.+.       |+.+..|+++..+.+++
T Consensus        32 vvl~F~~a----~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~   79 (161)
T 3drn_A           32 IVLYFYPK----DDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHKR   79 (161)
T ss_dssp             EEEEECSC----TTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESCCHHHHHH
T ss_pred             EEEEEEcC----CCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHH
Confidence            666665 4    5999999877777543       46666666664344433

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=93.41  E-value=0.63  Score=39.90  Aligned_cols=36  Identities=11%  Similarity=0.076  Sum_probs=23.6

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc-------CCCeEEEEcC
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNIL  126 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-------gv~y~~vdV~  126 (179)
                      ...|+|+...    +||++|.+....|.++       ++.+..|+++
T Consensus        82 GK~vLl~F~a----twC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d  124 (352)
T 2hyx_A           82 GKVVLIDFWA----YSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTP  124 (352)
T ss_dssp             TSEEEEEEEC----TTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCEEEEEEEC----CCChhHHHHHHHHHHHHHHhhcCCeEEEEEECC
Confidence            4456665554    6999999877766443       4566666654

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=93.37  E-value=0.11  Score=46.85  Aligned_cols=56  Identities=13%  Similarity=0.183  Sum_probs=36.7

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhc---------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSL---------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI  149 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~---------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI  149 (179)
                      ..|+|+...    +||++|++....|++.         ++.+..+|++.+.  ...+.+..|...+|.+++
T Consensus        31 k~vlV~FyA----~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~--~~~l~~~~~V~~~PTl~~   95 (519)
T 3t58_A           31 SAWAVEFFA----SWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEET--NSAVCREFNIAGFPTVRF   95 (519)
T ss_dssp             SEEEEEEEC----TTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGG--GHHHHHHTTCCSBSEEEE
T ss_pred             CeEEEEEEC----CCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccc--cHHHHHHcCCcccCEEEE
Confidence            345555554    6999999998888553         2557777775421  234455568888998843

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=93.31  E-value=0.31  Score=37.46  Aligned_cols=43  Identities=12%  Similarity=-0.025  Sum_probs=27.0

Q ss_pred             CCcEEEEEe-eCCCCCCCchHHHHHHHHHhc-------CCCeEEEEcCCCHHHHH
Q 030327           87 GNKVVLFMK-GTKDFPQCGFSHTVVQILKSL-------NAPFETVNILENEMLRQ  133 (179)
Q Consensus        87 ~~~Vvlysk-~t~~~p~Cp~C~~ak~lL~~~-------gv~y~~vdV~~d~~~~~  133 (179)
                      ...++|+.. .    .||+.|......|.++       ++.+..|+++.....++
T Consensus        36 gk~vvl~F~~~----~~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is~D~~~~~~~   86 (202)
T 1uul_A           36 GKWLVLFFYPM----DFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLA   86 (202)
T ss_dssp             TSEEEEEECSC----TTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHH
T ss_pred             CCeEEEEEECC----CCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHH
Confidence            345666555 4    5999999777666443       56677777765444443

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=93.17  E-value=0.56  Score=36.20  Aligned_cols=64  Identities=13%  Similarity=0.019  Sum_probs=36.8

Q ss_pred             HHhhhcCCcEEEEEeeCCCCCCCchHHH-HHHHH-------HhcCCC-eEEEEcCCCHHHHHHHHHhcCCC-CcceEe
Q 030327           81 LDKVVTGNKVVLFMKGTKDFPQCGFSHT-VVQIL-------KSLNAP-FETVNILENEMLRQGLKEYSSWP-TFPQLY  148 (179)
Q Consensus        81 l~~li~~~~Vvlysk~t~~~p~Cp~C~~-ak~lL-------~~~gv~-y~~vdV~~d~~~~~~L~~~sg~~-tvP~Vf  148 (179)
                      +.++.+..+|+|+.-   ++.|||.|.. -..-|       ++.|+. +.-|++++....++.+++ .+.+ .+|.+.
T Consensus        50 L~d~~~Gk~vvL~f~---~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~f~~~-~~~~~~fp~l~  123 (184)
T 3uma_A           50 TELLFKGKRVVLFAV---PGAFTPTCSLNHLPGYLENRDAILARGVDDIAVVAVNDLHVMGAWATH-SGGMGKIHFLS  123 (184)
T ss_dssp             HHHHHTTSEEEEEEE---SCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHH-HTCTTTSEEEE
T ss_pred             HHHHhCCCCEEEEEE---cCCCCCCcCHHHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHHHHH-hCCCCceEEEE
Confidence            444445555555543   1259999998 33333       335788 888888654444444444 3554 477654

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=93.13  E-value=0.31  Score=36.13  Aligned_cols=59  Identities=22%  Similarity=0.160  Sum_probs=34.4

Q ss_pred             hcCCcEEEEEe-eCCCCCCCchHH-HHHHH-------HHhcCCC-eEEEEcCCCHHHHHHHHHhcCCC-CcceEe
Q 030327           85 VTGNKVVLFMK-GTKDFPQCGFSH-TVVQI-------LKSLNAP-FETVNILENEMLRQGLKEYSSWP-TFPQLY  148 (179)
Q Consensus        85 i~~~~Vvlysk-~t~~~p~Cp~C~-~ak~l-------L~~~gv~-y~~vdV~~d~~~~~~L~~~sg~~-tvP~Vf  148 (179)
                      .+...++|+.. +    .||+.|. .-..-       +++.|+. +--|.++....+++.+++ .+.. .+|.+.
T Consensus        33 ~~gk~vvl~f~~~----~~c~~C~~~e~~~l~~~~~~~~~~~v~~vv~Is~d~~~~~~~~~~~-~~~~~~~~~l~  102 (162)
T 1tp9_A           33 VAGKKVILFGVPG----AFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVNDPFVMKAWAKS-YPENKHVKFLA  102 (162)
T ss_dssp             HTTSEEEEEEESC----TTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHT-CTTCSSEEEEE
T ss_pred             hCCCcEEEEEeCC----CCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHh-cCCCCCeEEEE
Confidence            34556676665 4    4999999 33222       3446888 888888654444444443 3443 466543

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=93.04  E-value=0.095  Score=37.88  Aligned_cols=56  Identities=13%  Similarity=0.143  Sum_probs=37.2

Q ss_pred             hhhcC-CcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCC--cceE
Q 030327           83 KVVTG-NKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPT--FPQL  147 (179)
Q Consensus        83 ~li~~-~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~t--vP~V  147 (179)
                      ++++. .+|+++...    + |+.|+.+...|++.      .+.|..+|+++++++    .+..|-..  +|.+
T Consensus        18 ~~~~~~~pv~v~f~a----~-~~~c~~~~p~l~~~A~~~~gk~~f~~vd~d~~~~~----a~~~gi~~~~iPtl   82 (133)
T 2djk_A           18 DYMSAGIPLAYIFAE----T-AEERKELSDKLKPIAEAQRGVINFGTIDAKAFGAH----AGNLNLKTDKFPAF   82 (133)
T ss_dssp             HHHHTTSCEEEEECS----C-SSSHHHHHHHHHHHHHSSTTTSEEEEECTTTTGGG----TTTTTCCSSSSSEE
T ss_pred             HHhcCCCCEEEEEec----C-hhhHHHHHHHHHHHHHHhCCeEEEEEEchHHhHHH----HHHcCCCcccCCEE
Confidence            33443 446555554    4 89999888888653      366888998877653    34456666  9987

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=93.01  E-value=0.23  Score=36.89  Aligned_cols=35  Identities=17%  Similarity=0.268  Sum_probs=21.9

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHh-------cCCCeEEEEcC
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKS-------LNAPFETVNIL  126 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~-------~gv~y~~vdV~  126 (179)
                      ...|+|+...    .||+.|. ....|.+       .++.+..++++
T Consensus        32 Gk~vll~F~a----~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d   73 (171)
T 3cmi_A           32 GKVVLIVNVA----SKCGFTP-QYKELEALYKRYKDEGFTIIGFPCN   73 (171)
T ss_dssp             TCEEEEEEEE----SSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEEC
T ss_pred             CCEEEEEEEe----cCCCcch-hHHHHHHHHHHhccCCeEEEEEECc
Confidence            4455555555    5999999 6555543       24666666663

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=92.78  E-value=0.45  Score=37.56  Aligned_cols=61  Identities=8%  Similarity=0.107  Sum_probs=34.0

Q ss_pred             HHhhhcCCcEEEEEe-eCCCCCCCchHH-HHHHH-------HHhcCC-CeEEEEcCCCHHHHHHHHHhcCCCCcce
Q 030327           81 LDKVVTGNKVVLFMK-GTKDFPQCGFSH-TVVQI-------LKSLNA-PFETVNILENEMLRQGLKEYSSWPTFPQ  146 (179)
Q Consensus        81 l~~li~~~~Vvlysk-~t~~~p~Cp~C~-~ak~l-------L~~~gv-~y~~vdV~~d~~~~~~L~~~sg~~tvP~  146 (179)
                      +.++.+...|+|+.. +    .|||.|. .-...       +++.|+ .+.-|.++.....++.+++ .+...+|.
T Consensus        27 l~~~~~gk~vvl~f~~a----~~cp~C~~~e~~~l~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~-~~~~~~~~   97 (241)
T 1nm3_A           27 TSELFDNKTVIVFSLPG----AFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVNDTFVMNAWKED-EKSENISF   97 (241)
T ss_dssp             HHHHHTTSEEEEEEESC----SSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHH-TTCTTSEE
T ss_pred             HHHHhCCCeEEEEEeCC----CCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEcCCHHHHHHHHHh-cCCCceEE
Confidence            344334556777664 3    4999999 33333       344578 6777777654444444443 34333553

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=92.70  E-value=0.19  Score=37.72  Aligned_cols=34  Identities=12%  Similarity=0.238  Sum_probs=19.8

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHH----hcC--CCeEEEEc
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILK----SLN--APFETVNI  125 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~----~~g--v~y~~vdV  125 (179)
                      ..++|+...    +||++|......|+    +++  +.+..+++
T Consensus        34 k~vlv~F~a----~~C~~C~~~~~~l~~l~~~~~~~~~~v~v~~   73 (188)
T 2cvb_A           34 PLLAVVFMC----NHCPYVKGSIGELVALAERYRGKVAFVGINA   73 (188)
T ss_dssp             SEEEEEEEC----SSCHHHHTTHHHHHHHHHHTTTTEEEEEEEC
T ss_pred             CEEEEEEEC----CCCccHHHHHHHHHHHHHHhhcCeEEEEEEc
Confidence            445555554    59999997555554    333  44445555

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=92.41  E-value=0.55  Score=35.88  Aligned_cols=64  Identities=14%  Similarity=0.029  Sum_probs=36.1

Q ss_pred             HHhhhcCCcEEEEEeeCCCCCCCchHHH--HHHH------HHhcCCCeEE-EEcCCCHHHHHHHHHhcCCC-CcceEe
Q 030327           81 LDKVVTGNKVVLFMKGTKDFPQCGFSHT--VVQI------LKSLNAPFET-VNILENEMLRQGLKEYSSWP-TFPQLY  148 (179)
Q Consensus        81 l~~li~~~~Vvlysk~t~~~p~Cp~C~~--ak~l------L~~~gv~y~~-vdV~~d~~~~~~L~~~sg~~-tvP~Vf  148 (179)
                      +.++.+..+|+||..   ++.|||.|..  +..+      +++.|+.+.- +..+.....++.+++ .+.+ .+|.+.
T Consensus        37 L~d~~~gk~vvL~f~---pa~wcp~C~~~e~p~l~~~~~~~~~~gv~vv~~iS~D~~~~~~~f~~~-~~~~~~fp~l~  110 (173)
T 3mng_A           37 LAELFKGKKGVLFGV---PGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRA-HKAEGKVRLLA  110 (173)
T ss_dssp             HHHHTTTSEEEEEEC---SCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHH-TTCTTTCEEEE
T ss_pred             hHHHhCCCcEEEEEE---eCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHH-hCCCCceEEEE
Confidence            455555666766654   1259999993  3333      2345777764 676543444444444 4554 577553

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=92.40  E-value=0.62  Score=35.07  Aligned_cols=63  Identities=14%  Similarity=0.063  Sum_probs=36.9

Q ss_pred             HHhhhcCCcEEEEEe-eCCCCCCCchHHH-HHHHH-------HhcCC-CeEEEEcCCCHHHHHHHHHhcCCC-CcceEe
Q 030327           81 LDKVVTGNKVVLFMK-GTKDFPQCGFSHT-VVQIL-------KSLNA-PFETVNILENEMLRQGLKEYSSWP-TFPQLY  148 (179)
Q Consensus        81 l~~li~~~~Vvlysk-~t~~~p~Cp~C~~-ak~lL-------~~~gv-~y~~vdV~~d~~~~~~L~~~sg~~-tvP~Vf  148 (179)
                      +.++++..+|+|+.. +    .|||.|.. -...|       ++.|+ .+.-|.++.....++.+++. +.+ .+|.+.
T Consensus        25 L~d~~~Gk~vvl~f~~a----~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~~~~~~-~~~~~fp~l~   98 (167)
T 2wfc_A           25 MAELFAGKKGVLFAVPG----AFTPGSSKTHLPGYVEQAAAIHGKGVDIIACMAVNDSFVMDAWGKAH-GADDKVQMLA   98 (167)
T ss_dssp             HHHHTTTSEEEEEEESC----TTCHHHHHTHHHHHHHTHHHHHHTTCCEEEEEESSCHHHHHHHHHHT-TCTTTSEEEE
T ss_pred             HHHHhCCCcEEEEEeCC----CCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHhc-CCCcceEEEE
Confidence            344445556666654 3    49999998 33333       34578 77777776544455554443 443 377553

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=92.37  E-value=0.6  Score=33.68  Aligned_cols=37  Identities=8%  Similarity=0.130  Sum_probs=22.9

Q ss_pred             CCcEEEEEeeCCCCCCCch-HHHHHHHHHhc-----------CCCeEEEEcCC
Q 030327           87 GNKVVLFMKGTKDFPQCGF-SHTVVQILKSL-----------NAPFETVNILE  127 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~-C~~ak~lL~~~-----------gv~y~~vdV~~  127 (179)
                      ...++|+...    .||+. |......|.+.           ++.+..|+++.
T Consensus        23 gk~vll~f~~----~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~   71 (164)
T 2ggt_A           23 GQWLLIYFGF----THCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDP   71 (164)
T ss_dssp             TCEEEEEEEC----TTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCT
T ss_pred             CCEEEEEEEe----CCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCC
Confidence            4456666655    59997 98766655332           45566666654

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=91.76  E-value=0.43  Score=44.16  Aligned_cols=57  Identities=12%  Similarity=0.125  Sum_probs=38.9

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CCE
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGE  152 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG~  152 (179)
                      ..|+|+...    +||++|++....|.+.      ++.+..+|+++++++    .+..|-..+|.+++  +|+
T Consensus       456 ~~vlv~F~a----~wC~~c~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~~g~  520 (780)
T 3apo_A          456 EPWLVDFFA----PWSPPSRALLPELRKASTLLYGQLKVGTLDCTIHEGL----CNMYNIQAYPTTVVFNQSS  520 (780)
T ss_dssp             SCEEEEEEC----TTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHH----HHHTTCCSSSEEEEEETTE
T ss_pred             CeEEEEEEC----CCCHHHHHHhHHHHHHHHHhcCCeEEEEEeCCCCHHH----HHHcCCCcCCeEEEEcCCc
Confidence            345554443    6999999988887543      467888898877664    34456777898744  554

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=91.30  E-value=1.1  Score=32.60  Aligned_cols=36  Identities=14%  Similarity=0.166  Sum_probs=22.9

Q ss_pred             CCcEEEEEeeCCCCCCCch-HHHHHHHHHh----c-------CCCeEEEEcC
Q 030327           87 GNKVVLFMKGTKDFPQCGF-SHTVVQILKS----L-------NAPFETVNIL  126 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~-C~~ak~lL~~----~-------gv~y~~vdV~  126 (179)
                      ...++|+...    .||+. |......|++    +       ++.+..|+++
T Consensus        26 gk~vll~F~~----~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d   73 (171)
T 2rli_A           26 GQWVLMYFGF----THCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVD   73 (171)
T ss_dssp             TSEEEEEEEC----TTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESC
T ss_pred             CCEEEEEEEc----CCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEEC
Confidence            3456666665    59998 9876655533    2       4556666766

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=91.16  E-value=0.61  Score=34.94  Aligned_cols=36  Identities=14%  Similarity=0.087  Sum_probs=23.1

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHh-------cCCCeEEEEcC
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKS-------LNAPFETVNIL  126 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~-------~gv~y~~vdV~  126 (179)
                      ...|+|+...    .||+.|......|.+       .++.+..|+++
T Consensus        47 gk~vll~F~a----twC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d   89 (183)
T 2obi_A           47 GFVCIVTNVA----SQCGKTEVNYTQLVDLHARYAECGLRILAFPCN   89 (183)
T ss_dssp             TSEEEEEEEC----SSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCEEEEEEeC----CCCCCcHHHHHHHHHHHHHHhcCCeEEEEEECC
Confidence            4455665554    599999876666543       34666667665

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=91.08  E-value=0.35  Score=37.80  Aligned_cols=33  Identities=12%  Similarity=0.247  Sum_probs=22.2

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhc-------CCCeEEEEcC
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNIL  126 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~-------gv~y~~vdV~  126 (179)
                      |+|+...    .||++|......|.++       ++.+..|+++
T Consensus        62 vll~F~a----~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d  101 (218)
T 3u5r_E           62 LLVAFIS----NRCPFVVLIREALAKFAGDYAGQGLAVVAINSN  101 (218)
T ss_dssp             EEEEECC----SSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECS
T ss_pred             EEEEEEC----CCCccHHHHHHHHHHHHHHHHhCCcEEEEEECC
Confidence            6666655    6999999776666432       4566677774

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=91.00  E-value=0.63  Score=34.95  Aligned_cols=47  Identities=11%  Similarity=0.204  Sum_probs=28.7

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHh-------cCCCeEEEEcCC-------C-HHHHHHHHH
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKS-------LNAPFETVNILE-------N-EMLRQGLKE  137 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~-------~gv~y~~vdV~~-------d-~~~~~~L~~  137 (179)
                      ...|+|+...    .||+.|.+....|++       .++.+..|+++.       + +++++.+++
T Consensus        49 Gk~vlv~F~a----twC~~C~~~~p~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~  110 (181)
T 2p31_A           49 GSVSLVVNVA----SECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARR  110 (181)
T ss_dssp             TSEEEEEEEC----SSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHH
T ss_pred             CCEEEEEEec----cCCCCcHHHHHHHHHHHHHhhcCCEEEEEEECcCCCCCCCCCHHHHHHHHHh
Confidence            4456665554    599999976666644       246666666652       2 445555554

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=90.93  E-value=0.55  Score=34.14  Aligned_cols=36  Identities=8%  Similarity=0.217  Sum_probs=23.4

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHh-------cCCCeEEEEcC
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKS-------LNAPFETVNIL  126 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~-------~gv~y~~vdV~  126 (179)
                      ...|+|+...    .||+.|......|++       .++.+..|+++
T Consensus        32 gk~vll~f~a----~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d   74 (170)
T 2p5q_A           32 GKVLLIVNVA----SKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCN   74 (170)
T ss_dssp             TSEEEEEEEC----SSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCEEEEEEEe----ccCCccHHHHHHHHHHHHHhccCCEEEEEEECC
Confidence            4455665554    599999876666543       24666667765

>4gci_A Glutathione S-transferase; GST, enzyme function initiative, structural genomics; HET: GSH; 1.50A {Yersinia pestis} PDB: 4g9h_A*

Probab=90.68  E-value=0.17  Score=39.06  Aligned_cols=70  Identities=14%  Similarity=0.148  Sum_probs=47.3

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCC--CH-HHHHHHHHhcCCCCcceEeeCC-EEEeecHHHHHHHH
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE--NE-MLRQGLKEYSSWPTFPQLYIEG-EFFGGCDITVEAYK  165 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~--d~-~~~~~L~~~sg~~tvP~VfIdG-~~IGG~del~~l~~  165 (179)
                      +.+|..     |. +.+.+++=+|.++|++|+.+.|+-  .+ ....++.+++-..++|.+..|| ..|.....+.++..
T Consensus         4 mkLY~~-----p~-s~s~rvri~L~e~gl~~e~~~vd~~~~~~~~~~~~~~~nP~g~vP~L~~d~~~~l~eS~aI~~YL~   77 (211)
T 4gci_A            4 MKLFYK-----PG-ACSLSPHIVLREAGLDFSIERVDLVTKKTETGADYLSINPKGQVPALVLDDGSLLTEGVAIVQYLA   77 (211)
T ss_dssp             EEEEEC-----TT-STTHHHHHHHHHTTCCEEEEEEETTTTEETTSCBGGGTCTTCCSCEEECTTSCEEECHHHHHHHHH
T ss_pred             EEEEeC-----CC-CcHHHHHHHHHHhCCCCeEEEecCCCCcccCCHHHHHhCCCCCCCccccCCCCEEecCHHHHHHHH
Confidence            456765     22 236788889999999998876642  22 2223456666778999999877 55777777766643

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=90.67  E-value=0.22  Score=43.71  Aligned_cols=56  Identities=16%  Similarity=0.398  Sum_probs=36.1

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc---------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CCE
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL---------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGE  152 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~---------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG~  152 (179)
                      ...|+|+...    +||++|++....|.++         ++.+..+|.+.++..     . .+...+|.+++  +|+
T Consensus       376 ~k~vlv~F~a----~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~-----~-~~v~~~Pt~~~~~~G~  442 (504)
T 2b5e_A          376 KKDVLVLYYA----PWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVR-----G-VVIEGYPTIVLYPGGK  442 (504)
T ss_dssp             TCCEEEEEEC----TTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGCCCS-----S-CCCSSSSEEEEECCTT
T ss_pred             CCCEEEEEEC----CCChhHHHHhHHHHHHHHHhhccCCcEEEEEecCCccccc-----c-CCceecCeEEEEeCCc
Confidence            3456666665    7999999988877542         345666676554321     2 46778898744  664

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=90.26  E-value=0.77  Score=33.95  Aligned_cols=46  Identities=7%  Similarity=-0.038  Sum_probs=26.1

Q ss_pred             CcEEEEEe-eCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHH
Q 030327           88 NKVVLFMK-GTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKE  137 (179)
Q Consensus        88 ~~Vvlysk-~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~  137 (179)
                      ..++|+.. +    .||+.|.....-|.+.     ++.+.-|.++..+.+++.+++
T Consensus        48 k~vvl~f~~~----~~C~~C~~~~~~l~~~~~~~~~v~vv~Is~d~~~~~~~~~~~   99 (171)
T 2yzh_A           48 VVQVIITVPS----LDTPVCETETKKFNEIMAGMEGVDVTVVSMDLPFAQKRFCES   99 (171)
T ss_dssp             SEEEEEECSC----TTSHHHHHHHHHHHHHTTTCTTEEEEEEESSCHHHHHHHHHH
T ss_pred             CeEEEEEECC----CCCCchHHHHHHHHHHHHHcCCceEEEEeCCCHHHHHHHHHH
Confidence            44666554 3    4899998877777653     344444455443444444443

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=89.41  E-value=1.1  Score=33.71  Aligned_cols=36  Identities=11%  Similarity=-0.037  Sum_probs=22.1

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHh-------cCCCeEEEEcC
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKS-------LNAPFETVNIL  126 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~-------~gv~y~~vdV~  126 (179)
                      ...++|+...    .|||.|......|.+       .++.+.-++++
T Consensus        49 Gk~vlv~F~a----twC~~C~~~~~~l~~l~~~~~~~~v~vv~is~d   91 (185)
T 2gs3_A           49 GFVCIVTNVA----SQGGKTEVNYTQLVDLHARYAECGLRILAFPCN   91 (185)
T ss_dssp             TSEEEEEEEC----SSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCEEEEEEec----CCCCchHHHHHHHHHHHHHhhcCCeEEEEEECc
Confidence            3455555554    599999866665543       24566666654

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=89.33  E-value=0.85  Score=34.10  Aligned_cols=47  Identities=11%  Similarity=0.106  Sum_probs=27.5

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc-------CCCeEEEEcCC-------C-HHHHHHHHH
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNILE-------N-EMLRQGLKE  137 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-------gv~y~~vdV~~-------d-~~~~~~L~~  137 (179)
                      ...|+|+...    .||+.|......|.++       |+.+..|.++.       + +++++.+++
T Consensus        38 Gk~vlv~F~a----twC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~~~d~~~~~~~~~~~   99 (180)
T 3kij_A           38 GKVSLVVNVA----SDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARK   99 (180)
T ss_dssp             TSEEEEEEEC----SSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECCCSTTCCCSCHHHHHHHHHH
T ss_pred             CCEEEEEEEe----cCCCCcHHHHHHHHHHHHHhccCCeEEEEEECCccccCCCCCHHHHHHHHHH
Confidence            4456666655    5999999876666443       34444454432       3 455555555

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=89.29  E-value=0.25  Score=37.48  Aligned_cols=36  Identities=8%  Similarity=0.253  Sum_probs=23.0

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHh-------cCCCeEEEEcC
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKS-------LNAPFETVNIL  126 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~-------~gv~y~~vdV~  126 (179)
                      ...|+|+...    .||++|......|.+       .|+.+..|+++
T Consensus        46 Gk~vlv~F~a----twC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d   88 (187)
T 3dwv_A           46 GSPLLIYNVA----SKCGYTKGGYETATTLYNKYKSQGFTVLAFPSN   88 (187)
T ss_dssp             TSCEEEEEEC----CBCSCCTTHHHHHHHHHHHHGGGTCEEEEEEBC
T ss_pred             CCEEEEEEec----CCCCCcHHHHHHHHHHHHHhhhCCeEEEEEECc
Confidence            4456665554    599999876655533       35666666665

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=89.10  E-value=0.32  Score=36.65  Aligned_cols=41  Identities=10%  Similarity=0.017  Sum_probs=25.5

Q ss_pred             CCcEEEEEe-eCCCCCCCchHHHHHHHHHh-------cCCCeEEEEcCCCHHH
Q 030327           87 GNKVVLFMK-GTKDFPQCGFSHTVVQILKS-------LNAPFETVNILENEML  131 (179)
Q Consensus        87 ~~~Vvlysk-~t~~~p~Cp~C~~ak~lL~~-------~gv~y~~vdV~~d~~~  131 (179)
                      ...++|+.. .    .||+.|......|.+       .++.+..|+++..+..
T Consensus        31 gk~vvl~F~~a----~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~   79 (187)
T 1we0_A           31 GKWSIVVFYPA----DFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVH   79 (187)
T ss_dssp             SSEEEEEECSC----TTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHH
T ss_pred             CCCEEEEEECC----CCCcchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHH
Confidence            345666655 4    599999876655533       3667777777653333

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=89.06  E-value=0.98  Score=33.16  Aligned_cols=47  Identities=19%  Similarity=0.089  Sum_probs=25.6

Q ss_pred             CCcEEEEEe-eCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHH
Q 030327           87 GNKVVLFMK-GTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKE  137 (179)
Q Consensus        87 ~~~Vvlysk-~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~  137 (179)
                      ...++|+.. +    .||+.|......|+++     ++.+--|.++..+.+++.+++
T Consensus        42 gk~vvl~F~~~----~~c~~C~~~~~~l~~~~~~~~~v~vv~is~d~~~~~~~~~~~   94 (163)
T 1psq_A           42 GKKKVLSVVPS----IDTGICSTQTRRFNEELAGLDNTVVLTVSMDLPFAQKRWCGA   94 (163)
T ss_dssp             TSEEEEEECSC----TTSHHHHHHHHHHHHHTTTCTTEEEEEEESSCHHHHHHHHHH
T ss_pred             CCEEEEEEECC----CCCCccHHHHHHHHHHHHHcCCcEEEEEECCCHHHHHHHHHh
Confidence            345566554 2    3899998776666553     334444444443444444443

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=88.86  E-value=1.4  Score=31.86  Aligned_cols=47  Identities=9%  Similarity=-0.135  Sum_probs=27.8

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHh-------cCCCeEEEEcCCCHHHHHHHHH
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKS-------LNAPFETVNILENEMLRQGLKE  137 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~-------~gv~y~~vdV~~d~~~~~~L~~  137 (179)
                      ..++||...   ..||+.|......|.+       .|+.+.-|.++..+.+++.+.+
T Consensus        36 k~~vl~F~~---~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~   89 (163)
T 3gkn_A           36 HWLVIYFYP---KDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCAK   89 (163)
T ss_dssp             SCEEEEECS---CTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHH
T ss_pred             CcEEEEEeC---CCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHH
Confidence            345555542   0399999866555533       4677777777644555555443

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=88.37  E-value=0.69  Score=36.17  Aligned_cols=43  Identities=9%  Similarity=-0.048  Sum_probs=27.4

Q ss_pred             cCCcEEEEEe-eCCCCCCCchHHHHHHHHHh-------cCCCeEEEEcCCCHHHH
Q 030327           86 TGNKVVLFMK-GTKDFPQCGFSHTVVQILKS-------LNAPFETVNILENEMLR  132 (179)
Q Consensus        86 ~~~~Vvlysk-~t~~~p~Cp~C~~ak~lL~~-------~gv~y~~vdV~~d~~~~  132 (179)
                      +...++|+.. .    .||+.|......|.+       .++.+.-|+++..+..+
T Consensus        51 ~gk~vvl~F~pa----~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~  101 (213)
T 2i81_A           51 GKKYVLLYFYPL----DFTFVCPSEIIALDKALDAFHERNVELLGCSVDSKYTHL  101 (213)
T ss_dssp             TTCEEEEEECSC----TTSSHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHH
T ss_pred             CCCeEEEEEEcC----CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHH
Confidence            4455666665 4    599999987766644       35666667766433333

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=87.93  E-value=1.6  Score=31.52  Aligned_cols=36  Identities=11%  Similarity=0.147  Sum_probs=22.7

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHh-------cCCCeEEEEcC
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKS-------LNAPFETVNIL  126 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~-------~gv~y~~vdV~  126 (179)
                      ...++|+...    .||+.|......|.+       .++.+..++++
T Consensus        31 gk~vlv~f~a----~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d   73 (169)
T 2v1m_A           31 GHVCLIVNVA----CKCGATDKNYRQLQEMHTRLVGKGLRILAFPCN   73 (169)
T ss_dssp             TSEEEEEEEC----SSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCEEEEEEee----ccCCchHHHHHHHHHHHHHhhcCCeEEEEEECC
Confidence            3445555554    599999876665543       35666667665

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=87.79  E-value=1.3  Score=32.55  Aligned_cols=56  Identities=11%  Similarity=0.003  Sum_probs=30.3

Q ss_pred             CCcEEEEEe-eCCCCCCCchHHHHHHHHHhc----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE
Q 030327           87 GNKVVLFMK-GTKDFPQCGFSHTVVQILKSL----NAPFETVNILENEMLRQGLKEYSSWPTFPQL  147 (179)
Q Consensus        87 ~~~Vvlysk-~t~~~p~Cp~C~~ak~lL~~~----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V  147 (179)
                      ...++|+.. +    .||+.|..-...|.++    ++.+.-|..+..+.+++.+.+. |...+|.+
T Consensus        46 Gk~vvl~f~~~----~~c~~C~~~~~~l~~~~~~~~~~vv~is~d~~~~~~~~~~~~-~~~~~~~l  106 (166)
T 3p7x_A           46 GKKKLISVVPS----IDTGVCDQQTRKFNSDASKEEGIVLTISADLPFAQKRWCASA-GLDNVITL  106 (166)
T ss_dssp             TSCEEEEECSC----TTSHHHHHHHHHHHHHSCTTTSEEEEEESSCHHHHHHHHHHH-TCSSCEEE
T ss_pred             CCcEEEEEECC----CCCCccHHHHHHHHHHhhcCCCEEEEEECCCHHHHHHHHHHc-CCCceEEc
Confidence            334555444 3    4899998777666553    4555555555444454444433 44344433

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=87.77  E-value=0.43  Score=34.80  Aligned_cols=36  Identities=22%  Similarity=0.217  Sum_probs=23.7

Q ss_pred             CCcEEEEEeeCCCCCCCch-HHHHHHHHHhc----------CCCeEEEEcC
Q 030327           87 GNKVVLFMKGTKDFPQCGF-SHTVVQILKSL----------NAPFETVNIL  126 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~-C~~ak~lL~~~----------gv~y~~vdV~  126 (179)
                      ...++|+...    .||+. |......|.+.          ++.+..|+++
T Consensus        35 gk~vll~f~~----~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d   81 (172)
T 2k6v_A           35 DKVVLLFFGF----TRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVD   81 (172)
T ss_dssp             TSEEEEEEEC----TTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESC
T ss_pred             CCEEEEEEEC----CCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEEC
Confidence            4456666665    59996 99877777553          3555666665

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=87.26  E-value=0.8  Score=36.23  Aligned_cols=47  Identities=6%  Similarity=-0.158  Sum_probs=28.5

Q ss_pred             cCCcEEEEEe-eCCCCCCCchHHHHHHHHHh-------cCCCeEEEEcCCCHHHHHHHH
Q 030327           86 TGNKVVLFMK-GTKDFPQCGFSHTVVQILKS-------LNAPFETVNILENEMLRQGLK  136 (179)
Q Consensus        86 ~~~~Vvlysk-~t~~~p~Cp~C~~ak~lL~~-------~gv~y~~vdV~~d~~~~~~L~  136 (179)
                      +...|+||.. .    .||+.|......|.+       .++.+.-|.++....+++.++
T Consensus        55 ~Gk~vvl~F~pa----twCp~C~~e~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~  109 (221)
T 2c0d_A           55 GQKYCCLLFYPL----NYTFVCPTEIIEFNKHIKDFENKNVELLGISVDSVYSHLAWKN  109 (221)
T ss_dssp             TTCEEEEEECCC----CTTTCCHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHH
T ss_pred             CCCeEEEEEEcC----CCCCchHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH
Confidence            4455666665 4    599999876665544       356666666654444544444

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=86.69  E-value=1.7  Score=32.57  Aligned_cols=47  Identities=15%  Similarity=-0.055  Sum_probs=27.2

Q ss_pred             CCcEEEEEe-eCCCCCCCchHHHHHHHHHh-------cCCCeEEEEcCCCHHHHHHHHH
Q 030327           87 GNKVVLFMK-GTKDFPQCGFSHTVVQILKS-------LNAPFETVNILENEMLRQGLKE  137 (179)
Q Consensus        87 ~~~Vvlysk-~t~~~p~Cp~C~~ak~lL~~-------~gv~y~~vdV~~d~~~~~~L~~  137 (179)
                      ...|+||.. .    .||+.|.....-|.+       .|+.+.-|.++.....++.+++
T Consensus        51 Gk~vvl~f~~~----~~c~~C~~el~~l~~l~~~~~~~~~~vv~Vs~D~~~~~~~~~~~  105 (179)
T 3ixr_A           51 NQWLVLYFYPK----DNTPGSSTEGLEFNLLLPQFEQINATVLGVSRDSVKSHDSFCAK  105 (179)
T ss_dssp             TSEEEEEECSC----TTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESCCHHHHHHHHHH
T ss_pred             CCCEEEEEEcC----CCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH
Confidence            334656554 3    599999865555533       3555666666554555555444

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=86.60  E-value=1.4  Score=34.46  Aligned_cols=45  Identities=16%  Similarity=-0.011  Sum_probs=27.8

Q ss_pred             CCcEEEEEe-eCCCCCCCchHHHHHHHHHhc-------CCCeEEEEcCCCHHHHHHH
Q 030327           87 GNKVVLFMK-GTKDFPQCGFSHTVVQILKSL-------NAPFETVNILENEMLRQGL  135 (179)
Q Consensus        87 ~~~Vvlysk-~t~~~p~Cp~C~~ak~lL~~~-------gv~y~~vdV~~d~~~~~~L  135 (179)
                      ...|+|+.. +    .||+.|......|.++       |+.+..|+++...+.++.+
T Consensus        69 Gk~vll~F~a~----~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~  121 (222)
T 3ztl_A           69 GKYVVLFFYPA----DFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYSHLAWD  121 (222)
T ss_dssp             TSEEEEEECSC----SSCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHH
T ss_pred             CCeEEEEEECC----CCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHH
Confidence            445566555 3    4999999877766543       5666677776544443333

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=86.34  E-value=1.5  Score=33.21  Aligned_cols=48  Identities=15%  Similarity=-0.024  Sum_probs=27.5

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHh-------cCCCeEEEEcCCCHHHHHHHHH
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKS-------LNAPFETVNILENEMLRQGLKE  137 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~-------~gv~y~~vdV~~d~~~~~~L~~  137 (179)
                      ...|+|+...   ..||+.|......|.+       .|+.+.-|.++....+++.+++
T Consensus        30 Gk~vvl~F~~---~~~Cp~C~~e~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~   84 (186)
T 1n8j_A           30 GRWSVFFFYP---ADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSS   84 (186)
T ss_dssp             TSEEEEEECS---CTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHH
T ss_pred             CCeEEEEEEC---CCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHH
Confidence            3456666541   1399999866555533       3666666666544445554444

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=86.26  E-value=0.31  Score=35.81  Aligned_cols=37  Identities=8%  Similarity=0.060  Sum_probs=23.9

Q ss_pred             CCcEEEEEeeCCCCCC-CchHHHHHHHHHh-----cCCCeEEEEcCC
Q 030327           87 GNKVVLFMKGTKDFPQ-CGFSHTVVQILKS-----LNAPFETVNILE  127 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~-Cp~C~~ak~lL~~-----~gv~y~~vdV~~  127 (179)
                      ...++|+...    .| |+.|......|++     .++.+..|+++.
T Consensus        44 gk~~vl~F~~----~~~C~~C~~~~~~l~~l~~~~~~~~vv~is~d~   86 (167)
T 2jsy_A           44 GKVTIISVIP----SIDTGVCDAQTRRFNEEAAKLGDVNVYTISADL   86 (167)
T ss_dssp             TSCEEEEECS----CSTTSHHHHTHHHHHHHHHHHSSCEEEEEECSS
T ss_pred             CCeEEEEEec----CCCCCchHHHHHHHHHHHHHcCCCEEEEEECCC
Confidence            3455665554    47 9999977766644     366677777653

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=86.17  E-value=1.2  Score=34.62  Aligned_cols=36  Identities=6%  Similarity=-0.092  Sum_probs=22.5

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHh-------cCCCeEEEEcC
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKS-------LNAPFETVNIL  126 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~-------~gv~y~~vdV~  126 (179)
                      ...|+|+...    .|||+|......|++       .|+.+.-|+++
T Consensus        47 Gk~vlv~Fwa----twC~~C~~e~p~l~~l~~~~~~~g~~vv~v~~d   89 (208)
T 2f8a_A           47 GKVLLIENVA----SLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCN   89 (208)
T ss_dssp             TSEEEEEEEC----SSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCEEEEEEEC----CCCccHHHHHHHHHHHHHHccCCCeEEEEEECC
Confidence            4456666554    599999986555543       24555566664

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=85.76  E-value=0.67  Score=35.05  Aligned_cols=40  Identities=10%  Similarity=-0.022  Sum_probs=25.6

Q ss_pred             cCCcEEEEEe-eCCCCCCCchHHHHHHHHHh-------cCCCeEEEEcCCCH
Q 030327           86 TGNKVVLFMK-GTKDFPQCGFSHTVVQILKS-------LNAPFETVNILENE  129 (179)
Q Consensus        86 ~~~~Vvlysk-~t~~~p~Cp~C~~ak~lL~~-------~gv~y~~vdV~~d~  129 (179)
                      +...++|+.. .    .||+.|......|.+       .++.+..|+++...
T Consensus        30 ~gk~vvl~F~~a----~~C~~C~~~~~~l~~~~~~~~~~~v~vv~Is~d~~~   77 (192)
T 2h01_A           30 GKKYVLLYFYPL----DFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKF   77 (192)
T ss_dssp             TTCEEEEEECSC----SSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHH
T ss_pred             CCCeEEEEEECC----CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeCCHH
Confidence            4456666665 4    599999876665543       35666677776433

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=85.18  E-value=1  Score=35.16  Aligned_cols=36  Identities=11%  Similarity=0.176  Sum_probs=27.2

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHH---Hhc------CCCeEEEEcCCC
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQIL---KSL------NAPFETVNILEN  128 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL---~~~------gv~y~~vdV~~d  128 (179)
                      ..|+-|..     +|||+|.+....|   +++      ++.|..++++.+
T Consensus       115 ~~vveFf~-----~~C~~C~~~~p~~~~~~~l~~~~~~~v~~~~~~v~~~  159 (197)
T 1un2_A          115 PQVLEFFS-----FFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNFM  159 (197)
T ss_dssp             CSEEEEEC-----TTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEECSSS
T ss_pred             CEEEEEEC-----CCChhHHHhCcccccHHHHHHHCCCCCEEEEeccCcC
Confidence            45666666     5999999998776   442      577999999764

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=85.10  E-value=1.7  Score=33.81  Aligned_cols=46  Identities=11%  Similarity=0.034  Sum_probs=27.4

Q ss_pred             CCcEEEEEe-eCCCCCCCchHHHHHHHHHh-------cCCCeEEEEcCCCHHHHHHHH
Q 030327           87 GNKVVLFMK-GTKDFPQCGFSHTVVQILKS-------LNAPFETVNILENEMLRQGLK  136 (179)
Q Consensus        87 ~~~Vvlysk-~t~~~p~Cp~C~~ak~lL~~-------~gv~y~~vdV~~d~~~~~~L~  136 (179)
                      ...++||.. .    .||+.|.....-|.+       .++.+.-|.++..+.+++.++
T Consensus        48 Gk~vvl~F~pa----t~C~~C~~e~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~  101 (211)
T 2pn8_A           48 GKYLVFFFYPL----DFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWIN  101 (211)
T ss_dssp             TSEEEEEECSC----TTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHT
T ss_pred             CCeEEEEEECC----CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHH
Confidence            345666665 4    599999876666644       355666666654444444443

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=85.02  E-value=0.72  Score=35.06  Aligned_cols=42  Identities=17%  Similarity=0.057  Sum_probs=26.0

Q ss_pred             cCCcEEEEEe-eCCCCCCCchHHHHHHHHHh-------cCCCeEEEEcCCCHHH
Q 030327           86 TGNKVVLFMK-GTKDFPQCGFSHTVVQILKS-------LNAPFETVNILENEML  131 (179)
Q Consensus        86 ~~~~Vvlysk-~t~~~p~Cp~C~~ak~lL~~-------~gv~y~~vdV~~d~~~  131 (179)
                      +...++|+.. .    .||++|......|.+       .++.+..|+++..+.+
T Consensus        32 ~gk~vvl~F~~a----~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~   81 (198)
T 1zof_A           32 GKNGVILFFWPK----DFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVH   81 (198)
T ss_dssp             CSSEEEEEECSC----TTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHH
T ss_pred             CCCcEEEEEECC----CCCCchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHH
Confidence            3455666665 4    599999866665543       3566777777643333

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=84.36  E-value=1.7  Score=46.64  Aligned_cols=71  Identities=10%  Similarity=0.062  Sum_probs=53.9

Q ss_pred             EEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC--HH-HHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHc
Q 030327           91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN--EM-LRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKN  166 (179)
Q Consensus        91 vlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d--~~-~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~  166 (179)
                      ++|..     +.+++|.+++-+|...|++|+.+.++-.  +. ...++.+.....++|.+..||..+.....+.++..+
T Consensus         3 kLyY~-----~~s~~a~kVrl~L~e~Gl~ye~~~vd~~~~e~~~~~e~l~iNP~GkVPvLvDdg~vL~ES~AIl~YLa~   76 (2695)
T 4akg_A            3 ILGYW-----KIKGLVQPTRLLLEYLEEKYEEHLYERDEGDKWRNKKFELGLEFPNLPYYIDGDVKLTQSMAIIRYIAD   76 (2695)
T ss_dssp             EEEEE-----SSSGGGHHHHHHHHHTTCCCEEEEECTTCHHHHHHHTTSSCCSSCCSSEEESSSCEEESHHHHHHHHHH
T ss_pred             EEEEc-----CCChhHHHHHHHHHHcCCCcEEEEeCCCcccccCCHhHHhhCCCCCCCEEEECCEEEECHHHHHHHHHH
Confidence            45666     3899999999999999999999888643  22 233444455678999999888888888877776543

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=84.29  E-value=2.7  Score=30.38  Aligned_cols=41  Identities=10%  Similarity=-0.047  Sum_probs=23.0

Q ss_pred             cEEEEEe-eCCCCCCCchHHHHHHHHHh-------cCCCeEEEEcCCCHHHHHH
Q 030327           89 KVVLFMK-GTKDFPQCGFSHTVVQILKS-------LNAPFETVNILENEMLRQG  134 (179)
Q Consensus        89 ~Vvlysk-~t~~~p~Cp~C~~ak~lL~~-------~gv~y~~vdV~~d~~~~~~  134 (179)
                      .|+||.. .    .||+.|......|.+       .+ .+.-|.++..+.+++.
T Consensus        37 ~vvl~f~~~----~~c~~C~~~~~~l~~~~~~~~~~~-~vv~is~d~~~~~~~~   85 (159)
T 2a4v_A           37 VVVFFVYPR----ASTPGSTRQASGFRDNYQELKEYA-AVFGLSADSVTSQKKF   85 (159)
T ss_dssp             EEEEEECSS----SSSHHHHHHHHHHHHHHHHHTTTC-EEEEEESCCHHHHHHH
T ss_pred             eEEEEEcCC----CCCCCHHHHHHHHHHHHHHHHhCC-cEEEEeCCCHHHHHHH
Confidence            4666653 3    499999876655543       24 4555555543334433

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=84.08  E-value=0.47  Score=35.52  Aligned_cols=37  Identities=19%  Similarity=0.082  Sum_probs=24.1

Q ss_pred             CCcEEEEEeeCCCCCC-CchHHHHHHHHHh----cCCCeEEEEcCC
Q 030327           87 GNKVVLFMKGTKDFPQ-CGFSHTVVQILKS----LNAPFETVNILE  127 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~-Cp~C~~ak~lL~~----~gv~y~~vdV~~  127 (179)
                      ...++|+...    .| |+.|......|.+    .++.+..|+++.
T Consensus        44 gk~vvl~F~~----t~~C~~C~~~~~~l~~l~~~~~v~vv~Is~D~   85 (175)
T 1xvq_A           44 GKSVLLNIFP----SVDTPVCATSVRTFDERAAASGATVLCVSKDL   85 (175)
T ss_dssp             TSCEEEEECS----CCCSSCCCHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCEEEEEEEe----CCCCchHHHHHHHHHHHHhhcCCEEEEEECCC
Confidence            3445665553    36 9999877666644    467777777754

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=84.08  E-value=1.2  Score=34.92  Aligned_cols=40  Identities=18%  Similarity=0.120  Sum_probs=25.1

Q ss_pred             CCcEEEEEe-eCCCCCCCchHHHHHHHHHh-------cCCCeEEEEcCCCHH
Q 030327           87 GNKVVLFMK-GTKDFPQCGFSHTVVQILKS-------LNAPFETVNILENEM  130 (179)
Q Consensus        87 ~~~Vvlysk-~t~~~p~Cp~C~~ak~lL~~-------~gv~y~~vdV~~d~~  130 (179)
                      ...++|+.. .    .||++|......|.+       .++.+..|+++....
T Consensus        56 Gk~vll~F~pa----~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~  103 (220)
T 1zye_A           56 GKYLVLFFYPL----DFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFS  103 (220)
T ss_dssp             TSEEEEEECSC----TTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHH
T ss_pred             CCeEEEEEECC----CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHH
Confidence            345666665 4    599999976665533       366677777664333

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=83.78  E-value=2.4  Score=32.38  Aligned_cols=37  Identities=11%  Similarity=0.063  Sum_probs=24.6

Q ss_pred             CCcEEEEEeeCCCCCCCch-HHHHHHHHHh----c------CCCeEEEEcCC
Q 030327           87 GNKVVLFMKGTKDFPQCGF-SHTVVQILKS----L------NAPFETVNILE  127 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~-C~~ak~lL~~----~------gv~y~~vdV~~  127 (179)
                      ...++|+...    .||++ |......|.+    +      ++.+..|+++.
T Consensus        41 Gk~vlv~F~a----t~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~   88 (200)
T 2b7k_A           41 GKFSIIYFGF----SNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDP   88 (200)
T ss_dssp             TSCEEEEEEC----TTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCT
T ss_pred             CCEEEEEEEC----CCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCC
Confidence            4456666655    59997 9977666544    2      56777777763

>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}

Probab=83.23  E-value=7.9  Score=29.87  Aligned_cols=64  Identities=13%  Similarity=0.077  Sum_probs=36.9

Q ss_pred             HHhhhcCCcEEEEEeeCCCCCCCchHHH--HH------HHHHhcCC-CeEEEEcCCCHHHHHHHHHhcCCC-CcceEe
Q 030327           81 LDKVVTGNKVVLFMKGTKDFPQCGFSHT--VV------QILKSLNA-PFETVNILENEMLRQGLKEYSSWP-TFPQLY  148 (179)
Q Consensus        81 l~~li~~~~Vvlysk~t~~~p~Cp~C~~--ak------~lL~~~gv-~y~~vdV~~d~~~~~~L~~~sg~~-tvP~Vf  148 (179)
                      +.++++..+|+||.-   +..|||.|..  +.      +-|++.|+ .+.-+.++. +...+.+.+..+.. .+|.+-
T Consensus        41 Lsd~~~Gk~vVL~fy---P~~~tp~Ct~~El~~f~~~~~ef~~~g~d~VigIS~D~-~~~~~~f~~~~~l~~~f~lLs  114 (176)
T 4f82_A           41 VRDQVAGKRVVIFGL---PGAFTPTCSAQHVPGYVEHAEQLRAAGIDEIWCVSVND-AFVMGAWGRDLHTAGKVRMMA  114 (176)
T ss_dssp             HHHHHTTCEEEEEEE---SCTTCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSC-HHHHHHHHHHTTCTTTSEEEE
T ss_pred             HHHHhCCCeEEEEEE---cCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEEEeCCC-HHHHHHHHHHhCCCCCceEEE
Confidence            556656667777655   2358999986  22      22355677 666677754 44444444444443 466553

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=83.16  E-value=1.5  Score=35.51  Aligned_cols=81  Identities=17%  Similarity=0.262  Sum_probs=43.4

Q ss_pred             HHhhhcCCc-EEEEEeeCCCCCCCchHHHHHHHHHhc----CCCeEEEEcCC-----CHHHHHHHHHhcCCC--CcceE-
Q 030327           81 LDKVVTGNK-VVLFMKGTKDFPQCGFSHTVVQILKSL----NAPFETVNILE-----NEMLRQGLKEYSSWP--TFPQL-  147 (179)
Q Consensus        81 l~~li~~~~-Vvlysk~t~~~p~Cp~C~~ak~lL~~~----gv~y~~vdV~~-----d~~~~~~L~~~sg~~--tvP~V-  147 (179)
                      +++++..++ |+|+...  ..|||+......++-+.+    ++.+..||+++     +++    +.+..|..  .+|.+ 
T Consensus        15 F~~~i~~~~~vlV~FyA--~~pWCgl~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~~----l~~~~~V~~~~~PTl~   88 (240)
T 2qc7_A           15 FYKVIPKSKFVLVKFDT--QYPYGEKQDEFKRLAENSASSDDLLVAEVGISDYGDKLNME----LSEKYKLDKESYPVFY   88 (240)
T ss_dssp             HHHHGGGCSEEEEEECC--SSCCSHHHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCSHH----HHHHTTCCGGGCSEEE
T ss_pred             HHHHHcCCCCEEEEEeC--CCCCCcchHHHHHHHHHhcCCCCeEEEEEeCCcccchhhHH----HHHHcCCCCCCCCEEE
Confidence            444555444 4444331  126898444444444443    35677888764     343    44455777  78887 


Q ss_pred             -eeCCE---EE---ee--cHHHHHHHHcc
Q 030327          148 -YIEGE---FF---GG--CDITVEAYKNG  167 (179)
Q Consensus       148 -fIdG~---~I---GG--~del~~l~~~G  167 (179)
                       |.+|+   ..   |+  .+++.++.++.
T Consensus        89 ~f~~G~~~~~~~y~G~~~~~~L~~fi~~~  117 (240)
T 2qc7_A           89 LFRDGDFENPVPYTGAVKVGAIQRWLKGQ  117 (240)
T ss_dssp             EEETTCSSCCEECCSCSCHHHHHHHHHHT
T ss_pred             EEeCCCcCcceeecCCCCHHHHHHHHHHh
Confidence             45776   12   43  34566655543

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=82.71  E-value=1.1  Score=34.45  Aligned_cols=33  Identities=15%  Similarity=0.258  Sum_probs=22.7

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhc----C--CCeEEEEcC
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSL----N--APFETVNIL  126 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~----g--v~y~~vdV~  126 (179)
                      .|+.|+.     ++||+|.+....|.++    +  +.|..+++.
T Consensus        27 ~vv~f~d-----~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~p~~   65 (193)
T 3hz8_A           27 EVLEFFG-----YFCPHCAHLEPVLSKHAKSFKDDMYLRTEHVV   65 (193)
T ss_dssp             EEEEEEC-----TTCHHHHHHHHHHHHHHTTCCTTEEEEEEECC
T ss_pred             EEEEEEC-----CCChhHHHHHHHHHHHHHHCCCCeEEEEecCC
Confidence            3666666     6999999988877654    2  345666653

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=82.59  E-value=4.6  Score=31.77  Aligned_cols=49  Identities=12%  Similarity=-0.014  Sum_probs=27.1

Q ss_pred             HHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHH-------hcCCCeEEEEcCCCHHHH
Q 030327           81 LDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILK-------SLNAPFETVNILENEMLR  132 (179)
Q Consensus        81 l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~-------~~gv~y~~vdV~~d~~~~  132 (179)
                      +.+......++||.-   ++.|||.|..-..-|.       +.|+.+.-+.++.....+
T Consensus        25 l~d~~Gk~~vvL~~~---~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~IS~D~~~~~~   80 (224)
T 1prx_A           25 FHDFLGDSWGILFSH---PRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHL   80 (224)
T ss_dssp             HHHHHTTSEEEEEEE---SCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHH
T ss_pred             HHHHcCCCeEEEEEE---CCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHH
Confidence            344444435666653   1259999986555443       346666666666544333

>2g2q_A Glutaredoxin-2; thioredoxin-fold, oxidoreductase, poxvirus; 2.50A {Vaccinia virus}

Probab=82.13  E-value=1.8  Score=32.12  Aligned_cols=32  Identities=22%  Similarity=0.600  Sum_probs=27.3

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEE
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVN  124 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vd  124 (179)
                      ..+++|+|     |.|+-|+.+.++|.++.-+|+.+-
T Consensus         3 ~tLILfGK-----P~C~vCe~~s~~l~~ledeY~ilr   34 (124)
T 2g2q_A            3 NVLIIFGK-----PYCSICENVSDAVEELKSEYDILH   34 (124)
T ss_dssp             EEEEEEEC-----TTCHHHHHHHHHHHTTTTTEEEEE
T ss_pred             ceEEEeCC-----CccHHHHHHHHHHHHhhccccEEE
Confidence            46899999     799999999999999888876543

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=81.98  E-value=3.9  Score=29.59  Aligned_cols=36  Identities=14%  Similarity=0.121  Sum_probs=19.4

Q ss_pred             CCcEEEEEeeCCCCCCCc-hHHHHHHH-------HHhcC--CCeEEEEcC
Q 030327           87 GNKVVLFMKGTKDFPQCG-FSHTVVQI-------LKSLN--APFETVNIL  126 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp-~C~~ak~l-------L~~~g--v~y~~vdV~  126 (179)
                      ...++|+...    .||+ .|......       +.+.+  +.+..|+++
T Consensus        33 gk~vll~f~~----~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d   78 (174)
T 1xzo_A           33 GEVWLADFIF----TNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVD   78 (174)
T ss_dssp             TCCEEEEEEC----SCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred             CCEEEEEEEc----CCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeC
Confidence            3445555544    4888 78533332       23334  666666665

>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold, reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter pylori}

Probab=81.47  E-value=0.9  Score=38.01  Aligned_cols=20  Identities=15%  Similarity=0.418  Sum_probs=16.1

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHH
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILK  114 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~  114 (179)
                      |++|+-     |.||||++.-+.|+
T Consensus       151 I~vFtD-----p~CPYCkkl~~~l~  170 (273)
T 3tdg_A          151 LYIVSD-----PMCPHCQKELTKLR  170 (273)
T ss_dssp             EEEEEC-----TTCHHHHHHHHTHH
T ss_pred             EEEEEC-----cCChhHHHHHHHHH
Confidence            677776     79999999877665

>2imf_A HCCA isomerase, 2-hydroxychromene-2-carboxylate isomerase; glutathione, KGST, kappa GST, transferase; HET: GSH TOM CXS; 1.30A {Pseudomonas putida} PDB: 2ime_A* 2imd_A*

Probab=81.29  E-value=0.84  Score=35.08  Aligned_cols=57  Identities=11%  Similarity=0.087  Sum_probs=37.0

Q ss_pred             HHHHHHHHhcCCCeEEEE-cCCCHHHHHHHH------HhcCCCCcceEeeCCEEEeecHHHHHH
Q 030327          107 HTVVQILKSLNAPFETVN-ILENEMLRQGLK------EYSSWPTFPQLYIEGEFFGGCDITVEA  163 (179)
Q Consensus       107 ~~ak~lL~~~gv~y~~vd-V~~d~~~~~~L~------~~sg~~tvP~VfIdG~~IGG~del~~l  163 (179)
                      ..+.+++.+.|++-..+. ...+++.++.+.      ...|...+|.++|||+.+.|.+.+..+
T Consensus       124 ~~L~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~Gv~G~Ptfvi~g~~~~G~~~~~~l  187 (203)
T 2imf_A          124 SLPALVSEKLGWDRSAFEHFLSSNAATERYDEQTHAAIERKVFGVPTMFLGDEMWWGNDRLFML  187 (203)
T ss_dssp             THHHHHHHHHTCCHHHHHHHHHSHHHHHHHHHHHHHHHHTTCCSSSEEEETTEEEESGGGHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHhcCHHHHHHHHHHHHHHHHCCCCcCCEEEECCEEEECCCCHHHH
Confidence            356778888888753322 122344333332      224889999999999999998776544

>3fz5_A Possible 2-hydroxychromene-2-carboxylate isomeras; 2-hydroxychromene-2-carboxylate ISO structural genomics, PSI-2; HET: MSE GSH PGE; 2.40A {Rhodobacter sphaeroides 2}

Probab=81.13  E-value=1.1  Score=34.73  Aligned_cols=57  Identities=14%  Similarity=0.152  Sum_probs=38.7

Q ss_pred             HHHHHHHHHhcCCCeEEE-EcCCCHHHHHHHHH------hcCCCCcceEeeCCEEEeecHHHHH
Q 030327          106 SHTVVQILKSLNAPFETV-NILENEMLRQGLKE------YSSWPTFPQLYIEGEFFGGCDITVE  162 (179)
Q Consensus       106 C~~ak~lL~~~gv~y~~v-dV~~d~~~~~~L~~------~sg~~tvP~VfIdG~~IGG~del~~  162 (179)
                      =..+.+++.+.|++-+.+ ....+++.++.+++      ..|...+|.++|||+.+-|.+.+..
T Consensus       129 ~~~L~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~Gv~GvPtfvv~g~~~~G~~~~~~  192 (202)
T 3fz5_A          129 PEAVSRLGPEVGLEPEALLAGIADPALKETVRKIGEDAVARGIFGSPFFLVDDEPFWGWDRMEM  192 (202)
T ss_dssp             HHHHHTTHHHHTCCHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCSSSEEEETTEEEESGGGHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHhcCHHHHHHHHHHHHHHHHCCCCcCCEEEECCEEEecCCCHHH
Confidence            356777888889875433 23345555444433      2388899999999999999876543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	179
d1wika_	109	c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (M	3e-35
d1fova_	82	c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)	2e-21
d1ktea_	105	c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)	2e-21
d1t1va_	93	c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [Tax	4e-18
d1nm3a1	74	c.47.1.1 (A:166-239) C-terminal, Grx domain of Hyb	1e-16
d1abaa_	87	c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)	3e-16
d1egoa_	85	c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)	3e-15
d1r7ha_	74	c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Cory	4e-12
d1h75a_	76	c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Esch	1e-10

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 109

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  117 bits (294), Expect = 3e-35
 Identities = 46/101 (45%), Positives = 63/101 (62%)

Query: 76  ELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGL 135
              S L  +     V+LFMKG K   +CGFS  +++IL S    +ET +ILE+E +RQGL
Sbjct: 3   SGSSGLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGL 62

Query: 136 KEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKA 176
           K +S+WPT+PQLY+ G+  GG DI  E   NGEL  +L+  
Sbjct: 63  KTFSNWPTYPQLYVRGDLVGGLDIVKELKDNGELLPILKGE 103

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]} Length = 82

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

 Score = 81.6 bits (201), Expect = 2e-21
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 5/86 (5%)

Query: 89  KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLY 148
            V ++ K       C + H    +L S    F+ + I  N   R+ + + S   T PQ++
Sbjct: 2   NVEIYTK-----ETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIF 56

Query: 149 IEGEFFGGCDITVEAYKNGELQELLE 174
           I+ +  GG D        G L  LL+
Sbjct: 57  IDAQHIGGYDDLYALDARGGLDPLLK 82

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 81.7 bits (201), Expect = 2e-21
 Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 11/105 (10%)

Query: 78  KSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAP-----FETVNILENEMLR 132
           ++ ++  +   KVV+F+K     P C F     ++L  L        F  +    +    
Sbjct: 2   QAFVNSKIQPGKVVVFIK-----PTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEI 56

Query: 133 QG-LKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGELQELLEKA 176
           Q  L++ +   T P+++I  E  GGC      +K GEL   L++ 
Sbjct: 57  QDYLQQLTGARTVPRVFIGKECIGGCTDLESMHKRGELLTRLQQV 101

>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 93

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: SH3BGR (SH3-binding, glutamic acid-rich protein-like)
domain: SH3BGRL3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.0 bits (179), Expect = 4e-18
 Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 13/97 (13%)

Query: 88  NKVVLFMKGTKDFPQCGFSHT------VVQILKSLNAPFETVNILENEMLRQGLKEYSSW 141
           + + ++          G          V +IL      ++ V+I ++  LR  ++  +  
Sbjct: 2   SGLRVYSTSV-----TGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGN 56

Query: 142 P--TFPQLYIEGEFFGGCDITVEAYKNGELQELLEKA 176
           P  T PQ+     + G  ++ VEA +   LQE L+ A
Sbjct: 57  PKATPPQIVNGNHYCGDYELFVEAVEQDTLQEFLKLA 93

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} Length = 74

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

 Score = 68.4 bits (167), Expect = 1e-16
 Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 6/75 (8%)

Query: 88  NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQL 147
             + +F K     P C F     Q+L      FE + +  +      ++  S   T PQ+
Sbjct: 5   ESISIFTK-----PGCPFCAKAKQLLHDKGLSFEEIILGHDAT-IVSVRAVSGRTTVPQV 58

Query: 148 YIEGEFFGGCDITVE 162
           +I G+  GG D   +
Sbjct: 59  FIGGKHIGGSDDLEK 73

>d1abaa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Bacteriophage T4 [TaxId: 10665]} Length = 87

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Bacteriophage T4 [TaxId: 10665]

 Score = 67.8 bits (165), Expect = 3e-16
 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 11/78 (14%)

Query: 99  DFPQCGFSHTVVQILKSLNAPFETVNILE----------NEMLRQGLKEYSSWPTFPQLY 148
           +  +CG      ++L     PFE +NI+            E+L +  ++     T PQ++
Sbjct: 10  NIHKCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVF 69

Query: 149 I-EGEFFGGCDITVEAYK 165
             +G   GG D   E +K
Sbjct: 70  APDGSHIGGFDQLREYFK 87

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

 Score = 65.4 bits (159), Expect = 3e-15
 Identities = 14/96 (14%), Positives = 39/96 (40%), Gaps = 21/96 (21%)

Query: 89  KVVLFMKGTKDFPQCGFSHTVVQILKSLNAP-----FETVNILENEMLRQGLKEYSSWP- 142
           + V+F +       C +      + + L+       ++ V+I    + ++ L++ +  P 
Sbjct: 2   QTVIFGR-----SGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPV 56

Query: 143 -TFPQLYIEGEFFGGCDITVEAYKNGELQELLEKAL 177
            T PQ++++ +  GG           +    +++ L
Sbjct: 57  ETVPQIFVDQQHIGGYT---------DFAAWVKENL 83

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]} Length = 74

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

 Score = 57.0 bits (137), Expect = 4e-12
 Identities = 14/85 (16%), Positives = 32/85 (37%), Gaps = 13/85 (15%)

Query: 89  KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLY 148
            + L+ K     P C       + L      + TV+I  ++  R  +     +   P + 
Sbjct: 2   SITLYTK-----PACVQCTATKKALDRAGLAYNTVDISLDDEARDYVMALG-YVQAPVVE 55

Query: 149 IEGEFFGGCDITVEAYKNGELQELL 173
           ++GE + G       ++   +++L 
Sbjct: 56  VDGEHWSG-------FRPERIKQLQ 73

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]} Length = 76

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

 Score = 53.1 bits (127), Expect = 1e-10
 Identities = 8/70 (11%), Positives = 24/70 (34%), Gaps = 6/70 (8%)

Query: 89  KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLY 148
           ++ ++ +       C   H   + +++    FE +N+       + L+    +   P + 
Sbjct: 2   RITIYTR-----NDCVQCHATKRAMENRGFDFEMINVDRVPEAAEALR-AQGFRQLPVVI 55

Query: 149 IEGEFFGGCD 158
                + G  
Sbjct: 56  AGDLSWSGFR 65

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	179
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	99.97
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	99.94
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	99.94
d1t1va_	93	SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}	99.87
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	99.85
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	99.8
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	99.79
d1abaa_	87	Glutaredoxin (Grx, thioltransferase) {Bacteriophag	99.78
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	99.78
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	99.17
d1wjka_	100	Thioredoxin-like structure containing protein C330	99.17
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	98.99
d1g7oa2	75	Glutaredoxin 2 {Escherichia coli [TaxId: 562]}	98.91
d1k0ma2	86	Chloride intracellular channel 1 (clic1) {Human (H	98.62
d1oyja2	84	Class tau GST {Rice (Oryza sativa) [TaxId: 4530]}	98.56
d1v2aa2	83	Class delta GST {Mosquito (Anopheles dirus b), iso	98.55
d1gwca2	83	Class tau GST {Aegilops tauschii, also known as Tr	98.53
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	98.53
d1eema2	98	Class omega GST {Human (Homo sapiens) [TaxId: 9606	98.5
d1e6ba2	80	Class zeta GST {Mouse-ear cress (Arabidopsis thali	98.49
d1z9ha2	113	Microsomal prostaglandin E synthase-2 {Crab-eating	98.48
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	98.48
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	98.41
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	98.41
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	98.38
d1k0da2	92	Yeast prion protein ure2p, nitrogen regulation fra	98.37
d1aw9a2	81	Class phi GST {Maize (Zea mays), type III [TaxId:	98.36
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	98.28
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	98.26
d1r5aa2	85	Class delta GST {Mosquito (Anopheles dirus b), iso	98.26
d1axda2	80	Class phi GST {Maize (Zea mays), type I [TaxId: 45	98.24
d1ljra2	79	Class theta GST {Human (Homo sapiens) [TaxId: 9606	98.23
d1fw1a2	83	Class zeta GST {Human (Homo sapiens) [TaxId: 9606]	98.17
d1gnwa2	84	Class phi GST {Mouse-ear cress (Arabidopsis thalia	98.15
d1jlva2	84	Class delta GST {Mosquito (Anopheles dirus b), iso	98.12
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	98.07
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	98.07
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	98.02
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	98.0
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	97.97
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	97.96
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	97.92
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	97.9
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	97.9
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	97.88
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	97.81
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	97.8
d2a2ra2	77	Class pi GST {Human (Homo sapiens) [TaxId: 9606]}	97.79
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	97.76
d2cvda2	74	Class sigma GST {Human (Homo sapiens) [TaxId: 9606	97.63
d1z3ea1	114	Regulatory protein Spx {Bacillus subtilis [TaxId:	97.55
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	97.48
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	97.34
d1rw1a_	114	Hypothetical protein PA3664 (YffB) {Pseudomonas ae	97.34
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	97.3
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	97.18
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	97.18
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	97.1
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	96.96
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	96.89
d2gsqa2	75	Class sigma GST {Squid (Ommastrephes sloani pacifi	96.89
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	96.89
d1gula2	77	Class alpha GST {Human (Homo sapiens), (a1-1) [Tax	96.88
d1j9ba_	138	Arsenate reductase ArsC {Escherichia coli [TaxId:	96.69
d1b48a2	78	Class alpha GST {Mouse (Mus musculus), (a1-4) [Tax	96.63
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	96.58
d1m0ua2	76	Class sigma GST {Fruit fly (Drosophila melanogaste	96.49
d1okta2	85	Pf GST {Malarial parasite (Plasmodium falciparum)	96.44
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	96.42
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	96.41
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	96.39
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	96.38
d1tw9a2	77	Class sigma GST {Heligmosomoides polygyrus [TaxId:	96.26
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	96.26
d1tu7a2	77	Class pi GST {Onchocerca volvulus [TaxId: 6282]}	96.22
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	96.17
d1k3ya2	79	Class alpha GST {Human (Homo sapiens), (a1-1) [Tax	96.13
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	95.9
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	95.65
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	95.54
d2c4ja2	84	Class mu GST {Human (Homo sapiens) [TaxId: 9606]}	95.47
d1n2aa2	80	Class beta GST {Escherichia coli [TaxId: 562]}	95.27
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	95.24
d1duga2	80	Class alpha GST {Schistosoma japonicum [TaxId: 618	95.19
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	94.96
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	94.69
d1nhya2	75	GST-like domain of elongation factor 1-gamma {Bake	94.57
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	94.49
d1pmta2	80	Class beta GST {Proteus mirabilis [TaxId: 584]}	94.48
d1xg8a_	111	Hypothetical protein SA0798 {Staphylococcus aureus	94.39
d1f2ea2	80	Class beta GST {Sphingomonas paucimobilis [TaxId:	94.34
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	94.34
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	94.14
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	94.04
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	94.03
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	93.96
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	93.86
d1fhea2	80	Class alpha GST {Fasciola hepatica [TaxId: 6192]}	93.16
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	92.29
d2fnoa2	87	Hypothetical protein AGR_pAT_752p/Atu5508 {Agrobac	92.05
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	91.84
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	91.42
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	89.95
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	86.69
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	85.77

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.3e-31  Score=197.47  Aligned_cols=101  Identities=46%  Similarity=0.813  Sum_probs=97.6

Q ss_pred             HHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecH
Q 030327           79 STLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCD  158 (179)
Q Consensus        79 ~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~d  158 (179)
                      ++++.++++++||||+|+|++.|+||||.+|+++|++++++|+++|++++++.++++.+++|++|+|||||||++|||+|
T Consensus         6 ~~i~~~i~~~~VvvF~Kgt~~~p~Cp~c~~ak~lL~~~~i~~~~~~v~~~~~~~~~l~~~t~~~TvPqIFi~g~~IGG~d   85 (109)
T d1wika_           6 SGLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNWPTYPQLYVRGDLVGGLD   85 (109)
T ss_dssp             CCHHHHHTTSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHSCCSSCEEECSSSEEECHH
T ss_pred             HHHHHHHhcCCEEEEeCCCCCCCCChHHHHHHHHHHhcCCCceEEEecccHHHHHHHHHhcCCCCCCeEEECCEEEcCHH
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcccHHHHHHhhhcC
Q 030327          159 ITVEAYKNGELQELLEKALCT  179 (179)
Q Consensus       159 el~~l~~~GeL~~~L~~a~~~  179 (179)
                      ++++++++|+|+++|+++++.
T Consensus        86 dl~~l~~~G~L~~lL~~~~~~  106 (109)
T d1wika_          86 IVKELKDNGELLPILKGESGP  106 (109)
T ss_dssp             HHHHHHHHTCSHHHHHTCCSC
T ss_pred             HHHHHHHCCCHHHHHHhcCCC
Confidence            999999999999999998763

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.94  E-value=1.6e-27  Score=173.62  Aligned_cols=96  Identities=24%  Similarity=0.429  Sum_probs=85.8

Q ss_pred             HHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCC-----eEEEEcCCC-HHHHHHHHHhcCCCCcceEeeCC
Q 030327           78 KSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAP-----FETVNILEN-EMLRQGLKEYSSWPTFPQLYIEG  151 (179)
Q Consensus        78 ~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~-----y~~vdV~~d-~~~~~~L~~~sg~~tvP~VfIdG  151 (179)
                      ++.+++.+++++|+||+++     +||||.+++++|+++|++     |.++|+..| ...++.+++.+|++|+|||||||
T Consensus         2 ~~~v~~~i~~~~Vviysk~-----~Cp~C~~ak~ll~~~~~~~~~~~~~e~d~~~d~~~~~~~l~~~~g~~tvPqIfi~g   76 (105)
T d1ktea_           2 QAFVNSKIQPGKVVVFIKP-----TCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRVFIGK   76 (105)
T ss_dssp             HHHHHHHCCTTCEEEEECS-----SCHHHHHHHHHHHHSCBCTTSEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEEETT
T ss_pred             hhHHHHHhccCCEEEEECC-----CCchHHHHHHHHHHhCCccceeeeeecccccccHHHHHHHhhccCCCcCcEEEECC
Confidence            5678999999999999995     999999999999999987     444445555 45667788899999999999999


Q ss_pred             EEEeecHHHHHHHHcccHHHHHHhhhc
Q 030327          152 EFFGGCDITVEAYKNGELQELLEKALC  178 (179)
Q Consensus       152 ~~IGG~del~~l~~~GeL~~~L~~a~~  178 (179)
                      ++|||+|++.+++++|+|+++|+++||
T Consensus        77 ~~IGG~~el~~l~~~G~L~~~L~~~Ga  103 (105)
T d1ktea_          77 ECIGGCTDLESMHKRGELLTRLQQVGA  103 (105)
T ss_dssp             EEEESHHHHHHHHHHTHHHHHHHHHTC
T ss_pred             EEEecHHHHHHHHHCCCHHHHHHHcCC
Confidence            999999999999999999999999997

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=99.94  E-value=7e-27  Score=162.51  Aligned_cols=81  Identities=27%  Similarity=0.466  Sum_probs=78.5

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHHccc
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYKNGE  168 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~~Ge  168 (179)
                      .|+||++     ++||||.+++++|+++|++|+++||+++++.++++.+.+|++++|||||||++|||+|++.+++++|+
T Consensus         2 ~I~iys~-----~~Cp~C~~ak~~L~~~~i~y~~~di~~~~~~~~~~~~~~g~~tvP~i~i~~~~IGG~~el~~l~~~g~   76 (82)
T d1fova_           2 NVEIYTK-----ETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQHIGGYDDLYALDARGG   76 (82)
T ss_dssp             CEEEEEC-----SSCHHHHHHHHHHHHHTCCCEEEECTTCSHHHHHHHHHHSSCCSCEEEETTEEEESHHHHHHHHHTTC
T ss_pred             cEEEEeC-----CCCHhHHHHHHHHHHcCCCeEEEeccchHHHHHHHHHHhCCCCCCeEEECCEEEecHHHHHHHHHcCC
Confidence            5999999     49999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 030327          169 LQELLE  174 (179)
Q Consensus       169 L~~~L~  174 (179)
                      |+++||
T Consensus        77 L~~lLk   82 (82)
T d1fova_          77 LDPLLK   82 (82)
T ss_dssp             SHHHHC
T ss_pred             HHHHhC
Confidence            999985

>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: SH3BGR (SH3-binding, glutamic acid-rich protein-like)
domain: SH3BGRL3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=2.4e-22  Score=142.95  Aligned_cols=84  Identities=24%  Similarity=0.389  Sum_probs=78.6

Q ss_pred             CcEEEEEeeCCCCCCCc------hHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCC--CCcceEeeCCEEEeecHH
Q 030327           88 NKVVLFMKGTKDFPQCG------FSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSW--PTFPQLYIEGEFFGGCDI  159 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp------~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~--~tvP~VfIdG~~IGG~de  159 (179)
                      ..|+||+.+     +|+      +|.+++++|+++||+|+++||+.|++.++.+.+++|+  +++|||||||++|||+|+
T Consensus         2 ~~i~vy~ts-----~~~~~~~~~~~~r~~~lL~~~~I~y~~iDi~~d~~~~~~~~~~~g~~~~t~Pqifv~~~~iGg~de   76 (93)
T d1t1va_           2 SGLRVYSTS-----VTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQIVNGNHYCGDYEL   76 (93)
T ss_dssp             CCEEEEECS-----SCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEEETTEEEEEHHH
T ss_pred             CCEEEEEcc-----CcCChhhHHHHHHHHHHHHHCCCceEEEEecCchhHHHHHHHhccCCCceeEEEEECCEEEecHHH
Confidence            569999996     895      9999999999999999999999999999999999864  599999999999999999


Q ss_pred             HHHHHHcccHHHHHHhh
Q 030327          160 TVEAYKNGELQELLEKA  176 (179)
Q Consensus       160 l~~l~~~GeL~~~L~~a  176 (179)
                      +.+++++|+|+++|+.|
T Consensus        77 l~~~~e~g~L~~~lk~a   93 (93)
T d1t1va_          77 FVEAVEQDTLQEFLKLA   93 (93)
T ss_dssp             HHHHHHTTCHHHHTTCC
T ss_pred             HHHHHHCCCHHHHhccC
Confidence            99999999999999865

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=99.85  E-value=1.2e-21  Score=133.43  Aligned_cols=70  Identities=26%  Similarity=0.502  Sum_probs=63.4

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHH
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVE  162 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~  162 (179)
                      +.+|+||++     ++||||.+|+++|+++|++|+++|++.++.. +.+.+.+|+.++|+|||||++|||+|||.+
T Consensus         4 ~~~I~iYs~-----~~C~~C~~ak~lL~~~~i~~~~~~v~~~~~~-~~~~~~~~~~tvP~i~i~g~~IGG~~el~~   73 (74)
T d1nm3a1           4 QESISIFTK-----PGCPFCAKAKQLLHDKGLSFEEIILGHDATI-VSVRAVSGRTTVPQVFIGGKHIGGSDDLEK   73 (74)
T ss_dssp             CCCEEEEEC-----SSCHHHHHHHHHHHHHTCCCEEEETTTTCCH-HHHHHHTCCSSSCEEEETTEEEESHHHHHH
T ss_pred             cCcEEEEEC-----CCCHHHHHHHHHHHHcCCCeEEEEccCcHHH-HHHHHHhCCccCCEEEECCEEEEChHHHhh
Confidence            457999999     5999999999999999999999999887654 566778899999999999999999999876

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=99.80  E-value=9.9e-20  Score=123.42  Aligned_cols=69  Identities=19%  Similarity=0.357  Sum_probs=62.3

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecH--HHHHH
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCD--ITVEA  163 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~d--el~~l  163 (179)
                      +|+||++     ++||||.+++++|+++|++|+++||++|++.++.++.. |.+++|+|||||++|||++  ++.++
T Consensus         2 ~v~iYt~-----~~C~~C~~ak~~L~~~~i~~~~~~i~~~~~~~~~~~~~-g~~tvP~i~i~g~~igGf~~d~l~~L   72 (74)
T d1r7ha_           2 SITLYTK-----PACVQCTATKKALDRAGLAYNTVDISLDDEARDYVMAL-GYVQAPVVEVDGEHWSGFRPERIKQL   72 (74)
T ss_dssp             CEEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHT-TCBCCCEEEETTEEEESCCHHHHHHH
T ss_pred             EEEEEeC-----CCChhHHHHHHHHHHcCCceEEEEccCCHHHHHHHHHh-CCCCcCEEEECCEEEeCCCHhHHHHh
Confidence            5999999     59999999999999999999999999999998888765 8999999999999999985  44443

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=1.2e-20  Score=131.57  Aligned_cols=73  Identities=18%  Similarity=0.393  Sum_probs=63.8

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcC-----CCeEEEEcCCCHHHHHHHHHhcCC--CCcceEeeCCEEEeecHHHH
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLN-----APFETVNILENEMLRQGLKEYSSW--PTFPQLYIEGEFFGGCDITV  161 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~g-----v~y~~vdV~~d~~~~~~L~~~sg~--~tvP~VfIdG~~IGG~del~  161 (179)
                      +|+||++     ++||||.++|++|+++|     ++|+++|++.+++.++++.+..++  .|+|||||||++|||+|++.
T Consensus         2 kvviysk-----~~Cp~C~~aK~ll~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~tvPqIfi~g~~IGG~~el~   76 (85)
T d1egoa_           2 QTVIFGR-----SGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFVDQQHIGGYTDFA   76 (85)
T ss_dssp             EEEEECC-----TTSTHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEEETTEEEESSHHHH
T ss_pred             EEEEEeC-----CCCHhHHHHHHHHHHcCCCCCCceEEEEecCCCHHHHHHHHHHhcCCCCCCCEEEECCEEEECHHHHH
Confidence            6999999     49999999999999965     678888887777778888887654  68999999999999999999


Q ss_pred             HHHHc
Q 030327          162 EAYKN  166 (179)
Q Consensus       162 ~l~~~  166 (179)
                      ++.++
T Consensus        77 ~~~~~   81 (85)
T d1egoa_          77 AWVKE   81 (85)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98764

>d1abaa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.78  E-value=2.7e-19  Score=125.64  Aligned_cols=75  Identities=24%  Similarity=0.419  Sum_probs=61.1

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCC-----CHHHHHHHHHh-----cCCCCcceEee-CCEEEeecH
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE-----NEMLRQGLKEY-----SSWPTFPQLYI-EGEFFGGCD  158 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~-----d~~~~~~L~~~-----sg~~tvP~VfI-dG~~IGG~d  158 (179)
                      +.||+++ ++.+.||||.+||++|+++|++|++++++.     +...++++.+.     +|++|+||||| ||++|||+|
T Consensus         2 ~~Iy~~~-~~~~~C~~C~~AK~lL~~~~i~y~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~TvPqIfi~dg~~IGG~d   80 (87)
T d1abaa_           2 FKVYGYD-SNIHKCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPDGSHIGGFD   80 (87)
T ss_dssp             EEEEECC-TTTSCCHHHHHHHHHHHHTTCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEECTTSCEEESHH
T ss_pred             EEEEEeC-CCCCCChhHHHHHHHHHHcCCCceeccccccccccCHHHHHHHHHHhcccCCCCceeCeEEecCCcEEECHH
Confidence            4689886 334679999999999999999999999864     35555555443     57899999999 699999999


Q ss_pred             HHHHHHH
Q 030327          159 ITVEAYK  165 (179)
Q Consensus       159 el~~l~~  165 (179)
                      +|+++++
T Consensus        81 el~e~~k   87 (87)
T d1abaa_          81 QLREYFK   87 (87)
T ss_dssp             HHHHHTC
T ss_pred             HHHHHhC
Confidence            9998753

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=2.1e-19  Score=122.68  Aligned_cols=69  Identities=13%  Similarity=0.314  Sum_probs=62.4

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeec--HHHHHH
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGC--DITVEA  163 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~--del~~l  163 (179)
                      +|+||++     ++||||.+++++|+++|++|+++||++|++.++.++. .|.+++|+|+|||++|||+  |.+.+|
T Consensus         2 ki~iYs~-----~~C~~C~~ak~~L~~~~i~y~~~~i~~~~~~~~~~~~-~g~~tvP~i~i~~~~i~Gf~~d~i~~L   72 (76)
T d1h75a_           2 RITIYTR-----NDCVQCHATKRAMENRGFDFEMINVDRVPEAAEALRA-QGFRQLPVVIAGDLSWSGFRPDMINRL   72 (76)
T ss_dssp             CEEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHH-TTCCSSCEEEETTEEEESCCHHHHGGG
T ss_pred             EEEEEeC-----CCCccHHHHHHHHHhcCceeEEEeecCCHHHHHHHHh-cCCCCCCEEEECCEEEECCCHHHHHHH
Confidence            5999999     5999999999999999999999999999999888866 5999999999999999998  455444

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.17  E-value=8e-11  Score=82.51  Aligned_cols=85  Identities=15%  Similarity=0.191  Sum_probs=64.2

Q ss_pred             CHHHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEe
Q 030327           74 TPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQLY  148 (179)
Q Consensus        74 ~~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~Vf  148 (179)
                      .+++.+.++.+-....|++|+.     +|||+|+.++.+|+++     ++.+..+|+++++++.+    .+|..++|.+|
T Consensus         3 ~~~~~e~ik~l~~~~~i~~F~s-----~~C~~C~~~~p~~~~~a~~~~~i~~~~vd~~~~~~l~~----~~~I~~vPt~~   73 (96)
T d1hyua4           3 AQSLLEQIRDIDGDFEFETYYS-----LSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQNEIT----ERNVMGVPAVF   73 (96)
T ss_dssp             CHHHHHHHHHCCSCEEEEEEEC-----TTCSSHHHHHHHHHHHHHHCTTEEEEEEETTTCHHHHH----HTTCCSSSEEE
T ss_pred             hHHHHHHHHhcCCCeEEEEEEC-----CCCcchHHHHHHHHHHHHhCCceEEEEEecccchHHHh----hcccccccEEE
Confidence            3566677776666667888888     6999999999999765     46788999988876543    45788999999


Q ss_pred             eCCEEEe-ec---HHHHHHHHcc
Q 030327          149 IEGEFFG-GC---DITVEAYKNG  167 (179)
Q Consensus       149 IdG~~IG-G~---del~~l~~~G  167 (179)
                      +||+.++ |.   +++.+..++|
T Consensus        74 ~ng~~~~~G~~~~~~l~~~lesg   96 (96)
T d1hyua4          74 VNGKEFGQGRMTLTEIVAKVDTG   96 (96)
T ss_dssp             ETTEEEEESCCCHHHHHHHHCCS
T ss_pred             ECCEEEEecCCCHHHHHHHHhCC
Confidence            9999885 43   4555555554

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.17  E-value=5.8e-12  Score=89.47  Aligned_cols=62  Identities=16%  Similarity=0.261  Sum_probs=50.5

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEE
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFF  154 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~I  154 (179)
                      .+.|++|++     +||++|++++.+|++++.+|...++..|.+..++|.+.+|.. +|+|+|||+.+
T Consensus        16 ~p~i~lft~-----~~C~~C~~a~~~L~~~~~~~~~~~v~vd~~~~~~l~~~y~~~-VPvl~idg~~~   77 (100)
T d1wjka_          16 LPVLTLFTK-----APCPLCDEAKEVLQPYKDRFILQEVDITLPENSTWYERYKFD-IPVFHLNGQFL   77 (100)
T ss_dssp             CCEEEEEEC-----SSCHHHHHHHHHTSTTSSSSEEEEEETTSSTTHHHHHHSSSS-CSEEEESSSEE
T ss_pred             CCEEEEEEC-----CCCCChHHHHHHHHHhhhhcceEEEecccccCHHHHHHhccc-CCceeecCceE
Confidence            456999999     599999999999999999887766655544456677777876 99999999775

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=98.99  E-value=5.5e-10  Score=75.74  Aligned_cols=57  Identities=18%  Similarity=0.185  Sum_probs=45.8

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHh-cCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEee
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKS-LNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGG  156 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~-~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG  156 (179)
                      |+||++     ++|+.|..|+++|.+ .+++++++||++|+++.+.    +|.. +|+|.++|...-+
T Consensus         2 ltLyt~-----~~C~LCe~A~~~l~~~~~~~~~~vdI~~d~~l~~~----y~~~-IPVl~~~~~~~l~   59 (75)
T d1ttza_           2 LTLYQR-----DDCHLCDQAVEALAQARAGAFFSVFIDDDAALESA----YGLR-VPVLRDPMGRELD   59 (75)
T ss_dssp             EEEEEC-----SSCHHHHHHHHHHHHTTCCCEEEEECTTCHHHHHH----HTTT-CSEEECTTCCEEE
T ss_pred             EEEECC-----CCccHHHHHHHHHHhccCCcEEEEEccCCHHHHHH----hCCe-eeEEEECCeeEEc
Confidence            789999     599999999998766 6899999999999876544    3444 8999997755444

>d1g7oa2 c.47.1.5 (A:1-75) Glutaredoxin 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Glutaredoxin 2
species: Escherichia coli [TaxId: 562]

Probab=98.91  E-value=2.3e-09  Score=72.03  Aligned_cols=69  Identities=14%  Similarity=0.210  Sum_probs=58.7

Q ss_pred             EEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee-CCEEEeecHHHHHHHHc
Q 030327           91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYI-EGEFFGGCDITVEAYKN  166 (179)
Q Consensus        91 vlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI-dG~~IGG~del~~l~~~  166 (179)
                      .||+.     +.||||.+|+-+|..+|++|+.++++.+.  .+++.+.++..+||++.. ||+.+.+.+++.++.++
T Consensus         2 kLY~~-----~~cP~~~rvr~~l~~kgi~~e~~~~~~~~--~~~~~~~~p~~~VP~L~~~dg~~i~eS~~I~~yLd~   71 (75)
T d1g7oa2           2 KLYIY-----DHCPYCLKARMIFGLKNIPVELHVLLNDD--AETPTRMVGQKQVPILQKDDSRYMPESMDIVHYVDK   71 (75)
T ss_dssp             EEEEC-----TTCHHHHHHHHHHHHHTCCCEEEECCTTT--THHHHHHHSSSCCCEEEETTTEEEECHHHHHHHHHH
T ss_pred             EEEcc-----CCCCchHHHHHHHHHhCCCcccccccccc--hHHHHHhCCCCceEEEEEcCCCEEecHHHHHHHHHH
Confidence            47887     48999999999999999999999986653  356777889999999987 67999999999987654

>d1k0ma2 c.47.1.5 (A:6-91) Chloride intracellular channel 1 (clic1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Chloride intracellular channel 1 (clic1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=7.4e-08  Score=66.17  Aligned_cols=77  Identities=18%  Similarity=0.264  Sum_probs=62.1

Q ss_pred             cEEEEEeeCCC---CCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327           89 KVVLFMKGTKD---FPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        89 ~Vvlysk~t~~---~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      .+.+|.|...+   ...||||++++-+|.++|++|+.+.|+... ..+++++.+...++|.+..||+.+.+...+.++.+
T Consensus         2 ~i~l~~ka~~dg~~~~~cPf~~rv~~~L~~kgi~~~~~~v~~~~-~~~~~~~~nP~~~vPvL~~~~~~i~eS~~I~~YLe   80 (86)
T d1k0ma2           2 QVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKR-RTETVQKLCPGGELPFLLYGTEVHTDTNKIEEFLE   80 (86)
T ss_dssp             CEEEEEEBCTTSSSBCSCHHHHHHHHHHHHHTCCCEEEEECTTS-CCHHHHHHCTTCCSSEEEETTEEEECHHHHHHHHH
T ss_pred             cEEEEEecCCCcCcCCCCHhHHHHHHHHHHHCCCcEEEEeeccc-ccHHHHHHhccCceeEEEEcccccccHHHHHHHHH
Confidence            57889877432   236999999999999999999988886431 23567888889999999999999999998888854


Q ss_pred             c
Q 030327          166 N  166 (179)
Q Consensus       166 ~  166 (179)
                      +
T Consensus        81 e   81 (86)
T d1k0ma2          81 A   81 (86)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1oyja2 c.47.1.5 (A:2-85) Class tau GST {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class tau GST
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.56  E-value=1.3e-07  Score=64.63  Aligned_cols=74  Identities=12%  Similarity=0.036  Sum_probs=60.6

Q ss_pred             cCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcC-CCCcceEeeCCEEEeecHHHHHHH
Q 030327           86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSS-WPTFPQLYIEGEFFGGCDITVEAY  164 (179)
Q Consensus        86 ~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg-~~tvP~VfIdG~~IGG~del~~l~  164 (179)
                      ++..++||+.     ..||||++++-.|..+|++|+.++++.... .+++.+.+. ..++|.+..||..+.+...+.++.
T Consensus         2 ~~~~l~Ly~~-----~~Sp~~~rvr~~L~~kgi~~e~~~v~~~~~-~~~~~~~nP~~g~vP~L~~~g~~l~eS~~I~~YL   75 (84)
T d1oyja2           2 EEKELVLLDF-----WVSPFGQRCRIAMAEKGLEFEYREEDLGNK-SDLLLRSNPVHRKIPVLLHAGRPVSESLVILQYL   75 (84)
T ss_dssp             CSCCEEEEEC-----TTCHHHHHHHHHHHHHTCCCEEEECCTTSC-CHHHHHHSTTTCCSCEEEETTEEEESHHHHHHHH
T ss_pred             CCCceEEEcC-----CCChHHHHHHHHHHHcCCCcEEEEEccCcC-CHHHHhhCCCcCcccEEEECCceEEcHHHHHHHH
Confidence            4678999998     489999999999999999999999864321 245566665 578999999999999999888876


Q ss_pred             H
Q 030327          165 K  165 (179)
Q Consensus       165 ~  165 (179)
                      +
T Consensus        76 ~   76 (84)
T d1oyja2          76 D   76 (84)
T ss_dssp             H
T ss_pred             H
Confidence            5

>d1v2aa2 c.47.1.5 (A:1-83) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]

Probab=98.55  E-value=3e-07  Score=62.20  Aligned_cols=70  Identities=13%  Similarity=0.080  Sum_probs=60.3

Q ss_pred             EEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCC-CHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327           91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE-NEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        91 vlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~-d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      .+|..     +.||+|++++-+|+++|++|+.+.|+- ..+-++++.+.+...++|.+..||..+.....+.++.+
T Consensus         2 ~LY~~-----~~Sp~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~nP~g~VP~L~~~g~~l~eS~aI~~YL~   72 (83)
T d1v2aa2           2 DYYYS-----LISPPCQSAILLAKKLGITLNLKKTNVHDPVERDALTKLNPQHTIPTLVDNGHVVWESYAIVLYLV   72 (83)
T ss_dssp             EEEEC-----TTCHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCTTCCSCEEEETTEEEESHHHHHHHHH
T ss_pred             EEECC-----CCChHHHHHHHHHHHhCCCceEEEEeCCCCcchHHHHHHhhccCCCEEEEccceeEcHHHHHHHHH
Confidence            47777     699999999999999999999998863 45567788888889999999999999999888887643

>d1gwca2 c.47.1.5 (A:4-86) Class tau GST {Aegilops tauschii, also known as Triticum tauschii [TaxId: 37682]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class tau GST
species: Aegilops tauschii, also known as Triticum tauschii [TaxId: 37682]

Probab=98.53  E-value=1.5e-07  Score=63.25  Aligned_cols=72  Identities=15%  Similarity=0.058  Sum_probs=56.3

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcC-CCCcceEeeCCEEEeecHHHHHHHH
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSS-WPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg-~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      ..+.||+..     .||||++|+-+|..+|++|+.++++-...- +.+.+... ...+|.+..||..|.....+.++.+
T Consensus         2 ~~mkLy~~~-----~sp~~~rvr~~l~~kgi~~e~~~v~~~~~~-~~~~~~~~~~~~~p~l~~dg~~i~eS~~I~~YL~   74 (83)
T d1gwca2           2 DDLKLLGAW-----PSPFVTRVKLALALKGLSYEDVEEDLYKKS-ELLLKSNPVHKKIPVLIHNGAPVCESMIILQYID   74 (83)
T ss_dssp             CCEEEEECT-----TCHHHHHHHHHHHHHTCCCEEEECCTTSCC-HHHHHHSTTTCCSCEEEETTEEEESHHHHHHHHH
T ss_pred             CeEEEEecC-----CChHHHHHHHHHHHCCCCeEEEEEeccchh-HHHHHHHhccCCCceeecCCceEcCHHHHHHHHH
Confidence            357899884     899999999999999999999988543211 23344443 5678999999999999999888743

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.53  E-value=4e-08  Score=68.54  Aligned_cols=74  Identities=16%  Similarity=0.303  Sum_probs=48.1

Q ss_pred             CCHHHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc----------CCCeEEEEcCCCHHHHHHHHHhcCCC
Q 030327           73 LTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL----------NAPFETVNILENEMLRQGLKEYSSWP  142 (179)
Q Consensus        73 ~~~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~----------gv~y~~vdV~~d~~~~~~L~~~sg~~  142 (179)
                      ++++..+.++++-+.-.|++|+.     +||++|++++..+.+.          +|.+..+|+++++++    .+..|-.
T Consensus         2 l~~~~~e~~~~~~~~v~i~~F~a-----~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~~l----~~~~~V~   72 (107)
T d1a8la2           2 LMDETKQAIRNIDQDVRILVFVT-----PTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEW----ADQYNVM   72 (107)
T ss_dssp             CCHHHHHHHTTCCSCEEEEEEEC-----SSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHH----HHHTTCC
T ss_pred             CCHHHHHHHHhcCCCeEEEEEEc-----CccccchhhChhHHhhhhhhhhccCCcEEEEEecccccccc----ccccccc
Confidence            35566666665333223445776     6999999999988654          255677788777764    3445677


Q ss_pred             CcceEe--eCCEEEe
Q 030327          143 TFPQLY--IEGEFFG  155 (179)
Q Consensus       143 tvP~Vf--IdG~~IG  155 (179)
                      .+|.++  .+|+.++
T Consensus        73 ~vPTi~i~~~G~~~~   87 (107)
T d1a8la2          73 AVPKIVIQVNGEDRV   87 (107)
T ss_dssp             SSCEEEEEETTEEEE
T ss_pred             cceEEEEEeCCeEEE
Confidence            788775  4676554

>d1eema2 c.47.1.5 (A:5-102) Class omega GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class omega GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=1.1e-07  Score=66.75  Aligned_cols=75  Identities=17%  Similarity=0.232  Sum_probs=61.2

Q ss_pred             cCCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee-CCEEEeecHHHHHHH
Q 030327           86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYI-EGEFFGGCDITVEAY  164 (179)
Q Consensus        86 ~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI-dG~~IGG~del~~l~  164 (179)
                      ....+.||+.     +.||||++|+-+|.++|++|+.++|+-.. ..+++.++....++|++.. ||..|.+...+.++.
T Consensus        16 ~~~~~~Ly~~-----~~sP~~~rv~~~l~~kgi~~e~~~v~~~~-~~~~~~~~nP~g~VPvL~~~dg~~i~eS~aI~~YL   89 (98)
T d1eema2          16 PEGSIRIYSM-----RFCPFAERTRLVLKAKGIRHEVININLKN-KPEWFFKKNPFGLVPVLENSQGQLIYESAITCEYL   89 (98)
T ss_dssp             CTTCEEEEEC-----TTCHHHHHHHHHHHHTTCCEEEEEBCTTS-CCGGGGGTCTTCCSCEEEETTCCEEESHHHHHHHH
T ss_pred             CCCcEEEEcC-----CCChHHHHHHHHHHHhCCCCEEEEecccC-CcHHHHhhhccccceeEEeCCCCEEcCHHHHHHHH
Confidence            3567999999     49999999999999999999999885321 2355777888899999988 478899998888875


Q ss_pred             Hc
Q 030327          165 KN  166 (179)
Q Consensus       165 ~~  166 (179)
                      ++
T Consensus        90 ~e   91 (98)
T d1eema2          90 DE   91 (98)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>d1e6ba2 c.47.1.5 (A:8-87) Class zeta GST {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class zeta GST
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.49  E-value=2.4e-07  Score=62.31  Aligned_cols=72  Identities=14%  Similarity=0.137  Sum_probs=60.3

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcC--CCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNIL--ENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~--~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      ++.||..     +.|++|.+++-+|.++|++|+.+.|+  ..+....++.+.....++|++..||..+.+...+.++.+
T Consensus         1 ~m~Ly~~-----~~sp~~~kv~~~L~~~gi~~~~~~i~~~~~~~~~~~~~~~~p~~~vPvL~~~~~~l~eS~aI~~yL~   74 (80)
T d1e6ba2           1 KLKLYSY-----WRSSCAHRVRIALALKGLDYEYIPVNLLKGDQFDSDFKKINPMGTVPALVDGDVVINDSFAIIMYLD   74 (80)
T ss_dssp             CCEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEECCTTTTGGGCHHHHHHCTTCCSSEEEETTEEEESHHHHHHHHH
T ss_pred             CEEEEeC-----CCChHHHHHHHHHHHhCCCCEEEEEeccccccccHHHhhcCccccCCEEEECCEEEECHHHHHHHHH
Confidence            4678888     58999999999999999999988875  344455667778889999999999999999888887754

>d1z9ha2 c.47.1.5 (A:100-212) Microsomal prostaglandin E synthase-2 {Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Microsomal prostaglandin E synthase-2
species: Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]

Probab=98.48  E-value=7.9e-08  Score=68.75  Aligned_cols=69  Identities=19%  Similarity=0.348  Sum_probs=55.5

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeC----CEEEeecHHHHHHH
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIE----GEFFGGCDITVEAY  164 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfId----G~~IGG~del~~l~  164 (179)
                      +++||+..     .||||.+|+.+|..+|++|+.++++....  +. ....+..++|++.++    |+.+++..++.++.
T Consensus         2 ~i~LY~~~-----~sP~~~kvr~~L~~k~l~~~~~~v~~~~~--~~-~~~~~~~~vP~l~~~~~~~g~~i~eS~~Ii~YL   73 (113)
T d1z9ha2           2 QLTLYQYK-----TCPFCSKVRAFLDFHALPYQVVEVNPVLR--AE-IKFSSYRKVPILVAQEGESSQQLNDSSVIISAL   73 (113)
T ss_dssp             EEEEEECT-----TCHHHHHHHHHHHHTTCCEEEEECCTTTC--GG-GTTCSCCSSCEEEEEETTEEEEECSHHHHHHHH
T ss_pred             EEEEEcCC-----CChHHHHHHHHHHHcCCeeEEeccCcccc--hh-hccCccccccccccccCCCceEeecHHHHHHHH
Confidence            58999994     99999999999999999999999854321  22 245688999998753    58999999988875


Q ss_pred             H
Q 030327          165 K  165 (179)
Q Consensus       165 ~  165 (179)
                      +
T Consensus        74 ~   74 (113)
T d1z9ha2          74 K   74 (113)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.48  E-value=2.9e-07  Score=65.60  Aligned_cols=69  Identities=14%  Similarity=0.321  Sum_probs=49.1

Q ss_pred             HHHHhhhcCCc-EEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeC
Q 030327           79 STLDKVVTGNK-VVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIE  150 (179)
Q Consensus        79 ~~l~~li~~~~-Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fId  150 (179)
                      +.++++++.++ ++|+...    +||+.|+.++..|+++     ++.|..+|+++++++.+    ..|..++|.+  |.|
T Consensus        17 ~~~~~~~~~~~~vvv~F~a----~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~----~~~V~~~Pt~~~~~~   88 (113)
T d1r26a_          17 EQFRNIMSEDILTVAWFTA----VWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSEIVS----KCRVLQLPTFIIARS   88 (113)
T ss_dssp             HHHHHHHHSSSCEEEEEEC----TTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHHHHH----HTTCCSSSEEEEEET
T ss_pred             HHHHHHHcCCCeEEEEEEC----CCCccchhhceeccccccccccccccccccccchhhHH----HccccCCCEEEEEEC
Confidence            34556666665 5554443    6999999999998764     67889999998877544    3466677766  779


Q ss_pred             CEEEe
Q 030327          151 GEFFG  155 (179)
Q Consensus       151 G~~IG  155 (179)
                      |+.+.
T Consensus        89 G~~v~   93 (113)
T d1r26a_          89 GKMLG   93 (113)
T ss_dssp             TEEEE
T ss_pred             CEEEE
Confidence            96653

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=98.41  E-value=4.7e-07  Score=64.00  Aligned_cols=90  Identities=18%  Similarity=0.265  Sum_probs=58.9

Q ss_pred             CHHHHHHHHhhhcCCc-EEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE
Q 030327           74 TPELKSTLDKVVTGNK-VVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQL  147 (179)
Q Consensus        74 ~~~~~~~l~~li~~~~-Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V  147 (179)
                      .++.++.+++.+.+++ |+|+...    +||++|+.+...|++.     ++.+..+|+++++++.+.+    +-..+|.+
T Consensus        12 ~e~~~~~l~~~~~~~k~vvv~F~a----~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~d~~~~l~~~~----~I~~~Pt~   83 (113)
T d1ti3a_          12 VDTWKEHFEKGKGSQKLIVVDFTA----SWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEW----NVEAMPTF   83 (113)
T ss_dssp             HHHHHHHHHHHTTSSSEEEEEEEC----SSCHHHHHHHHHHHHHHHHCSSEEEEEEETTTCHHHHHHH----HCSSTTEE
T ss_pred             HHHHHHHHHHHHcCCCEEEEEEEc----CccccchhhhhhhhhhhccCCCceEEeeeeeccccccccC----eecccceE
Confidence            3466778888887766 4444443    6999999999888654     4557788888888776554    34456655


Q ss_pred             --eeCCEEEeecHHHHHHHHcccHHHHHHh
Q 030327          148 --YIEGEFFGGCDITVEAYKNGELQELLEK  175 (179)
Q Consensus       148 --fIdG~~IGG~del~~l~~~GeL~~~L~~  175 (179)
                        |.||+.++...-.    ...+|.++|++
T Consensus        84 ~~~k~G~~v~~~~G~----~~~~l~~~i~k  109 (113)
T d1ti3a_          84 IFLKDGKLVDKTVGA----DKDGLPTLVAK  109 (113)
T ss_dssp             EEEETTEEEEEEECC----CTTHHHHHHHH
T ss_pred             EEEECCEEEEEEcCC----CHHHHHHHHHH
Confidence              7799876433210    12346666654

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.41  E-value=6.4e-07  Score=63.47  Aligned_cols=91  Identities=21%  Similarity=0.270  Sum_probs=59.3

Q ss_pred             CHHHHHHHHhhhcCCc-EEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE
Q 030327           74 TPELKSTLDKVVTGNK-VVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQL  147 (179)
Q Consensus        74 ~~~~~~~l~~li~~~~-Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V  147 (179)
                      .++.++.+++..+.++ |+|+..+    +||++|+.+...|+++     ++.+..+|+++++++.+.    .|-..+|.+
T Consensus        14 ~~~~~~~~~~~~~~~~~vlv~F~a----~wC~~C~~~~p~~~~l~~~~~~~~~~~vd~~~~~~l~~~----~~V~~~Pt~   85 (114)
T d1xfla_          14 VETWNEQLQKANESKTLVVVDFTA----SWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASD----WAIQAMPTF   85 (114)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEEEC----TTCHHHHHHHHHHHHHHHHCSSEEEEEEETTTSHHHHHH----TTCCSSSEE
T ss_pred             HHHHHHHHHHhhccCCeEEEEEEc----CCCCCccccccchhhhcccccccceeEEEeeeceeeccc----cceeeeEEE
Confidence            3456677777777665 4444443    6999999999888664     456778888888776543    466677766


Q ss_pred             --eeCCEEEeecHHHHHHHHcccHHHHHHhh
Q 030327          148 --YIEGEFFGGCDITVEAYKNGELQELLEKA  176 (179)
Q Consensus       148 --fIdG~~IGG~del~~l~~~GeL~~~L~~a  176 (179)
                        |.||+.++.+.-.    ...+|++++++.
T Consensus        86 ~~~~~G~~v~~~~G~----~~~~l~~~i~k~  112 (114)
T d1xfla_          86 MFLKEGKILDKVVGA----KKDELQSTIAKH  112 (114)
T ss_dssp             EEEETTEEEEEEESC----CHHHHHHHHHHH
T ss_pred             EEEECCEEEEEEeCc----CHHHHHHHHHHh
Confidence              6799876433210    123566666554

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.38  E-value=1.1e-07  Score=64.15  Aligned_cols=59  Identities=17%  Similarity=0.422  Sum_probs=45.7

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCE--EEee
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGE--FFGG  156 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~--~IGG  156 (179)
                      .|++|+.     +||++|++++..|++.      ++.+..+|+++++++    ....|...+|.++++|+  ++|.
T Consensus         4 ~v~~F~a-----~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~l----~~~~~V~~~Pt~~~~~~~~~~G~   70 (85)
T d1nhoa_           4 NIEVFTS-----PTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREK----AIEYGLMAVPAIAINGVVRFVGA   70 (85)
T ss_dssp             CEEEESC-----SSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGGG----GGGTCSSCSSEEEETTTEEEECS
T ss_pred             EEEEEEC-----CCCcchHHHHHHHhhhcccccccccccccccccchhh----HHhcCceEeCEEEECCcEEEEcC
Confidence            4777887     6999999999888654      377888888887764    44568889999999875  4554

>d1k0da2 c.47.1.5 (A:109-200) Yeast prion protein ure2p, nitrogen regulation fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Yeast prion protein ure2p, nitrogen regulation fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.37  E-value=9.2e-07  Score=60.91  Aligned_cols=73  Identities=14%  Similarity=0.063  Sum_probs=60.6

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC--HHHHHHHHHhcCCCCcceEee---CCEEEeecHHHHH
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN--EMLRQGLKEYSSWPTFPQLYI---EGEFFGGCDITVE  162 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d--~~~~~~L~~~sg~~tvP~VfI---dG~~IGG~del~~  162 (179)
                      ..++||..     +.||+|.+|+-+|+++|++|+.+.|+-.  +....++.+.....++|.+..   ||..+.....+.+
T Consensus         4 ~~~tLY~~-----~~sp~~~kV~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~np~g~vP~L~d~~~~~~~l~ES~aI~~   78 (92)
T d1k0da2           4 EGYTLFSH-----RSAPNGFKVAIVLSELGFHYNTIFLDFNLGEHRAPEFVSVNPNARVPALIDHGMDNLSIWESGAILL   78 (92)
T ss_dssp             SSEEEEEC-----TTCHHHHHHHHHHHHTTCCEEEEECCTTTTGGGSHHHHTTCTTCCSCEEEEGGGTTEEEESHHHHHH
T ss_pred             CceEEeeC-----CCCccHHHHHHHHHHcCCCCEEEEeeccCCcccCHHHHHHhhccccceeEEecccceEEcCHHHHHH
Confidence            45899998     5999999999999999999999888633  344467778888999999986   7888888888887


Q ss_pred             HHH
Q 030327          163 AYK  165 (179)
Q Consensus       163 l~~  165 (179)
                      +.+
T Consensus        79 YL~   81 (92)
T d1k0da2          79 HLV   81 (92)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            753

>d1aw9a2 c.47.1.5 (A:2-82) Class phi GST {Maize (Zea mays), type III [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class phi GST
species: Maize (Zea mays), type III [TaxId: 4577]

Probab=98.36  E-value=1.5e-07  Score=63.45  Aligned_cols=72  Identities=14%  Similarity=0.095  Sum_probs=60.0

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCC--CHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE--NEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~--d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      ++.||..     +.||+|++++-+|.++|++|+.++|+-  .+....++.+.+...++|.+..||..+.....+.++.+
T Consensus         2 pm~Ly~~-----~~sp~~~~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~aI~~YL~   75 (81)
T d1aw9a2           2 PLKLYGM-----PLSPNVVRVATVLNEKGLDFEIVPVDLTTGAHKQPDFLALNPFGQIPALVDGDEVLFESRAINRYIA   75 (81)
T ss_dssp             CEEEESC-----TTCHHHHHHHHHHHHTTCCEEEECCCSSTTSSCCCSGGGTCTTCCSCEEEETTEEEESHHHHHHHHH
T ss_pred             CEEEEeC-----CCChhHHHHHHHHHhcCCCCEEEEecCCCcchhhHHHHHHhhcCeeEEEEECCcEEECHHHHHHHHH
Confidence            4788987     599999999999999999999988753  23344567777888899999999999999888887754

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.28  E-value=1.5e-06  Score=60.16  Aligned_cols=70  Identities=16%  Similarity=0.311  Sum_probs=48.7

Q ss_pred             HHHhhhcCCc-EEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCC
Q 030327           80 TLDKVVTGNK-VVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEG  151 (179)
Q Consensus        80 ~l~~li~~~~-Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG  151 (179)
                      .+++++++++ ++|+..+    +||++|+.+...|+++     ++.+..+|+++++++.+    ..+-..+|.+  |.||
T Consensus        10 ~f~~~i~~~~~vvv~F~a----~wC~~C~~~~~~~~~l~~~~~~~~~~~vd~d~~~~~~~----~~~V~~~Pt~i~~k~G   81 (103)
T d1syra_          10 EFDSIISQNELVIVDFFA----EWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTE----KENITSMPTFKVYKNG   81 (103)
T ss_dssp             HHHHHHHHCSEEEEEEEC----TTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTTHHHHH----HTTCCSSSEEEEEETT
T ss_pred             HHHHHHhCCCcEEEEEeC----CcccCcccccccchhhhhcccceEEEeeccccCcceee----eeeeecceEEEEEECC
Confidence            3455555544 5554444    6999999999888665     56688899988876543    4467788875  6799


Q ss_pred             EEEeec
Q 030327          152 EFFGGC  157 (179)
Q Consensus       152 ~~IGG~  157 (179)
                      +.++.+
T Consensus        82 ~~v~~~   87 (103)
T d1syra_          82 SSVDTL   87 (103)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            877544

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=98.26  E-value=4.4e-06  Score=58.85  Aligned_cols=90  Identities=16%  Similarity=0.260  Sum_probs=59.0

Q ss_pred             HHHHHHHHhhhcCC-cEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE
Q 030327           75 PELKSTLDKVVTGN-KVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQL  147 (179)
Q Consensus        75 ~~~~~~l~~li~~~-~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V  147 (179)
                      ++.++.+.+...++ .|+|+...    +||++|+.+...|+++      ++.|..+|+++++++.+.    .|-..+|.+
T Consensus        11 ~~fd~~l~~~~~~~k~vvv~f~a----~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~l~~~----~~v~~~Pt~   82 (112)
T d1ep7a_          11 AAWDAQLAKGKEEHKPIVVDFTA----TWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEA----AGITAMPTF   82 (112)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEEEC----TTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHHHHHH----HTCCBSSEE
T ss_pred             HHHHHHHHHHhhcCCeEEEEEEc----CCcCCCcccchhhhhhhhcccceEEEEEeecccccccccc----ccccCCCEE
Confidence            45566677766554 46665554    6999999999988654      367889999888766544    355567765


Q ss_pred             --eeCCEEEeecHHHHHHHHcccHHHHHHhh
Q 030327          148 --YIEGEFFGGCDITVEAYKNGELQELLEKA  176 (179)
Q Consensus       148 --fIdG~~IGG~del~~l~~~GeL~~~L~~a  176 (179)
                        |.||+.+..+.-.    ...+|+++|++-
T Consensus        83 ~~~~~G~~v~~~~G~----~~~~l~~~i~k~  109 (112)
T d1ep7a_          83 HVYKDGVKADDLVGA----SQDKLKALVAKH  109 (112)
T ss_dssp             EEEETTEEEEEEESC----CHHHHHHHHHHH
T ss_pred             EEEECCEEEEEEeCc----CHHHHHHHHHHH
Confidence              6689876543211    124566666554

>d1r5aa2 c.47.1.5 (A:2-86) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]

Probab=98.26  E-value=2.2e-06  Score=58.13  Aligned_cols=70  Identities=14%  Similarity=0.191  Sum_probs=60.5

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCC--CHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHH
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE--NEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAY  164 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~--d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~  164 (179)
                      +++|..     +.|++|++++-+|+++|++|+.+.|+-  .+...+++.++....++|.+..||..+.....+.++.
T Consensus         2 ~iLY~~-----~~S~~~~~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL   73 (85)
T d1r5aa2           2 TVLYYL-----PASPPCRSVLLLAKMIGVELDLKVLNIMEGEQLKPDFVELNPQHCIPTMDDHGLVLWESRVILSYL   73 (85)
T ss_dssp             EEEEEC-----TTCHHHHHHHHHHHHTTCCEEEEECCTTTTGGGSHHHHTTCTTCCSSEEEETTEEEECHHHHHHHH
T ss_pred             EEEEcC-----CCCHhHHHHHHHHHHcCCCCEEEEecCCCcccCCHHHHHHHhcCCCCEEEEcccceecHHHHHHHH
Confidence            688998     599999999999999999999988863  4555678888888889999999999999988888764

>d1axda2 c.47.1.5 (A:1-80) Class phi GST {Maize (Zea mays), type I [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class phi GST
species: Maize (Zea mays), type I [TaxId: 4577]

Probab=98.24  E-value=1.4e-06  Score=58.55  Aligned_cols=72  Identities=11%  Similarity=-0.012  Sum_probs=60.3

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCC--CHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE--NEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~--d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      ++.||+.     +.|++|.+++-+|+++|++|+.++|+-  .+....++.+++...++|.+..||..+.....+.++.+
T Consensus         2 p~~Ly~~-----~~S~~~~kv~~~L~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~YL~   75 (80)
T d1axda2           2 PMKLYGA-----VMSWNLTRCATALEEAGSDYEIVPINFATAEHKSPEHLVRNPFGQVPALQDGDLYLFESRAICKYAA   75 (80)
T ss_dssp             CEEEESC-----TTCTTHHHHHHHHHHHTCCEEEECCCTTTTGGGSHHHHTTCTTCCSCEEEETTEEEESHHHHHHHHH
T ss_pred             CEEEEEC-----CCChHHHHHHHHHHHcCCCCEEEEecCCccchhhHHHHHhhccccCCEEEECCEEEECHHHHHHHHH
Confidence            5789988     589999999999999999999988753  33445677888888999999999998988888877754

>d1ljra2 c.47.1.5 (A:1-79) Class theta GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class theta GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=2.1e-06  Score=57.11  Aligned_cols=71  Identities=14%  Similarity=0.083  Sum_probs=59.9

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCC--CHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE--NEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~--d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      +.||..     +.||+|++++-+|.++|++|+.++|+-  ++....++.+......+|.+..||..+.....+.++.+
T Consensus         3 m~LY~~-----~~sp~~r~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~np~g~vP~L~d~~~~l~ES~aI~~yL~   75 (79)
T d1ljra2           3 LELFLD-----LVSQPSRAVYIFAKKNGIPLELRTVDLVKGQHKSKEFLQINSLGKLPTLKDGDFILTESSAILIYLS   75 (79)
T ss_dssp             CEEEEC-----TTSHHHHHHHHHHHHTTCCCEEEECCTTTTGGGSHHHHTTCTTCCSCEEEETTEEEECHHHHHHHHH
T ss_pred             EEEeeC-----CCChHHHHHHHHHHHhCCCCEEEeeeccccccCCHHHHHhhhhcceeEEEeCCcEEEcHHHHHHHHH
Confidence            578887     699999999999999999999988753  34455678888889999999999999998888887754

>d1fw1a2 c.47.1.5 (A:5-87) Class zeta GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class zeta GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=4.2e-06  Score=56.42  Aligned_cols=70  Identities=17%  Similarity=0.185  Sum_probs=58.6

Q ss_pred             EEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCC----CHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327           91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE----NEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        91 vlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~----d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      +||..     +.|++|.+++-+|.++|++|+.+.|+-    .+....++.+.+...++|.+..||..+.....+.++.+
T Consensus         3 iLY~~-----~~S~~s~rvr~~L~ekgi~~e~~~v~l~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~i~eS~aI~~yL~   76 (83)
T d1fw1a2           3 ILYSY-----FRSSCSWRVRIALALKGIDYKTVPINLIKDGGQQFSKDFQALNPMKQVPTLKIDGITIHQSLAIIEYLE   76 (83)
T ss_dssp             EEEEC-----TTCHHHHHHHHHHHHTTCCCEEEECCSSTTSCGGGSHHHHHHCTTCCSCEEEETTEEEESHHHHHHHHH
T ss_pred             EEEcC-----CCChHHHHHHHHHHHhCCCCEEEeccccccccccCCHHHHHhccCCccCEEEECCEEEecHHHHHHHHH
Confidence            68888     589999999999999999999887742    23344667778888999999999999999988888754

>d1gnwa2 c.47.1.5 (A:2-85) Class phi GST {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class phi GST
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.15  E-value=2.1e-06  Score=58.09  Aligned_cols=71  Identities=14%  Similarity=0.107  Sum_probs=58.9

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCC--CHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE--NEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~--d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      +.+|..     +.|++|++++-+|.++|++|+.+.|+-  ++...+++.+.+...++|.+..||..+.....+.++.+
T Consensus         2 ~kLY~~-----~~s~~~~~v~~~l~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL~   74 (84)
T d1gnwa2           2 IKVFGH-----PASIATRRVLIALHEKNLDFELVHVELKDGEHKKEPFLSRNPFGQVPAFEDGDLKLFESRAITQYIA   74 (84)
T ss_dssp             EEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSTTGGGTCTTCCSCEEEETTEEEECHHHHHHHHH
T ss_pred             eEEEeC-----CCChHHHHHHHHHHHcCCCcEeecccCCcccccHHHHHHHhhcCcceEEEECCcEEecHHHHHHHHH
Confidence            578888     599999999999999999999888752  33444567777778899999999999998888887743

>d1jlva2 c.47.1.5 (A:1-84) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-3 [TaxId: 123217]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-3 [TaxId: 123217]

Probab=98.12  E-value=5.1e-06  Score=56.21  Aligned_cols=70  Identities=9%  Similarity=0.040  Sum_probs=58.2

Q ss_pred             EEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcC--CCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327           91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNIL--ENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        91 vlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~--~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      .+|..     +.|++|++++-+|.++|++|+.+.|+  .++....++.+++...++|.+..||..+-....+.++.+
T Consensus         2 kLY~~-----~~S~~~~~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~d~~~~l~ES~aI~~yL~   73 (84)
T d1jlva2           2 DFYYL-----PGSAPCRAVQMTAAAVGVELNLKLTNLMAGEHMKPEFLKINPQHCIPTLVDNGFALWESRAICTYLA   73 (84)
T ss_dssp             EEEEC-----TTCHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSHHHHHHCTTCCSCEEEETTEEEESHHHHHHHHH
T ss_pred             EEEcC-----CCCHHHHHHHHHHHHcCCCCEEEEecCCCCccCCHHHHHHhccccCCEEEECCEEEEcHHHHHHHHH
Confidence            47777     69999999999999999999998885  334445677788889999999999999988888777643

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=1.1e-05  Score=55.75  Aligned_cols=62  Identities=19%  Similarity=0.315  Sum_probs=44.5

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCEEEeec
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEFFGGC  157 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~~IGG~  157 (179)
                      ..|+|+...    +||+.|+.+...|.+.     ++.+..+|+++++++.+    ..|-..+|.+  |-||+.++.+
T Consensus        21 k~vvv~F~a----~wC~~C~~~~p~~~~l~~~~~~~~~~~vd~d~~~~~~~----~~~V~~~Pt~~~~~~G~~v~~~   89 (105)
T d2ifqa1          21 KLVVVDFSA----TWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVAS----ECEVKCMPTFQFFKKGQKVGEF   89 (105)
T ss_dssp             SCEEEEEEC----TTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHH----HTTCCBSSEEEEEETTEEEEEE
T ss_pred             CEEEEEEEc----CCccchhhhhhhhhhhccccccceeeecccccCHhHHH----HcCceEEEEEEEEECCEEEEEE
Confidence            346664443    6999999999988664     45578889988877644    3466778877  6799887543

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=98.07  E-value=5e-06  Score=57.68  Aligned_cols=66  Identities=12%  Similarity=0.202  Sum_probs=45.7

Q ss_pred             hhcCC-cEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CCEEE
Q 030327           84 VVTGN-KVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEFF  154 (179)
Q Consensus        84 li~~~-~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG~~I  154 (179)
                      +++.. +|+|+...    +||++|+++...|++.      .+.+..+|+++++++.+    ..+-..+|.+++  +|+.+
T Consensus        16 v~~~~~~vlv~f~a----~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~d~~~~l~~----~~~I~~~Pt~~~~~~g~~v   87 (108)
T d1thxa_          16 VLKAEQPVLVYFWA----SWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVK----KYKVEGVPALRLVKGEQIL   87 (108)
T ss_dssp             TTTCSSCEEEEEEC----TTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHHHHH----HTTCCSSSEEEEEETTEEE
T ss_pred             HHhCCCcEEEEEEC----CCCCCccccchHHHHHHHhcCCcceeceecccccHHHHH----HhcccCCCEEEEEECCEEE
Confidence            44443 46554444    6999999999998654      25688899988877643    346778888744  89866


Q ss_pred             eec
Q 030327          155 GGC  157 (179)
Q Consensus       155 GG~  157 (179)
                      +-+
T Consensus        88 ~~~   90 (108)
T d1thxa_          88 DST   90 (108)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=1.1e-05  Score=56.40  Aligned_cols=74  Identities=15%  Similarity=0.251  Sum_probs=49.5

Q ss_pred             CHHHHHHHHhhhcCCcEEE-EEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE
Q 030327           74 TPELKSTLDKVVTGNKVVL-FMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQL  147 (179)
Q Consensus        74 ~~~~~~~l~~li~~~~Vvl-ysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V  147 (179)
                      .++.++.+...- ...|+| |+.     +||+.|+++...|+++     ++.|-.+|+++++++.+.    .|-..+|.+
T Consensus         9 ~~~f~~~l~~~~-~klvvv~F~a-----~wC~~Ck~~~p~~~~la~~~~~~~f~~vd~d~~~~l~~~----~~v~~~Pt~   78 (107)
T d1gh2a_           9 DPDFQPELSGAG-SRLAVVKFTM-----RGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAAT----NNISATPTF   78 (107)
T ss_dssp             GGGHHHHHHHTT-TSCEEEEEEC-----SSCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHH----TTCCSSSEE
T ss_pred             HHHHHHHHHhCC-CCEEEEEEEC-----CCCCCccccchhhhccccccccccccccccccchhhhhh----cCceeceEE
Confidence            345555554322 223555 555     5999999999988654     567888999988776543    456667765


Q ss_pred             --eeCCEEEeec
Q 030327          148 --YIEGEFFGGC  157 (179)
Q Consensus       148 --fIdG~~IGG~  157 (179)
                        |-||+.++.+
T Consensus        79 ~~~~~G~~v~~~   90 (107)
T d1gh2a_          79 QFFRNKVRIDQY   90 (107)
T ss_dssp             EEEETTEEEEEE
T ss_pred             EEEECCEEEEEE
Confidence              7799887644

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.00  E-value=4.8e-07  Score=60.45  Aligned_cols=60  Identities=25%  Similarity=0.458  Sum_probs=41.0

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhc----C--CCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCC--EEEeec
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSL----N--APFETVNILENEMLRQGLKEYSSWPTFPQLYIEG--EFFGGC  157 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~----g--v~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG--~~IGG~  157 (179)
                      .|++|+.     +||++|+.+...+++.    +  +.+..+|.++++++    .+..|-..+|.+++++  +++|+.
T Consensus         5 ~v~~F~a-----~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~l----a~~~~V~~~Pt~~i~~~g~~~G~~   72 (85)
T d1fo5a_           5 KIELFTS-----PMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQK----AMEYGIMAVPTIVINGDVEFIGAP   72 (85)
T ss_dssp             EEEEEEC-----CCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCCT----TTSTTTCCSSEEEETTEEECCSSS
T ss_pred             EEEEEEC-----CCCcChHhhhhhccccccccccccccccccccccccc----cccCCceEeeEEEEECCcEEECCC
Confidence            4666777     5999999999888653    3  34556677666554    3456788899987754  555553

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=8.7e-06  Score=58.23  Aligned_cols=70  Identities=11%  Similarity=0.193  Sum_probs=47.3

Q ss_pred             cEEEEEeeCC---CCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHH---HHHHhcCCCCcceE--eeCCEEE
Q 030327           89 KVVLFMKGTK---DFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQ---GLKEYSSWPTFPQL--YIEGEFF  154 (179)
Q Consensus        89 ~Vvlysk~t~---~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~---~L~~~sg~~tvP~V--fIdG~~I  154 (179)
                      .|+||..++.   .++||++|+++...++++      ++.|..+|+++.++..+   .+.+..|-..+|++  |-+|+.+
T Consensus        23 ~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~~~~~~vdv~~~~~~~d~~~~l~~~~~V~~iPT~i~~~~g~~l  102 (119)
T d1woua_          23 TIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKNLKVTAVPTLLKYGTPQKL  102 (119)
T ss_dssp             EEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHHHHCCCSSSEEEETTSSCEE
T ss_pred             EEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCCceEEEEEECCCCcccchhhhhHHHhCCeEEEEEEEEEECCeEE
Confidence            5777776532   346999999999999765      24467778865444332   35555688889986  4477777


Q ss_pred             eecH
Q 030327          155 GGCD  158 (179)
Q Consensus       155 GG~d  158 (179)
                      .+.+
T Consensus       103 ~~~~  106 (119)
T d1woua_         103 VESE  106 (119)
T ss_dssp             EGGG
T ss_pred             eeee
Confidence            7654

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=97.96  E-value=6.7e-06  Score=56.89  Aligned_cols=64  Identities=19%  Similarity=0.292  Sum_probs=42.4

Q ss_pred             hhcCCc-EEEEEeeCCCCCCCchHHHHHHHHHhc----C--CCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCEEE
Q 030327           84 VVTGNK-VVLFMKGTKDFPQCGFSHTVVQILKSL----N--APFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEFF  154 (179)
Q Consensus        84 li~~~~-Vvlysk~t~~~p~Cp~C~~ak~lL~~~----g--v~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~~I  154 (179)
                      +++.++ |+|+...    +||++|+.+...+.+.    +  +.+..+|+++++.+    .+..|-..+|.+  |.+|+.+
T Consensus        16 v~~~~~~v~v~F~a----~wC~~C~~~~~~~~~~a~~~~~~~~~~~vd~d~~~~l----~~~~~v~~~PT~~~~~~G~~v   87 (108)
T d2trxa_          16 VLKADGAILVDFWA----EWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT----APKYGIRGIPTLLLFKNGEVA   87 (108)
T ss_dssp             TTTCSSEEEEEEEC----TTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTTH----HHHTTCCSSSEEEEEETTEEE
T ss_pred             HHhCCCcEEEEEEC----CCCCCccccCcHHHHHHHHhhcceeeeeccccchhhH----HHHhCCCcEEEEEEEECCEEE
Confidence            444444 6665554    7999999988877543    3  34667788877654    344566778876  5689866


Q ss_pred             e
Q 030327          155 G  155 (179)
Q Consensus       155 G  155 (179)
                      +
T Consensus        88 ~   88 (108)
T d2trxa_          88 A   88 (108)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.92  E-value=3.1e-05  Score=53.85  Aligned_cols=73  Identities=22%  Similarity=0.244  Sum_probs=46.1

Q ss_pred             HHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc----C--CCeEEEEcCCCHHHHHHHHHhcCCCCcceE--
Q 030327           76 ELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL----N--APFETVNILENEMLRQGLKEYSSWPTFPQL--  147 (179)
Q Consensus        76 ~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~----g--v~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--  147 (179)
                      +.+..+.+. ....|+|+...    +||+.|++.+..|+++    +  +.+..+|+++++++.    +..|-..+|.+  
T Consensus        15 ~~~~~l~~~-~~k~vlv~f~a----~wC~~C~~~~p~~~~l~~~~~~~~~~~~i~~d~~~~l~----~~~~V~~~Pt~~~   85 (111)
T d1xwaa_          15 DLDGQLTKA-SGKLVVLDFFA----TWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIA----MEYNISSMPTFVF   85 (111)
T ss_dssp             HHHHHHHHH-TTSEEEEEEEC----TTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHH----HHTTCCSSSEEEE
T ss_pred             HHHHHHHhc-CCCEEEEEEEC----CcccCccccchhHHHHhhhcccceEEEEEEeecCcchh----hcCCCccccEEEE
Confidence            344444443 23445554443    6999999999988665    2  346677777776543    34566677766  


Q ss_pred             eeCCEEEeec
Q 030327          148 YIEGEFFGGC  157 (179)
Q Consensus       148 fIdG~~IGG~  157 (179)
                      |-||+.+..+
T Consensus        86 ~~~G~~v~~~   95 (111)
T d1xwaa_          86 LKNGVKVEEF   95 (111)
T ss_dssp             EETTEEEEEE
T ss_pred             EECCEEEEEE
Confidence            5688776543

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=1.4e-05  Score=58.74  Aligned_cols=67  Identities=13%  Similarity=0.090  Sum_probs=47.3

Q ss_pred             HHHhhhcC--C-cEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--e
Q 030327           80 TLDKVVTG--N-KVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQL--Y  148 (179)
Q Consensus        80 ~l~~li~~--~-~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--f  148 (179)
                      .+++++..  + .|+|+...    +||+.|+++..+|.++      .+.+..+|+++++++.    +..+-..+|++  |
T Consensus        12 ~~dq~i~~~~~k~vvv~F~a----~wC~~C~~~~p~l~~la~~~~~~v~~~~VDvd~~~~la----~~~~I~~~PT~~~f   83 (137)
T d1qgva_          12 QVDQAILSEEDRVVVIRFGH----DWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFN----KMYELYDPCTVMFF   83 (137)
T ss_dssp             HHHHHHHTCSSSEEEEEEEC----TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTT----TSSCSCSSCEEEEE
T ss_pred             HHHHHHHhCCCCEEEEEEEC----CCCccchhcChHHHHHHHHhhccceEEEeeccccchhh----hhcCeeeEEEEEEE
Confidence            35555543  2 35553443    7999999999999765      2578889998887643    44566678877  8


Q ss_pred             eCCEEE
Q 030327          149 IEGEFF  154 (179)
Q Consensus       149 IdG~~I  154 (179)
                      .+|+++
T Consensus        84 ~~g~~i   89 (137)
T d1qgva_          84 FRNKHI   89 (137)
T ss_dssp             ETTEEE
T ss_pred             eCCcEE
Confidence            899987

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.90  E-value=5.2e-05  Score=53.08  Aligned_cols=74  Identities=15%  Similarity=0.212  Sum_probs=50.1

Q ss_pred             HHHHhhhcCC-cEEEEEeeCCCCCCCchHHHHHHHHHh----cCCCeEEEEcCC--CHHHHHHHHHhcCCCCcceE--ee
Q 030327           79 STLDKVVTGN-KVVLFMKGTKDFPQCGFSHTVVQILKS----LNAPFETVNILE--NEMLRQGLKEYSSWPTFPQL--YI  149 (179)
Q Consensus        79 ~~l~~li~~~-~Vvlysk~t~~~p~Cp~C~~ak~lL~~----~gv~y~~vdV~~--d~~~~~~L~~~sg~~tvP~V--fI  149 (179)
                      +.++++++++ .++||...    +|||+|+++...|.+    .+.....++++.  +.+..+.+.+..|..++|.+  |-
T Consensus        17 ~~~~~~i~~~~~~~v~f~~----~~C~~C~~~~p~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~V~~~PTli~~~   92 (115)
T d1zmaa1          17 VRAQEALDKKETATFFIGR----KTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPGFVHIT   92 (115)
T ss_dssp             HHHHHHHHTTCCEEEEEEC----TTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSSCEEEEEE
T ss_pred             HHHHHHHhcCCCEEEEEcC----CCCccHHHHHHHHHHHHHHhhhhhhhheeecccccccccccccccccccccEEEEEE
Confidence            3455555554 46666654    799999999988854    466777888864  34444456666688999998  44


Q ss_pred             CCEEEee
Q 030327          150 EGEFFGG  156 (179)
Q Consensus       150 dG~~IGG  156 (179)
                      ||+.+.-
T Consensus        93 ~gk~~~~   99 (115)
T d1zmaa1          93 DGQINVR   99 (115)
T ss_dssp             TTEEEEE
T ss_pred             CCEEEEE
Confidence            7876643

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=97.88  E-value=4.4e-05  Score=52.57  Aligned_cols=59  Identities=14%  Similarity=0.255  Sum_probs=41.8

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCEEEe
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEFFG  155 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~~IG  155 (179)
                      +|+|+...    +||++|+++...+.+.      .+.+..+|++.++++.+.    .+-..+|.+  |.||+.++
T Consensus        21 pvlv~F~a----~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~d~~~~l~~~----~~V~~~Pt~~~~~~G~~v~   87 (107)
T d1dbya_          21 PVLVDFWA----PWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASE----YGIRSIPTIMVFKGGKKCE   87 (107)
T ss_dssp             CEEEEEEC----TTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHH----HTCCSSCEEEEESSSSEEE
T ss_pred             cEEEEEEC----CCCCCccccChHHHHHHHhhcccceEEEEecccchhHHHH----hcccceEEEEEEECCeEEE
Confidence            46665554    7999999999887554      345788899888765443    455667766  56887765

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=97.81  E-value=6.3e-05  Score=51.55  Aligned_cols=68  Identities=18%  Similarity=0.313  Sum_probs=47.7

Q ss_pred             HHhhhcCC-cEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCC
Q 030327           81 LDKVVTGN-KVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEG  151 (179)
Q Consensus        81 l~~li~~~-~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG  151 (179)
                      ++++++++ +|+|+...    +||++|+.+...|.+.      ++.+..+|++.++++.+.    .+-..+|.+  |.+|
T Consensus        10 f~~~i~~~k~vvv~F~a----~wC~~C~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~----~~V~~~Pt~~~~~~G   81 (105)
T d1nw2a_          10 FQQAIQGDKPVLVDFWA----AWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQ----FGIMSIPTLILFKGG   81 (105)
T ss_dssp             HHHHTTSSSCEEEEEEC----TTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHH----TTCCBSSEEEEEETT
T ss_pred             HHHHHhCCCcEEEEEEC----CCCCCcccccchhhhhhhhcCCceEEEEEECCCCcccHHH----CCcceeeEEEEEECC
Confidence            34455554 45555554    7999999999988664      477889999888776443    455667766  6799


Q ss_pred             EEEee
Q 030327          152 EFFGG  156 (179)
Q Consensus       152 ~~IGG  156 (179)
                      +.++-
T Consensus        82 ~~~~~   86 (105)
T d1nw2a_          82 EPVKQ   86 (105)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            87643

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=97.80  E-value=4.4e-05  Score=53.61  Aligned_cols=60  Identities=22%  Similarity=0.279  Sum_probs=41.4

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCC-CHHHHHHHHHhcCCCCcceE--eeCCEEEe
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILE-NEMLRQGLKEYSSWPTFPQL--YIEGEFFG  155 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~-d~~~~~~L~~~sg~~tvP~V--fIdG~~IG  155 (179)
                      ..|+|+...    +||++|+.+...|+++     ++.+..+|+++ ++++.    +..|-..+|.+  |-||+.+.
T Consensus        26 k~vvv~f~a----~wC~~C~~~~p~~~~l~~~~~~v~~~~vd~~~~~~~l~----~~~~V~~~Pt~~~~k~G~~v~   93 (112)
T d1f9ma_          26 KPVVLDMFT----QWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLA----KELGIRVVPTFKILKENSVVG   93 (112)
T ss_dssp             SCEEEEEEC----TTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTHHHH----HHHCCSSSSEEEEEETTEEEE
T ss_pred             CEEEEEEEc----CCCcchHHHHHHHhhhccccccceeecccccccchhhH----hheeeccCCEEEEEECCEEEE
Confidence            346665554    7999999999988764     55677788864 55553    33466677776  55998764

>d2a2ra2 c.47.1.5 (A:1-77) Class pi GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class pi GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=7.4e-05  Score=48.97  Aligned_cols=72  Identities=8%  Similarity=0.063  Sum_probs=56.3

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      ++.+|..     +.++.|+.++-+|...|++|+.+.++................++|++..||..|.....+.++..
T Consensus         2 ~~~L~yf-----~~~g~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~p~g~vP~L~~~g~~i~eS~aI~~yLa   73 (77)
T d2a2ra2           2 PYTVVYF-----PVRGRCAALRMLLADQGQSWKEEVVTVETWQEGSLKASCLYGQLPKFQDGDLTLYQSNTILRHLG   73 (77)
T ss_dssp             SEEEEEC-----SSSGGGHHHHHHHHHTTCCEEEEECCHHHHHHSHHHHHSTTSCSCEEEETTEEEECHHHHHHHHH
T ss_pred             CEEEEEc-----CCchhHHHHHHHHHHcCCCcEEEEecccccccccccccCCCCCCCEEEECCEeeecHHHHHHHHH
Confidence            4667666     37889999999999999999999997544333344444556789999999999999888877643

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=97.76  E-value=8.3e-05  Score=50.76  Aligned_cols=61  Identities=16%  Similarity=0.244  Sum_probs=42.3

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCEEEee
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEFFGG  156 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~~IGG  156 (179)
                      .+|+|+..+    +||++|+++...+.+.      .+.+..+|+++++++.+    ..|-..+|.+  |.||+.++.
T Consensus        18 ~~vlv~F~a----~wC~~C~~~~~~~~~l~~~~~~~~~~~~v~~d~~~~l~~----~~~V~~~Pt~~~~~~G~~v~~   86 (104)
T d1fb6a_          18 VPVMVDFWA----PWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIAT----QYNIRSIPTVLFFKNGERKES   86 (104)
T ss_dssp             SCEEEEEEC----TTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHH----HTTCCSSSEEEEEETTEEEEE
T ss_pred             CcEEEEEEc----CccCCccccCchhHHHHHhhcCccceeEEecccchhhhh----hcceeeeeEEEEEEcCeEEEE
Confidence            346665554    6999999999988664      23467778888776543    4466677776  678876653

>d2cvda2 c.47.1.5 (A:2-75) Class sigma GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class sigma GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=0.00023  Score=46.52  Aligned_cols=70  Identities=14%  Similarity=0.132  Sum_probs=56.7

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      .+.||..     +.++.|+.++-+|...|++|+.+++..+.  ..+.++.....++|.+..||..+.....+.++..
T Consensus         2 ~~kL~yf-----~~~~~~~~vRl~L~~~gi~~e~~~~~~~~--~~~~~~~~p~g~vP~L~~~g~~l~qS~AI~~yLa   71 (74)
T d2cvda2           2 NYKLTYF-----NMRGRAEIIRYIFAYLDIQYEDHRIEQAD--WPEIKSTLPFGKIPILEVDGLTLHQSLAIARYLT   71 (74)
T ss_dssp             CEEEEEE-----SSSGGGHHHHHHHHHTTCCCEEEEECGGG--HHHHHTTSTTSCSCEEEETTEEEECHHHHHHHHH
T ss_pred             cEEEEEc-----CCcHHHHHHHHHHHHcCCCCEeccccccc--chhhcccCCCCCcCEEEECCEEEEcHHHHHHHHc
Confidence            4667777     37899999999999999999999886543  2445556678899999999999999888887754

>d1z3ea1 c.47.1.12 (A:1-114) Regulatory protein Spx {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ArsC-like
domain: Regulatory protein Spx
species: Bacillus subtilis [TaxId: 1423]

Probab=97.55  E-value=3.7e-05  Score=54.62  Aligned_cols=35  Identities=26%  Similarity=0.467  Sum_probs=32.0

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCH
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENE  129 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~  129 (179)
                      |++|..     |.|.-|++++++|++.|++|+.+|+.+++
T Consensus         2 i~ly~~-----~~C~~~rka~~~L~~~~i~~~~~d~~~~p   36 (114)
T d1z3ea1           2 VTLYTS-----PSCTSCRKARAWLEEHEIPFVERNIFSEP   36 (114)
T ss_dssp             EEEEEC-----TTCHHHHHHHHHHHHTTCCEEEEETTTSC
T ss_pred             EEEEcC-----CCCHHHHHHHHHHHHCCCCeEEEeeeccC
Confidence            578998     69999999999999999999999997763

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.48  E-value=0.00027  Score=51.98  Aligned_cols=39  Identities=18%  Similarity=0.152  Sum_probs=25.8

Q ss_pred             HHHHhcCCCCcceEee-CCEEEeec---HHHHHHHHcccHHHHHHhhh
Q 030327          134 GLKEYSSWPTFPQLYI-EGEFFGGC---DITVEAYKNGELQELLEKAL  177 (179)
Q Consensus       134 ~L~~~sg~~tvP~VfI-dG~~IGG~---del~~l~~~GeL~~~L~~a~  177 (179)
                      .+....|....|.+|+ ||+.+-|+   +++.++     |++.++.++
T Consensus       112 ~la~~lgv~GTPt~~~~nG~~v~G~~~~e~l~~~-----i~~~~k~~~  154 (156)
T d1eeja1         112 ALGVQLGVSGTPAVVLSNGTLVPGYQPPKEMKEF-----LDEHQKMTS  154 (156)
T ss_dssp             HHHHHHTCCSSSEEECTTSCEEESCCCHHHHHHH-----HHHHHHHHH
T ss_pred             HHHHHcCCcCCCEEEEeCCeEecCCCCHHHHHHH-----HHHHHHHhc
Confidence            3344458899999877 89999886   455554     445554443

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.34  E-value=0.00042  Score=48.47  Aligned_cols=65  Identities=20%  Similarity=0.357  Sum_probs=42.7

Q ss_pred             HHhhhcCCc-EEEEEeeCCCCCCCchHHHHHHHHHhc-------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--C
Q 030327           81 LDKVVTGNK-VVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--E  150 (179)
Q Consensus        81 l~~li~~~~-Vvlysk~t~~~p~Cp~C~~ak~lL~~~-------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--d  150 (179)
                      .++++++++ ++|+...    +||++|+++...++++       ++.+..+|++.+.++    ....+..++|.+++  +
T Consensus        20 f~~~i~~~~~~lV~fya----~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~~~~l----~~~~~v~~~Pti~~f~~   91 (119)
T d2b5ea4          20 FNEYIQSHDLVLAEFFA----PWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDL----CMEHNIPGFPSLKIFKN   91 (119)
T ss_dssp             HHHHHTTCSEEEEEEEC----TTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHH----HHHTTCCSSSEEEEEET
T ss_pred             HHHHHhcCCeEEEEEEC----CccCcccccchhhhhhhhhhcccceeeeeeeccchHHH----HHHhccccCCeEEEEEC
Confidence            444554543 4444444    7999999988877543       366888899877654    33446678888844  7


Q ss_pred             CEE
Q 030327          151 GEF  153 (179)
Q Consensus       151 G~~  153 (179)
                      |+.
T Consensus        92 g~~   94 (119)
T d2b5ea4          92 SDV   94 (119)
T ss_dssp             TCT
T ss_pred             CEE
Confidence            743

>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ArsC-like
domain: Hypothetical protein PA3664 (YffB)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.34  E-value=3.9e-05  Score=54.37  Aligned_cols=33  Identities=12%  Similarity=0.174  Sum_probs=30.6

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCC
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE  127 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~  127 (179)
                      ++||+.     |.|.-|++++++|++.|++|+.+|+.+
T Consensus         2 ~~iY~~-----p~Cs~srka~~~L~~~~i~~~~idy~k   34 (114)
T d1rw1a_           2 YVLYGI-----KACDTMKKARTWLDEHKVAYDFHDYKA   34 (114)
T ss_dssp             EEEEEC-----SSCHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred             EEEEEC-----CCChHHHHHHHHHHHcCCCeEEEEccc
Confidence            789999     699999999999999999999999843

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=97.30  E-value=0.0001  Score=53.63  Aligned_cols=54  Identities=9%  Similarity=0.164  Sum_probs=37.5

Q ss_pred             CCCCchHHHHHHHHHhc-----CCCeE--EEEcCCCHHHHHHHHHhcCCCCcceE--eeCCEEEeec
Q 030327          100 FPQCGFSHTVVQILKSL-----NAPFE--TVNILENEMLRQGLKEYSSWPTFPQL--YIEGEFFGGC  157 (179)
Q Consensus       100 ~p~Cp~C~~ak~lL~~~-----gv~y~--~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~~IGG~  157 (179)
                      ++|||.|..+..+|.++     +..+.  .+|++++    .++.+.+|-..+|.+  |-||+.++.+
T Consensus        45 a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d~~----~~la~~~~V~~~PT~~~~~~G~~v~~~  107 (132)
T d2hfda1          45 PKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQS----EAIGDRFGVFRFPATLVFTGGNYRGVL  107 (132)
T ss_dssp             CSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHHHH----HHHHHHHTCCSCCEEEEEETTEEEEEE
T ss_pred             CCCChhHHHHHHHHHHHHHHccCCcceeEEEEecCC----HHHHHhhccCcceeEEEEEcCcEeeee
Confidence            47999999999988775     23343  4454333    455556677888876  5599988765

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.18  E-value=5.8e-05  Score=56.14  Aligned_cols=72  Identities=11%  Similarity=0.092  Sum_probs=46.8

Q ss_pred             cCCHHHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcce
Q 030327           72 ALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQ  146 (179)
Q Consensus        72 ~~~~~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~  146 (179)
                      ...++..++++.+-....+++|..     +|||+|++....|.++     ++.+..++++.+++..+..... +...+|.
T Consensus        40 ~l~~~~~~~l~~~~~~~~~l~~~~-----tWC~~C~~~~P~l~~l~~~~~~~~~~~i~~d~~~~~~~~~~~~-~~~~~p~  113 (166)
T d1z6na1          40 GLPSALTERLQRIERRYRLLVAGE-----MWCPDCQINLAALDFAQRLQPNIELAIISKGRAEDDLRQRLAL-ERIAIPL  113 (166)
T ss_dssp             CCCHHHHHHHHTCCSCEEEEEECC-----TTCHHHHHHHHHHHHHHHHCTTEEEEEECHHHHHHHTTTTTTC-SSCCSSE
T ss_pred             cccHHHHHHHHHhcCCeEEEEEEe-----CcCccHHHHHHHHHHHHHHCCCCcEEEEECccCHHHHHHHHHh-ccccccc
Confidence            456677777776655556777776     5999999999998765     3557777776555443333322 4455555


Q ss_pred             Eee
Q 030327          147 LYI  149 (179)
Q Consensus       147 VfI  149 (179)
                      +++
T Consensus       114 ~~~  116 (166)
T d1z6na1         114 VLV  116 (166)
T ss_dssp             EEE
T ss_pred             eee
Confidence            544

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=97.18  E-value=0.00083  Score=46.25  Aligned_cols=68  Identities=19%  Similarity=0.238  Sum_probs=43.1

Q ss_pred             HHHHHHHhhhcCCcEEEEEeeCCCCCCCchHHHHHHHH-------Hhc-CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE
Q 030327           76 ELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQIL-------KSL-NAPFETVNILENEMLRQGLKEYSSWPTFPQL  147 (179)
Q Consensus        76 ~~~~~l~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL-------~~~-gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V  147 (179)
                      +.+..+.+. +..+|+|+...    +||++|+.....+       +.. ++....+|+..+.+....+.+..|...+|.+
T Consensus        12 ~~~~~l~~~-~gK~vlv~F~a----~wC~~C~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~   86 (117)
T d2fwha1          12 ELNQALVEA-KGKPVMLDLYA----DWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLGLPTI   86 (117)
T ss_dssp             HHHHHHHHH-TTSCEEEEEEC----TTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHTTCCSSSEE
T ss_pred             HHHHHHHHc-CCCeEEEEEec----ccCCcccccchhHHhHHHHHHhccceEEEecccccchhHHHHHHhhhehhhceEE
Confidence            444444443 34467776665    6999999987654       212 3345667776666555666666688888887


Q ss_pred             e
Q 030327          148 Y  148 (179)
Q Consensus       148 f  148 (179)
                      +
T Consensus        87 ~   87 (117)
T d2fwha1          87 L   87 (117)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.10  E-value=9.5e-05  Score=52.67  Aligned_cols=55  Identities=9%  Similarity=0.112  Sum_probs=30.4

Q ss_pred             CCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCEEEeec
Q 030327          101 PQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEFFGGC  157 (179)
Q Consensus       101 p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~~IGG~  157 (179)
                      +|||.|+.+..+|.++     +.++....|+  -+...++.+..|...+|.+  |.||+.++..
T Consensus        40 ~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd--~d~~~~l~~~~~V~~~Pt~~~~~~G~~v~~~  101 (119)
T d2es7a1          40 RRTPEVSDNPVMIAELLREFPQFDWQVAVAD--LEQSEAIGDRFNVRRFPATLVFTDGKLRGAL  101 (119)
T ss_dssp             CC----CCHHHHHHHHHHTCTTSCCEEEEEC--HHHHHHHHHTTTCCSSSEEEEESCC----CE
T ss_pred             CCCccHHHHHHHHHHHHHhcCCCceEEEEEE--CCCCHHHHHhcCcCcceEEEEEEcCeEEEEe
Confidence            6999999999999775     3344433332  2233456666788889987  5588777544

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.96  E-value=0.00098  Score=44.43  Aligned_cols=55  Identities=22%  Similarity=0.369  Sum_probs=41.4

Q ss_pred             cEEEEEeeCCCCCCCchHHHHH----HHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEE
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVV----QILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFF  154 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak----~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~I  154 (179)
                      +|.+|+.      +|+.|.++.    +.++++|++.+..+|.+-++    +.+ +|--++|.+.|||+.+
T Consensus         3 ~IkVlg~------gC~~C~~~~~~v~~a~~e~gi~a~v~kv~d~~e----i~~-ygVmstPalvIdg~vv   61 (77)
T d1iloa_           3 KIQIYGT------GCANCQMLEKNAREAVKELGIDAEFEKIKEMDQ----ILE-AGLTALPGLAVDGELK   61 (77)
T ss_dssp             EEEEECS------SSSTTHHHHHHHHHHHHHTTCCEEEEEECSHHH----HHH-HTCSSSSCEEETTEEE
T ss_pred             EEEEeCC------CCccHHHHHHHHHHHHHHcCCceEEEEeCCHHH----HHH-cCCcCCCEEEECCEEE
Confidence            4677743      899999554    45788999999888843222    334 4889999999999876

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.00017  Score=50.34  Aligned_cols=49  Identities=18%  Similarity=0.365  Sum_probs=32.6

Q ss_pred             CCCchHHHHHHHHHhc---------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCEE
Q 030327          101 PQCGFSHTVVQILKSL---------NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEF  153 (179)
Q Consensus       101 p~Cp~C~~ak~lL~~~---------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~~  153 (179)
                      +||++|+++...+.+.         .+.+..+|++.+..+.+.    .+...+|.+  |.+|+.
T Consensus        34 ~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~----~~i~~~Pt~~~~~~G~~   93 (120)
T d1meka_          34 PWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQ----YGVRGYPTIKFFRNGDT   93 (120)
T ss_dssp             SSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHH----HTCCSSSEEEEEESSCS
T ss_pred             CCcCCccccchhhhhhcccccccccceeeeccccccchhHHHH----hCCccCCeEEEEECCeE
Confidence            6999999887666442         255778888777655443    356677865  457743

>d2gsqa2 c.47.1.5 (A:1-75) Class sigma GST {Squid (Ommastrephes sloani pacificus) [TaxId: 6634]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class sigma GST
species: Squid (Ommastrephes sloani pacificus) [TaxId: 6634]

Probab=96.89  E-value=0.0026  Score=41.34  Aligned_cols=70  Identities=16%  Similarity=0.091  Sum_probs=54.5

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      +..||...     .-+.|+.++-+|...|++|+.+.++.+..  ...+......++|.+.+||..|.....+.++..
T Consensus         2 ~~~L~yf~-----~~g~~~~iRl~L~~~gi~ye~~~~~~~~~--~~~~~~~p~g~lPvL~~~g~~i~eS~aI~~yL~   71 (75)
T d2gsqa2           2 KYTLHYFP-----LMGRAELCRFVLAAHGEEFTDRVVEMADW--PNLKATMYSNAMPVLDIDGTKMSQSMCIARHLA   71 (75)
T ss_dssp             CEEEEECS-----SSGGGHHHHHHHHHTTCCCEEEECCTTTH--HHHGGGSGGGSSCEEEETTEEECCHHHHHHHHH
T ss_pred             CEEEEecC-----CchhHHHHHHHHHHcCCCchhhccccccc--hhhhhccccCCcCEEEECCeeeecHHHHHHHHH
Confidence            45666663     56799999999999999999999865532  344555566789999999999999888877653

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.89  E-value=0.00092  Score=48.79  Aligned_cols=25  Identities=24%  Similarity=0.258  Sum_probs=19.3

Q ss_pred             HHHHhcCCCCcceEee-CCEEEeecH
Q 030327          134 GLKEYSSWPTFPQLYI-EGEFFGGCD  158 (179)
Q Consensus       134 ~L~~~sg~~tvP~VfI-dG~~IGG~d  158 (179)
                      .+.+..|....|.+|+ ||+.|-|+-
T Consensus       112 ~la~~lGv~GTPt~~~~nG~~i~G~~  137 (150)
T d1t3ba1         112 ELGIQFGVRGTPSIVTSTGELIGGYL  137 (150)
T ss_dssp             HHHHHHTCCSSCEEECTTSCCCCSCC
T ss_pred             HHHHhcCcCCCCEEEEcCCcEecCCC
Confidence            3344569999999877 899998863

>d1gula2 c.47.1.5 (A:4-80) Class alpha GST {Human (Homo sapiens), (a1-1) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Human (Homo sapiens), (a1-1) [TaxId: 9606]

Probab=96.88  E-value=0.0017  Score=42.21  Aligned_cols=64  Identities=14%  Similarity=0.073  Sum_probs=48.2

Q ss_pred             CCchHHHHHHHHHhcCCCeEEEEcCCCHHHH-HHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327          102 QCGFSHTVVQILKSLNAPFETVNILENEMLR-QGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus       102 ~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~-~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      ..+.|..++-+|...|++|+.+.++..+... ..........++|.+..||..+.....+.++..
T Consensus         9 ~~g~~~~vR~~L~~~gi~ye~~~~~~~~~~~~~~~~~~~p~g~lPvL~~~g~~l~eS~AI~~yLa   73 (77)
T d1gula2           9 GRGRMESVRWVLAAAGVEFDEEFLETKEQLYKLQDGNHLLFQQVPMVEIDGMKLVQTRSILHYIA   73 (77)
T ss_dssp             SCTTTHHHHHHHHHTTCCCEEEEECSHHHHHHHHHTTCSTTSCSCEEEETTEEEESHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHcCCCceEEeeccccccchhhhcccCCCCCCCEEEECCEeeecHHHHHHHHH
Confidence            5688999999999999999988886443322 222223446789999999999988887777643

>d1j9ba_ c.47.1.12 (A:) Arsenate reductase ArsC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ArsC-like
domain: Arsenate reductase ArsC
species: Escherichia coli [TaxId: 562]

Probab=96.69  E-value=0.00039  Score=50.86  Aligned_cols=34  Identities=21%  Similarity=0.532  Sum_probs=31.5

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN  128 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d  128 (179)
                      |+||..     |.|.-|+++++||++.|++|+.+|+.++
T Consensus         2 i~iY~~-----p~Cs~srkal~~L~~~~i~~~~idy~k~   35 (138)
T d1j9ba_           2 ITIYHN-----PACGTSRNTLEMIRNSGTEPTIILYLEN   35 (138)
T ss_dssp             CEEECC-----TTCHHHHHHHHHHHHTTCCCEEECTTTS
T ss_pred             eEEEEC-----CCCHHHHHHHHHHHHCCCCeEEEeeccC
Confidence            688988     7999999999999999999999998765

>d1b48a2 c.47.1.5 (A:2-79) Class alpha GST {Mouse (Mus musculus), (a1-4) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Mouse (Mus musculus), (a1-4) [TaxId: 10090]

Probab=96.63  E-value=0.00099  Score=43.61  Aligned_cols=72  Identities=14%  Similarity=0.117  Sum_probs=51.7

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHH-HHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLR-QGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~-~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      +.++|..     +..+.|+.++-+|...|++|+.+.++...... ..........++|.+..||..+.....+.++..
T Consensus         3 K~kL~yf-----~~~~~~~~vR~~L~~~gi~ye~~~~~~~~~~~~~~~~~~~p~g~lPvL~~~g~~l~eS~AI~rYLa   75 (78)
T d1b48a2           3 KPKLYYF-----NGRGRMESIRWLLAAAGVEFEEEFLETREQYEKMQKDGHLLFGQVPLVEIDGMMLTQTRAILSYLA   75 (78)
T ss_dssp             CCEEEBC-----SSCTTTHHHHHHHHHHTCCCCCCBCCCHHHHHHHHTTTCSSSSCSCEEEETTEEECCHHHHHHHHH
T ss_pred             CcEEEEc-----CCchHHHHHHHHHHHcCCCcEEEEEcchhhhcchhhcccccCCCCCEEEeCCeEEECHHHHHHHHH
Confidence            3455555     36789999999999999999988886443222 222223345689999999999998887777643

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=96.58  E-value=0.003  Score=44.90  Aligned_cols=38  Identities=16%  Similarity=0.216  Sum_probs=25.1

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc----CCCeEEEEcCCC
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL----NAPFETVNILEN  128 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~----gv~y~~vdV~~d  128 (179)
                      ...++|+..+    .||+.|+.....|+++    ++.+..+.+..+
T Consensus        31 gK~vll~fwa----~wC~~C~~~~p~l~~l~~~~~~~~~~i~~~~~   72 (144)
T d1knga_          31 GKVSLVNVWA----SWCVPCHDEAPLLTELGKDKRFQLVGINYKDA   72 (144)
T ss_dssp             TSCEEEEEEC----TTCHHHHHHHHHHHHHTTCTTSEEEEEEESCC
T ss_pred             CCEEEEEeec----cccccccccCchhhhhhhccCceeEEEEeeec
Confidence            3456665555    5999999988888765    344455555444

>d1m0ua2 c.47.1.5 (A:47-122) Class sigma GST {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class sigma GST
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.49  E-value=0.0076  Score=39.16  Aligned_cols=70  Identities=16%  Similarity=0.177  Sum_probs=53.7

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHH
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAY  164 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~  164 (179)
                      +...||...     ..+.+..++-+|...|++|+.+.++.+.  ..+.+......++|.+.+||..+.....+.++.
T Consensus         2 ~s~kL~Yf~-----~~g~~e~iRl~L~~~gi~yed~~~~~~~--~~~~~~~~p~g~lP~l~~~g~~l~qS~aI~~YL   71 (76)
T d1m0ua2           2 HSYTLFYFN-----VKALAEPLRYLFAYGNQEYEDVRVTRDE--WPALKPTMPMGQMPVLEVDGKRVHQSISMARFL   71 (76)
T ss_dssp             CCEEEEEES-----SSGGGHHHHHHHHHHTCCCEEEEECTTT--HHHHGGGSGGGCSCEEEETTEEEECHHHHHHHH
T ss_pred             ccEEEEecC-----CchHHHHHHHHHHHcCCCCEEecCChhh--hhhhhccCcCCCCcEEEECCcccccHHHHHHHH
Confidence            345666653     5678999999999999999999886542  234455556678999999999999988887764

>d1okta2 c.47.1.5 (A:1-85) Pf GST {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Pf GST
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.44  E-value=0.014  Score=38.02  Aligned_cols=72  Identities=15%  Similarity=0.201  Sum_probs=52.5

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC--HH-HHHHHH--HhcCCCCcceEeeCCEEEeecHHHHH
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN--EM-LRQGLK--EYSSWPTFPQLYIEGEFFGGCDITVE  162 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d--~~-~~~~L~--~~sg~~tvP~VfIdG~~IGG~del~~  162 (179)
                      .++++|...     ..+.++.++-+|...|++|+.+.++-+  .. ..+...  ...-..++|.+..||..+.....+..
T Consensus         3 ~~i~L~Y~~-----~~gr~e~irl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~~p~g~lP~l~~~g~~l~eS~AI~~   77 (85)
T d1okta2           3 DNIVLYYFD-----ARGKAELIRLIFAYLGIEYTDKRFGVNGDAFVEFKNFKKEKDTPFEQVPILQIGDLILAQSQAIVR   77 (85)
T ss_dssp             CCEEEEEES-----SSTTTHHHHHHHHHHTCCCEEEEETSSSCHHHHHHHHHHHSCCSSSCSCEEEETTEEEECHHHHHH
T ss_pred             CCeEEEEcC-----CchhhHHHHHHHHHcCCCceEEEEcccccchhhhhhhhhcccccCCCCCeeecCCCEEecHHHHHH
Confidence            467887663     567899999999999999998887643  22 222222  22346789999999999998887776


Q ss_pred             HH
Q 030327          163 AY  164 (179)
Q Consensus       163 l~  164 (179)
                      +.
T Consensus        78 yL   79 (85)
T d1okta2          78 YL   79 (85)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.42  E-value=0.0071  Score=42.15  Aligned_cols=39  Identities=21%  Similarity=0.368  Sum_probs=25.3

Q ss_pred             cCCcEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCC
Q 030327           86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILEN  128 (179)
Q Consensus        86 ~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d  128 (179)
                      +...++|+..+    +|||+|++....|.++     ++.+..++..++
T Consensus        24 ~Gk~vll~fwa----~wC~~C~~~~p~l~~l~~~~~~~~~v~v~~~d~   67 (134)
T d1zzoa1          24 LGKPAVLWFWA----PWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQ   67 (134)
T ss_dssp             TTSCEEEEEEC----TTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSC
T ss_pred             CCCEEEEEecc----cccCcccccchhhHHHHhhhccccccccccccc
Confidence            34556666555    6999999887777554     344556665544

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=96.41  E-value=0.012  Score=41.22  Aligned_cols=40  Identities=23%  Similarity=0.258  Sum_probs=29.5

Q ss_pred             cCCcEEEEEeeCCCCCCCchHHHHHHHHHhc---CCCeEEEEcCCCH
Q 030327           86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKSL---NAPFETVNILENE  129 (179)
Q Consensus        86 ~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~---gv~y~~vdV~~d~  129 (179)
                      +..+|+|+...    +||++|++....|+++   ++.+..++++.+.
T Consensus        19 ~Gk~vvl~Fwa----tWC~pC~~e~p~l~~~~~~~~~vi~i~~~~~~   61 (136)
T d1z5ye1          19 QGKPVLLNVWA----TWCPTSRAEHQYLNQLSAQGIRVVGMNYKDDR   61 (136)
T ss_dssp             SSSCEEEEEEC----TTCHHHHHHHHHHHHHHHTTCCEEEEEESCCH
T ss_pred             CCCEEEEEEEc----CcCCCcCccccchhhhhhhhhhhcccccccch
Confidence            56678886665    5999999888877654   6777777776653

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.39  E-value=0.0067  Score=42.63  Aligned_cols=41  Identities=20%  Similarity=0.340  Sum_probs=29.0

Q ss_pred             cCCcEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHH
Q 030327           86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEM  130 (179)
Q Consensus        86 ~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~  130 (179)
                      +...++|+..+    +|||+|.+....|++.     ++.+..++.+++.+
T Consensus        23 ~Gk~vll~F~a----~wC~~C~~~~p~l~~~~~~~~~v~~v~v~~~~~~~   68 (134)
T d1lu4a_          23 QGKPAVLWFWT----PWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVG   68 (134)
T ss_dssp             TTSCEEEEEEC----TTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHH
T ss_pred             CCCEEEEEEee----cccCCceecchhHHHHhhhhccccccccccccchh
Confidence            35567776665    6999999988877543     56677777766644

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.38  E-value=0.00086  Score=52.22  Aligned_cols=81  Identities=15%  Similarity=0.166  Sum_probs=49.3

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceE--eeCCEEEeecHHHH
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEFFGGCDITV  161 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~V--fIdG~~IGG~del~  161 (179)
                      .|||....    +||+.|+.+-..|..+     .+.|-.+|.+..+     +....+...+|.+  |.||+.++.+-.+.
T Consensus       122 ~Vvvhfy~----~~~~~C~~~~~~l~~lA~~~~~vkF~ki~~~~~~-----~~~~~~i~~lPtl~~yk~G~~v~~~vg~~  192 (217)
T d2trcp_         122 TIVVNIYE----DGVRGCDALNSSLECLAAEYPMVKFCKIRASNTG-----AGDRFSSDVLPTLLVYKGGELISNFISVA  192 (217)
T ss_dssp             EEEEEEEC----TTSTTHHHHHHHHHHHHTTCTTSEEEEEEHHHHT-----CSTTSCGGGCSEEEEEETTEEEEEETTGG
T ss_pred             eEEEEEEc----CCCCChhhhhhhHHHHhhhcccceEEEEccccch-----hHHhCCCCCCCeEEEEECCEEEEEEECcc
Confidence            36664443    7999999999999876     3456666653221     2223455677876  77999887543322


Q ss_pred             HH----HHcccHHHHHHhhhc
Q 030327          162 EA----YKNGELQELLEKALC  178 (179)
Q Consensus       162 ~l----~~~GeL~~~L~~a~~  178 (179)
                      +.    ....+|+.+|.+.|+
T Consensus       193 ~~~g~~~~~~~lE~~L~~~g~  213 (217)
T d2trcp_         193 EQFAEDFFAADVESFLNEYGL  213 (217)
T ss_dssp             GGSCSSCCHHHHHHHHHTTTC
T ss_pred             ccccccCCHHHHHHHHHHcCC
Confidence            21    112346666766653

>d1tw9a2 c.47.1.5 (A:1-77) Class sigma GST {Heligmosomoides polygyrus [TaxId: 6339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class sigma GST
species: Heligmosomoides polygyrus [TaxId: 6339]

Probab=96.26  E-value=0.017  Score=37.46  Aligned_cols=61  Identities=15%  Similarity=0.189  Sum_probs=49.3

Q ss_pred             CCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHH
Q 030327          102 QCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAY  164 (179)
Q Consensus       102 ~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~  164 (179)
                      .-+.|+.++-+|...|++|+.+.+..  +.....+......++|.+.+||..|.....+.++.
T Consensus        11 ~~gr~e~vR~~L~~~gi~ye~~~~~~--~~~~~~~~~~p~g~lPvL~~~g~~i~qS~AI~~yL   71 (77)
T d1tw9a2          11 GRGAGECARQVFALADQKYEDVRLTQ--ETFVPLKATFPFGQVPVLEVDGQQLAQSQAICRYL   71 (77)
T ss_dssp             SSGGGHHHHHHHHHTTCCCEEEEECH--HHHGGGGGGSTTSCSCEEEETTEEEECHHHHHHHH
T ss_pred             CchHHHHHHHHHHHcCCCceeeeccc--ccchhhhhhcccCCCCEEEECCEEEEcHHHHHHHH
Confidence            45789999999999999999988853  33344555567789999999999999888777764

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.26  E-value=0.0055  Score=44.63  Aligned_cols=90  Identities=11%  Similarity=0.161  Sum_probs=51.6

Q ss_pred             HHHHHHHhhhcCC-cEEEEEeeCCCCCCCchHHHHHH----------HHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCc
Q 030327           76 ELKSTLDKVVTGN-KVVLFMKGTKDFPQCGFSHTVVQ----------ILKSLNAPFETVNILENEMLRQGLKEYSSWPTF  144 (179)
Q Consensus        76 ~~~~~l~~li~~~-~Vvlysk~t~~~p~Cp~C~~ak~----------lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tv  144 (179)
                      +.++.++...+++ .|+||..+    +||++|++..+          ++++   .|..+.++.+.+-.+.+.+.++...+
T Consensus        30 ~~~~A~~~Ak~~~K~llV~~~~----~~C~~C~~m~~~v~~d~~V~~~l~~---~fV~~~v~~~~~e~~~~~~~y~v~~~  102 (147)
T d2dlxa1          30 SFETAKECGQMQNKWLMINIQN----VQDFACQCLNRDVWSNEAVKNIIRE---HFIFWQVYHDSEEGQRYIQFYKLGDF  102 (147)
T ss_dssp             CHHHHHHHHHHHTCEEEEEEEC----SCTTTHHHHHHHTTTCHHHHHHHHH---TEEEEEEESSSHHHHHHHHHHTCCSS
T ss_pred             CHHHHHHHHHHcCCcEEEEEec----CCCCchHHHHHhccCCHHHHHHHhh---heeEeeecccchhhhhhhhheecCce
Confidence            3444455544444 57777776    79999987644          3333   46666665443334555566688889


Q ss_pred             ceE-eeC---CEE---EeecHHHHHHHHcccHHHHHHh
Q 030327          145 PQL-YIE---GEF---FGGCDITVEAYKNGELQELLEK  175 (179)
Q Consensus       145 P~V-fId---G~~---IGG~del~~l~~~GeL~~~L~~  175 (179)
                      |.+ |||   |+.   +|+.+ ..++.  ..|++.|+.
T Consensus       103 Pti~~idp~~ge~v~~~~~~~-~~~fl--~~L~~fl~~  137 (147)
T d2dlxa1         103 PYVSILDPRTGQKLVEWHQLD-VSSFL--DQVTGFLGE  137 (147)
T ss_dssp             SEEEEECTTTCCCCEEESSCC-HHHHH--HHHHHHHHH
T ss_pred             eEEEEEeCCCCeEecccCCCC-HHHHH--HHHHHHHhh
Confidence            977 664   554   34443 22322  335666653

>d1tu7a2 c.47.1.5 (A:1-77) Class pi GST {Onchocerca volvulus [TaxId: 6282]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class pi GST
species: Onchocerca volvulus [TaxId: 6282]

Probab=96.22  E-value=0.006  Score=39.66  Aligned_cols=62  Identities=13%  Similarity=0.166  Sum_probs=49.5

Q ss_pred             CCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327          102 QCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus       102 ~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      ..+.|..++-+|...|++|+.+.+...+  ....+......++|.+..||..|.....+.++..
T Consensus        10 ~~g~~e~iRl~L~~~gi~~e~~~~~~~~--~~~~~~~~p~g~lPvL~~~~~~l~qS~AI~~YLa   71 (77)
T d1tu7a2          10 IRGLAEPIRLFLVDQDIKFIDDRIAKDD--FSSIKSQFQFGQLPCLYDGDQQIVQSGAILRHLA   71 (77)
T ss_dssp             SSGGGHHHHHHHHHTTCCCEEEEECGGG--STTTGGGSTTSCSCEEEETTEEEESHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCceeeeccccc--chhhcccCCCCCCCEEEECCEEEEcHHHHHHHHH
Confidence            5789999999999999999988875432  2334455677899999999999999888877643

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.17  E-value=0.0043  Score=43.33  Aligned_cols=66  Identities=15%  Similarity=0.194  Sum_probs=38.0

Q ss_pred             HhhhcCCc--EEEEEeeCCCCCCCchHH------HHHHHHH-------hcCCCeEEEEcCCCHHHHHHHHHhcCCCCcce
Q 030327           82 DKVVTGNK--VVLFMKGTKDFPQCGFSH------TVVQILK-------SLNAPFETVNILENEMLRQGLKEYSSWPTFPQ  146 (179)
Q Consensus        82 ~~li~~~~--Vvlysk~t~~~p~Cp~C~------~ak~lL~-------~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~  146 (179)
                      ++++++++  +|.|..     |||++|.      .+...+.       ..++.+..||.+.++++.+.+. +.|.||+ .
T Consensus        22 ~~~l~~~~~~~V~Fya-----pwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~~~~l~~~~~-I~~yPTi-~   94 (124)
T d1a8ya1          22 KNVFKKYEVLALLYHE-----PPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLG-LTEEDSI-Y   94 (124)
T ss_dssp             HHHHHHCSEEEEEEEC-----CCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETTTSHHHHHTTT-CCSTTCE-E
T ss_pred             HHHHHhCCeEEEEEEC-----CCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEeecccchhhccc-cccCCcE-E
Confidence            33444443  444555     7999753      3333333       3457789999988877644332 2344444 4


Q ss_pred             EeeCCEEE
Q 030327          147 LYIEGEFF  154 (179)
Q Consensus       147 VfIdG~~I  154 (179)
                      +|.+|+.+
T Consensus        95 ~f~~g~~~  102 (124)
T d1a8ya1          95 VFKEDEVI  102 (124)
T ss_dssp             EEESSSEE
T ss_pred             EeccCccE
Confidence            47788776

>d1k3ya2 c.47.1.5 (A:2-80) Class alpha GST {Human (Homo sapiens), (a1-1) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Human (Homo sapiens), (a1-1) [TaxId: 9606]

Probab=96.13  E-value=0.013  Score=38.09  Aligned_cols=64  Identities=17%  Similarity=0.134  Sum_probs=48.3

Q ss_pred             CCchHHHHHHHHHhcCCCeEEEEcCCCHHHH-HHHHHhcCCCCcceEeeCCEEEeecHHHHHHHH
Q 030327          102 QCGFSHTVVQILKSLNAPFETVNILENEMLR-QGLKEYSSWPTFPQLYIEGEFFGGCDITVEAYK  165 (179)
Q Consensus       102 ~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~-~~L~~~sg~~tvP~VfIdG~~IGG~del~~l~~  165 (179)
                      .-+.++.++-+|...|++|+.+.+...+... ..........++|.+.+||..|.....+.++..
T Consensus        11 ~~grae~irl~L~~~gv~yed~~~~~~~~~~~~~~~~~~p~g~lPvl~~~g~~l~qS~AI~~YLa   75 (79)
T d1k3ya2          11 ARGRMESTRWLLAAAGVEFEEKFIKSAEDLDKLRNDGYLMFQQVPMVEIDGMKLVQTRAILNYIA   75 (79)
T ss_dssp             SSTTTHHHHHHHHHHTCCCEEEEECSHHHHHHHHHTTCCTTSCSCEEEETTEEEESHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCceEEEecchhhhhhhcccccCCCCCCCEEEECCeEEEcHHHHHHHHH
Confidence            4578999999999999999998886543322 222233346789999999999998888777643

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.90  E-value=0.0026  Score=45.27  Aligned_cols=70  Identities=16%  Similarity=0.249  Sum_probs=42.5

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhc-------CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee--CCEEE-----
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEFF-----  154 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-------gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI--dG~~I-----  154 (179)
                      .|+|+...    |||++|+++...|.++       +..+..++++.+..    +....+...+|.+++  +|+..     
T Consensus        32 ~vlV~F~a----~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~~~----~~~~~~v~~~Ptl~~f~~g~~~~~~~y  103 (140)
T d2b5ea1          32 DVLVLYYA----PWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTEN----DVRGVVIEGYPTIVLYPGGKKSESVVY  103 (140)
T ss_dssp             CEEEEEEC----TTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGC----CCSSCCCSSSSEEEEECCTTSCCCCBC
T ss_pred             CEEEEEEe----ccCcccchhHHHHHHHHHHHhccccceEEEeeeccch----hccccccccCCeEEEEECCEEcceeEe
Confidence            45554444    7999999998887654       34566666665443    233457778998743  66432     


Q ss_pred             -e--ecHHHHHHHHc
Q 030327          155 -G--GCDITVEAYKN  166 (179)
Q Consensus       155 -G--G~del~~l~~~  166 (179)
                       |  ..+++.++.++
T Consensus       104 ~G~~t~~~l~~fi~~  118 (140)
T d2b5ea1         104 QGSRSLDSLFDFIKE  118 (140)
T ss_dssp             CSCCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHH
Confidence             3  23566666554

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=95.65  E-value=0.023  Score=40.54  Aligned_cols=65  Identities=20%  Similarity=0.259  Sum_probs=39.5

Q ss_pred             cCCcEEEEEeeCCCCCCCchHHHHHHHHHh----c--CCCeE--EEEcCCCHH--------------------HHHHHHH
Q 030327           86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKS----L--NAPFE--TVNILENEM--------------------LRQGLKE  137 (179)
Q Consensus        86 ~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~----~--gv~y~--~vdV~~d~~--------------------~~~~L~~  137 (179)
                      +...|+|+...    .||+.|++....|.+    +  +..++  .|+.+++.+                    .++.|.+
T Consensus        27 ~GK~vll~FwA----tWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~  102 (144)
T d1i5ga_          27 AGKTVFFYFSA----SWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTT  102 (144)
T ss_dssp             TTSEEEEEEEC----TTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEEEEe----cCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHHHHhCCCCceeeEChHHHHHHHH
Confidence            45667777765    599999987766643    2  22344  444554422                    1334566


Q ss_pred             hcCCCCcceEe-eC---CEEE
Q 030327          138 YSSWPTFPQLY-IE---GEFF  154 (179)
Q Consensus       138 ~sg~~tvP~Vf-Id---G~~I  154 (179)
                      ..|...+|.++ ||   |+.+
T Consensus       103 ~y~v~~iPt~~lid~~~G~vi  123 (144)
T d1i5ga_         103 GFDVKSIPTLVGVEADSGNII  123 (144)
T ss_dssp             HTTCCSSSEEEEEETTTCCEE
T ss_pred             HCCCCCcCEEEEEeCCCCEEE
Confidence            67888999764 54   4555

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=95.54  E-value=0.028  Score=39.29  Aligned_cols=60  Identities=17%  Similarity=0.139  Sum_probs=37.6

Q ss_pred             cCCcEEEEEeeCCCCCCCchHHHHHHHHH----hcC----CCeEEEEcCCCHH--------------------HHHHHHH
Q 030327           86 TGNKVVLFMKGTKDFPQCGFSHTVVQILK----SLN----APFETVNILENEM--------------------LRQGLKE  137 (179)
Q Consensus        86 ~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~----~~g----v~y~~vdV~~d~~--------------------~~~~L~~  137 (179)
                      +...|+||..+    +||+.|......|.    +++    +.+..++++++.+                    ....+.+
T Consensus        25 ~GK~vll~Fwa----~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~  100 (144)
T d1o8xa_          25 AGKLVFFYFSA----SWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSK  100 (144)
T ss_dssp             TTCEEEEEEEC----TTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHH
T ss_pred             CCCEEEEEecc----ccccccccccchhHHhhhhcccccccccccccccccHHHHHHHHhhccccceeeecccchhhHHH
Confidence            35567778776    69999998776553    332    2344445544321                    2345666


Q ss_pred             hcCCCCcceEee
Q 030327          138 YSSWPTFPQLYI  149 (179)
Q Consensus       138 ~sg~~tvP~VfI  149 (179)
                      ..+...+|.+++
T Consensus       101 ~y~v~~~Pt~~l  112 (144)
T d1o8xa_         101 HFNVESIPTLIG  112 (144)
T ss_dssp             HTTCCSSSEEEE
T ss_pred             HcCCCcCCEEEE
Confidence            678889998855

>d2c4ja2 c.47.1.5 (A:2-85) Class mu GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class mu GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.47  E-value=0.026  Score=36.68  Aligned_cols=71  Identities=13%  Similarity=0.161  Sum_probs=50.9

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCH-------HH-HHHHHHhcCCCCcceEeeCCEEEeecHHH
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENE-------ML-RQGLKEYSSWPTFPQLYIEGEFFGGCDIT  160 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~-------~~-~~~L~~~sg~~tvP~VfIdG~~IGG~del  160 (179)
                      +++++...     -.+.++.++-+|...|++|+.+.++.++       +. .+..+...-..++|.+..||..|.....+
T Consensus         1 P~~L~Y~~-----~~g~~~~vR~~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lP~L~~~g~~l~eS~AI   75 (84)
T d2c4ja2           1 PMTLGYWN-----IRGLAHSIRLLLEYTDSSYEEKKYTMGDAPDYDRSQWLNEKFKLGLDFPNLPYLIDGTHKITQSNAI   75 (84)
T ss_dssp             CEEEEEES-----SSGGGHHHHHHHHHTTCCEEEEEECCCCTTTTCCHHHHTTTTSSCCSSCCSSEEEETTEEEESHHHH
T ss_pred             CEEEEECC-----CchhhHHHHHHHHHcCCCceEEEEccccccccchHHHhhhhhhccCCCCCCCEEEECCEEEecHHHH
Confidence            35665553     5678999999999999999988875321       11 11223334467899999999999888877


Q ss_pred             HHHH
Q 030327          161 VEAY  164 (179)
Q Consensus       161 ~~l~  164 (179)
                      .++.
T Consensus        76 l~YL   79 (84)
T d2c4ja2          76 LRYI   79 (84)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7664

>d1n2aa2 c.47.1.5 (A:1-80) Class beta GST {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class beta GST
species: Escherichia coli [TaxId: 562]

Probab=95.27  E-value=0.0044  Score=40.46  Aligned_cols=61  Identities=11%  Similarity=0.089  Sum_probs=46.0

Q ss_pred             HHHHHHHHHhcCCCeEEEEcCC--CH-HHHHHHHHhcCCCCcceEee-CCEEEeecHHHHHHHHc
Q 030327          106 SHTVVQILKSLNAPFETVNILE--NE-MLRQGLKEYSSWPTFPQLYI-EGEFFGGCDITVEAYKN  166 (179)
Q Consensus       106 C~~ak~lL~~~gv~y~~vdV~~--d~-~~~~~L~~~sg~~tvP~VfI-dG~~IGG~del~~l~~~  166 (179)
                      +.+++-+|.++|++|+.+.|+-  .+ ...+++.+++...++|++.. ||..+.....+.++.++
T Consensus        11 s~~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~dg~~l~ES~aI~~yL~~   75 (80)
T d1n2aa2          11 SLASHITLRESGKDFTLVSVDLMKKRLENGDDYFAVNPKGQVPALLLDDGTLLTEGVAIMQYLAD   75 (80)
T ss_dssp             THHHHHHHHHTTCCCEEEEEETTTTEETTCCBGGGTCTTCCSCEEECTTSCEEESHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCEEEEEcCCCCcccCCHHHHHHhcccceeeEEecCCCEEcCHHHHHHHHHH
Confidence            6789999999999998877642  22 23345667778889999987 56888888888777543

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=95.24  E-value=0.037  Score=39.05  Aligned_cols=67  Identities=25%  Similarity=0.373  Sum_probs=40.7

Q ss_pred             cCCcEEEEEeeCCCCCCCchHHHHHHHHHh----c--CCCeEEE--EcCCCHH--------------------HHHHHHH
Q 030327           86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKS----L--NAPFETV--NILENEM--------------------LRQGLKE  137 (179)
Q Consensus        86 ~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~----~--gv~y~~v--dV~~d~~--------------------~~~~L~~  137 (179)
                      +...|+|+...    .||+.|++....|++    +  +..++.+  .++++.+                    ....+.+
T Consensus        27 ~GK~vvl~Fwa----twC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  102 (144)
T d1o73a_          27 VGKTVFLYFSA----SWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGK  102 (144)
T ss_dssp             TTCEEEEEEEC----TTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEEeCh----hhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHHHHHHhccccceeeeccchHHHHHH
Confidence            45667777775    699999987766643    3  2234444  4444322                    1234555


Q ss_pred             hcCCCCcceEe-e--C-CEEEee
Q 030327          138 YSSWPTFPQLY-I--E-GEFFGG  156 (179)
Q Consensus       138 ~sg~~tvP~Vf-I--d-G~~IGG  156 (179)
                      ..|...+|.+| |  + |+.|+.
T Consensus       103 ~y~v~~~Pt~~lID~~~G~Ii~~  125 (144)
T d1o73a_         103 TFGVESIPTLITINADTGAIIGT  125 (144)
T ss_dssp             HHTCCSSSEEEEEETTTCCEEES
T ss_pred             HcCCCcCCEEEEEECCCCEEEee
Confidence            56788899985 4  3 667764

>d1duga2 c.47.1.5 (A:1-80) Class alpha GST {Schistosoma japonicum [TaxId: 6182]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Schistosoma japonicum [TaxId: 6182]

Probab=95.19  E-value=0.031  Score=36.18  Aligned_cols=70  Identities=11%  Similarity=0.065  Sum_probs=50.1

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCC-HHHHHHHH--HhcCCCCcceEeeCCEEEeecHHHHHHH
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN-EMLRQGLK--EYSSWPTFPQLYIEGEFFGGCDITVEAY  164 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d-~~~~~~L~--~~sg~~tvP~VfIdG~~IGG~del~~l~  164 (179)
                      ++..|..      -=+.++.++-+|...|++|+.+.++.. .+.....+  ......++|.+..||..+.....+..+.
T Consensus         2 P~L~Y~~------~rgrae~vRl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~p~~~lP~l~d~g~~l~qS~AI~ryL   74 (80)
T d1duga2           2 PILGYWK------IKGLVQPTRLLLEYLEEKYEEHLYERDEGDKWRNKKFELGLEFPNLPYYIDGDVKLTQSMAIIRYI   74 (80)
T ss_dssp             CEEEEES------SSGGGHHHHHHHHHHTCCCEEEEECTTCHHHHHHHTTSSCCSSCCSSEEECSSCEEESHHHHHHHH
T ss_pred             CEEEEcC------CchhhHHHHHHHHHcCCCceEEEEecccccccchhhhhccCCCcccceeccCCeeehhHHHHHHHH
Confidence            4566665      346888999999999999998887643 33222222  2224678999999999998888777664

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.96  E-value=0.028  Score=40.07  Aligned_cols=20  Identities=15%  Similarity=0.180  Sum_probs=16.9

Q ss_pred             cCCCCcceEeeCCEEEeecH
Q 030327          139 SSWPTFPQLYIEGEFFGGCD  158 (179)
Q Consensus       139 sg~~tvP~VfIdG~~IGG~d  158 (179)
                      .|-..+|.+||||+.+.|.-
T Consensus       142 ~gI~gTPt~~Ing~~~~g~~  161 (172)
T d1z6ma1         142 AHIQFVPTIIIGEYIFDESV  161 (172)
T ss_dssp             HTCCSSCEEEETTEEECTTC
T ss_pred             cCCCcCCEEEECCEEecCCC
Confidence            47888999999999997653

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=94.69  E-value=0.055  Score=39.31  Aligned_cols=26  Identities=12%  Similarity=0.199  Sum_probs=17.5

Q ss_pred             cCCcEEEEEeeCCCCCCCchHHHHHHHHHh
Q 030327           86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKS  115 (179)
Q Consensus        86 ~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~  115 (179)
                      +...|+|+...    +||++|......|.+
T Consensus        55 kGK~vll~F~a----~wC~~C~~~~~~l~~   80 (176)
T d1jfua_          55 RGKTLLVNLWA----TWCVPCRKEMPALDE   80 (176)
T ss_dssp             TTSEEEEEEEC----TTCHHHHHHHHHHHH
T ss_pred             CCCEEEEEecc----CcccchHHHHHhhhh
Confidence            34556666655    699999876666644

>d1nhya2 c.47.1.5 (A:1-75) GST-like domain of elongation factor 1-gamma {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: GST-like domain of elongation factor 1-gamma
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.57  E-value=0.061  Score=34.66  Aligned_cols=69  Identities=9%  Similarity=-0.043  Sum_probs=52.2

Q ss_pred             CcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHHHHHHHHhcCCCCcceEeeC-CEEEeecHHHHHHHH
Q 030327           88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIE-GEFFGGCDITVEAYK  165 (179)
Q Consensus        88 ~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfId-G~~IGG~del~~l~~  165 (179)
                      ...++|+.     +. +.+..++.++++.|++|+.++.+.   ..+++.+.+...++|.+..+ |..+-....+.++..
T Consensus         2 s~~tLY~~-----~~-~rs~~~~~~l~~~~~d~~~~~~~~---~~~~~~~~nP~gkVP~L~~~~g~~l~ES~aI~~YL~   71 (75)
T d1nhya2           2 SQGTLYAN-----FR-IRTWVPRGLVKALKLDVKVVTPDA---AAEQFARDFPLKKVPAFVGPKGYKLTEAMAINYYLV   71 (75)
T ss_dssp             TTCEEECC-----SS-HHHHHHHHHHHHHTCCCEEECGGG---CHHHHHHHCTTCCSSEEECGGGCEEESHHHHHHHHH
T ss_pred             CCeEEecC-----CC-chHHHHHHHHHhcCccccccCccc---CCHHHHHhCcCCCCCeEEeCCeeEecCHHHHHHHHH
Confidence            34678886     23 467888889999999998877543   34467778889999999864 788888887777653

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.49  E-value=0.033  Score=40.76  Aligned_cols=31  Identities=23%  Similarity=0.372  Sum_probs=21.5

Q ss_pred             EEEEEeeCCCCCCCchHHHHHHHH----HhcCCCeEEEEc
Q 030327           90 VVLFMKGTKDFPQCGFSHTVVQIL----KSLNAPFETVNI  125 (179)
Q Consensus        90 Vvlysk~t~~~p~Cp~C~~ak~lL----~~~gv~y~~vdV  125 (179)
                      |++|+.     +.||||++.-..+    ++.++.+..+++
T Consensus        40 v~vF~D-----~~CP~C~~~~~~l~~l~~~~~v~v~~~~~   74 (169)
T d1v58a1          40 VYVFAD-----PFCPYCKQFWQQARPWVDSGKVQLRTLLV   74 (169)
T ss_dssp             EEEEEC-----TTCHHHHHHHHHHHHHHHTTSEEEEEEEC
T ss_pred             EEEEEC-----CCCcchHHHHHHHHHHHhccceeEEEEec
Confidence            555666     7999999665544    444577777776

>d1pmta2 c.47.1.5 (A:1-80) Class beta GST {Proteus mirabilis [TaxId: 584]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class beta GST
species: Proteus mirabilis [TaxId: 584]

Probab=94.48  E-value=0.011  Score=38.40  Aligned_cols=62  Identities=13%  Similarity=0.121  Sum_probs=46.1

Q ss_pred             hHHHHHHHHHhcCCCeEEEEcCC--CHHH-HHHHHHhcCCCCcceEeeC-CEEEeecHHHHHHHHc
Q 030327          105 FSHTVVQILKSLNAPFETVNILE--NEML-RQGLKEYSSWPTFPQLYIE-GEFFGGCDITVEAYKN  166 (179)
Q Consensus       105 ~C~~ak~lL~~~gv~y~~vdV~~--d~~~-~~~L~~~sg~~tvP~VfId-G~~IGG~del~~l~~~  166 (179)
                      .+.+++-+|.++|++|+.+.|+-  ..+. ..++.+++...++|.+.++ |..+-....+.++.++
T Consensus        10 ~s~~vr~~L~e~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~ES~aI~~yL~~   75 (80)
T d1pmta2          10 CSLSPHIVLRETGLDFSIERIDLRTKKTESGKDFLAINPKGQVPVLQLDNGDILTEGVAIVQYLAD   75 (80)
T ss_dssp             TTHHHHHHHHHTTCCCEEEEEETTTTEETTSCBGGGTCTTCCSCEEECTTSCEEESHHHHHHHHHT
T ss_pred             hHHHHHHHHHHhCCCCEEEEEecCCCcccCCHHHHHhcccccCCceecCCCcEEeCHHHHHHHHHH
Confidence            36899999999999998777653  2222 2456777888999999875 6778777777777554

>d1xg8a_ c.47.1.17 (A:) Hypothetical protein SA0798 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: YuzD-like
domain: Hypothetical protein SA0798
species: Staphylococcus aureus [TaxId: 1280]

Probab=94.39  E-value=0.075  Score=36.98  Aligned_cols=76  Identities=16%  Similarity=0.232  Sum_probs=48.4

Q ss_pred             hcCCcEEEEEeeCCCCCCCchHH------HHHHHHHhc--------CCCeEEEEcCCCH-----HHHHHHHHhc-CCCCc
Q 030327           85 VTGNKVVLFMKGTKDFPQCGFSH------TVVQILKSL--------NAPFETVNILENE-----MLRQGLKEYS-SWPTF  144 (179)
Q Consensus        85 i~~~~Vvlysk~t~~~p~Cp~C~------~ak~lL~~~--------gv~y~~vdV~~d~-----~~~~~L~~~s-g~~tv  144 (179)
                      .+...|+||+..    .-|+-|.      ...+||+..        .+.|+++||...+     +.++...++- .---+
T Consensus         5 ~~~v~i~VYGA~----~iCASCV~aPSSkeTyEWLqaal~RKyp~~~f~~~YiDi~~~~~~~~~~~~~~ae~I~ede~FY   80 (111)
T d1xg8a_           5 FQSNAVVVYGAD----VICASCVNAPTSKDIYDWLQPLLKRKYPNISFKYTYIDITKDNDNLTDHDLQFIERIEQDELFY   80 (111)
T ss_dssp             SSCEEEEEEECS----SCCGGGSSSCCHHHHHHHHHHHHHHHCTTSCEEEEEEETTTC---CCHHHHHHHHHHHTTSSCS
T ss_pred             cceeEEEEEccc----ccchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEeccCCcccccHHHHHHHHHHhhcccee
Confidence            345679999997    4687774      556666432        3458899985433     2223333332 33458


Q ss_pred             ceEeeCCEEEe-ecHHHHHHH
Q 030327          145 PQLYIEGEFFG-GCDITVEAY  164 (179)
Q Consensus       145 P~VfIdG~~IG-G~del~~l~  164 (179)
                      |.|.+||+.|| |.=.+++.+
T Consensus        81 PlV~i~~eiVaEGnp~LK~I~  101 (111)
T d1xg8a_          81 PLITMNDEYVADGYIQTKQIT  101 (111)
T ss_dssp             SEEEETTEEEEESSCCHHHHH
T ss_pred             eEEEECCEEeecCCccHHHHH
Confidence            99999999998 665666654

>d1f2ea2 c.47.1.5 (A:1-80) Class beta GST {Sphingomonas paucimobilis [TaxId: 13689]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class beta GST
species: Sphingomonas paucimobilis [TaxId: 13689]

Probab=94.34  E-value=0.018  Score=37.44  Aligned_cols=61  Identities=16%  Similarity=0.120  Sum_probs=46.3

Q ss_pred             HHHHHHHHHhcCCCeEEEEcCC--C-HHHHHHHHHhcCCCCcceEee-CCEEEeecHHHHHHHHc
Q 030327          106 SHTVVQILKSLNAPFETVNILE--N-EMLRQGLKEYSSWPTFPQLYI-EGEFFGGCDITVEAYKN  166 (179)
Q Consensus       106 C~~ak~lL~~~gv~y~~vdV~~--d-~~~~~~L~~~sg~~tvP~VfI-dG~~IGG~del~~l~~~  166 (179)
                      +.+++-+|.+.|++|+.+.++.  . ....+++.+++...++|.+.. ||..|.....+.++.++
T Consensus        11 s~~v~~~L~e~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~d~g~~l~ES~aI~~yL~~   75 (80)
T d1f2ea2          11 SLAPHIALRETGADFEAVKVDLAVRKTEAGEDFLTVNPSGKVPALTLDSGETLTENPAILLYIAD   75 (80)
T ss_dssp             THHHHHHHHHHTCCCEEEEEETTTTEETTSCBHHHHCTTCCSCEEECTTSCEEESHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCEEEEEecCCCcccCCHHHHHHhhccccceEEECCCeEEecHHHHHHHHHH
Confidence            4688889999999998877643  2 223356777888899999986 57888888888877543

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.34  E-value=0.0095  Score=41.76  Aligned_cols=48  Identities=17%  Similarity=0.342  Sum_probs=30.0

Q ss_pred             HHHHHHhhhc-CCcEEEEEeeCCCCCCCchHHHHHHHHHh------cCCCeEEEEcCCC
Q 030327           77 LKSTLDKVVT-GNKVVLFMKGTKDFPQCGFSHTVVQILKS------LNAPFETVNILEN  128 (179)
Q Consensus        77 ~~~~l~~li~-~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~------~gv~y~~vdV~~d  128 (179)
                      .++.++...+ ..+|+|+...    +||++|++....+.+      .+..|..++|+.+
T Consensus        14 ~~~al~~A~~~~Kpvlv~F~a----~wC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~   68 (135)
T d1sena_          14 LEDGKKEAAASGLPLMVIIHK----SWCGACKALKPKFAESTEISELSHNFVMVNLEDE   68 (135)
T ss_dssp             HHHHHHHHHHHTCCEEEEEEC----TTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGG
T ss_pred             HHHHHHHHHHcCCcEEEEEEe----cCCCCceecchhhhhhHHHHHhcCCcEEEeCCCC
Confidence            3444554444 4456665554    699999999987633      2356777777543

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=94.14  E-value=0.051  Score=38.73  Aligned_cols=19  Identities=11%  Similarity=0.246  Sum_probs=15.5

Q ss_pred             hcCCCCcceEeeCCEEEee
Q 030327          138 YSSWPTFPQLYIEGEFFGG  156 (179)
Q Consensus       138 ~sg~~tvP~VfIdG~~IGG  156 (179)
                      ..|-..+|.++|||+++.+
T Consensus       142 ~~gi~gTPt~~InGk~~v~  160 (181)
T d1beda_         142 DSGLTGVPAVVVNNRYLVQ  160 (181)
T ss_dssp             HHTCCSSSEEEETTTEEEC
T ss_pred             HhCCccccEEEECCEEeeC
Confidence            3478899999999997643

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=94.04  E-value=0.11  Score=35.78  Aligned_cols=65  Identities=18%  Similarity=0.285  Sum_probs=39.4

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHh-------cCCCeEEEEcCCCH-HHHHHHHH-----------------hcCC
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKS-------LNAPFETVNILENE-MLRQGLKE-----------------YSSW  141 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~-------~gv~y~~vdV~~d~-~~~~~L~~-----------------~sg~  141 (179)
                      ...++|+..+    +||++|.+....|.+       .++.+..++++++. ++++.+.+                 ..|.
T Consensus        25 gk~~li~f~~----~~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  100 (137)
T d1st9a_          25 GKGVFLNFWG----TWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDV  100 (137)
T ss_dssp             TSEEEEEEEC----TTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHTTCCSCEEEETTSHHHHHTTC
T ss_pred             CCEEEEEEee----ccccceeecccccccccccccccccccccccccchhhhHHHHHHHcCCCccccccccchhhhhhhc
Confidence            4456666555    699999877766653       35666777776654 44444433                 2355


Q ss_pred             CCcceEee---CCEEEe
Q 030327          142 PTFPQLYI---EGEFFG  155 (179)
Q Consensus       142 ~tvP~VfI---dG~~IG  155 (179)
                      ..+|.+|+   +|+.+.
T Consensus       101 ~~~P~~~liD~~G~i~~  117 (137)
T d1st9a_         101 SPLPTTFLINPEGKVVK  117 (137)
T ss_dssp             CSSCEEEEECTTSEEEE
T ss_pred             cccceEEEECCCCEEEE
Confidence            67786655   565543

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.03  E-value=0.077  Score=36.48  Aligned_cols=66  Identities=17%  Similarity=0.172  Sum_probs=36.5

Q ss_pred             HHhhhcCCc--EEEEEeeCCCCCCCchHH-----HHHHHHHhcC--CCeEEEEcCC-CHHHHHHHHHhcCC--CCcceE-
Q 030327           81 LDKVVTGNK--VVLFMKGTKDFPQCGFSH-----TVVQILKSLN--APFETVNILE-NEMLRQGLKEYSSW--PTFPQL-  147 (179)
Q Consensus        81 l~~li~~~~--Vvlysk~t~~~p~Cp~C~-----~ak~lL~~~g--v~y~~vdV~~-d~~~~~~L~~~sg~--~tvP~V-  147 (179)
                      .++++.+++  +|.|..     |||++|+     ++.+-+.+.+  +.+..||++. +....+.|....+-  ..+|++ 
T Consensus        12 Fd~~v~~~~~~lV~Fya-----~wC~~ck~p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~i~~~~~PTi~   86 (122)
T d2c0ga2          12 FEKTVERFPYSVVKFDI-----ASPYGEKHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDDKNFPSIF   86 (122)
T ss_dssp             HHHHHTTSSEEEEEEEE-----SSCCSHHHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCTTSCCEEE
T ss_pred             HHHHHhcCCcEEEEEEC-----CCCCcccCHHHHHHHHHHHHhCCCeEEEeccccccccccCHHHHHHhhcccCCCCcEE
Confidence            677777766  344555     7999996     3333333333  3456777743 22222334444443  468888 


Q ss_pred             -eeCC
Q 030327          148 -YIEG  151 (179)
Q Consensus       148 -fIdG  151 (179)
                       |.+|
T Consensus        87 ~f~~g   91 (122)
T d2c0ga2          87 LFKGN   91 (122)
T ss_dssp             EESSS
T ss_pred             EEeCC
Confidence             4455

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.96  E-value=0.046  Score=38.60  Aligned_cols=55  Identities=18%  Similarity=0.352  Sum_probs=36.3

Q ss_pred             cEEEEEeeCCCCCCCchHHHHHHHHHhc-----CCCeEEEEcCCCHHHHHHHHHhcCCCCcceEee
Q 030327           89 KVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI  149 (179)
Q Consensus        89 ~Vvlysk~t~~~p~Cp~C~~ak~lL~~~-----gv~y~~vdV~~d~~~~~~L~~~sg~~tvP~VfI  149 (179)
                      .+++|...    ..|++|..++++|++.     ++.++++|.+.+ +. .++.+..|....|.+.+
T Consensus        25 ~l~~~~~~----~~~~~~~e~~~ll~ela~lSdki~~~~~~~~~~-e~-~~~~~~~~ver~Ps~~i   84 (119)
T d1a8la1          25 KLIVFVRK----DHCQYCDQLKQLVQELSELTDKLSYEIVDFDTP-EG-KELAKRYRIDRAPATTI   84 (119)
T ss_dssp             EEEEEECS----SSCTTHHHHHHHHHHHHTTCTTEEEEEEETTSH-HH-HHHHHHTTCCSSSEEEE
T ss_pred             EEEEEecC----CCchhHHHHHHHHHHHHhhCCCeEEEEeccCcc-hh-hhHHHhhccccCceEEE
Confidence            46666642    3799999999999886     345666666432 22 34444457778897755

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=93.86  E-value=0.17  Score=35.20  Aligned_cols=40  Identities=5%  Similarity=0.248  Sum_probs=26.0

Q ss_pred             HhhhcCCcEEEEEeeCCCCCCCchHHHHHHHHHhc------CCCeEEEEc
Q 030327           82 DKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNI  125 (179)
Q Consensus        82 ~~li~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~------gv~y~~vdV  125 (179)
                      .+......++|+..+    +||++|.+....|+++      ++.+..+++
T Consensus        24 ~~~~~~k~vvl~f~a----~~C~~C~~~~p~l~~l~~~~~~~~~~i~v~~   69 (143)
T d2b5xa1          24 EQLIGEKPTLIHFWS----ISCHLCKEAMPQVNEFRDKYQDQLNVVAVHM   69 (143)
T ss_dssp             HHHTTTSCEEEEEEC----TTCHHHHHHHHHHHHHHHHHTTTSEEEEEEC
T ss_pred             HHHhCCCEEEEEEEc----CCCcchhhhhhhhhhhhhhhhccccceeEEe
Confidence            334556667776665    6999999887666443      355655555

>d1fhea2 c.47.1.5 (A:1-80) Class alpha GST {Fasciola hepatica [TaxId: 6192]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Fasciola hepatica [TaxId: 6192]

Probab=93.16  E-value=0.087  Score=33.86  Aligned_cols=61  Identities=13%  Similarity=0.064  Sum_probs=44.1

Q ss_pred             chHHHHHHHHHhcCCCeEEEEcCCC--HHHHHHH-HHhcCCCCcceEeeCCEEEeecHHHHHHH
Q 030327          104 GFSHTVVQILKSLNAPFETVNILEN--EMLRQGL-KEYSSWPTFPQLYIEGEFFGGCDITVEAY  164 (179)
Q Consensus       104 p~C~~ak~lL~~~gv~y~~vdV~~d--~~~~~~L-~~~sg~~tvP~VfIdG~~IGG~del~~l~  164 (179)
                      +.++.++-+|...|++|+.+.++.+  ++..+.. +......++|.+..||..|.....+.++.
T Consensus        11 grae~iRl~L~~~gv~ye~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~g~~l~qS~AI~~yL   74 (80)
T d1fhea2          11 GLAQPVRLFLEYLGEEYEEHLYGRDDREKWMSEKFNMGLDLPNLPYYIDDKCKLTQSVAIMRYI   74 (80)
T ss_dssp             TTTHHHHHHHHHTTCCCEEEEECSTTSHHHHTTTTTSCCSSCCSSEEECSSCEEESTTHHHHHH
T ss_pred             hHHHHHHHHHHHcCCCCEEEEeccccchhcchhhhhccCCCcceeeeecCCeEEeCHHHHHHHH
Confidence            5788899999999999999988643  3322221 11234678999999999888777766654

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.29  E-value=0.05  Score=37.50  Aligned_cols=74  Identities=20%  Similarity=0.203  Sum_probs=39.7

Q ss_pred             HHHHhhhcCCcEEEEEeeCC--CCCCCchHHHHHHHHHhcCCC-eEEEEcCC-CHHHHHHHHHhcC--CCCcceE--eeC
Q 030327           79 STLDKVVTGNKVVLFMKGTK--DFPQCGFSHTVVQILKSLNAP-FETVNILE-NEMLRQGLKEYSS--WPTFPQL--YIE  150 (179)
Q Consensus        79 ~~l~~li~~~~Vvlysk~t~--~~p~Cp~C~~ak~lL~~~gv~-y~~vdV~~-d~~~~~~L~~~sg--~~tvP~V--fId  150 (179)
                      ...++++..++.++..-..+  .+++|+.|+++-+.+++..-. ...+++.. |.+....+....+  ...+|.|  |.+
T Consensus        12 ~nFd~~i~~~~~~lV~F~~~wc~~~~~~~~~~la~~~~~~~~~~~~~V~~~~vd~~~n~~l~~~~~~~I~~yPTi~~f~~   91 (122)
T d1g7ea_          12 VTFYKVIPKSKFVLVKFDTQYPYGEKQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDKESYPVFYLFRD   91 (122)
T ss_dssp             HHHHHHGGGSSEEEEEEECSSCCTTTTHHHHHHHHHGGGCSSEEEEEEESCCTTSCHHHHHHHHHTCSSSSCEEEEEEES
T ss_pred             HhHHHHHhhCCeEEEEEecCCcCcccCHHHHHHHHHHHHHHHHhhhccceeeccccccHHHHHhhcccccCCCeEEEEec
Confidence            34678888876443333322  234567778888888775322 33555532 2222234444333  3467766  677


Q ss_pred             CE
Q 030327          151 GE  152 (179)
Q Consensus       151 G~  152 (179)
                      |+
T Consensus        92 G~   93 (122)
T d1g7ea_          92 GD   93 (122)
T ss_dssp             SC
T ss_pred             Cc
Confidence            74

>d2fnoa2 c.47.1.5 (A:1-87) Hypothetical protein AGR_pAT_752p/Atu5508 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Hypothetical protein AGR pAT 752p/Atu5508
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=92.05  E-value=0.078  Score=34.79  Aligned_cols=72  Identities=14%  Similarity=-0.015  Sum_probs=49.3

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhcCCCeEEEEcCCCHHH--HHHHHHhcCCCCcceEeeCC--EEEeecHHHHH
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEML--RQGLKEYSSWPTFPQLYIEG--EFFGGCDITVE  162 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~gv~y~~vdV~~d~~~--~~~L~~~sg~~tvP~VfIdG--~~IGG~del~~  162 (179)
                      .+.+++|..     +..+.+..++-+|...|++|+.+.++.....  ..+.+......++|.+.++|  ..|.-...+.+
T Consensus         5 M~~~~L~Y~-----~~~g~~e~vRl~L~~~g~~ye~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~g~~~l~qS~AI~~   79 (87)
T d2fnoa2           5 MNTFDLYYW-----PVPFRGQLIRGILAHCGCSWDEHDVDAIEGLMDCGAEKQPVAFMGPPVLIDRERNFAISQMPAIAI   79 (87)
T ss_dssp             CBSEEEECC-----SSSSTTHHHHHHHHHTTCCEECCCHHHHHHHHHSCGGGSSSCCSSSCEEEETTTTEEEESHHHHHH
T ss_pred             CCCeEEEEC-----CCCcchHHHHHHHHHHhCcceeeccchhHHHHHhhcccccCCCCCCCEEEecCCCeeeehHHHHHH
Confidence            355788877     3667899999999999999998777433222  22333444678899999854  35666655555


Q ss_pred             H
Q 030327          163 A  163 (179)
Q Consensus       163 l  163 (179)
                      +
T Consensus        80 Y   80 (87)
T d2fnoa2          80 Y   80 (87)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=91.84  E-value=0.066  Score=35.91  Aligned_cols=16  Identities=25%  Similarity=0.609  Sum_probs=14.3

Q ss_pred             CCCchHHHHHHHHHhc
Q 030327          101 PQCGFSHTVVQILKSL  116 (179)
Q Consensus       101 p~Cp~C~~ak~lL~~~  116 (179)
                      +||++|+++...++++
T Consensus        30 ~wC~~Ck~~~p~~~~l   45 (116)
T d2djja1          30 PWCGHCKALAPKYEEL   45 (116)
T ss_dssp             SSCTTHHHHHHHHHHH
T ss_pred             cccccccccchHHHHH
Confidence            7999999999998765

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=91.42  E-value=0.16  Score=35.14  Aligned_cols=26  Identities=4%  Similarity=0.087  Sum_probs=17.2

Q ss_pred             cCCcEEEEEeeCCCCCCCchHHHHHHHHHh
Q 030327           86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKS  115 (179)
Q Consensus        86 ~~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~  115 (179)
                      +..+|+|+..+    +|||+|.+....|.+
T Consensus        22 ~gk~vvl~F~a----~wC~~C~~~~~~l~~   47 (143)
T d2fy6a1          22 KDKPTLIKFWA----SWCPLCLSELGQTEK   47 (143)
T ss_dssp             TTSCEEEEEEC----TTCHHHHTTHHHHHH
T ss_pred             CCCEEEEEEEC----CCCccccccCcchhh
Confidence            34566666665    699999965544433

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=89.95  E-value=0.33  Score=34.58  Aligned_cols=17  Identities=12%  Similarity=0.460  Sum_probs=14.3

Q ss_pred             hcCCCCcceEeeCCEEE
Q 030327          138 YSSWPTFPQLYIEGEFF  154 (179)
Q Consensus       138 ~sg~~tvP~VfIdG~~I  154 (179)
                      ..|-..+|.++|||+++
T Consensus       144 ~~gI~gTPt~vInGky~  160 (188)
T d1fvka_         144 DVQLRGVPAMFVNGKYQ  160 (188)
T ss_dssp             HTTCCSSSEEEETTTEE
T ss_pred             HcCCccccEEEECCEEE
Confidence            34889999999999864

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=86.69  E-value=0.061  Score=40.56  Aligned_cols=50  Identities=6%  Similarity=0.149  Sum_probs=35.1

Q ss_pred             HHHHHHHHhcCCCeEEEEc-CCCHHHHHHH------HHhcCCCCcceEeeCCEEEee
Q 030327          107 HTVVQILKSLNAPFETVNI-LENEMLRQGL------KEYSSWPTFPQLYIEGEFFGG  156 (179)
Q Consensus       107 ~~ak~lL~~~gv~y~~vdV-~~d~~~~~~L------~~~sg~~tvP~VfIdG~~IGG  156 (179)
                      ..+++++.+.|++-+.++- ..++.+++.+      .+..|-..+|.++|||+++-+
T Consensus         7 ~~i~~~~~~~Gld~~~f~~~~~s~~~~~~v~~~~~~a~~~gi~GtPtfiVnGky~v~   63 (195)
T d1un2a_           7 SDIRDVFINAGIKGEEYDAAWNSFVVKSLVAQQEKAAADVQLRGVPAMFVNGKYQLN   63 (195)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHTSHHHHHHHHHHHHHHHHTTCCSSSEEEETTTEEEC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHcCHHHHHHHHHHHHHHHHhCCCcCCEEEECCeeeec
Confidence            3678899999998665553 2344443333      234589999999999998754

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=85.77  E-value=0.73  Score=33.74  Aligned_cols=26  Identities=12%  Similarity=0.230  Sum_probs=16.2

Q ss_pred             CCcEEEEEeeCCCCCCCchHHHHHHHHHhc
Q 030327           87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL  116 (179)
Q Consensus        87 ~~~Vvlysk~t~~~p~Cp~C~~ak~lL~~~  116 (179)
                      ...|+|....    .|||+|++....|.++
T Consensus        32 Gk~vvl~Fwa----twCp~C~~~~p~l~~l   57 (187)
T d2cvba1          32 EPLLAVVFMC----NHCPYVKGSIGELVAL   57 (187)
T ss_dssp             SSEEEEEEEC----SSCHHHHTTHHHHHHH
T ss_pred             CCeEEEEEeC----CCCccchhhhhhhhhh
Confidence            3445554443    5999998776666443