Citrus Sinensis ID: 030339
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 179 | 2.2.26 [Sep-21-2011] | |||||||
| Q54HG7 | 303 | Methylglutaconyl-CoA hydr | yes | no | 0.826 | 0.488 | 0.563 | 3e-40 | |
| Q3TLP5 | 296 | Enoyl-CoA hydratase domai | yes | no | 0.910 | 0.550 | 0.517 | 1e-39 | |
| O34893 | 260 | Putative enoyl-CoA hydrat | yes | no | 0.938 | 0.646 | 0.502 | 2e-39 | |
| Q2TBT3 | 296 | Enoyl-CoA hydratase domai | yes | no | 0.910 | 0.550 | 0.505 | 1e-38 | |
| Q86YB7 | 292 | Enoyl-CoA hydratase domai | yes | no | 0.910 | 0.558 | 0.5 | 5e-38 | |
| A4YI89 | 259 | 3-hydroxypropionyl-coenzy | yes | no | 0.944 | 0.652 | 0.444 | 9e-33 | |
| Q13825 | 339 | Methylglutaconyl-CoA hydr | no | no | 0.927 | 0.489 | 0.479 | 6e-32 | |
| Q9JLZ3 | 314 | Methylglutaconyl-CoA hydr | no | no | 0.927 | 0.528 | 0.479 | 7e-32 | |
| C6DAL7 | 727 | Fatty acid oxidation comp | yes | no | 0.804 | 0.198 | 0.445 | 8e-28 | |
| Q6D2L7 | 731 | Fatty acid oxidation comp | yes | no | 0.905 | 0.221 | 0.415 | 7e-27 |
| >sp|Q54HG7|AUHM_DICDI Methylglutaconyl-CoA hydratase, mitochondrial OS=Dictyostelium discoideum GN=auh PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 164 bits (414), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 84/149 (56%), Positives = 110/149 (73%), Gaps = 1/149 (0%)
Query: 20 VVMIRSSVPKVFCAGADLKVLQ-MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 78
VV++RS V VFC+GADLK MS E +V++LRS+F+ LE L +PTIA I+G A+G
Sbjct: 94 VVIVRSLVDGVFCSGADLKERALMSQVEASQFVHSLRSSFTELETLQMPTIAAIEGVAVG 153
Query: 79 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSG 138
GG EM LACD R+ +++ +GLPETGLAIIPGAGGTQRLPRL+G AK++IFTG +
Sbjct: 154 GGTEMVLACDFRVASKSSKMGLPETGLAIIPGAGGTQRLPRLIGIPRAKELIFTGAILDS 213
Query: 139 KDAMSLGLVNYYVPAGQAQLKALEIAQEI 167
K A+ +GLV Y G+A KA+EIA++I
Sbjct: 214 KRALEIGLVQYETEKGEAFDKAIEIAKQI 242
|
Catalyzes the conversion of 3-methylglutaconyl-CoA to 3-hydroxy-3-methylglutaryl-CoA. Dictyostelium discoideum (taxid: 44689) EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 8 |
| >sp|Q3TLP5|ECHD2_MOUSE Enoyl-CoA hydratase domain-containing protein 2, mitochondrial OS=Mus musculus GN=Echdc2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 162 bits (409), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 87/168 (51%), Positives = 114/168 (67%), Gaps = 5/168 (2%)
Query: 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFSFLEA 63
L A + ED V++ RS+V VFCAGADLK QMS E+ +V LR S + A
Sbjct: 68 LLEALAQLREDQQVRVLLFRSAVKGVFCAGADLKEREQMSDVEVGTFVQRLRGLMSEIAA 127
Query: 64 LPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGK 123
P+PTIA +DG ALGGGLE+ALACDLRI +A++GL ET ++PGAGGTQRLPR +G
Sbjct: 128 FPVPTIAAMDGFALGGGLELALACDLRIAASSAVMGLIETTRGLLPGAGGTQRLPRCLGV 187
Query: 124 SVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ----AQLKALEIAQEI 167
++AK++IFTGR+++G A LGLVN+ V + A +AL +AQEI
Sbjct: 188 ALAKELIFTGRRLNGAQARELGLVNHAVAQNEEGNAAYHRALALAQEI 235
|
Mus musculus (taxid: 10090) |
| >sp|O34893|YNGF_BACSU Putative enoyl-CoA hydratase/isomerase YngF OS=Bacillus subtilis (strain 168) GN=yngF PE=3 SV=1 | Back alignment and function description |
|---|
Score = 161 bits (408), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 85/169 (50%), Positives = 117/169 (69%), Gaps = 1/169 (0%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKV-LQMSPSEIHFYVNTLRSTFS 59
MLR L+ + I +S+ V++ + K FCAGADLK +++ ++ V+ ++ T +
Sbjct: 32 MLRNLQMIIQEIEFNSNIRCVILTGTGEKAFCAGADLKERIKLKEDQVLESVSLIQRTAA 91
Query: 60 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 119
L+ALP P IA I+G+ALGGGLE+ALACDLRI EAA+LGLPETGLAIIPGAGGTQRLPR
Sbjct: 92 LLDALPQPVIAAINGSALGGGLELALACDLRIATEAAVLGLPETGLAIIPGAGGTQRLPR 151
Query: 120 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEIN 168
L+G+ AK+ I+TGR+V+ +A +GLV + KA E+A I+
Sbjct: 152 LIGRGKAKEFIYTGRRVTAHEAKEIGLVEHVTAPCDLMPKAEELAAAIS 200
|
Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|Q2TBT3|ECHD2_BOVIN Enoyl-CoA hydratase domain-containing protein 2, mitochondrial OS=Bos taurus GN=ECHDC2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 159 bits (402), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 85/168 (50%), Positives = 113/168 (67%), Gaps = 5/168 (2%)
Query: 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFSFLEA 63
L A + ED V++ RS V VFCAGADLK QMS +E+ +V LR + + A
Sbjct: 68 LLEALAQLREDRQVRVLIFRSGVKGVFCAGADLKEREQMSEAEVGLFVQRLRGLMTEIAA 127
Query: 64 LPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGK 123
P PTIA +DG ALGGGLE+ALACDLR+ +A++GL ET ++PGAGGTQRLPR +G
Sbjct: 128 FPAPTIAAMDGFALGGGLELALACDLRVAASSAVMGLIETTRGLLPGAGGTQRLPRCLGV 187
Query: 124 SVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ----AQLKALEIAQEI 167
++AK++IFTGR++SG A +LGLVN+ V + A +A +AQEI
Sbjct: 188 ALAKELIFTGRRLSGAQAQALGLVNHAVAQNEEGNAAYHRARALAQEI 235
|
Bos taurus (taxid: 9913) |
| >sp|Q86YB7|ECHD2_HUMAN Enoyl-CoA hydratase domain-containing protein 2, mitochondrial OS=Homo sapiens GN=ECHDC2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 156 bits (395), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 84/168 (50%), Positives = 112/168 (66%), Gaps = 5/168 (2%)
Query: 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFSFLEA 63
L + ED V++ RS V VFCAGADLK QMS +E+ +V LR + + A
Sbjct: 64 LLETLAQLREDRQVRVLLFRSGVKGVFCAGADLKEREQMSEAEVGVFVQRLRGLMNDIAA 123
Query: 64 LPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGK 123
P PTIA +DG ALGGGLE+ALACDLR+ +A++GL ET ++PGAGGTQRLPR +G
Sbjct: 124 FPAPTIAAMDGFALGGGLELALACDLRVAASSAVMGLIETTRGLLPGAGGTQRLPRCLGV 183
Query: 124 SVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ----AQLKALEIAQEI 167
++AK++IFTGR++SG +A LGLVN+ V + A +A +AQEI
Sbjct: 184 ALAKELIFTGRRLSGTEAHVLGLVNHAVAQNEEGDAAYQRARALAQEI 231
|
Homo sapiens (taxid: 9606) |
| >sp|A4YI89|HPCD_METS5 3-hydroxypropionyl-coenzyme A dehydratase OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=Msed_2001 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 139 bits (350), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 76/171 (44%), Positives = 104/171 (60%), Gaps = 2/171 (1%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFS 59
+L L A D V++I + K FCAGAD+ Q++P+E + R
Sbjct: 32 LLEELDRAVSQAESDPEIRVIII-TGKGKAFCAGADITQFNQLTPAEAWKFSKKGREIMD 90
Query: 60 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 119
+EAL PTIA+I+G ALGGGLE+ALACD+RI E A LGLPE L I PG GGTQRL R
Sbjct: 91 KIEALSKPTIAMINGYALGGGLELALACDIRIAAEEAQLGLPEINLGIYPGYGGTQRLTR 150
Query: 120 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
++GK A +++ TG ++ GKDA GLVN VP + + ++A++I +K
Sbjct: 151 VIGKGRALEMMMTGDRIPGKDAEKYGLVNRVVPLANLEQETRKLAEKIAKK 201
|
Plays a role in autotrophic carbon fixation via the 3-hydroxypropionate/4-hydroxybutyrate cycle. Catalyzes the reversible dehydration of 3-hydroxypropionyl-CoA to form acryloyl-CoA, and the reversible dehydration of (S)-3-hydroxybutyryl-CoA to form crotonyl-CoA. Inactive towards (R)-3-hydroxybutyryl-CoA. Metallosphaera sedula (strain ATCC 51363 / DSM 5348) (taxid: 399549) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 1 EC: 6 |
| >sp|Q13825|AUHM_HUMAN Methylglutaconyl-CoA hydratase, mitochondrial OS=Homo sapiens GN=AUH PE=1 SV=1 | Back alignment and function description |
|---|
Score = 136 bits (343), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 82/171 (47%), Positives = 120/171 (70%), Gaps = 5/171 (2%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLK-VLQMSPSEIHFYVNTLRSTFS 59
+++ L A + + D ++IRS VP +FCAGADLK +MS SE+ +V+ +R+ +
Sbjct: 107 LIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVIN 166
Query: 60 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 119
+ LP+PTIA IDG ALGGGLE+ALACD+R+ +A +GL ET LAIIPG GGTQRLPR
Sbjct: 167 DIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPR 226
Query: 120 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ----AQLKALEIAQE 166
+G S+AK++IF+ R + GK+A ++GL+++ + Q A KAL++A+E
Sbjct: 227 AIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLARE 277
|
Catalyzes the conversion of 3-methylglutaconyl-CoA to 3-hydroxy-3-methylglutaryl-CoA. Has very low enoyl-CoA hydratase activity. Was originally identified as RNA-binding protein that binds in vitro to clustered 5'-AUUUA-3' motifs. Homo sapiens (taxid: 9606) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 8 |
| >sp|Q9JLZ3|AUHM_MOUSE Methylglutaconyl-CoA hydratase, mitochondrial OS=Mus musculus GN=Auh PE=2 SV=1 | Back alignment and function description |
|---|
Score = 136 bits (343), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 82/171 (47%), Positives = 119/171 (69%), Gaps = 5/171 (2%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLK-VLQMSPSEIHFYVNTLRSTFS 59
+L+ L A + + D ++IRS VP +FCAGADLK +M SE+ +V+ +RS +
Sbjct: 82 LLKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMHSSEVGPFVSKIRSVIN 141
Query: 60 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 119
+ LP+PTIA IDG ALGGGLE+ALACD+R+ +A +GL ET LAIIPG GGTQRLPR
Sbjct: 142 DIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPR 201
Query: 120 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ----AQLKALEIAQE 166
+G S+AK++IF+ R + G++A ++GL+++ + Q A KAL++A+E
Sbjct: 202 AIGMSLAKELIFSARVLDGQEAKAVGLISHVLEQNQEGDAAYRKALDLARE 252
|
Catalyzes the conversion of 3-methylglutaconyl-CoA to 3-hydroxy-3-methylglutaryl-CoA. Has very low enoyl-CoA hydratase activity. Was originally identified as RNA-binding protein that binds in vitro to clustered 5'-AUUUA-3' motifs. Mus musculus (taxid: 10090) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 8 |
| >sp|C6DAL7|FADJ_PECCP Fatty acid oxidation complex subunit alpha OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=fadJ PE=3 SV=1 | Back alignment and function description |
|---|
Score = 123 bits (308), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 66/148 (44%), Positives = 89/148 (60%), Gaps = 4/148 (2%)
Query: 9 FETISEDSSANVVMIRSSVPKVFCAGADLKVLQM--SPSEIHFYVNTLRSTFSFLEALPI 66
FE + ++ +++ SS P F AGAD+ +L S + + TF + ALP
Sbjct: 53 FEQARQHATLRGLILISSKPDSFIAGADITMLNQCRSAEQAENLAKQGQETFEQIAALPF 112
Query: 67 PTIAVIDGAALGGGLEMALACDLRICG--EAALLGLPETGLAIIPGAGGTQRLPRLVGKS 124
P +A I GA LGGGLE+ALACD R+C E +LGLPE L ++PG+GGTQRLPRL+G
Sbjct: 113 PVVAAIHGACLGGGLELALACDYRVCSLDEKTVLGLPEVQLGLLPGSGGTQRLPRLIGLD 172
Query: 125 VAKDIIFTGRKVSGKDAMSLGLVNYYVP 152
A D+I TGR + A+ GLV+ VP
Sbjct: 173 SALDLILTGRHLRANQALRQGLVDEAVP 200
|
Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities. Pectobacterium carotovorum subsp. carotovorum (strain PC1) (taxid: 561230) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|Q6D2L7|FADJ_ERWCT Fatty acid oxidation complex subunit alpha OS=Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=fadJ PE=3 SV=1 | Back alignment and function description |
|---|
Score = 119 bits (299), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 96/166 (57%), Gaps = 4/166 (2%)
Query: 9 FETISEDSSANVVMIRSSVPKVFCAGADLKVLQM--SPSEIHFYVNTLRSTFSFLEALPI 66
FE + ++ ++ S+ P F AGAD+ +L S + + TF + ALP
Sbjct: 57 FELARQHATLRGLIFISAKPDSFIAGADITMLNKCSSAEQAENLAKQGQETFDQIAALPF 116
Query: 67 PTIAVIDGAALGGGLEMALACDLRICG--EAALLGLPETGLAIIPGAGGTQRLPRLVGKS 124
P +A I GA LGGGLE+ALACD R+C E +LGLPE L ++PG+GGTQRLPRL+G
Sbjct: 117 PVVAAIHGACLGGGLELALACDYRVCSLDEKTVLGLPEVQLGLLPGSGGTQRLPRLIGLD 176
Query: 125 VAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
A D+I TGR + A+ GLV+ VP A+EI ++ +K
Sbjct: 177 SALDLILTGRHLRAGQALRQGLVDEAVPHDILLDTAVEILKKGKRK 222
|
Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities. Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) (taxid: 218491) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 179 | ||||||
| 255583179 | 325 | Methylglutaconyl-CoA hydratase, mitochon | 0.949 | 0.523 | 0.789 | 2e-73 | |
| 296084644 | 644 | unnamed protein product [Vitis vinifera] | 0.949 | 0.263 | 0.777 | 6e-72 | |
| 449458986 | 328 | PREDICTED: methylglutaconyl-CoA hydratas | 0.949 | 0.518 | 0.771 | 1e-70 | |
| 359473869 | 295 | PREDICTED: methylglutaconyl-CoA hydratas | 0.949 | 0.576 | 0.777 | 2e-70 | |
| 224071169 | 229 | predicted protein [Populus trichocarpa] | 0.949 | 0.742 | 0.748 | 1e-67 | |
| 356563366 | 314 | PREDICTED: methylglutaconyl-CoA hydratas | 0.949 | 0.541 | 0.748 | 4e-66 | |
| 297800426 | 229 | enoyl-CoA hydratase [Arabidopsis lyrata | 0.949 | 0.742 | 0.719 | 3e-64 | |
| 20271005 | 229 | enoyl-CoA hydratase [Arabidopsis lyrata | 0.949 | 0.742 | 0.713 | 2e-63 | |
| 2245034 | 229 | enoyl-CoA hydratase [Arabidopsis thalian | 0.949 | 0.742 | 0.707 | 6e-63 | |
| 334186620 | 301 | enoyl-CoA hydratase [Arabidopsis thalian | 0.949 | 0.564 | 0.707 | 6e-63 |
| >gi|255583179|ref|XP_002532355.1| Methylglutaconyl-CoA hydratase, mitochondrial precursor, putative [Ricinus communis] gi|223527942|gb|EEF30028.1| Methylglutaconyl-CoA hydratase, mitochondrial precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 280 bits (715), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 135/171 (78%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MSPSEIHFYVNTLRSTFS 59
MLRGL++ FETI+ D+SANVVMI SSVPKVFCAGADLK + M+PSE+ F+VN+LRSTFS
Sbjct: 97 MLRGLRNTFETINNDASANVVMICSSVPKVFCAGADLKERKIMTPSEVQFFVNSLRSTFS 156
Query: 60 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 119
+E L IPTIAVI+GAALGGGLEMAL+CDLRICGE A+LGLPETGLAIIPGAGGTQRLPR
Sbjct: 157 LVEDLCIPTIAVIEGAALGGGLEMALSCDLRICGEDAVLGLPETGLAIIPGAGGTQRLPR 216
Query: 120 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
LVGKSVAK++IFTGRK+ G++AMS+GLVNY VPAG+A+LKALE+A+EINQK
Sbjct: 217 LVGKSVAKELIFTGRKIGGREAMSMGLVNYSVPAGEARLKALEVAREINQK 267
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296084644|emb|CBI25767.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 275 bits (703), Expect = 6e-72, Method: Composition-based stats.
Identities = 133/171 (77%), Positives = 153/171 (89%), Gaps = 1/171 (0%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MSPSEIHFYVNTLRSTFS 59
ML GL++ FE I+ D+SANVVM+ SSVP+VFCAGADLK + M+PSE F+VN+LRSTFS
Sbjct: 416 MLGGLQNIFEAINRDASANVVMLSSSVPRVFCAGADLKERKTMNPSETRFFVNSLRSTFS 475
Query: 60 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 119
LEAL +PTIAVI+GAALGGGLEMAL+CDLRICGE A+LGLPETGLAIIPGAGGTQRL R
Sbjct: 476 LLEALHVPTIAVIEGAALGGGLEMALSCDLRICGEDAVLGLPETGLAIIPGAGGTQRLSR 535
Query: 120 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
LVGKS+AK++IFTGRKV G+DAMS+GLVNY VPAG+A LKALEIAQ INQK
Sbjct: 536 LVGKSIAKELIFTGRKVGGRDAMSVGLVNYCVPAGEAHLKALEIAQHINQK 586
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449458986|ref|XP_004147227.1| PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial-like [Cucumis sativus] gi|449514688|ref|XP_004164451.1| PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 270 bits (691), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 132/171 (77%), Positives = 152/171 (88%), Gaps = 1/171 (0%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MSPSEIHFYVNTLRSTFS 59
MLRGL+HAFE++ D S NV+MIRSSVPKVFCAGADLK + M+ SE+H +V +LRS F+
Sbjct: 100 MLRGLRHAFESVDSDPSVNVMMIRSSVPKVFCAGADLKERKKMAASEVHSFVTSLRSAFT 159
Query: 60 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 119
FLEALPIPTI+VI+GAALGGGLEMALACDLRICGE A L LPETGLAIIPGAGGT RLPR
Sbjct: 160 FLEALPIPTISVIEGAALGGGLEMALACDLRICGEDAKLSLPETGLAIIPGAGGTARLPR 219
Query: 120 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
LVGKS+AK++IFTGRKVSG+DA+S+GLVNY V AG+A KALEIAQEIN+K
Sbjct: 220 LVGKSIAKELIFTGRKVSGRDALSIGLVNYCVSAGEAYTKALEIAQEINEK 270
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359473869|ref|XP_002267334.2| PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 270 bits (690), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 133/171 (77%), Positives = 153/171 (89%), Gaps = 1/171 (0%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MSPSEIHFYVNTLRSTFS 59
ML GL++ FE I+ D+SANVVM+ SSVP+VFCAGADLK + M+PSE F+VN+LRSTFS
Sbjct: 67 MLGGLQNIFEAINRDASANVVMLSSSVPRVFCAGADLKERKTMNPSETRFFVNSLRSTFS 126
Query: 60 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 119
LEAL +PTIAVI+GAALGGGLEMAL+CDLRICGE A+LGLPETGLAIIPGAGGTQRL R
Sbjct: 127 LLEALHVPTIAVIEGAALGGGLEMALSCDLRICGEDAVLGLPETGLAIIPGAGGTQRLSR 186
Query: 120 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
LVGKS+AK++IFTGRKV G+DAMS+GLVNY VPAG+A LKALEIAQ INQK
Sbjct: 187 LVGKSIAKELIFTGRKVGGRDAMSVGLVNYCVPAGEAHLKALEIAQHINQK 237
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224071169|ref|XP_002303368.1| predicted protein [Populus trichocarpa] gi|222840800|gb|EEE78347.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 260 bits (665), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 128/171 (74%), Positives = 150/171 (87%), Gaps = 1/171 (0%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MSPSEIHFYVNTLRSTFS 59
MLRGL++AFETI D SA VV+I SSVPKVFCAGADLK + M+PSE+ +VN+LRSTFS
Sbjct: 1 MLRGLRNAFETIESDESAQVVLICSSVPKVFCAGADLKERKTMTPSEVQNFVNSLRSTFS 60
Query: 60 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 119
F+EAL +PTIAVI+G ALGGGLEMAL+CDLRICGE A+LGLPETGLAIIPGAGGTQRLPR
Sbjct: 61 FIEALRVPTIAVIEGVALGGGLEMALSCDLRICGEDAVLGLPETGLAIIPGAGGTQRLPR 120
Query: 120 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
LVGKS+AK++IFTGRK+ G++AM +GL NY VPA +A KALEIA+EI QK
Sbjct: 121 LVGKSLAKELIFTGRKIGGREAMPMGLANYSVPASEAHSKALEIAREIIQK 171
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356563366|ref|XP_003549935.1| PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 255 bits (652), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 128/171 (74%), Positives = 145/171 (84%), Gaps = 1/171 (0%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MSPSEIHFYVNTLRSTFS 59
MLRGL AFE I++ S ANV MI SSVP VFCAGADLK + MS SE +V +LRSTFS
Sbjct: 86 MLRGLNQAFELINQKSYANVAMISSSVPGVFCAGADLKERRAMSQSEAKIFVKSLRSTFS 145
Query: 60 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 119
FLE + +PTIAVI+G ALGGGLEMALACD+RICGE AL+GLPETGLAIIPGAGGTQRLPR
Sbjct: 146 FLEDVRVPTIAVIEGVALGGGLEMALACDIRICGENALMGLPETGLAIIPGAGGTQRLPR 205
Query: 120 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
LVGK++AKDIIFTGRK+ GK+A+SLGLVNY VPAG+A KAL IA +INQK
Sbjct: 206 LVGKAIAKDIIFTGRKIDGKEALSLGLVNYCVPAGEAYSKALAIAHDINQK 256
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297800426|ref|XP_002868097.1| enoyl-CoA hydratase [Arabidopsis lyrata subsp. lyrata] gi|297313933|gb|EFH44356.1| enoyl-CoA hydratase [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 249 bits (636), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 123/171 (71%), Positives = 146/171 (85%), Gaps = 1/171 (0%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MSPSEIHFYVNTLRSTFS 59
ML+ L++AFE+I +DSSA VVMIRS VP VFCAGADLKV + MSPSE+H YVN+LR FS
Sbjct: 1 MLKSLQNAFESIQQDSSARVVMIRSLVPGVFCAGADLKVRRTMSPSEVHTYVNSLRYMFS 60
Query: 60 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 119
F+EAL IPTIA I+GAALGGGLEMALACDLRICGE A+ GLPETGLAIIPGAGGTQRL R
Sbjct: 61 FMEALSIPTIAAIEGAALGGGLEMALACDLRICGENAVFGLPETGLAIIPGAGGTQRLSR 120
Query: 120 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
LVG+SV+K++IFTGRK+ +A + GLVN V AG+A KA+E+AQ+IN+K
Sbjct: 121 LVGRSVSKELIFTGRKIDAIEAATKGLVNICVTAGEAHEKAIEMAQQINEK 171
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|20271005|gb|AAM18495.1|AF494369_1 enoyl-CoA hydratase [Arabidopsis lyrata subsp. petraea] | Back alignment and taxonomy information |
|---|
Score = 247 bits (630), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 122/171 (71%), Positives = 145/171 (84%), Gaps = 1/171 (0%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MSPSEIHFYVNTLRSTFS 59
ML+ L++AFE+I +DSSA VVMIRS VP VFCAGADLK + MSPSE+H YVN+LR FS
Sbjct: 1 MLKSLQNAFESIHQDSSARVVMIRSLVPGVFCAGADLKERRTMSPSEVHTYVNSLRYMFS 60
Query: 60 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 119
F+EAL IPTIA I+GAALGGGLEMALACDLRICGE A+ GLPETGLAIIPGAGGTQRL R
Sbjct: 61 FMEALSIPTIAAIEGAALGGGLEMALACDLRICGENAVFGLPETGLAIIPGAGGTQRLSR 120
Query: 120 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
LVG+SV+K++IFTGRK+ +A + GLVN V AG+A KA+E+AQ+IN+K
Sbjct: 121 LVGRSVSKELIFTGRKIDAIEAATKGLVNICVTAGEAHEKAIEMAQQINEK 171
|
Source: Arabidopsis lyrata subsp. petraea Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|2245034|emb|CAB10453.1| enoyl-CoA hydratase [Arabidopsis thaliana] gi|7268430|emb|CAB78722.1| enoyl-CoA hydratase [Arabidopsis thaliana] gi|22136626|gb|AAM91632.1| putative enoyl-CoA hydratase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 245 bits (625), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 121/171 (70%), Positives = 145/171 (84%), Gaps = 1/171 (0%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MSPSEIHFYVNTLRSTFS 59
ML+ L++AFE+I +D+SA VVMIRS VP VFCAGADLK + MSPSE+H YVN+LR FS
Sbjct: 1 MLKSLQNAFESIHQDNSARVVMIRSLVPGVFCAGADLKERRTMSPSEVHTYVNSLRYMFS 60
Query: 60 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 119
F+EAL IPTIA I+GAALGGGLEMALACDLRICGE A+ GLPETGLAIIPGAGGTQRL R
Sbjct: 61 FIEALSIPTIAAIEGAALGGGLEMALACDLRICGENAVFGLPETGLAIIPGAGGTQRLSR 120
Query: 120 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
LVG+SV+K++IFTGRK+ +A + GLVN V AG+A KA+E+AQ+IN+K
Sbjct: 121 LVGRSVSKELIFTGRKIDAIEAANKGLVNICVTAGEAHEKAIEMAQQINEK 171
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334186620|ref|NP_193413.2| enoyl-CoA hydratase [Arabidopsis thaliana] gi|332658405|gb|AEE83805.1| enoyl-CoA hydratase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 245 bits (625), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 121/171 (70%), Positives = 145/171 (84%), Gaps = 1/171 (0%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MSPSEIHFYVNTLRSTFS 59
ML+ L++AFE+I +D+SA VVMIRS VP VFCAGADLK + MSPSE+H YVN+LR FS
Sbjct: 73 MLKSLQNAFESIHQDNSARVVMIRSLVPGVFCAGADLKERRTMSPSEVHTYVNSLRYMFS 132
Query: 60 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 119
F+EAL IPTIA I+GAALGGGLEMALACDLRICGE A+ GLPETGLAIIPGAGGTQRL R
Sbjct: 133 FIEALSIPTIAAIEGAALGGGLEMALACDLRICGENAVFGLPETGLAIIPGAGGTQRLSR 192
Query: 120 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
LVG+SV+K++IFTGRK+ +A + GLVN V AG+A KA+E+AQ+IN+K
Sbjct: 193 LVGRSVSKELIFTGRKIDAIEAANKGLVNICVTAGEAHEKAIEMAQQINEK 243
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 179 | ||||||
| ZFIN|ZDB-GENE-030219-147 | 319 | echdc2 "enoyl CoA hydratase do | 0.910 | 0.510 | 0.458 | 1.1e-32 | |
| ZFIN|ZDB-GENE-040801-95 | 325 | auh "AU RNA binding protein/en | 0.905 | 0.498 | 0.461 | 1.1e-32 | |
| DICTYBASE|DDB_G0289471 | 303 | auh "methylglutaconyl-CoA hydr | 0.843 | 0.498 | 0.5 | 6e-32 | |
| TIGR_CMR|BA_2551 | 262 | BA_2551 "enoyl-CoA hydratase/i | 0.932 | 0.637 | 0.434 | 6e-32 | |
| UNIPROTKB|J9P2R5 | 340 | AUH "Uncharacterized protein" | 0.927 | 0.488 | 0.403 | 7.7e-32 | |
| UNIPROTKB|Q13825 | 339 | AUH "Methylglutaconyl-CoA hydr | 0.927 | 0.489 | 0.415 | 7.7e-32 | |
| MGI|MGI:1338011 | 314 | Auh "AU RNA binding protein/en | 0.927 | 0.528 | 0.415 | 2e-31 | |
| MGI|MGI:1289238 | 296 | Echdc2 "enoyl Coenzyme A hydra | 0.910 | 0.550 | 0.452 | 3.3e-31 | |
| UNIPROTKB|F1S750 | 252 | ECHDC2 "Uncharacterized protei | 0.910 | 0.646 | 0.446 | 6.9e-31 | |
| RGD|1306087 | 313 | Auh "AU RNA binding protein/en | 0.927 | 0.530 | 0.403 | 8.8e-31 |
| ZFIN|ZDB-GENE-030219-147 echdc2 "enoyl CoA hydratase domain containing 2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 77/168 (45%), Positives = 106/168 (63%)
Query: 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKV-LQMSPSEIHFYVNTLRSTFSFLEA 63
++ ++ DS+ V++ RS +P VFCAGADLK QMS +E +V+ LRS + + A
Sbjct: 91 MRDLVSSLQHDSAVRVLVFRSLIPGVFCAGADLKERAQMSNAEAELFVHGLRSLMNDIAA 150
Query: 64 LPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGK 123
LP+PTIA +D CDLR A +GL ET ++PGAGG+QRLPR VG
Sbjct: 151 LPMPTIAAVDGFALGGGLELALACDLRTAAHCAQMGLIETTRGLLPGAGGSQRLPRTVGF 210
Query: 124 SVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ----AQLKALEIAQEI 167
+VAK++IFTGR+V G+ A++LGLVN VP Q A +AL +A+EI
Sbjct: 211 AVAKELIFTGRRVGGEQAVNLGLVNRSVPQNQTGDAAHREALSLAREI 258
|
|
| ZFIN|ZDB-GENE-040801-95 auh "AU RNA binding protein/enoyl-Coenzyme A hydratase" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 77/167 (46%), Positives = 107/167 (64%)
Query: 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKV-LQMSPSEIHFYVNTLRSTFSFLEA 63
+ A E++ D++ V++ S VP +FCAGADLK +M SE+ +V R+ S L A
Sbjct: 97 MSEALESMKTDNTVRTVILCSMVPGIFCAGADLKERAKMQQSEVGPFVTKARTLISELGA 156
Query: 64 LPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGK 123
LP+PTIA ID CD+R+ +A +GL ET LAIIPGAGGTQRLPR VG
Sbjct: 157 LPMPTIAAIDGAALGGGLEMALACDIRVAANSAKMGLVETKLAIIPGAGGTQRLPRTVGV 216
Query: 124 SVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ----AQLKALEIAQE 166
S+AK++IF R ++G++A SLGLVN+ V + A L+AL++A+E
Sbjct: 217 SIAKELIFAARVINGEEAKSLGLVNHAVEQNKGGDAAYLRALDLARE 263
|
|
| DICTYBASE|DDB_G0289471 auh "methylglutaconyl-CoA hydratase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 76/152 (50%), Positives = 101/152 (66%)
Query: 20 VVMIRSSVPKVFCAGADLKVLQ-MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXX 78
VV++RS V VFC+GADLK MS E +V++LRS+F+ LE L +PTIA I+
Sbjct: 94 VVIVRSLVDGVFCSGADLKERALMSQVEASQFVHSLRSSFTELETLQMPTIAAIEGVAVG 153
Query: 79 XXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSG 138
CD R+ +++ +GLPETGLAIIPGAGGTQRLPRL+G AK++IFTG +
Sbjct: 154 GGTEMVLACDFRVASKSSKMGLPETGLAIIPGAGGTQRLPRLIGIPRAKELIFTGAILDS 213
Query: 139 KDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
K A+ +GLV Y G+A KA+EIA++I K
Sbjct: 214 KRALEIGLVQYETEKGEAFDKAIEIAKQIIPK 245
|
|
| TIGR_CMR|BA_2551 BA_2551 "enoyl-CoA hydratase/isomerase family protein" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 73/168 (43%), Positives = 105/168 (62%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MSPSEIHFYVNTLRSTFS 59
+L L++ I+E+++ VV++ + K FCAGADLK M+ ++ V+ +R+T
Sbjct: 34 LLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSMIRTTME 93
Query: 60 FLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 119
+E LP P IA I+ CD RI E+A LGL ET LAIIPGAGGTQRLPR
Sbjct: 94 MVEQLPQPVIAAINGIALGGGTELSLACDFRIAAESASLGLTETTLAIIPGAGGTQRLPR 153
Query: 120 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 167
L+G AK++I+TGR++S ++A GLV + VP + KA+EIA++I
Sbjct: 154 LIGVGRAKELIYTGRRISAQEAKEYGLVEFVVPVHLLEEKAIEIAEKI 201
|
|
| UNIPROTKB|J9P2R5 AUH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
Identities = 69/171 (40%), Positives = 109/171 (63%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKV-LQMSPSEIHFYVNTLRSTFS 59
+++ L A + + D +++RS VP +FCAGADLK ++M+PSE+ +V+ +R+
Sbjct: 108 LVKMLSKAVDALKSDKKVRTIIVRSEVPGIFCAGADLKERVKMNPSEVGPFVSKIRAVID 167
Query: 60 FLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 119
+ LP+PTIA ID CD+R+ +A +GL ET LAIIPG GGTQRLPR
Sbjct: 168 EIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPR 227
Query: 120 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ----AQLKALEIAQE 166
+G S+AK++IF+ R + G++A ++GL+++ + Q A KAL++A+E
Sbjct: 228 AIGMSLAKELIFSARVLDGQEAKAVGLISHVLEQNQEGDAAYRKALDLARE 278
|
|
| UNIPROTKB|Q13825 AUH "Methylglutaconyl-CoA hydratase, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
Identities = 71/171 (41%), Positives = 108/171 (63%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKV-LQMSPSEIHFYVNTLRSTFS 59
+++ L A + + D ++IRS VP +FCAGADLK +MS SE+ +V+ +R+ +
Sbjct: 107 LIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVIN 166
Query: 60 FLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 119
+ LP+PTIA ID CD+R+ +A +GL ET LAIIPG GGTQRLPR
Sbjct: 167 DIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPR 226
Query: 120 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ----AQLKALEIAQE 166
+G S+AK++IF+ R + GK+A ++GL+++ + Q A KAL++A+E
Sbjct: 227 AIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLARE 277
|
|
| MGI|MGI:1338011 Auh "AU RNA binding protein/enoyl-coenzyme A hydratase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
Identities = 71/171 (41%), Positives = 107/171 (62%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKV-LQMSPSEIHFYVNTLRSTFS 59
+L+ L A + + D ++IRS VP +FCAGADLK +M SE+ +V+ +RS +
Sbjct: 82 LLKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMHSSEVGPFVSKIRSVIN 141
Query: 60 FLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 119
+ LP+PTIA ID CD+R+ +A +GL ET LAIIPG GGTQRLPR
Sbjct: 142 DIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPR 201
Query: 120 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ----AQLKALEIAQE 166
+G S+AK++IF+ R + G++A ++GL+++ + Q A KAL++A+E
Sbjct: 202 AIGMSLAKELIFSARVLDGQEAKAVGLISHVLEQNQEGDAAYRKALDLARE 252
|
|
| MGI|MGI:1289238 Echdc2 "enoyl Coenzyme A hydratase domain containing 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
Identities = 76/168 (45%), Positives = 102/168 (60%)
Query: 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFSFLEA 63
L A + ED V++ RS+V VFCAGADLK QMS E+ +V LR S + A
Sbjct: 68 LLEALAQLREDQQVRVLLFRSAVKGVFCAGADLKEREQMSDVEVGTFVQRLRGLMSEIAA 127
Query: 64 LPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGK 123
P+PTIA +D CDLRI +A++GL ET ++PGAGGTQRLPR +G
Sbjct: 128 FPVPTIAAMDGFALGGGLELALACDLRIAASSAVMGLIETTRGLLPGAGGTQRLPRCLGV 187
Query: 124 SVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ----AQLKALEIAQEI 167
++AK++IFTGR+++G A LGLVN+ V + A +AL +AQEI
Sbjct: 188 ALAKELIFTGRRLNGAQARELGLVNHAVAQNEEGNAAYHRALALAQEI 235
|
|
| UNIPROTKB|F1S750 ECHDC2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 75/168 (44%), Positives = 102/168 (60%)
Query: 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFSFLEA 63
L A + ED V++ RS V VFCAGADLK QMS +E+ +V LR + + A
Sbjct: 24 LLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKEREQMSEAEVGVFVQRLRGLMNEIAA 83
Query: 64 LPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGK 123
P PTIA +D CDLR+ +A++GL ET ++PGAGGTQRLPR +G
Sbjct: 84 FPAPTIAAMDGFALGGGLELALACDLRVAASSAVMGLIETTRGLLPGAGGTQRLPRCLGV 143
Query: 124 SVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ----AQLKALEIAQEI 167
++AK++IFTGR++SG A +LGLVN+ V + A +AL +AQEI
Sbjct: 144 ALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAAYHRALALAQEI 191
|
|
| RGD|1306087 Auh "AU RNA binding protein/enoyl-CoA hydratase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 69/171 (40%), Positives = 107/171 (62%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKV-LQMSPSEIHFYVNTLRSTFS 59
+L+ L A + + D ++IRS VP +FCAGADLK +M SE+ +V+ +R+ +
Sbjct: 81 LLKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMHSSEVGPFVSKIRAVIN 140
Query: 60 FLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 119
+ LP+PTIA ID CD+R+ +A +GL ET LAIIPG GGTQRLPR
Sbjct: 141 DIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPR 200
Query: 120 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ----AQLKALEIAQE 166
+G ++AK++IF+ R + G++A ++GL+++ + Q A KAL++A+E
Sbjct: 201 AIGMALAKELIFSARVLDGQEAKAVGLISHVLEQNQEGDAAYRKALDLARE 251
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O34893 | YNGF_BACSU | No assigned EC number | 0.5029 | 0.9385 | 0.6461 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 179 | |||
| PLN02600 | 251 | PLN02600, PLN02600, enoyl-CoA hydratase | 1e-102 | |
| PRK07657 | 260 | PRK07657, PRK07657, enoyl-CoA hydratase; Provision | 9e-61 | |
| cd06558 | 195 | cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme | 2e-58 | |
| COG1024 | 257 | COG1024, CaiD, Enoyl-CoA hydratase/carnithine race | 6e-48 | |
| pfam00378 | 245 | pfam00378, ECH, Enoyl-CoA hydratase/isomerase fami | 3e-46 | |
| PRK06688 | 259 | PRK06688, PRK06688, enoyl-CoA hydratase; Provision | 8e-44 | |
| PRK07658 | 257 | PRK07658, PRK07658, enoyl-CoA hydratase; Provision | 4e-41 | |
| PRK11154 | 708 | PRK11154, fadJ, multifunctional fatty acid oxidati | 2e-39 | |
| PRK09076 | 258 | PRK09076, PRK09076, enoyl-CoA hydratase; Provision | 9e-39 | |
| PRK05809 | 260 | PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydrata | 2e-38 | |
| PRK11730 | 715 | PRK11730, fadB, multifunctional fatty acid oxidati | 6e-38 | |
| PRK08138 | 261 | PRK08138, PRK08138, enoyl-CoA hydratase; Provision | 3e-35 | |
| TIGR02440 | 699 | TIGR02440, FadJ, fatty oxidation complex, alpha su | 4e-33 | |
| PRK08150 | 255 | PRK08150, PRK08150, enoyl-CoA hydratase; Provision | 1e-32 | |
| PRK05862 | 257 | PRK05862, PRK05862, enoyl-CoA hydratase; Provision | 5e-32 | |
| TIGR02437 | 714 | TIGR02437, FadB, fatty oxidation complex, alpha su | 8e-32 | |
| PRK09674 | 255 | PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; | 1e-31 | |
| PRK08259 | 254 | PRK08259, PRK08259, enoyl-CoA hydratase; Provision | 1e-31 | |
| PRK06494 | 259 | PRK06494, PRK06494, enoyl-CoA hydratase; Provision | 1e-31 | |
| PRK06190 | 258 | PRK06190, PRK06190, enoyl-CoA hydratase; Provision | 5e-29 | |
| PRK03580 | 261 | PRK03580, PRK03580, carnitinyl-CoA dehydratase; Pr | 4e-28 | |
| PRK07799 | 263 | PRK07799, PRK07799, enoyl-CoA hydratase; Provision | 1e-27 | |
| PRK06144 | 262 | PRK06144, PRK06144, enoyl-CoA hydratase; Provision | 3e-27 | |
| PRK06127 | 269 | PRK06127, PRK06127, enoyl-CoA hydratase; Provision | 1e-26 | |
| PRK06210 | 272 | PRK06210, PRK06210, enoyl-CoA hydratase; Provision | 5e-26 | |
| PRK06143 | 256 | PRK06143, PRK06143, enoyl-CoA hydratase; Provision | 2e-25 | |
| PRK08252 | 254 | PRK08252, PRK08252, enoyl-CoA hydratase; Provision | 4e-25 | |
| TIGR02441 | 737 | TIGR02441, fa_ox_alpha_mit, fatty acid oxidation c | 4e-25 | |
| PRK07509 | 262 | PRK07509, PRK07509, enoyl-CoA hydratase; Provision | 5e-25 | |
| PRK05980 | 260 | PRK05980, PRK05980, enoyl-CoA hydratase; Provision | 1e-24 | |
| PRK06495 | 257 | PRK06495, PRK06495, enoyl-CoA hydratase; Provision | 9e-24 | |
| PRK09245 | 266 | PRK09245, PRK09245, enoyl-CoA hydratase; Provision | 1e-23 | |
| PRK06142 | 272 | PRK06142, PRK06142, enoyl-CoA hydratase; Provision | 1e-23 | |
| PRK07659 | 260 | PRK07659, PRK07659, enoyl-CoA hydratase; Provision | 3e-23 | |
| PRK05870 | 249 | PRK05870, PRK05870, enoyl-CoA hydratase; Provision | 6e-23 | |
| PRK05869 | 222 | PRK05869, PRK05869, enoyl-CoA hydratase; Validated | 2e-22 | |
| PRK05981 | 266 | PRK05981, PRK05981, enoyl-CoA hydratase; Provision | 5e-22 | |
| PLN02664 | 275 | PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-d | 2e-21 | |
| PRK07511 | 260 | PRK07511, PRK07511, enoyl-CoA hydratase; Provision | 4e-21 | |
| PRK08260 | 296 | PRK08260, PRK08260, enoyl-CoA hydratase; Provision | 4e-21 | |
| TIGR01929 | 259 | TIGR01929, menB, naphthoate synthase (dihydroxynap | 5e-21 | |
| PRK07110 | 249 | PRK07110, PRK07110, polyketide biosynthesis enoyl- | 5e-20 | |
| PRK07854 | 243 | PRK07854, PRK07854, enoyl-CoA hydratase; Provision | 1e-19 | |
| PLN02888 | 265 | PLN02888, PLN02888, enoyl-CoA hydratase | 2e-19 | |
| PRK09120 | 275 | PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydrata | 6e-19 | |
| PRK11423 | 261 | PRK11423, PRK11423, methylmalonyl-CoA decarboxylas | 8e-19 | |
| PRK05995 | 262 | PRK05995, PRK05995, enoyl-CoA hydratase; Provision | 1e-18 | |
| PRK05864 | 276 | PRK05864, PRK05864, enoyl-CoA hydratase; Provision | 5e-18 | |
| PRK08788 | 287 | PRK08788, PRK08788, enoyl-CoA hydratase; Validated | 2e-17 | |
| PRK07938 | 249 | PRK07938, PRK07938, enoyl-CoA hydratase; Provision | 4e-17 | |
| PRK08139 | 266 | PRK08139, PRK08139, enoyl-CoA hydratase; Validated | 6e-17 | |
| PRK05617 | 342 | PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrol | 6e-17 | |
| COG0447 | 282 | COG0447, MenB, Dihydroxynaphthoic acid synthase [C | 7e-17 | |
| TIGR02280 | 256 | TIGR02280, PaaB1, phenylacetate degradation probab | 1e-16 | |
| TIGR03210 | 256 | TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hyd | 1e-16 | |
| PRK08290 | 288 | PRK08290, PRK08290, enoyl-CoA hydratase; Provision | 1e-16 | |
| PRK07396 | 273 | PRK07396, PRK07396, dihydroxynaphthoic acid synthe | 3e-16 | |
| PRK08140 | 262 | PRK08140, PRK08140, enoyl-CoA hydratase; Provision | 4e-16 | |
| PRK08258 | 277 | PRK08258, PRK08258, enoyl-CoA hydratase; Provision | 1e-15 | |
| PRK07468 | 262 | PRK07468, PRK07468, enoyl-CoA hydratase; Provision | 2e-15 | |
| PLN03214 | 278 | PLN03214, PLN03214, probable enoyl-CoA hydratase/i | 3e-15 | |
| PLN02157 | 401 | PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrol | 3e-15 | |
| PRK05674 | 265 | PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydr | 3e-15 | |
| PRK08272 | 302 | PRK08272, PRK08272, enoyl-CoA hydratase; Provision | 4e-14 | |
| PLN02921 | 327 | PLN02921, PLN02921, naphthoate synthase | 6e-14 | |
| PRK08184 | 550 | PRK08184, PRK08184, benzoyl-CoA-dihydrodiol lyase; | 6e-13 | |
| PRK07260 | 255 | PRK07260, PRK07260, enoyl-CoA hydratase; Provision | 1e-12 | |
| PRK06563 | 255 | PRK06563, PRK06563, enoyl-CoA hydratase; Provision | 1e-12 | |
| PLN02851 | 407 | PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrol | 2e-12 | |
| PLN02988 | 381 | PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrol | 2e-12 | |
| TIGR03222 | 546 | TIGR03222, benzo_boxC, benzoyl-CoA-dihydrodiol lya | 4e-12 | |
| TIGR03189 | 251 | TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecar | 8e-12 | |
| PRK08321 | 302 | PRK08321, PRK08321, naphthoate synthase; Validated | 2e-11 | |
| PRK07327 | 268 | PRK07327, PRK07327, enoyl-CoA hydratase; Provision | 5e-11 | |
| PLN02874 | 379 | PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrol | 2e-09 | |
| TIGR03200 | 360 | TIGR03200, dearomat_oah, 6-oxocyclohex-1-ene-1-car | 2e-09 | |
| PRK07827 | 260 | PRK07827, PRK07827, enoyl-CoA hydratase; Provision | 5e-09 | |
| PLN02267 | 239 | PLN02267, PLN02267, enoyl-CoA hydratase/isomerase | 2e-08 | |
| PRK06023 | 251 | PRK06023, PRK06023, enoyl-CoA hydratase; Provision | 1e-07 | |
| PRK06072 | 248 | PRK06072, PRK06072, enoyl-CoA hydratase; Provision | 3e-07 | |
| PRK12478 | 298 | PRK12478, PRK12478, enoyl-CoA hydratase; Provision | 4e-07 | |
| PRK07112 | 255 | PRK07112, PRK07112, polyketide biosynthesis enoyl- | 5e-07 | |
| PRK06213 | 229 | PRK06213, PRK06213, enoyl-CoA hydratase; Provision | 3e-06 |
| >gnl|CDD|178210 PLN02600, PLN02600, enoyl-CoA hydratase | Back alignment and domain information |
|---|
Score = 294 bits (754), Expect = e-102
Identities = 127/171 (74%), Positives = 149/171 (87%), Gaps = 1/171 (0%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MSPSEIHFYVNTLRSTFS 59
MLRGL+ AFE I D+SA VVM+RSSVP VFCAGADLK + MSPSE+ +VN+LRSTFS
Sbjct: 23 MLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTFS 82
Query: 60 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 119
LEAL IPTIAV++GAALGGGLE+AL+CDLRICGE A+ GLPETGLAIIPGAGGTQRLPR
Sbjct: 83 SLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPR 142
Query: 120 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
LVG+S AK++IFTGR++ ++A S+GLVNY VPAG+A KALE+AQEINQK
Sbjct: 143 LVGRSRAKELIFTGRRIGAREAASMGLVNYCVPAGEAYEKALELAQEINQK 193
|
Length = 251 |
| >gnl|CDD|181069 PRK07657, PRK07657, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 188 bits (480), Expect = 9e-61
Identities = 85/168 (50%), Positives = 119/168 (70%), Gaps = 1/168 (0%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKV-LQMSPSEIHFYVNTLRSTFS 59
+L L++ I+E+++ VV++ + K FCAGADLK M+ ++ V+ +R+T
Sbjct: 32 LLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTTME 91
Query: 60 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 119
+E LP P IA I+G ALGGGLE+ALACD RI E+A LGL ET LAIIPGAGGTQRLPR
Sbjct: 92 MVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPR 151
Query: 120 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 167
L+G AK++I+TGR++S ++A +GLV + VPA + KA+EIA++I
Sbjct: 152 LIGVGRAKELIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAIEIAEKI 199
|
Length = 260 |
| >gnl|CDD|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily | Back alignment and domain information |
|---|
Score = 181 bits (461), Expect = 2e-58
Identities = 76/170 (44%), Positives = 104/170 (61%), Gaps = 4/170 (2%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSE---IHFYVNTLRST 57
ML L A + D VV++ + K FCAGADLK L ++ L+
Sbjct: 27 MLDELAAALDEAEADPDVRVVVLTGA-GKAFCAGADLKELAALSDAGEEARAFIRELQEL 85
Query: 58 FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRL 117
L LP P IA ++GAALGGGLE+ALACD+RI E A GLPE L ++PG GGTQRL
Sbjct: 86 LRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRL 145
Query: 118 PRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 167
PRLVG + A++++ TGR++S ++A+ LGLV+ VP + ALE+A+ +
Sbjct: 146 PRLVGPARARELLLTGRRISAEEALELGLVDEVVPDEELLAAALELARRL 195
|
This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. Length = 195 |
| >gnl|CDD|223955 COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 156 bits (395), Expect = 6e-48
Identities = 73/170 (42%), Positives = 99/170 (58%), Gaps = 4/170 (2%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHF--YVNTLRSTF 58
ML L A + D VV++ + K F AGADLK L + +
Sbjct: 33 MLDELAEALDEAEADPDVRVVVLTGA-GKAFSAGADLKELLSPEDGNAAENLMQPGQDLL 91
Query: 59 SFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLP 118
L LP P IA ++G ALGGGLE+ALACD+RI E A GLPE L ++PG GGTQRLP
Sbjct: 92 RALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLP 151
Query: 119 RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVP-AGQAQLKALEIAQEI 167
RL+G+ AK+++ TG +S +A+ LGLV+ VP A + +ALE+A+ +
Sbjct: 152 RLLGRGRAKELLLTGEPISAAEALELGLVDEVVPDAEELLERALELARRL 201
|
Length = 257 |
| >gnl|CDD|201191 pfam00378, ECH, Enoyl-CoA hydratase/isomerase family | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 3e-46
Identities = 73/171 (42%), Positives = 106/171 (61%), Gaps = 2/171 (1%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFS 59
+L L A E + +D S +++ P F AGAD+K + ++ + + +S
Sbjct: 26 LLTELIQALEKLEQDPSVKAIVLTGG-PGAFSAGADIKEMAAEPLAQQAQFSLEAQDLWS 84
Query: 60 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 119
LE LP P IA ++G ALGGGLE+ALACD RI + A GLPE L IIPGAGGTQRLPR
Sbjct: 85 RLEDLPKPVIAAVNGYALGGGLELALACDYRIAADNAKFGLPEVKLGIIPGAGGTQRLPR 144
Query: 120 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
++G S A +++ TGR++ ++A+ +GLV+ VP Q +A+E+AQ + K
Sbjct: 145 IIGVSAALEMLLTGRRIRAQEALKMGLVDKVVPEEQLVEEAIELAQRLADK 195
|
This family contains a diverse set of enzymes including: Enoyl-CoA hydratase. Napthoate synthase. Carnitate racemase. 3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA delta-isomerase. Length = 245 |
| >gnl|CDD|235852 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 8e-44
Identities = 59/179 (32%), Positives = 95/179 (53%), Gaps = 7/179 (3%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSF 60
M + L A E + D + VV++ + + F AG D+K +P + + L F
Sbjct: 33 MYQALADALEAAATDPAVRVVVLTGA-GRAFSAGGDIKDFPKAPPKPP---DELAPVNRF 88
Query: 61 LEAL---PIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRL 117
L A+ P P +A ++G A+G G+ +ALACDL E+A LP L + P AGG+ L
Sbjct: 89 LRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALL 148
Query: 118 PRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFR 176
PRL+G++ A +++ G +S ++A+ +GLVN VPA + +A A ++ S R
Sbjct: 149 PRLIGRARAAEMLLLGEPLSAEEALRIGLVNRVVPAAELDAEADAQAAKLAAGPASALR 207
|
Length = 259 |
| >gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 4e-41
Identities = 65/171 (38%), Positives = 93/171 (54%), Gaps = 3/171 (1%)
Query: 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ--MSPSEIHFYVNTLRSTFS 59
L L + + +D + VV+I + F AGAD+K + + TF
Sbjct: 30 LHELSELLDQVEKDDNVRVVVIHGE-GRFFSAGADIKEFTSVTEAEQATELAQLGQVTFE 88
Query: 60 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 119
+E P IA I GAALGGGLE+A++C +R E+A LGLPE L +IPG GTQRLPR
Sbjct: 89 RVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPR 148
Query: 120 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
VGK+ A +++ T ++G +A+ GLVN P A ++A++I K
Sbjct: 149 YVGKAKALEMMLTSEPITGAEALKWGLVNGVFPEETLLDDAKKLAKKIAGK 199
|
Length = 257 |
| >gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 2e-39
Identities = 73/170 (42%), Positives = 103/170 (60%), Gaps = 8/170 (4%)
Query: 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPS--EIHFYVNTLRSTFSFLE 62
++ + + ED V+ S P F AGAD+ +L + E + F+ +E
Sbjct: 39 VRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEALARQGQQLFAEIE 98
Query: 63 ALPIPTIAVIDGAALGGGLEMALACDLRICGEAA--LLGLPETGLAIIPGAGGTQRLPRL 120
ALPIP +A I GA LGGGLE+ALAC R+C + +LGLPE L ++PG+GGTQRLPRL
Sbjct: 99 ALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRL 158
Query: 121 VGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
+G S A D+I TG+++ K A+ LGLV+ VP + L LE+A E+ +K
Sbjct: 159 IGVSTALDMILTGKQLRAKQALKLGLVDDVVP--HSIL--LEVAVELAKK 204
|
Length = 708 |
| >gnl|CDD|236373 PRK09076, PRK09076, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 132 bits (335), Expect = 9e-39
Identities = 69/183 (37%), Positives = 96/183 (52%), Gaps = 18/183 (9%)
Query: 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKV---------LQMSPSEIHFYVN 52
L+ LK ++ D ++I K F AGADL + +M+ F
Sbjct: 31 LQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMA---RRF--- 84
Query: 53 TLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAG 112
F L A +IA I+G A+GGGLE ALACD+RI E A + LPE + ++P AG
Sbjct: 85 --GEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAG 142
Query: 113 GTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI-NQKV 171
GTQ LP LVG+ AK +I G +V A+ +GLV V G+A+ AL +AQ++ NQ
Sbjct: 143 GTQNLPWLVGEGWAKRMILCGERVDAATALRIGLVEEVVEKGEAREAALALAQKVANQSP 202
Query: 172 QSV 174
+V
Sbjct: 203 SAV 205
|
Length = 258 |
| >gnl|CDD|180270 PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydratase; Validated | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 2e-38
Identities = 65/167 (38%), Positives = 96/167 (57%), Gaps = 1/167 (0%)
Query: 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MSPSEIHFYVNTLRSTFSF 60
L+ L + I D + V++ + K F AGAD+ ++ ++ E + F
Sbjct: 33 LKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVFRK 92
Query: 61 LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRL 120
LE L P IA I+G ALGGG E+++ACD+RI E A G PE GL I PG GGTQRL R+
Sbjct: 93 LENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARI 152
Query: 121 VGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 167
VG AK++I+TG ++ ++A+ +GLVN V + +A +A +I
Sbjct: 153 VGPGKAKELIYTGDMINAEEALRIGLVNKVVEPEKLMEEAKALANKI 199
|
Length = 260 |
| >gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 6e-38
Identities = 62/166 (37%), Positives = 91/166 (54%), Gaps = 5/166 (3%)
Query: 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGAD----LKVLQMSPSEIHFYVNTLRSTFSF 60
L A + + S +++ S+ F GAD L + E+ +++ S F+
Sbjct: 39 LGEALDALEAQSDLKGLLLTSAKD-AFIVGADITEFLSLFAAPEEELSQWLHFANSIFNR 97
Query: 61 LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRL 120
LE LP+PT+A I+G ALGGG E LA D R+ A +GLPET L I+PG GGT RLPRL
Sbjct: 98 LEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRL 157
Query: 121 VGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQE 166
+G A + I G+ V +DA+ +G V+ V + Q AL + ++
Sbjct: 158 IGADNALEWIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQ 203
|
Length = 715 |
| >gnl|CDD|236162 PRK08138, PRK08138, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 3e-35
Identities = 67/167 (40%), Positives = 95/167 (56%), Gaps = 10/167 (5%)
Query: 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFSFLEA 63
L F +SED +++ KVF AGAD+K E++ LR T + EA
Sbjct: 40 LAEHFTELSEDPDIRAIVLTGG-EKVFAAGADIKEFATAGAIEMY-----LRHTERYWEA 93
Query: 64 L---PIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRL 120
+ P P IA ++G ALGGG E+A+ D+ + GE+A G PE + ++PGAGGTQRL R
Sbjct: 94 IAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRA 153
Query: 121 VGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 167
VGK A + TG V +A+++GLV+ V Q +ALE+A+EI
Sbjct: 154 VGKFKAMRMALTGCMVPAPEALAIGLVSEVVEDEQTLPRALELAREI 200
|
Length = 261 |
| >gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 4e-33
Identities = 67/145 (46%), Positives = 91/145 (62%), Gaps = 4/145 (2%)
Query: 12 ISEDSSANVVMIRSSVPKVFCAGADLKVLQ--MSPSEIHFYVNTLRSTFSFLEALPIPTI 69
+ D S +++ S P F AGAD+ +L + E + F+ LEALPIP +
Sbjct: 41 LKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALAQQGQVLFAELEALPIPVV 100
Query: 70 AVIDGAALGGGLEMALACDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAK 127
A I GA LGGGLE+ALAC R+C + +LGLPE L ++PG+GGTQRLPRL+G S A
Sbjct: 101 AAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTAL 160
Query: 128 DIIFTGRKVSGKDAMSLGLVNYYVP 152
D+I TG+++ K A+ LGLV+ VP
Sbjct: 161 DMILTGKQLRAKQALKLGLVDDVVP 185
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog model [Fatty acid and phospholipid metabolism, Degradation]. Length = 699 |
| >gnl|CDD|181254 PRK08150, PRK08150, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 1e-32
Identities = 60/166 (36%), Positives = 86/166 (51%), Gaps = 4/166 (2%)
Query: 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MSPSEIHFYVNTLRSTFSFLEA 63
L+ AF + E A V+ FCAG DL L+ E + F ++
Sbjct: 34 LRAAFARLPEGVRAVVL---HGEGDHFCAGLDLSELRERDAGEGMHHSRRWHRVFDKIQY 90
Query: 64 LPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGK 123
+P IA + GA +GGGLE+A A +R+ E+ LPE I G GG+ R+PRL+G
Sbjct: 91 GRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGV 150
Query: 124 SVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQ 169
+ D++ TGR ++ LGL Y VPAG+A KA+E+A+ I Q
Sbjct: 151 ARMTDMMLTGRVYDAQEGERLGLAQYLVPAGEALDKAMELARRIAQ 196
|
Length = 255 |
| >gnl|CDD|180295 PRK05862, PRK05862, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 5e-32
Identities = 60/167 (35%), Positives = 86/167 (51%), Gaps = 2/167 (1%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSF 60
++ L A D ++I S K F AGAD+K + S + Y + +
Sbjct: 32 LMDELGAALAAFDADEGIGAIVITGS-EKAFAAGADIKEMA-DLSFMDVYKGDYITNWEK 89
Query: 61 LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRL 120
+ + P IA + G ALGGG E+A+ CD+ I + A G PE L ++PG GG+QRL R
Sbjct: 90 VARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRA 149
Query: 121 VGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 167
VGK+ A D+ TGR + +A GLV+ VPA + +AL A I
Sbjct: 150 VGKAKAMDLCLTGRMMDAAEAERAGLVSRVVPADKLLDEALAAATTI 196
|
Length = 257 |
| >gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 8e-32
Identities = 68/175 (38%), Positives = 98/175 (56%), Gaps = 6/175 (3%)
Query: 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGAD----LKVLQMSPSEIHFYVNTLRST 57
L L A + I SS V++ S F GAD L + + +E+ ++ S
Sbjct: 36 LASLDQALDAIKAQSSLKGVILTSG-KDAFIVGADITEFLGLFALPDAELIQWLLFANSI 94
Query: 58 FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRL 117
F+ LE LP+PT+A I+G ALGGG E LA D RI + A +GLPET L I+PG GGT RL
Sbjct: 95 FNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRL 154
Query: 118 PRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALE-IAQEINQKV 171
PR++G A + I +G++ +DA+ +G V+ V A + AL+ + IN K+
Sbjct: 155 PRVIGADNALEWIASGKENRAEDALKVGAVDAVVTADKLGAAALQLLKDAINGKL 209
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399 [Fatty acid and phospholipid metabolism, Degradation]. Length = 714 |
| >gnl|CDD|182026 PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 1e-31
Identities = 67/171 (39%), Positives = 98/171 (57%), Gaps = 4/171 (2%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLR-STFS 59
+L L + E + D+S V +I + + F AGADL +M+ ++ +N R +
Sbjct: 30 LLTQLVNELEAAATDTSIGVCVITGN-ARFFAAGADLN--EMAEKDLAATLNDPRPQLWQ 86
Query: 60 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 119
L+A P IA ++G ALG G E+AL CD+ I GE A GLPE L I+PGAGGTQRL R
Sbjct: 87 RLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIR 146
Query: 120 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
VGKS+A ++ TG ++ + A GLV+ P +AL++A +I +
Sbjct: 147 SVGKSLASQMVLTGESITAQQAQQAGLVSEVFPPELTLERALQLASKIARH 197
|
Length = 255 |
| >gnl|CDD|236205 PRK08259, PRK08259, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 1e-31
Identities = 68/181 (37%), Positives = 91/181 (50%), Gaps = 34/181 (18%)
Query: 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ--------------MSPSEIH 48
L AF D +A+V ++ FCAGADLK + M PS +
Sbjct: 33 AALADAFRAFDADDAASVAVL-WGAGGTFCAGADLKAVGTGRGNRLHPSGDGPMGPSRM- 90
Query: 49 FYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGL--PETGLA 106
L P IA + G A+ GGLE+AL CDLR+ E A+ G+ G+
Sbjct: 91 --------------RLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVP 136
Query: 107 IIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQE 166
+I G GT RLPRL+G S A D+I TGR V +A+++GL N VP GQA+ A E+A E
Sbjct: 137 LIDG--GTVRLPRLIGHSRAMDLILTGRPVDADEALAIGLANRVVPKGQARAAAEELAAE 194
Query: 167 I 167
+
Sbjct: 195 L 195
|
Length = 254 |
| >gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 1e-31
Identities = 60/166 (36%), Positives = 83/166 (50%), Gaps = 8/166 (4%)
Query: 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEA- 63
L+ F+ + D V ++ + K F AG DLK S F L +
Sbjct: 36 LEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGK-----RGWPESGFGGLTSR 90
Query: 64 --LPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLV 121
L P IA ++G A+GGG E+ALACDL + E A LPE + + AGG RLPR +
Sbjct: 91 FDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQI 150
Query: 122 GKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 167
G A +I TGR+V+ ++ + LG VN VPAG+ A A +I
Sbjct: 151 GLKRAMGMILTGRRVTAREGLELGFVNEVVPAGELLAAAERWADDI 196
|
Length = 259 |
| >gnl|CDD|235733 PRK06190, PRK06190, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 5e-29
Identities = 60/180 (33%), Positives = 87/180 (48%), Gaps = 4/180 (2%)
Query: 3 RGLKHA-FETISE-DSSANV-VMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFS 59
L+ A F ++E D+ +V V++ + FCAG DLK L S + L +
Sbjct: 30 AALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAY-GAQDALPNPSP 88
Query: 60 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 119
A+ P I I+GAA+ GGLE+ALACD+ I E A + I+PG G + RLP+
Sbjct: 89 AWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQ 148
Query: 120 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 179
VG A+ + TG + DA+ GLV VP + +A +A I + R L
Sbjct: 149 KVGIGRARRMSLTGDFLDAADALRAGLVTEVVPHDELLPRARRLAASIAGNNPAAVRALK 208
|
Length = 258 |
| >gnl|CDD|179599 PRK03580, PRK03580, carnitinyl-CoA dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 4e-28
Identities = 52/165 (31%), Positives = 86/165 (52%)
Query: 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLE 62
+ F +D V +I + K F AG DLK + + + + +
Sbjct: 32 FAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIF 91
Query: 63 ALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVG 122
L P IA ++G A GGG E+ALA D +C + A LPE L I+P +GG RLP+ +
Sbjct: 92 DLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLP 151
Query: 123 KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 167
++A +++ TGR++ ++A+ G+VN VP + +A E+AQ++
Sbjct: 152 PAIANEMVMTGRRMDAEEALRWGIVNRVVPQAELMDRARELAQQL 196
|
Length = 261 |
| >gnl|CDD|181122 PRK07799, PRK07799, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 1e-27
Identities = 64/190 (33%), Positives = 95/190 (50%), Gaps = 21/190 (11%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPK----VFCAGADLKVLQMSPSEIHFYVNTLRS 56
MLR + A++ + D IRS + FCAG DLK P F
Sbjct: 33 MLRIMVDAWDRVDNDPD-----IRSCILTGAGGAFCAGMDLKAATKKPPGDSF--KDGSY 85
Query: 57 TFSFLEAL------PIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPG 110
S ++AL P IA ++G A+ GG E+ D+R+ GE+A G+ E ++ P
Sbjct: 86 DPSRIDALLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPM 145
Query: 111 AGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
G RL R + +VA D++ TGR ++ +A +GL+ + VP GQA KALE+A+ IN
Sbjct: 146 GGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEIGLIGHVVPDGQALDKALELAELINAN 205
Query: 171 ----VQSVFR 176
VQ++ R
Sbjct: 206 GPLAVQAILR 215
|
Length = 263 |
| >gnl|CDD|180424 PRK06144, PRK06144, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 3e-27
Identities = 57/171 (33%), Positives = 83/171 (48%), Gaps = 9/171 (5%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQM--SPSEIHFYVNTLRSTF 58
M GL E I+ D S V++R + K F AG D+ + + + Y +
Sbjct: 36 MYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERRIDRVL 95
Query: 59 SFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPG----AGGT 114
LE L +PTIA I GA +GGG +A ACDLRI +A G P +A G
Sbjct: 96 GALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFP---IARTLGNCLSMSNL 152
Query: 115 QRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQ 165
RL L+G + KD++FT R + ++A++ GLVN V +A +A+
Sbjct: 153 ARLVALLGAARVKDMLFTARLLEAEEALAAGLVNEVVEDAALDARADALAE 203
|
Length = 262 |
| >gnl|CDD|235705 PRK06127, PRK06127, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 1e-26
Identities = 53/170 (31%), Positives = 82/170 (48%), Gaps = 3/170 (1%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMS---PSEIHFYVNTLRST 57
M L A +D + VV++ + K F +GAD+ + S + Y + +
Sbjct: 39 MWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVAAYEQAVEAA 98
Query: 58 FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRL 117
+ L PTIA I G +GGG+ +ALACD+RI E + G+P L + G G + L
Sbjct: 99 QAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNL 158
Query: 118 PRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 167
LVG S AKD+ +T R+ +A+ +GLV+ A + + A I
Sbjct: 159 VDLVGPSAAKDLFYTARRFDAAEALRIGLVHRVTAADDLETALADYAATI 208
|
Length = 269 |
| >gnl|CDD|180472 PRK06210, PRK06210, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 99.8 bits (249), Expect = 5e-26
Identities = 54/178 (30%), Positives = 86/178 (48%), Gaps = 12/178 (6%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MSPSEIHFYVNT------ 53
M + A + D + V+++ + + FCAGAD+ LQ + PS+ +
Sbjct: 34 MEAEVYAAMDRAEADPAVRVIVLTGA-GRGFCAGADMGELQTIDPSDGRRDTDVRPFVGN 92
Query: 54 ----LRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIP 109
++ + FL AL P IA I+GA G GL AL CD+R + A +I
Sbjct: 93 RRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIA 152
Query: 110 GAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 167
G + LPRLVG + A D++ + R ++A+ LGLVN VP + + L A+++
Sbjct: 153 EHGISWILPRLVGHANALDLLLSARTFYAEEALRLGLVNRVVPPDELMERTLAYAEDL 210
|
Length = 272 |
| >gnl|CDD|180423 PRK06143, PRK06143, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 2e-25
Identities = 51/155 (32%), Positives = 80/155 (51%), Gaps = 2/155 (1%)
Query: 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFSF 60
+ L A ++ D V+++R + K F GAD+K + + + +++ LR
Sbjct: 36 ILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISRLRDLCDA 95
Query: 61 LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRL 120
+ P+P IA I G LGGGLE+A ACDLRI A G+PE + IP LPRL
Sbjct: 96 VRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVG-IPSVIHAALLPRL 154
Query: 121 VGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 155
+G + + ++ TG + A++ GLV+ VP +
Sbjct: 155 IGWARTRWLLLTGETIDAAQALAWGLVDRVVPLAE 189
|
Length = 256 |
| >gnl|CDD|181325 PRK08252, PRK08252, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 4e-25
Identities = 54/139 (38%), Positives = 70/139 (50%), Gaps = 7/139 (5%)
Query: 31 FCAGADLK-VLQMSPSEIHFYVNTLRSTFSFLEALPI-PTIAVIDGAALGGGLEMALACD 88
FCAG DLK + I R E P P IA ++G AL GG E+ALACD
Sbjct: 60 FCAGMDLKAFARGERPSIPG-----RGFGGLTERPPRKPLIAAVEGYALAGGFELALACD 114
Query: 89 LRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVN 148
L + A GLPE ++ GG RLPR + +A ++ TG ++ + A LGLVN
Sbjct: 115 LIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELALTGDMLTAERAHELGLVN 174
Query: 149 YYVPAGQAQLKALEIAQEI 167
GQA ALE+A+ I
Sbjct: 175 RLTEPGQALDAALELAERI 193
|
Length = 254 |
| >gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 4e-25
Identities = 62/182 (34%), Positives = 93/182 (51%), Gaps = 17/182 (9%)
Query: 12 ISEDSSANVVMIRSSVPKVFCAGADLKVLQM--SPSEIHFYVNTLRSTFSFLEALPIPTI 69
+ + + ++ S P F AGAD++++ + E+ + F +E P +
Sbjct: 53 LWTNEAIKSAVLISGKPGSFVAGADIQMIAACKTAQEVTQLSQEGQEMFERIEKSQKPIV 112
Query: 70 AVIDGAALGGGLEMALACDLRIC--GEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAK 127
A I G+ LGGGLE+ALAC RI LLGLPE L ++PGAGGTQRLP+L G A
Sbjct: 113 AAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTGVPAAL 172
Query: 128 DIIFTGRKVSGKDAMSLGLVNYYV--------PAGQAQLKALE-----IAQEINQKVQSV 174
D++ TG+K+ A +G+V+ V PA + ++ LE AQ + S+
Sbjct: 173 DMMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANGKLSI 232
Query: 175 FR 176
R
Sbjct: 233 NR 234
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human , pig , and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). Length = 737 |
| >gnl|CDD|181008 PRK07509, PRK07509, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 96.9 bits (242), Expect = 5e-25
Identities = 59/185 (31%), Positives = 86/185 (46%), Gaps = 25/185 (13%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEI--HFYVNTLRSTF 58
M L + + +D V I S FCAG D+K + SP + +
Sbjct: 31 MFEELIATIKRLKKDRGIRAV-ILSGEGGAFCAGLDVKSVASSPGNAVKLLFKRLPGNAN 89
Query: 59 SFLEA------LPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAI----- 107
LP+P IA ++G GGGL++AL D+RI AA P+T L+I
Sbjct: 90 LAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRI---AA----PDTKLSIMEAKW 142
Query: 108 --IPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQ 165
+P GT L LV K VA+++ +T R S ++A+ LGLV + A AL +A+
Sbjct: 143 GLVPDMAGTVSLRGLVRKDVARELTYTARVFSAEEALELGLVTHVSDDPLA--AALALAR 200
Query: 166 EINQK 170
EI Q+
Sbjct: 201 EIAQR 205
|
Length = 262 |
| >gnl|CDD|180335 PRK05980, PRK05980, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 96.0 bits (239), Expect = 1e-24
Identities = 58/161 (36%), Positives = 83/161 (51%), Gaps = 5/161 (3%)
Query: 12 ISEDSSANVVMIRSSVPKVFCAGADL-----KVLQMSPSEIHFYVNTLRSTFSFLEALPI 66
I D S V++ + + F AGAD+ V + + +V ++ + LEA P
Sbjct: 42 IEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALRDFVRRGQAMTARLEAFPK 101
Query: 67 PTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVA 126
P IA ++G A GGG E+ A L I E AL PE L + P GGTQRLPRL G+ A
Sbjct: 102 PVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRA 161
Query: 127 KDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 167
+++ TG S + A+ +GLVN VP + A +A+ I
Sbjct: 162 LELLLTGDAFSAERALEIGLVNAVVPHEELLPAARALARRI 202
|
Length = 260 |
| >gnl|CDD|168580 PRK06495, PRK06495, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 9e-24
Identities = 56/173 (32%), Positives = 88/173 (50%), Gaps = 7/173 (4%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLK---VLQMSPSEIHFYVNTLRST 57
+ L F+ ISE VV + + KVFCAGADLK + P ++ + R
Sbjct: 31 LRDELIAVFDEISERPDVRVV-VLTGAGKVFCAGADLKGRPDVIKGPGDLRAHNRRTREC 89
Query: 58 FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRL 117
F + P IA ++G ALG GL + +CD+ + E A+ GLPE + + AGG +
Sbjct: 90 FHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGL---AGGGKHA 146
Query: 118 PRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
RL G S+ + ++ TG +V + G++ +P + +A+EIA+EI K
Sbjct: 147 MRLFGHSLTRRMMLTGYRVPAAELYRRGVIEACLPPEELMPEAMEIAREIASK 199
|
Length = 257 |
| >gnl|CDD|181723 PRK09245, PRK09245, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 1e-23
Identities = 54/168 (32%), Positives = 84/168 (50%), Gaps = 9/168 (5%)
Query: 8 AFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-------MSPSEIHF-YVNTLRSTFS 59
A I+ D S V I + F +G ++K ++ SP++I Y + ++
Sbjct: 39 ACAAINADRSVRAV-ILTGAGTAFSSGGNVKDMRARVGAFGGSPADIRQGYRHGIQRIPL 97
Query: 60 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 119
L L +P IA ++G A+G G ++A CD+RI E A L +IPG GG LPR
Sbjct: 98 ALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPR 157
Query: 120 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 167
++G + A ++ FTG + A+ GLV+ VPA Q A +A+ I
Sbjct: 158 IIGMARAAEMAFTGDAIDAATALEWGLVSRVVPADQLLPAARALAERI 205
|
Length = 266 |
| >gnl|CDD|235714 PRK06142, PRK06142, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 1e-23
Identities = 46/180 (25%), Positives = 75/180 (41%), Gaps = 14/180 (7%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEI------------H 48
L F + D V++ S K F G DL + ++
Sbjct: 34 FWSELPEIFRWLDADPEVRAVVLSGS-GKHFSYGIDLPAMAGVFGQLGKDGLARPRTDLR 92
Query: 49 FYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAII 108
+ L++ + + P IA + G +GGG+++ ACD+R A + E L ++
Sbjct: 93 REILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMV 152
Query: 109 PGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK-ALEIAQEI 167
G QRLPR++G +++ TGR + +A +GLVN A L A A+EI
Sbjct: 153 ADVGSLQRLPRIIGDGHLRELALTGRDIDAAEAEKIGLVNRVYDDADALLAAAHATAREI 212
|
Length = 272 |
| >gnl|CDD|236073 PRK07659, PRK07659, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 3e-23
Identities = 54/164 (32%), Positives = 89/164 (54%), Gaps = 7/164 (4%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL--QMSPSEIHFYVNTLRSTF 58
ML+ L A + + +SSA++V++R + + F AG D+K++ S+ +NT+
Sbjct: 34 MLKELLQALKEV-AESSAHIVVLRGN-GRGFSAGGDIKMMLSSNDESKFDGVMNTISEIV 91
Query: 59 SFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLP 118
L +P TI+ I G A G GL +AL D I +A L + G+ +IP GG L
Sbjct: 92 VTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQ 151
Query: 119 RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYV---PAGQAQLK 159
+ VG++ AK II+ G+K+S +A+ LGL++ + A+ K
Sbjct: 152 KRVGENKAKQIIWEGKKLSATEALDLGLIDEVIGGDFQTAAKQK 195
|
Length = 260 |
| >gnl|CDD|180298 PRK05870, PRK05870, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 91.3 bits (227), Expect = 6e-23
Identities = 53/150 (35%), Positives = 75/150 (50%), Gaps = 6/150 (4%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTF-S 59
M L+ A D + +++ + K FCAGADL L +P + LR +
Sbjct: 31 MSAQLRAAVAAAEADPDVHALVV-TGAGKAFCAGADLTALGAAPGRPA--EDGLRRIYDG 87
Query: 60 FLE--ALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRL 117
FL + P+PTIA ++GAA+G GL +ALA D+RI G AL L + PG G T L
Sbjct: 88 FLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWML 147
Query: 118 PRLVGKSVAKDIIFTGRKVSGKDAMSLGLV 147
R VG VA+ + G + + A+ GL
Sbjct: 148 QRAVGPQVARAALLFGMRFDAEAAVRHGLA 177
|
Length = 249 |
| >gnl|CDD|235632 PRK05869, PRK05869, enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Score = 89.5 bits (222), Expect = 2e-22
Identities = 44/124 (35%), Positives = 67/124 (54%), Gaps = 1/124 (0%)
Query: 29 KVFCAGADLKVLQ-MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALAC 87
++F AG D+ L+ +S E + + A+P PT+A I G ALG GL +ALA
Sbjct: 62 EIFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAAIPKPTVAAITGYALGAGLTLALAA 121
Query: 88 DLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLV 147
D R+ G+ G E + P G RL R G S AK+++F+GR ++A++LGL+
Sbjct: 122 DWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGPSRAKELVFSGRFFDAEEALALGLI 181
Query: 148 NYYV 151
+ V
Sbjct: 182 DEMV 185
|
Length = 222 |
| >gnl|CDD|235661 PRK05981, PRK05981, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 89.4 bits (222), Expect = 5e-22
Identities = 52/176 (29%), Positives = 83/176 (47%), Gaps = 11/176 (6%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVN---TLRST 57
ML GL A + I + + ++ + + FC GA+L+ E + L +
Sbjct: 32 MLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSGGDAGAALETA 91
Query: 58 F----SFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAA--LLGLPETGLAIIPGA 111
+ L LP P + ++G A G G+ AL DL +C +A L GL +P
Sbjct: 92 YHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGL--VPDG 149
Query: 112 GGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 167
G T LPRLVGK+ A ++ G K+ + A+ GLVN V + +A+++A E+
Sbjct: 150 GSTWLLPRLVGKARAMELSLLGEKLPAETALQWGLVNRVVDDAELMAEAMKLAHEL 205
|
Length = 266 |
| >gnl|CDD|178269 PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase | Back alignment and domain information |
|---|
Score = 87.7 bits (217), Expect = 2e-21
Identities = 55/149 (36%), Positives = 75/149 (50%), Gaps = 13/149 (8%)
Query: 13 SEDSSANV-VMIRSSVPKVFCAGADLKVLQ------------MSPSEIHFYVNTLRSTFS 59
S D + NV V+I S FC+G DLK L S + + L+ +
Sbjct: 46 SLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRSGERLRRKIKFLQDAIT 105
Query: 60 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 119
+E P IA I GA +GGG+++ ACD+R C E A + E LAI G QRLP
Sbjct: 106 AIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPS 165
Query: 120 LVGKSVAKDIIFTGRKVSGKDAMSLGLVN 148
+VG A ++ TGR+ SG +A LGLV+
Sbjct: 166 IVGYGNAMELALTGRRFSGSEAKELGLVS 194
|
Length = 275 |
| >gnl|CDD|181009 PRK07511, PRK07511, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 4e-21
Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 5/166 (3%)
Query: 8 AFETISEDSSANVVMIRSSVPKVFCAGADLKVL----QMSPSEIHFYVNTLRSTFSFLEA 63
A T D S V++ + FCAG +L L PS ++ L + A
Sbjct: 38 ALNTAERDPSIRAVVL-TGAGGFFCAGGNLNRLLENRAKPPSVQAASIDGLHDWIRAIRA 96
Query: 64 LPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGK 123
P P IA ++GAA G G +ALACDL + A + + + P GG+ L R + +
Sbjct: 97 FPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPR 156
Query: 124 SVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQ 169
+A +++ G+ +S + +LG+VN GQA +AL +A ++
Sbjct: 157 QLATELLLEGKPISAERLHALGVVNRLAEPGQALAEALALADQLAA 202
|
Length = 260 |
| >gnl|CDD|236206 PRK08260, PRK08260, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 4e-21
Identities = 53/190 (27%), Positives = 80/190 (42%), Gaps = 29/190 (15%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADL----------KVLQMSPSEIHFY 50
M R L AF+ D + V++ + + FCAGADL ++
Sbjct: 32 MARELIEAFDAADADDAVRAVIVTGA-GRAFCAGADLSAGGNTFDLDAPRTPVEADEEDR 90
Query: 51 VN-------------TLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAAL 97
+ TLR + P IA ++G A+G G M LA D+R+ AA
Sbjct: 91 ADPSDDGVRDGGGRVTLR-----IFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAAR 145
Query: 98 LGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 157
G I+P A + LPRLVG A + +++GR ++A+ GLV P +
Sbjct: 146 FGFVFGRRGIVPEAASSWFLPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPPDELL 205
Query: 158 LKALEIAQEI 167
A +A+EI
Sbjct: 206 PAARALAREI 215
|
Length = 296 |
| >gnl|CDD|200143 TIGR01929, menB, naphthoate synthase (dihydroxynaphthoic acid synthetase) | Back alignment and domain information |
|---|
Score = 86.4 bits (214), Expect = 5e-21
Identities = 53/183 (28%), Positives = 83/183 (45%), Gaps = 12/183 (6%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMS-----PSEIHFYVNTLR 55
+++ L A ED VV++ + K FC+G D KV V ++
Sbjct: 35 IIQALDDA----REDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHRLNVLDVQ 90
Query: 56 STFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQ 115
P P IA+++G A+GGG + + CDL I E A G + G G+
Sbjct: 91 RQIRTC---PKPVIAMVNGYAIGGGHVLHMMCDLTIAAENARFGQTGPKVGSFDGGYGSS 147
Query: 116 RLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVF 175
+ R+VG+ A++I F R+ K A+ +GLVN VP + + + +EI QK
Sbjct: 148 YMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWCREILQKSPMAI 207
Query: 176 RIL 178
R+L
Sbjct: 208 RML 210
|
This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 259 |
| >gnl|CDD|235936 PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 5e-20
Identities = 48/177 (27%), Positives = 80/177 (45%), Gaps = 5/177 (2%)
Query: 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MSPSEIHFYVNTLRSTFSFL 61
L AF+TI++D VV++ P F G + L + + F L S L
Sbjct: 35 DQLHEAFDTIAQDPRYKVVILTG-YPNYFATGGTQEGLLSLQTGKGTFTEANLYS--LAL 91
Query: 62 EALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLV 121
PIP IA + G A+GGGL + L D+ + ++ PG G T LP +
Sbjct: 92 N-CPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKL 150
Query: 122 GKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRIL 178
G ++ ++++ T R G + G+ +P + KALE+A+ + +K + +L
Sbjct: 151 GLALGQEMLLTARYYRGAELKKRGVPFPVLPRAEVLEKALELARSLAEKPRHSLVLL 207
|
Length = 249 |
| >gnl|CDD|236115 PRK07854, PRK07854, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 1e-19
Identities = 48/152 (31%), Positives = 74/152 (48%), Gaps = 5/152 (3%)
Query: 13 SEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVI 72
+ D SA +++ VFCAGADL + + + L ++A P+P IA I
Sbjct: 39 AVDESARAIVLTGQGT-VFCAGADLSG-DVYADDFP---DALIEMLHAIDAAPVPVIAAI 93
Query: 73 DGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFT 132
+G A+G GL++A+ACDLR+ A P I +RL LVG A+ ++
Sbjct: 94 NGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAMLLG 153
Query: 133 GRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 164
K++ + A++ G+ N AQ A EIA
Sbjct: 154 AEKLTAEQALATGMANRIGTLADAQAWAAEIA 185
|
Length = 243 |
| >gnl|CDD|215480 PLN02888, PLN02888, enoyl-CoA hydratase | Back alignment and domain information |
|---|
Score = 82.1 bits (203), Expect = 2e-19
Identities = 49/171 (28%), Positives = 82/171 (47%), Gaps = 11/171 (6%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADL----KVLQMSPSEIHFYVNTLRS 56
M+ L AF+ + ED S V+++ S FC+G DL +V + ++
Sbjct: 38 MMVELAAAFKRLDEDDSVKVIILTGSGR-AFCSGVDLTAAEEVFKGDVKDVE------TD 90
Query: 57 TFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQR 116
+ +E P I I+G A+ G E+ALACD+ + A I P G +Q+
Sbjct: 91 PVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQK 150
Query: 117 LPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 167
L R++G + A+++ T ++ + A GLVN+ V + KA E+A+ I
Sbjct: 151 LSRIIGANRAREVSLTAMPLTAETAERWGLVNHVVEESELLKKAREVAEAI 201
|
Length = 265 |
| >gnl|CDD|236383 PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydratase/lyase; Validated | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 6e-19
Identities = 40/110 (36%), Positives = 57/110 (51%)
Query: 61 LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRL 120
L PTIA+++G GGG +ACDL I + A GL E I PG G ++ +
Sbjct: 100 LRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADT 159
Query: 121 VGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
VG A I TG +G+ A +GLVN VP Q + + E+A ++ +K
Sbjct: 160 VGHRDALYYIMTGETFTGRKAAEMGLVNESVPLAQLRARTRELAAKLLEK 209
|
Length = 275 |
| >gnl|CDD|236908 PRK11423, PRK11423, methylmalonyl-CoA decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 8e-19
Identities = 40/171 (23%), Positives = 81/171 (47%), Gaps = 2/171 (1%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSV-PKVFCAGADLKVLQMSPSEIHFYVNTLRSTFS 59
++ L A ++ VV++R+ KV+ AG D+ L + Y + LR
Sbjct: 32 LIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGRDPLSYDDPLRQILR 90
Query: 60 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 119
++ P P IA+++G+ GG E+ ++CDL I + + L + G
Sbjct: 91 MIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTN 150
Query: 120 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
G + K++ FT ++ + A+++G++N+ V + + L++A I++K
Sbjct: 151 DAGFHIVKEMFFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEK 201
|
Length = 261 |
| >gnl|CDD|235664 PRK05995, PRK05995, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 1e-18
Identities = 50/177 (28%), Positives = 75/177 (42%), Gaps = 12/177 (6%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADL----KVLQMSPSEIHFYVNTLRS 56
++ L AF + D S V++ + K FCAGADL K+ S E L
Sbjct: 32 VIAELTAAFRALDADDSVRAVVL-AGAGKAFCAGADLNWMKKMAGYSDDENRADARRLAD 90
Query: 57 TFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQR 116
+ P P IA + G A GG+ + ACD+ + + A+ L E L +IP
Sbjct: 91 MLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIP----ATI 146
Query: 117 LP---RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
P R +G+ A+ T + +A+ LGLV+ VPA K E+ +
Sbjct: 147 SPYVIRAMGERAARRYFLTAERFDAAEALRLGLVHEVVPAEALDAKVDELLAALVAN 203
|
Length = 262 |
| >gnl|CDD|168278 PRK05864, PRK05864, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 5e-18
Identities = 59/185 (31%), Positives = 87/185 (47%), Gaps = 36/185 (19%)
Query: 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTL-RSTFSF--- 60
LK A +S D+S VV++ + + F +GAD K + P +V L R T++
Sbjct: 42 LKEALAEVSYDNSVRVVVL-TGAGRGFSSGADHKSAGVVP-----HVEGLTRPTYALRSM 95
Query: 61 ---------LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAAL---------LGLPE 102
L L P IA ++G A+GGGL +ALA D+R+ +A L E
Sbjct: 96 ELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASE 155
Query: 103 TGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALE 162
GL+ + LPR +G S A +I+ TGR V ++A +GLV+ VP Q
Sbjct: 156 LGLSYL--------LPRAIGSSRAFEIMLTGRDVDAEEAERIGLVSRQVPDEQLLDTCYA 207
Query: 163 IAQEI 167
IA +
Sbjct: 208 IAARM 212
|
Length = 276 |
| >gnl|CDD|236338 PRK08788, PRK08788, enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 2e-17
Identities = 46/181 (25%), Positives = 73/181 (40%), Gaps = 35/181 (19%)
Query: 1 MLRGLKHAFETISEDSSANVVMIR-----SSVPKVFCAGADLKV------------LQMS 43
+L + + I + + + + S VP VF G DL + L
Sbjct: 44 LLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGDRDALLA- 102
Query: 44 PSEIHFY-------VNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAA 96
Y V+ F +IA++ G ALGGG E AL+ I A
Sbjct: 103 ------YARACVDGVHAFHRGF----GAGAISIALVQGDALGGGFEAALSHHTIIAERGA 152
Query: 97 LLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 156
+G PE + PG G L R VG +A+++I +G+ + ++ +GLV+ V GQ
Sbjct: 153 KMGFPEILFNLFPGMGAYSFLARRVGPKLAEELILSGKLYTAEELHDMGLVDVLVEDGQG 212
Query: 157 Q 157
+
Sbjct: 213 E 213
|
Length = 287 |
| >gnl|CDD|181174 PRK07938, PRK07938, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 4e-17
Identities = 53/177 (29%), Positives = 81/177 (45%), Gaps = 10/177 (5%)
Query: 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEAL 64
L A D VV++R+ + F AG D+K LQ +P ++ R F+ A+
Sbjct: 33 LADAITAAGADPDTRVVVLRAE-GRGFNAGVDIKELQATPGFTAL-IDANRGCFAAFRAV 90
Query: 65 ---PIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGA-GGTQRLPRL 120
+P IA + G LGGG+ + D+ + + A GLPE + GA G L RL
Sbjct: 91 YECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPE----VDRGALGAATHLQRL 146
Query: 121 VGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRI 177
V + + + + FT ++ + G V VP Q ALE+A++I K V R
Sbjct: 147 VPQHLMRALFFTAATITAAELHHFGSVEEVVPRDQLDEAALEVARKIAAKDTRVIRA 203
|
Length = 249 |
| >gnl|CDD|181249 PRK08139, PRK08139, enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 6e-17
Identities = 56/189 (29%), Positives = 85/189 (44%), Gaps = 24/189 (12%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSF 60
ML L+ A + I+ D S VV++ ++ K FCAG DLK ++ + +F R+ F+
Sbjct: 39 MLAALQAALDAIAADPSVRVVVLAAA-GKAFCAGHDLKEMRAARGLAYF-----RALFAR 92
Query: 61 -------LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAI-----I 108
+ ALP P IA + G A G ++ +CDL + + A +P G+ I
Sbjct: 93 CSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVP--GVNIGLFCST 150
Query: 109 PGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEIN 168
P L R V + A +++ TG + A GLVN VPA +A I
Sbjct: 151 PMVA----LSRNVPRKQAMEMLLTGEFIDAATAREWGLVNRVVPADALDAAVARLAAVIA 206
Query: 169 QKVQSVFRI 177
K + RI
Sbjct: 207 AKSPAAVRI 215
|
Length = 266 |
| >gnl|CDD|235533 PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 6e-17
Identities = 48/169 (28%), Positives = 82/169 (48%), Gaps = 24/169 (14%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMS------PSEIHFY---- 50
M+R + A + +D + V+I + + FCAG D++ L + + F+
Sbjct: 31 MIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAADRFFREEY 90
Query: 51 -VNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIP 109
+N L + + P P IA++DG +GGG+ ++ RI E + +PETG+ P
Sbjct: 91 RLNALIARY------PKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFP 144
Query: 110 GAGGTQRLPRL---VGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 155
GGT L R +G +A TG ++S DA+ GL +++VP+
Sbjct: 145 DVGGTYFLSRAPGALGTYLA----LTGARISAADALYAGLADHFVPSAD 189
|
Length = 342 |
| >gnl|CDD|223524 COG0447, MenB, Dihydroxynaphthoic acid synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 7e-17
Identities = 52/183 (28%), Positives = 90/183 (49%), Gaps = 13/183 (7%)
Query: 5 LKHAFETISEDSSANVVMIRSSVP--KVFCAGADLKVLQMSPSEIHFYV-NTLRSTFSFL 61
+ AF +D + V+++ + K FC+G D KV S YV + + L
Sbjct: 51 MIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGG----YVDDDGIPRLNVL 106
Query: 62 E------ALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQ 115
+ +P P IA++ G A+GGG + + CDL I + A+ G + G G+
Sbjct: 107 DLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSS 166
Query: 116 RLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVF 175
L R+VG+ A++I F R+ ++A+ +GLVN VP + + ++ A+E+ K +
Sbjct: 167 YLARIVGQKKAREIWFLCRQYDAEEALDMGLVNTVVPHADLEKETVQWAREMLAKSPTAL 226
Query: 176 RIL 178
R+L
Sbjct: 227 RML 229
|
Length = 282 |
| >gnl|CDD|131333 TIGR02280, PaaB1, phenylacetate degradation probable enoyl-CoA hydratase paaB | Back alignment and domain information |
|---|
Score = 74.9 bits (184), Expect = 1e-16
Identities = 49/155 (31%), Positives = 76/155 (49%), Gaps = 14/155 (9%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEI--------HFYVN 52
M L+ A E + D + +++ + + FCAG DL +P FY
Sbjct: 27 MHLELREALERVERDDARALML--TGAGRGFCAGQDLSERNPTPGGAPDLGRTIETFYNP 84
Query: 53 TLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAG 112
+R L ALP+P + ++G A G G +ALACD+ + E+A + +IP +G
Sbjct: 85 LVRR----LRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSG 140
Query: 113 GTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLV 147
GT LPRLVG++ A + G K+ + A S GL+
Sbjct: 141 GTWSLPRLVGRARAMGLAMLGEKLDARTAASWGLI 175
|
This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). Length = 256 |
| >gnl|CDD|132254 TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hydrolase | Back alignment and domain information |
|---|
Score = 74.6 bits (183), Expect = 1e-16
Identities = 53/178 (29%), Positives = 85/178 (47%), Gaps = 24/178 (13%)
Query: 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLK----------VLQMSPSEIHFYVNTL 54
L HA + D V+++ + K FC G D + + E+H + +
Sbjct: 34 LIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLPMEELH---SAI 90
Query: 55 RSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGL--PETGLAIIPGAG 112
R +P P IA + G A+GGG + CDL I E A G P+ G ++ PG G
Sbjct: 91 RD-------VPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVG-SVDPGYG 142
Query: 113 GTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
T L R+VG+ A++I + R+ + ++A+++GLVN VP Q + + EI +K
Sbjct: 143 -TALLARVVGEKKAREIWYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQKWCDEIVEK 199
|
Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen. Length = 256 |
| >gnl|CDD|236220 PRK08290, PRK08290, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 1e-16
Identities = 53/197 (26%), Positives = 80/197 (40%), Gaps = 40/197 (20%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLK----VLQMSPS----------- 45
ML L AF D + V+++ + F AG DL P
Sbjct: 32 MLYELDAAFRRAEADDAVRVIVLAGAGKH-FSAGHDLGSGTPGRDRDPGPDQHPTLWWDG 90
Query: 46 ------------EIHFYV-NTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRIC 92
E Y+ R LP PTIA + GA + GGL +A CDL +
Sbjct: 91 ATKPGVEQRYAREWEVYLGMCRR-----WRDLPKPTIAQVQGACIAGGLMLAWVCDLIVA 145
Query: 93 GEAALLGLPETGLAIIPGAGGTQRL--PRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYY 150
+ A P + G G + P +G AK+++FTG +++ +A LG+VN
Sbjct: 146 SDDAFFSDPVVRM----GIPGVEYFAHPWELGPRKAKELLFTGDRLTADEAHRLGMVNRV 201
Query: 151 VPAGQAQLKALEIAQEI 167
VP + + + LE+A+ I
Sbjct: 202 VPRDELEAETLELARRI 218
|
Length = 288 |
| >gnl|CDD|180958 PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 3e-16
Identities = 54/190 (28%), Positives = 87/190 (45%), Gaps = 30/190 (15%)
Query: 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL----QMSPSEIHFYVNTL------ 54
+ AF +D + V+++ + K FC+G D KV + + +N L
Sbjct: 45 MIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVP-RLNVLDLQRLI 103
Query: 55 RSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAG-- 112
R+ P P IA++ G A+GGG + L CDL I + A+ G +TG P G
Sbjct: 104 RT-------CPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFG--QTG----PKVGSF 150
Query: 113 ----GTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEIN 168
G L R+VG+ A++I F R+ ++A+ +GLVN VP + + + +E+
Sbjct: 151 DGGYGASYLARIVGQKKAREIWFLCRQYDAQEALDMGLVNTVVPLADLEKETVRWCREML 210
Query: 169 QKVQSVFRIL 178
Q R L
Sbjct: 211 QNSPMALRCL 220
|
Length = 273 |
| >gnl|CDD|236163 PRK08140, PRK08140, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 4e-16
Identities = 53/163 (32%), Positives = 79/163 (48%), Gaps = 29/163 (17%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEI---------HFYV 51
M R L+ A + + ED A +++ + + FCAG DL ++P FY
Sbjct: 32 MHRELREALDQV-EDDGARALLL-TGAGRGFCAGQDLADRDVTPGGAMPDLGESIETFYN 89
Query: 52 NTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAAL-------LGLPETG 104
+R L ALP+P IA ++G A G G +ALACD+ + +A +GL
Sbjct: 90 PLVRR----LRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGL---- 141
Query: 105 LAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLV 147
+P +GGT LPRLVG + A + G K+S + A GL+
Sbjct: 142 ---VPDSGGTWFLPRLVGMARALGLALLGEKLSAEQAEQWGLI 181
|
Length = 262 |
| >gnl|CDD|181329 PRK08258, PRK08258, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 1e-15
Identities = 43/149 (28%), Positives = 72/149 (48%), Gaps = 18/149 (12%)
Query: 31 FCAGADLK-----VLQMSPSEIHFYVNTLRSTFSFLEAL---PIPTIAVIDGAALGGGLE 82
FC+G D+ + +M E+ + R T ++A+ P P IA +DG G G
Sbjct: 74 FCSGGDVHEIIGPLTKMDMPELLAFT---RMTGDLVKAMRACPQPIIAAVDGVCAGAGAI 130
Query: 83 MALACDLRICGEAALLG--LPETGLAIIPGA--GGTQRLPRLVGKSVAKDIIFTGRKVSG 138
+A+A DLR+ +A GLA GA G LPR++G+ A ++++TGR +S
Sbjct: 131 LAMASDLRLGTPSAKTAFLFTRVGLA---GADMGACALLPRIIGQGRASELLYTGRSMSA 187
Query: 139 KDAMSLGLVNYYVPAGQAQLKALEIAQEI 167
++ G N V + +A +A+ +
Sbjct: 188 EEGERWGFFNRLVEPEELLAEAQALARRL 216
|
Length = 277 |
| >gnl|CDD|180987 PRK07468, PRK07468, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 2e-15
Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 6/157 (3%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ----MSPSEIHFYVNTLRS 56
M+ L A ++ D++ VV++ + K FCAG DL ++ + L
Sbjct: 33 MIAELTTAARRLAADAAVRVVVL-TGAGKSFCAGGDLGWMRAQMTADRATRIEEARRLAM 91
Query: 57 TFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQR 116
L LP P I I G A GGG+ + CD+ I A GL ET L +IP
Sbjct: 92 MLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYV 151
Query: 117 LPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA 153
+ R +G++ A+ + + R ++A+ LGL++ VPA
Sbjct: 152 VAR-MGEANARRVFMSARLFDAEEAVRLGLLSRVVPA 187
|
Length = 262 |
| >gnl|CDD|215635 PLN03214, PLN03214, probable enoyl-CoA hydratase/isomerase; Provisional | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 3e-15
Identities = 46/160 (28%), Positives = 72/160 (45%), Gaps = 5/160 (3%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPK-VFCAGADLKVLQMSPSEIHFYVNTLRSTFS 59
M R L A + D + V+ S + + VF AG D+ L + Y + +
Sbjct: 39 MWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYAEFWLTQTT 98
Query: 60 FLEAL---PIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAI-IPGAGGTQ 115
FL L + T+ I GA GG ++L CD R+ +GL E L I +P
Sbjct: 99 FLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARL 158
Query: 116 RLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 155
+ R++ + VA+ ++ GR V +A LGL++ VPA
Sbjct: 159 FMGRVIDRKVAESLLLRGRLVRPAEAKQLGLIDEVVPAAA 198
|
Length = 278 |
| >gnl|CDD|177817 PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Score = 72.0 bits (176), Expect = 3e-15
Identities = 47/167 (28%), Positives = 83/167 (49%), Gaps = 12/167 (7%)
Query: 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-----QMSPSEIHFYVNTLRSTFS 59
L+ ++ ED + VM++ S + FCAG D+ L + SP I + ++L S
Sbjct: 69 LQKLYKNWEEDPNIGFVMMKGS-GRAFCAGGDIVSLYHLRKRGSPDAIREFFSSLYSFIY 127
Query: 60 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 119
L P +A+++G +GGG +++ R+ + + PET + P AG + L
Sbjct: 128 LLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSH 187
Query: 120 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYY-----VPAGQAQLKAL 161
L G+ + + + TG K+SG + ++ GL +Y +P + QLK L
Sbjct: 188 LPGR-LGEYLGLTGLKLSGAEMLACGLATHYIRSEEIPVMEEQLKKL 233
|
Length = 401 |
| >gnl|CDD|168168 PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 3e-15
Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 8/167 (4%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVN-----TLR 55
M+R L A + + D+S +++R + F AGADL +Q S +++ + N L
Sbjct: 34 MIRELILALDQVQSDASLRFLLLRGR-GRHFSAGADLAWMQQS-ADLDYNTNLDDARELA 91
Query: 56 STFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQ 115
L L IPT+AV+ GAA GG L + CD+ I + A L E + + P A +
Sbjct: 92 ELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAP-AVISP 150
Query: 116 RLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALE 162
+ + +G+ A+ T + G+ A LGL+ PA + + +
Sbjct: 151 FVVKAIGERAARRYALTAERFDGRRARELGLLAESYPAAELEAQVEA 197
|
Length = 265 |
| >gnl|CDD|236213 PRK08272, PRK08272, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 4e-14
Identities = 48/199 (24%), Positives = 71/199 (35%), Gaps = 42/199 (21%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIH------FYVNTL 54
L+ A E D +V+++ S K FCAG DL S +
Sbjct: 38 TPLELRAAVERADLDPGVHVILV-SGAGKGFCAGYDLSAYAEGSSSGGGGGAYPGKRQAV 96
Query: 55 RS--------------------TFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGE 94
F L PT+A + G + GG ++AL CD I +
Sbjct: 97 NHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAAD 156
Query: 95 AALLGLPETGLAIIPGAG------GTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVN 148
A +G P T + +P G G QR AK ++FTG ++G A GL
Sbjct: 157 DAKIGYPPTRVWGVPATGMWAYRLGPQR---------AKRLLFTGDCITGAQAAEWGLAV 207
Query: 149 YYVPAGQAQLKALEIAQEI 167
VP + + + + I
Sbjct: 208 EAVPPEELDERTERLVERI 226
|
Length = 302 |
| >gnl|CDD|178509 PLN02921, PLN02921, naphthoate synthase | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 6e-14
Identities = 50/157 (31%), Positives = 77/157 (49%), Gaps = 16/157 (10%)
Query: 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ---MSPSEIHFYVNTLRSTFSFL 61
L+ AF +DSS V+++ K FC+G D V + +N L +
Sbjct: 99 LQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQIQ-I 157
Query: 62 EALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAG------GTQ 115
LP P IA++ G A+GGG + + CDL I + A+ G +TG P G G+
Sbjct: 158 RRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFG--QTG----PKVGSFDAGYGSS 211
Query: 116 RLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVP 152
+ RLVG+ A+++ F R + +A+ +GLVN VP
Sbjct: 212 IMARLVGQKKAREMWFLARFYTASEALKMGLVNTVVP 248
|
Length = 327 |
| >gnl|CDD|181274 PRK08184, PRK08184, benzoyl-CoA-dihydrodiol lyase; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 6e-13
Identities = 53/165 (32%), Positives = 82/165 (49%), Gaps = 26/165 (15%)
Query: 20 VVMIRSSVPKVFCAGADLKVLQMS--PSEIHF--YVNTLR------STFSFLEALPIPTI 69
V++ S+ +VFC+GA++ +L S +++F + N R S S L+ I
Sbjct: 73 TVVVTSAKDRVFCSGANIFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLK-----FI 127
Query: 70 AVIDGAALGGGLEMALACD--LRICGEAALLGLPETG-LAIIPGAGGTQRLPRLVGK-SV 125
A ++G GGG E+ALACD + + ++ + LPE L ++PG GG L R+ K V
Sbjct: 128 AAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVLPGTGG---LTRVTDKRKV 184
Query: 126 AKDI--IF--TGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQE 166
+D+ IF V GK A+ LV+ V + K E A E
Sbjct: 185 RRDLADIFCTIEEGVRGKRAVDWRLVDEVVKPSKFDAKVAERAAE 229
|
Length = 550 |
| >gnl|CDD|180910 PRK07260, PRK07260, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 1e-12
Identities = 44/149 (29%), Positives = 64/149 (42%), Gaps = 14/149 (9%)
Query: 8 AFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ--------MSPSEIHFYVNTLRSTFS 59
A ED S ++I + KVF G DL ++ S +I VN + S
Sbjct: 37 ALRLAEEDPSVRFLLINA-NGKVFSVGGDLVEMKRAVDEDDVQSLVKIAELVNEI----S 91
Query: 60 F-LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLP 118
F ++ LP P I +DGA G MA+A D I G+ + P AGG L
Sbjct: 92 FAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLT 151
Query: 119 RLVGKSVAKDIIFTGRKVSGKDAMSLGLV 147
R +G + A + TG ++ + A+ G V
Sbjct: 152 RAIGLNRATHLAMTGEALTAEKALEYGFV 180
|
Length = 255 |
| >gnl|CDD|180625 PRK06563, PRK06563, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 1e-12
Identities = 31/101 (30%), Positives = 50/101 (49%)
Query: 67 PTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVA 126
P + + G L G+E+ LA D+ + + E I+P G T R P+ G A
Sbjct: 94 PLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNA 153
Query: 127 KDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 167
+ TG + ++A+ LGLV VP G+ +A+E+A+ I
Sbjct: 154 MRYLLTGDEFDAQEALRLGLVQEVVPPGEQLERAIELAERI 194
|
Length = 255 |
| >gnl|CDD|178443 PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Score = 64.2 bits (156), Expect = 2e-12
Identities = 41/157 (26%), Positives = 80/157 (50%), Gaps = 11/157 (7%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIH------FYVNTL 54
M+ LK +E+ E+ V+++ S + FC+GAD+ L +E + F+ N
Sbjct: 70 MVARLKRLYESWEENPDIGFVLMKGS-GRAFCSGADVVSLYHLINEGNVEECKLFFENLY 128
Query: 55 RSTFSFLEALPI-PTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGG 113
+ F +L+ + P +A++DG +G G +++ R+ + + PE + P AG
Sbjct: 129 K--FVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGA 186
Query: 114 TQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYY 150
+ L RL G + + + TG+K++G + ++ GL +Y
Sbjct: 187 SYYLSRLPG-YLGEYLALTGQKLNGVEMIACGLATHY 222
|
Length = 407 |
| >gnl|CDD|178568 PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrolase | Back alignment and domain information |
|---|
Score = 63.6 bits (154), Expect = 2e-12
Identities = 44/176 (25%), Positives = 83/176 (47%), Gaps = 27/176 (15%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIH-----------F 49
M+ L F ED S +V+++ + FCAG D+ + + + +
Sbjct: 37 MISRLLQLFLAFEEDPSVKLVILKGH-GRAFCAGGDVAAVVRDIEQGNWRLGANFFSDEY 95
Query: 50 YVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIP 109
+N + +T+S + +++++G +GGG +++ RI E + +PET L + P
Sbjct: 96 MLNYVMATYSKAQ------VSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFP 149
Query: 110 GAGGT---QRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALE 162
G + RLP G+ V TG ++ G + ++ GL ++VP+ +L ALE
Sbjct: 150 DVGASYFLSRLPGFFGEYVG----LTGARLDGAEMLACGLATHFVPS--TRLTALE 199
|
Length = 381 |
| >gnl|CDD|213787 TIGR03222, benzo_boxC, benzoyl-CoA-dihydrodiol lyase | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 4e-12
Identities = 51/170 (30%), Positives = 79/170 (46%), Gaps = 24/170 (14%)
Query: 14 EDSSANVVMIRSSVPKVFCAGADLKVLQMSPS--EIHF--YVNTLR------STFSFLEA 63
E V++ S +VFC+GA++ +L +S +++F + N R S S L+
Sbjct: 63 EHPEVRTVVMTSGKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKF 122
Query: 64 LPIPTIAVIDGAALGGGLEMALACD--LRICGEAALLGLPETG-LAIIPGAGGTQRL--P 118
L A ++G GGG E+ALACD + + ++ + LPE L ++PG GG R+
Sbjct: 123 L-----AAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDK 177
Query: 119 RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ----AQLKALEIA 164
R V + A V GK A LV+ V Q +A E+A
Sbjct: 178 RRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAERAAELA 227
|
In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH. Length = 546 |
| >gnl|CDD|132233 TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecarbonyl-CoA hydratase | Back alignment and domain information |
|---|
Score = 61.5 bits (149), Expect = 8e-12
Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 4/148 (2%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSF 60
M+ L A EDS+ V++ + P F GA V + P + + +L
Sbjct: 28 MIAALSAALGEHLEDSALRAVLLDAEGPH-FSFGA--SVAEHMPDQCAAMLASLHKLVIA 84
Query: 61 LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRL 120
+ P+P + + G LGGGLE+A A +L A LG PE L + A LP
Sbjct: 85 MLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAPAASCL-LPER 143
Query: 121 VGKSVAKDIIFTGRKVSGKDAMSLGLVN 148
+G+ A+D++++GR + G + +GL N
Sbjct: 144 MGRVAAEDLLYSGRSIDGAEGARIGLAN 171
|
This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation. Length = 251 |
| >gnl|CDD|181386 PRK08321, PRK08321, naphthoate synthase; Validated | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 2e-11
Identities = 42/116 (36%), Positives = 62/116 (53%), Gaps = 1/116 (0%)
Query: 64 LPIPTIAVIDGAALGGGLEMALACDLRICG-EAALLGLPETGLAIIPGAGGTQRLPRLVG 122
+P IAV+ G A GGG + + CDL + E A + + G G+ L R VG
Sbjct: 134 MPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDGGYGSAYLARQVG 193
Query: 123 KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRIL 178
+ A++I F GR S ++A +G VN VP + + +ALE A+EIN K + R+L
Sbjct: 194 QKFAREIFFLGRTYSAEEAHDMGAVNAVVPHAELETEALEWAREINGKSPTAMRML 249
|
Length = 302 |
| >gnl|CDD|235991 PRK07327, PRK07327, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 5e-11
Identities = 52/185 (28%), Positives = 77/185 (41%), Gaps = 16/185 (8%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSF 60
M R L + + D VV+IR K F AG DL +++ + R
Sbjct: 40 MHRELADIWRDVDRDPDVRVVLIRGE-GKAFSAGGDLALVEEMADDFEVRARVWR----- 93
Query: 61 LEA---------LPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGA 111
EA P ++ I G A+G GL AL D+ I + A + T L + G
Sbjct: 94 -EARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGD 152
Query: 112 GGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKV 171
P L G + AK + VSG++A +GLV+ V + KALE+A+ +
Sbjct: 153 HAAIVWPLLCGMAKAKYYLLLCEPVSGEEAERIGLVSLAVDDDELLPKALEVAERLAAGS 212
Query: 172 QSVFR 176
Q+ R
Sbjct: 213 QTAIR 217
|
Length = 268 |
| >gnl|CDD|178462 PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 2e-09
Identities = 39/164 (23%), Positives = 71/164 (43%), Gaps = 25/164 (15%)
Query: 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEAL 64
L E +D S +++I+ + F AG DLK+ FY + S S LE +
Sbjct: 43 LAEFLEQWEKDDSVELIIIKG-AGRAFSAGGDLKM---------FY-DGRESDDSCLEVV 91
Query: 65 PI-------------PTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGA 111
+A++ G +GGG + + R+ E + PE +
Sbjct: 92 YRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDC 151
Query: 112 GGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 155
G + L RL G + + + TG +++GK+ ++ GL ++VP+ +
Sbjct: 152 GFSYILSRLPG-HLGEYLALTGARLNGKEMVACGLATHFVPSEK 194
|
Length = 379 |
| >gnl|CDD|132244 TIGR03200, dearomat_oah, 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 2e-09
Identities = 45/162 (27%), Positives = 68/162 (41%), Gaps = 14/162 (8%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLK----VLQMSPSEIHFYVNTLRS 56
M++ + AF S D V+ + K FC G + K +P E Y+
Sbjct: 56 MVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFND 115
Query: 57 TFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGL--PETGLAIIPGAGGT 114
S + P I ++G +GGG E+ +A D I + A G P+ G A I GA T
Sbjct: 116 MVSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGA--T 173
Query: 115 QRLPRLVGKSVAKDIIFTG---RKVSGKDAMSLGLVNYYVPA 153
LP ++G + + +G S A LG++ VPA
Sbjct: 174 DFLPLMIG---CEQAMVSGTLCEPWSAHKAKRLGIIMDVVPA 212
|
Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 360 |
| >gnl|CDD|236109 PRK07827, PRK07827, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 5e-09
Identities = 37/123 (30%), Positives = 50/123 (40%), Gaps = 9/123 (7%)
Query: 31 FCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEAL------PIPTIAVIDGAALGGGLEMA 84
FCAGADL + Y + L P P IA IDG GG +
Sbjct: 63 FCAGADLS--EAGGGGGDPYDAAVARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLV 120
Query: 85 LACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSL 144
ACD+ + G + L E + + P LPRL ++ A+ TG K +A +
Sbjct: 121 GACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLSPRAAAR-YYLTGEKFGAAEAARI 179
Query: 145 GLV 147
GLV
Sbjct: 180 GLV 182
|
Length = 260 |
| >gnl|CDD|215151 PLN02267, PLN02267, enoyl-CoA hydratase/isomerase family protein | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 2e-08
Identities = 40/156 (25%), Positives = 72/156 (46%), Gaps = 21/156 (13%)
Query: 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQM---SPSEIHFYVNTLRSTFSFL 61
++ A + ++ V+I ++ K F G DL Q +PS +H V LR + L
Sbjct: 31 IRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMVAKLRPLVADL 90
Query: 62 EALPIPTIAVIDGAALGGGLEMALACDLRI---------CGEAAL-LGLPETGLAIIPGA 111
+LP+PTIA + G A G +AL+ D + E + L LP+ +A++
Sbjct: 91 ISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAK 150
Query: 112 GGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLV 147
G+ R D++ K++ ++A+ +G+V
Sbjct: 151 IGSPAARR--------DVLLRAAKLTAEEAVEMGIV 178
|
Length = 239 |
| >gnl|CDD|168351 PRK06023, PRK06023, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 1e-07
Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 60 FLEALPI---PTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQR 116
FL AL P ++ +DG A+G G + L CDL +L P LA++P AG +
Sbjct: 89 FLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLL 148
Query: 117 LPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFR 176
PRL+G A ++ G S + A GL+ V + + L+ A+E+ K +
Sbjct: 149 APRLMGHQRAFALLALGEGFSAEAAQEAGLIWKIVDEEAVEAETLKAAEELAAKPPQALQ 208
Query: 177 I 177
I
Sbjct: 209 I 209
|
Length = 251 |
| >gnl|CDD|168377 PRK06072, PRK06072, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 3e-07
Identities = 37/165 (22%), Positives = 67/165 (40%), Gaps = 15/165 (9%)
Query: 8 AFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTF-SFLEALPI 66
+ I+ D VV++ + FC GADL + +P F ++ LR TF + +
Sbjct: 35 KLKQINADPKIRVVIVTGE-GRAFCVGADLS--EFAPD---FAID-LRETFYPIIREIRF 87
Query: 67 PT---IAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGK 123
I+ I+G G + +AL+ D + L + G L +L G+
Sbjct: 88 SDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQ 147
Query: 124 SVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEIN 168
+I+ G + + ++A GL+ + A E+A I+
Sbjct: 148 R-FYEILVLGGEFTAEEAERWGLLKI---SEDPLSDAEEMANRIS 188
|
Length = 248 |
| >gnl|CDD|183548 PRK12478, PRK12478, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 4e-07
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 65 PIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKS 124
P IA + G +GG + AL D+ I + A++G P + + GA T + +
Sbjct: 112 SKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTP---YSRMWGAYLTGMWLYRLSLA 168
Query: 125 VAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQ 169
K TGR ++G A L+N VP + + + E+A E+ +
Sbjct: 169 KVKWHSLTGRPLTGVQAAEAELINEAVPFERLEARVAEVATELAR 213
|
Length = 298 |
| >gnl|CDD|235938 PRK07112, PRK07112, polyketide biosynthesis enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 5e-07
Identities = 40/148 (27%), Positives = 60/148 (40%), Gaps = 5/148 (3%)
Query: 16 SSANVVMIRSSVPKVFCAGADLKVL---QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVI 72
+A +V++ +P+VFC GAD + + L + L P TIA +
Sbjct: 45 HAATIVVLEG-LPEVFCFGADFSAIAEKPDAGRADLIDAEPLYDLWHRLATGPYVTIAHV 103
Query: 73 DGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFT 132
G GG+ A D+ I E A L E +IP A L R +G A +
Sbjct: 104 RGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIP-ACVLPFLIRRIGTQKAHYMTLM 162
Query: 133 GRKVSGKDAMSLGLVNYYVPAGQAQLKA 160
+ V+ + A S GLV+ Y L+
Sbjct: 163 TQPVTAQQAFSWGLVDAYGANSDTLLRK 190
|
Length = 255 |
| >gnl|CDD|235744 PRK06213, PRK06213, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 3e-06
Identities = 40/174 (22%), Positives = 69/174 (39%), Gaps = 18/174 (10%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSF 60
M+ L A + +D + V++ + P +F G DLKV+ + L + +
Sbjct: 30 MIDALNAALDQAEDDRA---VVVITGQPGIFSGGFDLKVMTSGAQAA---IALLTAGSTL 83
Query: 61 LEAL---PIPTIAVIDGAALGGGLEMALACDLRICGEAAL-LGLPETGLAI-IPGAG--- 112
L P P I G A+ G + L+ D RI +GL E + + +P A
Sbjct: 84 ARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIEL 143
Query: 113 GTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQE 166
RL S + + ++A++ G ++ VP Q +A A+E
Sbjct: 144 ARDRLTP----SAFQRAVINAEMFDPEEAVAAGFLDEVVPPEQLLARAQAAARE 193
|
Length = 229 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 179 | |||
| PLN02600 | 251 | enoyl-CoA hydratase | 100.0 | |
| PRK06143 | 256 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK09076 | 258 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05869 | 222 | enoyl-CoA hydratase; Validated | 100.0 | |
| PRK05980 | 260 | enoyl-CoA hydratase; Provisional | 100.0 | |
| TIGR03210 | 256 | badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb | 100.0 | |
| PRK07657 | 260 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07327 | 268 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06144 | 262 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06023 | 251 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08150 | 255 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK09120 | 275 | p-hydroxycinnamoyl CoA hydratase/lyase; Validated | 100.0 | |
| PRK05809 | 260 | 3-hydroxybutyryl-CoA dehydratase; Validated | 100.0 | |
| TIGR01929 | 259 | menB naphthoate synthase (dihydroxynaphthoic acid | 100.0 | |
| PRK06190 | 258 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06127 | 269 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05862 | 257 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07658 | 257 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK09245 | 266 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK03580 | 261 | carnitinyl-CoA dehydratase; Provisional | 100.0 | |
| PRK06142 | 272 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07511 | 260 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06563 | 255 | enoyl-CoA hydratase; Provisional | 100.0 | |
| KOG1680 | 290 | consensus Enoyl-CoA hydratase [Lipid transport and | 100.0 | |
| PRK09674 | 255 | enoyl-CoA hydratase-isomerase; Provisional | 100.0 | |
| PRK08138 | 261 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08139 | 266 | enoyl-CoA hydratase; Validated | 100.0 | |
| TIGR02280 | 256 | PaaB1 phenylacetate degradation probable enoyl-CoA | 100.0 | |
| PRK07260 | 255 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PLN02664 | 275 | enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA | 100.0 | |
| PRK05995 | 262 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05674 | 265 | gamma-carboxygeranoyl-CoA hydratase; Validated | 100.0 | |
| PRK05870 | 249 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK11423 | 261 | methylmalonyl-CoA decarboxylase; Provisional | 100.0 | |
| PRK08140 | 262 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05864 | 276 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08258 | 277 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PF00378 | 245 | ECH: Enoyl-CoA hydratase/isomerase family; InterPr | 100.0 | |
| PRK06688 | 259 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07396 | 273 | dihydroxynaphthoic acid synthetase; Validated | 100.0 | |
| PRK07110 | 249 | polyketide biosynthesis enoyl-CoA hydratase; Valid | 100.0 | |
| PRK06494 | 259 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07468 | 262 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08260 | 296 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PLN02888 | 265 | enoyl-CoA hydratase | 100.0 | |
| PRK07659 | 260 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07799 | 263 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05981 | 266 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08252 | 254 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07938 | 249 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08259 | 254 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PLN03214 | 278 | probable enoyl-CoA hydratase/isomerase; Provisiona | 100.0 | |
| PLN02921 | 327 | naphthoate synthase | 100.0 | |
| PRK06495 | 257 | enoyl-CoA hydratase; Provisional | 100.0 | |
| COG1024 | 257 | CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi | 100.0 | |
| PRK06210 | 272 | enoyl-CoA hydratase; Provisional | 100.0 | |
| TIGR03189 | 251 | dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy | 100.0 | |
| PRK07509 | 262 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06213 | 229 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08788 | 287 | enoyl-CoA hydratase; Validated | 100.0 | |
| PRK08321 | 302 | naphthoate synthase; Validated | 100.0 | |
| PRK07854 | 243 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05617 | 342 | 3-hydroxyisobutyryl-CoA hydrolase; Provisional | 100.0 | |
| PRK08290 | 288 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06072 | 248 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07827 | 260 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08272 | 302 | enoyl-CoA hydratase; Provisional | 100.0 | |
| TIGR03200 | 360 | dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy | 100.0 | |
| PLN02157 | 401 | 3-hydroxyisobutyryl-CoA hydrolase-like protein | 100.0 | |
| PLN02874 | 379 | 3-hydroxyisobutyryl-CoA hydrolase-like protein | 100.0 | |
| PLN02267 | 239 | enoyl-CoA hydratase/isomerase family protein | 100.0 | |
| PRK07112 | 255 | polyketide biosynthesis enoyl-CoA hydratase; Valid | 100.0 | |
| PRK12478 | 298 | enoyl-CoA hydratase; Provisional | 100.0 | |
| KOG1679 | 291 | consensus Enoyl-CoA hydratase [Lipid transport and | 100.0 | |
| PLN02988 | 381 | 3-hydroxyisobutyryl-CoA hydrolase | 100.0 | |
| PRK08184 | 550 | benzoyl-CoA-dihydrodiol lyase; Provisional | 100.0 | |
| TIGR03222 | 546 | benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p | 100.0 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 100.0 | |
| PLN02851 | 407 | 3-hydroxyisobutyryl-CoA hydrolase-like protein | 100.0 | |
| KOG1681 | 292 | consensus Enoyl-CoA isomerase [Lipid transport and | 100.0 | |
| cd06558 | 195 | crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy | 100.0 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 100.0 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 100.0 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 100.0 | |
| TIGR03222 | 546 | benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p | 100.0 | |
| KOG0016 | 266 | consensus Enoyl-CoA hydratase/isomerase [Lipid tra | 100.0 | |
| PRK08184 | 550 | benzoyl-CoA-dihydrodiol lyase; Provisional | 100.0 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 100.0 | |
| COG0447 | 282 | MenB Dihydroxynaphthoic acid synthase [Coenzyme me | 100.0 | |
| KOG1682 | 287 | consensus Enoyl-CoA isomerase [Lipid transport and | 100.0 | |
| KOG1684 | 401 | consensus Enoyl-CoA hydratase [Lipid transport and | 99.97 | |
| cd07014 | 177 | S49_SppA Signal peptide peptidase A. Signal peptid | 99.91 | |
| cd07020 | 187 | Clp_protease_NfeD_1 Nodulation formation efficienc | 99.89 | |
| cd07019 | 211 | S49_SppA_1 Signal peptide peptidase A (SppA), a se | 99.81 | |
| TIGR00705 | 584 | SppA_67K signal peptide peptidase SppA, 67K type. | 99.76 | |
| cd00394 | 161 | Clp_protease_like Caseinolytic protease (ClpP) is | 99.75 | |
| cd07023 | 208 | S49_Sppa_N_C Signal peptide peptidase A (SppA), a | 99.73 | |
| cd07022 | 214 | S49_Sppa_36K_type Signal peptide peptidase A (SppA | 99.73 | |
| cd07016 | 160 | S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP- | 99.72 | |
| TIGR00706 | 207 | SppA_dom signal peptide peptidase SppA, 36K type. | 99.7 | |
| cd07018 | 222 | S49_SppA_67K_type Signal peptide peptidase A (SppA | 99.66 | |
| cd07021 | 178 | Clp_protease_NfeD_like Nodulation formation effici | 99.53 | |
| PRK10949 | 618 | protease 4; Provisional | 99.39 | |
| cd07015 | 172 | Clp_protease_NfeD Nodulation formation efficiency | 99.32 | |
| cd07013 | 162 | S14_ClpP Caseinolytic protease (ClpP) is an ATP-de | 99.29 | |
| COG0616 | 317 | SppA Periplasmic serine proteases (ClpP class) [Po | 99.24 | |
| PRK11778 | 330 | putative inner membrane peptidase; Provisional | 99.1 | |
| cd07017 | 171 | S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP- | 99.08 | |
| PRK12553 | 207 | ATP-dependent Clp protease proteolytic subunit; Re | 99.04 | |
| PRK00277 | 200 | clpP ATP-dependent Clp protease proteolytic subuni | 98.99 | |
| PRK14512 | 197 | ATP-dependent Clp protease proteolytic subunit; Pr | 98.96 | |
| PF00574 | 182 | CLP_protease: Clp protease; InterPro: IPR001907 In | 98.96 | |
| TIGR00705 | 584 | SppA_67K signal peptide peptidase SppA, 67K type. | 98.93 | |
| CHL00028 | 200 | clpP ATP-dependent Clp protease proteolytic subuni | 98.87 | |
| TIGR00493 | 191 | clpP ATP-dependent Clp protease, proteolytic subun | 98.87 | |
| CHL00198 | 322 | accA acetyl-CoA carboxylase carboxyltransferase al | 98.86 | |
| PF01343 | 154 | Peptidase_S49: Peptidase family S49 peptidase clas | 98.84 | |
| PRK12319 | 256 | acetyl-CoA carboxylase subunit alpha; Provisional | 98.84 | |
| PRK10949 | 618 | protease 4; Provisional | 98.81 | |
| PRK12551 | 196 | ATP-dependent Clp protease proteolytic subunit; Re | 98.75 | |
| PRK05724 | 319 | acetyl-CoA carboxylase carboxyltransferase subunit | 98.74 | |
| PRK14514 | 221 | ATP-dependent Clp protease proteolytic subunit; Pr | 98.73 | |
| TIGR00513 | 316 | accA acetyl-CoA carboxylase, carboxyl transferase, | 98.73 | |
| KOG1683 | 380 | consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA | 98.7 | |
| PLN03230 | 431 | acetyl-coenzyme A carboxylase carboxyl transferase | 98.7 | |
| PLN03229 | 762 | acetyl-coenzyme A carboxylase carboxyl transferase | 98.67 | |
| PRK14513 | 201 | ATP-dependent Clp protease proteolytic subunit; Pr | 98.67 | |
| PF01972 | 285 | SDH_sah: Serine dehydrogenase proteinase; InterPro | 98.49 | |
| COG0740 | 200 | ClpP Protease subunit of ATP-dependent Clp proteas | 98.49 | |
| TIGR03134 | 238 | malonate_gamma malonate decarboxylase, gamma subun | 98.37 | |
| COG1030 | 436 | NfeD Membrane-bound serine protease (ClpP class) [ | 98.34 | |
| TIGR03133 | 274 | malonate_beta malonate decarboxylase, beta subunit | 98.33 | |
| PRK12552 | 222 | ATP-dependent Clp protease-like protein; Reviewed | 98.3 | |
| PRK05654 | 292 | acetyl-CoA carboxylase subunit beta; Validated | 98.3 | |
| TIGR00515 | 285 | accD acetyl-CoA carboxylase, carboxyl transferase, | 98.2 | |
| PRK07189 | 301 | malonate decarboxylase subunit beta; Reviewed | 98.16 | |
| CHL00174 | 296 | accD acetyl-CoA carboxylase beta subunit; Reviewed | 98.08 | |
| COG0825 | 317 | AccA Acetyl-CoA carboxylase alpha subunit [Lipid m | 98.04 | |
| TIGR01117 | 512 | mmdA methylmalonyl-CoA decarboxylase alpha subunit | 97.97 | |
| COG0777 | 294 | AccD Acetyl-CoA carboxylase beta subunit [Lipid me | 97.96 | |
| PF01039 | 493 | Carboxyl_trans: Carboxyl transferase domain; Inter | 97.78 | |
| PLN02820 | 569 | 3-methylcrotonyl-CoA carboxylase, beta chain | 97.48 | |
| TIGR01117 | 512 | mmdA methylmalonyl-CoA decarboxylase alpha subunit | 97.39 | |
| PLN02820 | 569 | 3-methylcrotonyl-CoA carboxylase, beta chain | 97.3 | |
| PF01039 | 493 | Carboxyl_trans: Carboxyl transferase domain; Inter | 97.18 | |
| COG4799 | 526 | Acetyl-CoA carboxylase, carboxyltransferase compon | 96.86 | |
| KOG0840 | 275 | consensus ATP-dependent Clp protease, proteolytic | 96.23 | |
| COG4799 | 526 | Acetyl-CoA carboxylase, carboxyltransferase compon | 95.6 | |
| KOG0540 | 536 | consensus 3-Methylcrotonyl-CoA carboxylase, non-bi | 94.08 | |
| COG0074 | 293 | SucD Succinyl-CoA synthetase, alpha subunit [Energ | 91.37 | |
| PF06833 | 234 | MdcE: Malonate decarboxylase gamma subunit (MdcE); | 87.95 | |
| PTZ00187 | 317 | succinyl-CoA synthetase alpha subunit; Provisional | 87.86 | |
| PF13607 | 138 | Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin | 87.17 | |
| TIGR00237 | 432 | xseA exodeoxyribonuclease VII, large subunit. This | 86.11 | |
| PF00549 | 153 | Ligase_CoA: CoA-ligase; InterPro: IPR005811 This e | 85.14 | |
| PLN02522 | 608 | ATP citrate (pro-S)-lyase | 84.77 | |
| PF02601 | 319 | Exonuc_VII_L: Exonuclease VII, large subunit; Inte | 84.06 | |
| COG1570 | 440 | XseA Exonuclease VII, large subunit [DNA replicati | 83.34 |
| >PLN02600 enoyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-46 Score=291.41 Aligned_cols=179 Identities=71% Similarity=1.100 Sum_probs=165.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+++|.+++++++.|+++|+|||||.++++||+|.|++++ .........+...++.++.++.++|||+||+|||+|+|+
T Consensus 23 ~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg 102 (251)
T PLN02600 23 MLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTFSSLEALSIPTIAVVEGAALGG 102 (251)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEecCeecch
Confidence 6789999999999999999999999866899999999987 322333444556667788899999999999999999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
|++|+++||+||++++++|++||.++|++|++++++++++++|..++++++++|++++++||+++||||+++|++++.++
T Consensus 103 G~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~ 182 (251)
T PLN02600 103 GLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRIGAREAASMGLVNYCVPAGEAYEK 182 (251)
T ss_pred hHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCcEeeChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030339 160 ALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 160 a~~~a~~~~~~~~~a~~~~K 179 (179)
+.++++++++.||.+++.+|
T Consensus 183 a~~~a~~la~~~p~a~~~~K 202 (251)
T PLN02600 183 ALELAQEINQKGPLAIKMAK 202 (251)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999887
|
|
| >PRK06143 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-46 Score=291.67 Aligned_cols=178 Identities=30% Similarity=0.527 Sum_probs=163.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+.+|.++++.++.|+++|+|||||.++++||+|.|++++ ..+......+...++.++..+.++||||||+|||+|+||
T Consensus 35 ~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg 114 (256)
T PRK06143 35 VILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISRLRDLCDAVRHFPVPVIARIPGWCLGG 114 (256)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeeh
Confidence 5789999999999999999999999954799999999987 323333444556677888999999999999999999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
|++|+++||+||++++++|++||+++|+ |++++++++++++|..++++++++|++++|+||+++||||+|+|++++.++
T Consensus 115 G~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~ 193 (256)
T PRK06143 115 GLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGWARTRWLLLTGETIDAAQALAWGLVDRVVPLAELDAA 193 (256)
T ss_pred hHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHCCCcCeecCHHHHHHH
Confidence 9999999999999999999999999998 778888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030339 160 ALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 160 a~~~a~~~~~~~~~a~~~~K 179 (179)
+.+++++++++||.+++.+|
T Consensus 194 a~~~a~~la~~~~~a~~~~K 213 (256)
T PRK06143 194 VERLAASLAGCGPQALRQQK 213 (256)
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999887
|
|
| >PRK09076 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-46 Score=291.87 Aligned_cols=179 Identities=36% Similarity=0.557 Sum_probs=164.1
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+.+|.+++++++.|+++|+|||+|.++++||+|.|++++ ..+......+...+..++.++.++||||||+|||+|+||
T Consensus 30 ~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg 109 (258)
T PRK09076 30 SLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMARRFGEAFEALSAFRGVSIAAINGYAMGG 109 (258)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEecH
Confidence 6789999999999999999999999955799999999987 222222333445566788899999999999999999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
|++|+++||+||++++++|++||.++|++|++++++++++++|..++++++++|++++++||+++||||+|+|++++.++
T Consensus 110 G~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~ 189 (258)
T PRK09076 110 GLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMILCGERVDAATALRIGLVEEVVEKGEAREA 189 (258)
T ss_pred HHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCCceecCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030339 160 ALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 160 a~~~a~~~~~~~~~a~~~~K 179 (179)
+.+++++++++||.+++.+|
T Consensus 190 a~~~a~~l~~~~~~a~~~~K 209 (258)
T PRK09076 190 ALALAQKVANQSPSAVAACK 209 (258)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999877
|
|
| >PRK05869 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-46 Score=285.38 Aligned_cols=178 Identities=28% Similarity=0.444 Sum_probs=164.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+.+|.+++++++.|+++++|||||. +++||+|.|++++ ...........+.+++++.++.++||||||+|||+|+||
T Consensus 35 ~~~~l~~~l~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~Gg 113 (222)
T PRK05869 35 VYREIVAAANELGRRDDVAAVILYGG-HEIFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAAIPKPTVAAITGYALGA 113 (222)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEECC-CCCcCcCcCHHHHhccChhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeecH
Confidence 57899999999999999999999998 7899999999987 222222233345567788999999999999999999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
|++|+++||+||++++++|++||.++|++|+.++++++++++|..++++++++|++++++||+++||||++++++++.++
T Consensus 114 G~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~ 193 (222)
T PRK05869 114 GLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGPSRAKELVFSGRFFDAEEALALGLIDEMVAPDDVYDA 193 (222)
T ss_pred HHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCCCEeeCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030339 160 ALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 160 a~~~a~~~~~~~~~a~~~~K 179 (179)
+.++++++++.||.+++.+|
T Consensus 194 a~~~a~~ia~~~~~a~~~~K 213 (222)
T PRK05869 194 AAAWARRFLDGPPHALAAAK 213 (222)
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999887
|
|
| >PRK05980 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-46 Score=290.72 Aligned_cols=179 Identities=33% Similarity=0.517 Sum_probs=163.5
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-cc---C-chhHHHHHHHHHHHHHHHhcCCCcEEEEEccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QM---S-PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGA 75 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~---~-~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~ 75 (179)
|+++|.+++++++.|+++|+|||||.++++||+|.|++++ .. . ......+.+...+++.++.++|||+||+|||+
T Consensus 31 ~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~ 110 (260)
T PRK05980 31 LIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALRDFVRRGQAMTARLEAFPKPVIAAVNGL 110 (260)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCE
Confidence 6789999999999999999999999844799999999987 21 1 11234455556678889999999999999999
Q ss_pred ccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCCh
Q 030339 76 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 155 (179)
Q Consensus 76 a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~ 155 (179)
|+|||++|+++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++++||+++||||+|+++++
T Consensus 111 a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~ 190 (260)
T PRK05980 111 AFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRALELLLTGDAFSAERALEIGLVNAVVPHEE 190 (260)
T ss_pred EEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCHHHHHHHHHcCCccCHHHHHHcCCCCcccCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCHHHHHhhC
Q 030339 156 AQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 156 ~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+.+++.++++++++.||.+++.+|
T Consensus 191 l~~~a~~~a~~la~~~p~a~~~~K 214 (260)
T PRK05980 191 LLPAARALARRIIRHSPVAVAAIL 214 (260)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999998876
|
|
| >TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-46 Score=290.41 Aligned_cols=179 Identities=27% Similarity=0.400 Sum_probs=161.5
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchh
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G 80 (179)
|+.+|.++++.++.|+++|+|||||.+++.||+|.|++++....+........+..++..+.++|||+||+|||+|+|||
T Consensus 30 ~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG 109 (256)
T TIGR03210 30 TCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLPMEELHSAIRDVPKPVIARVQGYAIGGG 109 (256)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhccccchhHHHHHHHHHHHHHHhCCCCEEEEECCEEehhh
Confidence 67899999999999999999999999558999999999872211111112234566888999999999999999999999
Q ss_pred HHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHHH
Q 030339 81 LEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKA 160 (179)
Q Consensus 81 ~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~a 160 (179)
++|+++||+||++++++|++||.++|++|++++++++++++|..++++++++|++++|+||+++||||+++|++++.+++
T Consensus 110 ~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a 189 (256)
T TIGR03210 110 NVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKAREIWYLCRRYTAQEALAMGLVNAVVPHDQLDAEV 189 (256)
T ss_pred HHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCceeeeCHHHHHHHH
Confidence 99999999999999999999999999998888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCHHHHHhhC
Q 030339 161 LEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 161 ~~~a~~~~~~~~~a~~~~K 179 (179)
.+++++++++||.+++.+|
T Consensus 190 ~~~a~~ia~~~~~a~~~~K 208 (256)
T TIGR03210 190 QKWCDEIVEKSPTAIAIAK 208 (256)
T ss_pred HHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999887
|
Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen. |
| >PRK07657 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-46 Score=290.14 Aligned_cols=179 Identities=48% Similarity=0.784 Sum_probs=165.3
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+.+|.+++++++.|+++++|||||.+++.||+|.|+.++ .........+...+..++..+.++||||||+|||+|+|+
T Consensus 32 ~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 111 (260)
T PRK07657 32 LLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTTMEMVEQLPQPVIAAINGIALGG 111 (260)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCChhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeech
Confidence 6789999999999999999999999944699999999987 323333444555667788899999999999999999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
|++|+++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++++||+++||||++++++++.++
T Consensus 112 G~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~ 191 (260)
T PRK07657 112 GLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEIGLVEFVVPAHLLEEK 191 (260)
T ss_pred HHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCCeecCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030339 160 ALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 160 a~~~a~~~~~~~~~a~~~~K 179 (179)
+.+++++++.+||.+++.+|
T Consensus 192 a~~~a~~l~~~~~~a~~~~K 211 (260)
T PRK07657 192 AIEIAEKIASNGPIAVRQAK 211 (260)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999887
|
|
| >PRK07327 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=290.72 Aligned_cols=178 Identities=29% Similarity=0.365 Sum_probs=163.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccc-c--CchhHHHHHHHHHHHHHHHhcCCCcEEEEEccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-M--SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 77 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~ 77 (179)
|+.+|.+++++++.|+++|+|||||. +++||+|.|+.++. . ...........+..++..+.++||||||+|||+|+
T Consensus 40 ~~~~l~~~l~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~ 118 (268)
T PRK07327 40 MHRELADIWRDVDRDPDVRVVLIRGE-GKAFSAGGDLALVEEMADDFEVRARVWREARDLVYNVINCDKPIVSAIHGPAV 118 (268)
T ss_pred HHHHHHHHHHHhhhCCCceEEEEECC-CCCcccccCHHHHhhccCcHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCeee
Confidence 57899999999999999999999998 68999999998872 1 11223334455567888999999999999999999
Q ss_pred chhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHH
Q 030339 78 GGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 157 (179)
Q Consensus 78 g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~ 157 (179)
|||++|+++||+||++++++|++||.++|++|+.++++++++++|..++++++++|++++|+||+++||||++++++++.
T Consensus 119 GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~ 198 (268)
T PRK07327 119 GAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMAKAKYYLLLCEPVSGEEAERIGLVSLAVDDDELL 198 (268)
T ss_pred ehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCHHHHHhhC
Q 030339 158 LKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 158 ~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+++.+++++++++||.+++.+|
T Consensus 199 ~~a~~~a~~la~~~~~a~~~~K 220 (268)
T PRK07327 199 PKALEVAERLAAGSQTAIRWTK 220 (268)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999887
|
|
| >PRK06144 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=288.92 Aligned_cols=179 Identities=32% Similarity=0.498 Sum_probs=163.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-cc-CchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QM-SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 78 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g 78 (179)
|+++|.+++++++.|+++++|||||.++++||+|.|++++ .. ..+....+...+.+++..+.++|||+||+|||+|+|
T Consensus 36 ~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~G 115 (262)
T PRK06144 36 MYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERRIDRVLGALEQLRVPTIAAIAGACVG 115 (262)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeee
Confidence 5789999999999999999999999855799999999987 22 122233344556778889999999999999999999
Q ss_pred hhHHHHhhcCEEEEcCCceeeccccc-ccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHH
Q 030339 79 GGLEMALACDLRICGEAALLGLPETG-LAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 157 (179)
Q Consensus 79 ~G~~l~~~~D~~va~~~a~~~~p~~~-~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~ 157 (179)
||++|+++||+||++++++|++||.+ +|++|++++++++++++|..++++++++|++++++||+++||||+|++++++.
T Consensus 116 gG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~ 195 (262)
T PRK06144 116 GGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAARVKDMLFTARLLEAEEALAAGLVNEVVEDAALD 195 (262)
T ss_pred hHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCcCeecCHHHHH
Confidence 99999999999999999999999996 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCHHHHHhhC
Q 030339 158 LKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 158 ~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+++.+++++++++||.+++.+|
T Consensus 196 ~~a~~~a~~i~~~~~~a~~~~K 217 (262)
T PRK06144 196 ARADALAELLAAHAPLTLRATK 217 (262)
T ss_pred HHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999999887
|
|
| >PRK06023 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-45 Score=287.81 Aligned_cols=178 Identities=23% Similarity=0.352 Sum_probs=162.2
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchh
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G 80 (179)
|+++|.++++.++.|+++|+|||+|. +++||+|.|++++.........+...+.+++..+.++||||||+|||+|+|||
T Consensus 34 ~~~~L~~~l~~~~~d~~vr~vVl~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG 112 (251)
T PRK06023 34 MYATMAKALKAADADDAIRAHVFLGT-EGCFSAGNDMQDFLAAAMGGTSFGSEILDFLIALAEAEKPIVSGVDGLAIGIG 112 (251)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEECC-CCCeecCcCHHHHhhccccchhhHHHHHHHHHHHHhCCCCEEEEeCCceecHH
Confidence 68899999999999999999999998 78999999998872111111123345567888999999999999999999999
Q ss_pred HHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHHH
Q 030339 81 LEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKA 160 (179)
Q Consensus 81 ~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~a 160 (179)
++++++||+||++++++|++||.++|++|++++++++++++|..++++++++|++++++||+++||||+|+|++++.+++
T Consensus 113 ~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a 192 (251)
T PRK06023 113 TTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQRAFALLALGEGFSAEAAQEAGLIWKIVDEEAVEAET 192 (251)
T ss_pred HHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhHHHHHHHHHhCCCCCHHHHHHcCCcceeeCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCHHHHHhhC
Q 030339 161 LEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 161 ~~~a~~~~~~~~~a~~~~K 179 (179)
.++++++++.||.+++.+|
T Consensus 193 ~~~a~~l~~~~~~a~~~~K 211 (251)
T PRK06023 193 LKAAEELAAKPPQALQIAR 211 (251)
T ss_pred HHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999877
|
|
| >PRK08150 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-45 Score=286.89 Aligned_cols=176 Identities=34% Similarity=0.575 Sum_probs=160.8
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccc-cCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+.+|.+++++++ +++|+|||||. |+.||+|.|++++. ............++.++.++.++|||+||+|||+|+||
T Consensus 30 ~~~~l~~al~~~~--~~vr~vvltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 106 (255)
T PRK08150 30 LIAALRAAFARLP--EGVRAVVLHGE-GDHFCAGLDLSELRERDAGEGMHHSRRWHRVFDKIQYGRVPVIAALHGAVVGG 106 (255)
T ss_pred HHHHHHHHHHHhh--cCCeEEEEECC-CCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEcH
Confidence 6789999999987 79999999998 78999999999872 22222233345567788899999999999999999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
|++|+++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++++||+++||||++++++++.++
T Consensus 107 G~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~ 186 (255)
T PRK08150 107 GLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTDMMLTGRVYDAQEGERLGLAQYLVPAGEALDK 186 (255)
T ss_pred HHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCccEeeCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030339 160 ALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 160 a~~~a~~~~~~~~~a~~~~K 179 (179)
+.+++++++++||.+++.+|
T Consensus 187 a~~~a~~la~~~~~a~~~~K 206 (255)
T PRK08150 187 AMELARRIAQNAPLTNFAVL 206 (255)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999998876
|
|
| >PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-45 Score=290.08 Aligned_cols=178 Identities=29% Similarity=0.433 Sum_probs=162.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-cc-C-c-h-hHHHHHHHHHHHHHHHhcCCCcEEEEEccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QM-S-P-S-EIHFYVNTLRSTFSFLEALPIPTIAVIDGA 75 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~-~-~-~-~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~ 75 (179)
|+.+|.+++++++.|+++|+|||||. ++.||+|.|++++ .. . . . ........+..++..+.++||||||+|||+
T Consensus 36 m~~el~~al~~~~~d~~vr~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 114 (275)
T PRK09120 36 LNREMIDVLDALEFDDDAGVLVLTGA-GDAWSAGMDLKEYFRETDAQPEILQERIRREAYGWWRRLRWYQKPTIAMVNGW 114 (275)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEEcC-CCceecCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCE
Confidence 67899999999999999999999998 7899999999886 21 1 1 1 122233345567888999999999999999
Q ss_pred ccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCCh
Q 030339 76 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 155 (179)
Q Consensus 76 a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~ 155 (179)
|+|+|++|+++||+||++++++|++||.++|++|++++++++++++|..++++++++|++++|+||+++|||++|+|+++
T Consensus 115 a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~llltg~~~~A~eA~~~Glv~~vv~~~~ 194 (275)
T PRK09120 115 CFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRDALYYIMTGETFTGRKAAEMGLVNESVPLAQ 194 (275)
T ss_pred EechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCHHHHHHHHhcCCccCHHHHHHcCCcceecCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCHHHHHhhC
Q 030339 156 AQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 156 ~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+.+++.+++++++++||.+++.+|
T Consensus 195 l~~~a~~~a~~la~~~p~a~~~~K 218 (275)
T PRK09120 195 LRARTRELAAKLLEKNPVVLRAAK 218 (275)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999999887
|
|
| >PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-45 Score=287.03 Aligned_cols=179 Identities=36% Similarity=0.595 Sum_probs=163.8
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+.+|.+++++++.|+++++|||||.+++.||+|.|++++ .........+.....+++..+.++||||||+|||+|+||
T Consensus 32 ~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 111 (260)
T PRK05809 32 TLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVFRKLENLDKPVIAAINGFALGG 111 (260)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccChHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeecH
Confidence 5789999999999999999999999844899999999987 322222333444556788899999999999999999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
|++|+++||+||++++++|++||+++|++|+.+++++|++++|..++++++++|++++++||+++||||+|++++++.++
T Consensus 112 G~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~ 191 (260)
T PRK05809 112 GCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKAKELIYTGDMINAEEALRIGLVNKVVEPEKLMEE 191 (260)
T ss_pred HHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCCcccChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030339 160 ALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 160 a~~~a~~~~~~~~~a~~~~K 179 (179)
+.++++++++.||.+++.+|
T Consensus 192 a~~~a~~la~~~~~a~~~~K 211 (260)
T PRK05809 192 AKALANKIAANAPIAVKLCK 211 (260)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999876
|
|
| >TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-45 Score=287.18 Aligned_cols=179 Identities=28% Similarity=0.462 Sum_probs=160.1
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccccc--CchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQM--SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 78 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g 78 (179)
|+++|.++++.++.|+++|+|||||.++++||+|.|++++.. ...........+..++..+.++|||+||+|||+|+|
T Consensus 31 ~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 110 (259)
T TIGR01929 31 TVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHRLNVLDVQRQIRTCPKPVIAMVNGYAIG 110 (259)
T ss_pred HHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhHHHHHHHHHHHHHHhCCCCEEEEEcCEEeh
Confidence 678999999999999999999999994489999999987621 111111111123467788999999999999999999
Q ss_pred hhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHH
Q 030339 79 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 158 (179)
Q Consensus 79 ~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~ 158 (179)
||++|+++||+||++++++|++||+++|++|++++++++++++|+.++++++++|++++++||+++||||+|+|++++.+
T Consensus 111 gG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~ 190 (259)
T TIGR01929 111 GGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAEQALDMGLVNTVVPLADLEK 190 (259)
T ss_pred HHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHHHHHHHhCCccCHHHHHHcCCcccccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030339 159 KALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 159 ~a~~~a~~~~~~~~~a~~~~K 179 (179)
++.++++++++.||.+++.+|
T Consensus 191 ~a~~~a~~la~~~~~a~~~~K 211 (259)
T TIGR01929 191 ETVRWCREILQKSPMAIRMLK 211 (259)
T ss_pred HHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999887
|
This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches. |
| >PRK06190 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-45 Score=286.36 Aligned_cols=177 Identities=33% Similarity=0.475 Sum_probs=161.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchh
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G 80 (179)
|+++|.+++++++.|+++|+|||||. ++.||+|.|+.++......... ...++.++..+.++|||+||+|||+|+|+|
T Consensus 32 ~~~~l~~~l~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~-~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG 109 (258)
T PRK06190 32 LRRALFAALAEADADDDVDVVVLTGA-DPAFCAGLDLKELGGDGSAYGA-QDALPNPSPAWPAMRKPVIGAINGAAVTGG 109 (258)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEECC-CCCccCCcCHHHHhcccchhhH-HHHHHHHHHHHHhCCCCEEEEECCEeecHH
Confidence 67899999999999999999999998 7999999999987221111111 234567888999999999999999999999
Q ss_pred HHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHHH
Q 030339 81 LEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKA 160 (179)
Q Consensus 81 ~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~a 160 (179)
++|+++||+||++++++|++||.++|++|++++++++++++|+.++++++++|++++|+||+++||||+++|++++.+++
T Consensus 110 ~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a 189 (258)
T PRK06190 110 LELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRARRMSLTGDFLDAADALRAGLVTEVVPHDELLPRA 189 (258)
T ss_pred HHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCeEecCHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCHHHHHhhC
Q 030339 161 LEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 161 ~~~a~~~~~~~~~a~~~~K 179 (179)
.+++++++++||.+++.+|
T Consensus 190 ~~~a~~la~~~~~a~~~~K 208 (258)
T PRK06190 190 RRLAASIAGNNPAAVRALK 208 (258)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999887
|
|
| >PRK06127 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-45 Score=287.90 Aligned_cols=179 Identities=30% Similarity=0.507 Sum_probs=164.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-cc--CchhHHHHHHHHHHHHHHHhcCCCcEEEEEccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QM--SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 77 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~ 77 (179)
|+++|.+++++++.|+++++|||+|.+++.||+|.|++++ .. ..+....+......++..+.++||||||+|||+|+
T Consensus 39 ~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~ 118 (269)
T PRK06127 39 MWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVAAYEQAVEAAQAALADYAKPTIACIRGYCI 118 (269)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEe
Confidence 6789999999999999999999999855899999999987 21 12223344455667888899999999999999999
Q ss_pred chhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHH
Q 030339 78 GGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 157 (179)
Q Consensus 78 g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~ 157 (179)
|+|++|+++||+||++++++|++||.++|++|++++++++++++|.+++++++++|++++++||+++||||+|+|++++.
T Consensus 119 GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~ 198 (269)
T PRK06127 119 GGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAAKDLFYTARRFDAAEALRIGLVHRVTAADDLE 198 (269)
T ss_pred cHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCCCEeeCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCHHHHHhhC
Q 030339 158 LKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 158 ~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+++.+++++++++||.+++.+|
T Consensus 199 ~~a~~~a~~l~~~~~~a~~~~K 220 (269)
T PRK06127 199 TALADYAATIAGNAPLTLRAAK 220 (269)
T ss_pred HHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999998876
|
|
| >PRK05862 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-45 Score=285.67 Aligned_cols=177 Identities=33% Similarity=0.528 Sum_probs=161.2
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchh
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G 80 (179)
|+.+|.+++++++.|+++|+|||+|. ++.||+|.|++++.... ....+...+..++.++.++||||||+|||+|+|||
T Consensus 32 ~~~~l~~~l~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~-~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG 109 (257)
T PRK05862 32 LMDELGAALAAFDADEGIGAIVITGS-EKAFAAGADIKEMADLS-FMDVYKGDYITNWEKVARIRKPVIAAVAGYALGGG 109 (257)
T ss_pred HHHHHHHHHHHHhhCCCeeEEEEECC-CCceECCcChHhHhccc-hhHHHHHHHHHHHHHHHhCCCCEEEEEccEEeHHH
Confidence 67899999999999999999999998 78999999999872111 11122233455778899999999999999999999
Q ss_pred HHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHHH
Q 030339 81 LEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKA 160 (179)
Q Consensus 81 ~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~a 160 (179)
++|+++||+||++++++|++||.++|++|+++++++|++++|..++++++++|++++++||+++||||++++++++.+++
T Consensus 110 ~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a 189 (257)
T PRK05862 110 CELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAMDLCLTGRMMDAAEAERAGLVSRVVPADKLLDEA 189 (257)
T ss_pred HHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCCEeeCHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCHHHHHhhC
Q 030339 161 LEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 161 ~~~a~~~~~~~~~a~~~~K 179 (179)
.++++++++.+|.+++.+|
T Consensus 190 ~~~a~~l~~~~~~a~~~~K 208 (257)
T PRK05862 190 LAAATTIASFSLPAVMMAK 208 (257)
T ss_pred HHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999887
|
|
| >PRK07658 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-45 Score=285.78 Aligned_cols=178 Identities=38% Similarity=0.621 Sum_probs=163.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCc-hhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSP-SEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 78 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g 78 (179)
|+++|.+++++++.|+++++|||+|. |+.||+|.|++++ .... .....+....+.++.++.++|||+||+|||+|+|
T Consensus 29 ~~~~l~~~l~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAav~G~a~G 107 (257)
T PRK07658 29 VLHELSELLDQVEKDDNVRVVVIHGE-GRFFSAGADIKEFTSVTEAEQATELAQLGQVTFERVEKFSKPVIAAIHGAALG 107 (257)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCceEeCcCHHHHhccCchhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCeeee
Confidence 67899999999999999999999998 7899999999987 2221 2333344556778889999999999999999999
Q ss_pred hhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHH
Q 030339 79 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 158 (179)
Q Consensus 79 ~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~ 158 (179)
+|++|+++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++++||+++||||++++++++.+
T Consensus 108 gG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~ 187 (257)
T PRK07658 108 GGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEMMLTSEPITGAEALKWGLVNGVFPEETLLD 187 (257)
T ss_pred HHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCcCeecChhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030339 159 KALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 159 ~a~~~a~~~~~~~~~a~~~~K 179 (179)
++.++++++++.||.+++.+|
T Consensus 188 ~a~~~a~~l~~~~~~a~~~~K 208 (257)
T PRK07658 188 DAKKLAKKIAGKSPATTRAVL 208 (257)
T ss_pred HHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999998876
|
|
| >PRK09245 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-45 Score=287.25 Aligned_cols=178 Identities=30% Similarity=0.499 Sum_probs=161.8
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccC------chh-HHHHHHHHHHHHHHHhcCCCcEEEEE
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMS------PSE-IHFYVNTLRSTFSFLEALPIPTIAVI 72 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~------~~~-~~~~~~~~~~~~~~~~~~~kp~ia~v 72 (179)
|+++|.+++++++.|+++|+|||+|. |++||+|.|++++ ... ... ...+...+..++.++.++|||+||+|
T Consensus 32 ~~~~l~~~l~~~~~d~~vr~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav 110 (266)
T PRK09245 32 AVDALVAACAAINADRSVRAVILTGA-GTAFSSGGNVKDMRARVGAFGGSPADIRQGYRHGIQRIPLALYNLEVPVIAAV 110 (266)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEECC-CCCcccCcCHHHHhhccccccccchhHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 57899999999999999999999998 7999999999887 211 111 12233345667888999999999999
Q ss_pred cccccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccC
Q 030339 73 DGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVP 152 (179)
Q Consensus 73 ~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~ 152 (179)
||+|+|+|++|+++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++++||+++||||+|++
T Consensus 111 ~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~ 190 (266)
T PRK09245 111 NGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIGMARAAEMAFTGDAIDAATALEWGLVSRVVP 190 (266)
T ss_pred CCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHhhHHHHHHHHHcCCCcCHHHHHHcCCcceecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhccCHHHHHhhC
Q 030339 153 AGQAQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 153 ~~~~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
++++.+++.+++++++++||.+++.+|
T Consensus 191 ~~~l~~~a~~~a~~l~~~~~~a~~~~K 217 (266)
T PRK09245 191 ADQLLPAARALAERIAANPPHALRLTK 217 (266)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999999999887
|
|
| >PRK03580 carnitinyl-CoA dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-45 Score=286.13 Aligned_cols=178 Identities=30% Similarity=0.497 Sum_probs=160.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccc-cCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+.+|.+++++++.|+++|+|||||.++++||+|.|++++. ..... ..+.......+.++.++|||+||+|||+|+||
T Consensus 30 ~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 108 (261)
T PRK03580 30 TSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPD-ADFGPGGFAGLTEIFDLDKPVIAAVNGYAFGG 108 (261)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcch-hhhhhhhhHHHHHHHhCCCCEEEEECCeeehH
Confidence 67899999999999999999999999558999999999872 21111 11212223456788999999999999999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
|++|+++||+||++++++|++||+++|++|++++++++++++|+.++++++++|++++++||+++||||+++|++++.++
T Consensus 109 G~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~ 188 (261)
T PRK03580 109 GFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIANEMVMTGRRMDAEEALRWGIVNRVVPQAELMDR 188 (261)
T ss_pred HHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCcEecCHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030339 160 ALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 160 a~~~a~~~~~~~~~a~~~~K 179 (179)
+.++++++++.||.+++.+|
T Consensus 189 a~~~a~~la~~~~~a~~~~K 208 (261)
T PRK03580 189 ARELAQQLVNSAPLAIAALK 208 (261)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999998876
|
|
| >PRK06142 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-45 Score=288.12 Aligned_cols=178 Identities=26% Similarity=0.426 Sum_probs=162.2
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccccc-C-----------chhHHHHHHHHHHHHHHHhcCCCcE
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQM-S-----------PSEIHFYVNTLRSTFSFLEALPIPT 68 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~-~-----------~~~~~~~~~~~~~~~~~~~~~~kp~ 68 (179)
|+.+|.+++++++.|+++|+|||||. |+.||+|.|++++.. . ..........+.+++..+.++||||
T Consensus 34 ~~~~l~~~l~~~~~d~~vr~vVl~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpv 112 (272)
T PRK06142 34 FWSELPEIFRWLDADPEVRAVVLSGS-GKHFSYGIDLPAMAGVFGQLGKDGLARPRTDLRREILRLQAAINAVADCRKPV 112 (272)
T ss_pred HHHHHHHHHHHHhhCCCeEEEEEECC-CCceecccCHHHHhhhcccccccccccchHHHHHHHHHHHHHHHHHHhCCCCE
Confidence 67899999999999999999999998 789999999988721 0 1122233445667888899999999
Q ss_pred EEEEcccccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccc
Q 030339 69 IAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVN 148 (179)
Q Consensus 69 ia~v~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~ 148 (179)
||+|||+|+|||++|+++||+||++++++|++||.++|++|+.|+++++++++|..++++++++|++++++||+++||||
T Consensus 113 IAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~a~eA~~~GLv~ 192 (272)
T PRK06142 113 IAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQRLPRIIGDGHLRELALTGRDIDAAEAEKIGLVN 192 (272)
T ss_pred EEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCC-ChHHHHHHHHHHHHhccCHHHHHhhC
Q 030339 149 YYVPA-GQAQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 149 ~v~~~-~~~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+|+++ +++++++.++++++++.||.+++.+|
T Consensus 193 ~vv~~~~~l~~~a~~~a~~ia~~~~~a~~~~K 224 (272)
T PRK06142 193 RVYDDADALLAAAHATAREIAAKSPLAVRGTK 224 (272)
T ss_pred EecCCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99985 88999999999999999999999887
|
|
| >PRK07511 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-45 Score=285.17 Aligned_cols=178 Identities=28% Similarity=0.480 Sum_probs=164.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-cc---CchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 76 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a 76 (179)
|+++|.+++++++.|+++|+|||+|. ++.||+|.|++++ .. .......+...+++++..+.++|||+||+|||+|
T Consensus 31 ~~~~l~~~l~~~~~d~~vr~vVl~g~-g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAav~G~a 109 (260)
T PRK07511 31 MYAAGIEALNTAERDPSIRAVVLTGA-GGFFCAGGNLNRLLENRAKPPSVQAASIDGLHDWIRAIRAFPKPVIAAVEGAA 109 (260)
T ss_pred HHHHHHHHHHHhccCCCeEEEEEECC-CCCcccCcCHHHHhhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCee
Confidence 67899999999999999999999998 7999999999987 21 2233344556677889999999999999999999
Q ss_pred cchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChH
Q 030339 77 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 156 (179)
Q Consensus 77 ~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~ 156 (179)
+|+|++|+++||+||++++++|++||.++|++|++++++++++++|.+.+++++++|++++++||+++||||+|++++++
T Consensus 110 ~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~ 189 (260)
T PRK07511 110 AGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQLATELLLEGKPISAERLHALGVVNRLAEPGQA 189 (260)
T ss_pred ehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCccEeeCchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCHHHHHhhC
Q 030339 157 QLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 157 ~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
.+++.+++++++++||.++..+|
T Consensus 190 ~~~a~~~a~~l~~~~~~~~~~~K 212 (260)
T PRK07511 190 LAEALALADQLAAGSPNALARIK 212 (260)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999998876
|
|
| >PRK06563 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-45 Score=285.67 Aligned_cols=178 Identities=25% Similarity=0.331 Sum_probs=157.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccccc-CchhHHHHHHHHHH-HHHHHhcCCCcEEEEEcccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQM-SPSEIHFYVNTLRS-TFSFLEALPIPTIAVIDGAALG 78 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~kp~ia~v~G~a~g 78 (179)
|+++|.+++++++.|+++|+|||+|. |+.||+|.|++++.. .......+.....+ +...+.++||||||+|||+|+|
T Consensus 27 ~~~~l~~~l~~~~~d~~vrvvvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 105 (255)
T PRK06563 27 MLDDLALALGEYEADDELRVAVLFAH-GEHFTAGLDLADVAPKLAAGGFPFPEGGIDPWGTVGRRLSKPLVVAVQGYCLT 105 (255)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEECC-CCCCcCCcCHHHHhhccccchhhhhhhhhHHHHHHHhcCCCCEEEEEcCeeec
Confidence 67899999999999999999999998 789999999998721 11111112111222 2335789999999999999999
Q ss_pred hhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHH
Q 030339 79 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 158 (179)
Q Consensus 79 ~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~ 158 (179)
+|++|+++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++++||+++||||+|++++++.+
T Consensus 106 gG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~ 185 (255)
T PRK06563 106 LGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLLTGDEFDAQEALRLGLVQEVVPPGEQLE 185 (255)
T ss_pred HHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHHHHcCCCcCHHHHHHcCCCcEeeCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030339 159 KALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 159 ~a~~~a~~~~~~~~~a~~~~K 179 (179)
++.+++++++++||.+++.+|
T Consensus 186 ~a~~~a~~la~~~~~a~~~~K 206 (255)
T PRK06563 186 RAIELAERIARAAPLGVQATL 206 (255)
T ss_pred HHHHHHHHHHhcCHHHHHHHH
Confidence 999999999999999998876
|
|
| >KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-46 Score=282.46 Aligned_cols=176 Identities=41% Similarity=0.682 Sum_probs=157.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccccc-CchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQM-SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+.+|.+++..+++|++++++||||. ++.||+|.|+.++.. ...+.. ...+.+.+..+.+.+||+|+++||+|+||
T Consensus 65 ~m~eL~~A~~~~e~D~s~~viVltG~-gksFcsG~Dl~e~~~~~~~~~~--~~~~~~~~~~~~~~~KPvIaainG~AlgG 141 (290)
T KOG1680|consen 65 TMLELAEAFKDFESDDSVGVIVLTGS-GKSFCSGADLKEMKKDEFQDVS--DGIFLRVWDLVSRLKKPVIAAINGFALGG 141 (290)
T ss_pred HHHHHHHHHHHhhccCcccEEEEEcC-CCccccccCHHHHhhccccccc--cccccchhhhhhhcccceeEeeeceeecc
Confidence 57899999999999999999999999 799999999998721 111111 01122334444589999999999999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
|++|+++||+|||.++++|++|+.++|++|.+|++.+|++.+|.++|++++++|++++++||+++||||+|+|.++++++
T Consensus 142 G~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~~ltg~~~~AqeA~~~GlVn~Vvp~~~~l~e 221 (290)
T KOG1680|consen 142 GLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRALEMILTGRRLGAQEAKKIGLVNKVVPSGDALGE 221 (290)
T ss_pred chhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChHHHHHHHHhcCcccHHHHHhCCceeEeecchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030339 160 ALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 160 a~~~a~~~~~~~~~a~~~~K 179 (179)
|.+++++|+++||.++++.|
T Consensus 222 Av~l~~~Ia~~~~~~v~~~K 241 (290)
T KOG1680|consen 222 AVKLAEQIAKNSPLVVRADK 241 (290)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999998876
|
|
| >PRK09674 enoyl-CoA hydratase-isomerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-45 Score=284.68 Aligned_cols=177 Identities=37% Similarity=0.570 Sum_probs=161.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchh
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G 80 (179)
|+++|.+++++++.|+++|+|||||. |++||+|.|++++.... ....+.+....+++.+.++||||||+|||+|+|+|
T Consensus 30 ~~~~L~~~~~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~-~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG 107 (255)
T PRK09674 30 LLTQLVNELEAAATDTSIGVCVITGN-ARFFAAGADLNEMAEKD-LAATLNDPRPQLWQRLQAFNKPLIAAVNGYALGAG 107 (255)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEECC-CCceecccChHhHhccc-hhhhHHHHHHHHHHHHHhCCCCEEEEECCEeehHH
Confidence 67899999999999999999999998 79999999998872111 11122234456788899999999999999999999
Q ss_pred HHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHHH
Q 030339 81 LEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKA 160 (179)
Q Consensus 81 ~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~a 160 (179)
++|+++||+||++++++|++||.++|++|++++++++++++|+.++++++++|++++++||+++||||+|++++++.+++
T Consensus 108 ~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a 187 (255)
T PRK09674 108 CELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQMVLTGESITAQQAQQAGLVSEVFPPELTLERA 187 (255)
T ss_pred HHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCcEecChHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCHHHHHhhC
Q 030339 161 LEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 161 ~~~a~~~~~~~~~a~~~~K 179 (179)
.+++++++++||.+++.+|
T Consensus 188 ~~~a~~l~~~~~~a~~~~K 206 (255)
T PRK09674 188 LQLASKIARHSPLALRAAK 206 (255)
T ss_pred HHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999877
|
|
| >PRK08138 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-45 Score=284.80 Aligned_cols=177 Identities=36% Similarity=0.577 Sum_probs=162.1
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchh
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G 80 (179)
|+.+|.++++.+++|+++|+|||+|. +++||+|.|++++.... ....+...+.+++..+.++|||+||+|||+|+|+|
T Consensus 36 ~~~~l~~al~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~-~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG 113 (261)
T PRK08138 36 VRQQLAEHFTELSEDPDIRAIVLTGG-EKVFAAGADIKEFATAG-AIEMYLRHTERYWEAIAQCPKPVIAAVNGYALGGG 113 (261)
T ss_pred HHHHHHHHHHHHhhCCCeeEEEEECC-CCCeeCCcCHHHHhccc-hhHHHHHHHHHHHHHHHhCCCCEEEEEccEEEcHH
Confidence 67899999999999999999999998 78999999998872111 12223345567888999999999999999999999
Q ss_pred HHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHHH
Q 030339 81 LEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKA 160 (179)
Q Consensus 81 ~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~a 160 (179)
++|+++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++++||+++||||+|+|++++.+++
T Consensus 114 ~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a 193 (261)
T PRK08138 114 CELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRMALTGCMVPAPEALAIGLVSEVVEDEQTLPRA 193 (261)
T ss_pred HHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCHHHHHhhC
Q 030339 161 LEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 161 ~~~a~~~~~~~~~a~~~~K 179 (179)
.+++++++++||.+++.+|
T Consensus 194 ~~~a~~l~~~~~~a~~~~K 212 (261)
T PRK08138 194 LELAREIARMPPLALAQIK 212 (261)
T ss_pred HHHHHHHHhCCHHHHHHHH
Confidence 9999999999999998876
|
|
| >PRK08139 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-44 Score=285.03 Aligned_cols=177 Identities=28% Similarity=0.443 Sum_probs=160.8
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccc-c-CchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-M-SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 78 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g 78 (179)
|+++|.+++++++.|+++++|||||. |+.||+|.|++++. . ..+....+.+.+.+++.++.++|||+||+|||+|+|
T Consensus 39 ~~~~l~~~l~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 117 (266)
T PRK08139 39 MLAALQAALDAIAADPSVRVVVLAAA-GKAFCAGHDLKEMRAARGLAYFRALFARCSRVMQAIVALPQPVIARVHGIATA 117 (266)
T ss_pred HHHHHHHHHHHHhcCCCeeEEEEecC-CCcceeccCHHHHhcccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECceeeH
Confidence 67899999999999999999999999 78999999999872 2 122233444556678889999999999999999999
Q ss_pred hhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHH
Q 030339 79 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 158 (179)
Q Consensus 79 ~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~ 158 (179)
||++|+++||+||++++++|++||.++|++|+++ ++++++++|..++++++++|++++++||+++||||+|+|++++.+
T Consensus 118 gG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~-~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~ 196 (266)
T PRK08139 118 AGCQLVASCDLAVAADTARFAVPGVNIGLFCSTP-MVALSRNVPRKQAMEMLLTGEFIDAATAREWGLVNRVVPADALDA 196 (266)
T ss_pred HHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCcc-HHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCccEeeChhHHHH
Confidence 9999999999999999999999999999999765 568999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030339 159 KALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 159 ~a~~~a~~~~~~~~~a~~~~K 179 (179)
++.++++++++.||.+++.+|
T Consensus 197 ~a~~~a~~la~~~~~a~~~~K 217 (266)
T PRK08139 197 AVARLAAVIAAKSPAAVRIGK 217 (266)
T ss_pred HHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999876
|
|
| >TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=283.49 Aligned_cols=177 Identities=28% Similarity=0.462 Sum_probs=159.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccccc-C--chhH-HHHHHHHHHHHHHHhcCCCcEEEEEcccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQM-S--PSEI-HFYVNTLRSTFSFLEALPIPTIAVIDGAA 76 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~-~--~~~~-~~~~~~~~~~~~~~~~~~kp~ia~v~G~a 76 (179)
|+.+|.+++++++.|+ +++|||||. ++.||+|.|++++.. . .... ......+..+++++.++||||||+|||+|
T Consensus 27 ~~~~l~~~l~~~~~d~-v~~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 104 (256)
T TIGR02280 27 MHLELREALERVERDD-ARALMLTGA-GRGFCAGQDLSERNPTPGGAPDLGRTIETFYNPLVRRLRALPLPVVCAVNGVA 104 (256)
T ss_pred HHHHHHHHHHHHhcCC-cEEEEEECC-CCCcccCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence 6789999999999998 999999998 789999999998721 1 1111 12222335577889999999999999999
Q ss_pred cchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChH
Q 030339 77 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 156 (179)
Q Consensus 77 ~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~ 156 (179)
+|||++|+++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++++||+++||||+++|++++
T Consensus 105 ~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l 184 (256)
T TIGR02280 105 AGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLAMLGEKLDARTAASWGLIWQVVDDAAL 184 (256)
T ss_pred ehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCcceeeChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCHHHHHhhC
Q 030339 157 QLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 157 ~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
.+++.++++++++.||.+++.+|
T Consensus 185 ~~~a~~~a~~la~~~~~~~~~~K 207 (256)
T TIGR02280 185 MDEAQALAVHLAAQPTRGLALTK 207 (256)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999998887
|
This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). |
| >PRK07260 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-45 Score=283.75 Aligned_cols=178 Identities=22% Similarity=0.362 Sum_probs=162.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccccc--Cc---hhHHHHHHHHHHHHHHHhcCCCcEEEEEccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQM--SP---SEIHFYVNTLRSTFSFLEALPIPTIAVIDGA 75 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~ 75 (179)
|+.+|.++++.++.|+++++|||+|. +++||+|.|++++.. .. .....+.+.+++++.++.++||||||+|||+
T Consensus 30 ~~~~l~~~l~~~~~d~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~ 108 (255)
T PRK07260 30 MCQEILEALRLAEEDPSVRFLLINAN-GKVFSVGGDLVEMKRAVDEDDVQSLVKIAELVNEISFAIKQLPKPVIMCVDGA 108 (255)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEECC-CCCcccccCHHHHHhhccccchhhHHHHHHHHHHHHHHHHcCCCCEEEEecCe
Confidence 67899999999999999999999998 789999999998721 11 1222334456678889999999999999999
Q ss_pred ccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCCh
Q 030339 76 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 155 (179)
Q Consensus 76 a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~ 155 (179)
|+|+|++|+++||+||++++++|++||.++|++|+.++++++++.+|+.++++++++|++++|+||+++||||+++++++
T Consensus 109 a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~sa~eA~~~Glv~~vv~~~~ 188 (255)
T PRK07260 109 VAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNRATHLAMTGEALTAEKALEYGFVYRVAESEK 188 (255)
T ss_pred eehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHHHHHHHHHhCCccCHHHHHHcCCcceecCHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCHHHHHhhC
Q 030339 156 AQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 156 ~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+.+++.++++++++.+|.+++.+|
T Consensus 189 l~~~a~~~a~~la~~~~~a~~~~K 212 (255)
T PRK07260 189 LEKTCEQLLKKLRRGSSNSYAAIK 212 (255)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999887
|
|
| >PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=286.12 Aligned_cols=178 Identities=30% Similarity=0.527 Sum_probs=161.3
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCc-----------hhHHHHHHHHHHHHHHHhcCCCcE
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSP-----------SEIHFYVNTLRSTFSFLEALPIPT 68 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~-----------~~~~~~~~~~~~~~~~~~~~~kp~ 68 (179)
|+++|.++++.++.|+++|+|||||. |+.||+|.|++++ .... +....+...+++++..+.++||||
T Consensus 36 ~~~~l~~al~~~~~d~~vrvvVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv 114 (275)
T PLN02664 36 FFTEFPKALSSLDQNPNVSVIILSGA-GDHFCSGIDLKTLNSISEQSSSGDRGRSGERLRRKIKFLQDAITAIEQCRKPV 114 (275)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEECC-CCceeeCcChHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHhCCCCE
Confidence 67899999999999999999999998 7899999999987 2110 112223344567788899999999
Q ss_pred EEEEcccccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccc
Q 030339 69 IAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVN 148 (179)
Q Consensus 69 ia~v~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~ 148 (179)
||+|||+|+|||++|+++||++|++++++|++||+++|++|+.|.++++++++|.+++++++++|++++++||+++||||
T Consensus 115 Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~ 194 (275)
T PLN02664 115 IAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVGYGNAMELALTGRRFSGSEAKELGLVS 194 (275)
T ss_pred EEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCC-ChHHHHHHHHHHHHhccCHHHHHhhC
Q 030339 149 YYVPA-GQAQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 149 ~v~~~-~~~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+++|+ +++.+++.+++++++++||.+++.+|
T Consensus 195 ~vv~~~~~l~~~~~~~a~~ia~~~p~a~~~~K 226 (275)
T PLN02664 195 RVFGSKEDLDEGVRLIAEGIAAKSPLAVTGTK 226 (275)
T ss_pred eeeCChhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99985 88999999999999999999999887
|
|
| >PRK05995 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=284.08 Aligned_cols=177 Identities=28% Similarity=0.461 Sum_probs=159.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-cc---CchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 76 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a 76 (179)
|+++|.+++++++.|+++|+|||||. |++||+|.|++++ .. ...........+.+++..+.++|||+||+|||+|
T Consensus 32 ~~~~l~~~l~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 110 (262)
T PRK05995 32 VIAELTAAFRALDADDSVRAVVLAGA-GKAFCAGADLNWMKKMAGYSDDENRADARRLADMLRAIYRCPKPVIARVHGDA 110 (262)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEECC-CCccccCcCHHHHhhhcccCchhhhhHHHHHHHHHHHHHcCCCCEEEEECCEE
Confidence 67899999999999999999999999 6899999999876 21 1112222234566788899999999999999999
Q ss_pred cchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChH
Q 030339 77 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 156 (179)
Q Consensus 77 ~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~ 156 (179)
+|||++|+++||+||++++++|++||+++|++|+++.+ ++++++|..++++++++|++++|+||+++||||+|+|++++
T Consensus 111 ~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l 189 (262)
T PRK05995 111 YAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISP-YVIRAMGERAARRYFLTAERFDAAEALRLGLVHEVVPAEAL 189 (262)
T ss_pred EhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHH-HHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCeecCHHHH
Confidence 99999999999999999999999999999999988765 58899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCHHHHHhhC
Q 030339 157 QLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 157 ~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
.+++.+++++++++||.+++.+|
T Consensus 190 ~~~a~~~a~~la~~~~~a~~~~K 212 (262)
T PRK05995 190 DAKVDELLAALVANSPQAVRAGK 212 (262)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999876
|
|
| >PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-45 Score=285.08 Aligned_cols=177 Identities=26% Similarity=0.395 Sum_probs=158.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccccc-Cc---hhHHHHHHHHHHHHHHHhcCCCcEEEEEcccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQM-SP---SEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 76 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a 76 (179)
|+.+|.+++++++.|+++|+|||||. |+.||+|.|+.++.. .. .........+.+++..+.++||||||+|||+|
T Consensus 34 ~~~el~~al~~~~~d~~vr~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaaV~G~a 112 (265)
T PRK05674 34 MIRELILALDQVQSDASLRFLLLRGR-GRHFSAGADLAWMQQSADLDYNTNLDDARELAELMYNLYRLKIPTLAVVQGAA 112 (265)
T ss_pred HHHHHHHHHHHHhcCCCeeEEEEECC-CCCcccCcCHHHHhhcccccchhhhHHHHHHHHHHHHHHcCCCCEEEEEcCEE
Confidence 67899999999999999999999999 799999999998721 11 11112233456788889999999999999999
Q ss_pred cchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChH
Q 030339 77 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 156 (179)
Q Consensus 77 ~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~ 156 (179)
+|||++|+++||+||++++++|++||+++|++|+++.+ .+++++|.+++++++++|++++++||+++||||+|+|++++
T Consensus 113 ~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~-~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l 191 (265)
T PRK05674 113 FGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISP-FVVKAIGERAARRYALTAERFDGRRARELGLLAESYPAAEL 191 (265)
T ss_pred EechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHH-HHHHHhCHHHHHHHHHhCcccCHHHHHHCCCcceecCHHHH
Confidence 99999999999999999999999999999999987665 58889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCHHHHHhhC
Q 030339 157 QLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 157 ~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
.+++.+++++++++||.+++.+|
T Consensus 192 ~~~a~~~a~~la~~~p~a~~~~K 214 (265)
T PRK05674 192 EAQVEAWIANLLLNSPQALRASK 214 (265)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999999999999999999887
|
|
| >PRK05870 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=282.04 Aligned_cols=176 Identities=30% Similarity=0.448 Sum_probs=160.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+++|.++++.++.|+++|+|||||. |+.||+|.|++++ .............+.+++..+.++||||||+|||+|+||
T Consensus 31 ~~~~l~~~l~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 109 (249)
T PRK05870 31 MSAQLRAAVAAAEADPDVHALVVTGA-GKAFCAGADLTALGAAPGRPAEDGLRRIYDGFLAVASCPLPTIAAVNGAAVGA 109 (249)
T ss_pred HHHHHHHHHHHHhcCCCeeEEEEECC-CCCeecCcChHHHhcccccchHHHHHHHHHHHHHHHhCCCCEEEEECCEeEch
Confidence 57899999999999999999999998 7899999999987 221111223344555677789999999999999999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
|++|+++||+||++++++|++||+++|++|++++++++++++|++++++++++|++++++||+++||||+++ +++.++
T Consensus 110 G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv--~~l~~~ 187 (249)
T PRK05870 110 GLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVARAALLFGMRFDAEAAVRHGLALMVA--DDPVAA 187 (249)
T ss_pred hHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHHHHHHHHHhCCccCHHHHHHcCCHHHHH--hhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 689999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030339 160 ALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 160 a~~~a~~~~~~~~~a~~~~K 179 (179)
+.+++++++++||.+++.+|
T Consensus 188 a~~~a~~la~~~~~a~~~~K 207 (249)
T PRK05870 188 ALELAAGPAAAPRELVLATK 207 (249)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999887
|
|
| >PRK11423 methylmalonyl-CoA decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=283.67 Aligned_cols=178 Identities=22% Similarity=0.463 Sum_probs=161.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCC-CCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSV-PKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~-~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+.+|.+++++++.|+ +++|||||.+ +++||+|.|++++.....+...+...++++++.+.++|||+||+|||+|+||
T Consensus 32 ~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav~G~a~Gg 110 (261)
T PRK11423 32 LIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGRDPLSYDDPLRQILRMIQKFPKPVIAMVEGSVWGG 110 (261)
T ss_pred HHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhccccHHHHHHHHHHHHHHHHhCCCCEEEEEecEEech
Confidence 5789999999999987 9999999963 5899999999887221112223445567788999999999999999999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
|++|+++||+||++++++|++||.++|++|+.++++++++++|++++++++++|++++++||+++||||+|+|+++++++
T Consensus 111 G~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~ 190 (261)
T PRK11423 111 AFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFHIVKEMFFTASPITAQRALAVGILNHVVEVEELEDF 190 (261)
T ss_pred HHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHHHHHHHHHcCCCcCHHHHHHcCCcCcccCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030339 160 ALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 160 a~~~a~~~~~~~~~a~~~~K 179 (179)
+.++++++++++|.+++.+|
T Consensus 191 a~~~a~~l~~~~~~a~~~~K 210 (261)
T PRK11423 191 TLQMAHHISEKAPLAIAVIK 210 (261)
T ss_pred HHHHHHHHHhcCHHHHHHHH
Confidence 99999999999999999887
|
|
| >PRK08140 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=282.82 Aligned_cols=177 Identities=28% Similarity=0.458 Sum_probs=159.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccc-cC---chhH-HHHHHHHHHHHHHHhcCCCcEEEEEccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MS---PSEI-HFYVNTLRSTFSFLEALPIPTIAVIDGA 75 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~-~~---~~~~-~~~~~~~~~~~~~~~~~~kp~ia~v~G~ 75 (179)
|+++|.+++++++ |+++++|||+|. |+.||+|.|++++. .. .... ..+...+..++..+.++|||+||+|||+
T Consensus 32 ~~~~l~~~~~~~~-d~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~ 109 (262)
T PRK08140 32 MHRELREALDQVE-DDGARALLLTGA-GRGFCAGQDLADRDVTPGGAMPDLGESIETFYNPLVRRLRALPLPVIAAVNGV 109 (262)
T ss_pred HHHHHHHHHHHhc-CCCceEEEEECC-CCCcccCcChHHHhccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEECCe
Confidence 5789999999999 999999999998 78999999999872 11 1111 1222234457888999999999999999
Q ss_pred ccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCCh
Q 030339 76 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 155 (179)
Q Consensus 76 a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~ 155 (179)
|+|+|++|+++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++++||+++||||+|+|+++
T Consensus 110 a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~ 189 (262)
T PRK08140 110 AAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARALGLALLGEKLSAEQAEQWGLIWRVVDDAA 189 (262)
T ss_pred eehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCccEeeChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCHHHHHhhC
Q 030339 156 AQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 156 ~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+.+++.+++++++++||.+++.+|
T Consensus 190 l~~~a~~~a~~ia~~~~~a~~~~K 213 (262)
T PRK08140 190 LADEAQQLAAHLATQPTRGLALIK 213 (262)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999999887
|
|
| >PRK05864 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-44 Score=285.13 Aligned_cols=178 Identities=30% Similarity=0.421 Sum_probs=160.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccc-cC-------chhHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MS-------PSEIHFYVNTLRSTFSFLEALPIPTIAVI 72 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~kp~ia~v 72 (179)
|+++|.+++++++.|+++|+|||+|. +++||+|.|+.++. .. ..........+++++..+.++||||||+|
T Consensus 38 ~~~~L~~~l~~~~~d~~vrvvVl~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav 116 (276)
T PRK05864 38 VMVPLKEALAEVSYDNSVRVVVLTGA-GRGFSSGADHKSAGVVPHVEGLTRPTYALRSMELLDDVILALRRLHQPVIAAV 116 (276)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEECC-CCCeecCcchhhhhcccccccccchhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 67899999999999999999999998 78999999998761 11 11111233455677888999999999999
Q ss_pred cccccchhHHHHhhcCEEEEcCCceeecccccccccC-CcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCcccccc
Q 030339 73 DGAALGGGLEMALACDLRICGEAALLGLPETGLAIIP-GAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYV 151 (179)
Q Consensus 73 ~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p-~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~ 151 (179)
||+|+|||++|+++||+||++++++|++||+++|++| +.|.++++++++|..++++++++|++++|+||+++||||+++
T Consensus 117 ~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~A~~l~l~g~~~~a~eA~~~Glv~~vv 196 (276)
T PRK05864 117 NGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAIGSSRAFEIMLTGRDVDAEEAERIGLVSRQV 196 (276)
T ss_pred CCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhhhCHHHHHHHHHcCCccCHHHHHHcCCcceee
Confidence 9999999999999999999999999999999999997 788899999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhccCHHHHHhhC
Q 030339 152 PAGQAQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 152 ~~~~~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+++++.+++.+++++++++||.+++.+|
T Consensus 197 ~~~~l~~~a~~~a~~la~~~p~a~~~~K 224 (276)
T PRK05864 197 PDEQLLDTCYAIAARMAGFSRPGIELTK 224 (276)
T ss_pred CHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999999999999877
|
|
| >PRK08258 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-44 Score=284.58 Aligned_cols=178 Identities=22% Similarity=0.376 Sum_probs=162.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-cc----CchhHHHHHHHHHHHHHHHhcCCCcEEEEEccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QM----SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGA 75 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~ 75 (179)
|+.+|.+++++++.|+++++|||||. ++.||+|.|+.++ .. +......+.+...+++..+.++||||||+|||+
T Consensus 45 ~~~eL~~~l~~~~~d~~vr~vVltg~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~ 123 (277)
T PRK08258 45 SYAELRDLFRELVYADDVKAVVLTGA-GGNFCSGGDVHEIIGPLTKMDMPELLAFTRMTGDLVKAMRACPQPIIAAVDGV 123 (277)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEeCC-CCCcccccCHHHHhccccccChhHHHHHHHHHHHHHHHHHhCCCCEEEEECCe
Confidence 57899999999999999999999998 7899999999987 21 122233444555678889999999999999999
Q ss_pred ccchhHHHHhhcCEEEEcCCceeecccccccccC-CcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCC
Q 030339 76 ALGGGLEMALACDLRICGEAALLGLPETGLAIIP-GAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG 154 (179)
Q Consensus 76 a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p-~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~ 154 (179)
|+|||++|+++||+||++++++|++||.++|++| ++|+++++++++|..++++++++|++++++||+++||||+|++++
T Consensus 124 a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 203 (277)
T PRK08258 124 CAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGRASELLYTGRSMSAEEGERWGFFNRLVEPE 203 (277)
T ss_pred eehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCCcEecCHH
Confidence 9999999999999999999999999999999995 778899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhccCHHHHHhhC
Q 030339 155 QAQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 155 ~~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
++.+++.+++++++++||.+++.+|
T Consensus 204 ~l~~~a~~~a~~la~~~~~a~~~~K 228 (277)
T PRK08258 204 ELLAEAQALARRLAAGPTFAHGMTK 228 (277)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999999999887
|
|
| >PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-45 Score=282.92 Aligned_cols=178 Identities=43% Similarity=0.724 Sum_probs=168.8
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+++|.++|+.++.|+++++||++|. ++.||+|.|++++ ..+.+....+.+.++.++.++.++||||||+|||+|+|+
T Consensus 26 ~~~~l~~~l~~~~~d~~v~vvv~~~~-~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~Gg 104 (245)
T PF00378_consen 26 MLDELEEALDEAEADPDVKVVVISGG-GKAFCAGADLKEFLNSDEEEAREFFRRFQELLSRLANFPKPTIAAVNGHAVGG 104 (245)
T ss_dssp HHHHHHHHHHHHHHSTTESEEEEEES-TSESBESB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEEESSEEETH
T ss_pred HHHHHHHHHHHHHhcCCccEEEEeec-ccccccccchhhhhccccccccccchhhccccccchhhhhheeeccccccccc
Confidence 57899999999999999999999998 8999999999988 445566778888999999999999999999999999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
|++++++||+||++++++|++||.++|++|++++++++++++|.+.+++++++|++++|+||+++||||+|++++++.++
T Consensus 105 G~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~ 184 (245)
T PF00378_consen 105 GFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLLTGEPISAEEALELGLVDEVVPDEELDEE 184 (245)
T ss_dssp HHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHHHTCEEEHHHHHHTTSSSEEESGGGHHHH
T ss_pred ccccccccceEEeecccceeeeecccCcccccccccccceeeecccccccccccccchhHHHHhhcceeEEcCchhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030339 160 ALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 160 a~~~a~~~~~~~~~a~~~~K 179 (179)
+.+++++++..|+.+++.+|
T Consensus 185 a~~~a~~l~~~~~~a~~~~K 204 (245)
T PF00378_consen 185 ALELAKRLAAKPPSALRATK 204 (245)
T ss_dssp HHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHH
Confidence 99999999999999999876
|
Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A .... |
| >PRK06688 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-44 Score=282.14 Aligned_cols=177 Identities=32% Similarity=0.557 Sum_probs=163.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+++|.+++++++.|+++++|||+|. ++.||+|.|++++ ...... ..+...+++++.++.++|||+||+|||+|+||
T Consensus 33 ~~~~l~~~l~~~~~d~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~Gg 110 (259)
T PRK06688 33 MYQALADALEAAATDPAVRVVVLTGA-GRAFSAGGDIKDFPKAPPKP-PDELAPVNRFLRAIAALPKPVVAAVNGPAVGV 110 (259)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEECC-CCCccCccCHHHHhccCcch-HHHHHHHHHHHHHHHcCCCCEEEEECCeeecH
Confidence 57899999999999999999999998 6899999999987 222211 34456667888999999999999999999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
|++|+++||+||++++++|++||+++|++|++++++++++++|...+++++++|++++++||+++||||++++++++.++
T Consensus 111 G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~ 190 (259)
T PRK06688 111 GVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARAAEMLLLGEPLSAEEALRIGLVNRVVPAAELDAE 190 (259)
T ss_pred HHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHHHHHHHHhCCccCHHHHHHcCCcceecCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030339 160 ALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 160 a~~~a~~~~~~~~~a~~~~K 179 (179)
+.++++++++.||.+++.+|
T Consensus 191 a~~~a~~i~~~~~~a~~~~K 210 (259)
T PRK06688 191 ADAQAAKLAAGPASALRYTK 210 (259)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999998876
|
|
| >PRK07396 dihydroxynaphthoic acid synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-44 Score=283.64 Aligned_cols=178 Identities=27% Similarity=0.483 Sum_probs=159.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccccc-C--chhHHHHHHHHHHHHHHHhcCCCcEEEEEccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQM-S--PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 77 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~ 77 (179)
|+.+|.++++.++.|+++|+|||||.+++.||+|.|++++.. . ........ ....++..+.++||||||+|||+|+
T Consensus 41 ~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~kPvIAav~G~a~ 119 (273)
T PRK07396 41 TVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVPRL-NVLDLQRLIRTCPKPVIAMVAGYAI 119 (273)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccchhhhhhh-HHHHHHHHHHhCCCCEEEEECCEEe
Confidence 678999999999999999999999984479999999987621 1 11111111 2335677889999999999999999
Q ss_pred chhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHH
Q 030339 78 GGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 157 (179)
Q Consensus 78 g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~ 157 (179)
|||++|+++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++|+||+++||||+|+|++++.
T Consensus 120 GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~a~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~ 199 (273)
T PRK07396 120 GGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKKAREIWFLCRQYDAQEALDMGLVNTVVPLADLE 199 (273)
T ss_pred hHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHHHHHHHHHhCCCcCHHHHHHcCCcCeecCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCHHHHHhhC
Q 030339 158 LKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 158 ~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+++.+++++++++||.+++.+|
T Consensus 200 ~~a~~~a~~la~~~~~a~~~~K 221 (273)
T PRK07396 200 KETVRWCREMLQNSPMALRCLK 221 (273)
T ss_pred HHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999999887
|
|
| >PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-44 Score=280.43 Aligned_cols=176 Identities=26% Similarity=0.432 Sum_probs=160.5
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchh
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G 80 (179)
|+++|.+++++++.|+++|+|||||. |++||+|.|+.++.........+. . ++++..+.++|||+||+|||+|+|+|
T Consensus 33 ~~~~L~~~l~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~-~-~~~~~~l~~~~kPvIaav~G~a~GgG 109 (249)
T PRK07110 33 LCDQLHEAFDTIAQDPRYKVVILTGY-PNYFATGGTQEGLLSLQTGKGTFT-E-ANLYSLALNCPIPVIAAMQGHAIGGG 109 (249)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCCeeCCcChHHHhhccchhhhHh-h-HHHHHHHHcCCCCEEEEecCceechH
Confidence 57899999999999999999999998 789999999988721111111222 2 56788899999999999999999999
Q ss_pred HHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHHH
Q 030339 81 LEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKA 160 (179)
Q Consensus 81 ~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~a 160 (179)
++|+++||+||++++++|++||.++|++|++++++++++++|++++++++++|++++++||+++||||+|++++++.+++
T Consensus 110 ~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a 189 (249)
T PRK07110 110 LVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALGQEMLLTARYYRGAELKKRGVPFPVLPRAEVLEKA 189 (249)
T ss_pred HHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCeEEeChHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCHHHHHhhC
Q 030339 161 LEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 161 ~~~a~~~~~~~~~a~~~~K 179 (179)
.+++++++++|+.+++.+|
T Consensus 190 ~~~a~~la~~~~~a~~~~K 208 (249)
T PRK07110 190 LELARSLAEKPRHSLVLLK 208 (249)
T ss_pred HHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999887
|
|
| >PRK06494 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-44 Score=281.44 Aligned_cols=176 Identities=33% Similarity=0.471 Sum_probs=156.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccc-cCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+.+|.++++.++.|+++++|||||.+++.||+|.|++++. ...... ....+..+. .+.++||||||+|||+|+||
T Consensus 32 ~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~--~~~~~~~~~-~~~~~~kPvIaav~G~a~Gg 108 (259)
T PRK06494 32 AHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGW--PESGFGGLT-SRFDLDKPIIAAVNGVAMGG 108 (259)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcchh--hhHHHHHHH-HHhcCCCCEEEEECCEEecH
Confidence 67899999999999999999999998557999999998872 111111 011222333 34589999999999999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
|++|+++||+||++++++|++||+++|++|++++++++++++|+.++++++++|++++++||+++||||+++++++++++
T Consensus 109 G~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~ 188 (259)
T PRK06494 109 GFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKRAMGMILTGRRVTAREGLELGFVNEVVPAGELLAA 188 (259)
T ss_pred HHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHHHHHHHHcCCcCCHHHHHHcCCCcEecCHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030339 160 ALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 160 a~~~a~~~~~~~~~a~~~~K 179 (179)
+.+++++++++||.+++.+|
T Consensus 189 a~~~a~~la~~~~~a~~~~K 208 (259)
T PRK06494 189 AERWADDILACSPLSIRASK 208 (259)
T ss_pred HHHHHHHHHhcCHHHHHHHH
Confidence 99999999999999999877
|
|
| >PRK07468 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-44 Score=281.33 Aligned_cols=177 Identities=26% Similarity=0.400 Sum_probs=159.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccccc----CchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQM----SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 76 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a 76 (179)
|+.+|.++++.++.|+++++|||||. ++.||+|.|+.++.. ...........+..+++.+.++||||||+|||+|
T Consensus 33 ~~~~l~~~l~~~~~d~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 111 (262)
T PRK07468 33 MIAELTTAARRLAADAAVRVVVLTGA-GKSFCAGGDLGWMRAQMTADRATRIEEARRLAMMLKALNDLPKPLIGRIQGQA 111 (262)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEECC-CCcccCCcCHHHHHhhcccchhhHHHHHHHHHHHHHHHHcCCCCEEEEECCEE
Confidence 67899999999999999999999998 789999999998621 1111222334556788899999999999999999
Q ss_pred cchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChH
Q 030339 77 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 156 (179)
Q Consensus 77 ~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~ 156 (179)
+|||++|+++||+||++++++|++||.++|++|++++++++ +++|..++++|+++|++++++||+++||||+|+|++++
T Consensus 112 ~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~-~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l 190 (262)
T PRK07468 112 FGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVV-ARMGEANARRVFMSARLFDAEEAVRLGLLSRVVPAERL 190 (262)
T ss_pred EhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHH-hhccHHHHHHHHHhCCccCHHHHHHcCCcceecCHHHH
Confidence 99999999999999999999999999999999999888755 55999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCHHHHHhhC
Q 030339 157 QLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 157 ~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
.+++.++++++++.||.+++.+|
T Consensus 191 ~~~~~~~a~~l~~~~~~a~~~~K 213 (262)
T PRK07468 191 DAAVEAEVTPYLSCAPGAVAAAK 213 (262)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999999999999999998877
|
|
| >PRK08260 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-44 Score=285.60 Aligned_cols=178 Identities=28% Similarity=0.380 Sum_probs=160.5
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccccc--C-c--------------h-hHHHHHHHHHHHHHHHh
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQM--S-P--------------S-EIHFYVNTLRSTFSFLE 62 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~--~-~--------------~-~~~~~~~~~~~~~~~~~ 62 (179)
|+.+|.++|++++.|+++++|||||. ++.||+|.|++++.. . . . ....+.+.+..++..+.
T Consensus 32 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 110 (296)
T PRK08260 32 MARELIEAFDAADADDAVRAVIVTGA-GRAFCAGADLSAGGNTFDLDAPRTPVEADEEDRADPSDDGVRDGGGRVTLRIF 110 (296)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEECC-CCCeecCcChHHhhhcccccccccccccccccccchhHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999998 799999999987621 0 0 0 11223334456788899
Q ss_pred cCCCcEEEEEcccccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHH
Q 030339 63 ALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAM 142 (179)
Q Consensus 63 ~~~kp~ia~v~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~ 142 (179)
++||||||+|||+|+|||++|+++||+||++++++|++||.++|++|++++++++++++|..++++++++|++++++||+
T Consensus 111 ~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~llltg~~~~a~eA~ 190 (296)
T PRK08260 111 DSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEAASSWFLPRLVGLQTALEWVYSGRVFDAQEAL 190 (296)
T ss_pred hCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCcchhhhHHHhhCHHHHHHHHHcCCccCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCccccccCCChHHHHHHHHHHHHhcc-CHHHHHhhC
Q 030339 143 SLGLVNYYVPAGQAQLKALEIAQEINQK-VQSVFRILL 179 (179)
Q Consensus 143 ~~Glv~~v~~~~~~~~~a~~~a~~~~~~-~~~a~~~~K 179 (179)
++||||+|++++++.+++.+++++++++ +|.+++.+|
T Consensus 191 ~~GLv~~vv~~~~l~~~a~~~a~~i~~~~~~~a~~~~K 228 (296)
T PRK08260 191 DGGLVRSVHPPDELLPAARALAREIADNTSPVSVALTR 228 (296)
T ss_pred HCCCceeecCHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 9999999999999999999999999995 999998876
|
|
| >PLN02888 enoyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-44 Score=281.57 Aligned_cols=175 Identities=28% Similarity=0.447 Sum_probs=159.1
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccccc-CchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQM-SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+.+|.++++.++.|+++|+|||||. +++||+|.|+.++.. ..... .....+++..+.++|||+||+|||+|+|+
T Consensus 38 ~~~~l~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~---~~~~~~~~~~i~~~~kPvIaav~G~a~Gg 113 (265)
T PLN02888 38 MMVELAAAFKRLDEDDSVKVIILTGS-GRAFCSGVDLTAAEEVFKGDV---KDVETDPVAQMERCRKPIIGAINGFAITA 113 (265)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEECC-CCcccCCCCHHHHHhhccchh---hHHHHHHHHHHHhCCCCEEEEECCeeech
Confidence 67899999999999999999999998 689999999987621 11111 11234567788999999999999999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
|++|+++||+||++++++|++||.++|++|++++++++++++|+.++++++++|++++++||+++||||++++++++.++
T Consensus 114 G~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~ 193 (265)
T PLN02888 114 GFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANRAREVSLTAMPLTAETAERWGLVNHVVEESELLKK 193 (265)
T ss_pred HHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCccEeeChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030339 160 ALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 160 a~~~a~~~~~~~~~a~~~~K 179 (179)
+.++++++++.+|.+++.+|
T Consensus 194 a~~~a~~la~~~~~a~~~~K 213 (265)
T PLN02888 194 AREVAEAIIKNNQGMVLRYK 213 (265)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999887
|
|
| >PRK07659 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-44 Score=280.47 Aligned_cols=176 Identities=33% Similarity=0.479 Sum_probs=161.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-cc-CchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QM-SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 78 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g 78 (179)
|+.+|.++++++ .|+++++|||+|. ++.||+|.|++++ .. .......+...+++++..+.++||||||+|||+|+|
T Consensus 34 ~~~~l~~~l~~~-~d~~vrvvvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~pvIaav~G~a~G 111 (260)
T PRK07659 34 MLKELLQALKEV-AESSAHIVVLRGN-GRGFSAGGDIKMMLSSNDESKFDGVMNTISEIVVTLYTMPKLTISAIHGPAAG 111 (260)
T ss_pred HHHHHHHHHHHh-cCCCeeEEEEECC-CCCcccccCHHHHhhccCchhHHHHHHHHHHHHHHHHhCCCCEEEEecCceec
Confidence 578999999999 5889999999998 7899999999987 22 223334555667788889999999999999999999
Q ss_pred hhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHH
Q 030339 79 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 158 (179)
Q Consensus 79 ~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~ 158 (179)
+|++|+++||+||++++++|++||+++|++|+++++++|++++|+.++++++++|++++++||+++||||+++ ++++.+
T Consensus 112 gG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv-~~~~~~ 190 (260)
T PRK07659 112 LGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQIIWEGKKLSATEALDLGLIDEVI-GGDFQT 190 (260)
T ss_pred HHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHHHHHHHHhCCccCHHHHHHcCChHHHh-hhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 788999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030339 159 KALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 159 ~a~~~a~~~~~~~~~a~~~~K 179 (179)
++.+++++++++||.+++.+|
T Consensus 191 ~a~~~a~~l~~~~~~a~~~~K 211 (260)
T PRK07659 191 AAKQKISEWLQKPLKAMIETK 211 (260)
T ss_pred HHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999998877
|
|
| >PRK07799 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-44 Score=280.49 Aligned_cols=177 Identities=32% Similarity=0.539 Sum_probs=157.3
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCch-hHH-H-H-HHHHHHHHHHHhcCCCcEEEEEccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPS-EIH-F-Y-VNTLRSTFSFLEALPIPTIAVIDGA 75 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~~-~~~-~-~-~~~~~~~~~~~~~~~kp~ia~v~G~ 75 (179)
|+++|.+++++++.|+++|+|||||. |+.||+|.|++++ ..... ... . + ...+..+ .++.++||||||+|||+
T Consensus 33 ~~~~l~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~kpvIaav~G~ 110 (263)
T PRK07799 33 MLRIMVDAWDRVDNDPDIRSCILTGA-GGAFCAGMDLKAATKKPPGDSFKDGSYDPSRIDAL-LKGRRLTKPLIAAVEGP 110 (263)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCccccccCHHHHhhccccchhhhhhhhhhHHHHH-HHHhcCCCCEEEEECCe
Confidence 68899999999999999999999998 7899999999987 22111 111 1 1 1222223 34789999999999999
Q ss_pred ccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCCh
Q 030339 76 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 155 (179)
Q Consensus 76 a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~ 155 (179)
|+|||++|+++||+||++++++|++||+++|++|+++++++|++++|.+++++++++|++++++||+++||||+|+|+++
T Consensus 111 a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~ 190 (263)
T PRK07799 111 AIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEIGLIGHVVPDGQ 190 (263)
T ss_pred EeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccEecCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCHHHHHhhC
Q 030339 156 AQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 156 ~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+.+++.++++++++.||.+++.+|
T Consensus 191 l~~~a~~~a~~~~~~~~~a~~~~K 214 (263)
T PRK07799 191 ALDKALELAELINANGPLAVQAIL 214 (263)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHH
Confidence 999999999999999999998876
|
|
| >PRK05981 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-44 Score=280.71 Aligned_cols=178 Identities=26% Similarity=0.462 Sum_probs=161.7
Q ss_pred CHHHHHHHHHHhhcCC-CceEEEEEeCCCCccccccCcccccc-C--c----hhHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 030339 1 MLRGLKHAFETISEDS-SANVVMIRSSVPKVFCAGADLKVLQM-S--P----SEIHFYVNTLRSTFSFLEALPIPTIAVI 72 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~-~v~~vvl~g~~~~~F~~G~D~~~~~~-~--~----~~~~~~~~~~~~~~~~~~~~~kp~ia~v 72 (179)
|+.+|.++++.++.|+ ++++|||||. ++.||+|.|++++.. . . .....+...+..++.++.++||||||+|
T Consensus 32 ~~~~l~~~l~~~~~d~~~v~vvvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav 110 (266)
T PRK05981 32 MLGGLAEALDAIEDGKAEVRCLVLTGA-GRGFCTGANLQGRGSGGRESDSGGDAGAALETAYHPFLRRLRNLPCPIVTAV 110 (266)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEeCC-CCCcccccCHHhhhcccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 6889999999999876 4999999998 689999999998721 1 1 1123344456778889999999999999
Q ss_pred cccccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccC
Q 030339 73 DGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVP 152 (179)
Q Consensus 73 ~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~ 152 (179)
||+|+|||++|+++||+||++++++|++||.++|++|++++++++++++|+..+++++++|++++++||+++||||+++|
T Consensus 111 ~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~ 190 (266)
T PRK05981 111 NGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLVGKARAMELSLLGEKLPAETALQWGLVNRVVD 190 (266)
T ss_pred CCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHHhHHHHHHHHHHhCCCcCHHHHHHcCCceEeeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhccCHHHHHhhC
Q 030339 153 AGQAQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 153 ~~~~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
++++.+++.++++++++.||.+++.+|
T Consensus 191 ~~~~~~~a~~~a~~l~~~~~~a~~~~K 217 (266)
T PRK05981 191 DAELMAEAMKLAHELANGPTVALGLIR 217 (266)
T ss_pred HhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999998876
|
|
| >PRK08252 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-44 Score=278.41 Aligned_cols=175 Identities=31% Similarity=0.482 Sum_probs=155.3
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchh
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G 80 (179)
|+++|.+++++++.|+++++|||||. |+.||+|.|++++...... ......+..++ ...+||||||+|||+|+|||
T Consensus 31 ~~~~l~~~l~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~-~~~~~~~~~~~--~~~~~kPvIaav~G~a~GgG 106 (254)
T PRK08252 31 VAQGLAAALDELDADPDLSVGILTGA-GGTFCAGMDLKAFARGERP-SIPGRGFGGLT--ERPPRKPLIAAVEGYALAGG 106 (254)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEECC-CCceEcCcCHHHHhcccch-hhhHHHHHHHH--HhcCCCCEEEEECCEEehHH
Confidence 68899999999999999999999998 7899999999987211110 11111222222 14799999999999999999
Q ss_pred HHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHHH
Q 030339 81 LEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKA 160 (179)
Q Consensus 81 ~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~a 160 (179)
++|+++||++|++++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|++++++.+++
T Consensus 107 ~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a 186 (254)
T PRK08252 107 FELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELALTGDMLTAERAHELGLVNRLTEPGQALDAA 186 (254)
T ss_pred HHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHHHHHHHcCCccCHHHHHHcCCcceecCcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCHHHHHhhC
Q 030339 161 LEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 161 ~~~a~~~~~~~~~a~~~~K 179 (179)
.++++++++.||.+++.+|
T Consensus 187 ~~~a~~l~~~~~~a~~~~K 205 (254)
T PRK08252 187 LELAERIAANGPLAVAASK 205 (254)
T ss_pred HHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999876
|
|
| >PRK07938 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-44 Score=277.36 Aligned_cols=175 Identities=27% Similarity=0.409 Sum_probs=157.2
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccccc-C-chhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQM-S-PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 78 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g 78 (179)
|+.+|.+++++++.|+++|+|||||. |++||+|.|+.++.. . ..........+.+++..+.++|||+||+|||+|+|
T Consensus 29 ~~~~l~~~l~~~~~d~~vr~vVltg~-G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~G 107 (249)
T PRK07938 29 GWFALADAITAAGADPDTRVVVLRAE-GRGFNAGVDIKELQATPGFTALIDANRGCFAAFRAVYECAVPVIAAVHGFCLG 107 (249)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEEECC-CCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEee
Confidence 67899999999999999999999998 799999999988721 1 12222233445667888999999999999999999
Q ss_pred hhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHH
Q 030339 79 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 158 (179)
Q Consensus 79 ~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~ 158 (179)
||++|+++||+||++++++|++||+++|++ ++++++++++|+.++++++++|++++++||+++||||+++|++++++
T Consensus 108 gG~~Lal~cD~ria~~~a~f~~pe~~~G~~---g~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~ 184 (249)
T PRK07938 108 GGIGLVGNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQHLMRALFFTAATITAAELHHFGSVEEVVPRDQLDE 184 (249)
T ss_pred hHHHHHHhCCEEEEeCCCEeeCccceecCc---hhHHHHHHhcCHHHHHHHHHhCCcCCHHHHHHCCCccEEeCHHHHHH
Confidence 999999999999999999999999999986 35678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030339 159 KALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 159 ~a~~~a~~~~~~~~~a~~~~K 179 (179)
++.+++++++++||.+++.+|
T Consensus 185 ~a~~~a~~la~~~~~a~~~~K 205 (249)
T PRK07938 185 AALEVARKIAAKDTRVIRAAK 205 (249)
T ss_pred HHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999998877
|
|
| >PRK08259 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-44 Score=278.58 Aligned_cols=176 Identities=38% Similarity=0.534 Sum_probs=155.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccc-cCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+.+|.+++++++.|+++++|||||. +++||+|.|++++. ........ .........+.++|||+||+|||+|+|+
T Consensus 31 ~~~~l~~~l~~~~~d~~vr~vvltg~-g~~FcaG~Dl~~~~~~~~~~~~~--~~~~~~~~~~~~~~kPvIaav~G~a~Gg 107 (254)
T PRK08259 31 TAAALADAFRAFDADDAASVAVLWGA-GGTFCAGADLKAVGTGRGNRLHP--SGDGPMGPSRMRLSKPVIAAVSGYAVAG 107 (254)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEECC-CCCccCCcChHHHhcccchhhhh--hhcchhhhHHhcCCCCEEEEECCEEEhH
Confidence 67899999999999999999999998 78999999999872 11111111 0111122234589999999999999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
|++|+++||+||++++++|++||.++|++|..+++++|++++|+.++++++++|++++++||+++||||+|+|++++.++
T Consensus 108 G~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~ 187 (254)
T PRK08259 108 GLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDLILTGRPVDADEALAIGLANRVVPKGQARAA 187 (254)
T ss_pred HHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCEeeChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030339 160 ALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 160 a~~~a~~~~~~~~~a~~~~K 179 (179)
+.++++++++.||.+++.+|
T Consensus 188 a~~~a~~la~~~~~a~~~~K 207 (254)
T PRK08259 188 AEELAAELAAFPQTCLRADR 207 (254)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999887
|
|
| >PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=280.73 Aligned_cols=179 Identities=25% Similarity=0.355 Sum_probs=160.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCC-CCccccccCccccc-cC--chhHHHHHHHHHHHHHHHhcCCCcEEEEEcccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSV-PKVFCAGADLKVLQ-MS--PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 76 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~-~~~F~~G~D~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a 76 (179)
|+.+|.+++++++.|+++|+|||||.+ +++||+|.|+.++. .. .+....+......++.++.++||||||+|||+|
T Consensus 39 ~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a 118 (278)
T PLN03214 39 MWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYAEFWLTQTTFLVRLLRSRLATVCAIRGAC 118 (278)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCcc
Confidence 678999999999999999999999984 27999999998862 11 111223333345577889999999999999999
Q ss_pred cchhHHHHhhcCEEEEcCCceeecccccccc-cCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCCh
Q 030339 77 LGGGLEMALACDLRICGEAALLGLPETGLAI-IPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 155 (179)
Q Consensus 77 ~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~-~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~ 155 (179)
+|+|++|+++||+||++++++|++||+++|+ +|+.++++++++++|..++++++++|++++++||+++||||+|+++++
T Consensus 119 ~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~G~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~ 198 (278)
T PLN03214 119 PAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVIDRKVAESLLLRGRLVRPAEAKQLGLIDEVVPAAA 198 (278)
T ss_pred cchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhcCHHHHHHHHHcCCccCHHHHHHcCCCcEecChHH
Confidence 9999999999999999999999999999999 598889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCHHHHHhhC
Q 030339 156 AQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 156 ~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+.+++.++++++++.||.+++.+|
T Consensus 199 l~~~a~~~a~~l~~~~~~a~~~~K 222 (278)
T PLN03214 199 LMEAAASAMERALKLPSAARAATK 222 (278)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999887
|
|
| >PLN02921 naphthoate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=284.35 Aligned_cols=179 Identities=27% Similarity=0.452 Sum_probs=159.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccccc-CchhHHHHHH-HHHHHHHHHhcCCCcEEEEEcccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQM-SPSEIHFYVN-TLRSTFSFLEALPIPTIAVIDGAALG 78 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~kp~ia~v~G~a~g 78 (179)
|+.+|.++++.++.|+++++|||+|.++++||+|.|+.++.. .......... ...+++..+.++||||||+|||+|+|
T Consensus 95 ~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAaVnG~a~G 174 (327)
T PLN02921 95 TVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQIQIRRLPKPVIAMVAGYAVG 174 (327)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccchhHHHHHHHHHHHHHHHhCCCCEEEEECCEEec
Confidence 688999999999999999999999994489999999987621 1110111111 12346778899999999999999999
Q ss_pred hhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHH
Q 030339 79 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 158 (179)
Q Consensus 79 ~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~ 158 (179)
||++|+++||+||++++++|++||.++|++|.+++++++++++|..++++++++|++++|+||+++||||+|++++++.+
T Consensus 175 GG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~~~A~ellltG~~~~A~eA~~~GLV~~vv~~~~l~~ 254 (327)
T PLN02921 175 GGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQKKAREMWFLARFYTASEALKMGLVNTVVPLDELEG 254 (327)
T ss_pred HHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCceEEeCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030339 159 KALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 159 ~a~~~a~~~~~~~~~a~~~~K 179 (179)
++.+++++++++||.+++.+|
T Consensus 255 ~a~~~a~~la~~~p~al~~~K 275 (327)
T PLN02921 255 ETVKWCREILRNSPTAIRVLK 275 (327)
T ss_pred HHHHHHHHHHccCHHHHHHHH
Confidence 999999999999999999887
|
|
| >PRK06495 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=276.77 Aligned_cols=175 Identities=32% Similarity=0.565 Sum_probs=158.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccc-c--CchhHHHHHHHHHHHHHHHhcCCCcEEEEEccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-M--SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 77 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~ 77 (179)
|+.+|.+++++++.|+++|+|||+|. |+.||+|.|++++. . .......+...+.+++.++.++|||+||+|||+|+
T Consensus 31 ~~~~l~~al~~~~~d~~vr~vVl~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~ 109 (257)
T PRK06495 31 LRDELIAVFDEISERPDVRVVVLTGA-GKVFCAGADLKGRPDVIKGPGDLRAHNRRTRECFHAIRECAKPVIAAVNGPAL 109 (257)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEECC-CCCcccCcCHHhHhhccCCchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeee
Confidence 67899999999999999999999998 79999999999872 1 12223334455667888999999999999999999
Q ss_pred chhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHH
Q 030339 78 GGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 157 (179)
Q Consensus 78 g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~ 157 (179)
|||++|+++||+||++++++|++||+++|++ ++++++++++|+.++++++++|++++++||+++||||++++++++.
T Consensus 110 GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~---~~~~~l~~~~g~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~~~~~ 186 (257)
T PRK06495 110 GAGLGLVASCDIIVASENAVFGLPEIDVGLA---GGGKHAMRLFGHSLTRRMMLTGYRVPAAELYRRGVIEACLPPEELM 186 (257)
T ss_pred hhHHHHHHhCCEEEecCCCEeeChhhccCcc---ccHHHHHHHhCHHHHHHHHHcCCeeCHHHHHHcCCcceecCHHHHH
Confidence 9999999999999999999999999999997 3567789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCHHHHHhhC
Q 030339 158 LKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 158 ~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+++.+++++++++||.+++.+|
T Consensus 187 ~~a~~~a~~l~~~~~~a~~~~K 208 (257)
T PRK06495 187 PEAMEIAREIASKSPLATRLAK 208 (257)
T ss_pred HHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999999887
|
|
| >COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=276.21 Aligned_cols=177 Identities=41% Similarity=0.666 Sum_probs=161.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccccc--CchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQM--SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 78 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g 78 (179)
|+.+|.++++.++.|+++|+|||||. +++||+|.|+..+.. .......+....+.++..+.++||||||+|||+|+|
T Consensus 33 ~~~~l~~al~~~~~d~~vr~vvltg~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 111 (257)
T COG1024 33 MLDELAEALDEAEADPDVRVVVLTGA-GKAFSAGADLKELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAAVNGYALG 111 (257)
T ss_pred HHHHHHHHHHHHhhCCCeEEEEEECC-CCceecccCHHHHhcccchhHHHHHHhHHHHHHHHHHhCCCCEEEEEcceEee
Confidence 67899999999999999999999999 599999999998732 222222566667779999999999999999999999
Q ss_pred hhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCC-ChHH
Q 030339 79 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA-GQAQ 157 (179)
Q Consensus 79 ~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~-~~~~ 157 (179)
||++|+++||+||++++++|++||+++|++|++|+++++++.+|...+++++++|++++++||+++|||++++++ +++.
T Consensus 112 gG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~ 191 (257)
T COG1024 112 GGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAKELLLTGEPISAAEALELGLVDEVVPDAEELL 191 (257)
T ss_pred chhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHcCCcCeeeCCHHHHH
Confidence 999999999999999999999999999999987999999999999999999999999999999999999999985 7999
Q ss_pred HHHHHHHHHHhccCHHHHHhhC
Q 030339 158 LKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 158 ~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+.+.+++++++. +|.++..+|
T Consensus 192 ~~a~~~a~~~a~-~~~a~~~~k 212 (257)
T COG1024 192 ERALELARRLAA-PPLALAATK 212 (257)
T ss_pred HHHHHHHHHHcc-CHHHHHHHH
Confidence 999999999998 888887765
|
|
| >PRK06210 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-43 Score=278.15 Aligned_cols=178 Identities=30% Similarity=0.505 Sum_probs=158.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCchhH------HHH----HHHHHHHHHHHhcCCCcEE
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEI------HFY----VNTLRSTFSFLEALPIPTI 69 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~~~~------~~~----~~~~~~~~~~~~~~~kp~i 69 (179)
|+++|.++++.++.|+++++|||+|. |+.||+|.|++++ ....... ..+ ...+++++..+.++|||||
T Consensus 34 ~~~~L~~~l~~~~~d~~vr~vVl~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 112 (272)
T PRK06210 34 MEAEVYAAMDRAEADPAVRVIVLTGA-GRGFCAGADMGELQTIDPSDGRRDTDVRPFVGNRRPDYQTRYHFLTALRKPVI 112 (272)
T ss_pred HHHHHHHHHHHhccCCCeeEEEEECC-CCCcccccCHHHHhccCcccccccccchhhhhhhhhhHHHHHHHHHhCCCCEE
Confidence 57899999999999999999999998 7899999999987 2111100 011 1123456778999999999
Q ss_pred EEEcccccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCcccc
Q 030339 70 AVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNY 149 (179)
Q Consensus 70 a~v~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~ 149 (179)
|+|||+|+|||++|+++||++|++++++|++||+++|++|++++++++++++|++++++++++|++++|+||+++||||+
T Consensus 113 aav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~ 192 (272)
T PRK06210 113 AAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWILPRLVGHANALDLLLSARTFYAEEALRLGLVNR 192 (272)
T ss_pred EEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhhhHhhhCHHHHHHHHHcCCccCHHHHHHcCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCChHHHHHHHHHHHHhcc-CHHHHHhhC
Q 030339 150 YVPAGQAQLKALEIAQEINQK-VQSVFRILL 179 (179)
Q Consensus 150 v~~~~~~~~~a~~~a~~~~~~-~~~a~~~~K 179 (179)
+++++++.+++.++++++++. +|.++..+|
T Consensus 193 vv~~~~l~~~a~~~a~~i~~~~~p~a~~~~K 223 (272)
T PRK06210 193 VVPPDELMERTLAYAEDLARNVSPASMAVIK 223 (272)
T ss_pred ecCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999999999985 999998876
|
|
| >TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-43 Score=273.48 Aligned_cols=173 Identities=26% Similarity=0.409 Sum_probs=153.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchh
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G 80 (179)
|+.+|.+++++++.||++|+|||||. |++||+|.|+.++.. .........+.+++..+.++||||||+|||+|+|+|
T Consensus 28 ~~~~l~~~l~~~~~~~~vr~vVl~g~-g~~FcaG~Dl~~~~~--~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG 104 (251)
T TIGR03189 28 MIAALSAALGEHLEDSALRAVLLDAE-GPHFSFGASVAEHMP--DQCAAMLASLHKLVIAMLDSPVPILVAVRGQCLGGG 104 (251)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEECC-CCceecCcChhhhCc--hhHHHHHHHHHHHHHHHHhCCCCEEEEecCeeeeHH
Confidence 67899999999999999999999998 789999999987521 122233445567888999999999999999999999
Q ss_pred HHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHHH
Q 030339 81 LEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKA 160 (179)
Q Consensus 81 ~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~a 160 (179)
++|+++||+||++++++|++||+++|++|++ +++++++++|+..+++++++|++++++||+++||||+|+++.+ +++
T Consensus 105 ~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~-~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~~~~--~~a 181 (251)
T TIGR03189 105 LEVAAAGNLMFAAPDAKLGQPEIVLGVFAPA-ASCLLPERMGRVAAEDLLYSGRSIDGAEGARIGLANAVAEDPE--NAA 181 (251)
T ss_pred HHHHHhCCEEEEcCCCEEeCchhhcCCCCCc-hHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCcceecCcHH--HHH
Confidence 9999999999999999999999999999874 5779999999999999999999999999999999999997543 466
Q ss_pred HHH-HHHHhccCHHHHHhhC
Q 030339 161 LEI-AQEINQKVQSVFRILL 179 (179)
Q Consensus 161 ~~~-a~~~~~~~~~a~~~~K 179 (179)
.++ +++++++||.+++.+|
T Consensus 182 ~~~~a~~la~~~p~a~~~~K 201 (251)
T TIGR03189 182 LAWFDEHPAKLSASSLRFAV 201 (251)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 666 7999999999998876
|
This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation. |
| >PRK07509 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-43 Score=273.46 Aligned_cols=176 Identities=29% Similarity=0.476 Sum_probs=156.5
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccc-cCch---hHHH----HHHHHHHHHHHHhcCCCcEEEEE
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MSPS---EIHF----YVNTLRSTFSFLEALPIPTIAVI 72 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~-~~~~---~~~~----~~~~~~~~~~~~~~~~kp~ia~v 72 (179)
|+++|.++++.++.|+++++|||+|. |+.||+|.|++++. .... .... ....+..++..+.++||||||+|
T Consensus 31 ~~~~l~~al~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpvIaav 109 (262)
T PRK07509 31 MFEELIATIKRLKKDRGIRAVILSGE-GGAFCAGLDVKSVASSPGNAVKLLFKRLPGNANLAQRVSLGWRRLPVPVIAAL 109 (262)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEEECC-CCCcCCCcCHHHHhcccchhhhhHhhhhHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 67899999999999999999999998 78999999999872 1111 1111 11233456677889999999999
Q ss_pred cccccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccC
Q 030339 73 DGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVP 152 (179)
Q Consensus 73 ~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~ 152 (179)
||+|+|||++|+++||+||++++++|++||.++|++|++++++++++++|.+++++++++|++++++||+++||||++++
T Consensus 110 ~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~ 189 (262)
T PRK07509 110 EGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVRKDVARELTYTARVFSAEEALELGLVTHVSD 189 (262)
T ss_pred CCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCChhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred CChHHHHHHHHHHHHhccCHHHHHhhC
Q 030339 153 AGQAQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 153 ~~~~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
++.+++.+++++++++||.++..+|
T Consensus 190 --~~~~~a~~~a~~l~~~~~~~~~~~K 214 (262)
T PRK07509 190 --DPLAAALALAREIAQRSPDAIAAAK 214 (262)
T ss_pred --hHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4678999999999999999998876
|
|
| >PRK06213 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-43 Score=268.78 Aligned_cols=176 Identities=20% Similarity=0.269 Sum_probs=160.1
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchh
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G 80 (179)
|+.+|.+++++++ +++++||++|. +++||+|.|++++.........+...+.+++.++.++|||+||+|||+|+|+|
T Consensus 30 ~~~~l~~~l~~~~--~~~~vvvl~g~-g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG 106 (229)
T PRK06213 30 MIDALNAALDQAE--DDRAVVVITGQ-PGIFSGGFDLKVMTSGAQAAIALLTAGSTLARRLLSHPKPVIVACTGHAIAKG 106 (229)
T ss_pred HHHHHHHHHHHhh--ccCcEEEEeCC-CCceEcCcCHHHHhcchHhHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeHHH
Confidence 5789999999988 56799999998 79999999999873223334455566778889999999999999999999999
Q ss_pred HHHHhhcCEEEEcCC-ceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 81 LEMALACDLRICGEA-ALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 81 ~~l~~~~D~~va~~~-a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
++|+++||+||++++ ++|++||+++|++|+.++..++++++|...+++++++|++++++||+++||||+|++++++.++
T Consensus 107 ~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~ 186 (229)
T PRK06213 107 AFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPSAFQRAVINAEMFDPEEAVAAGFLDEVVPPEQLLAR 186 (229)
T ss_pred HHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHHHHHHHHHcCcccCHHHHHHCCCceeccChHHHHHH
Confidence 999999999999999 9999999999998887788889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030339 160 ALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 160 a~~~a~~~~~~~~~a~~~~K 179 (179)
+.++++++++.|+.+++.+|
T Consensus 187 a~~~a~~la~~~~~a~~~~K 206 (229)
T PRK06213 187 AQAAARELAGLNMGAHAATK 206 (229)
T ss_pred HHHHHHHHhcCCHHHHHHHH
Confidence 99999999999999999887
|
|
| >PRK08788 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=274.55 Aligned_cols=170 Identities=26% Similarity=0.444 Sum_probs=148.3
Q ss_pred CHHHHHHHHHHhhc-----CCCceEEEEEeCCCCccccccCcccccc---Cch--hHHHHHHHHHHHHHHHh---cCCCc
Q 030339 1 MLRGLKHAFETISE-----DSSANVVMIRSSVPKVFCAGADLKVLQM---SPS--EIHFYVNTLRSTFSFLE---ALPIP 67 (179)
Q Consensus 1 m~~~l~~~l~~~~~-----d~~v~~vvl~g~~~~~F~~G~D~~~~~~---~~~--~~~~~~~~~~~~~~~~~---~~~kp 67 (179)
|+.+|.+++++++. |+++++|||||.+++.||+|.|+.++.. ..+ ....+...+...+.++. .+|||
T Consensus 44 ~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pkP 123 (287)
T PRK08788 44 LLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGDRDALLAYARACVDGVHAFHRGFGAGAI 123 (287)
T ss_pred HHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 67899999999998 8999999999986789999999988621 111 11122222233333333 79999
Q ss_pred EEEEEcccccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCcc
Q 030339 68 TIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLV 147 (179)
Q Consensus 68 ~ia~v~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv 147 (179)
|||+|||+|+|||++|+++||+||++++++|++||+++|++|++++++++++++|+.++++++++|++++++||+++|||
T Consensus 124 vIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~~l~~~vG~~~A~ellltG~~l~A~eA~~~GLV 203 (287)
T PRK08788 124 SIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLARRVGPKLAEELILSGKLYTAEELHDMGLV 203 (287)
T ss_pred EEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCChHHHHHHHHHHHHhcc
Q 030339 148 NYYVPAGQAQLKALEIAQEINQK 170 (179)
Q Consensus 148 ~~v~~~~~~~~~a~~~a~~~~~~ 170 (179)
|+++|++++.+++.+++++++++
T Consensus 204 ~~vv~~~el~~~a~~~a~~ia~~ 226 (287)
T PRK08788 204 DVLVEDGQGEAAVRTFIRKSKRK 226 (287)
T ss_pred cEecCchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999976
|
|
| >PRK08321 naphthoate synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=274.33 Aligned_cols=179 Identities=28% Similarity=0.450 Sum_probs=157.2
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCC------CccccccCcccccc--------Cc-h--hHHHHH-HHHHHHHHHHh
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVP------KVFCAGADLKVLQM--------SP-S--EIHFYV-NTLRSTFSFLE 62 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~------~~F~~G~D~~~~~~--------~~-~--~~~~~~-~~~~~~~~~~~ 62 (179)
|+.+|.+++++++.|+++++|||||.|+ +.||+|.|+.++.. .. . ...... ....++.+.+.
T Consensus 53 ~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 132 (302)
T PRK08321 53 TVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGYQYAEGDEADTVDPARAGRLHILEVQRLIR 132 (302)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccccccccccccccchhhhHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999842 69999999986510 00 0 000110 11234667788
Q ss_pred cCCCcEEEEEcccccchhHHHHhhcCEEEEc-CCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHH
Q 030339 63 ALPIPTIAVIDGAALGGGLEMALACDLRICG-EAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 141 (179)
Q Consensus 63 ~~~kp~ia~v~G~a~g~G~~l~~~~D~~va~-~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a 141 (179)
++||||||+|||+|+|||++|+++||+||++ ++++|++||+++|++|++++++++++++|..++++++++|++++|+||
T Consensus 133 ~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~~~~~L~r~vG~~~A~~l~ltG~~~~A~eA 212 (302)
T PRK08321 133 FMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYSAEEA 212 (302)
T ss_pred cCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCCchHHHHHHHHhCHHHHHHHHHcCCccCHHHH
Confidence 9999999999999999999999999999999 689999999999999999999999999999999999999999999999
Q ss_pred HhcCccccccCCChHHHHHHHHHHHHhccCHHHHHhhC
Q 030339 142 MSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 142 ~~~Glv~~v~~~~~~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+++||||++++++++.+++.++++++++.+|.+++++|
T Consensus 213 ~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K 250 (302)
T PRK08321 213 HDMGAVNAVVPHAELETEALEWAREINGKSPTAMRMLK 250 (302)
T ss_pred HHCCCceEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999999999886
|
|
| >PRK07854 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-42 Score=266.09 Aligned_cols=169 Identities=28% Similarity=0.451 Sum_probs=152.5
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchh
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G 80 (179)
|+.+|.+++++++.+ ++|+|||||. |+.||+|.|+++.. ....+...+.++++++.++|||+||+|||+|+|+|
T Consensus 28 ~~~~l~~al~~~~~~-~vr~vvl~g~-g~~F~aG~Dl~~~~----~~~~~~~~~~~~~~~l~~~~kP~Iaav~G~a~GgG 101 (243)
T PRK07854 28 LCEELREAVRKAVDE-SARAIVLTGQ-GTVFCAGADLSGDV----YADDFPDALIEMLHAIDAAPVPVIAAINGPAIGAG 101 (243)
T ss_pred HHHHHHHHHHHHhcC-CceEEEEECC-CCceecccCCccch----hHHHHHHHHHHHHHHHHhCCCCEEEEecCcccccH
Confidence 578999999999865 9999999998 78999999997531 12233445567888899999999999999999999
Q ss_pred HHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHHH
Q 030339 81 LEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKA 160 (179)
Q Consensus 81 ~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~a 160 (179)
++|+++||++|++++++|++||+++|++|++++++++++++|+.++++++++|++++++||+++||||+|++ +. ++
T Consensus 102 ~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~---~~-~a 177 (243)
T PRK07854 102 LQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAMLLGAEKLTAEQALATGMANRIGT---LA-DA 177 (243)
T ss_pred HHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCcccccC---HH-HH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999964 33 89
Q ss_pred HHHHHHHhccCHHHHHhhC
Q 030339 161 LEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 161 ~~~a~~~~~~~~~a~~~~K 179 (179)
.+++++++++||.+++.+|
T Consensus 178 ~~~a~~l~~~~~~a~~~~K 196 (243)
T PRK07854 178 QAWAAEIAGLAPLALQHAK 196 (243)
T ss_pred HHHHHHHHhCCHHHHHHHH
Confidence 9999999999999998876
|
|
| >PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=279.78 Aligned_cols=178 Identities=26% Similarity=0.515 Sum_probs=158.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccC--c-hh-HHHHHHHHHHHHHHHhcCCCcEEEEEccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMS--P-SE-IHFYVNTLRSTFSFLEALPIPTIAVIDGA 75 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~--~-~~-~~~~~~~~~~~~~~~~~~~kp~ia~v~G~ 75 (179)
|+.+|.++++.++.||++|+|||||.+++.||+|.|+.++ ... . .. ...+.....+++.++.++|||+||+|||+
T Consensus 31 m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaVnG~ 110 (342)
T PRK05617 31 MIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAADRFFREEYRLNALIARYPKPYIALMDGI 110 (342)
T ss_pred HHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhHHHHHHHHHHHHHHHHhCCCCEEEEEcCE
Confidence 6789999999999999999999999955899999999887 211 1 11 11333444567888999999999999999
Q ss_pred ccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCCh
Q 030339 76 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 155 (179)
Q Consensus 76 a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~ 155 (179)
|+|||++|+++||+||++++++|++||+++|++|++|++++++++.| ..+++++++|++++|+||+++||||+++++++
T Consensus 111 a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g-~~a~~llltG~~i~A~eA~~~GLv~~vv~~~~ 189 (342)
T PRK05617 111 VMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPG-ALGTYLALTGARISAADALYAGLADHFVPSAD 189 (342)
T ss_pred EEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhccc-HHHHHHHHcCCCCCHHHHHHcCCcceecCHHH
Confidence 99999999999999999999999999999999999999999999866 78999999999999999999999999999888
Q ss_pred HHHH--------------------------------------------------------------HHHHHHHHhccCHH
Q 030339 156 AQLK--------------------------------------------------------------ALEIAQEINQKVQS 173 (179)
Q Consensus 156 ~~~~--------------------------------------------------------------a~~~a~~~~~~~~~ 173 (179)
+.++ +.+++++++++||.
T Consensus 190 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~a~~~a~~i~~~sp~ 269 (342)
T PRK05617 190 LPALLDALISLRWDSGADVVDAALAAFATPAPASELAAQRAWIDECFAGDTVEDIIAALEADGGEFAAKTADTLRSRSPT 269 (342)
T ss_pred HHHHHHHHHhcCCccchhHHHHHHHHhccCCCcchhHHHHHHHHHHhCCCCHHHHHHHHHhccHHHHHHHHHHHHhCCcH
Confidence 8776 88999999999999
Q ss_pred HHHhhC
Q 030339 174 VFRILL 179 (179)
Q Consensus 174 a~~~~K 179 (179)
+++.+|
T Consensus 270 a~~~~k 275 (342)
T PRK05617 270 SLKVTL 275 (342)
T ss_pred HHHHHH
Confidence 999876
|
|
| >PRK08290 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-42 Score=272.09 Aligned_cols=176 Identities=30% Similarity=0.443 Sum_probs=155.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccc--cC------------------ch---hHHHHHHHHHHH
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ--MS------------------PS---EIHFYVNTLRST 57 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~--~~------------------~~---~~~~~~~~~~~~ 57 (179)
|+++|.+++++++.|+++++|||||. +++||+|.|+.++. .. .. ........+.++
T Consensus 32 ~~~eL~~~l~~~~~d~~vrvvVltg~-G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (288)
T PRK08290 32 MLYELDAAFRRAEADDAVRVIVLAGA-GKHFSAGHDLGSGTPGRDRDPGPDQHPTLWWDGATKPGVEQRYAREWEVYLGM 110 (288)
T ss_pred HHHHHHHHHHHHhcCCCeeEEEEECC-CCccccCCCccccccccccccccccccccccccccccchhhHHHHHHHHHHHH
Confidence 67899999999999999999999998 78999999998761 11 00 011112344567
Q ss_pred HHHHhcCCCcEEEEEcccccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcC
Q 030339 58 FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVS 137 (179)
Q Consensus 58 ~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~ 137 (179)
+..+.++|||+||+|||+|+|+|++|+++||+||++++++|++||.++|++ + ..++++++++|+.++++++++|++++
T Consensus 111 ~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~lGl~-~-~~~~~l~~~iG~~~A~~llltG~~i~ 188 (288)
T PRK08290 111 CRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMGIP-G-VEYFAHPWELGPRKAKELLFTGDRLT 188 (288)
T ss_pred HHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCcccccCcC-c-chHHHHHHHhhHHHHHHHHHcCCCCC
Confidence 788999999999999999999999999999999999999999999999984 3 34667888999999999999999999
Q ss_pred HHHHHhcCccccccCCChHHHHHHHHHHHHhccCHHHHHhhC
Q 030339 138 GKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 138 a~~a~~~Glv~~v~~~~~~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
|+||+++||||++++++++.+++.++++++++.|+.+++.+|
T Consensus 189 A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K 230 (288)
T PRK08290 189 ADEAHRLGMVNRVVPRDELEAETLELARRIAAMPPFGLRLTK 230 (288)
T ss_pred HHHHHHCCCccEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999999999999999999999998876
|
|
| >PRK06072 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-42 Score=266.59 Aligned_cols=172 Identities=19% Similarity=0.252 Sum_probs=154.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchh
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G 80 (179)
|+++|.+++++++.|+++|+|||+|. ++.||+|.|++++... ....+.+.+..++..+.++||||||+|||+|+|+|
T Consensus 28 ~~~~l~~a~~~~~~d~~vr~vVl~g~-g~~F~aG~Dl~~~~~~--~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG 104 (248)
T PRK06072 28 MRNEFISKLKQINADPKIRVVIVTGE-GRAFCVGADLSEFAPD--FAIDLRETFYPIIREIRFSDKIYISAINGVTAGAC 104 (248)
T ss_pred HHHHHHHHHHHHhcCCCeeEEEEECC-CCCcccCcCHHHHhhh--hHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHH
Confidence 67899999999999999999999998 7899999999876211 11223344567788899999999999999999999
Q ss_pred HHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHHH
Q 030339 81 LEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKA 160 (179)
Q Consensus 81 ~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~a 160 (179)
++|+++||+||++++++|++||.++|++|+.++++++++++|. ++++++++|++++|+||+++||||++ +++.+++
T Consensus 105 ~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~-~a~~lll~g~~~~a~eA~~~Glv~~~---~~~~~~a 180 (248)
T PRK06072 105 IGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQ-RFYEILVLGGEFTAEEAERWGLLKIS---EDPLSDA 180 (248)
T ss_pred HHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhhH-HHHHHHHhCCccCHHHHHHCCCcccc---chHHHHH
Confidence 9999999999999999999999999999999999999999996 89999999999999999999999964 4678899
Q ss_pred HHHHHHHhccCHHHHHhhC
Q 030339 161 LEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 161 ~~~a~~~~~~~~~a~~~~K 179 (179)
.++++++++.||.+++.+|
T Consensus 181 ~~~a~~la~~~~~a~~~~K 199 (248)
T PRK06072 181 EEMANRISNGPFQSYIAAK 199 (248)
T ss_pred HHHHHHHHhCCHHHHHHHH
Confidence 9999999999999998876
|
|
| >PRK07827 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-42 Score=268.90 Aligned_cols=175 Identities=23% Similarity=0.381 Sum_probs=157.2
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-cc--Cch-hHHHHHHHHHHHHHHHhcCCCcEEEEEcccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QM--SPS-EIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 76 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~--~~~-~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a 76 (179)
|+.+|.+++++++.|+++++|||||. |+.||+|.|++++ .. ++. ....+...+.++++++.++||||||+|||+|
T Consensus 34 ~~~el~~~l~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 112 (260)
T PRK07827 34 LVAQLHDGLRAAAADPAVRAVVLTHT-GGTFCAGADLSEAGGGGGDPYDAAVARAREMTALLRAIVELPKPVIAAIDGHV 112 (260)
T ss_pred HHHHHHHHHHHHhcCCCeeEEEEEcC-CCCccCCcChHHHhhcccCchhHHHHHHHHHHHHHHHHHhCCCCEEEEEcCee
Confidence 67899999999999999999999998 7899999999987 21 221 1223455667788899999999999999999
Q ss_pred cchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChH
Q 030339 77 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 156 (179)
Q Consensus 77 ~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~ 156 (179)
+|||++++++||+||++++++|++||.++|++|+++++++++++. ..++++++++|++++++||+++||||++++ ++
T Consensus 113 ~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~-~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~--~l 189 (260)
T PRK07827 113 RAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLS-PRAAARYYLTGEKFGAAEAARIGLVTAAAD--DV 189 (260)
T ss_pred ecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhh-HHHHHHHHHhCCccCHHHHHHcCCcccchH--HH
Confidence 999999999999999999999999999999999999999999864 568999999999999999999999999974 58
Q ss_pred HHHHHHHHHHHhccCHHHHHhhC
Q 030339 157 QLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 157 ~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
.+++.++++++++.|+.+++.+|
T Consensus 190 ~~~a~~~a~~la~~~~~a~~~~K 212 (260)
T PRK07827 190 DAAVAALLADLRRGSPQGLAESK 212 (260)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHH
Confidence 89999999999999999999887
|
|
| >PRK08272 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=272.18 Aligned_cols=175 Identities=25% Similarity=0.369 Sum_probs=153.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCc-----h------------------h--HHHHHHHH
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSP-----S------------------E--IHFYVNTL 54 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~-----~------------------~--~~~~~~~~ 54 (179)
|+.+|.+++++++.|+++++|||+|. |++||+|.|+.++ .... . . .......+
T Consensus 38 m~~eL~~al~~~~~d~~vrvvVl~G~-G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (302)
T PRK08272 38 TPLELRAAVERADLDPGVHVILVSGA-GKGFCAGYDLSAYAEGSSSGGGGGAYPGKRQAVNHLPDDPWDPMIDYQMMSRF 116 (302)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEEcC-CCCcccCcCHHHHhhcccccccccccccccccccccccccccchhhHHHHHHH
Confidence 67899999999999999999999998 7999999999887 1110 0 0 01224455
Q ss_pred HHHHHHHhcCCCcEEEEEcccccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCC
Q 030339 55 RSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGR 134 (179)
Q Consensus 55 ~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~ 134 (179)
.+++..+.++|||+||+|||+|+|||++|+++||++|++++++|++||+++|.+|+. ..+++++|.+++++++++|+
T Consensus 117 ~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~~~gg~~~~---~~~~~~vG~~~A~~llltG~ 193 (302)
T PRK08272 117 VRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPTRVWGVPAT---GMWAYRLGPQRAKRLLFTGD 193 (302)
T ss_pred HHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcchhcccCChH---HHHHHHhhHHHHHHHHHcCC
Confidence 677888999999999999999999999999999999999999999999997555543 35677899999999999999
Q ss_pred CcCHHHHHhcCccccccCCChHHHHHHHHHHHHhccCHHHHHhhC
Q 030339 135 KVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 135 ~~~a~~a~~~Glv~~v~~~~~~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+++|+||+++||||+++|++++.+++.+++++++++||.++..+|
T Consensus 194 ~i~a~eA~~~GLv~~vv~~~~l~~~a~~la~~ia~~~~~a~~~~K 238 (302)
T PRK08272 194 CITGAQAAEWGLAVEAVPPEELDERTERLVERIAAVPVNQLAMVK 238 (302)
T ss_pred ccCHHHHHHcCCCceecCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999887
|
|
| >TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=271.63 Aligned_cols=178 Identities=24% Similarity=0.328 Sum_probs=158.1
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccccc----CchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQM----SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 76 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a 76 (179)
|+.+|.++++.++.|+++++|||||.++++||+|.|++++.. .+.....+.+.+++++..+..+||||||+|||+|
T Consensus 56 ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pKPVIAAVnG~A 135 (360)
T TIGR03200 56 MVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMVSAILGCDKPVICRVNGMR 135 (360)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEe
Confidence 688999999999999999999999994479999999998721 2233344555567788899999999999999999
Q ss_pred cchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChH
Q 030339 77 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 156 (179)
Q Consensus 77 ~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~ 156 (179)
+|+|++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+|+|+.++
T Consensus 136 iGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe~~sA~EA~~~GLVd~VVp~~~~ 215 (360)
T TIGR03200 136 IGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWSAHKAKRLGIIMDVVPALKV 215 (360)
T ss_pred eeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCCcCcHHHHHHcCChheecCchhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred ------------HHHHHHHHHHHhccCHH--HHHhh
Q 030339 157 ------------QLKALEIAQEINQKVQS--VFRIL 178 (179)
Q Consensus 157 ------------~~~a~~~a~~~~~~~~~--a~~~~ 178 (179)
.+.+.++++.+..+++. ++++.
T Consensus 216 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 251 (360)
T TIGR03200 216 DGKFVANPLVVTDRYLDEFGRIVHGEFKAGDELKAG 251 (360)
T ss_pred CcchhcCcccchHHHHHHHhHHhcCCCcchhHHHHH
Confidence 67778888888877766 55543
|
Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=278.09 Aligned_cols=176 Identities=26% Similarity=0.476 Sum_probs=156.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccC----chhHHHHHHHHHHHHHHHhcCCCcEEEEEccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMS----PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGA 75 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~ 75 (179)
|+.+|.++++.++.|+++++|||+|. |++||+|.|+.++ ... ......+....+.+...|.++|||+||+|||+
T Consensus 65 m~~~L~~al~~~~~D~~vrvVVl~G~-GkaFcAGgDl~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pkPvIA~v~G~ 143 (401)
T PLN02157 65 MGYRLQKLYKNWEEDPNIGFVMMKGS-GRAFCAGGDIVSLYHLRKRGSPDAIREFFSSLYSFIYLLGTYLKPHVAILNGV 143 (401)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEEECC-CCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEEeCe
Confidence 68899999999999999999999999 6899999999987 211 11123344444456778999999999999999
Q ss_pred ccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCCh
Q 030339 76 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 155 (179)
Q Consensus 76 a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~ 155 (179)
|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|. .+++|++||++++|+||+++||||+++|+++
T Consensus 144 a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~-~a~~L~LTG~~i~A~eA~~~GLv~~vVp~~~ 222 (401)
T PLN02157 144 TMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGR-LGEYLGLTGLKLSGAEMLACGLATHYIRSEE 222 (401)
T ss_pred EeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhhH-HHHHHHHcCCcCCHHHHHHcCCceEEeCHhH
Confidence 999999999999999999999999999999999999999999999995 8999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHhccCHHHHHhhC
Q 030339 156 AQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 156 ~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+ +++.+++++++..+|.++..+|
T Consensus 223 l-~~~~~~~~~i~~~~p~av~~~k 245 (401)
T PLN02157 223 I-PVMEEQLKKLLTDDPSVVESCL 245 (401)
T ss_pred H-HHHHHHHHHHHcCCHHHHHHHH
Confidence 8 6788999999999998887765
|
|
| >PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=274.96 Aligned_cols=156 Identities=22% Similarity=0.408 Sum_probs=138.3
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccC--chhHHHHHHHHHHHHHHHhcCCCcEEEEEccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMS--PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 77 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~ 77 (179)
|+.+|.++++.++.|++||+|||+|. |++||+|.|++++ ... .............++..+.++|||+||+|||+|+
T Consensus 39 m~~eL~~al~~~~~d~~vrvvVl~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAaV~G~a~ 117 (379)
T PLN02874 39 VVSLLAEFLEQWEKDDSVELIIIKGA-GRAFSAGGDLKMFYDGRESDDSCLEVVYRMYWLCYHIHTYKKTQVALVHGLVM 117 (379)
T ss_pred HHHHHHHHHHHHhhCCCeEEEEEECC-CCCccCccCHHHHHhhcccchHHHHHHHHHHHHHHHHHhCCCCEEEEecCeEE
Confidence 68899999999999999999999998 6899999999987 211 1222233344445677899999999999999999
Q ss_pred chhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHH
Q 030339 78 GGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 157 (179)
Q Consensus 78 g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~ 157 (179)
|||+.|+++||+||++++++|++||.++|++|++|++++++++.|. .+++|+++|++++++||+++||||++++++++.
T Consensus 118 GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g~-~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~ 196 (379)
T PLN02874 118 GGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPGH-LGEYLALTGARLNGKEMVACGLATHFVPSEKLP 196 (379)
T ss_pred ecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhHH-HHHHHHHcCCcccHHHHHHcCCccEEeCHHHHH
Confidence 9999999999999999999999999999999999999999998885 899999999999999999999999999987775
Q ss_pred H
Q 030339 158 L 158 (179)
Q Consensus 158 ~ 158 (179)
+
T Consensus 197 ~ 197 (379)
T PLN02874 197 E 197 (379)
T ss_pred H
Confidence 5
|
|
| >PLN02267 enoyl-CoA hydratase/isomerase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-41 Score=259.22 Aligned_cols=177 Identities=23% Similarity=0.408 Sum_probs=149.7
Q ss_pred CHHHHHHHHHHhhcCCCce-EEEEEeCCCCccccccCccccc-c--CchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccc
Q 030339 1 MLRGLKHAFETISEDSSAN-VVMIRSSVPKVFCAGADLKVLQ-M--SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 76 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~-~vvl~g~~~~~F~~G~D~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a 76 (179)
|+.+|.+++++++.|++++ +||++|. ++.||+|.|++++. . .......+...+.+++.++.++||||||+|||+|
T Consensus 27 ~~~eL~~al~~~~~d~~~~~vVV~~g~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a 105 (239)
T PLN02267 27 LIDSIRSALRQVKSQATPGSVLITTAE-GKFFSNGFDLAWAQAAGSAPSRLHLMVAKLRPLVADLISLPMPTIAAVTGHA 105 (239)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEcCC-CCceeCCcCHHHHhccccCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCcc
Confidence 5789999999999999975 6667777 78999999998762 1 1222233445567788899999999999999999
Q ss_pred cchhHHHHhhcCEEEEcC-CceeecccccccccCCcchhhhhhcccCHHHH-HHHHhcCCCcCHHHHHhcCccccccCC-
Q 030339 77 LGGGLEMALACDLRICGE-AALLGLPETGLAIIPGAGGTQRLPRLVGKSVA-KDIIFTGRKVSGKDAMSLGLVNYYVPA- 153 (179)
Q Consensus 77 ~g~G~~l~~~~D~~va~~-~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a-~~l~l~g~~~~a~~a~~~Glv~~v~~~- 153 (179)
+|||++|+++||+||+++ +++|++||.++|+++++++++++++++|..++ ++++++|++++++||+++||||+++++
T Consensus 106 ~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG~~~a~~~llltG~~~~a~eA~~~Glv~~vv~~~ 185 (239)
T PLN02267 106 SAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGSPAARRDVLLRAAKLTAEEAVEMGIVDSAHDSA 185 (239)
T ss_pred hHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcChHHHHHHHHHcCCcCCHHHHHHCCCcceecCCH
Confidence 999999999999999984 57999999999997444457799999999999 699999999999999999999999985
Q ss_pred ChHHHHHHHHHHHHhccC--HHHHHhh
Q 030339 154 GQAQLKALEIAQEINQKV--QSVFRIL 178 (179)
Q Consensus 154 ~~~~~~a~~~a~~~~~~~--~~a~~~~ 178 (179)
+++.+++.++|+++++++ +.++..+
T Consensus 186 ~~l~~~a~~~A~~ia~~~~~~~~~~~~ 212 (239)
T PLN02267 186 EETVEAAVRLGEELAARKWNGEVYASI 212 (239)
T ss_pred HHHHHHHHHHHHHHhhccCcccHHHHH
Confidence 689999999999999874 3454444
|
|
| >PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-41 Score=261.82 Aligned_cols=173 Identities=22% Similarity=0.316 Sum_probs=150.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-cc-Cchh-HHHHHHHHHHHHHHHhcCCCcEEEEEccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QM-SPSE-IHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 77 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~-~~~~-~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~ 77 (179)
|+.+|.+++++++ +++++|||+|. |++||+|.|++++ .. .... .......+..++.++.++||||||+|||+|+
T Consensus 32 ~~~~L~~~l~~~~--~~vr~vVl~g~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~ 108 (255)
T PRK07112 32 LIAECMDVLDRCE--HAATIVVLEGL-PEVFCFGADFSAIAEKPDAGRADLIDAEPLYDLWHRLATGPYVTIAHVRGKVN 108 (255)
T ss_pred HHHHHHHHHHHhh--cCceEEEEEcC-CCCcccCcCHHHHhhccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEecEEE
Confidence 5789999999998 46999999998 7899999999987 21 1111 1112334456888899999999999999999
Q ss_pred chhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHH
Q 030339 78 GGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 157 (179)
Q Consensus 78 g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~ 157 (179)
|||++|+++||+||++++++|++||+++|++|+++ +.++++++|..++++++++|++++++||+++||||+++++++.
T Consensus 109 GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~-~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~- 186 (255)
T PRK07112 109 AGGIGFVAASDIVIADETAPFSLSELLFGLIPACV-LPFLIRRIGTQKAHYMTLMTQPVTAQQAFSWGLVDAYGANSDT- 186 (255)
T ss_pred cchhHHHHcCCEEEEcCCCEEeCchhhhccCcchh-hHHHHHHhCHHHHHHHHHhCCcccHHHHHHcCCCceecCcHHH-
Confidence 99999999999999999999999999999999865 4678999999999999999999999999999999999986543
Q ss_pred HHHHHHHHHHhccCHHHHHhhC
Q 030339 158 LKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 158 ~~a~~~a~~~~~~~~~a~~~~K 179 (179)
.+.++++++++.+|.+++.+|
T Consensus 187 -~~~~~a~~l~~~~p~a~~~~K 207 (255)
T PRK07112 187 -LLRKHLLRLRCLNKAAVARYK 207 (255)
T ss_pred -HHHHHHHHHHhCCHHHHHHHH
Confidence 578899999999999999877
|
|
| >PRK12478 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-41 Score=266.63 Aligned_cols=174 Identities=22% Similarity=0.291 Sum_probs=148.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccc-ccc-------Cc--hhHHHH---H-H--HHHHHHHHHhcC
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKV-LQM-------SP--SEIHFY---V-N--TLRSTFSFLEAL 64 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~-~~~-------~~--~~~~~~---~-~--~~~~~~~~~~~~ 64 (179)
|+.+|.++|++++.|+++|+|||||. |++||+|.|+++ +.. .. .....+ . . .....+..+.++
T Consensus 33 ~~~eL~~al~~~~~d~~vrvvVLtG~-G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 111 (298)
T PRK12478 33 MPDEIEAAIGLAERDQDIKVIVLRGA-GRAFSGGYDFGGGFQHWGEAMMTDGRWDPGKDFAMVTARETGPTQKFMAIWRA 111 (298)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEECC-CCCcccCcCccccccccchhcccccccCchhhhhhhhhhhcchHHHHHHHHhC
Confidence 67899999999999999999999998 799999999985 210 00 011111 0 1 112356678899
Q ss_pred CCcEEEEEcccccchhHHHHhhcCEEEEcCCceeecccccc-cccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHh
Q 030339 65 PIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGL-AIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMS 143 (179)
Q Consensus 65 ~kp~ia~v~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~-G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~ 143 (179)
|||+||+|||+|+|||++|+++||+||++++++|++||+++ |+++. .++ .+++|..++++++++|++++|+||++
T Consensus 112 ~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~~--~~~--~~~vG~~~A~~llltg~~i~A~eA~~ 187 (298)
T PRK12478 112 SKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYLT--GMW--LYRLSLAKVKWHSLTGRPLTGVQAAE 187 (298)
T ss_pred CCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCch--hHH--HHHhhHHHHHHHHHcCCccCHHHHHH
Confidence 99999999999999999999999999999999999999996 88863 233 24599999999999999999999999
Q ss_pred cCccccccCCChHHHHHHHHHHHHhccCHHHHHhhC
Q 030339 144 LGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 144 ~Glv~~v~~~~~~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+||||+|++++++.+++.+++++++..||.+++.+|
T Consensus 188 ~GLV~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K 223 (298)
T PRK12478 188 AELINEAVPFERLEARVAEVATELARIPLSQLQAQK 223 (298)
T ss_pred cCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999999999999999999887
|
|
| >KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-41 Score=247.42 Aligned_cols=179 Identities=53% Similarity=0.825 Sum_probs=171.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+++|.++++++..|+.+|+|+|++..++.||+|.|+++- .+++.+...++..++.++..+.++|.|+||+++|.+.||
T Consensus 59 ~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~Ev~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGG 138 (291)
T KOG1679|consen 59 FVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSEVTRFVNGLRGLFNDIERLPQPVIAAIDGAALGG 138 (291)
T ss_pred HHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHHHHHHHHHHHHHHHHHHhCCccceehhcchhccc
Confidence 6789999999999999999999999989999999999998 788999999999999999999999999999999999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCC----h
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG----Q 155 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~----~ 155 (179)
|++++++||+|+++++++++++|.+++++|+.|++++|+|.+|.+.++++++|++.+++.||..+||||+|++.. .
T Consensus 139 GLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg~alaKELIftarvl~g~eA~~lGlVnhvv~qneegda 218 (291)
T KOG1679|consen 139 GLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVGVALAKELIFTARVLNGAEAAKLGLVNHVVEQNEEGDA 218 (291)
T ss_pred chhhhhhccceehhhhccccccccceeeecCCCccchhHHHHhHHHHHhHhhhheeccchhHHhcchHHHHHhcCccccH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999754 5
Q ss_pred HHHHHHHHHHHHhccCHHHHHhhC
Q 030339 156 AQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 156 ~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
..+.++++|+++.-+-|.++++.|
T Consensus 219 a~~kal~lA~eilp~gPiavr~aK 242 (291)
T KOG1679|consen 219 AYQKALELAREILPQGPIAVRLAK 242 (291)
T ss_pred HHHHHHHHHHHhccCCchhhhHHH
Confidence 667799999999999999999876
|
|
| >PLN02988 3-hydroxyisobutyryl-CoA hydrolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=268.96 Aligned_cols=175 Identities=21% Similarity=0.421 Sum_probs=152.3
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccc-c-Cc---hhHHHHHHHHHHHHHHHhcCCCcEEEEEccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-M-SP---SEIHFYVNTLRSTFSFLEALPIPTIAVIDGA 75 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~-~-~~---~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~ 75 (179)
|+.+|.++|++++.|+++++|||+|. |++||+|.|+.++. . .. .....+......+...+.++|||+||++||+
T Consensus 37 m~~~L~~al~~~~~d~~v~~VVl~G~-G~~FcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~~i~~~pKPvIa~v~G~ 115 (381)
T PLN02988 37 MISRLLQLFLAFEEDPSVKLVILKGH-GRAFCAGGDVAAVVRDIEQGNWRLGANFFSDEYMLNYVMATYSKAQVSILNGI 115 (381)
T ss_pred HHHHHHHHHHHHHhCCCeeEEEEECC-CCCcccCcCHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHCCCCEEEEecCe
Confidence 68899999999999999999999999 68999999999872 1 11 1122223333345678899999999999999
Q ss_pred ccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCCh
Q 030339 76 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 155 (179)
Q Consensus 76 a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~ 155 (179)
|+|||++|+++||+||++++++|++||+++|++|+.|++++|+++.|. .+++|+++|+++++.||+++||+|+++++++
T Consensus 116 a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~-~~~~l~LTG~~i~a~eA~~~GLv~~vv~~~~ 194 (381)
T PLN02988 116 VMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGF-FGEYVGLTGARLDGAEMLACGLATHFVPSTR 194 (381)
T ss_pred EeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHH-HHHHHHHcCCCCCHHHHHHcCCceEecCHhH
Confidence 999999999999999999999999999999999999999999998886 6899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCHHHHHhh
Q 030339 156 AQLKALEIAQEINQKVQSVFRIL 178 (179)
Q Consensus 156 ~~~~a~~~a~~~~~~~~~a~~~~ 178 (179)
+.+.+.+++ +++..+|.++...
T Consensus 195 l~~~~~~la-~~~~~~p~~~~~~ 216 (381)
T PLN02988 195 LTALEADLC-RIGSNDPTFASTI 216 (381)
T ss_pred HHHHHHHHH-HhhccCHHHHHHH
Confidence 998888888 7777777766544
|
|
| >PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-40 Score=277.55 Aligned_cols=178 Identities=20% Similarity=0.189 Sum_probs=157.7
Q ss_pred CHHHHHHHHHHhhc-CCCceEEEEEeCCC-CccccccCcccccc-CchhHHHHHHHHHHHHHHHhcCCCcEEEEEc-ccc
Q 030339 1 MLRGLKHAFETISE-DSSANVVMIRSSVP-KVFCAGADLKVLQM-SPSEIHFYVNTLRSTFSFLEALPIPTIAVID-GAA 76 (179)
Q Consensus 1 m~~~l~~~l~~~~~-d~~v~~vvl~g~~~-~~F~~G~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~-G~a 76 (179)
|+.+|.+++++++. |+++|+|||||. | +.||+|.|++.... +..........++.++.++.++|||+||+|| |+|
T Consensus 303 ~~~eL~~al~~~~~~d~~vr~vVltg~-G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a 381 (550)
T PRK08184 303 MARELDDAILHLRTNELDIGTWVLKTE-GDAAAVLAADATLLAHKDHWLVRETRGYLRRTLKRLDVTSRSLFALIEPGSC 381 (550)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEEcC-CCCcEEeCCChhhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCce
Confidence 67899999999986 799999999998 5 59999999864321 1111122334455678899999999999997 999
Q ss_pred cchh-HHHHhhcCEEEEc-------CCceeecccccccccCCcchhhhhhcc-cCHHHHHHH--HhcCCCcCHHHHHhcC
Q 030339 77 LGGG-LEMALACDLRICG-------EAALLGLPETGLAIIPGAGGTQRLPRL-VGKSVAKDI--IFTGRKVSGKDAMSLG 145 (179)
Q Consensus 77 ~g~G-~~l~~~~D~~va~-------~~a~~~~p~~~~G~~p~~~~~~~l~~~-~g~~~a~~l--~l~g~~~~a~~a~~~G 145 (179)
+||| ++|+++||++|++ ++++|++||+++|++|+++++++|+++ +|..+++++ +++|++++|+||+++|
T Consensus 382 ~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~pe~~~Gl~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~G 461 (550)
T PRK08184 382 FAGTLAELALAADRSYMLALPDDNDPAPAITLSALNFGLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADAAEELG 461 (550)
T ss_pred ehhHHHHHHHHCChhhhcCCCCCCCCCCEEECccccccCCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHHHHHcC
Confidence 9999 9999999999999 999999999999999999999999988 699999987 5899999999999999
Q ss_pred ccccccCCChHHHHHHHHHHHHhccCHHHHHhhC
Q 030339 146 LVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 146 lv~~v~~~~~~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
|||+++|++++++++.+++++++++||.+++.+|
T Consensus 462 Lv~~vv~~~~l~~~a~~~a~~ia~~~p~a~~~~K 495 (550)
T PRK08184 462 LVTAAPDDIDWEDEVRIALEERASLSPDALTGME 495 (550)
T ss_pred CcccccChHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999999999999999999887
|
|
| >TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=275.27 Aligned_cols=178 Identities=18% Similarity=0.175 Sum_probs=158.0
Q ss_pred CHHHHHHHHHHhh-cCCCceEEEEEeCCCCc-cccccCcccccc-CchhHHHHHHHHHHHHHHHhcCCCcEEEEE-cccc
Q 030339 1 MLRGLKHAFETIS-EDSSANVVMIRSSVPKV-FCAGADLKVLQM-SPSEIHFYVNTLRSTFSFLEALPIPTIAVI-DGAA 76 (179)
Q Consensus 1 m~~~l~~~l~~~~-~d~~v~~vvl~g~~~~~-F~~G~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v-~G~a 76 (179)
|+.+|.+++.+++ +|+++|+|||||. |+. ||+|.|+..... +...........++++.++.++|||+||+| ||+|
T Consensus 299 ~~~~L~~a~~~~~~~d~~vr~vVl~g~-G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpviAav~~G~a 377 (546)
T TIGR03222 299 LARELDDAILHLRTNELDIGLWVFRTQ-GDAELVLAADALLEAHKDHWFVRETIGYLRRTLARLDVSSRSLFALIEPGSC 377 (546)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEEEEcC-CCCceecCcCccccccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCCeE
Confidence 6789999999998 4599999999998 666 999999974321 111122333344567889999999999999 8999
Q ss_pred cchh-HHHHhhcCEEEE-------cCCceeecccccccccCCcchhhhhhccc-CHHHH--HHHHhcCCCcCHHHHHhcC
Q 030339 77 LGGG-LEMALACDLRIC-------GEAALLGLPETGLAIIPGAGGTQRLPRLV-GKSVA--KDIIFTGRKVSGKDAMSLG 145 (179)
Q Consensus 77 ~g~G-~~l~~~~D~~va-------~~~a~~~~p~~~~G~~p~~~~~~~l~~~~-g~~~a--~~l~l~g~~~~a~~a~~~G 145 (179)
+||| ++|+++||++|+ +++++|++||+++|++|+++++++|++++ |..++ ++++++|++++|+||+++|
T Consensus 378 ~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~e~~lGl~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~G 457 (546)
T TIGR03222 378 FAGTLAELAFAADRSYMLAFPDNNDPEPAITLSELNFGLYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEEAERLG 457 (546)
T ss_pred eHHHHHHHHHhCceeeecCCCCCCCCCCEEeCCccccccCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHHHHHcC
Confidence 9999 999999999999 89999999999999999999999999998 99888 5599999999999999999
Q ss_pred ccccccCCChHHHHHHHHHHHHhccCHHHHHhhC
Q 030339 146 LVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 146 lv~~v~~~~~~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
||++|++++++.+++.+++++++++||.+++.+|
T Consensus 458 lv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K 491 (546)
T TIGR03222 458 LVTAAPDDIDWEDEIRIALEERASFSPDALTGLE 491 (546)
T ss_pred CcccccCchHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999999999999999999999999999887
|
In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH. |
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=283.30 Aligned_cols=169 Identities=37% Similarity=0.589 Sum_probs=155.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccccc----CchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQM----SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 76 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a 76 (179)
|+.+|.++++.++.|+++|+|||||. +++||+|.|++++.. .......+...++.++.++.++|||+||+|||+|
T Consensus 35 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a 113 (715)
T PRK11730 35 TLASLGEALDALEAQSDLKGLLLTSA-KDAFIVGADITEFLSLFAAPEEELSQWLHFANSIFNRLEDLPVPTVAAINGYA 113 (715)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEECC-CCccccCcCHHHHhhhccCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEECCEe
Confidence 67899999999999999999999998 689999999988721 1222334555667788899999999999999999
Q ss_pred cchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChH
Q 030339 77 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 156 (179)
Q Consensus 77 ~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~ 156 (179)
+|||++|+++||+||++++++|++||+++|++|++|+++++++++|..++++++++|++++|+||+++||||++++++++
T Consensus 114 ~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~~~A~~llltG~~~~A~eA~~~GLv~~vv~~~~l 193 (715)
T PRK11730 114 LGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGADNALEWIAAGKDVRAEDALKVGAVDAVVAPEKL 193 (715)
T ss_pred ehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHCCCCeEecCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcc
Q 030339 157 QLKALEIAQEINQK 170 (179)
Q Consensus 157 ~~~a~~~a~~~~~~ 170 (179)
.+++.+++++++.+
T Consensus 194 ~~~a~~~a~~la~~ 207 (715)
T PRK11730 194 QEAALALLKQAIAG 207 (715)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999999975
|
|
| >PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-39 Score=261.85 Aligned_cols=172 Identities=23% Similarity=0.443 Sum_probs=151.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-cc----CchhHHHHHHHHHHHHHHHhcCCCcEEEEEccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QM----SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGA 75 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~ 75 (179)
|+.+|.++|+.++.|+++++|||+|. |++||+|.|++.+ .. ..+....+....+.+.+.+.++|||+||++||+
T Consensus 70 m~~eL~~al~~~~~D~~vrvVVL~G~-GkaFcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~~i~~~pKPvIA~v~G~ 148 (407)
T PLN02851 70 MVARLKRLYESWEENPDIGFVLMKGS-GRAFCSGADVVSLYHLINEGNVEECKLFFENLYKFVYLQGTYLKPNVAIMDGI 148 (407)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCE
Confidence 78999999999999999999999998 6999999999987 21 113344556667778888999999999999999
Q ss_pred ccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCCh
Q 030339 76 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 155 (179)
Q Consensus 76 a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~ 155 (179)
|+|||+.|+++||+||++++++|++||.++|++|++|++++++++.|. .++++++||++++++||+++||+|+++++++
T Consensus 149 amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~-~g~~L~LTG~~i~a~eA~~~GLa~~~v~~~~ 227 (407)
T PLN02851 149 TMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGY-LGEYLALTGQKLNGVEMIACGLATHYCLNAR 227 (407)
T ss_pred EeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCH-HHHHHHHhCCcCCHHHHHHCCCceeecCHhh
Confidence 999999999999999999999999999999999999999999999887 5899999999999999999999999999888
Q ss_pred HHHHHHHHHHHHhccCHHHH
Q 030339 156 AQLKALEIAQEINQKVQSVF 175 (179)
Q Consensus 156 ~~~~a~~~a~~~~~~~~~a~ 175 (179)
+ +++.+.+.++...++.++
T Consensus 228 l-~~l~~~l~~~~~~~~~~~ 246 (407)
T PLN02851 228 L-PLIEERLGKLLTDDPAVI 246 (407)
T ss_pred H-HHHHHHHHhhccCCHHHH
Confidence 7 667777777766555443
|
|
| >KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=247.22 Aligned_cols=178 Identities=29% Similarity=0.565 Sum_probs=164.5
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccc------cC-------chhHHHHHHHHHHHHHHHhcCCCc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ------MS-------PSEIHFYVNTLRSTFSFLEALPIP 67 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~------~~-------~~~~~~~~~~~~~~~~~~~~~~kp 67 (179)
|+.|+.++++.++.||++|+|||+|+ |+.||+|+|++.+. .. .....+.+..+++.+..|.+||||
T Consensus 50 ~w~E~~~cf~~l~~dpdcr~iilsg~-GKhFcaGIDl~~~~~~~~~~~~~dd~aR~g~~lrr~Ik~~Q~~~t~ie~CpKP 128 (292)
T KOG1681|consen 50 FWREFKECFDSLDRDPDCRAIILSGA-GKHFCAGIDLNDMASDRILQPEGDDVARKGRSLRRIIKRYQDTFTAIERCPKP 128 (292)
T ss_pred HHHHHHHHHHhhccCCCceEEEEecC-CcceecccCcchhhhhhccccccchHhhhhHHHHHHHHHHHHHHHHHHhCChh
Confidence 57899999999999999999999999 89999999988761 11 134667788889999999999999
Q ss_pred EEEEEcccccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccC-HHHHHHHHhcCCCcCHHHHHhcCc
Q 030339 68 TIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVG-KSVAKDIIFTGRKVSGKDAMSLGL 146 (179)
Q Consensus 68 ~ia~v~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g-~~~a~~l~l~g~~~~a~~a~~~Gl 146 (179)
+|++|+|+|+|+|..|..+||+|++++|+.|+.-|+.+|+..+.|-..+||+.+| ++.++++.+|++.++|.||++.||
T Consensus 129 VIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGTL~RlpkvVGn~s~~~elafTar~f~a~EAl~~GL 208 (292)
T KOG1681|consen 129 VIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGTLNRLPKVVGNQSLARELAFTARKFSADEALDSGL 208 (292)
T ss_pred HHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhhHhhhhHHhcchHHHHHHHhhhhhcchhhhhhcCc
Confidence 9999999999999999999999999999999999999999999999999999999 899999999999999999999999
Q ss_pred cccccC-CChHHHHHHHHHHHHhccCHHHHHhhC
Q 030339 147 VNYYVP-AGQAQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 147 v~~v~~-~~~~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
|++|+| .+++...+..+|+.|+.++|.+...+|
T Consensus 209 vSrvf~dk~~ll~~~l~mA~~Ia~KSpvaVqgTK 242 (292)
T KOG1681|consen 209 VSRVFPDKEELLNGALPMAELIASKSPVAVQGTK 242 (292)
T ss_pred chhhcCCHHHHHhhhHHHHHHhccCCceeeechH
Confidence 999998 578999999999999999998877665
|
|
| >cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=239.99 Aligned_cols=165 Identities=47% Similarity=0.813 Sum_probs=154.1
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCch--hHHHHHHHHHHHHHHHhcCCCcEEEEEccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPS--EIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 77 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~ 77 (179)
|+++|.++++.++.|+++++|||||. ++.||+|.|+.++ ....+ ....+.+.+++++.++..+|||+|+++||+|.
T Consensus 27 ~~~~l~~~l~~~~~d~~~~~vvl~~~-~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~Ia~v~G~a~ 105 (195)
T cd06558 27 MLDELAAALDEAEADPDVRVVVLTGA-GKAFCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAVNGAAL 105 (195)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCceEeCcCHHHHhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCeee
Confidence 57899999999999999999999998 8999999999988 22222 25678888899999999999999999999999
Q ss_pred chhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHH
Q 030339 78 GGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 157 (179)
Q Consensus 78 g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~ 157 (179)
|+|+.++++||+||++++++|++||.++|++|+.+.++++++++|.+.+++++++|++++++||+++|||+++++.+++.
T Consensus 106 g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~l~g~~~~a~ea~~~Glv~~~~~~~~l~ 185 (195)
T cd06558 106 GGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELLLTGRRISAEEALELGLVDEVVPDEELL 185 (195)
T ss_pred cHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCeecChhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998999
Q ss_pred HHHHHHHHH
Q 030339 158 LKALEIAQE 166 (179)
Q Consensus 158 ~~a~~~a~~ 166 (179)
+++.+++++
T Consensus 186 ~~a~~~a~~ 194 (195)
T cd06558 186 AAALELARR 194 (195)
T ss_pred HHHHHHHhh
Confidence 999988876
|
This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. |
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=278.88 Aligned_cols=166 Identities=42% Similarity=0.727 Sum_probs=150.8
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-cc-CchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QM-SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 78 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g 78 (179)
|+.+|.+++++++.|+++|+|||+|.++++||+|.|++++ .. ..+....+....++++.++.++|||+||+|||+|+|
T Consensus 35 ~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~G 114 (708)
T PRK11154 35 FAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEALARQGQQLFAEIEALPIPVVAAIHGACLG 114 (708)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeec
Confidence 5789999999999999999999999766899999999987 22 122233444556678899999999999999999999
Q ss_pred hhHHHHhhcCEEEEcCCc--eeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChH
Q 030339 79 GGLEMALACDLRICGEAA--LLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 156 (179)
Q Consensus 79 ~G~~l~~~~D~~va~~~a--~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~ 156 (179)
||++|+++||+||+++++ +|++||+++|++|++|++++|++++|..++++|+++|++++++||+++||||++++++++
T Consensus 115 gG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l 194 (708)
T PRK11154 115 GGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVDDVVPHSIL 194 (708)
T ss_pred hHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCHHHHHHHHHhCCcCCHHHHHHCCCCcEecChHHH
Confidence 999999999999999974 899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 030339 157 QLKALEIAQE 166 (179)
Q Consensus 157 ~~~a~~~a~~ 166 (179)
.+++.++|++
T Consensus 195 ~~~a~~~A~~ 204 (708)
T PRK11154 195 LEVAVELAKK 204 (708)
T ss_pred HHHHHHHHHh
Confidence 9999999988
|
|
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=274.63 Aligned_cols=176 Identities=40% Similarity=0.657 Sum_probs=155.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccccc--CchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQM--SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 78 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g 78 (179)
|+.+|.++|++++.|+++|+|||++..+++||+|.|++++.. .......+...++.++..+.++||||||+|||+|+|
T Consensus 30 ~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaVnG~a~G 109 (699)
T TIGR02440 30 FADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALAQQGQVLFAELEALPIPVVAAIHGACLG 109 (699)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeec
Confidence 678999999999999999999975433789999999998721 223333445566778889999999999999999999
Q ss_pred hhHHHHhhcCEEEEcCC--ceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChH
Q 030339 79 GGLEMALACDLRICGEA--ALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 156 (179)
Q Consensus 79 ~G~~l~~~~D~~va~~~--a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~ 156 (179)
||++|+++||+||++++ ++|++||+++|++|++|+++++++++|...+++++++|+++++++|+++||||++++++++
T Consensus 110 gG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~~llltG~~~~a~eA~~~GLV~~vv~~~~l 189 (699)
T TIGR02440 110 GGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVDDVVPQSIL 189 (699)
T ss_pred HHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHhCCCCcEecChhHH
Confidence 99999999999999986 7999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-------------HHhccCHHHHH
Q 030339 157 QLKALEIAQ-------------EINQKVQSVFR 176 (179)
Q Consensus 157 ~~~a~~~a~-------------~~~~~~~~a~~ 176 (179)
.+++.++|+ ++++.+|.+.+
T Consensus 190 ~~~a~~~A~~~~~~~~~~~~~~~~~~~~~~a~~ 222 (699)
T TIGR02440 190 LDTAVEMALKGKPIRKPLSLQERLLEGTPLGRA 222 (699)
T ss_pred HHHHHHHHHhCCCCCCCccchhhhcccCchhHH
Confidence 999999998 56666666533
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-38 Score=273.87 Aligned_cols=168 Identities=38% Similarity=0.604 Sum_probs=153.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccccc----CchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQM----SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 76 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a 76 (179)
|+.+|.+++++++.|+++++|||+|. ++.||+|.|++++.. +......+....++++.++.++|||+||+|||+|
T Consensus 35 ~~~eL~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pkPvIAai~G~a 113 (714)
T TIGR02437 35 TLASLDQALDAIKAQSSLKGVILTSG-KDAFIVGADITEFLGLFALPDAELIQWLLFANSIFNKLEDLPVPTVAAINGIA 113 (714)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCccccCcCHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence 57899999999999999999999998 789999999998721 2223334555667889999999999999999999
Q ss_pred cchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChH
Q 030339 77 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 156 (179)
Q Consensus 77 ~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~ 156 (179)
+|||++|+++||+||++++++|++||+++|++|++|+++++++++|...+++++++|+++++++|+++||||++++++++
T Consensus 114 lGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~~~A~~llltG~~~~A~eA~~~GLvd~vv~~~~l 193 (714)
T TIGR02437 114 LGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNALEWIASGKENRAEDALKVGAVDAVVTADKL 193 (714)
T ss_pred ecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCCcEeeChhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc
Q 030339 157 QLKALEIAQEINQ 169 (179)
Q Consensus 157 ~~~a~~~a~~~~~ 169 (179)
.+++.++++++..
T Consensus 194 ~~~a~~~a~~~~~ 206 (714)
T TIGR02437 194 GAAALQLLKDAIN 206 (714)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988554
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=263.05 Aligned_cols=173 Identities=27% Similarity=0.403 Sum_probs=149.5
Q ss_pred CHHHHHHHHHHhh-cCCCceEEEEEeCCCCccccccCcccccc-Cch-h--HHHHH-HHHHHHHHHHhcCCCcEEEEEcc
Q 030339 1 MLRGLKHAFETIS-EDSSANVVMIRSSVPKVFCAGADLKVLQM-SPS-E--IHFYV-NTLRSTFSFLEALPIPTIAVIDG 74 (179)
Q Consensus 1 m~~~l~~~l~~~~-~d~~v~~vvl~g~~~~~F~~G~D~~~~~~-~~~-~--~~~~~-~~~~~~~~~~~~~~kp~ia~v~G 74 (179)
|+.+|.++|++++ .|+++|+|||||.++++||+|.|++++.. ... . ..... +....+.+.+.++||||||+|||
T Consensus 49 ~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG 128 (546)
T TIGR03222 49 VDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNG 128 (546)
T ss_pred HHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHHHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 5789999999999 79999999999975789999999998721 111 1 11111 11233455678999999999999
Q ss_pred cccchhHHHHhhcCEEEEcCC--ceeeccccc-ccccCCcchhhhhh--cccCHHHHHHHHhcCCCcCHHHHHhcCcccc
Q 030339 75 AALGGGLEMALACDLRICGEA--ALLGLPETG-LAIIPGAGGTQRLP--RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNY 149 (179)
Q Consensus 75 ~a~g~G~~l~~~~D~~va~~~--a~~~~p~~~-~G~~p~~~~~~~l~--~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~ 149 (179)
+|+|+|++|+++||+||++++ ++|++||++ +|++|+++++.++. +.+|..++++++++|++++++||+++||||+
T Consensus 129 ~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl~P~~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~ 208 (546)
T TIGR03222 129 TCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDE 208 (546)
T ss_pred EeehHHHHHHHhCCEEEEecCCCcEEEccchhccCcCCccchhhhccccchhCHHHHHHHHHcCCCccHHHHHHcCCceE
Confidence 999999999999999999987 799999997 99999999998887 6899999999999999999999999999999
Q ss_pred ccCCChHHHHHHHHHHHHhccCHH
Q 030339 150 YVPAGQAQLKALEIAQEINQKVQS 173 (179)
Q Consensus 150 v~~~~~~~~~a~~~a~~~~~~~~~ 173 (179)
++|++++.+++.++++++++.||.
T Consensus 209 vv~~~~l~~~a~~lA~~la~~~p~ 232 (546)
T TIGR03222 209 VVKPSQFDAAIAERAAELAAQSDR 232 (546)
T ss_pred EeChHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999998763
|
In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH. |
| >KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-37 Score=232.55 Aligned_cols=178 Identities=20% Similarity=0.376 Sum_probs=161.5
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc----ccCc-h---hHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL----QMSP-S---EIHFYVNTLRSTFSFLEALPIPTIAVI 72 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~----~~~~-~---~~~~~~~~~~~~~~~~~~~~kp~ia~v 72 (179)
|+.++..+|+++..|+++..++++|. |+.||+|.|+..+ +.+. + ....+...+...+..+.++|||+||.|
T Consensus 36 ~y~~i~~al~~a~~dds~~~tv~s~~-G~~f~sG~Df~~~~~~~~~d~~~~~~~~~~~v~~~~~~v~~fi~f~Kplia~v 114 (266)
T KOG0016|consen 36 DYVYIQRALEEANDDDSVSITVLSSN-GSYFCSGLDFSPFAKALDDDANEESDKASKFVKNVSCFVNTFINFPKPLVALV 114 (266)
T ss_pred HHHHHHHHHHHhhcccceEEEEEecC-ccEEeeccccchhhhcCCCcccccchhhHHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 56789999999999999988888888 8999999999988 1111 1 222333444457889999999999999
Q ss_pred cccccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccC
Q 030339 73 DGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVP 152 (179)
Q Consensus 73 ~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~ 152 (179)
||+|+|.|..+.-.||+++++|+++|..|+.++|+.|+++.++++|+++|...|.++++.|++++|+||.+.|||+++++
T Consensus 115 NGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~imG~~~A~E~ll~~~kltA~Ea~~~glVskif~ 194 (266)
T KOG0016|consen 115 NGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPKIMGSASANEMLLFGEKLTAQEACEKGLVSKIFP 194 (266)
T ss_pred cCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeeehHhhchhhHHHHHHhCCcccHHHHHhcCchhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhccCHHHHHhhC
Q 030339 153 AGQAQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 153 ~~~~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
.+++.+++...++++++.+|.+++..|
T Consensus 195 ~~tf~~~v~~~ikq~s~l~p~sl~~~K 221 (266)
T KOG0016|consen 195 AETFNEEVLKKIKQYSKLSPESLLGMK 221 (266)
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999999999999998776
|
|
| >PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=260.66 Aligned_cols=173 Identities=28% Similarity=0.405 Sum_probs=149.6
Q ss_pred CHHHHHHHHHHhh-cCCCceEEEEEeCCCCccccccCcccccc-CchhH---HHHHHH-HHHHHHHHhcCCCcEEEEEcc
Q 030339 1 MLRGLKHAFETIS-EDSSANVVMIRSSVPKVFCAGADLKVLQM-SPSEI---HFYVNT-LRSTFSFLEALPIPTIAVIDG 74 (179)
Q Consensus 1 m~~~l~~~l~~~~-~d~~v~~vvl~g~~~~~F~~G~D~~~~~~-~~~~~---~~~~~~-~~~~~~~~~~~~kp~ia~v~G 74 (179)
|+.+|.+++++++ .|+++++|||||.+++.||+|.|+..+.. ..... ...... ...+...+.++|||+||+|||
T Consensus 53 m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG 132 (550)
T PRK08184 53 VDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANIFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFIAAVNG 132 (550)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCHHhHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 6789999999999 78999999999986689999999998721 11111 111111 122455678899999999999
Q ss_pred cccchhHHHHhhcCEEEEcCC--ceeeccccc-ccccCCcchhhhhh--cccCHHHHHHHHhcCCCcCHHHHHhcCcccc
Q 030339 75 AALGGGLEMALACDLRICGEA--ALLGLPETG-LAIIPGAGGTQRLP--RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNY 149 (179)
Q Consensus 75 ~a~g~G~~l~~~~D~~va~~~--a~~~~p~~~-~G~~p~~~~~~~l~--~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~ 149 (179)
+|+|||++|+++||+||++++ ++|++||++ +|++|++++++++. +++|+.++++++++|++++++||+++||||+
T Consensus 133 ~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~ 212 (550)
T PRK08184 133 TCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVLPGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDE 212 (550)
T ss_pred EeehHHHHHHHhCCEEEEecCCCcEEEccchhccccCCCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccE
Confidence 999999999999999999987 899999997 99999999998888 6799999999999999999999999999999
Q ss_pred ccCCChHHHHHHHHHHHHhccCHH
Q 030339 150 YVPAGQAQLKALEIAQEINQKVQS 173 (179)
Q Consensus 150 v~~~~~~~~~a~~~a~~~~~~~~~ 173 (179)
+++++++.+++.+++++++.+||.
T Consensus 213 vv~~d~l~~~a~~~A~~ia~~~~~ 236 (550)
T PRK08184 213 VVKPSKFDAKVAERAAELAAASDR 236 (550)
T ss_pred eeCHHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999998874
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-37 Score=267.95 Aligned_cols=168 Identities=35% Similarity=0.619 Sum_probs=148.1
Q ss_pred CHHHHHHHHHHhhcCCCceEE-EEEeCCCCccccccCccccc--cCchhHHHHHHHHHHHHHHHhcCCCcEEEEEccccc
Q 030339 1 MLRGLKHAFETISEDSSANVV-MIRSSVPKVFCAGADLKVLQ--MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 77 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~v-vl~g~~~~~F~~G~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~ 77 (179)
|+.+|.+++++++.|+++|+| |++|. +++||+|.|++++. ........+....++++.++.++||||||+|||+|+
T Consensus 42 ~~~~L~~al~~~~~d~~vr~vVvltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAav~G~a~ 120 (737)
T TIGR02441 42 LFAEFKEVMNELWTNEAIKSAVLISGK-PGSFVAGADIQMIAACKTAQEVTQLSQEGQEMFERIEKSQKPIVAAISGSCL 120 (737)
T ss_pred HHHHHHHHHHHHhhCCCCEEEEEEECC-CCcceeCcCHHHHhccCChHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEee
Confidence 578999999999999999975 56887 78999999999883 223334455566778899999999999999999999
Q ss_pred chhHHHHhhcCEEEEcCC--ceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCC--
Q 030339 78 GGGLEMALACDLRICGEA--ALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA-- 153 (179)
Q Consensus 78 g~G~~l~~~~D~~va~~~--a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~-- 153 (179)
|||++|+++||+||++++ ++|++||+++|++|++|++++|++++|..++++++++|++++++||+++||||+|+++
T Consensus 121 GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~~~ 200 (737)
T TIGR02441 121 GGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTGVPAALDMMLTGKKIRADRAKKMGIVDQLVDPLG 200 (737)
T ss_pred cHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhhCHHHHHHHHHcCCcCCHHHHHHCCCCeEecCCcc
Confidence 999999999999999998 5899999999999999999999999999999999999999999999999999999986
Q ss_pred -----------ChHHHHHHHHHHHHhc
Q 030339 154 -----------GQAQLKALEIAQEINQ 169 (179)
Q Consensus 154 -----------~~~~~~a~~~a~~~~~ 169 (179)
+++.+.+..++++++.
T Consensus 201 ~~~~~l~~~~~~~l~~~A~~~a~~l~~ 227 (737)
T TIGR02441 201 PGLKPAEENTIEYLEEVAVKFAQGLAN 227 (737)
T ss_pred cccccchhhhHHHHHHHHHHHHHHhhc
Confidence 4467777777777654
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=223.20 Aligned_cols=176 Identities=28% Similarity=0.522 Sum_probs=156.2
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeC--CCCccccccCcccc-c----cCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Q 030339 2 LRGLKHAFETISEDSSANVVMIRSS--VPKVFCAGADLKVL-Q----MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDG 74 (179)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~--~~~~F~~G~D~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G 74 (179)
+.|+.++|..+..|++|.+|+|||. |++.||+|.|-+.- . .+.+.... -...++-+.|+++|||+||.|+|
T Consensus 48 V~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~d~~~~r--LnvLdlQrlIR~~PKpViA~V~G 125 (282)
T COG0447 48 VDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVDDDGIPR--LNVLDLQRLIRTMPKPVIAMVAG 125 (282)
T ss_pred HHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCccCCccCcc--cchhhHHHHHHhCCcceEEEEee
Confidence 5789999999999999999999975 78999999998654 1 01111111 11234455778999999999999
Q ss_pred cccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCC
Q 030339 75 AALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG 154 (179)
Q Consensus 75 ~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~ 154 (179)
+++|||-.|-+.||+.||+++++|+...++.|-+-++.++..|.+.+|+..|++..+.|+.++|+||+++|+||.|+|.+
T Consensus 126 ~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~VGqKkArEIwfLcR~Y~A~eal~MGlVN~Vvp~~ 205 (282)
T COG0447 126 YAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAEEALDMGLVNTVVPHA 205 (282)
T ss_pred EeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHhhhhhhHHhhhhhhhccHHHHHhcCceeeeccHH
Confidence 99999999999999999999999999999999998888888999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhccCHHHHHhhC
Q 030339 155 QAQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 155 ~~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+++++..+|++++.+++|.++++.|
T Consensus 206 ~LE~e~v~W~~E~l~kSP~AlR~LK 230 (282)
T COG0447 206 DLEKETVQWAREMLAKSPTALRMLK 230 (282)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHH
Confidence 9999999999999999999999987
|
|
| >KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=200.40 Aligned_cols=176 Identities=26% Similarity=0.424 Sum_probs=158.1
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccc--cCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ--MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 78 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g 78 (179)
|+.+|.+.|..-..+.++|+|||+.. |+.||+|.|++++. ...+--.+.+....+++..|+++|.|+|+.|||++..
T Consensus 60 M~~~Lq~~ll~d~d~~dlr~viita~-GkifSaGH~LKELt~e~g~d~haevFqtc~dvmn~Irn~pVPVia~VNG~AaA 138 (287)
T KOG1682|consen 60 MMCALQDALLKDKDNLDLRCVIITAQ-GKIFSAGHNLKELTNEPGSDIHAEVFQTCTDVMNDIRNLPVPVIAKVNGYAAA 138 (287)
T ss_pred HHHHHHHHHhhcccccceeEEEEecC-CccccccccHHHhhcCccchHHHHHHHHHHHHHHHHhcCCCceEEEecchhhh
Confidence 78899999999889999999999998 89999999999993 2234445566677788999999999999999999999
Q ss_pred hhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHH
Q 030339 79 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 158 (179)
Q Consensus 79 ~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~ 158 (179)
.|+.|...||++|++++++|..|..+.|++...-+. -+.|.+++..+.+|++||+|++++||+-.|||+++||.+|+..
T Consensus 139 AGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPGv-AlaRavpRkva~~ML~Tg~Pi~~eeAl~sGlvskvVp~~el~~ 217 (287)
T KOG1682|consen 139 AGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPGV-ALARAVPRKVAAYMLMTGLPITGEEALISGLVSKVVPAEELDK 217 (287)
T ss_pred ccceEEEeeeEEEEecCccccCCCCceeeEecCcch-hHhhhcchhHHHHHHHhCCCCchHHHHHhhhhhhcCCHHHHHH
Confidence 999999999999999999999999999998655443 5778899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhh
Q 030339 159 KALEIAQEINQKVQSVFRIL 178 (179)
Q Consensus 159 ~a~~~a~~~~~~~~~a~~~~ 178 (179)
|+++++.+|...++..+..-
T Consensus 218 e~~~i~~~i~~~srav~slg 237 (287)
T KOG1682|consen 218 EIEEITNAIKAKSRAVISLG 237 (287)
T ss_pred HHHHHHHHHhhhHHHHHHHH
Confidence 99999999999888877643
|
|
| >KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-30 Score=202.08 Aligned_cols=174 Identities=26% Similarity=0.495 Sum_probs=152.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-----ccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-----QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGA 75 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~ 75 (179)
|+..+.-.|..++.++.+++||+.|+++++||+|+|+... +........++.+.+.+...+.++.||.||.++|.
T Consensus 66 Mv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~~~~fF~~eYsl~~~igtY~KP~ValmdGI 145 (401)
T KOG1684|consen 66 MVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPEVKKFFTEEYSLNHLIGTYLKPYVALMDGI 145 (401)
T ss_pred HHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHhcCceEEEeece
Confidence 6778888999999999999999999999999999998765 33445678888888899999999999999999999
Q ss_pred ccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCCh
Q 030339 76 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 155 (179)
Q Consensus 76 a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~ 155 (179)
.+|||..|++..-||||++++.|.+||..+|++|+.|++|++++.-| ....++.+||+++++.||+..||.++.|++++
T Consensus 146 TMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlpg-~lg~YLgLTG~rl~GaD~~~~GlATHyv~S~~ 224 (401)
T KOG1684|consen 146 TMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLPG-YLGLYLGLTGQRLSGADALRCGLATHYVPSEK 224 (401)
T ss_pred eecCCcceeecceeEEeeccceecccccccccccCccceeehhhCcc-HHHHhhhhccceecchHHHHhcchhhccchhh
Confidence 99999999999999999999999999999999999999999999777 78999999999999999999999999999877
Q ss_pred HHHHHHHHHHHHhccCHHHH
Q 030339 156 AQLKALEIAQEINQKVQSVF 175 (179)
Q Consensus 156 ~~~~a~~~a~~~~~~~~~a~ 175 (179)
+-.-=.++.+.+...|...+
T Consensus 225 l~~Lee~L~~~l~~dp~~~I 244 (401)
T KOG1684|consen 225 LPSLEERLLKNLNDDPQSVI 244 (401)
T ss_pred hhHHHHHHhhhcCCCcHHHH
Confidence 64333344445555443443
|
|
| >cd07014 S49_SppA Signal peptide peptidase A | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.3e-24 Score=158.14 Aligned_cols=142 Identities=17% Similarity=0.162 Sum_probs=115.6
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhH
Q 030339 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 81 (179)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~ 81 (179)
+.+|.++++++++|+++++|||++ +|.|.|+.. ...+.+++..+.+++||+||+++|.|.|+|+
T Consensus 24 ~~~l~~~l~~a~~d~~v~~vvl~~-----~~~gg~~~~-----------~~~~~~~i~~~~~~~kpVia~v~G~a~g~g~ 87 (177)
T cd07014 24 GDTTAAQIRDARLDPKVKAIVLRV-----NSPGGSVTA-----------SEVIRAELAAARAAGKPVVASGGGNAASGGY 87 (177)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEe-----eCCCcCHHH-----------HHHHHHHHHHHHhCCCCEEEEECCchhHHHH
Confidence 578999999999999999999987 477877642 1345567778889999999999999999999
Q ss_pred HHHhhcCEEEEcCCceeecccccccccCCcchhh--------hhhccc--CHHHHHHHHhcCCCcCHHHHHhcCcccccc
Q 030339 82 EMALACDLRICGEAALLGLPETGLAIIPGAGGTQ--------RLPRLV--GKSVAKDIIFTGRKVSGKDAMSLGLVNYYV 151 (179)
Q Consensus 82 ~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~--------~l~~~~--g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~ 151 (179)
.++++||++++++++.|+.+....+..+...... .+++.. .....++++..|.++++++|++.||||++.
T Consensus 88 ~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLVD~v~ 167 (177)
T cd07014 88 WISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLVDSLG 167 (177)
T ss_pred HHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCcccCC
Confidence 9999999999999999999987666433222222 333333 478889999999999999999999999999
Q ss_pred CCChHHHH
Q 030339 152 PAGQAQLK 159 (179)
Q Consensus 152 ~~~~~~~~ 159 (179)
+.+++.++
T Consensus 168 ~~~e~~~~ 175 (177)
T cd07014 168 SFDDAVAK 175 (177)
T ss_pred CHHHHHHH
Confidence 87666543
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p |
| >cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-22 Score=150.64 Aligned_cols=137 Identities=18% Similarity=0.258 Sum_probs=109.0
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEc---ccccch
Q 030339 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVID---GAALGG 79 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~---G~a~g~ 79 (179)
..+.+.|+.+++++ ++.|+|.=+ |.|.++ .....++..+..+|||+|++++ |+|.|+
T Consensus 16 ~~l~~~l~~a~~~~-~~~vvl~In-----SpGG~v--------------~~~~~i~~~l~~~~kPvia~v~~~~G~Aasg 75 (187)
T cd07020 16 DYLERAIDQAEEGG-ADALIIELD-----TPGGLL--------------DSTREIVQAILASPVPVVVYVYPSGARAASA 75 (187)
T ss_pred HHHHHHHHHHHhCC-CCEEEEEEE-----CCCCCH--------------HHHHHHHHHHHhCCCCEEEEEecCCCCchhH
Confidence 56788899998765 677887743 223443 2233556677889999999999 999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCc--------------chhhhhhcccCH--HHHHHHHhcCCCcCHHHHHh
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGA--------------GGTQRLPRLVGK--SVAKDIIFTGRKVSGKDAMS 143 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~--------------~~~~~l~~~~g~--~~a~~l~l~g~~~~a~~a~~ 143 (179)
|+.++++||+++++++++|+.+++..+..+.. .....+++..|. ..+++++++|+.++++||++
T Consensus 76 G~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~a~~~l~~g~~~~a~eA~~ 155 (187)
T cd07020 76 GTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRGRNAEWAEKAVRESLSLTAEEALK 155 (187)
T ss_pred HHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCeecHHHHHH
Confidence 99999999999999999999999985544432 234467777786 68999999999999999999
Q ss_pred cCccccccCCC-hHHHH
Q 030339 144 LGLVNYYVPAG-QAQLK 159 (179)
Q Consensus 144 ~Glv~~v~~~~-~~~~~ 159 (179)
+||||++++++ ++...
T Consensus 156 ~Glvd~v~~~~~~~~~~ 172 (187)
T cd07020 156 LGVIDLIAADLNELLKK 172 (187)
T ss_pred cCCcccccCCHHHHHHH
Confidence 99999999875 55544
|
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c |
| >cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.8e-19 Score=135.48 Aligned_cols=85 Identities=16% Similarity=0.239 Sum_probs=74.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchh
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G 80 (179)
++.+|.++|+.+.+||++++|||+ .||.|.|+..+ ..+.+.++.+..++||+||.++|.|.|+|
T Consensus 22 ~~~~l~~~l~~a~~d~~v~~ivL~-----~~s~Gg~~~~~-----------~~~~~~l~~~~~~~kpVia~v~g~a~s~g 85 (211)
T cd07019 22 GGDTTAAQIRDARLDPKVKAIVLR-----VNSPGGSVTAS-----------EVIRAELAAARAAGKPVVVSAGGAAASGG 85 (211)
T ss_pred CHHHHHHHHHHHhhCCCceEEEEE-----EcCCCcCHHHH-----------HHHHHHHHHHHhCCCCEEEEECCeehhHH
Confidence 367899999999999999999997 58999998542 23455677788899999999999999999
Q ss_pred HHHHhhcCEEEEcCCceeecc
Q 030339 81 LEMALACDLRICGEAALLGLP 101 (179)
Q Consensus 81 ~~l~~~~D~~va~~~a~~~~p 101 (179)
+.|+++||++++++++.++..
T Consensus 86 y~la~~aD~i~a~~~a~~gsi 106 (211)
T cd07019 86 YWISTPANYIVANPSTLTGSI 106 (211)
T ss_pred HHHHHhCCEEEEcCCCEEEEe
Confidence 999999999999999988743
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te |
| >TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.7e-18 Score=146.89 Aligned_cols=150 Identities=21% Similarity=0.268 Sum_probs=118.5
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCC--CccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchh
Q 030339 3 RGLKHAFETISEDSSANVVMIRSSVP--KVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~--~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G 80 (179)
+.+.+.|+.+..|+++++|||+-+++ ..|+ .+.+++.+.++...+||+|+.++|.|.+||
T Consensus 332 ~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~a------------------se~i~~~i~~~~~~gKPVva~~~g~aaSgg 393 (584)
T TIGR00705 332 DTVAALLRVARSDPDIKAVVLRINSPGGSVFA------------------SEIIRRELARAQARGKPVIVSMGAMAASGG 393 (584)
T ss_pred HHHHHHHHHHhhCCCceEEEEEecCCCCCHHH------------------HHHHHHHHHHHHhCCCcEEEEECCccccHH
Confidence 56788999999999999999997632 2233 144556667777889999999999999999
Q ss_pred HHHHhhcCEEEEcCCcee------eccc------ccccccCCcchhhhhhc----------------------------c
Q 030339 81 LEMALACDLRICGEAALL------GLPE------TGLAIIPGAGGTQRLPR----------------------------L 120 (179)
Q Consensus 81 ~~l~~~~D~~va~~~a~~------~~p~------~~~G~~p~~~~~~~l~~----------------------------~ 120 (179)
+.++++||.++++|.+.+ +.+. .++|+.++...+..++. .
T Consensus 394 Y~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~~~~t~~~~~~~~~~l~~~y~~F~~~ 473 (584)
T TIGR00705 394 YWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSLLRPLTAEDQAIMQLSVEAGYRRFLSV 473 (584)
T ss_pred HHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999877 4442 57888887666655543 3
Q ss_pred cCHHH-----HHHHHhcCCCcCHHHHHhcCccccccCCChHHHHHHHHHHHHhcc-CHHH
Q 030339 121 VGKSV-----AKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK-VQSV 174 (179)
Q Consensus 121 ~g~~~-----a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~a~~~a~~~~~~-~~~a 174 (179)
++..+ ..+.+..|+.++++||+++||||++. .+ +++.+.|++++.. ++..
T Consensus 474 Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig---~~-~~Ai~~a~~la~~~~~~~ 529 (584)
T TIGR00705 474 VSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALG---GL-DEAVAKAAKLAHCREQWS 529 (584)
T ss_pred HHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCC---CH-HHHHHHHHHHcCCCCCce
Confidence 44444 66778899999999999999999993 34 7888889999887 4433
|
E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both. |
| >cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-17 Score=120.88 Aligned_cols=131 Identities=17% Similarity=0.166 Sum_probs=101.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchh
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G 80 (179)
|+++|.+.|+.++.|++++.|+|+.. |.|.|+. ....+...+..++||+|+.++|.|.++|
T Consensus 12 ~~~~l~~~l~~a~~d~~~~~ivl~~~-----s~Gg~~~--------------~~~~i~~~l~~~~kpvva~~~g~~~s~g 72 (161)
T cd00394 12 SADQLAAQIRFAEADNSVKAIVLEVN-----TPGGRVD--------------AGMNIVDALQASRKPVIAYVGGQAASAG 72 (161)
T ss_pred hHHHHHHHHHHHHhCCCCceEEEEEE-----CCCcCHH--------------HHHHHHHHHHHhCCCEEEEECChhHHHH
Confidence 46889999999999999999999874 5566552 2344566777888999999999999999
Q ss_pred HHHHhhcCEEEEcCCceeecccccccccCCc--ch-----------hhhhh------cccCHHHHHHHHhcCCCcCHHHH
Q 030339 81 LEMALACDLRICGEAALLGLPETGLAIIPGA--GG-----------TQRLP------RLVGKSVAKDIIFTGRKVSGKDA 141 (179)
Q Consensus 81 ~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~--~~-----------~~~l~------~~~g~~~a~~l~l~g~~~~a~~a 141 (179)
+.|+++||.+++.|++.|+++.+..+..... .. ...+. +.+......+++..+..++++||
T Consensus 73 ~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~~~a~eA 152 (161)
T cd00394 73 YYIATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLVLTAQEA 152 (161)
T ss_pred HHHHhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcEEcHHHH
Confidence 9999999999999999999988865543221 00 01111 11234456778888999999999
Q ss_pred HhcCccccc
Q 030339 142 MSLGLVNYY 150 (179)
Q Consensus 142 ~~~Glv~~v 150 (179)
+++||||++
T Consensus 153 ~~~GLvD~i 161 (161)
T cd00394 153 LEYGLVDAL 161 (161)
T ss_pred HHcCCcCcC
Confidence 999999985
|
Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec |
| >cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.4e-17 Score=122.37 Aligned_cols=85 Identities=20% Similarity=0.280 Sum_probs=72.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchh
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G 80 (179)
|+.+|.+.|+.++.|+++++|+|++. |.|.|+.. ...+.+.++.+..++||+||+++|.|.|+|
T Consensus 18 ~~~~l~~~l~~a~~d~~i~~ivl~~~-----s~Gg~~~~-----------~~~i~~~i~~~~~~~kpvia~v~g~~~s~g 81 (208)
T cd07023 18 GADSLIEQLRKAREDDSVKAVVLRIN-----SPGGSVVA-----------SEEIYREIRRLRKAKKPVVASMGDVAASGG 81 (208)
T ss_pred CHHHHHHHHHHHHhCCCCcEEEEEEE-----CCCCCHHH-----------HHHHHHHHHHHHhcCCcEEEEECCcchhHH
Confidence 57889999999999999999999884 66777743 123455677788899999999999999999
Q ss_pred HHHHhhcCEEEEcCCceeecc
Q 030339 81 LEMALACDLRICGEAALLGLP 101 (179)
Q Consensus 81 ~~l~~~~D~~va~~~a~~~~p 101 (179)
+.++++||.+++++++.|+..
T Consensus 82 ~~lA~aaD~i~a~~~s~~g~i 102 (208)
T cd07023 82 YYIAAAADKIVANPTTITGSI 102 (208)
T ss_pred HHHHhhCCEEEECCCCeEEeC
Confidence 999999999999999988653
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad |
| >cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.1e-17 Score=123.28 Aligned_cols=138 Identities=18% Similarity=0.199 Sum_probs=95.1
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchh
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G 80 (179)
|+.+|.++|+.+++|+++++|||+.. |.|.++.. .+.+.+.+..+.. +||+||+++|.|.|+|
T Consensus 26 ~~~~l~~~l~~a~~d~~i~~Vvl~~~-----s~gg~~~~-----------~~~l~~~l~~~~~-~KpViA~v~g~a~s~g 88 (214)
T cd07022 26 SYEGIAAAIRAALADPDVRAIVLDID-----SPGGEVAG-----------VFELADAIRAARA-GKPIVAFVNGLAASAA 88 (214)
T ss_pred cHHHHHHHHHHHhhCCCCcEEEEEEe-----CCCCcHHH-----------HHHHHHHHHHHhc-CCCEEEEECCchhhHH
Confidence 47899999999999999999999864 44554421 1233444444555 6999999999999999
Q ss_pred HHHHhhcCEEEEcCCceeecccc------------cccccCCcchhh------------------hhh------------
Q 030339 81 LEMALACDLRICGEAALLGLPET------------GLAIIPGAGGTQ------------------RLP------------ 118 (179)
Q Consensus 81 ~~l~~~~D~~va~~~a~~~~p~~------------~~G~~p~~~~~~------------------~l~------------ 118 (179)
+.++++||++++++++.|+.... ++|+-+...-+- .+.
T Consensus 89 y~lA~~aD~i~a~~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~re~~~~~l~~~~~~f~~ 168 (214)
T cd07022 89 YWIASAADRIVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDEPLSDEARARLQAEVDALYAMFVA 168 (214)
T ss_pred HHHHhcCCEEEEcCCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999865422 222211100000 000
Q ss_pred -----cccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHH
Q 030339 119 -----RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 157 (179)
Q Consensus 119 -----~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~ 157 (179)
|.+.....+++. |..+++++|++.||||++...+++.
T Consensus 169 ~V~~~R~~~~~~~~~~~--~~~~~~~~Al~~gLvD~i~~~~~~~ 210 (214)
T cd07022 169 AVARNRGLSAAAVRATE--GGVFRGQEAVAAGLADAVGTLDDAL 210 (214)
T ss_pred HHHHhCCCCHHHHHHhh--cCeeeHHHHHHcCCCcccCCHHHHH
Confidence 011133334444 8999999999999999997554443
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. |
| >cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-16 Score=116.01 Aligned_cols=127 Identities=17% Similarity=0.173 Sum_probs=98.6
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhH
Q 030339 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 81 (179)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~ 81 (179)
.+++.+.|+.++.++.+ .+.|.+.||. + .....+.+.+..++||+++.++|.|.|+|+
T Consensus 17 ~~~~~~~l~~~~~~~~i-~l~inspGG~-------~--------------~~~~~i~~~i~~~~~pvi~~v~g~a~s~g~ 74 (160)
T cd07016 17 AKEFKDALDALGDDSDI-TVRINSPGGD-------V--------------FAGLAIYNALKRHKGKVTVKIDGLAASAAS 74 (160)
T ss_pred HHHHHHHHHhccCCCCE-EEEEECCCCC-------H--------------HHHHHHHHHHHhcCCCEEEEEcchHHhHHH
Confidence 46788889998887443 4555555332 2 123456777888999999999999999999
Q ss_pred HHHhhcCEEEEcCCceeecccccccccCCcc---------------hhhhhhcccC--HHHHHHHHhcCCCcCHHHHHhc
Q 030339 82 EMALACDLRICGEAALLGLPETGLAIIPGAG---------------GTQRLPRLVG--KSVAKDIIFTGRKVSGKDAMSL 144 (179)
Q Consensus 82 ~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~---------------~~~~l~~~~g--~~~a~~l~l~g~~~~a~~a~~~ 144 (179)
.++++||+|+++++++|.++....+..+... ....+.+..| .....+++..+..++++||+++
T Consensus 75 ~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~eA~~~ 154 (160)
T cd07016 75 VIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTAQEAVEL 154 (160)
T ss_pred HHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHHHHHc
Confidence 9999999999999999999887766555432 2233666677 6777888888889999999999
Q ss_pred Cccccc
Q 030339 145 GLVNYY 150 (179)
Q Consensus 145 Glv~~v 150 (179)
||||+|
T Consensus 155 GliD~v 160 (160)
T cd07016 155 GFADEI 160 (160)
T ss_pred CCCCcC
Confidence 999986
|
Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a |
| >TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.8e-16 Score=118.72 Aligned_cols=139 Identities=22% Similarity=0.281 Sum_probs=97.2
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCC--CcEEEEEcccccch
Q 030339 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALP--IPTIAVIDGAALGG 79 (179)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--kp~ia~v~G~a~g~ 79 (179)
..+|.+.|+.+++|+++++|||+.. |.|.++. ...++...+.+++ ||+|+.++|.|.|+
T Consensus 15 ~~~l~~~l~~a~~d~~i~~vvl~~~-----s~Gg~~~--------------~~~~l~~~i~~~~~~kpvia~v~g~a~s~ 75 (207)
T TIGR00706 15 PEDFDKKIKRIKDDKSIKALLLRIN-----SPGGTVV--------------ASEEIYEKLKKLKAKKPVVASMGGVAASG 75 (207)
T ss_pred HHHHHHHHHHHhhCCCccEEEEEec-----CCCCCHH--------------HHHHHHHHHHHhcCCCCEEEEECCccchH
Confidence 4688999999999999999999986 4566552 2244555566666 99999999999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccc------------cccccCCcc--------------hh----hhh------------
Q 030339 80 GLEMALACDLRICGEAALLGLPET------------GLAIIPGAG--------------GT----QRL------------ 117 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~------------~~G~~p~~~--------------~~----~~l------------ 117 (179)
|+.++++||.++++|++.++...+ ++|+-+... .+ ..+
T Consensus 76 g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~~~~~f~ 155 (207)
T TIGR00706 76 GYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTRELTPEERDILQNLVNESYEQFV 155 (207)
T ss_pred HHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998766333 223321000 00 000
Q ss_pred -----hcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHHH
Q 030339 118 -----PRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKA 160 (179)
Q Consensus 118 -----~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~a 160 (179)
.|.+......++ ..++.+++++|++.||||++...+++.+.+
T Consensus 156 ~~va~~R~~~~~~~~~~-~~~~~~~~~~A~~~gLvD~i~~~~~~~~~~ 202 (207)
T TIGR00706 156 QVVAKGRNLPVEDVKKF-ADGRVFTGRQALKLRLVDKLGTEDDALKWL 202 (207)
T ss_pred HHHHhcCCCCHHHHHHH-hcCCcccHHHHHHcCCCcccCCHHHHHHHH
Confidence 011223333343 578899999999999999997555544433
|
The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively. |
| >cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-15 Score=117.04 Aligned_cols=141 Identities=21% Similarity=0.170 Sum_probs=99.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchh
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G 80 (179)
++.+|.+.|+.+..||++++|||+.+ +..| ++.+. +++.+.++.+...+||+||.++| +.++|
T Consensus 30 ~~~~l~~~l~~a~~d~~ik~vvL~~~-s~gg-~~~~~--------------~el~~~i~~~~~~~kpVia~~~~-~~sgg 92 (222)
T cd07018 30 SLRDLLEALEKAAEDDRIKGIVLDLD-GLSG-GLAKL--------------EELRQALERFRASGKPVIAYADG-YSQGQ 92 (222)
T ss_pred cHHHHHHHHHHHhcCCCeEEEEEECC-CCCC-CHHHH--------------HHHHHHHHHHHHhCCeEEEEeCC-CCchh
Confidence 36789999999999999999999998 4445 44433 34466677777789999999998 88999
Q ss_pred HHHHhhcCEEEEcCCceeeccccc------------ccccCCc---------chhhh-----------hh----------
Q 030339 81 LEMALACDLRICGEAALLGLPETG------------LAIIPGA---------GGTQR-----------LP---------- 118 (179)
Q Consensus 81 ~~l~~~~D~~va~~~a~~~~p~~~------------~G~~p~~---------~~~~~-----------l~---------- 118 (179)
+.++++||.+++.+.+.|+...+. +|+-+.. +..+. +.
T Consensus 93 y~lasaad~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~~l~~~~~~f 172 (222)
T cd07018 93 YYLASAADEIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQALLDSLWDQY 172 (222)
T ss_pred hhhhhhCCEEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998875331 2322210 00000 00
Q ss_pred -------cccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 119 -------RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 119 -------~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
|.+......+ +..|+.+++++|++.||||++...+++.+.
T Consensus 173 ~~~Va~~R~~~~~~~~~-~~~~~~~~~~~A~~~GLvD~i~~~~e~~~~ 219 (222)
T cd07018 173 LADVAASRGLSPDALEA-LIDLGGDSAEEALEAGLVDGLAYRDELEAR 219 (222)
T ss_pred HHHHHHHcCCCHHHHHH-HHHcCCcHHHHHHHCCCCCcCCcHHHHHHH
Confidence 0011222233 335899999999999999999765555443
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys |
| >cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-13 Score=101.49 Aligned_cols=131 Identities=18% Similarity=0.235 Sum_probs=94.8
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHH
Q 030339 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLE 82 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~ 82 (179)
..|.+.|+++++++ .+.|++.=++ .|+++ .....+...+..+++|+|+.|+|.|.|+|+.
T Consensus 16 ~~l~~~l~~a~~~~-~~~ivl~ins-----pGG~v--------------~~~~~I~~~l~~~~~pvva~V~g~AaSaG~~ 75 (178)
T cd07021 16 AFVERALKEAKEEG-ADAVVLDIDT-----PGGRV--------------DSALEIVDLILNSPIPTIAYVNDRAASAGAL 75 (178)
T ss_pred HHHHHHHHHHHhCC-CCeEEEEEEC-----cCCCH--------------HHHHHHHHHHHhCCCCEEEEECCchHHHHHH
Confidence 45788899999886 6777776652 23333 3456677888899999999999999999999
Q ss_pred HHhhcCEEEEcCCceeecccccccccCC----c---chhhh---hhcc--cCHHHHHHHHhcC-------------CCcC
Q 030339 83 MALACDLRICGEAALLGLPETGLAIIPG----A---GGTQR---LPRL--VGKSVAKDIIFTG-------------RKVS 137 (179)
Q Consensus 83 l~~~~D~~va~~~a~~~~p~~~~G~~p~----~---~~~~~---l~~~--~g~~~a~~l~l~g-------------~~~~ 137 (179)
++++||+++++|++.|+.+++-.+-..+ - ..... +.+. -+...+..|+... ..++
T Consensus 76 ia~a~d~i~m~p~a~iG~~~~v~~~~~~~~~~K~~~~~~~~~~~~A~~~gr~~~~a~~mv~~~~~v~~~~~~~~~~l~lt 155 (178)
T cd07021 76 IALAADEIYMAPGATIGAAEPIPGDGNGAADEKVQSYWRAKMRAAAEKKGRDPDIAEAMVDKDIEVPGVGIKGGELLTLT 155 (178)
T ss_pred HHHhCCeEEECCCCeEecCeeEcCCCccchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhhhcccccccccccceeeeC
Confidence 9999999999999999988553221100 0 00001 1112 1356667777665 3799
Q ss_pred HHHHHhcCccccccCC
Q 030339 138 GKDAMSLGLVNYYVPA 153 (179)
Q Consensus 138 a~~a~~~Glv~~v~~~ 153 (179)
++||++.|++|.+.++
T Consensus 156 a~eA~~~g~~d~ia~~ 171 (178)
T cd07021 156 ADEALKVGYAEGIAGS 171 (178)
T ss_pred HHHHHHhCCeEEEECC
Confidence 9999999999999863
|
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall |
| >PRK10949 protease 4; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.6e-12 Score=109.17 Aligned_cols=147 Identities=18% Similarity=0.230 Sum_probs=100.7
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHH
Q 030339 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLE 82 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~ 82 (179)
+.+.+.|+.+..|+++|+|||+-++++ ... ...+.+++.+.+++...||+|+.+.+.|.+||+.
T Consensus 350 ~~~~~~l~~a~~D~~vkaVvLrInSpG-----Gs~-----------~ase~i~~~i~~~r~~gKPVvas~~~~aASggY~ 413 (618)
T PRK10949 350 DTTAAQIRDARLDPKVKAIVLRVNSPG-----GSV-----------TASEVIRAELAAARAAGKPVVVSMGGMAASGGYW 413 (618)
T ss_pred HHHHHHHHHHHhCCCCcEEEEEecCCC-----CcH-----------HHHHHHHHHHHHHHhcCCcEEEEECCCCccHHHH
Confidence 467889999999999999999987432 211 1234556666667778899999999999999999
Q ss_pred HHhhcCEEEEcCCceeecccc------------cccccCCcchhhhhh--------------------------------
Q 030339 83 MALACDLRICGEAALLGLPET------------GLAIIPGAGGTQRLP-------------------------------- 118 (179)
Q Consensus 83 l~~~~D~~va~~~a~~~~p~~------------~~G~~p~~~~~~~l~-------------------------------- 118 (179)
++++||.+++.|.+..+.-.+ ++|+-.+...+..+.
T Consensus 414 iA~aad~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va 493 (618)
T PRK10949 414 ISTPANYIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADVSITKALPPEFQQMMQLSIENGYKRFITLVA 493 (618)
T ss_pred HHHhcCEEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999877555322 233322211111110
Q ss_pred --cccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHHHHHHHHHHhcc
Q 030339 119 --RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170 (179)
Q Consensus 119 --~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~a~~~a~~~~~~ 170 (179)
|.+......+ +..|+.+++++|++.||||++-. .+++.+.+++++..
T Consensus 494 ~~R~~~~~~v~~-ia~Grv~tg~~A~~~GLVD~lG~----~~~ai~~a~~~a~~ 542 (618)
T PRK10949 494 DSRHKTPEQIDK-IAQGHVWTGQDAKANGLVDSLGD----FDDAVAKAAELAKL 542 (618)
T ss_pred hhCCCCHHHHHH-HhcCCcccHHHHHHcCCCccCCC----HHHHHHHHHHHcCC
Confidence 1112333333 45899999999999999999954 33455555555554
|
|
| >cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.7e-11 Score=88.41 Aligned_cols=131 Identities=15% Similarity=0.216 Sum_probs=95.8
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEc---ccccch
Q 030339 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVID---GAALGG 79 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~---G~a~g~ 79 (179)
.-|.+.++.++++ ..+.|+|.=+ |.|+++ .....+...+...++||++.++ |.|.++
T Consensus 16 ~~l~~~l~~A~~~-~~~~i~l~in-----SPGG~v--------------~~~~~I~~~i~~~~~pvv~~v~p~g~~AaSa 75 (172)
T cd07015 16 DQFDRYITIAEQD-NAEAIIIELD-----TPGGRA--------------DAAGNIVQRIQQSKIPVIIYVYPPGASAASA 75 (172)
T ss_pred HHHHHHHHHHhcC-CCCeEEEEEE-----CCCCCH--------------HHHHHHHHHHHhcCcCEEEEEecCCCeehhH
Confidence 3567888888776 4577777665 224433 2234556677788999999999 999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCC----c-------chhhh---hhcccC--HHHHHHHHhcCCCcCHHHHHh
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPG----A-------GGTQR---LPRLVG--KSVAKDIIFTGRKVSGKDAMS 143 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~----~-------~~~~~---l~~~~g--~~~a~~l~l~g~~~~a~~a~~ 143 (179)
|+.++++||.+++.|++.++...+..+..+. . ....+ +.+.-| ...+.+++.....++++||++
T Consensus 76 g~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~~~~a~~~v~~~~~lta~EA~~ 155 (172)
T cd07015 76 GTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRNATIAEEFITKDLSLTPEEALK 155 (172)
T ss_pred HHHHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhhcCcCHHHHHH
Confidence 9999999999999999999998875432120 0 00011 112222 567778888889999999999
Q ss_pred cCccccccCC
Q 030339 144 LGLVNYYVPA 153 (179)
Q Consensus 144 ~Glv~~v~~~ 153 (179)
+|+||.+.+.
T Consensus 156 ~G~iD~ia~~ 165 (172)
T cd07015 156 YGVIEVVARD 165 (172)
T ss_pred cCCceeeeCC
Confidence 9999999864
|
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle |
| >cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.3e-11 Score=87.11 Aligned_cols=130 Identities=12% Similarity=0.125 Sum_probs=90.9
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhH
Q 030339 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 81 (179)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~ 81 (179)
.+++.+.|..++.++..+.|+|.=+ |.|.++ .....++..+...++|+++.+.|.|.++|.
T Consensus 14 ~~~~~~~L~~l~~~~~~~~i~l~In-----SpGG~v--------------~~~~~i~~~i~~~~~~v~~~~~g~aaS~~~ 74 (162)
T cd07013 14 ANQFAAQLLFLGAVNPEKDIYLYIN-----SPGGDV--------------FAGMAIYDTIKFIKADVVTIIDGLAASMGS 74 (162)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEE-----CCCCcH--------------HHHHHHHHHHHhcCCCceEEEEeehhhHHH
Confidence 4577888889998877677766555 223333 223456677778899999999999999999
Q ss_pred HHHhhcC--EEEEcCCceeecccccccccCCcchh---------------hhhhcc--cCHHHHHHHHhcCCCcCHHHHH
Q 030339 82 EMALACD--LRICGEAALLGLPETGLAIIPGAGGT---------------QRLPRL--VGKSVAKDIIFTGRKVSGKDAM 142 (179)
Q Consensus 82 ~l~~~~D--~~va~~~a~~~~p~~~~G~~p~~~~~---------------~~l~~~--~g~~~a~~l~l~g~~~~a~~a~ 142 (179)
.+++++| .|++.|++.+.++.+.-+......-. ..+.+. .......+++..+..++++||+
T Consensus 75 ~i~~a~~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~eA~ 154 (162)
T cd07013 75 VIAMAGAKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLERDTWLSAREAV 154 (162)
T ss_pred HHHHcCCCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcCCccccHHHHH
Confidence 9999999 68888999988765432221110000 112222 2356666777777788999999
Q ss_pred hcCccccc
Q 030339 143 SLGLVNYY 150 (179)
Q Consensus 143 ~~Glv~~v 150 (179)
++||||++
T Consensus 155 ~~GliD~i 162 (162)
T cd07013 155 EYGFADTI 162 (162)
T ss_pred HcCCCCcC
Confidence 99999985
|
Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas |
| >COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.1e-11 Score=94.51 Aligned_cols=134 Identities=24% Similarity=0.335 Sum_probs=95.4
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHH
Q 030339 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLE 82 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~ 82 (179)
+.+.+.|+.+..||+++.|+|+=++|+ +... ....+.+.++++..-+ |+++.|+++|.+||+.
T Consensus 83 ~~~~~~l~~~~~~~~vk~vvL~inSPG-----G~v~-----------as~~i~~~l~~l~~~~-PV~v~v~~~AASGGY~ 145 (317)
T COG0616 83 DDIEEILRAARADPSVKAVVLRINSPG-----GSVV-----------ASELIARALKRLRAKK-PVVVSVGGYAASGGYY 145 (317)
T ss_pred HHHHHHHHHHhcCCCCceEEEEEECcC-----Cchh-----------HHHHHHHHHHHHhhcC-CEEEEECCeecchhhh
Confidence 567888999999999999999887433 2221 1234455556665555 9999999999999999
Q ss_pred HHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccC----------------------------------------
Q 030339 83 MALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVG---------------------------------------- 122 (179)
Q Consensus 83 l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g---------------------------------------- 122 (179)
++++||.+||+|++..+.-.+..+. |+ ...+-+..|
T Consensus 146 IA~aAd~I~a~p~si~GSIGVi~~~-~~---~~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~~~~q~~~~e~y~~F 221 (317)
T COG0616 146 IALAADKIVADPSSITGSIGVISGA-PN---FEELLEKLGVEKEVITAGEYKDILSPFRPLTEEEREILQKEIDETYDEF 221 (317)
T ss_pred hhccCCEEEecCCceeeeceeEEec-CC---HHHHHHhcCCceeeeeccccccccCcccCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998865554442 11 112222233
Q ss_pred ----------HHHHHHHHhcCCCcCHHHHHhcCccccccCCChHH
Q 030339 123 ----------KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 157 (179)
Q Consensus 123 ----------~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~ 157 (179)
......-+.+|+-+++++|++.||||++...++..
T Consensus 222 ~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~~~av 266 (317)
T COG0616 222 VDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGLDDAV 266 (317)
T ss_pred HHHHHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCCHHHHH
Confidence 11223456689999999999999999997544333
|
|
| >PRK11778 putative inner membrane peptidase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.9e-10 Score=88.59 Aligned_cols=104 Identities=23% Similarity=0.253 Sum_probs=69.7
Q ss_pred HHHHhcCCCcEEEEEcccccchhHHHHhhcCEEEEcCCceeeccccc------------ccccCCcchhhh---------
Q 030339 58 FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETG------------LAIIPGAGGTQR--------- 116 (179)
Q Consensus 58 ~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~------------~G~~p~~~~~~~--------- 116 (179)
+.++...+||+++.+++.|.+||+.++++||.+++.|.+.++...+. +|+-+...-+-.
T Consensus 147 l~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~~pf~ 226 (330)
T PRK11778 147 LQRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTLFG 226 (330)
T ss_pred HHHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeeeccCHHHHHHHCCCceEEEEecCccCCCCCCC
Confidence 45567789999999999999999999999999999999987764331 122110000000
Q ss_pred ---------hhcccC-----------HH---HHHHHHhcCCCcCHHHHHhcCccccccCCChHHHHHH
Q 030339 117 ---------LPRLVG-----------KS---VAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKAL 161 (179)
Q Consensus 117 ---------l~~~~g-----------~~---~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~a~ 161 (179)
+...+. .. ...+-+.+|+.+++++|++.||||++...+++..++.
T Consensus 227 ~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~dd~i~~~~ 294 (330)
T PRK11778 227 ENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTSDDYLLELM 294 (330)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCHHHHHHHHH
Confidence 000000 01 1123455799999999999999999987666654433
|
|
| >cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.3e-09 Score=80.45 Aligned_cols=130 Identities=11% Similarity=0.048 Sum_probs=91.2
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhH
Q 030339 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 81 (179)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~ 81 (179)
.+++...+..++.++..+.|+|.=+ |.|+|+ .....++..+...+.|+++.+.|.|.+.|.
T Consensus 23 ~~~i~~~l~~~~~~~~~~~i~l~in-----SpGG~v--------------~~~~~i~~~l~~~~~~v~t~~~g~aaS~~~ 83 (171)
T cd07017 23 ANLIIAQLLYLESEDPKKPIYLYIN-----SPGGSV--------------TAGLAIYDTMQYIKPPVSTICLGLAASMGA 83 (171)
T ss_pred HHHHHHHHHHHHccCCCCceEEEEE-----CCCCCH--------------HHHHHHHHHHHhcCCCEEEEEEeEehhHHH
Confidence 3567778888887755455555443 223333 223345566667799999999999999999
Q ss_pred HHHhhcC--EEEEcCCceeecccccccccCCcc---------------hhhhhhcc--cCHHHHHHHHhcCCCcCHHHHH
Q 030339 82 EMALACD--LRICGEAALLGLPETGLAIIPGAG---------------GTQRLPRL--VGKSVAKDIIFTGRKVSGKDAM 142 (179)
Q Consensus 82 ~l~~~~D--~~va~~~a~~~~p~~~~G~~p~~~---------------~~~~l~~~--~g~~~a~~l~l~g~~~~a~~a~ 142 (179)
.+++++| .|++.+++.|.++++..+..-... ....+.+. .......+++.....++++||+
T Consensus 84 ~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~lta~EA~ 163 (171)
T cd07017 84 LLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTDRDRYMSAEEAK 163 (171)
T ss_pred HHHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHHHHH
Confidence 9999999 799999999999887654432210 01112222 2345666777788899999999
Q ss_pred hcCccccc
Q 030339 143 SLGLVNYY 150 (179)
Q Consensus 143 ~~Glv~~v 150 (179)
++||||+|
T Consensus 164 e~GiiD~V 171 (171)
T cd07017 164 EYGLIDKI 171 (171)
T ss_pred HcCCCccC
Confidence 99999986
|
Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ |
| >PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.9e-09 Score=80.18 Aligned_cols=133 Identities=12% Similarity=0.111 Sum_probs=91.5
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhH
Q 030339 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 81 (179)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~ 81 (179)
.+++...|..++.++..+.|.+.=+ |.|+++ .....++..+...+.|+++.+.|.|.+.|.
T Consensus 49 ~~~i~~~L~~l~~~~~~~~I~l~IN-----SpGG~v--------------~~g~~I~d~i~~~~~~v~t~~~G~aaSaa~ 109 (207)
T PRK12553 49 ANDVMAQLLVLESIDPDRDITLYIN-----SPGGSV--------------TAGDAIYDTIQFIRPDVQTVCTGQAASAGA 109 (207)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEEe-----CCCCcH--------------HHHHHHHHHHHhcCCCcEEEEEeehhhHHH
Confidence 3567788888876543333333332 223333 223456677778888999999999999999
Q ss_pred HHHhhcC--EEEEcCCceeecccccc-c-ccCCc---------------chhhhhhccc--CHHHHHHHHhcCCCcCHHH
Q 030339 82 EMALACD--LRICGEAALLGLPETGL-A-IIPGA---------------GGTQRLPRLV--GKSVAKDIIFTGRKVSGKD 140 (179)
Q Consensus 82 ~l~~~~D--~~va~~~a~~~~p~~~~-G-~~p~~---------------~~~~~l~~~~--g~~~a~~l~l~g~~~~a~~ 140 (179)
.++++|| .|++.+++.|.++.+.. | ..... .....+.+.. ......+++-.+..++|+|
T Consensus 110 lI~~ag~~~~R~~~p~s~imiH~p~~~~~~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lta~E 189 (207)
T PRK12553 110 VLLAAGTPGKRFALPNARILIHQPSLGGGIRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRKDTDRDKWLTAEE 189 (207)
T ss_pred HHHHcCCcCcEEECCCchhhhcCccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCccccHHH
Confidence 9999999 59999999999987753 2 11000 0011223332 3566667777889999999
Q ss_pred HHhcCccccccCC
Q 030339 141 AMSLGLVNYYVPA 153 (179)
Q Consensus 141 a~~~Glv~~v~~~ 153 (179)
|+++||||+|++.
T Consensus 190 A~e~GliD~I~~~ 202 (207)
T PRK12553 190 AKDYGLVDQIITS 202 (207)
T ss_pred HHHcCCccEEcCc
Confidence 9999999999864
|
|
| >PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.8e-09 Score=77.61 Aligned_cols=99 Identities=12% Similarity=0.050 Sum_probs=71.1
Q ss_pred HHHHHHHhcCCCcEEEEEcccccchhHHHHhhcC--EEEEcCCceeecccccccccCCcch---------------hhhh
Q 030339 55 RSTFSFLEALPIPTIAVIDGAALGGGLEMALACD--LRICGEAALLGLPETGLAIIPGAGG---------------TQRL 117 (179)
Q Consensus 55 ~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D--~~va~~~a~~~~p~~~~G~~p~~~~---------------~~~l 117 (179)
..++..+...+.|+++.+.|.|.|.|..++++++ .|++.|++++.+..+.-+......- ...+
T Consensus 79 ~~I~d~i~~~~~~v~t~~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~ 158 (200)
T PRK00277 79 LAIYDTMQFIKPDVSTICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEIL 158 (200)
T ss_pred HHHHHHHHhcCCCEEEEEEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777889999999999999999999764 6899999988887664222111000 0123
Q ss_pred hcccC--HHHHHHHHhcCCCcCHHHHHhcCccccccCC
Q 030339 118 PRLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA 153 (179)
Q Consensus 118 ~~~~g--~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~ 153 (179)
.+..| .....+++.....++|+||+++||||+|++.
T Consensus 159 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~Ii~~ 196 (200)
T PRK00277 159 AEHTGQPLEKIEKDTDRDNFMSAEEAKEYGLIDEVLTK 196 (200)
T ss_pred HHHHCcCHHHHHHHhhCCccccHHHHHHcCCccEEeec
Confidence 33333 4566677777889999999999999999864
|
|
| >PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.1e-08 Score=77.03 Aligned_cols=104 Identities=13% Similarity=-0.010 Sum_probs=75.1
Q ss_pred HHHHHHHHhcCCCcEEEEEcccccchhHHHHhhcCE--EEEcCCceeecccccccccCCcch---------------hhh
Q 030339 54 LRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDL--RICGEAALLGLPETGLAIIPGAGG---------------TQR 116 (179)
Q Consensus 54 ~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D~--~va~~~a~~~~p~~~~G~~p~~~~---------------~~~ 116 (179)
...++..+...+.||++.+.|.|.+.|..++++||. |++.|++++-...+.-+......- ...
T Consensus 70 g~aI~d~i~~~~~~V~t~v~G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~ 149 (197)
T PRK14512 70 GFAIFNMIRFVKPKVFTIGVGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDI 149 (197)
T ss_pred HHHHHHHHHhCCCCEEEEEEeeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777889999999999999999999999986 999999998776654332211110 011
Q ss_pred hhccc--CHHHHHHHHhcCCCcCHHHHHhcCccccccCC-ChHH
Q 030339 117 LPRLV--GKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA-GQAQ 157 (179)
Q Consensus 117 l~~~~--g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~-~~~~ 157 (179)
+.+.. ......+++.....++++||+++||||+|++. +++.
T Consensus 150 ~a~~tg~~~~~i~~~~~~d~~lta~EA~~yGliD~I~~~~~~l~ 193 (197)
T PRK14512 150 IAKETGQELDKVEKDTDRDFWLDSSSAVKYGLVFEVVETRLELE 193 (197)
T ss_pred HHHHhCcCHHHHHHhhhcCcccCHHHHHHcCCccEeecCcHHhH
Confidence 22222 24556677777789999999999999999964 4443
|
|
| >PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.96 E-value=2e-09 Score=80.21 Aligned_cols=100 Identities=13% Similarity=0.157 Sum_probs=72.7
Q ss_pred HHHHHHHHhcCCCcEEEEEcccccchhHHHHhhcCE--EEEcCCceeecccccccccCCcchh---------------hh
Q 030339 54 LRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDL--RICGEAALLGLPETGLAIIPGAGGT---------------QR 116 (179)
Q Consensus 54 ~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D~--~va~~~a~~~~p~~~~G~~p~~~~~---------------~~ 116 (179)
...++..+..++.|+++.+.|.|.+.|..++++||. |++.+++.|.++++..+........ ..
T Consensus 63 g~~i~~~i~~~~~~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~ 142 (182)
T PF00574_consen 63 GLAIYDAIRSSKAPVTTVVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANI 142 (182)
T ss_dssp HHHHHHHHHHSSSEEEEEEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCeEEEEeCccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHH
Confidence 456777888999999999999999999999999999 8999999999998865544311111 11
Q ss_pred hhcc--cCHHHHHHHHhcCCCcCHHHHHhcCccccccCC
Q 030339 117 LPRL--VGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA 153 (179)
Q Consensus 117 l~~~--~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~ 153 (179)
+.+. .......+++-....++++||+++||||+|+..
T Consensus 143 ~~~~tg~~~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~~ 181 (182)
T PF00574_consen 143 YAERTGLSKEEIEELMDRDTWLSAEEALEYGIIDEIIES 181 (182)
T ss_dssp HHHHHTS-HHHHHHHCSSTEEEEHHHHHHHTSSSEEESS
T ss_pred HHHHhCCcHHHHHHHHhCCccccHHHHHHcCCCCEeccC
Confidence 1222 224555566666678899999999999999753
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A .... |
| >TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.7e-08 Score=85.46 Aligned_cols=84 Identities=18% Similarity=0.114 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhH
Q 030339 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 81 (179)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~ 81 (179)
+.++.+.|+.+.+||.|++|+|.-.+ +.|..+. ..+++++.+..+....||++|..++++ .+|+
T Consensus 78 l~~i~~~i~~A~~D~~IkgIvL~i~~----~~g~~~~-----------~~~ei~~ai~~fk~sgKpVvA~~~~~~-s~~Y 141 (584)
T TIGR00705 78 LFDIVNAIRQAADDRRIEGLVFDLSN----FSGWDSP-----------HLVEIGSALSEFKDSGKPVYAYGTNYS-QGQY 141 (584)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEccC----CCCCCHH-----------HHHHHHHHHHHHHhcCCeEEEEEcccc-chhh
Confidence 56899999999999999999999762 1133221 134566677778788999999988765 6789
Q ss_pred HHHhhcCEEEEcCCceeecc
Q 030339 82 EMALACDLRICGEAALLGLP 101 (179)
Q Consensus 82 ~l~~~~D~~va~~~a~~~~p 101 (179)
.|+++||.+++.|.+.+++.
T Consensus 142 ylAs~AD~I~~~p~G~v~~~ 161 (584)
T TIGR00705 142 YLASFADEIILNPMGSVDLH 161 (584)
T ss_pred hhhhhCCEEEECCCceEEee
Confidence 99999999999999887653
|
E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both. |
| >CHL00028 clpP ATP-dependent Clp protease proteolytic subunit | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.9e-08 Score=74.20 Aligned_cols=100 Identities=12% Similarity=0.053 Sum_probs=74.8
Q ss_pred HHHHHHHhcCCCcEEEEEcccccchhHHHHhhcC--EEEEcCCceeecccccccc-cCCcch---------------hhh
Q 030339 55 RSTFSFLEALPIPTIAVIDGAALGGGLEMALACD--LRICGEAALLGLPETGLAI-IPGAGG---------------TQR 116 (179)
Q Consensus 55 ~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D--~~va~~~a~~~~p~~~~G~-~p~~~~---------------~~~ 116 (179)
..++..+...+-|+.+.+.|.|.+.|..|++++| .|++.++++|-++.+..|. .....- ...
T Consensus 78 ~aIyd~m~~~~~~V~Tv~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ 157 (200)
T CHL00028 78 LAIYDTMQFVKPDVHTICLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRV 157 (200)
T ss_pred HHHHHHHHhcCCCEEEEEEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788999999999999999999999999 6999999999998875552 211100 112
Q ss_pred hhcccC--HHHHHHHHhcCCCcCHHHHHhcCccccccCCC
Q 030339 117 LPRLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG 154 (179)
Q Consensus 117 l~~~~g--~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~ 154 (179)
+.+..| .....+++.....++|+||+++||||+|+++.
T Consensus 158 ya~~Tg~~~e~i~~~~~r~~~lta~EA~eyGliD~I~~~~ 197 (200)
T CHL00028 158 YAQRTGKPLWVISEDMERDVFMSATEAKAYGIVDLVAVNN 197 (200)
T ss_pred HHHHHCcCHHHHHHHhhcCccCCHHHHHHcCCCcEEeecC
Confidence 222222 44556677777899999999999999998653
|
|
| >TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.5e-08 Score=73.01 Aligned_cols=131 Identities=9% Similarity=0.030 Sum_probs=85.6
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHH
Q 030339 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLE 82 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~ 82 (179)
+++...|..++.++..+-|.+.=+ |.|+|+ .....++..+...+.|+.+.+.|.|.+.|..
T Consensus 41 ~~ii~~L~~l~~~~~~~~i~l~In-----SpGG~v--------------~~g~~I~d~l~~~~~~v~t~~~G~AaSaasl 101 (191)
T TIGR00493 41 NLIVAQLLFLEAEDPEKDIYLYIN-----SPGGSI--------------TAGLAIYDTMQFIKPDVSTICIGQAASMGAF 101 (191)
T ss_pred HHHHHHHHHhhccCCCCCEEEEEE-----CCCCCH--------------HHHHHHHHHHHhcCCCEEEEEEEeeccHHHH
Confidence 455666666775543333444333 123333 2233455566677778888888999999999
Q ss_pred HHhhcC--EEEEcCCceeecccccccccCCcchh---------------hhhhccc--CHHHHHHHHhcCCCcCHHHHHh
Q 030339 83 MALACD--LRICGEAALLGLPETGLAIIPGAGGT---------------QRLPRLV--GKSVAKDIIFTGRKVSGKDAMS 143 (179)
Q Consensus 83 l~~~~D--~~va~~~a~~~~p~~~~G~~p~~~~~---------------~~l~~~~--g~~~a~~l~l~g~~~~a~~a~~ 143 (179)
+++++| .|++.|++.|.++.+.-|......-. ..+.+.. +.....+++.....++|+||++
T Consensus 102 I~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~~~~lta~EA~~ 181 (191)
T TIGR00493 102 LLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTERDFFMSAEEAKE 181 (191)
T ss_pred HHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCccCcHHHHHH
Confidence 998766 69999999999987753322111111 1133333 3466667777888999999999
Q ss_pred cCccccccC
Q 030339 144 LGLVNYYVP 152 (179)
Q Consensus 144 ~Glv~~v~~ 152 (179)
+||||+|+.
T Consensus 182 ~GliD~ii~ 190 (191)
T TIGR00493 182 YGLIDSVLT 190 (191)
T ss_pred cCCccEEec
Confidence 999999874
|
This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model. |
| >CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.8e-07 Score=74.88 Aligned_cols=116 Identities=16% Similarity=0.167 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcccccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHH
Q 030339 51 VNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDII 130 (179)
Q Consensus 51 ~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~ 130 (179)
...+.+.+..+.....|+|++|-|.+.|||......||++++.+++.++. +.|.+..+.++.. ..++.+..
T Consensus 178 ~~aiar~l~~~a~~~VP~IsVViGeggsGGAlal~~aD~V~m~e~a~~sV------isPEg~a~Il~~d---~~~a~~aA 248 (322)
T CHL00198 178 GEAIAVNLREMFSFEVPIICTIIGEGGSGGALGIGIGDSIMMLEYAVYTV------ATPEACAAILWKD---SKKSLDAA 248 (322)
T ss_pred HHHHHHHHHHHHcCCCCEEEEEeCcccHHHHHhhhcCCeEEEeCCeEEEe------cCHHHHHHHHhcc---hhhHHHHH
Confidence 45556666677889999999999999888877666799999999998873 2234444433332 23333322
Q ss_pred hcCCCcCHHHHHhcCccccccC-C-----Ch-------HHHHHHHHHHHHhccCHHHHH
Q 030339 131 FTGRKVSGKDAMSLGLVNYYVP-A-----GQ-------AQLKALEIAQEINQKVQSVFR 176 (179)
Q Consensus 131 l~g~~~~a~~a~~~Glv~~v~~-~-----~~-------~~~~a~~~a~~~~~~~~~a~~ 176 (179)
..-++++++++++|+||+|++ + .+ +.....+..+++.+.++..+.
T Consensus 249 -~~~~ita~dL~~~giiD~ii~Ep~ggah~~~~~~~~~l~~~~~~~l~~l~~~~~~~l~ 306 (322)
T CHL00198 249 -EALKITSEDLKVLGIIDEIIPEPIGGAQADPASASKILKKKLIRQLDFLKILSPSELK 306 (322)
T ss_pred -HHcCCCHHHHHhCCCCeEeccCCCCccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 445999999999999999996 3 11 223334455666666666554
|
|
| >PF01343 Peptidase_S49: Peptidase family S49 peptidase classification | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.4e-09 Score=76.34 Aligned_cols=43 Identities=23% Similarity=0.252 Sum_probs=33.1
Q ss_pred HhcCCCcEEEEEcccccchhHHHHhhcCEEEEcCCceeecccc
Q 030339 61 LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPET 103 (179)
Q Consensus 61 ~~~~~kp~ia~v~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~ 103 (179)
+.+..||++|.++|.+.++++.++++||.+++.|.+.++...+
T Consensus 2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv 44 (154)
T PF01343_consen 2 FKASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGV 44 (154)
T ss_dssp HHHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---E
T ss_pred ccccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeCh
Confidence 4578999999999999999999999999999999998887533
|
; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A. |
| >PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.9e-07 Score=71.93 Aligned_cols=116 Identities=16% Similarity=0.212 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcccccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHH
Q 030339 51 VNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDII 130 (179)
Q Consensus 51 ~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~ 130 (179)
...+.+.+..+...+.|+|++|-|.|.|||......||++++.+++.++. +.|.+.....+...--...+.+.
T Consensus 122 ~~~ia~~~~~~s~~~VP~IsVI~G~~~gGgA~a~~~~D~v~m~~~a~~~v------~~pe~~a~il~~~~~~a~~aa~~- 194 (256)
T PRK12319 122 GEAIARNLMEMSDLKVPIIAIIIGEGGSGGALALAVADQVWMLENTMYAV------LSPEGFASILWKDGSRATEAAEL- 194 (256)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEeCCcCcHHHHHhhcCCEEEEecCceEEE------cCHHHHHHHHhcCcccHHHHHHH-
Confidence 45566677778899999999999999999988888999999999998773 22333333233221111222223
Q ss_pred hcCCCcCHHHHHhcCccccccCCC--h-------HHHHHHHHHHHHhccCHHHHH
Q 030339 131 FTGRKVSGKDAMSLGLVNYYVPAG--Q-------AQLKALEIAQEINQKVQSVFR 176 (179)
Q Consensus 131 l~g~~~~a~~a~~~Glv~~v~~~~--~-------~~~~a~~~a~~~~~~~~~a~~ 176 (179)
..+++.++.+.|+||+|++.. + +.+...+..+++...++..+.
T Consensus 195 ---~~~~a~~l~~~g~iD~ii~e~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 246 (256)
T PRK12319 195 ---MKITAGELLEMGVVDKVIPEHGYFSSEIIDMIKKNLIEELAQLSQKPLEQLL 246 (256)
T ss_pred ---cCCCHHHHHHCCCCcEecCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 378999999999999999632 1 223345556666677776554
|
|
| >PRK10949 protease 4; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.3e-07 Score=82.28 Aligned_cols=84 Identities=14% Similarity=0.107 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhH
Q 030339 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 81 (179)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~ 81 (179)
+.++.++|+.+.+||.|++|||.-.+.. |... .-.+++++.+..+....||++|.-+ .+..+++
T Consensus 97 l~div~~i~~Aa~D~rIkgivL~i~s~g----G~~~-----------a~~~eI~~ai~~fk~sGKpVvA~~~-~~~s~~Y 160 (618)
T PRK10949 97 LFDIVNTIRQAKDDRNITGIVLDLKNFA----GADQ-----------PSMQYIGKALREFRDSGKPVYAVGD-SYSQGQY 160 (618)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEeCCCC----CccH-----------HHHHHHHHHHHHHHHhCCeEEEEec-Cccchhh
Confidence 4578999999999999999999987321 1111 1135567777788888999999644 4456789
Q ss_pred HHHhhcCEEEEcCCceeecc
Q 030339 82 EMALACDLRICGEAALLGLP 101 (179)
Q Consensus 82 ~l~~~~D~~va~~~a~~~~p 101 (179)
.|+++||.+++.|.+.+++.
T Consensus 161 yLASaAD~I~l~P~G~v~~~ 180 (618)
T PRK10949 161 YLASFANKIYLSPQGVVDLH 180 (618)
T ss_pred hhhhhCCEEEECCCceEEEe
Confidence 99999999999999887654
|
|
| >PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.75 E-value=2e-07 Score=70.09 Aligned_cols=100 Identities=14% Similarity=0.036 Sum_probs=73.3
Q ss_pred HHHHHHHhcCCCcEEEEEcccccchhHHHHhhcCE--EEEcCCceeecccccccccCCcc---------------hhhhh
Q 030339 55 RSTFSFLEALPIPTIAVIDGAALGGGLEMALACDL--RICGEAALLGLPETGLAIIPGAG---------------GTQRL 117 (179)
Q Consensus 55 ~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D~--~va~~~a~~~~p~~~~G~~p~~~---------------~~~~l 117 (179)
..++..+...+-|+.+.+.|.|.+.|..|++++|. |++.+++++..+.+.-|..-... ....+
T Consensus 73 ~aIyd~m~~~~~~V~t~~~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~y 152 (196)
T PRK12551 73 LGIFDTMQHVKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTEL 152 (196)
T ss_pred HHHHHHHHhcCCCEEEEEEEEehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 35666777888899999999999999999999985 89999999988877533221110 00112
Q ss_pred hcccC--HHHHHHHHhcCCCcCHHHHHhcCccccccCCC
Q 030339 118 PRLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG 154 (179)
Q Consensus 118 ~~~~g--~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~ 154 (179)
.++.| .....+++..-..++|+||+++||||+|++..
T Consensus 153 a~~tG~~~~~i~~~~~rd~~msa~EA~eyGliD~I~~~~ 191 (196)
T PRK12551 153 SERTGQPLERIQEDTDRDFFMSPSEAVEYGLIDLVIDKR 191 (196)
T ss_pred HHHHCcCHHHHHHHhhcCcCCCHHHHHHcCCCcEEeccC
Confidence 22223 34556667677799999999999999998753
|
|
| >PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=98.74 E-value=8.3e-07 Score=71.13 Aligned_cols=116 Identities=18% Similarity=0.202 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcccccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHH
Q 030339 51 VNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDII 130 (179)
Q Consensus 51 ~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~ 130 (179)
...+.+.+..+.....|+|++|-|.+.|||..-...||++++.+++.++ +.++.+....+-+. ...+.+..
T Consensus 175 ~~aia~~l~~~a~~~VP~IsVIiGeg~sGGAla~~~aD~v~m~~~A~~s-------visPEg~a~Il~~~--~~~a~~aa 245 (319)
T PRK05724 175 SEAIARNLREMARLKVPIICTVIGEGGSGGALAIGVGDRVLMLEYSTYS-------VISPEGCASILWKD--ASKAPEAA 245 (319)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEeCCccHHHHHHHhccCeeeeecCceEe-------ecCHHHHHHHHhcC--chhHHHHH
Confidence 4556677788889999999999999988887666679999999999877 44444444344322 12333333
Q ss_pred hcCCCcCHHHHHhcCccccccC-C-----Ch-------HHHHHHHHHHHHhccCHHHHH
Q 030339 131 FTGRKVSGKDAMSLGLVNYYVP-A-----GQ-------AQLKALEIAQEINQKVQSVFR 176 (179)
Q Consensus 131 l~g~~~~a~~a~~~Glv~~v~~-~-----~~-------~~~~a~~~a~~~~~~~~~a~~ 176 (179)
- ...+++.++++.|+||+|++ + .+ +.+...+..+++.+.++..+.
T Consensus 246 e-~~~ita~~l~~~g~iD~II~Ep~gga~~~~~~~~~~l~~~i~~~l~~l~~~~~~~l~ 303 (319)
T PRK05724 246 E-AMKITAQDLKELGIIDEIIPEPLGGAHRDPEAAAAALKEALLEALAELKGLSPEELL 303 (319)
T ss_pred H-HcCCCHHHHHHCCCceEeccCCCCCccCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 2 55799999999999999996 3 12 223334455666666666554
|
|
| >PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.5e-07 Score=70.73 Aligned_cols=99 Identities=8% Similarity=-0.017 Sum_probs=73.7
Q ss_pred HHHHHHHhcCCCcEEEEEcccccchhHHHHhhcCE--EEEcCCceeecccccccccCCcchh---------------hhh
Q 030339 55 RSTFSFLEALPIPTIAVIDGAALGGGLEMALACDL--RICGEAALLGLPETGLAIIPGAGGT---------------QRL 117 (179)
Q Consensus 55 ~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D~--~va~~~a~~~~p~~~~G~~p~~~~~---------------~~l 117 (179)
..++..+...+-||.+.+-|.|.+.|..|++++|. |++.|++++-.+.+.-|......-. ..+
T Consensus 102 laIyd~m~~~~~~V~tv~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iy 181 (221)
T PRK14514 102 LGIYDTMQFISSDVATICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTII 181 (221)
T ss_pred HHHHHHHHhcCCCEEEEEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 34566777888999999999999999999999996 9999999999888754432211100 112
Q ss_pred hcccC--HHHHHHHHhcCCCcCHHHHHhcCccccccCC
Q 030339 118 PRLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA 153 (179)
Q Consensus 118 ~~~~g--~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~ 153 (179)
.+..| .....+.+.....++|+||+++||||+|++.
T Consensus 182 a~~TG~~~e~I~~~~~rd~wmtA~EA~eyGliD~Vi~~ 219 (221)
T PRK14514 182 ADHSGTPFDKVWADSDRDYWMTAQEAKEYGMIDEVLIK 219 (221)
T ss_pred HHHHCcCHHHHHHHhhcCccCCHHHHHHcCCccEEeec
Confidence 22223 4555666777889999999999999999853
|
|
| >TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.4e-07 Score=71.03 Aligned_cols=116 Identities=18% Similarity=0.193 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcccccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHH
Q 030339 51 VNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDII 130 (179)
Q Consensus 51 ~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~ 130 (179)
...+.+.+..+.....|+|++|-|.|.|||..-...||++++.+++.++ +.++.+....+-+- ...+.+..
T Consensus 175 ~~aia~~l~a~s~~~VP~IsVViGeggsGGAla~~~aD~v~m~~~a~~s-------VisPEg~a~Il~kd--~~~a~~aa 245 (316)
T TIGR00513 175 SEAIARNLREMARLGVPVICTVIGEGGSGGALAIGVGDKVNMLEYSTYS-------VISPEGCAAILWKD--ASKAPKAA 245 (316)
T ss_pred HHHHHHHHHHHHcCCCCEEEEEecccccHHHhhhccCCEEEEecCceEE-------ecCHHHHHHHhccc--hhhHHHHH
Confidence 4556667777889999999999999988887666679999999999877 44333333333221 12222222
Q ss_pred hcCCCcCHHHHHhcCccccccC-C-----Ch-------HHHHHHHHHHHHhccCHHHHH
Q 030339 131 FTGRKVSGKDAMSLGLVNYYVP-A-----GQ-------AQLKALEIAQEINQKVQSVFR 176 (179)
Q Consensus 131 l~g~~~~a~~a~~~Glv~~v~~-~-----~~-------~~~~a~~~a~~~~~~~~~a~~ 176 (179)
.-..+++.++.+.|+||.|++ + .+ +.+...+..+++.+.++..+.
T Consensus 246 -e~~~~ta~~l~~~G~iD~II~ep~~ga~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~ 303 (316)
T TIGR00513 246 -EAMKITAPDLKELGLIDSIIPEPLGGAHRNPLAAAASLKEQLLADLATLDQLSTEELK 303 (316)
T ss_pred -HHccCCHHHHHHCCCCeEeccCCCCccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 235789999999999999996 3 11 223344556666667766554
|
The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta. |
| >KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2e-09 Score=86.46 Aligned_cols=158 Identities=18% Similarity=0.101 Sum_probs=121.6
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchh
Q 030339 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G 80 (179)
..+|..-|+.+..+..+++.++|+...+.|++|.|..+. .....-......++++++...++++.|+.+++||++.-++
T Consensus 84 k~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~~~tS~~~iA~Ain~~~~~gk 163 (380)
T KOG1683|consen 84 KHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILALYTSKLTIATAINGGSPAGK 163 (380)
T ss_pred HHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHHhcCCCchHHHHHHhcccccCC
Confidence 356777788888998999999999878899999999887 4445556666778889999999999999999999998888
Q ss_pred --HHHHhhcCEEEEcCC--ceeecccccccc-cCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCC--
Q 030339 81 --LEMALACDLRICGEA--ALLGLPETGLAI-IPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA-- 153 (179)
Q Consensus 81 --~~l~~~~D~~va~~~--a~~~~p~~~~G~-~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~-- 153 (179)
+.++-+|+|++...- -..+..+...++ .|+. ....+...+|...+..-+.-+.-++-.|+.+-|+++++.+.
T Consensus 164 ~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~-~iD~~~t~fGf~~g~~~L~d~~gfdv~eal~~gl~~~~~~r~~ 242 (380)
T KOG1683|consen 164 LPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPW-LIDSLITKFGFRVGERALADGVGFDVAEALAVGLGDEIGPRIE 242 (380)
T ss_pred ccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHH-HHHHHHHhcCccccHHHHhhccCccHHHHHhhccchhccchhH
Confidence 889999999999844 334667776663 3332 23333344555555566667789999999999999999884
Q ss_pred ChHHHHH
Q 030339 154 GQAQLKA 160 (179)
Q Consensus 154 ~~~~~~a 160 (179)
+++.+..
T Consensus 243 eel~~~~ 249 (380)
T KOG1683|consen 243 EELLEKG 249 (380)
T ss_pred HHHHHHH
Confidence 4444333
|
|
| >PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1e-06 Score=72.50 Aligned_cols=116 Identities=16% Similarity=0.167 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcccccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHH
Q 030339 51 VNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDII 130 (179)
Q Consensus 51 ~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~ 130 (179)
...+.+.+..+.....|+|++|-|.+.|||..-...||+++|.+++.++. +-|.+..+.++....-...+.+
T Consensus 245 a~aIAr~l~ams~l~VPiISVViGeGgSGGAlalg~aD~VlMle~A~ysV------isPEgaAsILwkd~~~A~eAAe-- 316 (431)
T PLN03230 245 GEAIAFNLREMFGLRVPIIATVIGEGGSGGALAIGCGNRMLMMENAVYYV------ASPEACAAILWKSAAAAPKAAE-- 316 (431)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEeCCCCcHHHHHhhcCCEEEEecCCEEEe------cCHHHHHHHHhccccchHHHHH--
Confidence 45566677778899999999999999777766666899999999987763 2234444433333222222223
Q ss_pred hcCCCcCHHHHHhcCccccccC-C-----Ch-------HHHHHHHHHHHHhccCHHHHH
Q 030339 131 FTGRKVSGKDAMSLGLVNYYVP-A-----GQ-------AQLKALEIAQEINQKVQSVFR 176 (179)
Q Consensus 131 l~g~~~~a~~a~~~Glv~~v~~-~-----~~-------~~~~a~~~a~~~~~~~~~a~~ 176 (179)
...+++++++++|+||+|++ + .+ +.....+..+++.+.++..+.
T Consensus 317 --alkitA~dL~~~GiID~II~Ep~ggAh~d~~~~~~~l~~~i~~~l~~L~~~~~~~l~ 373 (431)
T PLN03230 317 --ALRITAAELVKLGVVDEIVPEPLGGAHSDPLQASKNIKEVILRHMKELMKMDPEELL 373 (431)
T ss_pred --HcCCCHHHHHhCCCCeEeccCCCCCcccCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 34999999999999999996 3 12 223334455666677766554
|
|
| >PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.3e-06 Score=76.02 Aligned_cols=117 Identities=12% Similarity=0.146 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEcccccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHH
Q 030339 50 YVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDI 129 (179)
Q Consensus 50 ~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l 129 (179)
....+.+.+..+.....|+|++|-|.|.|||......||+++|.+++.++. +-|.++.+.++...--...|.
T Consensus 265 q~~aIArnl~amasl~VP~ISVViGeggSGGAlA~g~aD~VlMle~A~~sV------isPEgaAsILwkd~~~A~eAA-- 336 (762)
T PLN03229 265 QGEAIAHNLRTMFGLKVPIVSIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKAAPKAA-- 336 (762)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhcCCEEEEecCCeEEe------cCHHHHHHHHhcCcccHHHHH--
Confidence 345566677778899999999999999999988888899999999987662 224444443333322222222
Q ss_pred HhcCCCcCHHHHHhcCccccccC-C-----Ch-------HHHHHHHHHHHHhccCHHHHH
Q 030339 130 IFTGRKVSGKDAMSLGLVNYYVP-A-----GQ-------AQLKALEIAQEINQKVQSVFR 176 (179)
Q Consensus 130 ~l~g~~~~a~~a~~~Glv~~v~~-~-----~~-------~~~~a~~~a~~~~~~~~~a~~ 176 (179)
..-.+++++.+++|+||+|+| + .+ +.........++...++..+.
T Consensus 337 --e~lkiTa~dL~~lGiiD~IIpEp~ggAh~d~~~~~~~l~~~i~~~L~~l~~~~~~~l~ 394 (762)
T PLN03229 337 --EKLRITAQELCRLQIADGIIPEPLGGAHADPSWTSQQIKIAINENMDELGKMDTEELL 394 (762)
T ss_pred --HHcCCCHHHHHhCCCCeeeccCCCCccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 445999999999999999996 3 11 222334445556666666554
|
|
| >PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.3e-07 Score=68.03 Aligned_cols=98 Identities=12% Similarity=0.128 Sum_probs=74.5
Q ss_pred HHHHHHHhcCCCcEEEEEcccccchhHHHHhhcCE--EEEcCCceeecccccccccCCcchh-----------------h
Q 030339 55 RSTFSFLEALPIPTIAVIDGAALGGGLEMALACDL--RICGEAALLGLPETGLAIIPGAGGT-----------------Q 115 (179)
Q Consensus 55 ~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D~--~va~~~a~~~~p~~~~G~~p~~~~~-----------------~ 115 (179)
..++..+...+-||.+.+.|.|.+.+..|++++|- |++.|++++-.+.+.-|.. +... .
T Consensus 75 laIyd~m~~~~~~V~Ti~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~--G~a~di~~~a~el~~~~~~l~~ 152 (201)
T PRK14513 75 LAIYDTMRYIKAPVSTICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFR--GNTPDLEVQAKEVLFLRDTLVD 152 (201)
T ss_pred HHHHHHHHhcCCCEEEEEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCC--CCHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888999999999999999999999996 9999999998887754432 1111 1
Q ss_pred hhhcccC--HHHHHHHHhcCCCcCHHHHHhcCccccccCCC
Q 030339 116 RLPRLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG 154 (179)
Q Consensus 116 ~l~~~~g--~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~ 154 (179)
.+.+..| .....+++-....++|+||+++||||+|+++.
T Consensus 153 iya~~Tg~~~~~I~~~~~rd~~msa~EA~eyGliD~I~~~~ 193 (201)
T PRK14513 153 IYHRHTDLPHEKLLRDMERDYFMSPEEAKAYGLIDSVIEPT 193 (201)
T ss_pred HHHHHHCcCHHHHHHHhccCcccCHHHHHHcCCCcEEeccC
Confidence 1222333 45556677677799999999999999998653
|
|
| >PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily | Back alignment and domain information |
|---|
Probab=98.49 E-value=1e-06 Score=68.61 Aligned_cols=93 Identities=18% Similarity=0.220 Sum_probs=70.3
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHH
Q 030339 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLE 82 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~ 82 (179)
+++.++++....+..+ .++|...|| ++ +...++.+.+.+++.|+.+.|+.+|+++|..
T Consensus 78 e~v~raI~~~~~~~~I-dLii~TpGG-------~v--------------~AA~~I~~~l~~~~~~v~v~VP~~A~SAGTl 135 (285)
T PF01972_consen 78 EFVLRAIREAPKDKPI-DLIIHTPGG-------LV--------------DAAEQIARALREHPAKVTVIVPHYAMSAGTL 135 (285)
T ss_pred HHHHHHHHhcCCCCce-EEEEECCCC-------cH--------------HHHHHHHHHHHhCCCCEEEEECcccccHHHH
Confidence 4566677776666554 344444422 22 3345566778889999999999999999999
Q ss_pred HHhhcCEEEEcCCceeecccccccccCCcchhhhh
Q 030339 83 MALACDLRICGEAALLGLPETGLAIIPGAGGTQRL 117 (179)
Q Consensus 83 l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l 117 (179)
++++||.++|.+++.+|.-++.+|..|.......+
T Consensus 136 IALaADeIvM~p~a~LGpiDPqi~~~pA~sil~~~ 170 (285)
T PF01972_consen 136 IALAADEIVMGPGAVLGPIDPQIGQYPAASILKAV 170 (285)
T ss_pred HHHhCCeEEECCCCccCCCCccccCCChHHHHHHH
Confidence 99999999999999999999999988865444333
|
The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane |
| >COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.3e-06 Score=64.06 Aligned_cols=99 Identities=13% Similarity=0.108 Sum_probs=70.2
Q ss_pred HHHHHHhcCCCcEEEEEcccccchhHHHHhhcCEE--EEcCCceeecccccccccCCcchh---------------hhhh
Q 030339 56 STFSFLEALPIPTIAVIDGAALGGGLEMALACDLR--ICGEAALLGLPETGLAIIPGAGGT---------------QRLP 118 (179)
Q Consensus 56 ~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D~~--va~~~a~~~~p~~~~G~~p~~~~~---------------~~l~ 118 (179)
..+..+...+.||...+-|.+.+.|..|++++|.. ++.|++++-.+.+.-|+.-...=. ..+.
T Consensus 76 AIydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~gg~~G~a~Di~i~A~ei~~~~~~l~~i~a 155 (200)
T COG0740 76 AIYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPSGGAQGQASDIEIHAREILKIKERLNRIYA 155 (200)
T ss_pred HHHHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCCccCccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677789999999999999999999999999995 999999988877763332111000 0111
Q ss_pred cccC--HHHHHHHHhcCCCcCHHHHHhcCccccccCCC
Q 030339 119 RLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG 154 (179)
Q Consensus 119 ~~~g--~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~ 154 (179)
+.-| .....+..-....++|+||+++||||+|.+..
T Consensus 156 ~~TGq~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~ 193 (200)
T COG0740 156 EHTGQTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESR 193 (200)
T ss_pred HHcCCCHHHHHHhhcccccCCHHHHHHcCCcceecccc
Confidence 1122 22233344456688999999999999998654
|
|
| >TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.1e-05 Score=60.94 Aligned_cols=98 Identities=17% Similarity=0.123 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHh---cCCCcEEEEEcccccchhHH-HHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHH
Q 030339 49 FYVNTLRSTFSFLE---ALPIPTIAVIDGAALGGGLE-MALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKS 124 (179)
Q Consensus 49 ~~~~~~~~~~~~~~---~~~kp~ia~v~G~a~g~G~~-l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~ 124 (179)
.....+.++...+. ..+.|+|+.|-|.++|||+. +.+.+|.++|.|++.++ +.++.+....+.+-. .
T Consensus 88 G~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~A~i~-------vm~~e~aa~I~~~~~--~ 158 (238)
T TIGR03134 88 GINQALAHLAKALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPGAMVH-------VMDLESMARVTKRSV--E 158 (238)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcCCcEEE-------ecCHHHHHHHHccCH--h
Confidence 33444555555554 55699999999999998855 44458999998888766 444444444443322 3
Q ss_pred HHHHHHhcC--CCcCHHHHHhcCccccccCCCh
Q 030339 125 VAKDIIFTG--RKVSGKDAMSLGLVNYYVPAGQ 155 (179)
Q Consensus 125 ~a~~l~l~g--~~~~a~~a~~~Glv~~v~~~~~ 155 (179)
...++.-+- ...+...+.++|+||+|+++.+
T Consensus 159 ~~~e~a~~~~~~a~~~~~~~~~G~vd~vi~~~~ 191 (238)
T TIGR03134 159 ELEALAKSSPVFAPGIENFVKLGGVHALLDVAD 191 (238)
T ss_pred HHHHHHHhhhhhccCHHHHHhCCCccEEeCCCC
Confidence 333443322 2456778999999999997544
|
Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity. |
| >COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.34 E-value=6.8e-06 Score=67.96 Aligned_cols=131 Identities=15% Similarity=0.238 Sum_probs=94.9
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEc---ccccc
Q 030339 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVID---GAALG 78 (179)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~---G~a~g 78 (179)
.+.+.+.++.++++.. .+||+.=+.++.+ .+.+++.++.|.+.+.|++..|. ++|.+
T Consensus 42 ~~~l~r~l~~A~~~~a-~~vvl~ldTPGGl-------------------~~sm~~iv~~i~~s~vPV~~yv~p~ga~AaS 101 (436)
T COG1030 42 ADYLQRALQSAEEENA-AAVVLELDTPGGL-------------------LDSMRQIVRAILNSPVPVIGYVVPDGARAAS 101 (436)
T ss_pred HHHHHHHHHHHHhCCC-cEEEEEecCCCch-------------------HHHHHHHHHHHHcCCCCEEEEEcCCCcchhc
Confidence 3567888888888763 2444433324322 46788899999999999999884 57999
Q ss_pred hhHHHHhhcCEEEEcCCceeecccccccc---cCCcchhhh-------hhcc--cCHHHHHHHHhcCCCcCHHHHHhcCc
Q 030339 79 GGLEMALACDLRICGEAALLGLPETGLAI---IPGAGGTQR-------LPRL--VGKSVAKDIIFTGRKVSGKDAMSLGL 146 (179)
Q Consensus 79 ~G~~l~~~~D~~va~~~a~~~~p~~~~G~---~p~~~~~~~-------l~~~--~g~~~a~~l~l~g~~~~a~~a~~~Gl 146 (179)
.|..++++||+.+|.|.+.++...+-.+- .+....+.. +.+. -+...+.+++.....++++||.+.|+
T Consensus 102 AGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~~gRN~~~ae~~v~~~~~l~a~eA~~~~v 181 (436)
T COG1030 102 AGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEERGRNPTWAERFVTENLSLTAEEALRQGV 181 (436)
T ss_pred hhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHHHHHHHcCCChHHHHHHhhhccCCChhHHHhcCc
Confidence 99999999999999999999987664332 111110111 1111 13677889999999999999999999
Q ss_pred cccccC
Q 030339 147 VNYYVP 152 (179)
Q Consensus 147 v~~v~~ 152 (179)
+|-+..
T Consensus 182 id~iA~ 187 (436)
T COG1030 182 IDLIAR 187 (436)
T ss_pred cccccC
Confidence 998864
|
|
| >TIGR03133 malonate_beta malonate decarboxylase, beta subunit | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.6e-05 Score=62.73 Aligned_cols=81 Identities=27% Similarity=0.321 Sum_probs=55.0
Q ss_pred HhcCCCcEEEEEccc--ccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCH--HHHHHHHhcCCCc
Q 030339 61 LEALPIPTIAVIDGA--ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGK--SVAKDIIFTGRKV 136 (179)
Q Consensus 61 ~~~~~kp~ia~v~G~--a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~--~~a~~l~l~g~~~ 136 (179)
+... .|+|+.+.|+ |+||+..++.+||++|+++++++++..+. ......|. -...+--+..+.+
T Consensus 133 ls~~-vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~aGP~-----------VIe~~~G~e~~~~~d~~l~~~~l 200 (274)
T TIGR03133 133 ARAA-VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLSGPE-----------VIEQEAGVEEFDSRDRALVWRTT 200 (274)
T ss_pred HhCC-CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEeccCHH-----------HHHHhcCCCccCHHHhccccccc
Confidence 3344 9999999999 89999999999999999999887764331 11111110 0111222233445
Q ss_pred CHHHHHhcCccccccCC
Q 030339 137 SGKDAMSLGLVNYYVPA 153 (179)
Q Consensus 137 ~a~~a~~~Glv~~v~~~ 153 (179)
.+......|++|.++++
T Consensus 201 GG~~~~~sG~~D~~v~d 217 (274)
T TIGR03133 201 GGKHRFLSGDADVLVED 217 (274)
T ss_pred chHhHhhcccceEEeCC
Confidence 56677889999999976
|
Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase. |
| >PRK12552 ATP-dependent Clp protease-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.5e-05 Score=60.94 Aligned_cols=97 Identities=15% Similarity=0.087 Sum_probs=70.7
Q ss_pred HHHHHHHhcCCCcEEEEEcccccchhHHHHhhcCE--EEEcCCceeecccccccccCCcchh-----------------h
Q 030339 55 RSTFSFLEALPIPTIAVIDGAALGGGLEMALACDL--RICGEAALLGLPETGLAIIPGAGGT-----------------Q 115 (179)
Q Consensus 55 ~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D~--~va~~~a~~~~p~~~~G~~p~~~~~-----------------~ 115 (179)
..++..+...+-|+.+.+-|.|.+.+..|++++|- |++.+++++-++.+.-|.. +... .
T Consensus 97 laIyD~m~~ik~~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~--G~A~di~~~a~el~~~r~~l~~ 174 (222)
T PRK12552 97 FAICDTMRYIKPPVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGAR--GQATDIQIRAKEVLHNKRTMLE 174 (222)
T ss_pred HHHHHHHHhcCCCeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccc--cCHHHHHHHHHHHHHHHHHHHH
Confidence 34566667778889999999999999999999996 8999999998887754432 1111 1
Q ss_pred hhhcccC--HHHHHHHHhcCCCcCHHHHHhcCccccccCC
Q 030339 116 RLPRLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA 153 (179)
Q Consensus 116 ~l~~~~g--~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~ 153 (179)
.+.+..| .....+.+-.-..++|+||+++||||+|+++
T Consensus 175 iya~~TG~~~e~I~~d~~rd~wmsA~EA~eyGliD~Ii~~ 214 (222)
T PRK12552 175 ILSRNTGQTVEKLSKDTDRMFYLTPQEAKEYGLIDRVLES 214 (222)
T ss_pred HHHHHHCCCHHHHHHHhcCCCcCCHHHHHHcCCCcEEecc
Confidence 1122222 3444455556678999999999999999864
|
|
| >PRK05654 acetyl-CoA carboxylase subunit beta; Validated | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.6e-05 Score=60.74 Aligned_cols=140 Identities=16% Similarity=0.216 Sum_probs=86.8
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHH--HHHHHHHHHHhcCCCcEEEEEcccccchh
Q 030339 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYV--NTLRSTFSFLEALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~kp~ia~v~G~a~g~G 80 (179)
+.+.++++.+.+. .+-+|.+..+ + |.... +....+. ......+.++.....|.|+++.|+|+||+
T Consensus 143 eKi~r~~e~A~~~-~lPlV~l~ds-g-----Garmq------Egi~sL~~~ak~~~a~~~~~~a~vP~IsVv~gpt~GG~ 209 (292)
T PRK05654 143 EKIVRAVERAIEE-KCPLVIFSAS-G-----GARMQ------EGLLSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGV 209 (292)
T ss_pred HHHHHHHHHHHHc-CCCEEEEEcC-C-----Ccchh------hhhhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCCchHH
Confidence 3456666666665 4556666654 3 22221 1111111 12222344456678999999999999996
Q ss_pred H-HHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 81 L-EMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 81 ~-~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
. ..++.+|++++.+++.+++...+ .+.+.++.. + .-+.-+++-+.+.|+||.|+++.++...
T Consensus 210 aas~a~~~D~iia~p~A~ig~aGpr-----------vie~~~~e~----l--pe~~~~ae~~~~~G~vD~Vv~~~e~r~~ 272 (292)
T PRK05654 210 SASFAMLGDIIIAEPKALIGFAGPR-----------VIEQTVREK----L--PEGFQRAEFLLEHGAIDMIVHRRELRDT 272 (292)
T ss_pred HHHHHHcCCEEEEecCcEEEecCHH-----------HHHhhhhhh----h--hhhhcCHHHHHhCCCCcEEECHHHHHHH
Confidence 4 46778999999999887764432 111111111 1 1112256667789999999999999988
Q ss_pred HHHHHHHHhccCH
Q 030339 160 ALEIAQEINQKVQ 172 (179)
Q Consensus 160 a~~~a~~~~~~~~ 172 (179)
..++.+.+..+++
T Consensus 273 l~~~L~~~~~~~~ 285 (292)
T PRK05654 273 LASLLALHTKQPA 285 (292)
T ss_pred HHHHHHHHhcCCC
Confidence 8888877765543
|
|
| >TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit | Back alignment and domain information |
|---|
Probab=98.20 E-value=6.5e-05 Score=59.70 Aligned_cols=140 Identities=14% Similarity=0.227 Sum_probs=85.5
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchh-H
Q 030339 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG-L 81 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G-~ 81 (179)
+.+.++++.+.+. .+-+|.+..+ ++. -+.+ ........ ......+.++.....|.|+++.|+|+||+ +
T Consensus 142 eKi~r~~e~A~~~-~lPlV~l~dS-gGa-----RmqE---g~~sL~~~-ak~~~~~~~~~~~~vP~IsVv~gpt~GG~aa 210 (285)
T TIGR00515 142 EKFVRAIEKALED-NCPLIIFSAS-GGA-----RMQE---ALLSLMQM-AKTSAALAKMSERGLPYISVLTDPTTGGVSA 210 (285)
T ss_pred HHHHHHHHHHHHc-CCCEEEEEcC-CCc-----cccc---chhHHHhH-HHHHHHHHHHHcCCCCEEEEEeCCcchHHHH
Confidence 3456666666655 4456666555 222 1111 01111111 11222344566678999999999999996 4
Q ss_pred HHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHHHH
Q 030339 82 EMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKAL 161 (179)
Q Consensus 82 ~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~a~ 161 (179)
.+++.+|++++.+++.+++...+. +.+.++.. + .-+.-+++-+.+.|+||.|+++.++.....
T Consensus 211 s~a~~~D~iia~p~A~ig~aGprV-----------ie~ti~e~-----l-pe~~q~ae~~~~~G~vD~iv~~~~~r~~l~ 273 (285)
T TIGR00515 211 SFAMLGDLNIAEPKALIGFAGPRV-----------IEQTVREK-----L-PEGFQTSEFLLEHGAIDMIVHRPEMKKTLA 273 (285)
T ss_pred HHHhCCCEEEEECCeEEEcCCHHH-----------HHHHhcCc-----c-chhcCCHHHHHhCCCCcEEECcHHHHHHHH
Confidence 467899999999999888754431 11111110 1 111235566778999999999999988887
Q ss_pred HHHHHHhcc
Q 030339 162 EIAQEINQK 170 (179)
Q Consensus 162 ~~a~~~~~~ 170 (179)
++.+.+.++
T Consensus 274 ~~L~~~~~~ 282 (285)
T TIGR00515 274 SLLAKLQNL 282 (285)
T ss_pred HHHHHHhhC
Confidence 777765443
|
The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta. |
| >PRK07189 malonate decarboxylase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.7e-05 Score=61.36 Aligned_cols=41 Identities=37% Similarity=0.549 Sum_probs=35.8
Q ss_pred HhcCCCcEEEEEccc--ccchhHHHHhhcCEEEEcCCceeeccc
Q 030339 61 LEALPIPTIAVIDGA--ALGGGLEMALACDLRICGEAALLGLPE 102 (179)
Q Consensus 61 ~~~~~kp~ia~v~G~--a~g~G~~l~~~~D~~va~~~a~~~~p~ 102 (179)
+... .|+|+.+.|. |+||+...+.+||++|+++++.+++..
T Consensus 142 ls~~-VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~iglaG 184 (301)
T PRK07189 142 LRAA-VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGLSG 184 (301)
T ss_pred HhCC-CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEeccC
Confidence 3444 9999999999 999999999999999999998877643
|
|
| >CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00026 Score=56.35 Aligned_cols=136 Identities=16% Similarity=0.183 Sum_probs=78.6
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHH-HhcCCCcEEEEEcccccchhH
Q 030339 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSF-LEALPIPTIAVIDGAALGGGL 81 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~kp~ia~v~G~a~g~G~ 81 (179)
+.+.++++.+.+.. +-+|++..++ |..+.+- ......+.+. ...+.+ ...-..|.|+++.|+|.||+.
T Consensus 155 eKi~ra~e~A~~~r-lPlV~l~~SG------GARmQEg---~~sL~qmak~-saa~~~~~~~~~vP~Isvl~gPt~GG~a 223 (296)
T CHL00174 155 EKITRLIEYATNES-LPLIIVCASG------GARMQEG---SLSLMQMAKI-SSALYDYQSNKKLFYISILTSPTTGGVT 223 (296)
T ss_pred HHHHHHHHHHHHcC-CCEEEEECCC------Ccccccc---chhhhhhHHH-HHHHHHHHHcCCCCEEEEEcCCCchHHH
Confidence 35666777776653 4566666552 2222211 1111111111 111223 225678999999999999986
Q ss_pred H-HHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHHH
Q 030339 82 E-MALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKA 160 (179)
Q Consensus 82 ~-l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~a 160 (179)
. +++.||++++.+++.+++..++. +- ....+.++ -.--+++-.++.|+||.+++..++.+..
T Consensus 224 as~a~l~Diiiae~~A~IgfAGPrV--Ie-----~t~ge~lp----------e~fq~ae~l~~~G~vD~iV~r~~lr~~l 286 (296)
T CHL00174 224 ASFGMLGDIIIAEPNAYIAFAGKRV--IE-----QTLNKTVP----------EGSQAAEYLFDKGLFDLIVPRNLLKGVL 286 (296)
T ss_pred HHHHHcccEEEEeCCeEEEeeCHHH--HH-----HhcCCcCC----------cccccHHHHHhCcCceEEEcHHHHHHHH
Confidence 5 57779999998888877654321 00 00001111 0112466678899999999988888776
Q ss_pred HHHHHH
Q 030339 161 LEIAQE 166 (179)
Q Consensus 161 ~~~a~~ 166 (179)
..+.+-
T Consensus 287 ~~ll~~ 292 (296)
T CHL00174 287 SELFQL 292 (296)
T ss_pred HHHHHh
Confidence 665543
|
|
| >COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.04 E-value=2e-05 Score=61.80 Aligned_cols=91 Identities=20% Similarity=0.297 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhcCCCcEEEEEcccccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHh
Q 030339 52 NTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIF 131 (179)
Q Consensus 52 ~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l 131 (179)
+.+.+-+..+.+++.|+||.|-|---+||.-=...+|.++|-++++++. +.|.+..+.++.. .+++.+..
T Consensus 175 eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySV------isPEG~AsILWkD---~~ka~eAA- 244 (317)
T COG0825 175 EAIARNLREMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSV------ISPEGCASILWKD---ASKAKEAA- 244 (317)
T ss_pred HHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeee------cChhhhhhhhhcC---hhhhHHHH-
Confidence 3445556667899999999999999888888788899999999999983 4455555544443 23333333
Q ss_pred cCCCcCHHHHHhcCccccccC
Q 030339 132 TGRKVSGKDAMSLGLVNYYVP 152 (179)
Q Consensus 132 ~g~~~~a~~a~~~Glv~~v~~ 152 (179)
..-.+++++.+++|+||.|++
T Consensus 245 e~mkita~dLk~lgiID~II~ 265 (317)
T COG0825 245 EAMKITAHDLKELGIIDGIIP 265 (317)
T ss_pred HHcCCCHHHHHhCCCcceecc
Confidence 445899999999999999996
|
|
| >TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00036 Score=59.94 Aligned_cols=149 Identities=14% Similarity=0.175 Sum_probs=90.3
Q ss_pred HHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHHH
Q 030339 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEM 83 (179)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l 83 (179)
...+.++.+++. .+-+|.|.-. + .|..|.+ .+.........+++..+.....|.|+.|-|.++|+|+.-
T Consensus 338 K~~r~i~~a~~~-~lPlV~lvDs-~-G~~~g~~--------~E~~g~~~~~a~~~~a~~~~~vP~isvi~g~~~Gga~~a 406 (512)
T TIGR01117 338 KIARFIRFCDAF-NIPIVTFVDV-P-GFLPGVN--------QEYGGIIRHGAKVLYAYSEATVPKVTIITRKAYGGAYLA 406 (512)
T ss_pred HHHHHHHHHHHc-CCCEEEEEeC-c-CccccHH--------HHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCchHHHHH
Confidence 345556666554 4455555544 2 2554432 223334556667778888899999999999998886444
Q ss_pred Hh----hcCEEEEcCCceeecccccccccCCcchhhhh-hcccC----HHHHHH-HH--hcCCCcCHHHHHhcCcccccc
Q 030339 84 AL----ACDLRICGEAALLGLPETGLAIIPGAGGTQRL-PRLVG----KSVAKD-II--FTGRKVSGKDAMSLGLVNYYV 151 (179)
Q Consensus 84 ~~----~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l-~~~~g----~~~a~~-l~--l~g~~~~a~~a~~~Glv~~v~ 151 (179)
.. .+|+++++|++.+++ .++.+....+ .+.+. ...+++ .+ ..-+..++..+.+.|+||.|+
T Consensus 407 m~~~~~~~d~~~a~p~a~~~v-------~~pe~a~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~g~vD~VI 479 (512)
T TIGR01117 407 MCSKHLGADQVYAWPTAEIAV-------MGPAGAANIIFRKDIKEAKDPAATRKQKIAEYREEFANPYKAAARGYVDDVI 479 (512)
T ss_pred hccccCCCCEEEEcCCCeEee-------cCHHHHHHHHhhhhcccccCHHHHHHHHHHHHHHhhcCHHHHHhcCCCCeeE
Confidence 33 289999999988774 3222222222 21111 111111 11 112245788999999999999
Q ss_pred CCChHHHHHHHHHHHHhcc
Q 030339 152 PAGQAQLKALEIAQEINQK 170 (179)
Q Consensus 152 ~~~~~~~~a~~~a~~~~~~ 170 (179)
++.+.........+.+.+.
T Consensus 480 ~P~~tR~~l~~~l~~~~~~ 498 (512)
T TIGR01117 480 EPKQTRPKIVNALAMLESK 498 (512)
T ss_pred ChHHHHHHHHHHHHHHhcC
Confidence 9998887766666555443
|
This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane. |
| >COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00024 Score=55.46 Aligned_cols=140 Identities=16% Similarity=0.244 Sum_probs=96.2
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHH--HHHHHHHHHHHhcCCCcEEEEEcccccch-
Q 030339 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFY--VNTLRSTFSFLEALPIPTIAVIDGAALGG- 79 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~kp~ia~v~G~a~g~- 79 (179)
+.+.++++.+-++ .+.+|+++.+|| .-. ++....+ +......+.++.....|.|+.+..+..||
T Consensus 144 eki~ra~E~A~e~-k~P~v~f~aSGG------ARM------QEg~lSLMQMaktsaAl~~l~ea~lpyIsVLt~PTtGGV 210 (294)
T COG0777 144 EKITRAIERAIED-KLPLVLFSASGG------ARM------QEGILSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGV 210 (294)
T ss_pred HHHHHHHHHHHHh-CCCEEEEecCcc------hhH------hHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCCccch
Confidence 3567788888776 467888887732 211 1222211 22344567778889999999999999888
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
...+++..|+.++-|.+.++|...+. .-+...+.++.. --+++-.++.|+||.|++..|+...
T Consensus 211 sASfA~lGDi~iAEP~AlIGFAGpRV-------IEQTire~LPeg----------fQ~aEfLlehG~iD~iv~R~elr~t 273 (294)
T COG0777 211 SASFAMLGDIIIAEPGALIGFAGPRV-------IEQTIREKLPEG----------FQTAEFLLEHGMIDMIVHRDELRTT 273 (294)
T ss_pred hHhHHhccCeeecCcccccccCcchh-------hhhhhcccCCcc----------hhhHHHHHHcCCceeeecHHHHHHH
Confidence 47899999999999999998875531 112222223222 2246777899999999999888888
Q ss_pred HHHHHHHHhccCH
Q 030339 160 ALEIAQEINQKVQ 172 (179)
Q Consensus 160 a~~~a~~~~~~~~ 172 (179)
...+.+.+...++
T Consensus 274 la~ll~~~~~~~~ 286 (294)
T COG0777 274 LASLLAKLTPQPA 286 (294)
T ss_pred HHHHHHHhCCCCC
Confidence 7777776665444
|
|
| >PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00073 Score=57.90 Aligned_cols=85 Identities=29% Similarity=0.419 Sum_probs=59.2
Q ss_pred HHHHhcCCCcEEEEEcccccchhHHHHhhcCEEEEcCC-ceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCc
Q 030339 58 FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEA-ALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKV 136 (179)
Q Consensus 58 ~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D~~va~~~-a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~ 136 (179)
..++.. ..|+|+++.|+|.|+|..++..||++|+.++ +.+++... +... ..+|+.+
T Consensus 125 ~~~~~~-~iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~GP--------------------~vv~--~~~Ge~~ 181 (493)
T PF01039_consen 125 IARLSG-GIPQISVVTGPCTGGGAYLAALSDFVIMVKGTARIFLAGP--------------------RVVE--SATGEEV 181 (493)
T ss_dssp HHHHHT-TS-EEEEEESEEEGGGGHHHHHSSEEEEETTTCEEESSTH--------------------HHHH--HHHSSCT
T ss_pred HHHHhc-CCCeEEEEccccccchhhcccccCccccCccceEEEeccc--------------------cccc--cccCccc
Confidence 444556 9999999999999999999999999999998 77775422 1111 1245677
Q ss_pred CHHH-------HHhcCccccccCCChHHHHHHHHHHHHh
Q 030339 137 SGKD-------AMSLGLVNYYVPAGQAQLKALEIAQEIN 168 (179)
Q Consensus 137 ~a~~-------a~~~Glv~~v~~~~~~~~~a~~~a~~~~ 168 (179)
+.++ +...|.+|.++++++ ++.+.++++.
T Consensus 182 ~~~~lgG~~~h~~~sG~~d~v~~de~---~a~~~ir~~l 217 (493)
T PF01039_consen 182 DSEELGGADVHAAKSGVVDYVVDDEE---DALAQIRRLL 217 (493)
T ss_dssp SHHHHHBHHHHHHTSSSSSEEESSHH---HHHHHHHHHH
T ss_pred cchhhhhhhhhcccCCCceEEEechH---HHHHHHHHhh
Confidence 7654 347899999997652 4444444443
|
The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F .... |
| >PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0015 Score=56.79 Aligned_cols=116 Identities=12% Similarity=0.051 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHHHHh----hcCEEEEcCCceeecccccccccCCcchhhhhhcc-c-
Q 030339 48 HFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMAL----ACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRL-V- 121 (179)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~----~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~-~- 121 (179)
....+...+++..+.....|.|+++-|.++|+|..-.. ..|+++++|++.++ +.++.+....+.+. +
T Consensus 422 ~G~~~~~a~l~~A~a~~~VP~isvi~g~a~G~g~~aM~g~~~~~d~~~awp~A~i~-------vmg~e~aa~il~~~e~~ 494 (569)
T PLN02820 422 SGIAKAGAKMVMAVACAKVPKITIIVGGSFGAGNYGMCGRAYSPNFLFMWPNARIG-------VMGGAQAAGVLAQIERE 494 (569)
T ss_pred hhHHHHHHHHHHHHHhCCCCEEEEEECCcchHHHHHhcCcCCCCCEEEECCCCeEE-------ecCHHHHHHHHHHHHhh
Confidence 44567778889999999999999999999998865554 56888888777666 44444344333221 1
Q ss_pred -----------CHHHH-HHHH--hcCCCcCHHHHHhcCccccccCCChHHHHHHHHHHHHhcc
Q 030339 122 -----------GKSVA-KDII--FTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170 (179)
Q Consensus 122 -----------g~~~a-~~l~--l~g~~~~a~~a~~~Glv~~v~~~~~~~~~a~~~a~~~~~~ 170 (179)
....+ ++.+ ..-+..++..+.+.|+||.|+++.+.........+...+.
T Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aa~~~~vD~VIdP~dTR~~l~~~l~~~~~~ 557 (569)
T PLN02820 495 NKKRQGIQWSKEEEEAFKAKTVEAYEREANPYYSTARLWDDGVIDPADTRRVLGLCLSAALNR 557 (569)
T ss_pred hhhhccccCCccHHHHHHHHHHHHHHHhCCHHHHHHcCCcCcccCHHHHHHHHHHHHHHhhcC
Confidence 11101 1111 1122457778899999999999988876665555544443
|
|
| >TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0031 Score=54.30 Aligned_cols=84 Identities=14% Similarity=0.211 Sum_probs=55.6
Q ss_pred CCCcEEEEEcccccchhHHHHhhcCEEEEcCCc-eeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHH-
Q 030339 64 LPIPTIAVIDGAALGGGLEMALACDLRICGEAA-LLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA- 141 (179)
Q Consensus 64 ~~kp~ia~v~G~a~g~G~~l~~~~D~~va~~~a-~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a- 141 (179)
-..|.|+++.|.|.||+......||++|+.+++ .+++... ..... .+|+.+++++.
T Consensus 153 ~~iP~Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~~aGP-----------~vv~~-----------~~Ge~v~~e~lG 210 (512)
T TIGR01117 153 GVVPQISAIMGPCAGGAVYSPALTDFIYMVDNTSQMFITGP-----------QVIKT-----------VTGEEVTAEQLG 210 (512)
T ss_pred CCCcEEEEEecCCCcHHHHHHHhcCceEEeccceEEEecCh-----------HHHHh-----------hcCcccchhhcc
Confidence 458999999999999998888899999999974 4543211 11111 23444444443
Q ss_pred ----H--hcCccccccCC-ChHHHHHHHHHHHHhc
Q 030339 142 ----M--SLGLVNYYVPA-GQAQLKALEIAQEINQ 169 (179)
Q Consensus 142 ----~--~~Glv~~v~~~-~~~~~~a~~~a~~~~~ 169 (179)
+ .-|.+|.++++ ++..+.++++..-+-+
T Consensus 211 Ga~~h~~~sGv~d~~~~de~ea~~~~r~~ls~lp~ 245 (512)
T TIGR01117 211 GAMAHNSVSGVAHFIAEDDDDCIMLIRRLLSFLPS 245 (512)
T ss_pred hHHHhccccceeEEecCChHHHHHHHHHHHHhCCc
Confidence 3 57999999864 4555556666555443
|
This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane. |
| >PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.013 Score=50.95 Aligned_cols=85 Identities=22% Similarity=0.335 Sum_probs=55.5
Q ss_pred HhcCCCcEEEEEcccccchhHHHHhhcCEEEEcCC-ceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHH
Q 030339 61 LEALPIPTIAVIDGAALGGGLEMALACDLRICGEA-ALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGK 139 (179)
Q Consensus 61 ~~~~~kp~ia~v~G~a~g~G~~l~~~~D~~va~~~-a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~ 139 (179)
+.....|.|+++.|.|.|||.....+||++|+.++ +.+.+. |+...+. .+|+.++++
T Consensus 201 ls~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~a--------------------GP~vV~~--~~Ge~v~~e 258 (569)
T PLN02820 201 MSSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFLA--------------------GPPLVKA--ATGEEVSAE 258 (569)
T ss_pred HhCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEec--------------------CHHHHHh--hcCcccCHH
Confidence 45567999999999999999999999999999876 555542 1111111 234445544
Q ss_pred HH-----H--hcCccccccCCC-hHHHHHHHHHHHH
Q 030339 140 DA-----M--SLGLVNYYVPAG-QAQLKALEIAQEI 167 (179)
Q Consensus 140 ~a-----~--~~Glv~~v~~~~-~~~~~a~~~a~~~ 167 (179)
+. + ..|.+|.+++++ +....++++..-+
T Consensus 259 eLGGa~~h~~~sGv~d~~~~de~~a~~~~R~lls~L 294 (569)
T PLN02820 259 DLGGADVHCKVSGVSDHFAQDELHALAIGRNIVKNL 294 (569)
T ss_pred HhCCHHHhcccccccccccCchHHHHHHHHHHHHhc
Confidence 43 3 478888888654 3334455555444
|
|
| >PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0024 Score=54.72 Aligned_cols=149 Identities=16% Similarity=0.119 Sum_probs=86.9
Q ss_pred HHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHHHHh
Q 030339 6 KHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMAL 85 (179)
Q Consensus 6 ~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~ 85 (179)
.+.+..++.. ++-+|.|.-. ..|..|- ..+.........+++..+..++.|+|+.+-|.++|+|+.-..
T Consensus 319 arfi~lcd~~-~iPlv~l~dt--pGf~~g~--------~~E~~g~~~~ga~~~~a~~~~~vP~itvi~~~~~Gga~~am~ 387 (493)
T PF01039_consen 319 ARFIRLCDAF-NIPLVTLVDT--PGFMPGP--------EAERAGIIRAGARLLYALAEATVPKITVIVRKAYGGAYYAMC 387 (493)
T ss_dssp HHHHHHHHHT-T--EEEEEEE--CEB--SH--------HHHHTTHHHHHHHHHHHHHHH-S-EEEEEEEEEEHHHHHHTT
T ss_pred HHHHHHHHhh-CCceEEEeec--ccccccc--------hhhhcchHHHHHHHHHHHHcCCCCEEEEEeCCccCcchhhhc
Confidence 3445555543 4455555543 3455444 233344566777889999999999999999999999876555
Q ss_pred hc----CEEEEcCCceeecccccccccCCcchhhhhhcccC--------H-HHHHHHHh-c-CCCcCHHHHHhcCccccc
Q 030339 86 AC----DLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVG--------K-SVAKDIIF-T-GRKVSGKDAMSLGLVNYY 150 (179)
Q Consensus 86 ~~----D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g--------~-~~a~~l~l-~-g~~~~a~~a~~~Glv~~v 150 (179)
.. |+++++|+++++.-. |++.....+.+..- . ....+.+- . -+..++..+.+.+++|.+
T Consensus 388 ~~~~~~~~~~Awp~a~~~vm~------~e~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~D~i 461 (493)
T PF01039_consen 388 GRGYGPDFVFAWPTAEIGVMG------PEGAASILYRDELEAAEAEGADPEAQRAEKIAEYEDELSSPYRAASRGYVDDI 461 (493)
T ss_dssp GGGGTTSEEEEETT-EEESS-------HHHHHHHHTHHHHHHSCHCCHSHHHHHHHHHHHHHHHHSSHHHHHHTTSSSEE
T ss_pred ccccchhhhhhhhcceeeecC------hhhhheeeehhhhhhhhcccchhHHHHHHHHHHHHHhcCCHHHHHhcCCCCCc
Confidence 55 899999998887422 22222222221111 0 00111111 1 112578999999999999
Q ss_pred cCCChHHHHHHHHHHHHhccC
Q 030339 151 VPAGQAQLKALEIAQEINQKV 171 (179)
Q Consensus 151 ~~~~~~~~~a~~~a~~~~~~~ 171 (179)
+++.+..........-..+++
T Consensus 462 i~p~~tR~~l~~~l~~~~~~~ 482 (493)
T PF01039_consen 462 IDPAETRKVLIAALEMLWQKP 482 (493)
T ss_dssp SSGGGHHHHHHHHHHHHTTSH
T ss_pred cCHHHHHHHHHHHHHHHHhCc
Confidence 999988877666555544443
|
The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F .... |
| >COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0073 Score=51.65 Aligned_cols=35 Identities=29% Similarity=0.420 Sum_probs=31.9
Q ss_pred HhcCCCcEEEEEcccccchhHHHHhhcCEEEEcCCc
Q 030339 61 LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAA 96 (179)
Q Consensus 61 ~~~~~kp~ia~v~G~a~g~G~~l~~~~D~~va~~~a 96 (179)
+... .|.|++|-|.|.|||..+...||++|+.++.
T Consensus 160 ~Sg~-IPqIsvv~G~c~gGgaY~pal~D~~imv~~~ 194 (526)
T COG4799 160 ASGV-IPQISVVMGPCAGGGAYSPALTDFVIMVRDQ 194 (526)
T ss_pred hccC-CCEEEEEEecCcccccccccccceEEEEcCC
Confidence 4445 9999999999999999999999999999984
|
|
| >KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.049 Score=42.36 Aligned_cols=91 Identities=18% Similarity=0.245 Sum_probs=52.9
Q ss_pred HHHHHhcCCCcEEEEEcccccchhHHHHhhcCEEEEcCCceeeccccccccc-CCcc----hhhh---------------
Q 030339 57 TFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAII-PGAG----GTQR--------------- 116 (179)
Q Consensus 57 ~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~-p~~~----~~~~--------------- 116 (179)
.+..+..++-||-...-|.|.+-|..|..+ .++.-++.+|..++=+. |.++ ..-.
T Consensus 142 IYDtMq~ik~~V~Tic~G~Aas~aalLLaa-----G~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~ 216 (275)
T KOG0840|consen 142 IYDTMQYIKPDVSTICVGLAASMAALLLAA-----GAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLN 216 (275)
T ss_pred HHHHHHhhCCCceeeehhhHHhHHHHHHhc-----CCCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHH
Confidence 445566777777777789999988777766 34445555555544332 2221 1111
Q ss_pred --hhcccC--HHHHHHHHhcCCCcCHHHHHhcCccccccC
Q 030339 117 --LPRLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVP 152 (179)
Q Consensus 117 --l~~~~g--~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~ 152 (179)
+.+..| .....+-+-.-+.++|+||+++||||+|.+
T Consensus 217 ~i~a~~Tgq~~e~i~~d~dRd~fmsa~EA~eyGliD~v~~ 256 (275)
T KOG0840|consen 217 EIYAKHTGQPLEVIEKDMDRDRFMSAEEAKEYGLIDKVID 256 (275)
T ss_pred HHHHHhcCCcHHHHHhhhcccccCCHHHHHHhcchhhhhc
Confidence 111111 122222233455679999999999999985
|
|
| >COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.037 Score=47.50 Aligned_cols=121 Identities=14% Similarity=0.155 Sum_probs=76.1
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHHH----HhhcCEEEEcCCceeecccccccccCCcchhhhhhcc
Q 030339 45 SEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEM----ALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRL 120 (179)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l----~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~ 120 (179)
.+....++....++.++.+...|.|..+-|-++|+|+.. ++..|+.+|++++.++.-+ |.+-....+.+.
T Consensus 377 ~E~~giik~Gakl~~A~aeatVPkitvI~rkayGga~~~M~~~~~~~~~~~AwP~a~iaVMG------~egAv~i~~~k~ 450 (526)
T COG4799 377 QEYGGIIKHGAKLLYAVAEATVPKITVITRKAYGGAYYVMGGKALGPDFNYAWPTAEIAVMG------PEGAVSILYRKE 450 (526)
T ss_pred HHhChHHHhhhHHHhhHhhccCCeEEEEecccccceeeeecCccCCCceeEecCcceeeecC------HHHHHHHHHHHH
Confidence 344566677788999999999999999999999998653 3347777777777766321 222222222222
Q ss_pred cC---HHHHH-----H-HH--hcCCCcCHHHHHhcCccccccCCChHHHHHHHHHHHHhccC
Q 030339 121 VG---KSVAK-----D-II--FTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKV 171 (179)
Q Consensus 121 ~g---~~~a~-----~-l~--l~g~~~~a~~a~~~Glv~~v~~~~~~~~~a~~~a~~~~~~~ 171 (179)
+. ....+ + +. ..-+-.++--+.+.|+||.|+++.+...........+.+++
T Consensus 451 l~~~~~~~~~~~~~~~~~~~eY~~~~~~p~~aa~r~~iD~vI~p~~tR~~L~~~l~~~~~k~ 512 (526)
T COG4799 451 LAAAERPEEREALLRKQLIAEYEEQFSNPYYAAERGYIDAVIDPADTRAVLGRALSALANKP 512 (526)
T ss_pred hhcccCchhHHHHHHHHHHHHHHHhccchHHHHHhCCCCcccCHHHHHHHHHHHHHHHhcCc
Confidence 21 00000 0 11 11222466678889999999999887777666666655553
|
|
| >KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.31 Score=41.01 Aligned_cols=111 Identities=12% Similarity=0.085 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHH---HHhhcCEEEEcCCceeecccccccccCCcchhhhhhcc---
Q 030339 47 IHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLE---MALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRL--- 120 (179)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~---l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~--- 120 (179)
.....+.-..++..+...+.|-|..+.|.++||-+. ..+.-|+.+++|++++++-..+ +....+.+.
T Consensus 404 ~~gIaK~gAklv~a~a~akvpkITiit~~syGG~y~m~sr~~~gd~~yawP~A~IavmG~~-------~a~~Vi~q~~~e 476 (536)
T KOG0540|consen 404 AGGIAKHGAKLVYAVACAKVPKITIITGGSYGGNYAMCSRGYSGDINYAWPNARIAVMGGK-------QAANVIFQITLE 476 (536)
T ss_pred hhchhhhhhhhhhhhhhccCceEEEEecCccCCcccccccccCCceeEEcccceeeecccc-------chhhhhhhhhhh
Confidence 334445556788888889999999999999997544 6778899999999998854331 111112111
Q ss_pred ----cCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHHHHHHHHHHhcc
Q 030339 121 ----VGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170 (179)
Q Consensus 121 ----~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~a~~~a~~~~~~ 170 (179)
.+...+. .+ |.|+. +...||+|.++++.+.....-..-+..+++
T Consensus 477 ~a~~~~~~~~E-~f--~npy~---a~~Rg~~D~II~p~~tR~vl~~~l~~~~~~ 524 (536)
T KOG0540|consen 477 KAVALKAPYIE-KF--GNPYY---AAARGWDDGIIDPSDTRKVLGLDLQAAANK 524 (536)
T ss_pred hhhhhcchHHH-Hh--cCccH---HHHhhccccccChhHhhHHHHHHHHHHhcC
Confidence 1222222 22 55543 467899999999877665443333433333
|
|
| >COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=91.37 E-value=0.95 Score=35.96 Aligned_cols=54 Identities=17% Similarity=0.244 Sum_probs=37.4
Q ss_pred HHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEccccc
Q 030339 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 77 (179)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~ 77 (179)
.+.++|+.+++||+.++||+-|.-|+ +- +++. .+++.. ...+||+|+.+-|.+.
T Consensus 187 ~fid~L~~fe~Dp~T~~ivmiGEiGG------~a------Ee~A-------A~~i~~-~~~~KPVVa~iaG~ta 240 (293)
T COG0074 187 SFIDALEMFEADPETEAIVMIGEIGG------PA------EEEA-------AEYIKA-NATRKPVVAYIAGRTA 240 (293)
T ss_pred cHHHHHHHHhcCccccEEEEEecCCC------cH------HHHH-------HHHHHH-hccCCCEEEEEeccCC
Confidence 46789999999999999999998321 11 1112 223333 3445999999999876
|
|
| >PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins | Back alignment and domain information |
|---|
Probab=87.95 E-value=5.5 Score=30.90 Aligned_cols=93 Identities=13% Similarity=0.156 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhcCCCcEEEEEcccccchhHH-HHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHH
Q 030339 52 NTLRSTFSFLEALPIPTIAVIDGAALGGGLE-MALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDII 130 (179)
Q Consensus 52 ~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~-l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~ 130 (179)
....+.+...+.-.-|+|+.+-|.+++|||- ..+.+|.+++-+++.+. -+++. ...+..+ .+...-.++.
T Consensus 92 Ahla~a~a~AR~~GHpvI~Lv~G~A~SGaFLA~GlqA~rl~AL~ga~i~----vM~~~----s~ARVTk-~~ve~Le~la 162 (234)
T PF06833_consen 92 AHLAKAYALARLAGHPVIGLVYGKAMSGAFLAHGLQANRLIALPGAMIH----VMGKP----SAARVTK-RPVEELEELA 162 (234)
T ss_pred HHHHHHHHHHHHcCCCeEEEEecccccHHHHHHHHHhcchhcCCCCeee----cCChH----HhHHHhh-cCHHHHHHHh
Confidence 3344455566778899999999999999854 88999999987754443 12222 1223332 2333444444
Q ss_pred hcCCC--cCHHHHHhcCccccccCC
Q 030339 131 FTGRK--VSGKDAMSLGLVNYYVPA 153 (179)
Q Consensus 131 l~g~~--~~a~~a~~~Glv~~v~~~ 153 (179)
-+--+ ++.+--.++|.++++.+.
T Consensus 163 ~s~PvfA~gi~ny~~lG~l~~l~~~ 187 (234)
T PF06833_consen 163 KSVPVFAPGIENYAKLGALDELWDG 187 (234)
T ss_pred hcCCCcCCCHHHHHHhccHHHHhcc
Confidence 44332 456677789999999873
|
Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity. |
| >PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=87.86 E-value=1.7 Score=35.31 Aligned_cols=54 Identities=9% Similarity=0.270 Sum_probs=36.9
Q ss_pred HHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEccccc
Q 030339 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 77 (179)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~ 77 (179)
++.+.|+.+++||+.++|++-++.++ . ..++..++++. ...+||+|+.+-|...
T Consensus 211 ~~~D~L~~~~~Dp~T~~Ivl~~E~gG-----~-------~e~~aa~fi~~--------~~~~KPVVa~~aGrsa 264 (317)
T PTZ00187 211 NFIDCLKLFLNDPETEGIILIGEIGG-----T-------AEEEAAEWIKN--------NPIKKPVVSFIAGITA 264 (317)
T ss_pred CHHHHHHHHhhCCCccEEEEEEecCC-----c-------hhHHHHHHHHh--------hcCCCcEEEEEecCCC
Confidence 35688999999999999999998321 0 11222233222 2468999999998864
|
|
| >PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A | Back alignment and domain information |
|---|
Probab=87.17 E-value=2.3 Score=30.18 Aligned_cols=52 Identities=12% Similarity=0.148 Sum_probs=29.3
Q ss_pred HHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccc
Q 030339 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 76 (179)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a 76 (179)
.+.+.++.+.+||++++|++--++-+ +. +.+.+..++.... ||+|+..-|..
T Consensus 41 ~~~d~l~~~~~D~~t~~I~ly~E~~~----------------d~----~~f~~~~~~a~~~-KPVv~lk~Grt 92 (138)
T PF13607_consen 41 DFADLLEYLAEDPDTRVIVLYLEGIG----------------DG----RRFLEAARRAARR-KPVVVLKAGRT 92 (138)
T ss_dssp -HHHHHHHHCT-SS--EEEEEES--S-----------------H----HHHHHHHHHHCCC-S-EEEEE----
T ss_pred CHHHHHHHHhcCCCCCEEEEEccCCC----------------CH----HHHHHHHHHHhcC-CCEEEEeCCCc
Confidence 35788899999999999999887311 11 2344455556556 99999999874
|
|
| >TIGR00237 xseA exodeoxyribonuclease VII, large subunit | Back alignment and domain information |
|---|
Probab=86.11 E-value=2 Score=36.39 Aligned_cols=82 Identities=16% Similarity=0.182 Sum_probs=52.4
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHH
Q 030339 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLE 82 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~ 82 (179)
.++..+++.++..+++.+|||.=. |+++. ||..| -+ ..+.+.+.++|.|||++| ||-.-- .-
T Consensus 173 ~~i~~al~~~~~~~~~dviii~RG-GGs~e---DL~~F----------n~--e~~~rai~~~~~Pvis~i-GHe~D~-ti 234 (432)
T TIGR00237 173 QSIVESIELANTKNECDVLIVGRG-GGSLE---DLWSF----------ND--EKVARAIFLSKIPIISAV-GHETDF-TI 234 (432)
T ss_pred HHHHHHHHHhhcCCCCCEEEEecC-CCCHH---Hhhhc----------Cc--HHHHHHHHcCCCCEEEec-CcCCCc-cH
Confidence 578888988887666666666322 33221 33322 12 357889999999999988 332221 34
Q ss_pred HHhhcCEEEEcCCc--eeeccc
Q 030339 83 MALACDLRICGEAA--LLGLPE 102 (179)
Q Consensus 83 l~~~~D~~va~~~a--~~~~p~ 102 (179)
.=+.+|.+..||.+ .+-.|.
T Consensus 235 ~D~vAd~ra~TPtaaae~~~p~ 256 (432)
T TIGR00237 235 SDFVADLRAPTPSAAAEIVSPN 256 (432)
T ss_pred HHHhhhccCCCcHHHHHHhCcc
Confidence 55788999999884 455443
|
This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits. |
| >PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6 | Back alignment and domain information |
|---|
Probab=85.14 E-value=2.3 Score=30.79 Aligned_cols=62 Identities=15% Similarity=0.180 Sum_probs=37.7
Q ss_pred HHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccc
Q 030339 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 78 (179)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g 78 (179)
...++|....+||++++|++-+..|-.=| .+....+...+...-. ...++|+|+.+.|...-
T Consensus 60 ~~~~~l~~~~~Dp~v~vIlvd~~~G~g~~-----------~~~A~~l~~a~~~~~~--~~~~~pvVa~v~GT~~d 121 (153)
T PF00549_consen 60 TRNEALEIEAADPEVKVILVDIVGGIGSC-----------EDPAAGLIPAIKEAKA--EGRKKPVVARVCGTNAD 121 (153)
T ss_dssp HHHHHHHHHHTSTTESEEEEEEESSSSSH-----------HHHHHHHHHHHSHCTH--TTT-SEEEEEEESTTCH
T ss_pred HHHHHHHHHhcCCCccEEEEEeccccCch-----------HHHHHHHHHHHHhccc--cCCCCcEEEEeeeecCC
Confidence 46788999999999999999987432222 1112222222111111 24689999999997754
|
2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A .... |
| >PLN02522 ATP citrate (pro-S)-lyase | Back alignment and domain information |
|---|
Probab=84.77 E-value=3.2 Score=36.74 Aligned_cols=53 Identities=8% Similarity=0.101 Sum_probs=37.3
Q ss_pred HHHHHHHHhhcCCCceEEEEEeC-CCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEccccc
Q 030339 4 GLKHAFETISEDSSANVVMIRSS-VPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 77 (179)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~-~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~ 77 (179)
++.+.|+.+++||+.++|++-++ |++ +..++ .+.+++.. .+||+|+..-|.+-
T Consensus 209 ~~~D~L~~~~~Dp~Tk~IvlygEiGg~----------------~e~~f----~ea~~~a~-~~KPVVa~kaGrsa 262 (608)
T PLN02522 209 TLSDHVLRFNNIPQIKMIVVLGELGGR----------------DEYSL----VEALKQGK-VSKPVVAWVSGTCA 262 (608)
T ss_pred CHHHHHHHHhcCCCCCEEEEEEecCch----------------hHHHH----HHHHHHhc-CCCCEEEEeccCCC
Confidence 36788999999999999999998 432 11122 22233322 78999999998876
|
|
| >PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3 | Back alignment and domain information |
|---|
Probab=84.06 E-value=2.9 Score=33.73 Aligned_cols=76 Identities=24% Similarity=0.277 Sum_probs=50.0
Q ss_pred HHHHHHHHHhhcCC---CceEEEE-EeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccc
Q 030339 3 RGLKHAFETISEDS---SANVVMI-RSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 78 (179)
Q Consensus 3 ~~l~~~l~~~~~d~---~v~~vvl-~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g 78 (179)
.++..+|+.+...+ .+.+||| +|. +++. ||..| -+ ..+.+.+..+|.|||++| ||-.-
T Consensus 58 ~~I~~al~~~~~~~~~~~~Dviii~RGG--Gs~e---DL~~F----------N~--e~varai~~~~~PvisaI-GHe~D 119 (319)
T PF02601_consen 58 ASIVSALRKANEMGQADDFDVIIIIRGG--GSIE---DLWAF----------ND--EEVARAIAASPIPVISAI-GHETD 119 (319)
T ss_pred HHHHHHHHHHHhccccccccEEEEecCC--CChH---Hhccc----------Ch--HHHHHHHHhCCCCEEEec-CCCCC
Confidence 57888999998764 4555555 543 2221 33332 11 357899999999999988 44433
Q ss_pred hhHHHHhhcCEEEEcCCce
Q 030339 79 GGLEMALACDLRICGEAAL 97 (179)
Q Consensus 79 ~G~~l~~~~D~~va~~~a~ 97 (179)
- .-.=+.||.+..||.+-
T Consensus 120 ~-ti~D~vAd~ra~TPtaa 137 (319)
T PF02601_consen 120 F-TIADFVADLRAPTPTAA 137 (319)
T ss_pred c-hHHHHHHHhhCCCHHHH
Confidence 2 44567889999998843
|
1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity |
| >COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=83.34 E-value=2.7 Score=35.54 Aligned_cols=81 Identities=17% Similarity=0.213 Sum_probs=52.6
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHH
Q 030339 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLE 82 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~ 82 (179)
.++.++++.++..+++.++|+- -||++ -++.+.|.++ .+.+.+.+++.|+|++| ||-.-. .-
T Consensus 179 ~eIv~aI~~an~~~~~DvlIVa-RGGGS-------------iEDLW~FNdE--~vaRAi~~s~iPvISAV-GHEtD~-tL 240 (440)
T COG1570 179 EEIVEAIERANQRGDVDVLIVA-RGGGS-------------IEDLWAFNDE--IVARAIAASRIPVISAV-GHETDF-TL 240 (440)
T ss_pred HHHHHHHHHhhccCCCCEEEEe-cCcch-------------HHHHhccChH--HHHHHHHhCCCCeEeec-ccCCCc-cH
Confidence 5788999999998888888873 22221 1333333333 57899999999999998 332211 22
Q ss_pred HHhhcCEEEEcCCc--eeecc
Q 030339 83 MALACDLRICGEAA--LLGLP 101 (179)
Q Consensus 83 l~~~~D~~va~~~a--~~~~p 101 (179)
.=..+|+|-.||.+ .+..|
T Consensus 241 ~DfVAD~RApTPTaAAE~~vP 261 (440)
T COG1570 241 ADFVADLRAPTPTAAAELVVP 261 (440)
T ss_pred HHhhhhccCCCchHHHHHhCC
Confidence 34568888888874 34444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 179 | ||||
| 1hzd_A | 272 | Crystal Structure Of Human Auh Protein, An Rna-Bind | 2e-33 | ||
| 3kqf_A | 265 | 1.8 Angstrom Resolution Crystal Structure Of Enoyl- | 2e-32 | ||
| 1mj3_A | 260 | Crystal Structure Analysis Of Rat Enoyl-Coa Hydrata | 4e-20 | ||
| 1dub_A | 261 | 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph | 4e-20 | ||
| 1ey3_A | 258 | Structure Of Enoyl-Coa Hydratase Complexed With The | 4e-20 | ||
| 4fzw_A | 258 | Crystal Structure Of The Paaf-paag Hydratase-isomer | 1e-18 | ||
| 2ppy_A | 265 | Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) F | 2e-18 | ||
| 2hw5_A | 286 | The Crystal Structure Of Human Enoyl-Coenzyme A (Co | 2e-17 | ||
| 3h81_A | 278 | Crystal Structure Of Enoyl-Coa Hydratase From Mycob | 2e-17 | ||
| 3q0j_A | 258 | Crystal Structure Of The Mycobacterium Tuberculosis | 3e-17 | ||
| 3pzk_A | 257 | Crystal Structure Of The Mycobacterium Tuberculosis | 3e-17 | ||
| 3moy_A | 263 | Crystal Structure Of Probable Enoyl-Coa Hydratase F | 4e-16 | ||
| 2wtb_A | 725 | Arabidopsis Thaliana Multifuctional Protein, Mfp2 L | 9e-16 | ||
| 3r9q_A | 262 | Structure Of A Probable Enoyl-Coa HydrataseISOMERAS | 2e-15 | ||
| 1wdk_A | 715 | Fatty Acid Beta-Oxidation Multienzyme Complex From | 2e-15 | ||
| 2pbp_A | 258 | Crystal Structure Of Enoyl-Coa Hydrates Subunit I ( | 6e-15 | ||
| 3pea_A | 261 | Crystal Structure Of Enoyl-Coa Hydratase From Bacil | 8e-15 | ||
| 3qka_A | 261 | Crystal Structure Of Enoyl-Coa Hydratase Echa5 From | 2e-14 | ||
| 1dci_A | 275 | Dienoyl-Coa Isomerase Length = 275 | 2e-14 | ||
| 3r0o_A | 273 | Crystal Structure Of Carnitinyl-Coa Hydratase From | 3e-14 | ||
| 4f47_A | 278 | The Structure Of Enoyl-Coa Hydratase Echa19 From My | 3e-14 | ||
| 1uiy_A | 253 | Crystal Structure Of Enoyl-Coa Hydratase From Therm | 5e-14 | ||
| 2iex_A | 272 | Crystal Structure Of Dihydroxynapthoic Acid Synthet | 3e-13 | ||
| 3zw8_A | 742 | Crystal Structure Of Rat Peroxisomal Multifunctiona | 4e-13 | ||
| 2x58_A | 727 | The Crystal Structure Of Mfe1 Liganded With Coa Len | 4e-13 | ||
| 2vre_A | 296 | Crystal Structure Of Human Peroxisomal Delta3,5, De | 6e-13 | ||
| 3trr_A | 256 | Crystal Structure Of A Probable Enoyl-Coa Hydratase | 7e-13 | ||
| 3qxz_A | 265 | Crystal Structure Of A Probable Enoyl-Coa Hydratase | 1e-12 | ||
| 3myb_A | 286 | Crystal Structure Of Enoyl-Coa Hydratase Mycobacter | 2e-12 | ||
| 3zwb_A | 742 | Crystal Structure Of Rat Peroxisomal Multifunctiona | 2e-12 | ||
| 3hin_A | 275 | Crystal Structure Of Putative Enoyl-Coa Hydratase F | 2e-11 | ||
| 2vsu_C | 275 | A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase | 2e-11 | ||
| 2vsu_F | 276 | A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase | 3e-11 | ||
| 2vsu_A | 276 | A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase | 3e-11 | ||
| 2j5i_B | 276 | Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase | 3e-11 | ||
| 2vss_F | 276 | Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In C | 3e-11 | ||
| 2j5i_I | 276 | Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase | 3e-11 | ||
| 2j5i_A | 276 | Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase | 3e-11 | ||
| 2vss_E | 276 | Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In C | 3e-11 | ||
| 2vsu_E | 276 | A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase | 3e-11 | ||
| 3rsi_A | 265 | The Structure Of A Putative Enoyl-Coa HydrataseISOM | 7e-11 | ||
| 3r9t_A | 267 | Structure Of Echa1_1 From Mycobacterium Paratubercu | 7e-11 | ||
| 3r9s_A | 267 | Structure Of A Carnitinyl-Coa Dehydratase From Myco | 8e-11 | ||
| 3t88_A | 289 | Crystal Structure Of Escherichia Coli Menb In Compl | 1e-10 | ||
| 4els_A | 285 | Structure Of E. Coli. 1,4-Dihydroxy-2- Naphthoyl Co | 1e-10 | ||
| 3qyr_A | 253 | Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 M | 4e-10 | ||
| 3p85_A | 270 | Crystal Structure Enoyl-Coa Hydratase From Mycobact | 4e-10 | ||
| 3h02_A | 288 | 2.15 Angstrom Resolution Crystal Structure Of Napht | 6e-10 | ||
| 4eml_A | 275 | Synechocystis Sp. Pcc 6803 1,4-Dihydroxy-2-Naphthoy | 3e-09 | ||
| 4di1_A | 277 | Crystal Structure Of Enoyl-Coa Hydratase Echa17 Fro | 4e-09 | ||
| 2vx2_A | 287 | Crystal Structure Of Human Enoyl Coenzyme A Hydrata | 5e-09 | ||
| 3hrx_A | 254 | Crystal Structure Of Phenylacetic Acid Degradation | 5e-09 | ||
| 2uzf_A | 273 | Crystal Structure Of Staphylococcus Aureus 1,4-Dihy | 8e-09 | ||
| 3gkb_A | 287 | Crystal Structure Of A Putative Enoyl-coa Hydratase | 1e-08 | ||
| 4hdt_A | 353 | Crystal Structure Of A Carnitinyl-Coa Dehydratase F | 2e-08 | ||
| 3he2_A | 264 | Crystal Structure Of Enoyl-Coa Hydratase From Mycob | 2e-08 | ||
| 1ef8_A | 261 | Crystal Structure Of Methylmalonyl Coa Decarboxylas | 2e-08 | ||
| 3t3w_A | 279 | Crystal Structure Of Probable Enoyl-Coa Hydratase F | 3e-08 | ||
| 3ome_A | 282 | Crystal Structure Of A Probable Enoyl-Coa Hydratase | 5e-08 | ||
| 3rrv_A | 276 | Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS | 7e-08 | ||
| 3h0u_A | 289 | Crystal Structure Of A Putative Enoyl-Coa Hydratase | 9e-08 | ||
| 3bpt_A | 363 | Crystal Structure Of Human Beta-Hydroxyisobutyryl-C | 1e-07 | ||
| 3l3s_A | 263 | Crystal Structure Of An Enoyl-Coa HydrotaseISOMERAS | 1e-06 | ||
| 4j2u_A | 365 | Crystal Structure Of An Enoyl-coa Hydratase From Rh | 2e-06 | ||
| 3pe8_A | 256 | Crystal Structure Of Enoyl-Coa Hydratase From Mycob | 4e-06 | ||
| 2gtr_A | 261 | Human Chromodomain Y-Like Protein Length = 261 | 4e-06 | ||
| 3qmj_A | 256 | Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 Fr | 5e-06 | ||
| 3sll_A | 290 | Crystal Structure Of A Probable Enoyl-Coa Hydratase | 6e-06 | ||
| 3p5m_A | 255 | Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS | 2e-05 | ||
| 2fbm_A | 291 | Acetyltransferase Domain Of Cdy1 Length = 291 | 2e-05 | ||
| 4fzw_C | 274 | Crystal Structure Of The Paaf-paag Hydratase-isomer | 2e-05 | ||
| 3oc7_A | 267 | Crystal Structure Of An Enoyl-Coa Hydratase From My | 3e-05 | ||
| 1q51_A | 314 | Crystal Structure Of Mycobacterium Tuberculosis Men | 3e-05 | ||
| 1rjm_A | 339 | Crystal Structure Of Menb (rv0548c) From Mycobacter | 4e-05 | ||
| 3t8a_A | 334 | Crystal Structure Of Mycobacterium Tuberculosis Men | 4e-05 | ||
| 2fw2_A | 260 | Catalytic Domain Of Cdy Length = 260 | 5e-05 | ||
| 3qk8_A | 272 | Crystal Structure Of Enoyl-Coa Hydratase Echa15 Fro | 8e-05 | ||
| 1jxz_A | 269 | Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coe | 1e-04 | ||
| 1szo_A | 257 | Crystal Structure Analysis Of The 6-Oxo Camphor Hyd | 1e-04 | ||
| 1o8u_A | 257 | The 2 Angstrom Structure Of 6-oxo Camphor Hydrolase | 1e-04 | ||
| 1nzy_A | 269 | 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo | 1e-04 | ||
| 1nzy_B | 269 | 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo | 1e-04 | ||
| 2ej5_A | 257 | Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydr | 2e-04 | ||
| 3m6m_A | 305 | Crystal Structure Of Rpff Complexed With Rec Domain | 2e-04 | ||
| 3qre_A | 298 | Crystal Structure Of An Enoyl-Coa Hydratase Echa12_ | 3e-04 | ||
| 3i47_A | 268 | Crystal Structure Of Putative Enoyl Coa HydrataseIS | 4e-04 | ||
| 3swx_A | 265 | Crystal Structure Of A Probable Enoyl-Coa Hydratase | 4e-04 | ||
| 3fdu_A | 266 | Crystal Structure Of A Putative Enoyl-Coa Hydratase | 5e-04 |
| >pdb|1HZD|A Chain A, Crystal Structure Of Human Auh Protein, An Rna-Binding Homologue Of Enoyl-Coa Hydratase Length = 272 | Back alignment and structure |
|
| >pdb|3KQF|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis. Length = 265 | Back alignment and structure |
|
| >pdb|1MJ3|A Chain A, Crystal Structure Analysis Of Rat Enoyl-Coa Hydratase In Complex With Hexadienoyl-Coa Length = 260 | Back alignment and structure |
|
| >pdb|1DUB|A Chain A, 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph 6.5 Length = 261 | Back alignment and structure |
|
| >pdb|1EY3|A Chain A, Structure Of Enoyl-Coa Hydratase Complexed With The Substrate Dac-Coa Length = 258 | Back alignment and structure |
|
| >pdb|4FZW|A Chain A, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 258 | Back alignment and structure |
|
| >pdb|2PPY|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) From Geobacillus Kaustophilus Hta426 Length = 265 | Back alignment and structure |
|
| >pdb|2HW5|A Chain A, The Crystal Structure Of Human Enoyl-Coenzyme A (Coa) Hydratase Short Chain 1, Echs1 Length = 286 | Back alignment and structure |
|
| >pdb|3H81|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 278 | Back alignment and structure |
|
| >pdb|3Q0J|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Complex With The Inhibitor Acetoacetylcoa Length = 258 | Back alignment and structure |
|
| >pdb|3PZK|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Apo Form Length = 257 | Back alignment and structure |
|
| >pdb|3MOY|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase From Mycob Smegmatis Length = 263 | Back alignment and structure |
|
| >pdb|2WTB|A Chain A, Arabidopsis Thaliana Multifuctional Protein, Mfp2 Length = 725 | Back alignment and structure |
|
| >pdb|3R9Q|A Chain A, Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 262 | Back alignment and structure |
|
| >pdb|1WDK|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From Pseudomonas Fragi, Form I (Native2) Length = 715 | Back alignment and structure |
|
| >pdb|2PBP|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates Subunit I (Gk_2039) From Geobacillus Kaustophilus Hta426 Length = 258 | Back alignment and structure |
|
| >pdb|3PEA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis Str. 'ames Ancestor' Length = 261 | Back alignment and structure |
|
| >pdb|3QKA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa5 From Mycobacterium Marinum Length = 261 | Back alignment and structure |
|
| >pdb|1DCI|A Chain A, Dienoyl-Coa Isomerase Length = 275 | Back alignment and structure |
|
| >pdb|3R0O|A Chain A, Crystal Structure Of Carnitinyl-Coa Hydratase From Mycobacterium Avium Length = 273 | Back alignment and structure |
|
| >pdb|4F47|A Chain A, The Structure Of Enoyl-Coa Hydratase Echa19 From Mycobacterium Marinum Length = 278 | Back alignment and structure |
|
| >pdb|1UIY|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Thermus Thermophilus Hb8 Length = 253 | Back alignment and structure |
|
| >pdb|2IEX|A Chain A, Crystal Structure Of Dihydroxynapthoic Acid Synthetase (Gk2873) From Geobacillus Kaustophilus Hta426 Length = 272 | Back alignment and structure |
|
| >pdb|3ZW8|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) In Apo Form Length = 742 | Back alignment and structure |
|
| >pdb|2X58|A Chain A, The Crystal Structure Of Mfe1 Liganded With Coa Length = 727 | Back alignment and structure |
|
| >pdb|2VRE|A Chain A, Crystal Structure Of Human Peroxisomal Delta3,5, Delta2,4-Dienoyl Coa Isomerase Length = 296 | Back alignment and structure |
|
| >pdb|3TRR|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 256 | Back alignment and structure |
|
| >pdb|3QXZ|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 265 | Back alignment and structure |
|
| >pdb|3MYB|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Mycobacterium Smegm Length = 286 | Back alignment and structure |
|
| >pdb|3ZWB|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) Complexed With 2trans-hexenoyl-coa Length = 742 | Back alignment and structure |
|
| >pdb|3HIN|A Chain A, Crystal Structure Of Putative Enoyl-Coa Hydratase From Rhodopseudomonas Palustris Cga009 Length = 275 | Back alignment and structure |
|
| >pdb|2VSU|C Chain C, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 275 | Back alignment and structure |
|
| >pdb|2VSU|F Chain F, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 276 | Back alignment and structure |
|
| >pdb|2VSU|A Chain A, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism. Length = 276 | Back alignment and structure |
|
| >pdb|2J5I|B Chain B, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276 | Back alignment and structure |
|
| >pdb|2VSS|F Chain F, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex With Acetyl-Coa And Vanillin Length = 276 | Back alignment and structure |
|
| >pdb|2J5I|I Chain I, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276 | Back alignment and structure |
|
| >pdb|2J5I|A Chain A, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276 | Back alignment and structure |
|
| >pdb|2VSS|E Chain E, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex With Acetyl-Coa And Vanillin Length = 276 | Back alignment and structure |
|
| >pdb|2VSU|E Chain E, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 276 | Back alignment and structure |
|
| >pdb|3RSI|A Chain A, The Structure Of A Putative Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 265 | Back alignment and structure |
|
| >pdb|3R9T|A Chain A, Structure Of Echa1_1 From Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 267 | Back alignment and structure |
|
| >pdb|3R9S|A Chain A, Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Avium 104 Length = 267 | Back alignment and structure |
|
| >pdb|3T88|A Chain A, Crystal Structure Of Escherichia Coli Menb In Complex With Substrate Analogue, Osb-Ncoa Length = 289 | Back alignment and structure |
|
| >pdb|4ELS|A Chain A, Structure Of E. Coli. 1,4-Dihydroxy-2- Naphthoyl Coenzyme A Synthases (Menb) In Complex With Bicarbonate Length = 285 | Back alignment and structure |
|
| >pdb|3QYR|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 253 | Back alignment and structure |
|
| >pdb|3P85|A Chain A, Crystal Structure Enoyl-Coa Hydratase From Mycobacterium Avium Length = 270 | Back alignment and structure |
|
| >pdb|3H02|A Chain A, 2.15 Angstrom Resolution Crystal Structure Of Naphthoate Synthase From Salmonella Typhimurium. Length = 288 | Back alignment and structure |
|
| >pdb|4EML|A Chain A, Synechocystis Sp. Pcc 6803 1,4-Dihydroxy-2-Naphthoyl-Coenzyme A Synthase (Menb) In Complex With Bicarbonate Length = 275 | Back alignment and structure |
|
| >pdb|4DI1|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa17 From Mycobacterium Marinum Length = 277 | Back alignment and structure |
|
| >pdb|2VX2|A Chain A, Crystal Structure Of Human Enoyl Coenzyme A Hydratase Domain-Containing Protein 3 (Echdc3) Length = 287 | Back alignment and structure |
|
| >pdb|3HRX|A Chain A, Crystal Structure Of Phenylacetic Acid Degradation Protein Paag Length = 254 | Back alignment and structure |
|
| >pdb|2UZF|A Chain A, Crystal Structure Of Staphylococcus Aureus 1,4-Dihydroxy-2- Naphthoyl Coa Synthase (Menb) In Complex With Acetoacetyl Coa Length = 273 | Back alignment and structure |
|
| >pdb|3GKB|A Chain A, Crystal Structure Of A Putative Enoyl-coa Hydratase From Streptomyces Avermitilis Length = 287 | Back alignment and structure |
|
| >pdb|4HDT|A Chain A, Crystal Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Thermoresistibile Length = 353 | Back alignment and structure |
|
| >pdb|3HE2|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 264 | Back alignment and structure |
|
| >pdb|1EF8|A Chain A, Crystal Structure Of Methylmalonyl Coa Decarboxylase Length = 261 | Back alignment and structure |
|
| >pdb|3T3W|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase From Mycobacterium Thermoresistibile Length = 279 | Back alignment and structure |
|
| >pdb|3OME|A Chain A, Crystal Structure Of A Probable Enoyl-Coa Hydratase From Mycobacterium Smegmatis Length = 282 | Back alignment and structure |
|
| >pdb|3RRV|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Paratuberculosis Length = 276 | Back alignment and structure |
|
| >pdb|3H0U|A Chain A, Crystal Structure Of A Putative Enoyl-Coa Hydratase From Streptomyces Avermitilis Length = 289 | Back alignment and structure |
|
| >pdb|3BPT|A Chain A, Crystal Structure Of Human Beta-Hydroxyisobutyryl-Coa Hydrolase In Complex With Quercetin Length = 363 | Back alignment and structure |
|
| >pdb|3L3S|A Chain A, Crystal Structure Of An Enoyl-Coa HydrotaseISOMERASE FAMILY Protein From Silicibacter Pomeroyi Length = 263 | Back alignment and structure |
|
| >pdb|4J2U|A Chain A, Crystal Structure Of An Enoyl-coa Hydratase From Rhodobacter Sphaeroides 2.4.1 Length = 365 | Back alignment and structure |
|
| >pdb|3PE8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Smegmatis Length = 256 | Back alignment and structure |
|
| >pdb|2GTR|A Chain A, Human Chromodomain Y-Like Protein Length = 261 | Back alignment and structure |
|
| >pdb|3QMJ|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 From Mycobacterium Marinum Length = 256 | Back alignment and structure |
|
| >pdb|3SLL|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 290 | Back alignment and structure |
|
| >pdb|3P5M|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Avium Length = 255 | Back alignment and structure |
|
| >pdb|2FBM|A Chain A, Acetyltransferase Domain Of Cdy1 Length = 291 | Back alignment and structure |
|
| >pdb|4FZW|C Chain C, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 274 | Back alignment and structure |
|
| >pdb|3OC7|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase From Mycobacterium Avium Length = 267 | Back alignment and structure |
|
| >pdb|1Q51|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Menb In Complex With Acetoacetyl-Coenzyme A, A Key Enzyme In Vitamin K2 Biosynthesis Length = 314 | Back alignment and structure |
|
| >pdb|1RJM|A Chain A, Crystal Structure Of Menb (rv0548c) From Mycobacterium Tuberculosis Length = 339 | Back alignment and structure |
|
| >pdb|3T8A|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Menb In Complex With Substrate Analogue, Osb-Ncoa Length = 334 | Back alignment and structure |
|
| >pdb|2FW2|A Chain A, Catalytic Domain Of Cdy Length = 260 | Back alignment and structure |
|
| >pdb|3QK8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From Mycobacterium Marinum In Complex With An Unknown Ligand Length = 272 | Back alignment and structure |
|
| >pdb|1JXZ|A Chain A, Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coenzyme A Dehalogenase Complexed With 4-Hydroxybenzoyl-Coenzyme A (Product) Length = 269 | Back alignment and structure |
|
| >pdb|1SZO|A Chain A, Crystal Structure Analysis Of The 6-Oxo Camphor Hydrolase His122ala Mutant Bound To Its Natural Product (2s,4s)- Alpha-Campholinic Acid Length = 257 | Back alignment and structure |
|
| >pdb|1O8U|A Chain A, The 2 Angstrom Structure Of 6-oxo Camphor Hydrolase: New Structural Diversity In The Crotonase Superfamily Length = 257 | Back alignment and structure |
|
| >pdb|1NZY|A Chain A, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269 | Back alignment and structure |
|
| >pdb|1NZY|B Chain B, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269 | Back alignment and structure |
|
| >pdb|2EJ5|A Chain A, Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydratase Subunit Ii) From Geobacillus Kaustophilus Length = 257 | Back alignment and structure |
|
| >pdb|3M6M|A Chain A, Crystal Structure Of Rpff Complexed With Rec Domain Of Rpfc Length = 305 | Back alignment and structure |
|
| >pdb|3QRE|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase Echa12_1 From Mycobacterium Marinum Length = 298 | Back alignment and structure |
|
| >pdb|3I47|A Chain A, Crystal Structure Of Putative Enoyl Coa HydrataseISOMERASE (Crotonase) From Legionella Pneumophila Subsp. Pneumophila Str. Philadelphia 1 Length = 268 | Back alignment and structure |
|
| >pdb|3SWX|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 265 | Back alignment and structure |
|
| >pdb|3FDU|A Chain A, Crystal Structure Of A Putative Enoyl-Coa HydrataseISOMERASE FROM Acinetobacter Baumannii Length = 266 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A Length = 272 | Back alignment and structure |
|---|
Score = 230 bits (590), Expect = 3e-77
Identities = 82/175 (46%), Positives = 120/175 (68%), Gaps = 5/175 (2%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MSPSEIHFYVNTLRSTFS 59
+++ L A + + D ++IRS VP +FCAGADLK MS SE+ +V+ +R+ +
Sbjct: 40 LIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVIN 99
Query: 60 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 119
+ LP+PTIA IDG ALGGGLE+ALACD+R+ +A +GL ET LAIIPG GGTQRLPR
Sbjct: 100 DIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPR 159
Query: 120 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ----AQLKALEIAQEINQK 170
+G S+AK++IF+ R + GK+A ++GL+++ + Q A KAL++A+E +
Sbjct: 160 AIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQ 214
|
| >3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} Length = 265 | Back alignment and structure |
|---|
Score = 230 bits (589), Expect = 3e-77
Identities = 82/171 (47%), Positives = 116/171 (67%), Gaps = 1/171 (0%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MSPSEIHFYVNTLRSTFS 59
+L L++ I+E+++ VV++ + K FCAGADLK M+ ++ V+ +R+T
Sbjct: 37 LLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSMIRTTME 96
Query: 60 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 119
+E LP P IA I+G ALGGG E++LACD RI E+A LGL ET LAIIPGAGGTQRLPR
Sbjct: 97 MVEQLPQPVIAAINGIALGGGTELSLACDFRIAAESASLGLTETTLAIIPGAGGTQRLPR 156
Query: 120 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
L+G AK++I+TGR++S ++A GLV + VP + KA+EIA++I
Sbjct: 157 LIGVGRAKELIYTGRRISAQEAKEYGLVEFVVPVHLLEEKAIEIAEKIASN 207
|
| >2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} Length = 265 | Back alignment and structure |
|---|
Score = 212 bits (542), Expect = 4e-70
Identities = 64/172 (37%), Positives = 93/172 (54%), Gaps = 2/172 (1%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MSPSEIHFYVNTLRSTFS 59
+ A + I D VV++ S VPK F AGAD+ L+ P + T
Sbjct: 36 FYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAGADINFLRSADPRFKTQFCLFCNETLD 95
Query: 60 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGE-AALLGLPETGLAIIPGAGGTQRLP 118
+ P IA ++G +GGGLEMALACDLR G+ A +GLPE L ++ G GGTQRL
Sbjct: 96 KIARSPQVYIACLEGHTVGGGLEMALACDLRFMGDEAGKIGLPEVSLGVLAGTGGTQRLA 155
Query: 119 RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
RL+G S A D+ TG ++ ++A+ +GLVN P + + + E A+++
Sbjct: 156 RLIGYSRALDMNITGETITPQEALEIGLVNRVFPQAETRERTREYARKLANS 207
|
| >4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} Length = 277 | Back alignment and structure |
|---|
Score = 205 bits (523), Expect = 4e-67
Identities = 51/171 (29%), Positives = 85/171 (49%), Gaps = 2/171 (1%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MSPSEIHFYVNTLRSTFS 59
+ R + A + + V++ ++F AG D+ L+ ++ E
Sbjct: 51 VYREIVAAADELGRRDDIGAVVLFGG-HEIFSAGDDMPELRTLNAPEADTAARVRLEAID 109
Query: 60 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 119
+ A+P PT+A + G ALG GL +ALA D R+ G+ G E +IPG GG RL R
Sbjct: 110 AVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDNVKFGATEILAGLIPGGGGMGRLTR 169
Query: 120 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
+VG S AK+++F+GR ++A++LGL++ V A+ A+ +
Sbjct: 170 VVGSSRAKELVFSGRFFDAEEALALGLIDDMVAPDDVYDSAVAWARRYLEC 220
|
| >1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A Length = 260 | Back alignment and structure |
|---|
Score = 203 bits (518), Expect = 1e-66
Identities = 49/173 (28%), Positives = 74/173 (42%), Gaps = 3/173 (1%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MSPSEIHFYVNTLRSTFS 59
L L + E + D S V++ S P VF AG DL + SP+ Y ++ +
Sbjct: 32 FLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSPAHYAGYWKAVQELWL 91
Query: 60 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAA--LLGLPETGLAIIPGAGGTQRL 117
L + ++ I+GA GG +AL CD RI + +GL ET L II L
Sbjct: 92 RLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTL 151
Query: 118 PRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
+G A+ + G +A+ +G+V+ VP Q Q AL +
Sbjct: 152 ENTIGHRAAERALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALSAIAQWMAI 204
|
| >1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* Length = 261 | Back alignment and structure |
|---|
Score = 201 bits (513), Expect = 1e-65
Identities = 41/170 (24%), Positives = 80/170 (47%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSF 60
+ L A ++ +++ S KVF AG D+ L + Y + LR
Sbjct: 32 FIDDLMQALSDLNRPEIRCIILRAPSGSKVFSAGHDIHELPSGGRDPLSYDDPLRQITRM 91
Query: 61 LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRL 120
++ P P I++++G+ GG EM ++ DL I + + L + G L R
Sbjct: 92 IQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRD 151
Query: 121 VGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
G + K++IFT ++ + A+++G++N+ V + + L++A I++K
Sbjct: 152 AGFHIVKELIFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEK 201
|
| >3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} Length = 275 | Back alignment and structure |
|---|
Score = 200 bits (511), Expect = 2e-65
Identities = 55/171 (32%), Positives = 80/171 (46%), Gaps = 4/171 (2%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MSPSEIHFYVNTLRSTFS 59
++ LK I V+I F AG DL L+ +E + T F
Sbjct: 44 LMAALKDCLTDI--PDQIRAVVIHGI-GDHFSAGLDLSELRERDATEGLVHSQTWHRVFD 100
Query: 60 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 119
++ +P IA + GA +GGGLE+A A +R+ +A LPE I G GG+ RLPR
Sbjct: 101 KIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYYALPEGSRGIFVGGGGSVRLPR 160
Query: 120 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
L+G + D++ TGR S + + G Y + G A KALE+ + Q
Sbjct: 161 LIGVARMADMMLTGRVYSAAEGVVHGFSQYLIENGSAYDKALELGNRVAQN 211
|
| >3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} Length = 287 | Back alignment and structure |
|---|
Score = 196 bits (500), Expect = 2e-63
Identities = 54/174 (31%), Positives = 83/174 (47%), Gaps = 7/174 (4%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLK------VLQMSPSEIHFYVNTL 54
M+R L+ T+++DSS V++ S+ P+ F A D++ LQ + VN
Sbjct: 36 MMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIGEKMDALQELAASAPADVNVF 95
Query: 55 RSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRIC-GEAALLGLPETGLAIIPGAGG 113
++ + P TI + G A GGG E A D+ E A LG E + IIPG GG
Sbjct: 96 QAVGELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAAAETAGLGQIEALMGIIPGGGG 155
Query: 114 TQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 167
TQ L VG++ A +++ T + A S G +N +PA + +A+ I
Sbjct: 156 TQYLRGRVGRNRALEVVLTADLFDAETAASYGWINRALPADELDEYVDRVARNI 209
|
| >3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} Length = 289 | Back alignment and structure |
|---|
Score = 195 bits (498), Expect = 4e-63
Identities = 52/175 (29%), Positives = 75/175 (42%), Gaps = 5/175 (2%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MSPSEI---HFYVNTLRS 56
++R L E ++ ++ VV+ S+ F D+ + + +L
Sbjct: 35 VVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKVPEYTAEAAKAGGPGDASLGM 94
Query: 57 TFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICG-EAALLGLPETGLAIIPGAGGTQ 115
F L LP TIA + G A G G E LACD+R E A+LG PE G+ PGAG Q
Sbjct: 95 LFRKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASRENAILGQPEVGIGAPPGAGAIQ 154
Query: 116 RLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
L RL+G+ A + + T A G VN VP + IA ++
Sbjct: 155 HLTRLLGRGRALEAVLTSSDFDADLAERYGWVNRAVPDAELDEFVAGIAARMSGF 209
|
| >2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A Length = 258 | Back alignment and structure |
|---|
Score = 193 bits (494), Expect = 6e-63
Identities = 55/171 (32%), Positives = 91/171 (53%), Gaps = 4/171 (2%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MSPSEIHFYVNTLRSTFS 59
M+ + A E + V+++ + F AGAD++ + P + + +
Sbjct: 33 MVAEIVAAVEAFDRNEKVRVIVLTGR-GRAFAAGADIQEMAKDDPIRL--EWLNQFADWD 89
Query: 60 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 119
L + P IA ++G ALGGG E+AL+CDL + AA G PE L ++PGAGGTQRL +
Sbjct: 90 RLSIVKTPMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEVNLGVMPGAGGTQRLTK 149
Query: 120 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
L+G A + ++TG ++S K+A LG+VN V + + +A + ++
Sbjct: 150 LIGPKRALEWLWTGARMSAKEAEQLGIVNRVVSPELLMEETMRLAGRLAEQ 200
|
| >3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} Length = 261 | Back alignment and structure |
|---|
Score = 193 bits (493), Expect = 9e-63
Identities = 62/172 (36%), Positives = 95/172 (55%), Gaps = 3/172 (1%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MSPSEIHF-YVNTLRSTF 58
++ + + + +D + VV+I + F AGAD+K ++ ++ + TF
Sbjct: 33 VMHDVTELIDQVEKDDNIRVVVIHGE-GRFFSAGADIKEFTSVTEAKQATELAQLGQVTF 91
Query: 59 SFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLP 118
+E P IA I GAALGGGLE A++C +R E+A LGLPE L +IPG GTQRLP
Sbjct: 92 ERVEKCSKPVIAAIHGAALGGGLEFAMSCHMRFATESAKLGLPELTLGLIPGFAGTQRLP 151
Query: 119 RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
R VGK+ A +++ T ++G +A+ GLVN L++A++I K
Sbjct: 152 RYVGKAKACEMMLTSTPITGAEALKWGLVNGVFAEETFLDDTLKVAKQIAGK 203
|
| >1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* Length = 260 | Back alignment and structure |
|---|
Score = 192 bits (490), Expect = 3e-62
Identities = 64/171 (37%), Positives = 95/171 (55%), Gaps = 4/171 (2%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MSPSEIHFYVNTLRSTFS 59
++ L A ET ED + +++ K F AGAD+K +Q + + Y S +
Sbjct: 35 LIEELNQALETFEEDPAVGAIVLTGG-EKAFAAGADIKEMQNRTFQDC--YSGKFLSHWD 91
Query: 60 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 119
+ + P IA ++G ALGGG E+A+ CD+ GE A G PE L IPGAGGTQRL R
Sbjct: 92 HITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTR 151
Query: 120 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
VGKS+A +++ TG ++S +DA GLV+ P +A++ A++I
Sbjct: 152 AVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANN 202
|
| >3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* Length = 278 | Back alignment and structure |
|---|
Score = 192 bits (490), Expect = 5e-62
Identities = 61/171 (35%), Positives = 94/171 (54%), Gaps = 4/171 (2%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MSPSEIHFYVNTLRSTFS 59
++ + A + +D ++I S K F AGAD+K + ++ ++ + +T+
Sbjct: 53 VMNEVTSAATELDDDPDIGAIIITGS-AKAFAAGADIKEMADLTFADA--FTADFFATWG 109
Query: 60 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 119
L A+ PTIA + G ALGGG E+A+ CD+ I + A G PE L ++PG GG+QRL R
Sbjct: 110 KLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTR 169
Query: 120 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
+GK+ A D+I TGR + +A GLV+ VPA +A A I+Q
Sbjct: 170 AIGKAKAMDLILTGRTMDAAEAERSGLVSRVVPADDLLTEARATATTISQM 220
|
| >3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} Length = 263 | Back alignment and structure |
|---|
Score = 190 bits (485), Expect = 1e-61
Identities = 61/171 (35%), Positives = 91/171 (53%), Gaps = 4/171 (2%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MSPSEIHFYVNTLRSTFS 59
+ + A D +++ S + F AGAD+ + ++P + L S +
Sbjct: 38 LEAEVLDAARDFDADLEIGAIVVTGS-ERAFAAGADIAEMVTLTPHQA--RERNLLSGWD 94
Query: 60 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 119
L + P +A + G ALGGG E+A+ CDL I + A G PE L I+PG GGTQRL R
Sbjct: 95 SLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADTARFGQPEITLGILPGLGGTQRLTR 154
Query: 120 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
VGK+ A D+ TGR ++ ++A +GLV+ VPA +AL +AQ I +
Sbjct: 155 AVGKAKAMDLCLTGRSLTAEEAERVGLVSRIVPAADLLDEALAVAQRIARM 205
|
| >3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} Length = 265 | Back alignment and structure |
|---|
Score = 187 bits (478), Expect = 2e-60
Identities = 55/172 (31%), Positives = 79/172 (45%), Gaps = 3/172 (1%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQM--SPSEIHFYVNTLRSTF 58
M+ A++ I D ++ + +C G DL M S T+
Sbjct: 37 MVSQFAAAWDEIDHDDGIRAAILTGA-GSAYCVGGDLSDGWMVRDGSAPPLDPATIGKGL 95
Query: 59 SFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLP 118
L P IA ++GA LGGG EM D+R+ E A GLPE ++PGAG RL
Sbjct: 96 LLSHTLTKPLIAAVNGACLGGGCEMLQQTDIRVSDEHATFGLPEVQRGLVPGAGSMVRLK 155
Query: 119 RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
R + + A ++I TG ++ +A GLV + VPAG A KA +A I +
Sbjct: 156 RQIPYTKAMEMILTGEPLTAFEAYHFGLVGHVVPAGTALDKARSLADRIVRN 207
|
| >3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A Length = 305 | Back alignment and structure |
|---|
Score = 186 bits (475), Expect = 1e-59
Identities = 40/186 (21%), Positives = 73/186 (39%), Gaps = 12/186 (6%)
Query: 1 MLRGLKHAFETISEDSSAN----VVMIRSSVPKVFCAGADLKVLQ--------MSPSEIH 48
++ + + + + ++ +S VF G DL + +
Sbjct: 64 LVDDITGYQTNLGQRLNTAGVLAPHVVLASDSDVFNLGGDLALFCQLIREGDRARLLDYA 123
Query: 49 FYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAII 108
F +IA++ G ALGGG E AL+C I E ++GLPE +
Sbjct: 124 QRCVRGVHAFHVGLGARAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDLF 183
Query: 109 PGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEIN 168
PG G + + + +A+ I+ G S + + +GLV+ VP GQ ++ +E
Sbjct: 184 PGMGAYSFMCQRISAHLAQKIMLEGNLYSAEQLLGMGLVDRVVPRGQGVAAVEQVIRESK 243
Query: 169 QKVQSV 174
+ +
Sbjct: 244 RTPHAW 249
|
| >3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A Length = 256 | Back alignment and structure |
|---|
Score = 184 bits (470), Expect = 2e-59
Identities = 50/170 (29%), Positives = 75/170 (44%), Gaps = 9/170 (5%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSF 60
+ A D +VV++ + VFCAG DLK ++ + L
Sbjct: 37 LRSTFFRALSDAQNDDDVDVVIVTGA-DPVFCAGLDLK--ELGDT------TELPDISPK 87
Query: 61 LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRL 120
+ P I I+GAA+ GGLE+AL CD+ I E A + ++P G + RLP+
Sbjct: 88 WPDMTKPVIGAINGAAVTGGLELALYCDILIASENAKFADTHARVGLMPTWGLSVRLPQK 147
Query: 121 VGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
VG +A+ + TG +S +DA+ GLV V A +A I
Sbjct: 148 VGVGLARRMSLTGDYLSAQDALRAGLVTEVVAHDDLLTAARRVAASIVGN 197
|
| >2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* Length = 276 | Back alignment and structure |
|---|
Score = 185 bits (472), Expect = 2e-59
Identities = 50/176 (28%), Positives = 82/176 (46%), Gaps = 7/176 (3%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ------MSPSEIHFYVNTL 54
+ R + ET+ +D +A V+++ + + + AG DLK +
Sbjct: 37 LNREMIDVLETLEQDPAAGVLVLTGA-GEAWTAGMDLKEYFREVDAGPEILQEKIRREAS 95
Query: 55 RSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGT 114
+ + L PTIA+++G GGG +ACDL IC + A GL E I PG +
Sbjct: 96 QWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEATFGLSEINWGIPPGNLVS 155
Query: 115 QRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
+ + VG + I TG+ G+ A +GLVN VP Q + +E+A+ + +K
Sbjct: 156 KAMADTVGHRQSLMYIMTGKTFGGQKAAEMGLVNESVPLAQLREVTIELARNLLEK 211
|
| >3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} Length = 232 | Back alignment and structure |
|---|
Score = 183 bits (468), Expect = 3e-59
Identities = 35/168 (20%), Positives = 65/168 (38%), Gaps = 4/168 (2%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSF 60
++ A + +D + ++I + P + G DLKV+ S V +
Sbjct: 33 VIIAFNAALDQAEKDRA---IVIVTGQPGILSGGYDLKVMTSSAEAAINLVAQGSTLARR 89
Query: 61 LEALPIPTIAVIDGAALGGGLEMALACDLRICG-EAALLGLPETGLAIIPGAGGTQRLPR 119
+ + P P I G A+ G + L+ D RI +GL E + + G +
Sbjct: 90 MLSHPFPIIVACPGHAVAKGAFLLLSADYRIGVAGPFSIGLNEVQIGMTMHHAGIELARD 149
Query: 120 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 167
+ KS + + AM+ G ++ V + Q AL +A ++
Sbjct: 150 RLRKSAFNRSVINAEMFDPEGAMAAGFLDKVVSVEELQGAALAVAAQL 197
|
| >2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* Length = 250 | Back alignment and structure |
|---|
Score = 184 bits (469), Expect = 3e-59
Identities = 42/172 (24%), Positives = 72/172 (41%), Gaps = 3/172 (1%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MSPSE-IHFYVNTLRSTF 58
+ +K A + D S V++ + F AG D ++ +S SE I +++ + +
Sbjct: 28 LETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWIDRVIDLY 87
Query: 59 SFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLP 118
+ + PTIA +DG A+G G + AL D R+ A +PE I G L
Sbjct: 88 QAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGAAI-LG 146
Query: 119 RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
G S ++II+ + + + LVN V + A+ A +
Sbjct: 147 FTHGFSTMQEIIYQCQSLDAPRCVDYRLVNQVVESSALLDAAITQAHVMASY 198
|
| >3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} Length = 233 | Back alignment and structure |
|---|
Score = 182 bits (464), Expect = 1e-58
Identities = 32/168 (19%), Positives = 60/168 (35%), Gaps = 3/168 (1%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MSPSEIHFYVNTLRSTFS 59
M + L A + D+ ++I + +VF G DLKVL +
Sbjct: 32 MQQALNEAIDAADRDNVG-ALVIAGN-HRVFSGGFDLKVLTSGEAKPAIDMLRGGFELSY 89
Query: 60 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 119
L + P P + G A+ G + + D R+ A + E + + + L
Sbjct: 90 RLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYNVQANEVAIGMTIPYAAMEVLKL 149
Query: 120 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 167
+ S + + G+ A++ G ++ +A E A+E
Sbjct: 150 RLTPSAYQQAAGLAKTFFGETALAAGFIDEISLPEVVLSRAEEAAREF 197
|
| >3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} PDB: 3r9s_A 3r0o_A Length = 267 | Back alignment and structure |
|---|
Score = 183 bits (466), Expect = 1e-58
Identities = 58/170 (34%), Positives = 79/170 (46%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSF 60
+ G+ A E D V++ + K FCAGADLK + + H
Sbjct: 37 VSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIARRENLYHPDHPEWGFAGYV 96
Query: 61 LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRL 120
+ PTIA ++G ALGGG E+ALA DL + E A GLPE +I AGG R+
Sbjct: 97 RHFIDKPTIAAVNGTALGGGTELALASDLVVADERAQFGLPEVKRGLIAAAGGVFRIAEQ 156
Query: 121 VGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
+ + VA ++ TG +S A GL+N V AG AL +A I
Sbjct: 157 LPRKVAMRLLLTGEPLSAAAARDWGLINEVVEAGSVLDAALALASAITVN 206
|
| >3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} Length = 264 | Back alignment and structure |
|---|
Score = 180 bits (460), Expect = 1e-57
Identities = 46/165 (27%), Positives = 77/165 (46%), Gaps = 6/165 (3%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSF 60
++ L A D SA +++ FCAGADL + + Y + L
Sbjct: 49 LVEELTQAIRKA-GDGSARAIVLTGQ-GTAFCAGADLS--GDAFAA--DYPDRLIELHKA 102
Query: 61 LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRL 120
++A P+P + I+G A+G GL++A+ CDLR+ A P + + +RL L
Sbjct: 103 MDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGLALDNWSIRRLSSL 162
Query: 121 VGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQ 165
VG A+ ++ + K++ + A+ G+ N AQ A EIA+
Sbjct: 163 VGHGRARAMLLSAEKLTAEIALHTGMANRIGTLADAQAWAAEIAR 207
|
| >2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A Length = 243 | Back alignment and structure |
|---|
Score = 179 bits (457), Expect = 2e-57
Identities = 36/168 (21%), Positives = 69/168 (41%), Gaps = 7/168 (4%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MSPSEIHFYVNTLRSTFS 59
++ GL+H F ++++ VV++ F +GA + L + E+
Sbjct: 31 IVEGLRHCFSVVAQNQQYKVVILTGY-GNYFSSGASKEFLIRKTRGEVEV-----LDLSG 84
Query: 60 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 119
+ IP IA + G + GGGL + L D + + ++ P + L
Sbjct: 85 LILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQESVYATNFMKYGFTPVGATSLILRE 144
Query: 120 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 167
+G +A+++I+TG GK+ G+ V A ++ Q+I
Sbjct: 145 KLGSELAQEMIYTGENYRGKELAERGIPFPVVSRQDVLNYAQQLGQKI 192
|
| >3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} Length = 258 | Back alignment and structure |
|---|
Score = 179 bits (457), Expect = 2e-57
Identities = 39/172 (22%), Positives = 65/172 (37%), Gaps = 3/172 (1%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MSPSEIHFYVNTLRSTFS 59
ML L A + ++ + + F AG DL L + Y + +
Sbjct: 40 MLADLALAMGEYERSEESRCAVLFAH-GEHFTAGLDLMELAPKLAASGFRYPDGGVDPWG 98
Query: 60 FLEA-LPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLP 118
++ P + + G G+E+ L D+ + E I P G T R P
Sbjct: 99 VVQPRRSKPLVVAVQGTCWTAGIELMLNADIAVAARGTRFAHLEVLRGIPPLGGSTVRFP 158
Query: 119 RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
R G + A I TG + +A+ + L+ V G+ +ALE A+ I +
Sbjct: 159 RAAGWTDAMRYILTGDEFDADEALRMRLLTEVVEPGEELARALEYAERIARA 210
|
| >1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 Length = 253 | Back alignment and structure |
|---|
Score = 179 bits (456), Expect = 2e-57
Identities = 58/174 (33%), Positives = 89/174 (51%), Gaps = 6/174 (3%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ----MSPSEIHFYVNTLRS 56
M L A + + D V++ K F AGADL L+ + E + + +L
Sbjct: 27 MALSLLQALDDLEADPGVRAVVLTGR-GKAFSAGADLAFLERVTELGAEENYRHSLSLMR 85
Query: 57 TFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQR 116
F + P PT+A ++G A+ GG +ALACDL + E A LG E + + +
Sbjct: 86 LFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAA-LVSVI 144
Query: 117 LPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
L R VG+ AKD++ TGR V ++A +LGLVN P G+A +A +A+E+ +
Sbjct: 145 LVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRIAPPGKALEEAKALAEEVAKN 198
|
| >1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A Length = 275 | Back alignment and structure |
|---|
Score = 179 bits (457), Expect = 3e-57
Identities = 53/184 (28%), Positives = 90/184 (48%), Gaps = 15/184 (8%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPS------------EIH 48
R L F+ IS+DS V++ + K+F +G DL + +
Sbjct: 32 FWRELVECFQKISKDSDCRAVVVSGA-GKMFTSGIDLMDMASDILQPPGDDVARIAWYLR 90
Query: 49 FYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAII 108
++ + TF+ +E P P IA I G +GGG+++ ACD+R C + A + E + +
Sbjct: 91 DLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLA 150
Query: 109 PGAGGTQRLPRLVG-KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL-KALEIAQE 166
G QRLP+++G +S+ ++ FT RK+ +A+ GLV+ P L A +A +
Sbjct: 151 ADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAAD 210
Query: 167 INQK 170
I+ K
Sbjct: 211 ISSK 214
|
| >2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} Length = 273 | Back alignment and structure |
|---|
Score = 179 bits (456), Expect = 5e-57
Identities = 41/172 (23%), Positives = 79/172 (45%), Gaps = 2/172 (1%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MSPSEI-HFYVNTLRSTF 58
+ + AF +D + +V+++ FC+G D K +
Sbjct: 41 TVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRGHGGYVGEDQIPRLNVLDLQ 100
Query: 59 SFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLP 118
+ +P P IA++ G A+GGG + + CDL I + A+ G + G+ L
Sbjct: 101 RLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLA 160
Query: 119 RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
R+VG A++I + R+ + ++A+ +GLVN VP + + + ++ +EI +
Sbjct: 161 RIVGHKKAREIWYLCRQYNAQEALDMGLVNTVVPLEKVEDETVQWCKEIMKH 212
|
| >3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} Length = 265 | Back alignment and structure |
|---|
Score = 178 bits (454), Expect = 7e-57
Identities = 46/172 (26%), Positives = 65/172 (37%), Gaps = 3/172 (1%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLK-VLQMSPSEIHFYVNTLRSTFS 59
ML L A D+ ++ +F AG DL V + +
Sbjct: 37 MLEELALALGEYETDTDLRAAVLYGE-GPLFTAGLDLASVAAEIQGGASLTPEGGINPWQ 95
Query: 60 F-LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLP 118
L P + + G L G+E+ALA D+ I E A E I P G T R P
Sbjct: 96 VDGRQLSKPLLVAVHGKVLTLGIELALAADIVIADETATFAQLEVNRGIYPFGGATIRFP 155
Query: 119 RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
R G A + T +A +G+V VP G+ A+ IAQ I ++
Sbjct: 156 RTAGWGNAMRWMLTADTFDAVEAHRIGIVQEIVPVGEHVDTAIAIAQTIARQ 207
|
| >3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} Length = 254 | Back alignment and structure |
|---|
Score = 178 bits (453), Expect = 8e-57
Identities = 31/171 (18%), Positives = 60/171 (35%), Gaps = 6/171 (3%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MSPSEIHFYVNTLRSTFS 59
++ L + +++ + + F AG D + S ++ + +
Sbjct: 35 LVEALIDGVDAA-HREQVPLLVFAGA-GRNFSAGFDFTDYETQSEGDLLLRMVRIEMLLQ 92
Query: 60 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 119
+ P T+A+ G G G+++ AC R C A +P ++ GT+R
Sbjct: 93 RVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGFRMPGLKFGLVL---GTRRFRD 149
Query: 120 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
+VG A I+ + R +A +G V Q A+
Sbjct: 150 IVGADQALSILGSARAFDADEARRIGFVRDCAAQAQWPALIDAAAEAATAL 200
|
| >3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A 2iex_A Length = 289 | Back alignment and structure |
|---|
Score = 178 bits (454), Expect = 1e-56
Identities = 42/173 (24%), Positives = 78/173 (45%), Gaps = 3/173 (1%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ---MSPSEIHFYVNTLRST 57
++ + A D + V+++ + K FC+G D KV + + +
Sbjct: 56 TVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLNVLDF 115
Query: 58 FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRL 117
+ P P +A++ G ++GGG + + CDL I + A+ G + G G +
Sbjct: 116 QRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYM 175
Query: 118 PRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
R+VG+ A++I F R+ K A+ +GLVN VP + + + +E+ Q
Sbjct: 176 ARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWCREMLQN 228
|
| >4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} Length = 278 | Back alignment and structure |
|---|
Score = 177 bits (451), Expect = 3e-56
Identities = 53/174 (30%), Positives = 84/174 (48%), Gaps = 5/174 (2%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ----MSPSEIHFYVNTLRS 56
M++ + A++ + D ++ + FCAG DLK + Y +
Sbjct: 48 MMQIMVEAWDRVDNDPDIRCCILTGA-GGYFCAGMDLKAATKKPPGDSFKDGSYDPSRID 106
Query: 57 TFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQR 116
L P IA ++G A+ GG E+ D+R+ E+A G+ E ++ P G R
Sbjct: 107 ALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAESAKFGISEAKWSLYPMGGSAVR 166
Query: 117 LPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
L R + +VA D++ TGR ++ +A +GLV + VP GQA KALEIA+ I
Sbjct: 167 LVRQIPYTVACDLLLTGRHITAAEAKEMGLVGHVVPDGQALTKALEIAEIIAAN 220
|
| >3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} Length = 263 | Back alignment and structure |
|---|
Score = 176 bits (448), Expect = 5e-56
Identities = 41/173 (23%), Positives = 75/173 (43%), Gaps = 6/173 (3%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-----MSPSEIHFYVNTLR 55
+ L A + ++S + ++++S F +G L+ L S + ++ L
Sbjct: 32 LGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDLLICASDQSDVRLREVLHVLN 91
Query: 56 STFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQ 115
+ P T+A+I+G A GGG M LACD RI A + I P G +
Sbjct: 92 HCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRAKFLENFHKMGISPDLGASY 151
Query: 116 RLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA-QLKALEIAQEI 167
LPR++G +++ G+ + ++A+ LGL+ Q Q + + +
Sbjct: 152 FLPRIIGYEQTMNLLLEGKLFTSEEALRLGLIQEICENKQELQERVKNYLKAV 204
|
| >3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} Length = 265 | Back alignment and structure |
|---|
Score = 175 bits (447), Expect = 9e-56
Identities = 52/170 (30%), Positives = 82/170 (48%), Gaps = 5/170 (2%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSF 60
+ R L A + + D+ +V ++ + FCAG DLK + E V R
Sbjct: 43 VSRALADAMDRLDADAGLSVGILTGA-GGSFCAGMDLK--AFARGE--NVVVEGRGLGFT 97
Query: 61 LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRL 120
P IA ++G AL GG E+ALA DL + + G+PE ++ G GG RLP
Sbjct: 98 ERPPAKPLIAAVEGYALAGGTELALATDLIVAARDSAFGIPEVKRGLVAGGGGLLRLPER 157
Query: 121 VGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
+ ++A ++ TG +S + A +LG+VN G A A+ +A++I
Sbjct: 158 IPYAIAMELALTGDNLSAERAHALGMVNVLAEPGAALDAAIALAEKITAN 207
|
| >3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} PDB: 3q1t_A Length = 272 | Back alignment and structure |
|---|
Score = 175 bits (447), Expect = 1e-55
Identities = 44/170 (25%), Positives = 71/170 (41%), Gaps = 4/170 (2%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ---MSPSEIHFYVNTLRST 57
M R L + I D VV++R K F +G +++ + R
Sbjct: 41 MHRDLADVWPVIDRDPDVRVVLVRGE-GKAFSSGGSFELIDETIGDYEGRIRIMREARDL 99
Query: 58 FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRL 117
L L P ++ I G A+G GL +AL D+ + A + T L + G
Sbjct: 100 VLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVASATAKIIDGHTKLGVAAGDHAAICW 159
Query: 118 PRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 167
P LVG + AK + T +SG++A +GLV+ V + A +A+ +
Sbjct: 160 PLLVGMAKAKYYLLTCETLSGEEAERIGLVSTCVDDDEVLPTATRLAENL 209
|
| >3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A Length = 262 | Back alignment and structure |
|---|
Score = 174 bits (444), Expect = 3e-55
Identities = 64/167 (38%), Positives = 85/167 (50%), Gaps = 2/167 (1%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSF 60
L AF D A+V ++ FCAGADLK + + + +
Sbjct: 39 TAAALLAAFTEFDADPEASVAVLWGD-NGTFCAGADLKAMG-TDRGNELHPHGPGPMGPS 96
Query: 61 LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRL 120
L P IA I G A+ GG+E+AL CDLR+ E A+LG+ + GGT RLPRL
Sbjct: 97 RLRLSKPVIAAISGHAVAGGIELALWCDLRVVEEDAVLGVFCRRWGVPLIDGGTIRLPRL 156
Query: 121 VGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 167
+G S A D+I TGR V +A+ +GLVN V GQA+ A +A EI
Sbjct: 157 IGHSRAMDLILTGRPVHANEALDIGLVNRVVARGQAREAAETLAAEI 203
|
| >2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D Length = 263 | Back alignment and structure |
|---|
Score = 174 bits (443), Expect = 4e-55
Identities = 43/173 (24%), Positives = 72/173 (41%), Gaps = 5/173 (2%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ--MSPSEIHFYVNTLRSTF 58
R AF IS D VV++ S + A D L +P E +
Sbjct: 52 THREFPDAFYDISRDRDNRVVILTGS-GDAWMAEIDFPSLGDVTNPREWDKTYWEGKKVL 110
Query: 59 SFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAA-LLGLPETGLAIIPGAGGTQRL 117
L + +P I+ ++GAAL E L D+ + E +P I+PG G
Sbjct: 111 QNLLDIEVPVISAVNGAALLHS-EYILTTDIILASENTVFQDMPHLNAGIVPGDGVHILW 169
Query: 118 PRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
P +G + +FT K++ + A L +V+ +P + +A EIA+ + ++
Sbjct: 170 PLALGLYRGRYFLFTQEKLTAQQAYELNVVHEVLPQSKLMERAWEIARTLAKQ 222
|
| >3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} Length = 256 | Back alignment and structure |
|---|
Score = 173 bits (442), Expect = 5e-55
Identities = 57/170 (33%), Positives = 83/170 (48%), Gaps = 6/170 (3%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSF 60
+ +GL A + + + +V +I + FCAG DLK E V + R
Sbjct: 35 VSQGLAAAADQLDSSADLSVAIITGA-GGNFCAGMDLK--AFVSGE---AVLSERGLGFT 88
Query: 61 LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRL 120
P IA ++G AL GG E+ L+CDL + G +A G+PE ++ GAGG RLP
Sbjct: 89 NVPPRKPIIAAVEGFALAGGTELVLSCDLVVAGRSAKFGIPEVKRGLVAGAGGLLRLPNR 148
Query: 121 VGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
+ VA ++ TG + +DA G +N V GQA ALE+A +I
Sbjct: 149 IPYQVAMELALTGESFTAEDAAKYGFINRLVDDGQALDTALELAAKITAN 198
|
| >3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} Length = 265 | Back alignment and structure |
|---|
Score = 173 bits (441), Expect = 7e-55
Identities = 49/167 (29%), Positives = 83/167 (49%), Gaps = 1/167 (0%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSF 60
+ R L A++ + +D + V+++ + P FC+GA + + + +
Sbjct: 35 LGRQLGAAYQRLDDDPAVRVIVLTGA-PPAFCSGAQISAAAETFAAPRNPDFSASPVQPA 93
Query: 61 LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRL 120
L P IA ++G A+G G+ +AL D+RI E +P+ + P A LPRL
Sbjct: 94 AFELRTPVIAAVNGHAIGIGMTLALHADIRILAEEGRYAIPQVRFGVAPDALAHWTLPRL 153
Query: 121 VGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 167
VG +VA +++ TG S + A+ GL N +PAG+ AL +A +I
Sbjct: 154 VGTAVAAELLLTGASFSAQRAVETGLANRCLPAGKVLGAALRMAHDI 200
|
| >3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} Length = 274 | Back alignment and structure |
|---|
Score = 172 bits (439), Expect = 2e-54
Identities = 39/182 (21%), Positives = 77/182 (42%), Gaps = 16/182 (8%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSF 60
M+ L+ A+ D ++++ + + FC+GAD+K ++ Y ST+
Sbjct: 39 MITELRAAYHEAENDDRVWLLVVTGT-GRAFCSGADVK--EIPEDGKVIYERPYLSTYDQ 95
Query: 61 ----------LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPG 110
+ P + ++G G G++ D+ I E A P + ++ G
Sbjct: 96 WEAPQEGTPPFRTMAKPVLTAVNGICCGAGMDWVTTTDIVIASEQATFFDPHVSIGLVAG 155
Query: 111 AGGTQRLPRLVGKSVAKDIIFTGRK--VSGKDAMSLGLVNYYVPAGQAQLKALEIAQEIN 168
R+ R++ +S+A + G+ +S + A LGL++ V + +A EIA +N
Sbjct: 156 -RELVRVSRVLPRSIALRMALMGKHERMSAQRAYELGLISEIVEHDRLLERAHEIADIVN 214
Query: 169 QK 170
Sbjct: 215 SN 216
|
| >1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 Length = 264 | Back alignment and structure |
|---|
Score = 171 bits (437), Expect = 3e-54
Identities = 44/170 (25%), Positives = 72/170 (42%), Gaps = 4/170 (2%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ---MSPSEIHFYVNTLRST 57
+ RGL + + V++R VF AG +++ S + R
Sbjct: 38 LHRGLARVWRDLEAVEGVRAVLLRGE-GGVFSAGGSFGLIEEMRASHEALLRVFWEARDL 96
Query: 58 FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRL 117
P P +A ++ A+G GL +ALA D+ + G+ L L + G
Sbjct: 97 VLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLW 156
Query: 118 PRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 167
P LVG + AK + ++G++A LGLV V + KALE+A+ +
Sbjct: 157 PLLVGMAKAKYHLLLNEPLTGEEAERLGLVALAVEDEKVYEKALEVAERL 206
|
| >2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A Length = 261 | Back alignment and structure |
|---|
Score = 171 bits (435), Expect = 6e-54
Identities = 39/172 (22%), Positives = 73/172 (42%), Gaps = 7/172 (4%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-----MSPSEIHFYVNTLR 55
++R ++ A T + D S +V++ + VFC G D E +R
Sbjct: 34 VMREVQSALSTAAADDSK-LVLLSAV-GSVFCCGLDFIYFIRRLTDDRKRESTKMAEAIR 91
Query: 56 STFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQ 115
+ + P I ++G A+G G + CD+ E A P T P T
Sbjct: 92 NFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTV 151
Query: 116 RLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 167
P+++G + A +++ +GRK++ ++A GLV+ G + + +E+
Sbjct: 152 MFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVMVRIKEL 203
|
| >3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} Length = 290 | Back alignment and structure |
|---|
Score = 171 bits (436), Expect = 7e-54
Identities = 54/176 (30%), Positives = 79/176 (44%), Gaps = 10/176 (5%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ--------MSPSEIHFYVN 52
++ K IS D+ V+I + K FC+GAD K P+ +
Sbjct: 52 VMLPFKQMLVDISHDNDVRAVVITGA-GKGFCSGADQKSAGPIPHIGGLTQPTIALRSME 110
Query: 53 TLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPG-A 111
L L + P IA I+GAA+GGGL +ALACD+R+ + A +
Sbjct: 111 LLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQDAYFRAAGINNGLTASEL 170
Query: 112 GGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 167
G + LPR +G S A DI+ TGR V +A +GLV+ V + + I + I
Sbjct: 171 GLSYLLPRAIGTSRASDIMLTGRDVDADEAERIGLVSRKVASESLLEECYAIGERI 226
|
| >1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A Length = 257 | Back alignment and structure |
|---|
Score = 170 bits (433), Expect = 8e-54
Identities = 37/172 (21%), Positives = 74/172 (43%), Gaps = 4/172 (2%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MSPSEIHFYVNTLRSTFS 59
L + F I+ D VV++ + FC D +P + + + +
Sbjct: 44 AHDELAYCFHDIACDRENKVVILTGT-GPSFCNEIDFTSFNLGTPHDWDEIIFEGQRLLN 102
Query: 60 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLG-LPETGLAIIPGAGGTQRLP 118
L ++ +P IA ++G E+ + D+ + E+A P I+PG G P
Sbjct: 103 NLLSIEVPVIAAVNGPV-TNAPEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWP 161
Query: 119 RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
++G + + + TG+++ + A+ G VN + + +A E+A+ I +K
Sbjct: 162 HVLGSNRGRYFLLTGQELDARTALDYGAVNEVLSEQELLPRAWELARGIAEK 213
|
| >3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii} Length = 266 | Back alignment and structure |
|---|
Score = 170 bits (433), Expect = 1e-53
Identities = 43/173 (24%), Positives = 71/173 (41%), Gaps = 6/173 (3%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSF 60
+ + A + ++ VV++R + F AG D+K + F
Sbjct: 33 LYLWIAKALDEADQNKDVRVVVLRGA-EHDFTAGNDMKDFMGFVQNPNAGPAGQVPPFVL 91
Query: 61 LEAL---PIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRL 117
L++ P I + G A+G G+ + L DL AL +P L + P G +Q L
Sbjct: 92 LKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTALFQIPFVSLGLSPEGGASQLL 151
Query: 118 PRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
+ G A +++FT +K + + A+ GLVN V A A AQ +
Sbjct: 152 VKQAGYHKAAELLFTAKKFNAETALQAGLVNEIVEDAYAT--AQATAQHLTAL 202
|
| >2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} Length = 257 | Back alignment and structure |
|---|
Score = 170 bits (433), Expect = 1e-53
Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 1/167 (0%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSF 60
M + A + D + V+I + + FCAG DL + +
Sbjct: 31 MNAEVTKALKQAGADPNVRCVVITGA-GRAFCAGEDLSGVTEEMDHGDVLRSRYAPMMKA 89
Query: 61 LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRL 120
L L P +A ++GAA G G+ +ALACD R+ E A + ++P AG LPRL
Sbjct: 90 LHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAPAFIHVGLVPDAGHLYYLPRL 149
Query: 121 VGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 167
VG++ A ++ G KV+ ++A +LGL +P + + + A+ +
Sbjct: 150 VGRAKALELAVLGEKVTAEEAAALGLATKVIPLSDWEEEVKQFAERL 196
|
| >4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} Length = 275 | Back alignment and structure |
|---|
Score = 168 bits (427), Expect = 1e-52
Identities = 50/185 (27%), Positives = 85/185 (45%), Gaps = 7/185 (3%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVP-----KVFCAGADLKVLQ-MSPSEI-HFYVNT 53
+ L AF ED+ VV++ + P FC+G D V +
Sbjct: 38 TVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGDQSVRGEGGYIDDQGTPRLN 97
Query: 54 LRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGG 113
+ + ++P IA++ G A+GGG + L CDL I + A+ G + G G
Sbjct: 98 VLDLQRLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGFG 157
Query: 114 TQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQS 173
+ L R+VG+ A++I + R+ S ++A +G+VN VP + + + ++ A+EI K
Sbjct: 158 SSYLARIVGQKKAREIWYLCRQYSAQEAERMGMVNTVVPVDRLEEEGIQWAKEILSKSPL 217
Query: 174 VFRIL 178
R L
Sbjct: 218 AIRCL 222
|
| >2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 Length = 291 | Back alignment and structure |
|---|
Score = 168 bits (427), Expect = 1e-52
Identities = 37/172 (21%), Positives = 78/172 (45%), Gaps = 7/172 (4%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLK-----VLQMSPSEIHFYVNTLR 55
+++ + +A + + D S +V+ ++ VFC G D + + V+T++
Sbjct: 52 VIKEIVNALNSAAADDSK-LVLFSAA-GSVFCCGLDFGYFVKHLRNNRNTASLEMVDTIK 109
Query: 56 STFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQ 115
+ + P + ++G A+G G + CDL E A P T P +
Sbjct: 110 NFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSI 169
Query: 116 RLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 167
P+++GK+ A +++ GRK++ ++A + GLV+ G + + +E+
Sbjct: 170 TFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKEL 221
|
| >3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp} Length = 276 | Back alignment and structure |
|---|
Score = 167 bits (426), Expect = 2e-52
Identities = 39/170 (22%), Positives = 73/170 (42%), Gaps = 6/170 (3%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ---MSPSEIHFYVNTLRST 57
+ GL ++ +++D +A +I + + F AG D L+ + R
Sbjct: 56 LHVGLARLWQRLTDDPTARAAVITGA-GRAFSAGGDFGYLKELSADADLRAKTIRDGREI 114
Query: 58 FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRL 117
+ IP +A ++G A+G G + D+ E A L P + ++ GG
Sbjct: 115 VLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAENAYLADPHVQVGLVAADGGPLTW 174
Query: 118 PRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 167
P + +AK+ TG ++S + A+ LGL N+ +A+ A++I
Sbjct: 175 PLHISLLLAKEYALTGTRISAQRAVELGLANHVAD--DPVAEAIACAKKI 222
|
| >3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} Length = 268 | Back alignment and structure |
|---|
Score = 167 bits (425), Expect = 2e-52
Identities = 49/174 (28%), Positives = 82/174 (47%), Gaps = 6/174 (3%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ----MSPSEIHFYVNTLRS 56
+L ++ ++ D++ V++++++ K F AGADL +Q + E L +
Sbjct: 32 LLTEMRIRLDSAINDTNVRVIVLKAN-GKHFSAGADLTWMQSMANFTEEENLEDSLVLGN 90
Query: 57 TFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQR 116
+ P PTIA++ GAA GGG +A ACD+ I +A E L +IP A +
Sbjct: 91 LMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSARFCFSEVKLGLIP-AVISPY 149
Query: 117 LPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
+ R +G+ AK + + A SL LV + VP L+ A +I+
Sbjct: 150 VVRAIGERAAKMLFMSAEVFDATRAYSLNLVQHCVPDDTLLEFTLKYASQISNN 203
|
| >1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* Length = 269 | Back alignment and structure |
|---|
Score = 165 bits (421), Expect = 7e-52
Identities = 43/173 (24%), Positives = 74/173 (42%), Gaps = 7/173 (4%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ------MSPSEIHFYVNTL 54
++ + A ED S VMI + FCAG L+ +
Sbjct: 31 AMQEVTDALNRAEEDDSVGAVMITGA-EDAFCAGFYLREIPLDKGVAGVRDHFRIAALWW 89
Query: 55 RSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGT 114
+ + P +A I+G A GGGL ++LA D+ IC ++A + I +
Sbjct: 90 HQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATS 149
Query: 115 QRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 167
L R+VG A +++ T R + ++A GLV+ P + + A ++A+E+
Sbjct: 150 YSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAWKVAREL 202
|
| >3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} Length = 256 | Back alignment and structure |
|---|
Score = 165 bits (420), Expect = 7e-52
Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 3/172 (1%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ--MSPSEIHFYVNTLRSTF 58
+ A ++D VV++ S + F AG DL +Q ++ R
Sbjct: 34 LYDATAQALLDAADDPQVAVVLLTGS-GRGFSAGTDLAEMQARITDPNFSEGKFGFRGLI 92
Query: 59 SFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLP 118
L P P I ++G +G G + DL A L P T L + P A + LP
Sbjct: 93 KALAGFPKPLICAVNGLGVGIGATILGYADLAFMSSTARLKCPFTSLGVAPEAASSYLLP 152
Query: 119 RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
+LVG+ A ++ + + ++A+ +GLV + +A A+ + K
Sbjct: 153 QLVGRQNAAWLLMSSEWIDAEEALRMGLVWRICSPEELLPEARRHAEILAAK 204
|
| >2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* Length = 440 | Back alignment and structure |
|---|
Score = 169 bits (430), Expect = 2e-51
Identities = 43/195 (22%), Positives = 71/195 (36%), Gaps = 26/195 (13%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVP--------KVFCAGADLKVLQ----------- 41
+ ++ A + D V ++R V +VF AG +LK L
Sbjct: 195 QVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVFSAGINLKYLSQGGISLVDFLM 254
Query: 42 ------MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEA 95
+ N R + + P +A +DG A+GGG ++ L D +
Sbjct: 255 RRELGYIHKLVRGVLTNDDRPGWWHSPRIEKPWVAAVDGFAIGGGAQLLLVFDRVLASSD 314
Query: 96 ALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 155
A LP IIPG RL R G V++ +I GR++ K+ + LV+ V +
Sbjct: 315 AYFSLPAAKEGIIPG-AANLRLGRFAGPRVSRQVILEGRRIWAKEPEARLLVDEVVEPDE 373
Query: 156 AQLKALEIAQEINQK 170
++
Sbjct: 374 LDAAIERSLTRLDGD 388
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Length = 725 | Back alignment and structure |
|---|
Score = 171 bits (436), Expect = 1e-50
Identities = 64/176 (36%), Positives = 92/176 (52%), Gaps = 5/176 (2%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL----QMSPSEIHFYVNTLRS 56
+L LK +E + ++I + F G D+ + + E ++
Sbjct: 35 VLYNLKSNYEEALSRNDVKAIVITGA-KGRFSGGFDISGFGEMQKGNVKEPKAGYISIDI 93
Query: 57 TFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQR 116
LEA P++A IDG ALGGGLE+A+AC RI AA LGLPE L +IPG GGTQR
Sbjct: 94 ITDLLEAARKPSVAAIDGLALGGGLELAMACHARISAPAAQLGLPELQLGVIPGFGGTQR 153
Query: 117 LPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQ 172
LPRLVG + A ++I T + V ++ SLGL++ VP + A A +I + +
Sbjct: 154 LPRLVGLTKALEMILTSKPVKAEEGHSLGLIDAVVPPAELVTTARRWALDIVGRRK 209
|
| >2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Length = 556 | Back alignment and structure |
|---|
Score = 168 bits (426), Expect = 5e-50
Identities = 48/178 (26%), Positives = 76/178 (42%), Gaps = 11/178 (6%)
Query: 1 MLRGLKHAFETIS-EDSSANVVMIRSSVPKVFCAGADLKVLQ-MSPSEIHFYVNTLRSTF 58
+ L A + I E V++ S +VFC+GA++ +L + + + T
Sbjct: 59 VDIELHDAIQRIRFEHPEVRTVVLTSLKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETR 118
Query: 59 SFLE----ALPIPTIAVIDGAALGGGLEMALACDLRIC--GEAALLGLPETG-LAIIPGA 111
+ LE + +A ++GA GGG E+ALACD ++ + LPE L ++PG
Sbjct: 119 NGLEDSSRHSGLKFLAAVNGACAGGGYELALACDEIYLVDDRSSSVSLPEVPLLGVLPGT 178
Query: 112 GGTQRL--PRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 167
GG R+ R V A V G+ A + LV+ V Q A E+
Sbjct: 179 GGLTRVTDKRKVRHDRADIFCTVVEGVRGERAKAWRLVDEVVKPNQFDQAIQARALEL 236
|
| >2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Length = 556 | Back alignment and structure |
|---|
Score = 62.7 bits (152), Expect = 4e-12
Identities = 33/169 (19%), Positives = 58/169 (34%), Gaps = 20/169 (11%)
Query: 1 MLRGLKHAFETISED-SSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVN----TLR 55
R A ++ + + + R+ AD ++Q H++V LR
Sbjct: 309 FAREFDDAILSMRTNELAVGTWVFRTEGDARHLLAADASLMQHKD---HWFVRETIGLLR 365
Query: 56 STFSFLEALPIPTIAVID-GAALGGGL-EMALACDLRIC-------GEAALLGLPETGLA 106
T + ++ A+I+ G+ G E+A A D E + L E
Sbjct: 366 RTLARIDVSSRSLFALIEPGSCFAGTFAELAFAADRTYMAALPANEDEEPAITLSEVNFG 425
Query: 107 IIPGAGGTQRLP-RLVGKSVAKDIIF--TGRKVSGKDAMSLGLVNYYVP 152
+ P RL R ++ D + G+ + +A LGLV
Sbjct: 426 LYPMVTHQSRLARRFYEETEPLDAVRSRIGQAIKPVEAERLGLVTASPD 474
|
| >3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} Length = 298 | Back alignment and structure |
|---|
Score = 161 bits (410), Expect = 7e-50
Identities = 49/176 (27%), Positives = 73/176 (41%), Gaps = 10/176 (5%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPS---------EIHFYV 51
+ G A + D V+++ + FCAGA L + + +
Sbjct: 58 LAAGFYAAIDRAEADPGIRVIVLTGR-GRGFCAGAYLGSADAAAGYDKTMAKAKDANLAD 116
Query: 52 NTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGA 111
F+ L P IA I+G +G GL AL CD+R A +I
Sbjct: 117 LVGERPPHFVTMLRKPVIAAINGPCVGIGLTQALMCDVRFAAAGAKFAAVFARRGLIAEF 176
Query: 112 GGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 167
G + LPRL +VA D++ +GR ++A LGLV V Q +ALE A++I
Sbjct: 177 GISWILPRLTSWAVALDLLLSGRTFLAEEAAQLGLVKEVVTPEQLMPRALEYAEDI 232
|
| >3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} Length = 255 | Back alignment and structure |
|---|
Score = 159 bits (405), Expect = 2e-49
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 6/167 (3%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSF 60
ML L D S V++ + + FC+G DL + +
Sbjct: 34 MLEELSVHIRDAEADESVRAVLLTGA-GRAFCSGGDLTGGDTAGAADAA-----NRVVRA 87
Query: 61 LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRL 120
+ +LP P IA + GAA+G G +ALACDL + A+ L T + ++P G + LP L
Sbjct: 88 ITSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLAFTRVGLMPDGGASALLPLL 147
Query: 121 VGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 167
+G++ + T K+S A G++++ A + + ++ + +
Sbjct: 148 IGRARTSRMAMTAEKISAATAFEWGMISHITSADEYESVLTDVLRSV 194
|
| >3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} Length = 279 | Back alignment and structure |
|---|
Score = 159 bits (405), Expect = 2e-49
Identities = 39/173 (22%), Positives = 69/173 (39%), Gaps = 7/173 (4%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLK-----VLQMSPSEIHFYVNTLR 55
L+ +S + +++ + FC+G D+ L M + + +
Sbjct: 45 AYADLRDLLAELSRRRAVRALVLAGE-GRGFCSGGDVDEIIGATLSMDTARLLDFNRMTG 103
Query: 56 STFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPG-AGGT 114
+ P P IA + G A G G +ALA D R+ + T + + G G
Sbjct: 104 QVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPSTRFAFLFTRVGLSGGDMGAA 163
Query: 115 QRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 167
LPR+VG A ++ G V +A +GL++ G+A A +A+ +
Sbjct: 164 YLLPRVVGLGHATRLLMLGDTVRAPEAERIGLISELTEEGRADEAARTLARRL 216
|
| >3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A Length = 279 | Back alignment and structure |
|---|
Score = 159 bits (405), Expect = 2e-49
Identities = 49/176 (27%), Positives = 82/176 (46%), Gaps = 9/176 (5%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSF 60
+L L A+ +ED+ +V+++R++ K F AG DL+ P ++ + +
Sbjct: 48 LLDELDAAWTRAAEDNDVSVIVLRAN-GKHFSAGHDLRGGGPVPDKLTLEFIYAHESRRY 106
Query: 61 L------EALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGT 114
L +P P+IA + G + GGL + CDL I E AL P + I G
Sbjct: 107 LEYSLRWRNVPKPSIAAVQGRCISGGLLLCWPCDLIIAAEDALFSDPVVLMDI--GGVEY 164
Query: 115 QRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
+G AK+I+FTGR ++ ++ G+VN VP + + +A EI +
Sbjct: 165 HGHTWELGPRKAKEILFTGRAMTAEEVAQTGMVNRVVPRDRLDAETRALAGEIAKM 220
|
| >3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} Length = 263 | Back alignment and structure |
|---|
Score = 159 bits (403), Expect = 3e-49
Identities = 43/184 (23%), Positives = 73/184 (39%), Gaps = 9/184 (4%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-------MSPSEIHFYVNT 53
M+ L A D +V++I ++FCAG DLK + + +
Sbjct: 34 MIAALHDALRRAMGDDHVHVLVIHGP-GRIFCAGHDLKEIGRHRADPDEGRAFVTDLFEA 92
Query: 54 LRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGG 113
+ L P PTIA+++G A GL++ ACDL AA LP
Sbjct: 93 CSALMLDLAHCPKPTIALVEGIATAAGLQLMAACDLAYASPAARFCLPGVQNGGFCTTPA 152
Query: 114 TQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQS 173
+ R++G+ ++ TG A++ GL+N +P ++A + + Q+
Sbjct: 153 V-AVSRVIGRRAVTEMALTGATYDADWALAAGLINRILPEAALATHVADLAGALAARNQA 211
Query: 174 VFRI 177
R
Sbjct: 212 PLRR 215
|
| >2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} Length = 287 | Back alignment and structure |
|---|
Score = 159 bits (404), Expect = 5e-49
Identities = 45/179 (25%), Positives = 86/179 (48%), Gaps = 4/179 (2%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MSPSEIHFYVNTLRST-F 58
ML+ L+ ++ + V++I + VF +G DLK L + H V S
Sbjct: 61 MLKSLQSDILHDADSNDLKVIIISAE-GPVFSSGHDLKELTEEQGRDYHAEVFQTCSKVM 119
Query: 59 SFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLP 118
+ P+P IA+++G A G ++ +CD+ + + + P + + G L
Sbjct: 120 MHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLFCSTPGVA-LA 178
Query: 119 RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRI 177
R V + VA +++FTG +S ++A+ GL++ VP + Q + + IA++I + V +
Sbjct: 179 RAVPRKVALEMLFTGEPISAQEALLHGLLSKVVPEAELQEETMRIARKIASLSRPVVSL 237
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Length = 742 | Back alignment and structure |
|---|
Score = 165 bits (420), Expect = 3e-48
Identities = 60/170 (35%), Positives = 94/170 (55%), Gaps = 7/170 (4%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSF 60
++R +++ + D + ++I + FCAGAD+ + L S
Sbjct: 48 VIREVRNGLQKAGSDHTVKAIVICGA-NGNFCAGADIHGFSAFTPGLA-----LGSLVDE 101
Query: 61 LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRL 120
++ P +A I G ALGGGLE+AL C RI A +GLPE L I+PGA GTQ LPR+
Sbjct: 102 IQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILPGARGTQLLPRV 161
Query: 121 VGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
VG VA D+I +G+ +S +A+ LG+++ V + + +A++ AQ+I K
Sbjct: 162 VGVPVALDLITSGKYLSADEALRLGILDAVVKSDPVE-EAIKFAQKIIDK 210
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Length = 715 | Back alignment and structure |
|---|
Score = 165 bits (419), Expect = 3e-48
Identities = 63/171 (36%), Positives = 91/171 (53%), Gaps = 5/171 (2%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPS----EIHFYVNTLRS 56
L L+ A + I D+S V++ S VF GAD+ + E+
Sbjct: 36 TLNELRQAVDAIKADASVKGVIVSSG-KDVFIVGADITEFVENFKLPDAELIAGNLEANK 94
Query: 57 TFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQR 116
FS E L +PT+A I+G ALGGGLEM LA D R+ ++A +GLPE L I PG GGT R
Sbjct: 95 IFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVR 154
Query: 117 LPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 167
LPRL+G A + I +G++ +DA+ + V+ V A + AL++ +
Sbjct: 155 LPRLIGVDNAVEWIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRA 205
|
| >3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A Length = 334 | Back alignment and structure |
|---|
Score = 158 bits (401), Expect = 4e-48
Identities = 41/189 (21%), Positives = 71/189 (37%), Gaps = 19/189 (10%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKV------FCAGADLKVLQMSPSEIHFYVNT- 53
+ L + VV++ + P FC+G D ++ S +
Sbjct: 85 TVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQYASGDTAD 144
Query: 54 -----------LRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICG-EAALLGLP 101
+ + +P I +++G A GGG + + CDL + E A
Sbjct: 145 TVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQT 204
Query: 102 ETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKAL 161
+ + G G+ L R VG+ A++I F GR + + +G VN + + L
Sbjct: 205 DADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVAEHAELETVGL 264
Query: 162 EIAQEINQK 170
+ A EIN K
Sbjct: 265 QWAAEINAK 273
|
| >3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} Length = 286 | Back alignment and structure |
|---|
Score = 153 bits (390), Expect = 6e-47
Identities = 52/179 (29%), Positives = 80/179 (44%), Gaps = 4/179 (2%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MSPSEIHFYV-NTLRSTF 58
ML L AF T++ED S V++ +S K FCAG DLK ++ E + +
Sbjct: 54 MLAALGEAFGTLAEDESVRAVVLAAS-GKAFCAGHDLKEMRAEPSREYYEKLFARCTDVM 112
Query: 59 SFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLP 118
++ LP P IA + G A G ++ CDL + A + + + G L
Sbjct: 113 LAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATRDARFAVSGINVGLFCSTPGVA-LS 171
Query: 119 RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRI 177
R VG+ A +++ TG VS DA LGLVN V + + +I K ++ +
Sbjct: 172 RNVGRKAAFEMLVTGEFVSADDAKGLGLVNRVVAPKALDDEIEAMVSKIVAKPRAAVAM 230
|
| >2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 Length = 280 | Back alignment and structure |
|---|
Score = 152 bits (386), Expect = 2e-46
Identities = 33/172 (19%), Positives = 67/172 (38%), Gaps = 7/172 (4%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLK-VLQMSPSEIHFYVNTLRSTFS 59
M + A + S+D S ++ + + + +G DL + P +
Sbjct: 54 MYHEIMRALKAASKDDS--IITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLR 111
Query: 60 -FLEAL---PIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQ 115
F+ P P IAV++G A+G + + D + A P + L P +
Sbjct: 112 EFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSY 171
Query: 116 RLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 167
P+++ + A +++ G+K++ +A + GLV P Q + +
Sbjct: 172 TFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAF 223
|
| >3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} Length = 267 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 1e-44
Identities = 37/164 (22%), Positives = 64/164 (39%), Gaps = 6/164 (3%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ---MSPSEIHFYVNTLRST 57
++ E S+ VV++ P+VFC GAD + + + L
Sbjct: 35 LIEECLQVLNQC-ETSTVTVVVLEGL-PEVFCFGADFQEIYQEMKRGRKQASSQEPLYDL 92
Query: 58 FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRL 117
+ L+ P TI+ + G GGL A D+ I + A L E + P A L
Sbjct: 93 WMKLQTGPYVTISHVRGKVNAGGLGFVSATDIAIADQTASFSLSELLFGLYP-ACVLPFL 151
Query: 118 PRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKAL 161
R +G+ A + + +S ++A GL++ + L+
Sbjct: 152 IRRIGRQKAHYMTLMTKPISVQEASEWGLIDAFDAESDVLLRKH 195
|
| >3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A Length = 333 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 2e-42
Identities = 40/198 (20%), Positives = 64/198 (32%), Gaps = 35/198 (17%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ------------------- 41
L E D +V+++ + FCAG DL
Sbjct: 63 TPLELSALVERADLDPDVHVILVSGR-GEGFCAGFDLSAYAEGSSSAGGGSPYEGTVLSG 121
Query: 42 ------------MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDL 89
P + ++ F+ L PT+ I G + GG ++AL D
Sbjct: 122 KTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPTVVKIHGYCVAGGTDIALHADQ 181
Query: 90 RICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNY 149
I A +G P + +P AG +G AK ++FTG ++G A GL
Sbjct: 182 VIAAADAKIGYPPMRVWGVPAAG---LWAHRLGDQRAKRLLFTGDCITGAQAAEWGLAVE 238
Query: 150 YVPAGQAQLKALEIAQEI 167
+ + + I
Sbjct: 239 APDPADLDARTERLVERI 256
|
| >1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A Length = 280 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 2e-42
Identities = 32/188 (17%), Positives = 64/188 (34%), Gaps = 16/188 (8%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSE---------IHFYV 51
L E + +I+SS + F +GAD K + + + +
Sbjct: 37 DYIYLGELLELADRNRDVYFTIIQSS-GRFFSSGADFKGIAKAQGDDTNKYPSETSKWVS 95
Query: 52 NTLRSTFSFLEAL---PIPTIAVIDGAALGGGLEMALACDLRICG-EAALLGLPETGLAI 107
N + +A I ++G A+G + CD+ + L P L +
Sbjct: 96 NFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGL 155
Query: 108 IPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKAL--EIAQ 165
I G T LP G + + + + G ++ + +A ++ +
Sbjct: 156 ITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLE 215
Query: 166 EINQKVQS 173
E+ +KV+
Sbjct: 216 ELREKVKG 223
|
| >3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} Length = 267 | Back alignment and structure |
|---|
Score = 136 bits (346), Expect = 1e-40
Identities = 42/176 (23%), Positives = 68/176 (38%), Gaps = 10/176 (5%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ--MSPSEIHFYVNTLRSTF 58
++ L S D + VV++ + FCAGADL SPS +
Sbjct: 39 LVSQLHQGLRDASSDPAVRVVVLAHTG-GTFCAGADLSEAGSGGSPSSAYDMAVERAREM 97
Query: 59 SFL----EALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGT 114
+ L +P IA IDG GG + ACD+ + G + L E + + P
Sbjct: 98 AALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPRSSFALTEARIGVAPAIISL 157
Query: 115 QRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
LP+L + A TG K + A +GL+ + A ++ ++ +
Sbjct: 158 TLLPKLSAR-AAARYYLTGEKFDARRAEEIGLIT--MAAEDLDAAIDQLVTDVGRG 210
|
| >3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens} Length = 363 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 4e-27
Identities = 43/166 (25%), Positives = 82/166 (49%), Gaps = 7/166 (4%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFS 59
M+R + + +D +++I+ + K FCAG D++V+ + ++ R +
Sbjct: 34 MIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQKIAPVFFREEYM 93
Query: 60 F---LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQR 116
+ + P +A+I G +GGG+ +++ R+ E L +PET + + P GG
Sbjct: 94 LNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYF 153
Query: 117 LPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALE 162
LPRL GK + + TG ++ G+D G+ ++V + +L LE
Sbjct: 154 LPRLQGK-LGYFLALTGFRLKGRDVYRAGIATHFVDS--EKLAMLE 196
|
| >3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis} Length = 407 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 4e-27
Identities = 38/170 (22%), Positives = 69/170 (40%), Gaps = 11/170 (6%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTF-- 58
M+R + +D V++ S K FCAG D++ L + V + F
Sbjct: 70 MVRAMTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHASVAAKGQVTEVAKVFFE 129
Query: 59 ------SFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAG 112
L P + DG +GGGL + ++ E + + +PE + + P G
Sbjct: 130 EEYRLDYLLHTYGKPVLVWGDGIVMGGGLGLMAGASHKVVTETSRIAMPEVTIGLYPDVG 189
Query: 113 GTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALE 162
G+ L R+ GK + + T ++ DA +GL ++Y+ + +
Sbjct: 190 GSYFLNRMPGK-MGLFLGLTAYHMNAADACYVGLADHYLNR--DDKELMF 236
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 179 | |||
| 3hrx_A | 254 | Probable enoyl-COA hydratase; the spiral fold, the | 100.0 | |
| 4fzw_C | 274 | 1,2-epoxyphenylacetyl-COA isomerase; structural ge | 100.0 | |
| 3kqf_A | 265 | Enoyl-COA hydratase/isomerase family protein; IDP0 | 100.0 | |
| 3pea_A | 261 | Enoyl-COA hydratase/isomerase family protein; stru | 100.0 | |
| 3gow_A | 254 | PAAG, probable enoyl-COA hydratase; the spiral fol | 100.0 | |
| 4fzw_A | 258 | 2,3-dehydroadipyl-COA hydratase; structural genomi | 100.0 | |
| 4di1_A | 277 | Enoyl-COA hydratase ECHA17; structural genomics, s | 100.0 | |
| 3i47_A | 268 | Enoyl COA hydratase/isomerase (crotonase); structu | 100.0 | |
| 3qk8_A | 272 | Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB | 100.0 | |
| 3g64_A | 279 | Putative enoyl-COA hydratase; alpha-beta structure | 100.0 | |
| 3r6h_A | 233 | Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m | 100.0 | |
| 3hin_A | 275 | Putative 3-hydroxybutyryl-COA dehydratase; structu | 100.0 | |
| 3lke_A | 263 | Enoyl-COA hydratase; nysgrc, target 112 structural | 100.0 | |
| 1sg4_A | 260 | 3,2-trans-enoyl-COA isomerase, mitochondrial; crot | 100.0 | |
| 3sll_A | 290 | Probable enoyl-COA hydratase/isomerase; structural | 100.0 | |
| 2ppy_A | 265 | Enoyl-COA hydratase; beta-oxidation, fatty acid me | 100.0 | |
| 1nzy_A | 269 | Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen | 100.0 | |
| 3p5m_A | 255 | Enoyl-COA hydratase/isomerase; seattle structural | 100.0 | |
| 2ej5_A | 257 | Enoyl-COA hydratase subunit II; structural genomic | 100.0 | |
| 3gkb_A | 287 | Putative enoyl-COA hydratase; structural genomics, | 100.0 | |
| 3l3s_A | 263 | Enoyl-COA hydratase/isomerase family protein; crot | 100.0 | |
| 3rrv_A | 276 | Enoyl-COA hydratase/isomerase; structural genomics | 100.0 | |
| 2a7k_A | 250 | CARB; crotonase, antibiotic, beta-lactam, biosynth | 100.0 | |
| 3qmj_A | 256 | Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, | 100.0 | |
| 3moy_A | 263 | Probable enoyl-COA hydratase; ssgcid, seattle stru | 100.0 | |
| 2vx2_A | 287 | Enoyl-COA hydratase domain-containing protein 3; i | 100.0 | |
| 1wz8_A | 264 | Enoyl-COA hydratase; lyase, crotonase, hexamer, st | 100.0 | |
| 2pbp_A | 258 | Enoyl-COA hydratase subunit I; B-oxidation, struct | 100.0 | |
| 3myb_A | 286 | Enoyl-COA hydratase; ssgcid, struct genomics, seat | 100.0 | |
| 3ot6_A | 232 | Enoyl-COA hydratase/isomerase family protein; stru | 100.0 | |
| 3fdu_A | 266 | Putative enoyl-COA hydratase/isomerase; structural | 100.0 | |
| 3lao_A | 258 | Enoyl-COA hydratase/isomerase; alpha-beta sandwich | 100.0 | |
| 2f6q_A | 280 | Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis | 100.0 | |
| 3h81_A | 278 | Enoyl-COA hydratase ECHA8; niaid, decode, infectio | 100.0 | |
| 1dci_A | 275 | Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg | 100.0 | |
| 4eml_A | 275 | Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe | 100.0 | |
| 3t89_A | 289 | 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase | 100.0 | |
| 2j5i_A | 276 | P-hydroxycinnamoyl COA hydratase/lyase; vanillin, | 100.0 | |
| 1uiy_A | 253 | Enoyl-COA hydratase; lyase, beta-oxidation, croton | 100.0 | |
| 3qre_A | 298 | Enoyl-COA hydratase, ECHA12_1; structural genomics | 100.0 | |
| 1hzd_A | 272 | AUH, AU-binding protein/enoyl-COA hydratase; RNA-b | 100.0 | |
| 1szo_A | 257 | 6-oxocamphor hydrolase; enzyme-product complex; HE | 100.0 | |
| 3h0u_A | 289 | Putative enoyl-COA hydratase; structural genomics, | 100.0 | |
| 2gtr_A | 261 | CDY-like, chromodomain Y-like protein; structural | 100.0 | |
| 3t8b_A | 334 | 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase | 100.0 | |
| 3r9q_A | 262 | Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome | 100.0 | |
| 2fbm_A | 291 | Y chromosome chromodomain protein 1, telomeric IS; | 100.0 | |
| 3pe8_A | 256 | Enoyl-COA hydratase; emerald biostructures, struct | 100.0 | |
| 3rsi_A | 265 | Putative enoyl-COA hydratase/isomerase; structural | 100.0 | |
| 1ef8_A | 261 | Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc | 100.0 | |
| 4f47_A | 278 | Enoyl-COA hydratase ECHA19; ssgcid, seattle struct | 100.0 | |
| 2j5g_A | 263 | ALR4455 protein; enzyme evolution, C-C bond hydrol | 100.0 | |
| 3swx_A | 265 | Probable enoyl-COA hydratase/isomerase; structural | 100.0 | |
| 3oc7_A | 267 | Enoyl-COA hydratase; seattle structural genomics c | 100.0 | |
| 1mj3_A | 260 | Enoyl-COA hydratase, mitochondrial; homohexamer, l | 100.0 | |
| 3qxz_A | 265 | Enoyl-COA hydratase/isomerase; structural genomics | 100.0 | |
| 4hdt_A | 353 | 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti | 100.0 | |
| 3tlf_A | 274 | Enoyl-COA hydratase/isomerase; structural genomics | 100.0 | |
| 2uzf_A | 273 | Naphthoate synthase; lyase, menaquinone biosynthes | 100.0 | |
| 3isa_A | 254 | Putative enoyl-COA hydratase/isomerase; structural | 100.0 | |
| 3m6n_A | 305 | RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X | 100.0 | |
| 1pjh_A | 280 | Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral | 100.0 | |
| 3r9t_A | 267 | ECHA1_1; ssgcid, seattle structural genomics cente | 100.0 | |
| 2q35_A | 243 | CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} | 100.0 | |
| 3njd_A | 333 | Enoyl-COA hydratase; ssgcid, mycobacerium smegmati | 100.0 | |
| 3t3w_A | 279 | Enoyl-COA hydratase; ssgcid, structural genomics, | 100.0 | |
| 3qxi_A | 265 | Enoyl-COA hydratase ECHA1; structural genomics, se | 100.0 | |
| 3hp0_A | 267 | Putative polyketide biosynthesis enoyl-COA hydrata | 100.0 | |
| 3trr_A | 256 | Probable enoyl-COA hydratase/isomerase; ssgcid, st | 100.0 | |
| 3he2_A | 264 | Enoyl-COA hydratase ECHA6; fatty acid metabolism, | 100.0 | |
| 3bpt_A | 363 | 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet | 100.0 | |
| 3ju1_A | 407 | Enoyl-COA hydratase/isomerase family protein; alph | 100.0 | |
| 2w3p_A | 556 | Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri | 100.0 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 100.0 | |
| 2np9_A | 440 | DPGC; protein inhibitor complex, oxidoreductase; H | 100.0 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 100.0 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 100.0 | |
| 3rst_A | 240 | Signal peptide peptidase SPPA; alpha/beta protein | 99.89 | |
| 3bf0_A | 593 | Protease 4; bacterial, hydrolase, inner membrane, | 99.88 | |
| 3viv_A | 230 | 441AA long hypothetical NFED protein; protein-pept | 99.85 | |
| 1y7o_A | 218 | ATP-dependent CLP protease proteolytic subunit; hy | 99.75 | |
| 2f9y_B | 304 | Acetyl-coenzyme A carboxylase carboxyl transferas | 99.68 | |
| 2f9y_A | 339 | Acetyl-COA carboxylase, carboxyltransferase alpha; | 99.64 | |
| 2f9i_A | 327 | Acetyl-coenzyme A carboxylase carboxyl transferase | 99.64 | |
| 2cby_A | 208 | ATP-dependent CLP protease proteolytic subunit 1; | 99.48 | |
| 1yg6_A | 193 | ATP-dependent CLP protease proteolytic subunit; en | 99.26 | |
| 3qwd_A | 203 | ATP-dependent CLP protease proteolytic subunit; ca | 99.24 | |
| 2f6i_A | 215 | ATP-dependent CLP protease, putative; structural g | 99.23 | |
| 2w3p_A | 556 | Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri | 99.15 | |
| 1tg6_A | 277 | Putative ATP-dependent CLP protease proteolytic S; | 99.15 | |
| 3p2l_A | 201 | ATP-dependent CLP protease proteolytic subunit; st | 99.12 | |
| 3bf0_A | 593 | Protease 4; bacterial, hydrolase, inner membrane, | 99.01 | |
| 4gm2_A | 205 | ATP-dependent CLP protease proteolytic subunit; st | 98.79 | |
| 1pix_A | 587 | Glutaconyl-COA decarboxylase A subunit; biotin-dep | 98.35 | |
| 2f9i_B | 285 | Acetyl-coenzyme A carboxylase carboxyl transferase | 98.33 | |
| 3iav_A | 530 | Propionyl-COA carboxylase complex B subunit; accas | 98.26 | |
| 3n6r_B | 531 | Propionyl-COA carboxylase, beta subunit; protein c | 98.16 | |
| 1on3_A | 523 | Methylmalonyl-COA carboxyltransferase 12S subunit; | 98.15 | |
| 1x0u_A | 522 | Hypothetical methylmalonyl-COA decarboxylase ALPH; | 98.07 | |
| 2bzr_A | 548 | Propionyl-COA carboxylase beta chain 5; fatty acid | 98.03 | |
| 1x0u_A | 522 | Hypothetical methylmalonyl-COA decarboxylase ALPH; | 98.02 | |
| 1vrg_A | 527 | Propionyl-COA carboxylase, beta subunit; TM0716, s | 98.01 | |
| 1pix_A | 587 | Glutaconyl-COA decarboxylase A subunit; biotin-dep | 97.89 | |
| 1on3_A | 523 | Methylmalonyl-COA carboxyltransferase 12S subunit; | 97.86 | |
| 2bzr_A | 548 | Propionyl-COA carboxylase beta chain 5; fatty acid | 97.78 | |
| 3u9r_B | 555 | MCC beta, methylcrotonyl-COA carboxylase, beta-sub | 97.76 | |
| 1vrg_A | 527 | Propionyl-COA carboxylase, beta subunit; TM0716, s | 97.74 | |
| 3n6r_B | 531 | Propionyl-COA carboxylase, beta subunit; protein c | 97.52 | |
| 3iav_A | 530 | Propionyl-COA carboxylase complex B subunit; accas | 97.47 | |
| 3u9r_B | 555 | MCC beta, methylcrotonyl-COA carboxylase, beta-sub | 97.41 | |
| 3gf3_A | 588 | Glutaconyl-COA decarboxylase subunit A; sodium ION | 97.33 | |
| 3gf3_A | 588 | Glutaconyl-COA decarboxylase subunit A; sodium ION | 97.28 | |
| 3k8x_A | 758 | Acetyl-COA carboxylase; transferase, carboxyltrans | 97.18 | |
| 2x24_A | 793 | Acetyl-COA carboxylase; fatty acid biosynthesis, l | 96.79 | |
| 2x24_A | 793 | Acetyl-COA carboxylase; fatty acid biosynthesis, l | 95.81 | |
| 3k8x_A | 758 | Acetyl-COA carboxylase; transferase, carboxyltrans | 93.91 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 88.75 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 88.22 | |
| 3mwd_B | 334 | ATP-citrate synthase; ATP-grAsp, phosphohistidine, | 87.06 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 86.36 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 85.42 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 82.54 | |
| 3dmy_A | 480 | Protein FDRA; predicted actyl-COA synthetase, nysg | 82.29 | |
| 3pff_A | 829 | ATP-citrate synthase; phosphohistidine, organic ac | 81.95 | |
| 2csu_A | 457 | 457AA long hypothetical protein; structural genomi | 80.12 |
| >3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-49 Score=305.55 Aligned_cols=178 Identities=26% Similarity=0.433 Sum_probs=168.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchh
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G 80 (179)
|+.+|.+++++++.|+++|+|||||. ++.||+|.|+.++.........+.+.++.++..+.++||||||+|||+|+|||
T Consensus 28 m~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG 106 (254)
T 3hrx_A 28 LLDALYAALKEGEEDREVRALLLTGA-GRAFSAGQDLTEFGDRKPDYEAHLRRYNRVVEALSGLEKPLVVAVNGVAAGAG 106 (254)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEES-TTCSBCCBCGGGTTTSCCCHHHHTHHHHHHHHHHHTCSSCEEEEECSEEETHH
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEeCC-CCCcccCccHHHhcccchhhHHHHHHHHHHHHHHHhCCCCEEEEECCEeeehh
Confidence 68899999999999999999999999 89999999999984444455566677888999999999999999999999999
Q ss_pred HHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHHH
Q 030339 81 LEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKA 160 (179)
Q Consensus 81 ~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~a 160 (179)
++|+++||+||++++++|++||+++|++|++|++++|++++|.+++++++++|++++|+||+++||||+|+|++++.+++
T Consensus 107 ~~lalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a 186 (254)
T 3hrx_A 107 MSLALWGDLRLAAVGASFTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELLLLSPRLSAEEALALGLVHRVVPAEKLMEEA 186 (254)
T ss_dssp HHHHTTCSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHH
T ss_pred hhhhhccceeeEcCCCEEEchhhCcCcCCcccHHHHHHHHhCcchHHHHhhcCcccCHHHHHHCCCeEEecCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCHHHHHhhC
Q 030339 161 LEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 161 ~~~a~~~~~~~~~a~~~~K 179 (179)
.+++++++++||.+++.+|
T Consensus 187 ~~~a~~la~~~~~a~~~~K 205 (254)
T 3hrx_A 187 LSLAKELAQGPTRAYALTK 205 (254)
T ss_dssp HHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHhhccchHHHHHHH
Confidence 9999999999999998876
|
| >4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-48 Score=303.17 Aligned_cols=178 Identities=24% Similarity=0.380 Sum_probs=164.1
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccc-----cCchhHHHHHHHHHHHHHHHhcCCCcEEEEEccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-----MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGA 75 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~ 75 (179)
|+.+|.+++++++.|+++|+|||||. |+.||+|.|+.++. ...+....+.+.++.++..+.++||||||+|||+
T Consensus 43 m~~~L~~al~~~~~d~~vr~vVltg~-G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~ 121 (274)
T 4fzw_C 43 MHAQLAECLKQVERDDTIRCLLLTGA-GRGFCAGQDLNDRNVDPTGPAPDLGMSVERFYNPLVRRLAKLPKPVICAVNGV 121 (274)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEES-SSCSBCCBCCC---------CCCHHHHHHHTHHHHHHHHHHCSSCEEEEECSC
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCceeCCcChHhhhccccccchHHHHHHHHHHHHHHHHHHHCCCCEEEEECCc
Confidence 67899999999999999999999999 79999999999871 1223345555667788999999999999999999
Q ss_pred ccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCCh
Q 030339 76 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 155 (179)
Q Consensus 76 a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~ 155 (179)
|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+|+|+++
T Consensus 122 a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~llltg~~i~A~eA~~~GLv~~vv~~~~ 201 (274)
T 4fzw_C 122 AAGAGATLALGGDIVIAARSAKFVMAFSKLGLIPDCGGTWLLPRVAGRARAMGLALLGNQLSAEQAHEWGMIWQVVDDET 201 (274)
T ss_dssp EETHHHHHHHTSSEEEEETTCEEECCGGGTTCCCTTTHHHHHHHHTCHHHHHHHHHHCCCEEHHHHHHTTSSSEEECGGG
T ss_pred eeecCceeeeccceEEECCCCEEECcccCcccCCCccHHHHHHHHhhHHHHHHHHHhCCcCCHHHHHHCCCceEEeChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCHHHHHhhC
Q 030339 156 AQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 156 ~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+.+++.+++++++++||.+++.+|
T Consensus 202 l~~~a~~~a~~la~~~~~a~~~~K 225 (274)
T 4fzw_C 202 LADTAQQLARHLATQPTFGLGLIK 225 (274)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999876
|
| >3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-47 Score=299.96 Aligned_cols=179 Identities=46% Similarity=0.773 Sum_probs=169.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+.+|.+++++++.|+++|+|||||.|++.||+|.|++++ ..+......+...++.++.++.++|||+||+|||+|+||
T Consensus 37 ~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg 116 (265)
T 3kqf_A 37 LLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSMIRTTMEMVEQLPQPVIAAINGIALGG 116 (265)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETH
T ss_pred HHHHHHHHHHHHhcCCCceEEEEecCCCCeeeeCcChHHHhccCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehH
Confidence 5789999999999999999999999955999999999988 444555666677788899999999999999999999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
|++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+|+|++++.++
T Consensus 117 G~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~ 196 (265)
T 3kqf_A 117 GTELSLACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEYGLVEFVVPVHLLEEK 196 (265)
T ss_dssp HHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHH
T ss_pred HHHHHHhCCEEEEcCCcEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEEeCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030339 160 ALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 160 a~~~a~~~~~~~~~a~~~~K 179 (179)
+.+++++++++||.+++.+|
T Consensus 197 a~~~a~~la~~~p~a~~~~K 216 (265)
T 3kqf_A 197 AIEIAEKIASNGPIAVRLAK 216 (265)
T ss_dssp HHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999887
|
| >3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-47 Score=296.56 Aligned_cols=178 Identities=36% Similarity=0.593 Sum_probs=165.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCc-hhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSP-SEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 78 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g 78 (179)
|+.+|.+++++++.|+++|+|||||. |+.||+|.|++++ .... .....+.+..+.++.++.++|||+||+|||+|+|
T Consensus 33 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 111 (261)
T 3pea_A 33 VMHDVTELIDQVEKDDNIRVVVIHGE-GRFFSAGADIKEFTSVTEAKQATELAQLGQVTFERVEKCSKPVIAAIHGAALG 111 (261)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEES-TTCSBCCBCGGGSSTTCCHHHHHHHHHHHHHHHHHHHTCSSCEEEEECSEEET
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCceeCCcCHHHHhhcCchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeh
Confidence 57899999999999999999999999 6999999999998 3222 3344455556678899999999999999999999
Q ss_pred hhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHH
Q 030339 79 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 158 (179)
Q Consensus 79 ~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~ 158 (179)
||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+|++++++.+
T Consensus 112 gG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~ 191 (261)
T 3pea_A 112 GGLEFAMSCHMRFATESAKLGLPELTLGLIPGFAGTQRLPRYVGKAKACEMMLTSTPITGAEALKWGLVNGVFAEETFLD 191 (261)
T ss_dssp HHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHHH
T ss_pred HHHHHHHhCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEecCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030339 159 KALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 159 ~a~~~a~~~~~~~~~a~~~~K 179 (179)
++.++++++++.||.+++.+|
T Consensus 192 ~a~~~a~~la~~~~~a~~~~K 212 (261)
T 3pea_A 192 DTLKVAKQIAGKSPATARAVL 212 (261)
T ss_dssp HHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999876
|
| >4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-47 Score=297.80 Aligned_cols=177 Identities=35% Similarity=0.556 Sum_probs=163.5
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchh
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G 80 (179)
|+.+|.+++++++.|+++++|||||. |+.||+|.|++++... .....+.+....++.++.++|||+||+|||+|+|||
T Consensus 33 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~-~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG 110 (258)
T 4fzw_A 33 LLMQLVNELEAAATDTSISVCVITGN-ARFFAAGADLNEMAEK-DLAATLNDTRPQLWARLQAFNKPLIAAVNGYALGAG 110 (258)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEEEECC-SSEEEECBCHHHHHTC-CHHHHHTCSHHHHHHHHHTCCSCEEEEECSEEETHH
T ss_pred HHHHHHHHHHHHhhCCCeEEEEEeCC-CCceeCCCchhhhccc-hhhhHHHhHHHHHHHHHHHCCCCEEEEEcCcceeee
Confidence 67899999999999999999999998 8999999999987221 122233344567888999999999999999999999
Q ss_pred HHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHHH
Q 030339 81 LEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKA 160 (179)
Q Consensus 81 ~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~a 160 (179)
++|+++||+||++++++|++||+++|++|+.++++++++++|..++++++++|++++++||+++||||+|+|++++.+++
T Consensus 111 ~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~llltg~~i~a~eA~~~GLv~~vv~~~~l~~~a 190 (258)
T 4fzw_A 111 CELALLCDVVVAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASKMVLSGESITAQQAQQAGLVSDVFPSDLTLEYA 190 (258)
T ss_dssp HHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECTTTHHHHH
T ss_pred eEeecccceEEECCCCEEECcccCCCcCCCchHHHHHHHHhCHHHHHHHHHcCCcCcHHHHHHCCCeeEEeCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCHHHHHhhC
Q 030339 161 LEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 161 ~~~a~~~~~~~~~a~~~~K 179 (179)
.+++++++++||.+++.+|
T Consensus 191 ~~~a~~la~~~p~a~~~~K 209 (258)
T 4fzw_A 191 LQLASKMARHSPLALQAAK 209 (258)
T ss_dssp HHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999886
|
| >4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-47 Score=299.03 Aligned_cols=178 Identities=29% Similarity=0.479 Sum_probs=168.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+.+|.++|++++.|+++|+|||||. ++.||+|.|+.++ .........+...++.++.++.++|||+||+|||+|+|+
T Consensus 51 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg 129 (277)
T 4di1_A 51 VYREIVAAADELGRRDDIGAVVLFGG-HEIFSAGDDMPELRTLNAPEADTAARVRLEAIDAVAAIPKPTVAAVTGYALGA 129 (277)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEECC-SSCSBCCBCHHHHHTCCHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETH
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEECC-CCCEecCcCcccccccChHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeEehh
Confidence 57899999999999999999999999 8999999999998 444455566677788899999999999999999999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
|++|+++||+||++++++|++||+++|++|+++++++|++++|..++++++++|++++|+||+++||||+|++++++.++
T Consensus 130 G~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~ 209 (277)
T 4di1_A 130 GLTLALAADWRVSGDNVKFGATEILAGLIPGGGGMGRLTRVVGSSRAKELVFSGRFFDAEEALALGLIDDMVAPDDVYDS 209 (277)
T ss_dssp HHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHH
T ss_pred HHHHHHhCCEEEEcCCCEEECcccccCCCCCchHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEEeChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030339 160 ALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 160 a~~~a~~~~~~~~~a~~~~K 179 (179)
+.++++++++.||.+++.+|
T Consensus 210 a~~~a~~la~~~~~a~~~~K 229 (277)
T 4di1_A 210 AVAWARRYLECPPRALAAAK 229 (277)
T ss_dssp HHHHHHTTTTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999887
|
| >3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-46 Score=295.14 Aligned_cols=177 Identities=27% Similarity=0.405 Sum_probs=163.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-c---cCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-Q---MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 76 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a 76 (179)
|+.+|.+++++++.|+++|+|||||. |+.||+|.|++++ . ............+..++.++.++||||||+|||+|
T Consensus 32 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a 110 (268)
T 3i47_A 32 LLTEMRIRLDSAINDTNVRVIVLKAN-GKHFSAGADLTWMQSMANFTEEENLEDSLVLGNLMYSISQSPKPTIAMVQGAA 110 (268)
T ss_dssp HHHHHHHHHHHHHHCTTCSEEEEEEC-SSCSBCSBCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEE
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEECC-CCCeeCCCChhhhhccccccHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEE
Confidence 67899999999999999999999999 6999999999987 2 22233334556677889999999999999999999
Q ss_pred cchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChH
Q 030339 77 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 156 (179)
Q Consensus 77 ~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~ 156 (179)
+|||++|+++||+||++++++|++||+++|++|+++++ ++++++|..++++++++|++++|+||+++||||+|+|++++
T Consensus 111 ~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~~l 189 (268)
T 3i47_A 111 FGGGAGLAAACDIAIASTSARFCFSEVKLGLIPAVISP-YVVRAIGERAAKMLFMSAEVFDATRAYSLNLVQHCVPDDTL 189 (268)
T ss_dssp ETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCTTTHH-HHHHHHCHHHHHHHHHHCCEEEHHHHHHTTSCSEEECGGGH
T ss_pred EhHhHHHHHhCCEEEEcCCCEEECcccccCCCcccHHH-HHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCcEeeChhHH
Confidence 99999999999999999999999999999999999887 78899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCHHHHHhhC
Q 030339 157 QLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 157 ~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
.+++.+++++++++||.+++.+|
T Consensus 190 ~~~a~~~a~~la~~~~~a~~~~K 212 (268)
T 3i47_A 190 LEFTLKYASQISNNAPEAVKNSK 212 (268)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999887
|
| >3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-47 Score=297.64 Aligned_cols=178 Identities=26% Similarity=0.368 Sum_probs=166.2
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-c--cCchhHHHHHHHHHHHHHHHhcCCCcEEEEEccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-Q--MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 77 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~ 77 (179)
|+.+|.++++.++.|+++|+|||||. ++.||+|.|+.++ . ........+.+.+++++.++.++||||||+|||+|+
T Consensus 41 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~ 119 (272)
T 3qk8_A 41 MHRDLADVWPVIDRDPDVRVVLVRGE-GKAFSSGGSFELIDETIGDYEGRIRIMREARDLVLNLVNLDKPVVSAIRGPAV 119 (272)
T ss_dssp HHHHHHHHHHHHHHCTTCSEEEEEES-SSCSBCEECHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTCCSCEEEEECSEEE
T ss_pred HHHHHHHHHHHHhhCCCceEEEEECC-CCCeeCCcCHHHHhccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeee
Confidence 57899999999999999999999999 6999999999988 2 122333455667778999999999999999999999
Q ss_pred chhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHH
Q 030339 78 GGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 157 (179)
Q Consensus 78 g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~ 157 (179)
|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+|++++++.
T Consensus 120 GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~ 199 (272)
T 3qk8_A 120 GAGLVVALLADISVASATAKIIDGHTKLGVAAGDHAAICWPLLVGMAKAKYYLLTCETLSGEEAERIGLVSTCVDDDEVL 199 (272)
T ss_dssp HHHHHHHHHSSEEEEETTCEEECCHHHHTSCSCSSHHHHTHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHH
T ss_pred hHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCCcEeeCHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCHHHHHhhC
Q 030339 158 LKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 158 ~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+++.+++++++++||.+++.+|
T Consensus 200 ~~a~~~a~~la~~~~~a~~~~K 221 (272)
T 3qk8_A 200 PTATRLAENLAQGAQNAIRWTK 221 (272)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999887
|
| >3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-46 Score=295.09 Aligned_cols=178 Identities=20% Similarity=0.363 Sum_probs=165.5
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-c--c--CchhHHHHHHHHHHHHHHHhcCCCcEEEEEccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-Q--M--SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGA 75 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~--~--~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~ 75 (179)
|+.+|.+++++++.|+++|+|||||. ++.||+|.|++++ . . .......+.+.++.++.++.++||||||+|||+
T Consensus 45 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 123 (279)
T 3g64_A 45 AYADLRDLLAELSRRRAVRALVLAGE-GRGFCSGGDVDEIIGATLSMDTARLLDFNRMTGQVVRAVRECPFPVIAALHGV 123 (279)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEEEEEC-SSCSBCCBCTTTTHHHHTTCCHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSE
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCceecCcCHHHHhhccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEEcCe
Confidence 67899999999999999999999999 6999999999988 1 1 112333555667889999999999999999999
Q ss_pred ccchhHHHHhhcCEEEEcCCceeeccccccccc-CCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCC
Q 030339 76 ALGGGLEMALACDLRICGEAALLGLPETGLAII-PGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG 154 (179)
Q Consensus 76 a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~-p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~ 154 (179)
|+|||++|+++||+||++++++|++||+++|++ |++|++++|++++|..++++++++|++++|+||+++||||+|+|++
T Consensus 124 a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~ 203 (279)
T 3g64_A 124 AAGAGAVLALAADFRVADPSTRFAFLFTRVGLSGGDMGAAYLLPRVVGLGHATRLLMLGDTVRAPEAERIGLISELTEEG 203 (279)
T ss_dssp EETHHHHHHHHSSEEEECTTCEEECCGGGGTCCSCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTCCSEECCTT
T ss_pred eccccHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchhHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCCCEecCch
Confidence 999999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhccCHHHHHhhC
Q 030339 155 QAQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 155 ~~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
++.+++.++++++++.||.+++.+|
T Consensus 204 ~l~~~a~~~a~~la~~~~~a~~~~K 228 (279)
T 3g64_A 204 RADEAARTLARRLADGPALAHAQTK 228 (279)
T ss_dssp CHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999999999887
|
| >3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-47 Score=290.42 Aligned_cols=177 Identities=19% Similarity=0.176 Sum_probs=164.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+.+|.++++++++| ++|+|||||. |+.||+|.|++++ ..+......+.+..++++.++.++|||+||+|||+|+|+
T Consensus 32 ~~~~L~~al~~~~~d-~vr~vvltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg 109 (233)
T 3r6h_A 32 MQQALNEAIDAADRD-NVGALVIAGN-HRVFSGGFDLKVLTSGEAKPAIDMLRGGFELSYRLLSYPKPVVIACTGHAIAM 109 (233)
T ss_dssp HHHHHHHHHHHHHHH-TCSEEEEECC-SSEEECCSCHHHHC---CHHHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETH
T ss_pred HHHHHHHHHHHHHhC-CCeEEEEECC-CCCccCCcChHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEECCcchHH
Confidence 578999999999987 6899999998 7999999999998 333455566777788899999999999999999999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
|++|+++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++|+||+++||||+|+|++++.++
T Consensus 110 G~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~~g~~~l~~~~g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~ 189 (233)
T 3r6h_A 110 GAFLLCSGDHRVAAHAYNVQANEVAIGMTIPYAAMEVLKLRLTPSAYQQAAGLAKTFFGETALAAGFIDEISLPEVVLSR 189 (233)
T ss_dssp HHHHHTTSSEEEECTTCCEECCGGGGTCCCCHHHHHHHHHHSCHHHHHHHHHSCCEECHHHHHHHTSCSEECCGGGHHHH
T ss_pred HHHHHHhCCEEEEeCCcEEECchhhhCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCCcEeeCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030339 160 ALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 160 a~~~a~~~~~~~~~a~~~~K 179 (179)
+.++++++++.||.+++.+|
T Consensus 190 a~~~a~~la~~~~~a~~~~K 209 (233)
T 3r6h_A 190 AEEAAREFAGLNQQAHNATK 209 (233)
T ss_dssp HHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999887
|
| >3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-46 Score=295.90 Aligned_cols=176 Identities=32% Similarity=0.514 Sum_probs=164.2
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+.+|.++++++ |+++|+|||||. |+.||+|.|++++ .............++.++.++.++||||||+|||+|+||
T Consensus 44 ~~~~L~~al~~~--d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg 120 (275)
T 3hin_A 44 LMAALKDCLTDI--PDQIRAVVIHGI-GDHFSAGLDLSELRERDATEGLVHSQTWHRVFDKIQYCRVPVIAALKGAVIGG 120 (275)
T ss_dssp HHHHHHHHTSSC--CTTCCEEEEEES-SSCSBCCBCGGGCCCCCHHHHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETH
T ss_pred HHHHHHHHHHHh--CcCceEEEEECC-CCCccCCCCHHHHhccChhhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehH
Confidence 578999999998 689999999999 6899999999998 334444455666778889999999999999999999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
|++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+|+|++++.++
T Consensus 121 G~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~ 200 (275)
T 3hin_A 121 GLELACAAHIRVAEASAYYALPEGSRGIFVGGGGSVRLPRLIGVARMADMMLTGRVYSAAEGVVHGFSQYLIENGSAYDK 200 (275)
T ss_dssp HHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEESSSCHHHH
T ss_pred HHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCCCEEeChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030339 160 ALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 160 a~~~a~~~~~~~~~a~~~~K 179 (179)
+.++++++++++|.+++.+|
T Consensus 201 a~~~a~~ia~~~p~a~~~~K 220 (275)
T 3hin_A 201 ALELGNRVAQNAPLTNFAVL 220 (275)
T ss_dssp HHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999876
|
| >3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-47 Score=295.90 Aligned_cols=178 Identities=22% Similarity=0.346 Sum_probs=167.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCcc-ccccCcccc-c----cCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVF-CAGADLKVL-Q----MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDG 74 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F-~~G~D~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G 74 (179)
|+.+|.+++++++.|+++|+|||||. |+.| |+|.|+.++ . ........+.+.+++++.++.++|||+||+|||
T Consensus 32 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~FF~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 110 (263)
T 3lke_A 32 LGTSLLEAIRAGNNETSIHSIILQSK-HRAYFSSGPRLEDLLICASDQSDVRLREVLHVLNHCVLEIFTSPKVTVALING 110 (263)
T ss_dssp HHHHHHHHHHHHHHCSSCCEEEEEES-CTTEEECBSCHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHTCSSEEEEEECS
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEEcC-CCceEecCcCHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 57899999999999999999999999 6788 999999988 3 244555667777888999999999999999999
Q ss_pred cccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccC-C
Q 030339 75 AALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVP-A 153 (179)
Q Consensus 75 ~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~-~ 153 (179)
+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+|++ +
T Consensus 111 ~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~ 190 (263)
T 3lke_A 111 YAYGGGFNMMLACDRRIALRRAKFLENFHKMGISPDLGASYFLPRIIGYEQTMNLLLEGKLFTSEEALRLGLIQEICENK 190 (263)
T ss_dssp EEETHHHHGGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEEESSH
T ss_pred EeeHHHHHHHHHCCEEEEcCCCEEeCchHhhCCCCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCCcEecCCh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred ChHHHHHHHHHHHHhccCHHHHHhhC
Q 030339 154 GQAQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 154 ~~~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+++.+++.++++++++.||.+++.+|
T Consensus 191 ~~l~~~a~~~a~~la~~~~~a~~~~K 216 (263)
T 3lke_A 191 QELQERVKNYLKAVSEGYVPAIAATK 216 (263)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999887
|
| >1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-46 Score=293.73 Aligned_cols=179 Identities=27% Similarity=0.353 Sum_probs=166.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+.+|.+++++++.|+++|+|||||.+++.||+|.|+.++ ..+......+.+.+++++.++.++|||+||+|||+|+||
T Consensus 32 ~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg 111 (260)
T 1sg4_A 32 FLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSPAHYAGYWKAVQELWLRLYQSNLVLVSAINGACPAG 111 (260)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCCHHHHHHHHHHHHHHHHHHHTCSSEEEEEECEEBCHH
T ss_pred HHHHHHHHHHHHHhCCCceEEEEEcCCCCceEcCcCHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCEEEEECCeeehH
Confidence 6789999999999999999999999867899999999988 333334445556677889999999999999999999999
Q ss_pred hHHHHhhcCEEEEc--CCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHH
Q 030339 80 GLEMALACDLRICG--EAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 157 (179)
Q Consensus 80 G~~l~~~~D~~va~--~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~ 157 (179)
|++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++|+||+++||||+|++++++.
T Consensus 112 G~~lalacD~~ia~~~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~llltg~~~~a~eA~~~GLv~~vv~~~~l~ 191 (260)
T 1sg4_A 112 GCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVDQVVPEEQVQ 191 (260)
T ss_dssp HHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCHHHHHHHHHHTCCBCHHHHHHHTSSSEEECGGGHH
T ss_pred HHHHHHhCCEEEEecCCCCEEeCchhhhCCCCchhHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCCCEecCHHHHH
Confidence 99999999999999 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCHHHHHhhC
Q 030339 158 LKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 158 ~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+++.++++++++.||.+++.+|
T Consensus 192 ~~a~~~a~~la~~~~~a~~~~K 213 (260)
T 1sg4_A 192 STALSAIAQWMAIPDHARQLTK 213 (260)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999998876
|
| >3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-46 Score=295.66 Aligned_cols=178 Identities=30% Similarity=0.443 Sum_probs=160.2
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCc-------hhHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSP-------SEIHFYVNTLRSTFSFLEALPIPTIAVI 72 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~kp~ia~v 72 (179)
|+.+|.+++++++.|+++|+|||||. |+.||+|.|+.++ .... .....+.+.++.++.++.++||||||+|
T Consensus 52 ~~~~L~~al~~~~~d~~vr~vVltg~-G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 130 (290)
T 3sll_A 52 VMLPFKQMLVDISHDNDVRAVVITGA-GKGFCSGADQKSAGPIPHIGGLTQPTIALRSMELLDEVILTLRRMHQPVIAAI 130 (290)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEEEEES-TTCSBCC------CCCSSCTTCCHHHHHHHHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEECC-CCCeeCCcChHHHhcccccccccchhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 57899999999999999999999999 6999999999988 2111 1244566777889999999999999999
Q ss_pred cccccchhHHHHhhcCEEEEcCCceeecccccccccCC-cchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCcccccc
Q 030339 73 DGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPG-AGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYV 151 (179)
Q Consensus 73 ~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~-~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~ 151 (179)
||+|+|||++|+++||+||++++++|++||+++|++|+ +|++++|++++|..++++++++|++++|+||+++||||+|+
T Consensus 131 ~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLV~~vv 210 (290)
T 3sll_A 131 NGAAIGGGLCLALACDVRVASQDAYFRAAGINNGLTASELGLSYLLPRAIGTSRASDIMLTGRDVDADEAERIGLVSRKV 210 (290)
T ss_dssp CSEEETHHHHHHHHSSEEEEETTCEEECTTTTTTSCSCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEEE
T ss_pred CCeehHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCcccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEEe
Confidence 99999999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhccCHHHHHhhC
Q 030339 152 PAGQAQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 152 ~~~~~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
|++++.+++.++++++++.||.+++.+|
T Consensus 211 ~~~~l~~~a~~~a~~la~~~~~a~~~~K 238 (290)
T 3sll_A 211 ASESLLEECYAIGERIAGFSRPGIELTK 238 (290)
T ss_dssp CGGGHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999999887
|
| >2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-46 Score=292.07 Aligned_cols=178 Identities=35% Similarity=0.596 Sum_probs=164.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEe-CCCCccccccCccccccCchhHHHHHHHH-HHHHHHHhcCCCcEEEEEcccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRS-SVPKVFCAGADLKVLQMSPSEIHFYVNTL-RSTFSFLEALPIPTIAVIDGAALG 78 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g-~~~~~F~~G~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~kp~ia~v~G~a~g 78 (179)
|+.+|.+++++++.|+++|+||||| . ++.||+|.|++++.........+.+.+ ++++.++.++|||+||+|||+|+|
T Consensus 36 ~~~~L~~al~~~~~d~~vr~vVltg~~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 114 (265)
T 2ppy_A 36 FYKEFNAAIDDIRFDPDIKVVIVMSDV-PKFFSAGADINFLRSADPRFKTQFCLFCNETLDKIARSPQVYIACLEGHTVG 114 (265)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEEEEECS-TTEEECCBCHHHHTTSCHHHHHHHHHHHHHHHHHHHHSSSEEEEEECSEEET
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEEcCC-CCeeeeCcCHHHHhccchhHHHHHHHHHHHHHHHHHcCCCCEEEEECCEEee
Confidence 5789999999999999999999999 6 799999999998732322333444556 788899999999999999999999
Q ss_pred hhHHHHhhcCEEEEcCCc-eeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHH
Q 030339 79 GGLEMALACDLRICGEAA-LLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 157 (179)
Q Consensus 79 ~G~~l~~~~D~~va~~~a-~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~ 157 (179)
||++|+++||+||+++++ +|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+|++++++.
T Consensus 115 gG~~lalacD~ria~~~ag~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~ 194 (265)
T 2ppy_A 115 GGLEMALACDLRFMGDEAGKIGLPEVSLGVLAGTGGTQRLARLIGYSRALDMNITGETITPQEALEIGLVNRVFPQAETR 194 (265)
T ss_dssp HHHHHHHTSSEEEEETTCCCEECCGGGGTCCCTTTHHHHHHHHHCHHHHHHHHHHCCCBCHHHHHHHTSSSEEECGGGHH
T ss_pred HHHHHHHhCCEEEEeCCCCEEECcccccCCCCCchHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHCCCcceecCHHHHH
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCHHHHHhhC
Q 030339 158 LKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 158 ~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+++.+++++++++||.+++.+|
T Consensus 195 ~~a~~~a~~la~~~~~a~~~~K 216 (265)
T 2ppy_A 195 ERTREYARKLANSATYAVSNIK 216 (265)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999998876
|
| >1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-46 Score=293.55 Aligned_cols=178 Identities=24% Similarity=0.374 Sum_probs=164.3
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccC-----chhH-HHHHHHHHHHHHHHhcCCCcEEEEEcc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMS-----PSEI-HFYVNTLRSTFSFLEALPIPTIAVIDG 74 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~kp~ia~v~G 74 (179)
|+.+|.+++++++.|+++|+|||||. |+.||+|.|++++... .... ..+.+.+++++.++.++||||||+|||
T Consensus 31 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 109 (269)
T 1nzy_A 31 AMQEVTDALNRAEEDDSVGAVMITGA-EDAFCAGFYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAING 109 (269)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEES-TTCSBCCBCGGGSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCSSCEEEEECS
T ss_pred HHHHHHHHHHHHhhCCCeeEEEEECC-CCCcccCcCHHHHhhcccccChHHHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 67899999999999999999999999 6999999999988322 1111 244455778889999999999999999
Q ss_pred cccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCC
Q 030339 75 AALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG 154 (179)
Q Consensus 75 ~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~ 154 (179)
+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+|++++
T Consensus 110 ~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~ 189 (269)
T 1nzy_A 110 VAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRVYPKD 189 (269)
T ss_dssp EEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHHHHHHHHHHHHCCCBCHHHHHHHTSCSCEECHH
T ss_pred eeecHHHHHHHhCCEEEecCCCEEeCcccccCCCCCccHHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCccEeeCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhccCHHHHHhhC
Q 030339 155 QAQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 155 ~~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
++.+++.+++++++++||.+++.+|
T Consensus 190 ~l~~~a~~~a~~la~~~p~a~~~~K 214 (269)
T 1nzy_A 190 EFREVAWKVARELAAAPTHLQVMAK 214 (269)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999998876
|
| >3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-46 Score=289.49 Aligned_cols=173 Identities=25% Similarity=0.416 Sum_probs=161.8
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchh
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G 80 (179)
|+.+|.+++++++.|+++|+|||||. ++.||+|.|++++.. ..+.+.++.++.++.++||||||+|||+|+|+|
T Consensus 34 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~-----~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG 107 (255)
T 3p5m_A 34 MLEELSVHIRDAEADESVRAVLLTGA-GRAFCSGGDLTGGDT-----AGAADAANRVVRAITSLPKPVIAGVHGAAVGFG 107 (255)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEES-SSCSBCEECC---CH-----HHHHHHHHHHHHHHHHCSSCEEEEECSEEETHH
T ss_pred HHHHHHHHHHHHhhCCCeEEEEEECC-CCCccCCCChhhhcc-----hHHHHHHHHHHHHHHhCCCCEEEEeCCeehhhH
Confidence 67899999999999999999999999 699999999998741 145667778899999999999999999999999
Q ss_pred HHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHHH
Q 030339 81 LEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKA 160 (179)
Q Consensus 81 ~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~a 160 (179)
++|+++||+||++++++|++||+++|++|+++++++|++++|..++++++++|++++|+||+++||||+|+|++++.+++
T Consensus 108 ~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a 187 (255)
T 3p5m_A 108 CSLALACDLVVAAPASYFQLAFTRVGLMPDGGASALLPLLIGRARTSRMAMTAEKISAATAFEWGMISHITSADEYESVL 187 (255)
T ss_dssp HHHHHHSSEEEECTTCEEECGGGGGTCCCCTTHHHHTHHHHCHHHHHHHHHHCCCEEHHHHHHTTSCSEECCTTCHHHHH
T ss_pred HHHHHHCCEEEEcCCcEEeCcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCCCEeeCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCHHHHHhhC
Q 030339 161 LEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 161 ~~~a~~~~~~~~~a~~~~K 179 (179)
.++++++++.||.+++.+|
T Consensus 188 ~~~a~~la~~~~~a~~~~K 206 (255)
T 3p5m_A 188 TDVLRSVSGGPTLAFGWTK 206 (255)
T ss_dssp HHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999886
|
| >2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-46 Score=290.07 Aligned_cols=177 Identities=27% Similarity=0.450 Sum_probs=158.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHH-HHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVN-TLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+.+|.+++++++.|+++++|||||. |+.||+|.|++++..... ...+.+ .+++++.++.++||||||+|||+|+||
T Consensus 31 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg 108 (257)
T 2ej5_A 31 MNAEVTKALKQAGADPNVRCVVITGA-GRAFCAGEDLSGVTEEMD-HGDVLRSRYAPMMKALHHLEKPVVAAVNGAAAGA 108 (257)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEES-SSCSBCCBCC-------C-HHHHHHHTHHHHHHHHHHCCSCEEEEECSEEETH
T ss_pred HHHHHHHHHHHHhhCCCeEEEEEECC-CCCccCCcCHHHHhhccc-hhHHHHHHHHHHHHHHHhCCCCEEEEECccccch
Confidence 57899999999999999999999998 799999999998722111 111112 256788899999999999999999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
|++|+++||+||++++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|++++++.++
T Consensus 109 G~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~ 188 (257)
T 2ej5_A 109 GMSLALACDFRLLSEKASFAPAFIHVGLVPDAGHLYYLPRLVGRAKALELAVLGEKVTAEEAAALGLATKVIPLSDWEEE 188 (257)
T ss_dssp HHHHHHHSSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTCCSEEECGGGHHHH
T ss_pred hHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCcceecChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030339 160 ALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 160 a~~~a~~~~~~~~~a~~~~K 179 (179)
+.+++++++++||.+++.+|
T Consensus 189 a~~~a~~la~~~~~a~~~~K 208 (257)
T 2ej5_A 189 VKQFAERLSAMPTKAIGLIK 208 (257)
T ss_dssp HHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999998876
|
| >3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-47 Score=301.23 Aligned_cols=179 Identities=29% Similarity=0.422 Sum_probs=162.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCc------hhHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSP------SEIHFYVNTLRSTFSFLEALPIPTIAVIDG 74 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G 74 (179)
|+.+|.+++++++.|+++|+|||||.+++.||+|.|+.++.... .........++.++.++.++||||||+|||
T Consensus 36 ~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G 115 (287)
T 3gkb_A 36 MMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIGEKMDALQELAASAPADVNVFQAVGELIRHQPQVTIVKLAG 115 (287)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCTTGGGSHHHHHHHHHTSCTTCCTTHHHHHHHHHCSSEEEEEECS
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEecCCCCceeCCcCHHHHhhccccchhhHHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 67899999999999999999999999668999999999872111 001112234567888999999999999999
Q ss_pred cccchhHHHHhhcCEEEEcC-CceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCC
Q 030339 75 AALGGGLEMALACDLRICGE-AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA 153 (179)
Q Consensus 75 ~a~g~G~~l~~~~D~~va~~-~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~ 153 (179)
+|+|||++|+++||+||+++ +++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+|+|+
T Consensus 116 ~a~GgG~~lalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~~ 195 (287)
T 3gkb_A 116 KARGGGAEFVAAADMAFAAAETAGLGQIEALMGIIPGGGGTQYLRGRVGRNRALEVVLTADLFDAETAASYGWINRALPA 195 (287)
T ss_dssp EEETHHHHHHHHSSEEEEETTTCEEECGGGGGTSCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEEECH
T ss_pred eeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCCchHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCCcEEeCh
Confidence 99999999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhccCHHHHHhhC
Q 030339 154 GQAQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 154 ~~~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+++.+++.+++++++++||.+++.+|
T Consensus 196 ~~l~~~a~~lA~~la~~~p~a~~~~K 221 (287)
T 3gkb_A 196 DELDEYVDRVARNIAALPDGVIEAAK 221 (287)
T ss_dssp HHHHHHHHHHHHHHHTSCTTHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999887
|
| >3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-46 Score=291.05 Aligned_cols=177 Identities=25% Similarity=0.399 Sum_probs=165.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccccc-------CchhHHHHHHHHHHHHHHHhcCCCcEEEEEc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQM-------SPSEIHFYVNTLRSTFSFLEALPIPTIAVID 73 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~ 73 (179)
|+.+|.++++.++.|+++|+|||||. |+.||+|.|++++.. .......+.+.++.++.++.++|||+||+||
T Consensus 34 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 112 (263)
T 3l3s_A 34 MIAALHDALRRAMGDDHVHVLVIHGP-GRIFCAGHDLKEIGRHRADPDEGRAFVTDLFEACSALMLDLAHCPKPTIALVE 112 (263)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEEEECC-SSEEECCSCSCCCCC-----CCSHHHHHHHHHHHHHHHHHHHTCSSCEEEEES
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCCccCCcChHHHhhccccccccHHHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 57899999999999999999999999 699999999999822 2334456677788899999999999999999
Q ss_pred ccccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCC
Q 030339 74 GAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA 153 (179)
Q Consensus 74 G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~ 153 (179)
|+|+|||++|+++||+||++++++|++||+++|++ +++++++|++++|..++++++++|++++|+||+++||||+|+|+
T Consensus 113 G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~-~~g~~~~l~r~vG~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~ 191 (263)
T 3l3s_A 113 GIATAAGLQLMAACDLAYASPAARFCLPGVQNGGF-CTTPAVAVSRVIGRRAVTEMALTGATYDADWALAAGLINRILPE 191 (263)
T ss_dssp SEEETHHHHHHHHSSEEEECTTCEEECCTTTTTSC-CHHHHHHHHTTSCHHHHHHHHHHCCEEEHHHHHHHTSSSEECCH
T ss_pred CEEEHHHHHHHHHCCEEEecCCCEEeCchhccCCC-CccHHHHHHHHcCHHHHHHHHHcCCCCCHHHHHHCCCccEEeCH
Confidence 99999999999999999999999999999999999 56789999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhccCHHHHHhhC
Q 030339 154 GQAQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 154 ~~~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+++.+++.+++++++++||.+++.+|
T Consensus 192 ~~l~~~a~~~a~~la~~~~~a~~~~K 217 (263)
T 3l3s_A 192 AALATHVADLAGALAARNQAPLRRGL 217 (263)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999887
|
| >3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-46 Score=293.31 Aligned_cols=176 Identities=23% Similarity=0.354 Sum_probs=164.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccc---cCchhHHHHHHHHHHHHHHHhcCCCcEEEEEccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ---MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 77 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~ 77 (179)
|+.+|.+++++++.|+++|+|||||. |+.||+|.|++++. .+......+...++.++.++.++||||||+|||+|+
T Consensus 56 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~ 134 (276)
T 3rrv_A 56 LHVGLARLWQRLTDDPTARAAVITGA-GRAFSAGGDFGYLKELSADADLRAKTIRDGREIVLGMARCRIPVVAAVNGPAV 134 (276)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEES-TTCSBCCBCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSCEE
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCcccCCcCHHHHhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECceee
Confidence 57899999999999999999999999 69999999999882 233344556667788999999999999999999999
Q ss_pred chhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHH
Q 030339 78 GGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 157 (179)
Q Consensus 78 g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~ 157 (179)
|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+|+ +++.
T Consensus 135 GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~ellltG~~i~A~eA~~~GLv~~vv--~~l~ 212 (276)
T 3rrv_A 135 GLGCSLVALSDIVYIAENAYLADPHVQVGLVAADGGPLTWPLHISLLLAKEYALTGTRISAQRAVELGLANHVA--DDPV 212 (276)
T ss_dssp THHHHHHHTSSEEEEETTCEEECCHHHHTCCCCSSHHHHGGGTSCHHHHHHHHHHCCCEEHHHHHHHTSCSEEE--SSHH
T ss_pred HHHHHHHHHCCEEEEeCCCEEECchhccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCHHHHH--HHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHhccCHHHHHhhC
Q 030339 158 LKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 158 ~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+++.++++++++.||.+++.+|
T Consensus 213 ~~a~~~A~~la~~~~~a~~~~K 234 (276)
T 3rrv_A 213 AEAIACAKKILELPQQAVESTK 234 (276)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999887
|
| >2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-46 Score=289.80 Aligned_cols=177 Identities=25% Similarity=0.322 Sum_probs=163.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEe-CCCCccccccCcccc-ccCchhH-HHHHHHHHHHHHHHhcCCCcEEEEEccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRS-SVPKVFCAGADLKVL-QMSPSEI-HFYVNTLRSTFSFLEALPIPTIAVIDGAAL 77 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g-~~~~~F~~G~D~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~ 77 (179)
|+++|.+++++++.|+++|+||||| . |+.||+|.|++++ ....... ..+...+++++.++.++|||+||+|||+|+
T Consensus 28 ~~~~l~~al~~~~~d~~vr~vVltg~~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~ 106 (250)
T 2a7k_A 28 LETSVKDALARANADDSVRAVVVYGGA-ERSFSAGGDFNEVKQLSRSEDIEEWIDRVIDLYQAVLNVNKPTIAAVDGYAI 106 (250)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEECCT-TSCSBCBSCHHHHHTC-CHHHHHHHHHHHHHHHHHHHTCCSCEEEEECSEEE
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEECCC-CCCccCCcCHHHHhhcCchhhHHHHHHHHHHHHHHHHcCCCCEEEEECCeEe
Confidence 5789999999999999999999999 6 7999999999988 3222222 344456778889999999999999999999
Q ss_pred chhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHH
Q 030339 78 GGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 157 (179)
Q Consensus 78 g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~ 157 (179)
|||++|+++||+||++++++|++||+++|++|+++++ ++++++|.+++++++++|++++|+||+++||||+|++++++.
T Consensus 107 GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~ 185 (250)
T 2a7k_A 107 GMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGAA-ILGFTHGFSTMQEIIYQCQSLDAPRCVDYRLVNQVVESSALL 185 (250)
T ss_dssp THHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHHH-HHHHHHCHHHHHHHHHHCCCBCHHHHHHHTCCSEEECHHHHH
T ss_pred HHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCcHHH-HHHHHhHHHHHHHHHHcCCcccHHHHHHcCCcceecCHHHHH
Confidence 9999999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCHHHHHhhC
Q 030339 158 LKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 158 ~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+++.+++++++++||.+++.+|
T Consensus 186 ~~a~~~a~~la~~~~~a~~~~K 207 (250)
T 2a7k_A 186 DAAITQAHVMASYPASAFINTK 207 (250)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999998876
|
| >3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-47 Score=295.60 Aligned_cols=178 Identities=23% Similarity=0.308 Sum_probs=159.2
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccC-chhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMS-PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 78 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g 78 (179)
|+.+|.+++++++.|+++|+|||||. |+.||+|.|++++ ... ..........++.++.++.++||||||+|||+|+|
T Consensus 34 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 112 (256)
T 3qmj_A 34 LYDATAQALLDAADDPQVAVVLLTGS-GRGFSAGTDLAEMQARITDPNFSEGKFGFRGLIKALAGFPKPLICAVNGLGVG 112 (256)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEES-TTEEECCBCHHHHHHHHHSSSCCCCSSHHHHHHHHHHHCCSCEEEEECSEEET
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCCcccCcCHHHHhhcccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeehh
Confidence 57899999999999999999999999 6999999999887 110 01101122345678889999999999999999999
Q ss_pred hhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHH
Q 030339 79 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 158 (179)
Q Consensus 79 ~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~ 158 (179)
||++|+++||+||++++++|++||+++|++|+++++++|++++|..++++++++|++++|+||+++||||+|+|++++.+
T Consensus 113 gG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~ 192 (256)
T 3qmj_A 113 IGATILGYADLAFMSSTARLKCPFTSLGVAPEAASSYLLPQLVGRQNAAWLLMSSEWIDAEEALRMGLVWRICSPEELLP 192 (256)
T ss_dssp HHHHGGGGCSEEEEETTCEEECCGGGC---CCTTHHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHTSSSEEECGGGHHH
T ss_pred HHHHHHHhCCEEEEeCCCEEECcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEEeCHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030339 159 KALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 159 ~a~~~a~~~~~~~~~a~~~~K 179 (179)
++.++++++++.||.+++.+|
T Consensus 193 ~a~~~a~~la~~~~~a~~~~K 213 (256)
T 3qmj_A 193 EARRHAEILAAKPISSLMAVK 213 (256)
T ss_dssp HHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999887
|
| >3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-46 Score=292.89 Aligned_cols=176 Identities=35% Similarity=0.558 Sum_probs=163.2
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccc-cCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+.+|.+++++++.|+++|+|||||. ++.||+|.|++++. ..... .+.+.++.++.++.++||||||+|||+|+||
T Consensus 38 ~~~~l~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~--~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg 114 (263)
T 3moy_A 38 LEAEVLDAARDFDADLEIGAIVVTGS-ERAFAAGADIAEMVTLTPHQ--ARERNLLSGWDSLTQVRKPIVAAVAGYALGG 114 (263)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEECC-SSEEEESBCHHHHTTCCHHH--HHHTTTTHHHHHHTTCCSCEEEEECBEEETH
T ss_pred HHHHHHHHHHHHhcCCCceEEEEECC-CCCeeCCcChHHHhccCchh--HHHHHHHHHHHHHHhCCCCEEEEECCEeehH
Confidence 57899999999999999999999996 89999999999883 22222 2244556778899999999999999999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
|++|+++||+||++++++|++||+++|++|+++++++|++++|..++++++++|++++|+||+++||||+|++++++.++
T Consensus 115 G~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~ 194 (263)
T 3moy_A 115 GCELAMLCDLVIAADTARFGQPEITLGILPGLGGTQRLTRAVGKAKAMDLCLTGRSLTAEEAERVGLVSRIVPAADLLDE 194 (263)
T ss_dssp HHHHHHHSSEEEEETTCEEECGGGGGTCCCSSSTTTHHHHHHCHHHHHHHHHHCCEEEHHHHHHTTSCSEEECGGGHHHH
T ss_pred HHHHHHHCCEEEecCCCEEeCcccccCCCCchhHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEecCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030339 160 ALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 160 a~~~a~~~~~~~~~a~~~~K 179 (179)
+.+++++++++||.+++.+|
T Consensus 195 a~~~a~~la~~~~~a~~~~K 214 (263)
T 3moy_A 195 ALAVAQRIARMSRPAGRAVK 214 (263)
T ss_dssp HHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999886
|
| >2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-46 Score=293.53 Aligned_cols=177 Identities=24% Similarity=0.431 Sum_probs=163.1
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccccc--CchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQM--SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 78 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g 78 (179)
|+.+|.++++.++.|+++|+|||||. |+.||+|.|++++.. ..+....+...+++++.++.++||||||+|||+|+|
T Consensus 61 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 139 (287)
T 2vx2_A 61 MLKSLQSDILHDADSNDLKVIIISAE-GPVFSSGHDLKELTEEQGRDYHAEVFQTCSKVMMHIRNHPVPVIAMVNGLATA 139 (287)
T ss_dssp HHHHHHHHHHTTTTCTTCCEEEEEES-SSEEECCSCCC-CCGGGCHHHHHHHHHHHHHHHHHHHTCSSCEEEEECSEEET
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEECC-CCCccCCcCHHHHhcccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEc
Confidence 67899999999999999999999999 799999999998822 222233455667788899999999999999999999
Q ss_pred hhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHH
Q 030339 79 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 158 (179)
Q Consensus 79 ~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~ 158 (179)
||++|+++||+||++++++|++||+++|++|++++++ |++++|..++++++++|++++|+||+++||||+|++++++.+
T Consensus 140 gG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~-L~r~vG~~~A~~llltg~~i~A~eA~~~GLv~~vv~~~~l~~ 218 (287)
T 2vx2_A 140 AGCQLVASCDIAVASDKSSFATPGVNVGLFCSTPGVA-LARAVPRKVALEMLFTGEPISAQEALLHGLLSKVVPEAELQE 218 (287)
T ss_dssp HHHHHHHHSSEEEEETTCEEECCGGGGTCCCHHHHHH-HHTTSCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHH
T ss_pred HHHHHHHhCCEEEEcCCCEEECchhhhCCCCchHHHH-HHHHhhHHHHHHHHHhCCCCCHHHHHHCCCcceecCHHHHHH
Confidence 9999999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030339 159 KALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 159 ~a~~~a~~~~~~~~~a~~~~K 179 (179)
++.+++++++++||.+++.+|
T Consensus 219 ~a~~~a~~la~~~p~a~~~~K 239 (287)
T 2vx2_A 219 ETMRIARKIASLSRPVVSLGK 239 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999998876
|
| >1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-46 Score=292.16 Aligned_cols=177 Identities=26% Similarity=0.361 Sum_probs=163.1
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-cc---CchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 76 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a 76 (179)
|+.+|.+++++++.|+++|+|||||. |+.||+|.|++ + .. ..+....+.+.+++++.++.++|||+||+|||+|
T Consensus 38 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a 115 (264)
T 1wz8_A 38 LHRGLARVWRDLEAVEGVRAVLLRGE-GGVFSAGGSFG-LIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVA 115 (264)
T ss_dssp HHHHHHHHHHHHTTCTTCSEEEEEEG-GGCCBCCBCHH-HHHHHHHCHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEE
T ss_pred HHHHHHHHHHHHhcCCCeeEEEEECC-CCCCcccCccc-cccccccchHHHHHHHHHHHHHHHHHHcCCCCEEEEECCee
Confidence 67899999999999999999999999 69999999998 7 21 1111223445677888999999999999999999
Q ss_pred cchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChH
Q 030339 77 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 156 (179)
Q Consensus 77 ~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~ 156 (179)
+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+|++++++
T Consensus 116 ~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l 195 (264)
T 1wz8_A 116 VGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAKYHLLLNEPLTGEEAERLGLVALAVEDEKV 195 (264)
T ss_dssp ETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCHHHHHHHHHHTCCEEHHHHHHHTSSSEEECGGGH
T ss_pred echhHHHHHhCCEEEecCCCEEeCchhhcCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCceeecChhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCHHHHHhhC
Q 030339 157 QLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 157 ~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
.+++.+++++++++||.+++.+|
T Consensus 196 ~~~a~~~a~~la~~~~~a~~~~K 218 (264)
T 1wz8_A 196 YEKALEVAERLAQGPKEALHHTK 218 (264)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999998876
|
| >2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-46 Score=290.45 Aligned_cols=177 Identities=32% Similarity=0.582 Sum_probs=161.3
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchh
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G 80 (179)
|+.+|.+++++++.|+++|+|||||. |+.||+|.|+.++.........+...+ +++.++.++|||+||+|||+|+|||
T Consensus 33 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~-~~~~~l~~~~kPvIAav~G~a~GgG 110 (258)
T 2pbp_A 33 MVAEIVAAVEAFDRNEKVRVIVLTGR-GRAFAAGADIQEMAKDDPIRLEWLNQF-ADWDRLSIVKTPMIAAVNGLALGGG 110 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEES-TTEEECCCCHHHHHTCCHHHHHHHCTT-HHHHHHHTCCSCEEEEECSEEETHH
T ss_pred HHHHHHHHHHHHhhCCCceEEEEECC-CCCccCCcCHHHHhcccchhHHHHHHH-HHHHHHHhCCCCEEEEEcCEEEhHH
Confidence 57899999999999999999999998 799999999988722221122222333 5678899999999999999999999
Q ss_pred HHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHHH
Q 030339 81 LEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKA 160 (179)
Q Consensus 81 ~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~a 160 (179)
++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+|+|++++.+++
T Consensus 111 ~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a 190 (258)
T 2pbp_A 111 FELALSCDLIVASSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKRALEWLWTGARMSAKEAEQLGIVNRVVSPELLMEET 190 (258)
T ss_dssp HHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECGGGHHHHH
T ss_pred HHHHHhCCEEEEcCCCEEECcccccCCCCcccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCcceeeChHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCHHHHHhhC
Q 030339 161 LEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 161 ~~~a~~~~~~~~~a~~~~K 179 (179)
.+++++++++||.+++.+|
T Consensus 191 ~~~a~~la~~~~~a~~~~K 209 (258)
T 2pbp_A 191 MRLAGRLAEQPPLALRLIK 209 (258)
T ss_dssp HHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHH
Confidence 9999999999999998876
|
| >3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-46 Score=292.35 Aligned_cols=177 Identities=29% Similarity=0.404 Sum_probs=166.2
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-c-cCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-Q-MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 78 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g 78 (179)
|+.+|.+++++++.|+++|+|||||. |+.||+|.|++++ . ........+.+.++.++.++.++|||+||+|||+|+|
T Consensus 54 ~~~~L~~al~~~~~d~~vr~vVltg~-G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 132 (286)
T 3myb_A 54 MLAALGEAFGTLAEDESVRAVVLAAS-GKAFCAGHDLKEMRAEPSREYYEKLFARCTDVMLAIQRLPAPVIARVHGIATA 132 (286)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEEEEEC-SSCSBCCBCHHHHHSSCCHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSCEET
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEECC-CCCccCCcChhhhhccccHHHHHHHHHHHHHHHHHHHcCCCCEEEEECCeehH
Confidence 57899999999999999999999999 6999999999998 3 2334456667778889999999999999999999999
Q ss_pred hhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHH
Q 030339 79 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 158 (179)
Q Consensus 79 ~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~ 158 (179)
||++|+++||+||++++++|++||+++|++ +++++++|++++|..++++++++|++++|+||+++||||+|++++++.+
T Consensus 133 gG~~lalacD~ria~~~a~f~~pe~~lGl~-~~g~~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~ 211 (286)
T 3myb_A 133 AGCQLVAMCDLAVATRDARFAVSGINVGLF-CSTPGVALSRNVGRKAAFEMLVTGEFVSADDAKGLGLVNRVVAPKALDD 211 (286)
T ss_dssp HHHHHHHHSSEEEEETTCEEECGGGGGTCC-CHHHHHHHTTTSCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHH
T ss_pred HHHHHHHhCCEEEEcCCCEEECcccccCCC-CchHHHHHHHHcCHHHHHHHHHcCCCCCHHHHHHCCCCcEecCHHHHHH
Confidence 999999999999999999999999999999 7888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030339 159 KALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 159 ~a~~~a~~~~~~~~~a~~~~K 179 (179)
++.++++++++.||.+++.+|
T Consensus 212 ~a~~~a~~la~~~p~a~~~~K 232 (286)
T 3myb_A 212 EIEAMVSKIVAKPRAAVAMGK 232 (286)
T ss_dssp HHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999876
|
| >3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-46 Score=286.84 Aligned_cols=176 Identities=20% Similarity=0.275 Sum_probs=163.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchh
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G 80 (179)
|+.+|.+++++++.|+ ++|||||. |+.||+|.|++++....+....+.+..+.++.++.++|||+||+|||+|+|||
T Consensus 33 ~~~~L~~al~~~~~d~--~~vvltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG 109 (232)
T 3ot6_A 33 VIIAFNAALDQAEKDR--AIVIVTGQ-PGILSGGYDLKVMTSSAEAAINLVAQGSTLARRMLSHPFPIIVACPGHAVAKG 109 (232)
T ss_dssp HHHHHHHHHHHHHHTT--CEEEEECB-TEEEECCBCHHHHHHCHHHHHHHHHHHHHHHHHHHTCSSCEEEECCEEEETHH
T ss_pred HHHHHHHHHHHHhcCC--CEEEEECC-CCCccCCcCHHHHhhChHHHHHHHHHHHHHHHHHHcCCCCEEEEECCEeehHH
Confidence 5789999999999874 89999998 79999999999884344455566777788999999999999999999999999
Q ss_pred HHHHhhcCEEEEcCC-ceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 81 LEMALACDLRICGEA-ALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 81 ~~l~~~~D~~va~~~-a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
++|+++||+||++++ ++|++||+++|++|++++++++++++|..++++++++|++++|+||+++||||+|+|++++.++
T Consensus 110 ~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~g~~~l~~~ig~~~a~~l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~ 189 (232)
T 3ot6_A 110 AFLLLSADYRIGVAGPFSIGLNEVQIGMTMHHAGIELARDRLRKSAFNRSVINAEMFDPEGAMAAGFLDKVVSVEELQGA 189 (232)
T ss_dssp HHHHTTSSEEEEECSSCCEECCTTTTTCCCCHHHHHHHHHHSCHHHHHHHHTSCCEECHHHHHHHTSCSEEECTTTHHHH
T ss_pred HHHHHHCCEEEEeCCCcEEECcccccCCCCchhHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCCCEecCHHHHHHH
Confidence 999999999999998 8999999999999888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030339 160 ALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 160 a~~~a~~~~~~~~~a~~~~K 179 (179)
+.++++++++.||.+++.+|
T Consensus 190 a~~~a~~la~~~~~a~~~~K 209 (232)
T 3ot6_A 190 ALAVAAQLKKINMNAHKKTK 209 (232)
T ss_dssp HHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999887
|
| >3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-46 Score=292.35 Aligned_cols=176 Identities=24% Similarity=0.345 Sum_probs=160.5
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccc---cCchhHHHHHHHHHHHHHHHhcCCCcEEEEEccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ---MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 77 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~ 77 (179)
|+.+|.+++++++.|+++|+|||||. |+.||+|.|++++. ............+..++.++.++|||+||+|||+|+
T Consensus 33 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~ 111 (266)
T 3fdu_A 33 LYLWIAKALDEADQNKDVRVVVLRGA-EHDFTAGNDMKDFMGFVQNPNAGPAGQVPPFVLLKSAARLSKPLIIAVKGVAI 111 (266)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEES-SSCSBCCBCHHHHHHHHHSCCCSCGGGSHHHHHHHHHHHCCSCEEEEECSEEE
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEECC-CCCeECCcCHHHHhhhccccchhhHHHHHHHHHHHHHHhCCCCEEEEECCEEe
Confidence 57899999999999999999999998 69999999998873 211111122344567888999999999999999999
Q ss_pred chhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHH
Q 030339 78 GGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 157 (179)
Q Consensus 78 g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~ 157 (179)
|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+|+| ++.
T Consensus 112 GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~i~A~eA~~~GLv~~vv~--~l~ 189 (266)
T 3fdu_A 112 GIGVTILLQADLVFADNTALFQIPFVSLGLSPEGGASQLLVKQAGYHKAAELLFTAKKFNAETALQAGLVNEIVE--DAY 189 (266)
T ss_dssp THHHHGGGGCSEEEECTTCEEECCTTTTTCCCCTTHHHHHHHHHCHHHHHHHHHHCCEECHHHHHHTTSCSEECS--CHH
T ss_pred hHHHHHHHhCCEEEEcCCCEEECchhhhCCCCcchHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHCCCHHHHHH--HHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998 899
Q ss_pred HHHHHHHHHHhccCHHHHHhhC
Q 030339 158 LKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 158 ~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+++.+++++++++||.+++.+|
T Consensus 190 ~~a~~~a~~la~~~~~a~~~~K 211 (266)
T 3fdu_A 190 ATAQATAQHLTALPLASLKQTK 211 (266)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999999887
|
| >3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-47 Score=297.42 Aligned_cols=178 Identities=23% Similarity=0.325 Sum_probs=160.2
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCchhHHHHHHHHHHHHHHH-hcCCCcEEEEEcccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFSFL-EALPIPTIAVIDGAALG 78 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~kp~ia~v~G~a~g 78 (179)
|+.+|.+++++++.|+++|+|||||. |+.||+|.|++++ .........+.+.+.+++.++ .++|||+||+|||+|+|
T Consensus 40 ~~~~l~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~kPvIAav~G~a~G 118 (258)
T 3lao_A 40 MLADLALAMGEYERSEESRCAVLFAH-GEHFTAGLDLMELAPKLAASGFRYPDGGVDPWGVVQPRRSKPLVVAVQGTCWT 118 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEES-SSCSBCCBCHHHHGGGCBTTBCCCCTTCCCTTSCSSSCCCSCEEEEECSEEET
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEECC-CCCeecCcCHHHHhhccchhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeEh
Confidence 57899999999999999999999999 6779999999987 222211111122233456778 89999999999999999
Q ss_pred hhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHH
Q 030339 79 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 158 (179)
Q Consensus 79 ~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~ 158 (179)
||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+|+|++++.+
T Consensus 119 gG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~ 198 (258)
T 3lao_A 119 AGIELMLNADIAVAARGTRFAHLEVLRGIPPLGGSTVRFPRAAGWTDAMRYILTGDEFDADEALRMRLLTEVVEPGEELA 198 (258)
T ss_dssp HHHHHHHTSSEEEEETTCEEECGGGGTCCCSSCCCCSHHHHHHCHHHHHHHHTTCCCEEHHHHHHTTSCSEEECTTCHHH
T ss_pred HHHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCCcEeeChhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030339 159 KALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 159 ~a~~~a~~~~~~~~~a~~~~K 179 (179)
++.+++++++++||.+++.+|
T Consensus 199 ~a~~~a~~la~~~~~a~~~~K 219 (258)
T 3lao_A 199 RALEYAERIARAAPLAVRAAL 219 (258)
T ss_dssp HHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999887
|
| >2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-45 Score=289.08 Aligned_cols=177 Identities=20% Similarity=0.332 Sum_probs=159.8
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCchh----HHHHHHHHHHHHHHHhcCCCcEEEEEccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSE----IHFYVNTLRSTFSFLEALPIPTIAVIDGA 75 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~kp~ia~v~G~ 75 (179)
|+.+|.+++++++.|+++ +|||||. |+.||+|.|++++ ...... ...+...+++++.++.++|||+||+|||+
T Consensus 54 ~~~~L~~al~~~~~d~~v-~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 131 (280)
T 2f6q_A 54 MYHEIMRALKAASKDDSI-ITVLTGN-GDYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGP 131 (280)
T ss_dssp HHHHHHHHHHHHHHSSCS-EEEEEES-TTCSBCCBCC----CCCTTHHHHHHHHHHHHHHHHHHHHHSCCSCEEEEECSC
T ss_pred HHHHHHHHHHHHhhCCCE-EEEEeCC-CCCcccCCCHHHHhhcCcchhhHHHHHHHHHHHHHHHHHHcCCCCEEEEECCe
Confidence 678999999999999999 9999998 7999999999988 222222 12233456778889999999999999999
Q ss_pred ccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCCh
Q 030339 76 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 155 (179)
Q Consensus 76 a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~ 155 (179)
|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+|+++++
T Consensus 132 a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~ 211 (280)
T 2f6q_A 132 AVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPDST 211 (280)
T ss_dssp EETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCHHHHHHHHTTCCCEEHHHHHHTTSCSEEECTTT
T ss_pred eehHHHHHHHhCCEEEECCCcEEECchHhhCCCCcccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCcceEECHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCHHHHHhhC
Q 030339 156 AQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 156 ~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+.+++.++++++++.||.+++.+|
T Consensus 212 l~~~a~~~a~~la~~~~~a~~~~K 235 (280)
T 2f6q_A 212 FQKEVWTRLKAFAKLPPNALRISK 235 (280)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999998876
|
| >3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-46 Score=292.87 Aligned_cols=176 Identities=36% Similarity=0.592 Sum_probs=160.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+.+|.+++++++.|+++|+|||||. ++.||+|.|++++ ...... .........+.++.++||||||+|||+|+||
T Consensus 53 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~--~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg 129 (278)
T 3h81_A 53 VMNEVTSAATELDDDPDIGAIIITGS-AKAFAAGADIKEMADLTFAD--AFTADFFATWGKLAAVRTPTIAAVAGYALGG 129 (278)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEEEECC-SSEEECCBCSHHHHTCCHHH--HHHHTTTGGGHHHHTCCSCEEEEECBEEETH
T ss_pred HHHHHHHHHHHHhhCCCeEEEEEECC-CCCeecCcCHHHHhccChhh--HHHHHHHHHHHHHHhCCCCEEEEECCeeehH
Confidence 57899999999999999999999997 8999999999988 322222 1222222237789999999999999999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
|++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+|++++++.++
T Consensus 130 G~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~ 209 (278)
T 3h81_A 130 GCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRVVPADDLLTE 209 (278)
T ss_dssp HHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHH
T ss_pred HHHHHHHCCEEEEcCCCEEECchhhcCcCCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHCCCccEEeChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030339 160 ALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 160 a~~~a~~~~~~~~~a~~~~K 179 (179)
+.+++++++++||.+++.+|
T Consensus 210 a~~~a~~la~~~p~a~~~~K 229 (278)
T 3h81_A 210 ARATATTISQMSASAARMAK 229 (278)
T ss_dssp HHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999876
|
| >1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-46 Score=291.49 Aligned_cols=178 Identities=30% Similarity=0.551 Sum_probs=162.8
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-cc-C-c---h------hHHHHHHHHHHHHHHHhcCCCcE
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QM-S-P---S------EIHFYVNTLRSTFSFLEALPIPT 68 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~-~-~---~------~~~~~~~~~~~~~~~~~~~~kp~ 68 (179)
|+.+|.+++++++.|+++|+|||||. |+.||+|.|++++ .. . . + ....+...+++++..+.++||||
T Consensus 32 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv 110 (275)
T 1dci_A 32 FWRELVECFQKISKDSDCRAVVVSGA-GKMFTSGIDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPV 110 (275)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEEEEES-TTCSBCCBCHHHHHHHHTSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHSSSCE
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCCccCCcChHHHhhcccccccchhhhhhHHHHHHHHHHHHHHHHHHhCCCCE
Confidence 67899999999999999999999999 7999999999887 21 0 0 1 12233455677888999999999
Q ss_pred EEEEcccccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCH-HHHHHHHhcCCCcCHHHHHhcCcc
Q 030339 69 IAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGK-SVAKDIIFTGRKVSGKDAMSLGLV 147 (179)
Q Consensus 69 ia~v~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~-~~a~~l~l~g~~~~a~~a~~~Glv 147 (179)
||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|. .++++++++|++++|+||+++|||
T Consensus 111 IAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~~A~~l~ltg~~~~a~eA~~~GLv 190 (275)
T 1dci_A 111 IAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLV 190 (275)
T ss_dssp EEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHGGGTCSCHHHHHHHHHHCCEEEHHHHHHHTSS
T ss_pred EEEECCeeeHHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCcHHHHHHHHHcCCCCCHHHHHHcCCc
Confidence 9999999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred ccccCC-ChHHHHHHHHHHHHhccCHHHHHhhC
Q 030339 148 NYYVPA-GQAQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 148 ~~v~~~-~~~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
|+|+++ +++.+++.+++++++++||.+++.+|
T Consensus 191 ~~vv~~~~~l~~~a~~~a~~la~~~p~a~~~~K 223 (275)
T 1dci_A 191 SRVFPDKDVMLNAAFALAADISSKSPVAVQGSK 223 (275)
T ss_dssp SEEESSHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred ceecCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999998 99999999999999999999998876
|
| >4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-46 Score=292.96 Aligned_cols=179 Identities=27% Similarity=0.425 Sum_probs=157.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEe-----CCCCccccccCccccccC-c-hhHHHHHHHHHHHHHHHhcCCCcEEEEEc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRS-----SVPKVFCAGADLKVLQMS-P-SEIHFYVNTLRSTFSFLEALPIPTIAVID 73 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g-----~~~~~F~~G~D~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~kp~ia~v~ 73 (179)
|+.+|.+++++++.|+++|+||||| .|++.||+|.|++++... . .........+..++..+.++||||||+||
T Consensus 38 ~~~~L~~al~~~~~d~~vr~vVltg~~~~~~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 117 (275)
T 4eml_A 38 TVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGDQSVRGEGGYIDDQGTPRLNVLDLQRLIRSMPKVVIALVA 117 (275)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEECCCCTTSCCEEECCBCCC--------------CCCHHHHHHHHHHSSSEEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCceEEEEeCCCcCcCCCCceeCCcChhhhhcccccchhhHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 5789999999999999999999999 744799999999987221 1 11111111246678889999999999999
Q ss_pred ccccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCC
Q 030339 74 GAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA 153 (179)
Q Consensus 74 G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~ 153 (179)
|+|+|||++|+++||+||++++++|++||+++|++|+++++++|++++|..++++++++|++++|+||+++||||+|+++
T Consensus 118 G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~~g~~~L~r~vG~~~A~~llltg~~i~A~eA~~~GLv~~vv~~ 197 (275)
T 4eml_A 118 GYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGFGSSYLARIVGQKKAREIWYLCRQYSAQEAERMGMVNTVVPV 197 (275)
T ss_dssp SEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECG
T ss_pred CeeehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHhHHHHHHHHHHhCCCcCHHHHHHcCCccEeeCH
Confidence 99999999999999999999999999999999999888889999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhccCHHHHHhhC
Q 030339 154 GQAQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 154 ~~~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+++.+++.++|++++++||.+++.+|
T Consensus 198 ~~l~~~a~~~a~~la~~~~~a~~~~K 223 (275)
T 4eml_A 198 DRLEEEGIQWAKEILSKSPLAIRCLK 223 (275)
T ss_dssp GGHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999887
|
| >3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-46 Score=293.62 Aligned_cols=179 Identities=25% Similarity=0.437 Sum_probs=157.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccccc-C--chhHHHHHHHHHHHHHHHhcCCCcEEEEEccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQM-S--PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 77 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~ 77 (179)
|+.+|.+++++++.|+++|+|||||.|++.||+|.|+.++.. . .+........+..++..+.++||||||+|||+|+
T Consensus 56 ~~~~L~~al~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~ 135 (289)
T 3t89_A 56 TVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSI 135 (289)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCCC----------------CTHHHHHHHHHHCSSCEEEEECSEEE
T ss_pred HHHHHHHHHHHHHhCCCceEEEEEcCCCCCccCCCChhhhhccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEECCEee
Confidence 578999999999999999999999995469999999998721 1 1111112223567888999999999999999999
Q ss_pred chhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHH
Q 030339 78 GGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 157 (179)
Q Consensus 78 g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~ 157 (179)
|||++|+++||+||++++++|++||+++|++|+++++++|++++|..++++++++|++++|+||+++||||+|++++++.
T Consensus 136 GgG~~lalacD~ria~~~a~f~~pe~~~Gl~~~~~g~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~ 215 (289)
T 3t89_A 136 GGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPLADLE 215 (289)
T ss_dssp THHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHH
T ss_pred hHHHHHHHhCCEEEEeCCCEEeccccccCCCCCchHHHHHHHhcCHHHHHHHHHcCCcccHHHHHHCCCceEeeCHHHHH
Confidence 99999999999999999999999999999888777899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCHHHHHhhC
Q 030339 158 LKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 158 ~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+++.+++++++++||.+++.+|
T Consensus 216 ~~a~~~A~~la~~~~~a~~~~K 237 (289)
T 3t89_A 216 KETVRWCREMLQNSPMALRCLK 237 (289)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999887
|
| >2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-46 Score=291.49 Aligned_cols=178 Identities=30% Similarity=0.483 Sum_probs=159.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-cc---Cchh-HHHHHHHHHHH-HHHHhcCCCcEEEEEcc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QM---SPSE-IHFYVNTLRST-FSFLEALPIPTIAVIDG 74 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~---~~~~-~~~~~~~~~~~-~~~~~~~~kp~ia~v~G 74 (179)
|+.+|.+++++++.|+++|+|||||. |+.||+|.|++++ .. .... ...+......+ +..+.++||||||+|||
T Consensus 37 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 115 (276)
T 2j5i_A 37 LNREMIDVLETLEQDPAAGVLVLTGA-GEAWTAGMDLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNG 115 (276)
T ss_dssp HHHHHHHHHHHHHTCTTEEEEEEEES-TTCSBCCBCHHHHHHHHHHSCTTHHHHHHHHHHHHHTTTTTTCSSCEEEEECS
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCCCcCCcChhhHhhccccchhHHHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 67899999999999999999999999 7999999999886 11 1111 12222223333 66788999999999999
Q ss_pred cccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCC
Q 030339 75 AALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG 154 (179)
Q Consensus 75 ~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~ 154 (179)
+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+|+|++
T Consensus 116 ~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~ 195 (276)
T 2j5i_A 116 WCFGGGFSPLVACDLAICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLMYIMTGKTFGGQKAAEMGLVNESVPLA 195 (276)
T ss_dssp CEEGGGHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHSCHHHHHHHHHHCCEEEHHHHHHHTSSSEEECHH
T ss_pred eeehhHHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHHhCHHHHHHHHHhCCcccHHHHHHcCCccEeeCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhccCHHHHHhhC
Q 030339 155 QAQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 155 ~~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
++.+++.+++++++++||.+++.+|
T Consensus 196 ~l~~~a~~~a~~la~~~p~a~~~~K 220 (276)
T 2j5i_A 196 QLREVTIELARNLLEKNPVVLRAAK 220 (276)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999999999876
|
| >1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-46 Score=288.41 Aligned_cols=177 Identities=33% Similarity=0.518 Sum_probs=160.8
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-cc---CchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 76 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a 76 (179)
|+.+|.+++++++.|+++|+|||||. |+.||+|.|++++ .. ...........+++++.++.++||||||+|||+|
T Consensus 27 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a 105 (253)
T 1uiy_A 27 MALSLLQALDDLEADPGVRAVVLTGR-GKAFSAGADLAFLERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPA 105 (253)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEES-SSCSBCCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSCE
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCCcccCcChHHHHhcccCCchhHHHHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence 57899999999999999999999998 6999999999887 22 2111111111267788899999999999999999
Q ss_pred cchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChH
Q 030339 77 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 156 (179)
Q Consensus 77 ~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~ 156 (179)
+|||++|+++||+||++++++|++||+++|++|++| +++|++++|..++++++++|++++|+||+++||||+|++++++
T Consensus 106 ~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g-~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l 184 (253)
T 1uiy_A 106 VAGGAGLALACDLVVMDEEARLGYTEVKIGFVAALV-SVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRIAPPGKA 184 (253)
T ss_dssp ETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCHHH-HHHHHHHSCHHHHHHHHHHCCEEEHHHHHHHTSCSEEECTTCH
T ss_pred eHHHHHHHHhCCEEEEcCCcEEeCcccccCcCCchH-HHHHHHHhCHHHHHHHHHhCCccCHHHHHHCCCcceecChhHH
Confidence 999999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCHHHHHhhC
Q 030339 157 QLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 157 ~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
.+++.+++++++++||.+++.+|
T Consensus 185 ~~~a~~~a~~la~~~~~a~~~~K 207 (253)
T 1uiy_A 185 LEEAKALAEEVAKNAPTSLRLTK 207 (253)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999998876
|
| >3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-46 Score=297.33 Aligned_cols=178 Identities=28% Similarity=0.405 Sum_probs=153.2
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccccc----Cch-----hHHHHHHHHHHHHHHHhcCCCcEEEE
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQM----SPS-----EIHFYVNTLRSTFSFLEALPIPTIAV 71 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~----~~~-----~~~~~~~~~~~~~~~~~~~~kp~ia~ 71 (179)
|+.+|.+++++++.|+++|+|||||. |+.||+|.|+.++.. ... ....+....+.++..+.++||||||+
T Consensus 58 ~~~~L~~al~~~~~d~~vr~vVltg~-G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 136 (298)
T 3qre_A 58 LAAGFYAAIDRAEADPGIRVIVLTGR-GRGFCAGAYLGSADAAAGYDKTMAKAKDANLADLVGERPPHFVTMLRKPVIAA 136 (298)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEES-TTCSEECC-----------------------------CCTTGGGGSSSCEEEE
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCCcccCcCHHHHhhccccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 57899999999999999999999999 699999999998732 111 11222233455677889999999999
Q ss_pred EcccccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCcccccc
Q 030339 72 IDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYV 151 (179)
Q Consensus 72 v~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~ 151 (179)
|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+|+
T Consensus 137 V~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~ellltg~~i~A~eA~~~GLV~~vv 216 (298)
T 3qre_A 137 INGPCVGIGLTQALMCDVRFAAAGAKFAAVFARRGLIAEFGISWILPRLTSWAVALDLLLSGRTFLAEEAAQLGLVKEVV 216 (298)
T ss_dssp ECSCEETHHHHHHHHSSEEEEETTCEEECCCCHHHHHCTTSHHHHHHHHSCHHHHHHHHHHCCEEEHHHHHHTTSCSEEE
T ss_pred ECCceeecchHHHhhCCEEEEcCCCEEECcccccCCCcchhHHHHHHHhcCHHHHHHHHHcCCCCCHHHHHHcCCCeEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhcc-CHHHHHhhC
Q 030339 152 PAGQAQLKALEIAQEINQK-VQSVFRILL 179 (179)
Q Consensus 152 ~~~~~~~~a~~~a~~~~~~-~~~a~~~~K 179 (179)
|++++.+++.++|++++++ ||.+++.+|
T Consensus 217 ~~~~l~~~a~~~A~~la~~~~p~a~~~~K 245 (298)
T 3qre_A 217 TPEQLMPRALEYAEDIARYCSPSSMAVIK 245 (298)
T ss_dssp CGGGHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 9999999999999999998 999999877
|
| >1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-45 Score=289.47 Aligned_cols=179 Identities=46% Similarity=0.779 Sum_probs=163.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+.+|.+++++++.|+++++|||||.+++.||+|.|+.++ .........+...+++++.++.++||||||+|||+|+||
T Consensus 40 ~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg 119 (272)
T 1hzd_A 40 LIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGG 119 (272)
T ss_dssp HHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEEEEESEEEETH
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCCCChhhhhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEeCceEEec
Confidence 5789999999999999999999999855899999999987 323333444556677889999999999999999999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChH---
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA--- 156 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~--- 156 (179)
|++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+|++++++
T Consensus 120 G~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~ 199 (272)
T 1hzd_A 120 GLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQEGDA 199 (272)
T ss_dssp HHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHTCEEEHHHHHHHTSCSEEECCCTTSCH
T ss_pred HHHHHHhCCEEEEcCCCEEeCchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCcceecChhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998774
Q ss_pred -HHHHHHHHHHHhccCHHHHHhhC
Q 030339 157 -QLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 157 -~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
.+++.+++++++++||.+++.+|
T Consensus 200 ~~~~a~~~a~~la~~~p~a~~~~K 223 (272)
T 1hzd_A 200 AYRKALDLAREFLPQGPVAMRVAK 223 (272)
T ss_dssp HHHHHHHHHHTTTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 55788999999999999998876
|
| >1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-45 Score=286.09 Aligned_cols=177 Identities=21% Similarity=0.361 Sum_probs=162.5
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccc-cCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+.+|.+++++++.|+++|+|||||. |+.||+|.|++++. .+.+....+...+++++.++.++|||+||+|||+|+|
T Consensus 44 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G- 121 (257)
T 1szo_A 44 AHDELAYCFHDIACDRENKVVILTGT-GPSFCNEIDFTSFNLGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNGPVTN- 121 (257)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEECB-TTBSBCEECGGGSCCSSHHHHHHHHHHHHHHHHHHHHCCSCEEEEECSCBCS-
T ss_pred HHHHHHHHHHHHHhCCCceEEEEEcC-CCccccCcCchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCchHH-
Confidence 57899999999999999999999998 68999999999883 2222223344456678889999999999999999994
Q ss_pred hHHHHhhcCEEEEcCCceeec-ccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHH
Q 030339 80 GLEMALACDLRICGEAALLGL-PETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 158 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~-p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~ 158 (179)
|++|+++||+||++++++|++ ||+++|++|++++++++++++|..++++++++|++++|+||+++||||+|+|++++.+
T Consensus 122 G~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~l~r~vG~~~A~~llltG~~~~A~eA~~~GLv~~vv~~~~l~~ 201 (257)
T 1szo_A 122 APEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELDARTALDYGAVNEVLSEQELLP 201 (257)
T ss_dssp STHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHCHHHHHHHHHTTCEEEHHHHHHHTSCSEEECHHHHHH
T ss_pred HHHHHHHCCEEEEeCCCEEecCcccccccCCCccHHHHHHHHcCHHHHHHHHHcCCCCCHHHHHHCCCceEEeChHHHHH
Confidence 899999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030339 159 KALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 159 ~a~~~a~~~~~~~~~a~~~~K 179 (179)
++.+++++++++||.+++.+|
T Consensus 202 ~a~~~a~~la~~~~~a~~~~K 222 (257)
T 1szo_A 202 RAWELARGIAEKPLLARRYAR 222 (257)
T ss_dssp HHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999876
|
| >3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-46 Score=295.77 Aligned_cols=179 Identities=28% Similarity=0.411 Sum_probs=161.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccccc-CchhHH---HHHHHHHHHHHHHhcCCCcEEEEEcccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQM-SPSEIH---FYVNTLRSTFSFLEALPIPTIAVIDGAA 76 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~kp~ia~v~G~a 76 (179)
|+.+|.+++++++.|+++|+|||||.|+++||+|.|+.++.. ...... .+...+++++.++.++||||||+|||+|
T Consensus 35 ~~~~L~~al~~~~~d~~vr~vVltg~G~~ff~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a 114 (289)
T 3h0u_A 35 VVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKVPEYTAEAAKAGGPGDASLGMLFRKLSQLPAVTIAKLRGRA 114 (289)
T ss_dssp HHHHHHHHHHHTTSTTSCSEEEEEECSSSEEECSBCTTCHHHHHHHHHTTSSTTCCSHHHHHHHHHTCSSEEEEEECSEE
T ss_pred HHHHHHHHHHHHhcCCCceEEEEECCCCCceeCCcCHHHHhhcCcchhhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEe
Confidence 678999999999999999999999995566777889998721 111110 2234567788999999999999999999
Q ss_pred cchhHHHHhhcCEEEEcCC-ceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCCh
Q 030339 77 LGGGLEMALACDLRICGEA-ALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 155 (179)
Q Consensus 77 ~g~G~~l~~~~D~~va~~~-a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~ 155 (179)
+|||++|+++||+||++++ ++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+|+|+++
T Consensus 115 ~GgG~~LalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~ 194 (289)
T 3h0u_A 115 RGAGSEFLLACDMRFASRENAILGQPEVGIGAPPGAGAIQHLTRLLGRGRALEAVLTSSDFDADLAERYGWVNRAVPDAE 194 (289)
T ss_dssp ETHHHHHHHHSSEEEEETTTCEEECTHHHHTSCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEEECHHH
T ss_pred ehhhHHHHHhCCEEEEeCCCcEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEecCHHH
Confidence 9999999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCHHHHHhhC
Q 030339 156 AQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 156 ~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+.+++.++++++++.||.+++.+|
T Consensus 195 l~~~a~~lA~~la~~~p~a~~~~K 218 (289)
T 3h0u_A 195 LDEFVAGIAARMSGFPRDALIAAK 218 (289)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999999887
|
| >2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-45 Score=287.13 Aligned_cols=177 Identities=23% Similarity=0.383 Sum_probs=161.8
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccccc----C-chhHHHHHHHHHHHHHHHhcCCCcEEEEEccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQM----S-PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGA 75 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~ 75 (179)
|+.+|.+++++++.|+. ++|||||. |+.||+|.|++++.. . ......+...++.++..+.++||||||+|||+
T Consensus 34 ~~~~L~~al~~~~~d~~-r~vvltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 111 (261)
T 2gtr_A 34 VMREVQSALSTAAADDS-KLVLLSAV-GSVFCCGLDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGP 111 (261)
T ss_dssp HHHHHHHHHHHHHHSSC-SCEEEEES-SSCSBCEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCEEEEECSC
T ss_pred HHHHHHHHHHHHhcCCC-EEEEEecC-CCccccccCchhhhhccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCe
Confidence 67899999999999975 99999998 799999999988721 1 11223444556778889999999999999999
Q ss_pred ccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCCh
Q 030339 76 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 155 (179)
Q Consensus 76 a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~ 155 (179)
|+|||++|+++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++|+||+++||||+|+++++
T Consensus 112 a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~ 191 (261)
T 2gtr_A 112 AIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPGT 191 (261)
T ss_dssp EETHHHHTGGGSSEEEEETTCEEECCTTTTTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECGGG
T ss_pred EeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCccchHHHHHHHHcCHHHHHHHHHcCCCCCHHHHHHCCCcccccChhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCHHHHHhhC
Q 030339 156 AQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 156 ~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+.+++.++++++++.||.+++.+|
T Consensus 192 l~~~a~~~a~~la~~~p~a~~~~K 215 (261)
T 2gtr_A 192 FTQEVMVRIKELASCNPVVLEESK 215 (261)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999998876
|
| >3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-45 Score=296.13 Aligned_cols=179 Identities=24% Similarity=0.395 Sum_probs=159.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCC------ccccccCccccccC-c-----------hhHHHHHHHHHHHHHHHh
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPK------VFCAGADLKVLQMS-P-----------SEIHFYVNTLRSTFSFLE 62 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~------~F~~G~D~~~~~~~-~-----------~~~~~~~~~~~~~~~~~~ 62 (179)
|+.+|.++|++++.|+++|+|||||.|++ .||+|.|++++... . +........+..+++.+.
T Consensus 85 ~~~eL~~al~~~~~d~~vrvVVltG~G~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 164 (334)
T 3t8b_A 85 TVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIR 164 (334)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCSCTTTTC----------------------CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCceEEEEeCCCCCcCCCCCcccCCCCHHHhhcccccccccccchhhhHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999544 89999999876211 0 001111223456788899
Q ss_pred cCCCcEEEEEcccccchhHHHHhhcCEEEEc-CCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHH
Q 030339 63 ALPIPTIAVIDGAALGGGLEMALACDLRICG-EAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 141 (179)
Q Consensus 63 ~~~kp~ia~v~G~a~g~G~~l~~~~D~~va~-~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a 141 (179)
++||||||+|||+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|..++++++++|++++|+||
T Consensus 165 ~~~kPvIAaV~G~A~GgG~~LalacD~riAs~~~A~f~~pe~~lGl~p~~gg~~~L~r~vG~~~A~ellltG~~i~A~eA 244 (334)
T 3t8b_A 165 FMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYTAEQM 244 (334)
T ss_dssp HSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCCTTCSSSSCCSCHHHHHHHHHHHHHHHHHHHCCEEEHHHH
T ss_pred hCCCCEEEEECCccccCcchhHhhCCEEEEeCCCcEEECcccccCCCCcccHHHHHHHHhhHHHHHHHHHhCCcCCHHHH
Confidence 9999999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HhcCccccccCCChHHHHHHHHHHHHhccCHHHHHhhC
Q 030339 142 MSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 142 ~~~Glv~~v~~~~~~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+++||||+|++++++.+++.++|++|+++||.+++++|
T Consensus 245 ~~~GLV~~vv~~~~l~~~a~~~A~~ia~~~p~a~~~~K 282 (334)
T 3t8b_A 245 HQMGAVNAVAEHAELETVGLQWAAEINAKSPQAQRMLK 282 (334)
T ss_dssp HHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHCCCCcEecCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999999999887
|
| >3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-46 Score=292.48 Aligned_cols=176 Identities=39% Similarity=0.517 Sum_probs=157.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccc-cCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+.+|.+++++++.|+++|+|||||. |+.||+|.|++++. ........ .....+...+.++||||||+|||+|+||
T Consensus 39 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~--~~~~~~~~~~~~~~kPvIAav~G~a~Gg 115 (262)
T 3r9q_A 39 TAAALLAAFTEFDADPEASVAVLWGD-NGTFCAGADLKAMGTDRGNELHP--HGPGPMGPSRLRLSKPVIAAISGHAVAG 115 (262)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEES-TTCSBCCBCTTTTTSTTSCCCCT--TSSCTTSSTTCCCSSCEEEEECSEEETH
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCCccCCcCHHHHhccChhhHHH--hhhhHHHHHHHhCCCCEEEEECCeeehh
Confidence 67899999999999999999999999 69999999999882 11111000 0112234456799999999999999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
|++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+|+|++++.++
T Consensus 116 G~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~ 195 (262)
T 3r9q_A 116 GIELALWCDLRVVEEDAVLGVFCRRWGVPLIDGGTIRLPRLIGHSRAMDLILTGRPVHANEALDIGLVNRVVARGQAREA 195 (262)
T ss_dssp HHHHHHHSSEEEEETTCEEECTHHHHTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECTTCHHHH
T ss_pred hhHHHHhCCEEEEeCCCEEecchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCccEecChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030339 160 ALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 160 a~~~a~~~~~~~~~a~~~~K 179 (179)
+.++++++++.||.+++.+|
T Consensus 196 a~~~a~~la~~~~~a~~~~K 215 (262)
T 3r9q_A 196 AETLAAEIAAFPQQCVRADR 215 (262)
T ss_dssp HHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999887
|
| >2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-45 Score=290.91 Aligned_cols=177 Identities=21% Similarity=0.396 Sum_probs=162.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccccc----C-chhHHHHHHHHHHHHHHHhcCCCcEEEEEccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQM----S-PSEIHFYVNTLRSTFSFLEALPIPTIAVIDGA 75 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~ 75 (179)
|+.+|.++|++++.|+. |+|||||. |+.||+|.|+.++.. . ......+...++.++..+.++||||||+|||+
T Consensus 52 m~~~L~~al~~~~~d~~-r~vVltg~-G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~ 129 (291)
T 2fbm_A 52 VIKEIVNALNSAAADDS-KLVLFSAA-GSVFCCGLDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGP 129 (291)
T ss_dssp HHHHHHHHHHHHHHSSC-SEEEEEEC-SSCSBCCBCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCEEEEECSC
T ss_pred HHHHHHHHHHHHhcCCC-eEEEEECC-CCCccCCcCHHHHHhcccccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCe
Confidence 67899999999999975 99999999 799999999988721 1 11223344556778889999999999999999
Q ss_pred ccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCCh
Q 030339 76 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 155 (179)
Q Consensus 76 a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~ 155 (179)
|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+|+++++
T Consensus 130 a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~el~ltg~~i~A~eA~~~GLV~~vv~~~~ 209 (291)
T 2fbm_A 130 AIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGT 209 (291)
T ss_dssp EETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHTSCCEEEHHHHHHTTSCSEEECSTT
T ss_pred eecHHHHHHHhCCEEEEeCCCEEECcHHhcCCCCcccHHHHHHHHHhHHHHHHHHHcCCccCHHHHHHCCCcceecChhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCHHHHHhhC
Q 030339 156 AQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 156 ~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+.+++.++++++++.||.+++.+|
T Consensus 210 l~~~a~~~a~~la~~~p~a~~~~K 233 (291)
T 2fbm_A 210 FTQEVMIQIKELASYNPIVLEECK 233 (291)
T ss_dssp SHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999999876
|
| >3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-46 Score=288.35 Aligned_cols=170 Identities=32% Similarity=0.476 Sum_probs=155.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchh
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G 80 (179)
|+.+|.+++++++.|+++|+|||||. ++.||+|.|+.++... ..++.+...+.++||||||+|||+|+|||
T Consensus 37 ~~~~L~~al~~~~~d~~vr~vvltg~-g~~F~aG~Dl~~~~~~--------~~~~~~~~~l~~~~kPvIAav~G~a~GgG 107 (256)
T 3pe8_A 37 LRSTFFRALSDAQNDDDVDVVIVTGA-DPVFCAGLDLKELGDT--------TELPDISPKWPDMTKPVIGAINGAAVTGG 107 (256)
T ss_dssp HHHHHHHHHHHHHHCTTCSEEEEEES-TTCSBCCBCTTTC-----------------CCCCCCCSSCEEEEECSEEETHH
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEECC-CCCccCCcCHHHHhhh--------HHHHHHHHHHHhCCCCEEEEECCeeechH
Confidence 67899999999999999999999999 7899999999987221 12234456788999999999999999999
Q ss_pred HHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHHH
Q 030339 81 LEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKA 160 (179)
Q Consensus 81 ~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~a 160 (179)
++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+|+|++++.+++
T Consensus 108 ~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a 187 (256)
T 3pe8_A 108 LELALYCDILIASENAKFADTHARVGLMPTWGLSVRLPQKVGVGLARRMSLTGDYLSAQDALRAGLVTEVVAHDDLLTAA 187 (256)
T ss_dssp HHHHHHSSEEEEETTCEEECCHHHHTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSCEECGGGHHHHH
T ss_pred HHHHHhCCEEEEcCCCEEECchhhhCCCCcccHHHHHHHhcCHHHHHHHHHcCCCCCHHHHHHCCCCeEEeCHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCHHHHHhhC
Q 030339 161 LEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 161 ~~~a~~~~~~~~~a~~~~K 179 (179)
.++++++++.||.+++.+|
T Consensus 188 ~~~a~~la~~~~~a~~~~K 206 (256)
T 3pe8_A 188 RRVAASIVGNNQKAVRALL 206 (256)
T ss_dssp HHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999876
|
| >3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-45 Score=287.56 Aligned_cols=176 Identities=31% Similarity=0.422 Sum_probs=154.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHH-HHHHH-h--cCCCcEEEEEcccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRS-TFSFL-E--ALPIPTIAVIDGAA 76 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~-~~~~~-~--~~~kp~ia~v~G~a 76 (179)
|+.+|.+++++++.|+++|+|||||. |+.||+|.|+. .. .......+...... ++..+ . ++||||||+|||+|
T Consensus 37 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~-~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~kPvIAav~G~a 113 (265)
T 3rsi_A 37 MVSQFAAAWDEIDHDDGIRAAILTGA-GSAYCVGGDLS-DG-WMVRDGSAPPLDPATIGKGLLLSHTLTKPLIAAVNGAC 113 (265)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEES-TTCSEECC----------------CCCHHHHHHHTTSSCCCSSCEEEEECSCE
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCCcccCcCCC-cc-cccchHHHHHHhHHHHHHHHHHhcCCCCCEEEEECCee
Confidence 57899999999999999999999999 68999999998 31 11111122223345 78888 8 99999999999999
Q ss_pred cchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChH
Q 030339 77 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 156 (179)
Q Consensus 77 ~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~ 156 (179)
+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+|+|++++
T Consensus 114 ~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l 193 (265)
T 3rsi_A 114 LGGGCEMLQQTDIRVSDEHATFGLPEVQRGLVPGAGSMVRLKRQIPYTKAMEMILTGEPLTAFEAYHFGLVGHVVPAGTA 193 (265)
T ss_dssp ETHHHHHHTTCSEEEEETTCEEECGGGGGTCCCTTTHHHHHHHHSCHHHHHHHHHHCCCEEHHHHHHTTSCSEEESTTCH
T ss_pred eHHHHHHHHHCCEEEecCCCEEECchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEecChhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCHHHHHhhC
Q 030339 157 QLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 157 ~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
.+++.++++++++.||.+++.+|
T Consensus 194 ~~~a~~~a~~la~~~~~a~~~~K 216 (265)
T 3rsi_A 194 LDKARSLADRIVRNGPLAVRNAK 216 (265)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999887
|
| >1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-46 Score=289.40 Aligned_cols=177 Identities=24% Similarity=0.445 Sum_probs=159.8
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEe-CCCCccccccCcccc-ccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRS-SVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 78 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g-~~~~~F~~G~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g 78 (179)
|+.+|.+++++++.|+ +|+||||| .+++.||+|.|+.++ ...... ..+...+++++.++.++||||||+|||+|+|
T Consensus 32 ~~~~L~~al~~~~~d~-vr~vVltg~~g~~~F~aG~Dl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 109 (261)
T 1ef8_A 32 FIDDLMQALSDLNRPE-IRCIILRAPSGSKVFSAGHDIHELPSGGRDP-LSYDDPLRQITRMIQKFPKPIISMVEGSVWG 109 (261)
T ss_dssp HHHHHHHHHHHTCSTT-CCEEEEECCTTCSEEECCSCSTTC-----CT-TCTTSHHHHHHHHHHHCSSCEEEEECSEEET
T ss_pred HHHHHHHHHHHHhhCC-ceEEEEECCCCCCeeecCcChHhhhccCchh-HHHHHHHHHHHHHHHhCCCCEEEEECCEEEe
Confidence 5789999999999999 99999999 844999999999987 211111 1112235678889999999999999999999
Q ss_pred hhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHH
Q 030339 79 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 158 (179)
Q Consensus 79 ~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~ 158 (179)
||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+|++++++.+
T Consensus 110 gG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~ 189 (261)
T 1ef8_A 110 GAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPITAQRALAVGILNHVVEVEELED 189 (261)
T ss_dssp HHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSSCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECHHHHHH
T ss_pred HhHHHHHhCCEEEecCCCEEeCchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCcccccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030339 159 KALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 159 ~a~~~a~~~~~~~~~a~~~~K 179 (179)
++.+++++++++||.+++.+|
T Consensus 190 ~a~~~a~~la~~~~~a~~~~K 210 (261)
T 1ef8_A 190 FTLQMAHHISEKAPLAIAVIK 210 (261)
T ss_dssp HHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999998876
|
| >4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-46 Score=291.86 Aligned_cols=178 Identities=31% Similarity=0.494 Sum_probs=149.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccc-cCchhHHHHHHHHHHHHHHHh---cCCCcEEEEEcccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MSPSEIHFYVNTLRSTFSFLE---ALPIPTIAVIDGAA 76 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~kp~ia~v~G~a 76 (179)
|+.+|.+++++++.|+++|+|||||. ++.||+|.|++++. ...............++..+. ++||||||+|||+|
T Consensus 48 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~kPvIAav~G~a 126 (278)
T 4f47_A 48 MMQIMVEAWDRVDNDPDIRCCILTGA-GGYFCAGMDLKAATKKPPGDSFKDGSYDPSRIDALLKGRRLKKPLIAAVEGPA 126 (278)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEES-TTCCC----------------------CTTCBTTTTBSCCCSSCEEEEECSEE
T ss_pred HHHHHHHHHHHHhcCCCeeEEEEECC-CCcccCCcChHhhhccchhhhHHHHHHHHHHHHHHHHhcCCCCCEEEEECCEE
Confidence 67899999999999999999999999 68999999999882 221111111112234455666 99999999999999
Q ss_pred cchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChH
Q 030339 77 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 156 (179)
Q Consensus 77 ~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~ 156 (179)
+|||++|+++||+||++++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+|++++++
T Consensus 127 ~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l 206 (278)
T 4f47_A 127 IAGGTEILQGTDIRVAAESAKFGISEAKWSLYPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEMGLVGHVVPDGQA 206 (278)
T ss_dssp ETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCTTSHHHHHHHHSCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECTTCH
T ss_pred ehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCceEeeChhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCHHHHHhhC
Q 030339 157 QLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 157 ~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
.+++.++++++++++|.+++.+|
T Consensus 207 ~~~a~~~a~~la~~~~~a~~~~K 229 (278)
T 4f47_A 207 LTKALEIAEIIAANGPLAVQAIL 229 (278)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999876
|
| >2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-45 Score=286.58 Aligned_cols=177 Identities=25% Similarity=0.340 Sum_probs=162.8
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccccc--CchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQM--SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 78 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g 78 (179)
|+.+|.+++++++.|+++|+|||||. |+.||+|.|++++.. +.+....+...++.++.++.++||||||+|||+|+
T Consensus 52 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~- 129 (263)
T 2j5g_A 52 THREFPDAFYDISRDRDNRVVILTGS-GDAWMAEIDFPSLGDVTNPREWDKTYWEGKKVLQNLLDIEVPVISAVNGAAL- 129 (263)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEECB-TTEEECEECSGGGCCTTSHHHHHHHHHHHHHHHHHHHTCCSCEEEEECSEEC-
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEECC-CCCcccCcCHHHHhccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCcch-
Confidence 57899999999999999999999998 799999999998832 22223334455677888999999999999999999
Q ss_pred hhHHHHhhcCEEEEcCCceeec-ccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHH
Q 030339 79 GGLEMALACDLRICGEAALLGL-PETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 157 (179)
Q Consensus 79 ~G~~l~~~~D~~va~~~a~~~~-p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~ 157 (179)
||++|+++||+||++++++|++ ||+++|++|++|+++++++++|.+++++++++|++++|+||+++||||+|+|++++.
T Consensus 130 GG~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~llltG~~~~A~eA~~~GLv~~vv~~~~l~ 209 (263)
T 2j5g_A 130 LHSEYILTTDIILASENTVFQDMPHLNAGIVPGDGVHILWPLALGLYRGRYFLFTQEKLTAQQAYELNVVHEVLPQSKLM 209 (263)
T ss_dssp SCGGGGGGCSEEEEETTCEECCCHHHHHTCCCCSSHHHHHHHHHHHHHHHHHHHTTCCEEHHHHHHTTSCSEEECGGGHH
T ss_pred HHHHHHHhCCEEEEcCCCEEecCcccccccCCCccHHHHHHHHcCHHHHHHHHHcCCCCCHHHHHHCCCccEecChHHHH
Confidence 5899999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCHHHHHhhC
Q 030339 158 LKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 158 ~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+++.+++++++++||.+++.+|
T Consensus 210 ~~a~~~a~~la~~~~~a~~~~K 231 (263)
T 2j5g_A 210 ERAWEIARTLAKQPTLNLRYTR 231 (263)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999999877
|
| >3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-46 Score=294.83 Aligned_cols=178 Identities=26% Similarity=0.338 Sum_probs=158.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCchhHHHHHHHHHHHHHHH-hcCCCcEEEEEcccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFSFL-EALPIPTIAVIDGAALG 78 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~kp~ia~v~G~a~g 78 (179)
|+.+|.+++++++.|+++|+|||||. ++.||+|.|+.++ .........+.....+++.++ .++|||+||+|||+|+|
T Consensus 37 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~kPvIAav~G~a~G 115 (265)
T 3swx_A 37 MLEELALALGEYETDTDLRAAVLYGE-GPLFTAGLDLASVAAEIQGGASLTPEGGINPWQVDGRQLSKPLLVAVHGKVLT 115 (265)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEES-TTCSBCCBCHHHHHHHHC--CCCCCTTCCCTTCCSSCCCSSCEEEEECSEEET
T ss_pred HHHHHHHHHHHHhhCCCceEEEEECC-CCCcccCcChHHHhhcccchhHHHHHHHHHHHHHHHHhCCCCEEEEEcCeeeh
Confidence 67899999999999999999999999 6779999999887 111100001111223345667 89999999999999999
Q ss_pred hhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHH
Q 030339 79 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 158 (179)
Q Consensus 79 ~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~ 158 (179)
||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+|++++++.+
T Consensus 116 gG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~ 195 (265)
T 3swx_A 116 LGIELALAADIVIADETATFAQLEVNRGIYPFGGATIRFPRTAGWGNAMRWMLTADTFDAVEAHRIGIVQEIVPVGEHVD 195 (265)
T ss_dssp HHHHHHHHSSEEEEETTCEEECGGGGGTSCCCSSHHHHHHHHHCHHHHHHHHTTCCCEEHHHHHHTTSCSEEESTTCHHH
T ss_pred HHHHHHHHCCEEEEcCCCEEECcccccccCCCccHHHHHHHHhhHHHHHHHHHcCCcCCHHHHHHcCCCCEecChhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030339 159 KALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 159 ~a~~~a~~~~~~~~~a~~~~K 179 (179)
++.+++++++++||.+++.+|
T Consensus 196 ~a~~~a~~la~~~p~a~~~~K 216 (265)
T 3swx_A 196 TAIAIAQTIARQAPLGVQATL 216 (265)
T ss_dssp HHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999887
|
| >3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-44 Score=283.76 Aligned_cols=175 Identities=23% Similarity=0.371 Sum_probs=157.2
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccc--cCchh----HHHHHHHHHHHHHHHhcCCCcEEEEEcc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ--MSPSE----IHFYVNTLRSTFSFLEALPIPTIAVIDG 74 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~kp~ia~v~G 74 (179)
|+.+|.+++++++.|+++|+|||||. ++.||+|.|++++. ..... ...+.+.++.++.++.++||||||+|||
T Consensus 39 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 117 (267)
T 3oc7_A 39 LVSQLHQGLRDASSDPAVRVVVLAHT-GGTFCAGADLSEAGSGGSPSSAYDMAVERAREMAALMRAIVESRLPVIAAIDG 117 (267)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEEC-SSEEECCBC-----------CHHHHHHHHHHHHHHHHHHHHHCSSCEEEEECS
T ss_pred HHHHHHHHHHHHhcCCCceEEEEECC-CCceeCCcCchhhhhccCchhhhhhHHHHHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 57899999999999999999999999 68999999999873 12222 1245677788999999999999999999
Q ss_pred cccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCC
Q 030339 75 AALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG 154 (179)
Q Consensus 75 ~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~ 154 (179)
+|+|+|++|+++||+||++++++|++||+++|++|+++++++++ ++|..++++++++|++++|+||+++||||+| ++
T Consensus 118 ~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~-~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~v--~~ 194 (267)
T 3oc7_A 118 HVRAGGFGLVGACDIAVAGPRSSFALTEARIGVAPAIISLTLLP-KLSARAAARYYLTGEKFDARRAEEIGLITMA--AE 194 (267)
T ss_dssp EEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTTHHHHTT-TSCHHHHHHHHHHCCCBCHHHHHHHTSSSEE--CS
T ss_pred eecccchHHHHHCCEEEEcCCCEEeCcccccCCCcchhHHHHHH-HhCHHHHHHHHHcCCccCHHHHHHCCChhhh--hH
Confidence 99999999999999999999999999999999999999999999 9999999999999999999999999999999 78
Q ss_pred hHHHHHHHHHHHHhccCHHHHHhhC
Q 030339 155 QAQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 155 ~~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
++.+++.+++++++++||.+++.+|
T Consensus 195 ~l~~~a~~~a~~la~~~~~a~~~~K 219 (267)
T 3oc7_A 195 DLDAAIDQLVTDVGRGSPQGLAASK 219 (267)
T ss_dssp SHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999999999887
|
| >1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-45 Score=287.75 Aligned_cols=177 Identities=36% Similarity=0.610 Sum_probs=159.3
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchh
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G 80 (179)
|+.+|.+++++++.|+++|+|||||. |+.||+|.|++++..... .......+...+.++.++||||||+|||+|+|||
T Consensus 35 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~-~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG 112 (260)
T 1mj3_A 35 LIEELNQALETFEEDPAVGAIVLTGG-EKAFAAGADIKEMQNRTF-QDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGG 112 (260)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEECC-SSEEECCBCHHHHTTCCH-HHHHHC--CCGGGGGGGCSSCEEEEECSEEETHH
T ss_pred HHHHHHHHHHHHHhCCCeeEEEEECC-CCCccCCcChHhhhcccc-hHHHHHHHHHHHHHHHhCCCCEEEEECCEEEeHH
Confidence 67899999999999999999999998 799999999988732111 1112222333466788999999999999999999
Q ss_pred HHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHHH
Q 030339 81 LEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKA 160 (179)
Q Consensus 81 ~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~a 160 (179)
++|+++||+||++++++|++||+++|++|+++++++|++++|..++++++++|++++|+||+++||||+|++++++.+++
T Consensus 113 ~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a 192 (260)
T 1mj3_A 113 CELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEA 192 (260)
T ss_dssp HHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECTTTHHHHH
T ss_pred HHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCccEEeChHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCHHHHHhhC
Q 030339 161 LEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 161 ~~~a~~~~~~~~~a~~~~K 179 (179)
.+++++++++||.+++.+|
T Consensus 193 ~~~a~~la~~~~~a~~~~K 211 (260)
T 1mj3_A 193 IQCAEKIANNSKIIVAMAK 211 (260)
T ss_dssp HHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 9999999999999998876
|
| >3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-46 Score=294.52 Aligned_cols=177 Identities=28% Similarity=0.479 Sum_probs=160.5
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+.+|.+++++++.|+++|+|||||. ++.||+|.|+.++ ............. +.++.++.++||||||+|||+|+||
T Consensus 35 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~-~~~~~~l~~~~kPvIAav~G~a~Gg 112 (265)
T 3qxz_A 35 LGRQLGAAYQRLDDDPAVRVIVLTGA-PPAFCSGAQISAAAETFAAPRNPDFSA-SPVQPAAFELRTPVIAAVNGHAIGI 112 (265)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEES-TTEEECCBCSTTCTTCCCCCCSSCCCS-CCSSSCGGGSSSCEEEEECSEEETH
T ss_pred HHHHHHHHHHHHhhCCCceEEEEECC-CCccccCcChHHHhhccchhHHHHHHH-HHHHHHHHhCCCCEEEEECCEEehH
Confidence 67899999999999999999999999 6999999999988 2211111111122 4567788999999999999999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
|++|+++||+||++++++|++||+++|++|+++++++|++++|..++++++++|++++|+||+++||||+|+|++++.++
T Consensus 113 G~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~ 192 (265)
T 3qxz_A 113 GMTLALHADIRILAEEGRYAIPQVRFGVAPDALAHWTLPRLVGTAVAAELLLTGASFSAQRAVETGLANRCLPAGKVLGA 192 (265)
T ss_dssp HHHHHTTSSEEEEETTCCEECCGGGGTSCCCTTHHHHTHHHHHHHHHHHHHHHCCCBCHHHHHHHTSCSEEECHHHHHHH
T ss_pred hHHHHHHCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCccEeeCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcc-CHHHHHhhC
Q 030339 160 ALEIAQEINQK-VQSVFRILL 179 (179)
Q Consensus 160 a~~~a~~~~~~-~~~a~~~~K 179 (179)
+.+++++++++ ||.+++.+|
T Consensus 193 a~~~a~~la~~~~p~a~~~~K 213 (265)
T 3qxz_A 193 ALRMAHDIATNVAPESAALTK 213 (265)
T ss_dssp HHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHH
Confidence 99999999999 999999876
|
| >4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=293.50 Aligned_cols=163 Identities=23% Similarity=0.470 Sum_probs=150.5
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc----ccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL----QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 76 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a 76 (179)
|+.+|.+++++++.|+++|+|||||.|+++||+|.|+.++ ..+......+....+.++..+.++|||+||+|||+|
T Consensus 37 m~~~l~~al~~~~~d~~vr~vvltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a 116 (353)
T 4hdt_A 37 MVTTMAERLAAWENDDSVRAVLLTGAGERGLCAGGDVVAIYHSAKADGAEARRFWFDEYRLNAHIGRYPKPYVSIMDGIV 116 (353)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEEEEESSSSBSBCCBCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHCSSCEEEEECBEE
T ss_pred HHHHHHHHHHHHHhCCCceEEEEEeCCCCCEecCcCHHHHhhccchhhHHHHHHHHHHHHHHHHHHHCCCCEEEEeECce
Confidence 6889999999999999999999999966899999999987 234455666777778899999999999999999999
Q ss_pred cchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChH
Q 030339 77 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 156 (179)
Q Consensus 77 ~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~ 156 (179)
+|||++|+++||+||++++++|++||+++|++|++|++++++++.| .++++++++|++++|+||+++||||+|||++++
T Consensus 117 ~GgG~~lal~cD~ria~~~a~f~~pe~~iGl~p~~g~~~~l~rl~g-~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l 195 (353)
T 4hdt_A 117 MGGGVGVGAHGNVRVVTDTTKMAMPEVGIGFIPDVGGTYLLSRAPG-KLGLHAALTGAPFSGADAIVMGFADHYVPHDKI 195 (353)
T ss_dssp ETHHHHHHTTSSEEEECTTCEEECCGGGGTCCCCTTHHHHHHTSST-THHHHHHHHCCCBCHHHHHHHTSCSEECCGGGH
T ss_pred eecCccccCCcCeeccchhccccCcccccccCCCccceehhhhhhh-HHHHHHHhcCCCCCHHHHHHcCCCcEEeCHHHH
Confidence 9999999999999999999999999999999999999999999888 689999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 030339 157 QLKALEIA 164 (179)
Q Consensus 157 ~~~a~~~a 164 (179)
.+++++++
T Consensus 196 ~~~a~~la 203 (353)
T 4hdt_A 196 DEFTRAVI 203 (353)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877663
|
| >3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-46 Score=292.90 Aligned_cols=177 Identities=20% Similarity=0.350 Sum_probs=155.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccc-cCc-------hhHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-MSP-------SEIHFYVNTLRSTFSFLEALPIPTIAVI 72 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~kp~ia~v 72 (179)
|+.+|.+++++++.|+++|+|||||. |+.||+|.|+.++. ... .........++.++.++.++||||||+|
T Consensus 39 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 117 (274)
T 3tlf_A 39 MITELRAAYHEAENDDRVWLLVVTGT-GRAFCSGADVKEIPEDGKVIYERPYLSTYDQWEAPQEGTPPFRTMAKPVLTAV 117 (274)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEES-TTEEECCBC--------------CTTCSGGGGSCCCTTCCCTTSCCSCEEEEE
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEeCC-CCCcccCcCHHHHhhccccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 67899999999999999999999999 69999999999882 111 1111112234556778899999999999
Q ss_pred cccccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCC--CcCHHHHHhcCccccc
Q 030339 73 DGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGR--KVSGKDAMSLGLVNYY 150 (179)
Q Consensus 73 ~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~--~~~a~~a~~~Glv~~v 150 (179)
||+|+|||++|+++||+||++++++|++||+++|++| ++++++|++++|..++++++++|+ +++|+||+++||||+|
T Consensus 118 ~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p-~g~~~~L~r~vG~~~A~~l~ltg~~~~~~A~eA~~~GLv~~v 196 (274)
T 3tlf_A 118 NGICCGAGMDWVTTTDIVIASEQATFFDPHVSIGLVA-GRELVRVSRVLPRSIALRMALMGKHERMSAQRAYELGLISEI 196 (274)
T ss_dssp CSEEEGGGHHHHHHSSEEEEETTCEEECCGGGGTCCC-CHHHHHHTTTSCHHHHHHHHHHGGGCCEEHHHHHHHTSSSEE
T ss_pred CCeeehHHHHHHHhCCEEEEcCCCEEECcccccCccc-chHHHHHHHHhCHHHHHHHHHcCCCCccCHHHHHHCCCCCee
Confidence 9999999999999999999999999999999999999 999999999999999999999999 9999999999999999
Q ss_pred cCCChHHHHHHHHHHHHhccCHHHHHhhC
Q 030339 151 VPAGQAQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 151 ~~~~~~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
++++++.+++.+++++++++||.+++.+|
T Consensus 197 v~~~~l~~~a~~~a~~la~~~~~a~~~~K 225 (274)
T 3tlf_A 197 VEHDRLLERAHEIADIVNSNAPLAVRGTR 225 (274)
T ss_dssp ECGGGHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999887
|
| >2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-45 Score=288.76 Aligned_cols=178 Identities=24% Similarity=0.446 Sum_probs=157.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCC-ccccccCccccccCc-hhHHHH-HHHHHHHHHHHhcCCCcEEEEEccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPK-VFCAGADLKVLQMSP-SEIHFY-VNTLRSTFSFLEALPIPTIAVIDGAAL 77 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~-~F~~G~D~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~kp~ia~v~G~a~ 77 (179)
|+.+|.+++++++.|+++|+|||||. ++ .||+|.|++++.... ...... ...++.++..+.++|||+||+|||+|+
T Consensus 41 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~ 119 (273)
T 2uzf_A 41 TVAEMIDAFSRARDDQNVSVIVLTGE-GDLAFCSGGDQKKRGHGGYVGEDQIPRLNVLDLQRLIRIIPKPVIAMVKGYAV 119 (273)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEES-SSEEEECCCCCC--------CCSSSCCCTHHHHHHHHHHSSSCEEEEECEEEE
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEecC-CCCceecCcCcHhhhccccchhhhHHHhhHHHHHHHHHhCCCCEEEEECCEEe
Confidence 57899999999999999999999999 56 999999999872110 000000 001346677888999999999999999
Q ss_pred chhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHH
Q 030339 78 GGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 157 (179)
Q Consensus 78 g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~ 157 (179)
|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+|++++++.
T Consensus 120 GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~ 199 (273)
T 2uzf_A 120 GGGNVLNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQEALDMGLVNTVVPLEKVE 199 (273)
T ss_dssp THHHHHHHHSSEEEEETTCEEECCGGGTTCCCCSTTTHHHHHHHCHHHHHHHHHTCCCEEHHHHHHHTSSSEEECGGGSH
T ss_pred ehhHHHHHhCCEEEEcCCCEEECchhhhCCCCchhHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCccccCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCHHHHHhhC
Q 030339 158 LKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 158 ~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+++.+++++++++||.+++.+|
T Consensus 200 ~~a~~~a~~la~~~~~a~~~~K 221 (273)
T 2uzf_A 200 DETVQWCKEIMKHSPTALRFLK 221 (273)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999998876
|
| >3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-44 Score=279.96 Aligned_cols=174 Identities=18% Similarity=0.301 Sum_probs=159.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+.+|.++++.++. +++|+|||||. |+.||+|.|+.++ .............++.++.++.++|||+||+|||+|+||
T Consensus 35 ~~~~L~~al~~~~~-~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg 112 (254)
T 3isa_A 35 LVEALIDGVDAAHR-EQVPLLVFAGA-GRNFSAGFDFTDYETQSEGDLLLRMVRIEMLLQRVAGSPSLTLALAHGRNFGA 112 (254)
T ss_dssp HHHHHHHHHHHHHH-TTCSEEEEEES-TTCSCCCBCCTTCTTSCHHHHHHHHHHHHHHHHHHHTCSSEEEEEECSEEETH
T ss_pred HHHHHHHHHHHhhc-CCcEEEEEECC-CCceeeCcChHHhhccCchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeEeec
Confidence 57899999999987 59999999999 7999999999998 333333334445667889999999999999999999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
|++|+++||+||++++++|++||+++|++| ++++|++++|..++++++++|++++|+||+++||||+|+|++++.++
T Consensus 113 G~~lalacD~ria~~~a~f~~pe~~~Gl~p---g~~~l~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~ 189 (254)
T 3isa_A 113 GVDLFAACKWRYCTPEAGFRMPGLKFGLVL---GTRRFRDIVGADQALSILGSARAFDADEARRIGFVRDCAAQAQWPAL 189 (254)
T ss_dssp HHHHHHHSSEEEECTTCEEECCGGGGTCCC---SHHHHHHHHCHHHHHHHHTTTCEEEHHHHHHTTSSSEECCGGGHHHH
T ss_pred chhHHHhCCEEEEcCCCEEECchhccCccH---HHHHHHHHcCHHHHHHHHHhCCCCcHHHHHHCCCccEEeChhHHHHH
Confidence 999999999999999999999999999998 47899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030339 160 ALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 160 a~~~a~~~~~~~~~a~~~~K 179 (179)
+.++++++++.||.+++.+|
T Consensus 190 a~~~a~~la~~~~~a~~~~K 209 (254)
T 3isa_A 190 IDAAAEAATALDPATRATLH 209 (254)
T ss_dssp HHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999876
|
| >3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-44 Score=287.41 Aligned_cols=177 Identities=24% Similarity=0.433 Sum_probs=157.4
Q ss_pred CHHHHHHHHHHhhc-----CCCceEEEEEeCCCCccccccCcccc-cc----CchhHHHHHHHHHHHHHHH---hcCCCc
Q 030339 1 MLRGLKHAFETISE-----DSSANVVMIRSSVPKVFCAGADLKVL-QM----SPSEIHFYVNTLRSTFSFL---EALPIP 67 (179)
Q Consensus 1 m~~~l~~~l~~~~~-----d~~v~~vvl~g~~~~~F~~G~D~~~~-~~----~~~~~~~~~~~~~~~~~~~---~~~~kp 67 (179)
|+.+|.++|++++. |+++|+|||+|. |+.||+|.|+.++ .. .......+...+...+..+ .++|||
T Consensus 64 m~~eL~~al~~~~~d~~~~d~~vr~vVltg~-G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~kP 142 (305)
T 3m6n_A 64 LVDDITGYQTNLGQRLNTAGVLAPHVVLASD-SDVFNLGGDLALFCQLIREGDRARLLDYAQRCVRGVHAFHVGLGARAH 142 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSCEEEEEES-SSSSBCCBCHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTGGGTTCE
T ss_pred HHHHHHHHHHHHHhcccccCCCeEEEEEECC-CCCeecCcCHHHHHhccccccHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 67899999999987 589999999998 8999999999987 21 2223333444444455444 468999
Q ss_pred EEEEEcccccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCcc
Q 030339 68 TIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLV 147 (179)
Q Consensus 68 ~ia~v~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv 147 (179)
|||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++|||
T Consensus 143 vIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLv 222 (305)
T 3m6n_A 143 SIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDLFPGMGAYSFMCQRISAHLAQKIMLEGNLYSAEQLLGMGLV 222 (305)
T ss_dssp EEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHTTTSCHHHHHHHHHHCCEEEHHHHHHHTSC
T ss_pred EEEEECCEeehHHHHHHHhCCEEEEcCCCEEECchhccCcCCCccHHHHHHHHhcHHHHHHHHHcCCCCCHHHHHHCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCChHHHHHHHHHHHHhccCHHHHHhhC
Q 030339 148 NYYVPAGQAQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 148 ~~v~~~~~~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
|+|++++++.+++.++++++++ +|.+++.+|
T Consensus 223 ~~vv~~~~l~~~a~~~a~~la~-~p~a~~~~K 253 (305)
T 3m6n_A 223 DRVVPRGQGVAAVEQVIRESKR-TPHAWAAMQ 253 (305)
T ss_dssp SEEECTTCHHHHHHHHHHHHTT-CHHHHHHHH
T ss_pred CEecChhHHHHHHHHHHHHHhh-ChHHHHHHH
Confidence 9999999999999999999997 788888776
|
| >1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-44 Score=285.90 Aligned_cols=178 Identities=18% Similarity=0.203 Sum_probs=159.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-cc---Cc----hhHHHH----HHHHHHHHHHHhcCCCcE
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QM---SP----SEIHFY----VNTLRSTFSFLEALPIPT 68 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~---~~----~~~~~~----~~~~~~~~~~~~~~~kp~ 68 (179)
|+.+|.+++++++.|+++|+|||||. |+.||+|.|+.++ .. .. .....+ ....+.++..+.++||||
T Consensus 37 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv 115 (280)
T 1pjh_A 37 DYIYLGELLELADRNRDVYFTIIQSS-GRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVL 115 (280)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEECB-TTBSBCCBCHHHHHC-------CCSSHHHHHHHHTHHHHHHHHHHHHHCCSEE
T ss_pred HHHHHHHHHHHHhcCCCceEEEEECC-CCCccCCcCHHHHhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHhCCCCE
Confidence 57899999999999999999999998 7999999999987 21 11 111112 223357788999999999
Q ss_pred EEEEcccccchhHHHHhhcCEEEEc-CCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCcc
Q 030339 69 IAVIDGAALGGGLEMALACDLRICG-EAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLV 147 (179)
Q Consensus 69 ia~v~G~a~g~G~~l~~~~D~~va~-~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv 147 (179)
||+|||+|+|||++|+++||+||++ ++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++|||
T Consensus 116 IAav~G~a~GgG~~LalacD~~ia~~~~a~f~~pe~~lGl~p~~g~~~~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv 195 (280)
T 1pjh_A 116 ICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDIMCENGFI 195 (280)
T ss_dssp EEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHHTTCCEEHHHHHHTTCC
T ss_pred EEEECCeeeeHHHHHHHHCCEEEEeCCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHCCCc
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCC-----hHHHHHH-HHHHHHhccCHHHHHhhC
Q 030339 148 NYYVPAG-----QAQLKAL-EIAQEINQKVQSVFRILL 179 (179)
Q Consensus 148 ~~v~~~~-----~~~~~a~-~~a~~~~~~~~~a~~~~K 179 (179)
|+|++++ ++.+++. +++++++++||.+++.+|
T Consensus 196 ~~vv~~~~~~~~~l~~~a~~~~a~~la~~~~~a~~~~K 233 (280)
T 1pjh_A 196 SKNFNMPSSNAEAFNAKVLEELREKVKGLYLPSCLGMK 233 (280)
T ss_dssp SEECCCCTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred ceeeCCccccHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999875 7888885 999999999999999877
|
| >3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-45 Score=289.54 Aligned_cols=178 Identities=32% Similarity=0.436 Sum_probs=155.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+.+|.+++++++.|+++|+|||||.+++.||+|.|++++ .................+ ...++|||+||+|||+|+||
T Consensus 37 ~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~kPvIAav~G~a~Gg 115 (267)
T 3r9t_A 37 VSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIARRENLYHPDHPEWGFAGY-VRHFIDKPTIAAVNGTALGG 115 (267)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCHHHHHTTCCCSCTTCGGGCGGGT-TTCCCSSCEEEEECSEECTH
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECCCCCceeCCcChHHHhcccchhhHHHHhHHHHHH-HHHhCCCCEEEEECCEEEhH
Confidence 6789999999999999999999999955799999999987 211111000000000111 12389999999999999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
|++|+++||+||++++++|++||+++|++|+++++++|++++|..++++++++|++++|+||+++||||+|+|++++.++
T Consensus 116 G~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~ 195 (267)
T 3r9t_A 116 GTELALASDLVVADERAQFGLPEVKRGLIAAAGGVFRIAEQLPRKVAMRLLLTGEPLSAAAARDWGLINEVVEAGSVLDA 195 (267)
T ss_dssp HHHHHHHSSEEEEETTCEECCGGGGTTCCCTTTHHHHHHHHSCHHHHHHHHHHCCCEEHHHHHHHTSSSEEECTTCHHHH
T ss_pred HHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHcCHHHHHHHHHcCCCCCHHHHHHCCCccEEcChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030339 160 ALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 160 a~~~a~~~~~~~~~a~~~~K 179 (179)
+.+++++++++||.+++.+|
T Consensus 196 a~~~a~~la~~~p~a~~~~K 215 (267)
T 3r9t_A 196 ALALASAITVNAPLSVQASK 215 (267)
T ss_dssp HHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHhCChHHHHHHH
Confidence 99999999999999999887
|
| >2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-46 Score=286.58 Aligned_cols=173 Identities=21% Similarity=0.366 Sum_probs=158.8
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccccc-CchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQM-SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+.+|.+++++++.|+++|+|||||. |+.||+|.|++++.. ..... ..++++.++.++|||+||+|||+|+||
T Consensus 31 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~-----~~~~~~~~l~~~~kPvIAav~G~a~Gg 104 (243)
T 2q35_A 31 IVEGLRHCFSVVAQNQQYKVVILTGY-GNYFSSGASKEFLIRKTRGEV-----EVLDLSGLILDCEIPIIAAMQGHSFGG 104 (243)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEECB-TTEEECBSCHHHHHHHHTTCC-----CCCCCHHHHHTCCSCEEEEECSEEETH
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCCeeCCCChHHHhhccchhh-----HHHHHHHHHHhCCCCEEEEEcCccccc
Confidence 67899999999999999999999998 799999999987611 00000 124567789999999999999999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
|++|+++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++|+||+++||||+|++++++.++
T Consensus 105 G~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~ 184 (243)
T 2q35_A 105 GLLLGLYADFVVFSQESVYATNFMKYGFTPVGATSLILREKLGSELAQEMIYTGENYRGKELAERGIPFPVVSRQDVLNY 184 (243)
T ss_dssp HHHHHHTSSEEEEESSSEEECCHHHHTSCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTCSSCEECHHHHHHH
T ss_pred hHHHHHhCCEEEEeCCCEEECCccccCCCCcchHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCCCEecChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030339 160 ALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 160 a~~~a~~~~~~~~~a~~~~K 179 (179)
+.++++++++.||.+++.+|
T Consensus 185 a~~~a~~la~~~~~a~~~~K 204 (243)
T 2q35_A 185 AQQLGQKIAKSPRLSLVALK 204 (243)
T ss_dssp HHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999998876
|
| >3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-44 Score=288.49 Aligned_cols=175 Identities=23% Similarity=0.320 Sum_probs=154.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCch------------------------------hHHH
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPS------------------------------EIHF 49 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~~------------------------------~~~~ 49 (179)
|+.+|.++|++++.|+++|+|||||. |+.||+|.|+.++ ..... ....
T Consensus 63 m~~eL~~al~~~~~d~~vrvvVltG~-G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (333)
T 3njd_A 63 TPLELSALVERADLDPDVHVILVSGR-GEGFCAGFDLSAYAEGSSSAGGGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQ 141 (333)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEES-TTSSBCCBC---------------CCTTSTTCHHHHHHTTCSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEECC-CCceecCcCHHHHhhcccccccccccccccccccccccccccccccchhhHHH
Confidence 67899999999999999999999999 7999999999987 21110 1224
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEcccccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHH
Q 030339 50 YVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDI 129 (179)
Q Consensus 50 ~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l 129 (179)
+...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++ ++++++|..+++++
T Consensus 142 ~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~rias~~a~f~~pe~~lG~~P~~g---~l~~~vG~~~A~el 218 (333)
T 3njd_A 142 MMSRFVRGFASLMHCDKPTVVKIHGYCVAGGTDIALHADQVIAAADAKIGYPPMRVWGVPAAG---LWAHRLGDQRAKRL 218 (333)
T ss_dssp HHHHHHHHHTHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEECTTCEEECGGGGTTCCCTTC---CHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCEEeHHHHHHHHhCCEEEECCCCeeechhhceeccCHHH---HHHHHHHHHHHHHH
Confidence 456667788899999999999999999999999999999999999999999999999999875 57889999999999
Q ss_pred HhcCCCcCHHHHHhcCccccccCCChHHHHHHHHHHHHhccCHHHHHhhC
Q 030339 130 IFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 130 ~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+++|++++|+||+++||||+|++++++.+++.++|++|+++||.+++.+|
T Consensus 219 lltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~ia~~~~~al~~~K 268 (333)
T 3njd_A 219 LFTGDCITGAQAAEWGLAVEAPDPADLDARTERLVERIAAMPVNQLIMAK 268 (333)
T ss_dssp HTTCCEEEHHHHHHTTSSSBCCCGGGHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HhcCCCCCHHHHHHCCCccEecChHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887
|
| >3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-44 Score=280.84 Aligned_cols=176 Identities=27% Similarity=0.361 Sum_probs=153.8
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccccc-C-c-h---hHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQM-S-P-S---EIHFYVNTLRSTFSFLEALPIPTIAVIDG 74 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~-~-~-~---~~~~~~~~~~~~~~~~~~~~kp~ia~v~G 74 (179)
|+.+|.+++++++.|+++|+|||+|. |+.||+|.|+.++.. . . . ........+.+++.++.++|||+||+|||
T Consensus 48 ~~~~L~~al~~~~~d~~vr~vVltg~-G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 126 (279)
T 3t3w_A 48 LLDELDAAWTRAAEDNDVSVIVLRAN-GKHFSAGHDLRGGGPVPDKLTLEFIYAHESRRYLEYSLRWRNVPKPSIAAVQG 126 (279)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEEC-SSCSBCCBCCC--------CCHHHHHHHHHHHTHHHHHHHHHCSSCEEEEECS
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEECC-CCceeeccChHhhhhcccccchHHHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 57899999999999999999999999 699999999998821 1 1 1 11222345567788999999999999999
Q ss_pred cccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCC
Q 030339 75 AALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG 154 (179)
Q Consensus 75 ~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~ 154 (179)
+|+|||++|+++||+||++++++|++||+++|++|. ++.. +++++|..++++++++|++++|+||+++||||+|+|++
T Consensus 127 ~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~~~-~~~~-~~~~vG~~~A~~llltG~~i~A~eA~~~GLv~~vv~~~ 204 (279)
T 3t3w_A 127 RCISGGLLLCWPCDLIIAAEDALFSDPVVLMDIGGV-EYHG-HTWELGPRKAKEILFTGRAMTAEEVAQTGMVNRVVPRD 204 (279)
T ss_dssp EEEGGGHHHHTTSSEEEEETTCEEECCGGGGTCSSC-SSCC-HHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGG
T ss_pred eEhHHHHHHHHhCCEEEecCCCEEeCcHHhcCCCCc-hHHH-HHhhcCHHHHHHHHHcCCccCHHHHHHCCCCcEeeChH
Confidence 999999999999999999999999999999999544 3433 38899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhccCHHHHHhhC
Q 030339 155 QAQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 155 ~~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
++.+++.++++++++.||.+++.+|
T Consensus 205 ~l~~~a~~~a~~la~~~~~a~~~~K 229 (279)
T 3t3w_A 205 RLDAETRALAGEIAKMPPFALRQAK 229 (279)
T ss_dssp GHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999887
|
| >3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-44 Score=283.10 Aligned_cols=172 Identities=30% Similarity=0.483 Sum_probs=150.2
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCchhHHHHHHHHHHH-HHHHhcCCCcEEEEEcccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRST-FSFLEALPIPTIAVIDGAALG 78 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~kp~ia~v~G~a~g 78 (179)
|+.+|.+++++++.|+++|+|||||. ++.||+|.|+.++ ......... +.+ +..+.. |||+||+|||+|+|
T Consensus 43 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~-----~~~~~~~~~~-~kPvIAav~G~a~G 115 (265)
T 3qxi_A 43 VSRALADAMDRLDADAGLSVGILTGA-GGSFCAGMDLKAFARGENVVVEG-----RGLGFTERPP-AKPLIAAVEGYALA 115 (265)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEES-TTCCCCSBC-------CCCEETT-----TEETTTTSCC-SSCEEEEECSEEET
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEECC-CCCeeCCCChhhhhccchhhhhh-----hhhhHHHhhC-CCCEEEEECCceeH
Confidence 67899999999999999999999999 6899999999987 211110000 011 233344 99999999999999
Q ss_pred hhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHH
Q 030339 79 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 158 (179)
Q Consensus 79 ~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~ 158 (179)
+|++|+++||+||++++++|++||+++|++|+++++++|++++|..++++++++|++++|+||+++||||+|+|++++.+
T Consensus 116 gG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~ 195 (265)
T 3qxi_A 116 GGTELALATDLIVAARDSAFGIPEVKRGLVAGGGGLLRLPERIPYAIAMELALTGDNLSAERAHALGMVNVLAEPGAALD 195 (265)
T ss_dssp HHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHSCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECTTCHHH
T ss_pred HHHHHHHhCCEEEEcCCCEEECcccccCcCCcccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCccEeeChhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030339 159 KALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 159 ~a~~~a~~~~~~~~~a~~~~K 179 (179)
++.+++++++++||.+++.+|
T Consensus 196 ~a~~~a~~la~~~p~a~~~~K 216 (265)
T 3qxi_A 196 AAIALAEKITANGPLAVAATK 216 (265)
T ss_dssp HHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999876
|
| >3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-44 Score=280.13 Aligned_cols=174 Identities=20% Similarity=0.286 Sum_probs=154.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-cc--CchhHHHHHHHHHHHHHHHhcCCCcEEEEEccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QM--SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 77 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~ 77 (179)
|+.+|.+++++++.| ++|+|||||. |+.||+|.|++++ .. ...........++.++.++.++||||||+|||+|+
T Consensus 35 ~~~~L~~al~~~~~d-~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~ 112 (267)
T 3hp0_A 35 LIEECLQVLNQCETS-TVTVVVLEGL-PEVFCFGADFQEIYQEMKRGRKQASSQEPLYDLWMKLQTGPYVTISHVRGKVN 112 (267)
T ss_dssp HHHHHHHHHHHHHHS-SCCEEEEECC-SSCSBCCBCHHHHHHTTTTTCCSCCCCHHHHHHHHHHHHSSSEEEEEECSEEE
T ss_pred HHHHHHHHHHHHhcC-CCEEEEEECC-CCceecCcCHHHHHhcccChHHHHHHHHHHHHHHHHHHcCCCCEEEEECCEEe
Confidence 578999999999986 6999999998 7999999999987 21 11122223345667888999999999999999999
Q ss_pred chhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHH
Q 030339 78 GGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 157 (179)
Q Consensus 78 g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~ 157 (179)
|||++|+++||+||++++++|++||+++|++|+++ +++|++++|..++++++++|++++|+||+++||||+|+++.+
T Consensus 113 GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g-~~~l~r~vG~~~A~ellltg~~i~A~eA~~~GLV~~vv~~~~-- 189 (267)
T 3hp0_A 113 AGGLGFVSATDIAIADQTASFSLSELLFGLYPACV-LPFLIRRIGRQKAHYMTLMTKPISVQEASEWGLIDAFDAESD-- 189 (267)
T ss_dssp TTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTT-HHHHHHHHCHHHHHHHHHHCCCBCHHHHHHHTSSSCBCSCTT--
T ss_pred ehHHHHHHhCCEEEEcCCCEEECchhccCcCchhH-HHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCcceecCCHH--
Confidence 99999999999999999999999999999999875 678999999999999999999999999999999999998644
Q ss_pred HHHHHHHHHHhccCHHHHHhhC
Q 030339 158 LKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 158 ~~a~~~a~~~~~~~~~a~~~~K 179 (179)
..+.+++++++++||.+++.+|
T Consensus 190 ~~~~~~a~~la~~~p~a~~~~K 211 (267)
T 3hp0_A 190 VLLRKHLLRLRRLNKKGIAHYK 211 (267)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHH
Confidence 3578899999999999999887
|
| >3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-44 Score=281.83 Aligned_cols=172 Identities=33% Similarity=0.519 Sum_probs=154.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+.+|.+++++++.|+++|+|||||. ++.||+|.|++++ ......... .+ . +..+ ++|||+||+|||+|+||
T Consensus 35 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~---~~-~-~~~~-~~~kPvIAav~G~a~Gg 107 (256)
T 3trr_A 35 VSQGLAAAADQLDSSADLSVAIITGA-GGNFCAGMDLKAFVSGEAVLSER---GL-G-FTNV-PPRKPIIAAVEGFALAG 107 (256)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEEG-GGCCCCCBCHHHHHHTCCCEETT---EE-T-TSSS-CCSSCEEEEECSBCCTH
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEECC-CCceecCcCHHHhccccchhhhh---hh-h-HHHh-cCCCCEEEEECCeeeec
Confidence 67899999999999999999999999 6899999999887 211110000 01 1 2234 89999999999999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
|++|+++||+||++++++|++||+++|++|+.+++++|++++|..++++++++|++++|+||+++||||+|+|++++.++
T Consensus 108 G~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~ 187 (256)
T 3trr_A 108 GTELVLSCDLVVAGRSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQVAMELALTGESFTAEDAAKYGFINRLVDDGQALDT 187 (256)
T ss_dssp HHHHHHTSSEEEEETTCEECCCGGGGTCCCCSSHHHHHHHHSCHHHHHHHHHHCCCEEHHHHGGGTCCSEEECTTCHHHH
T ss_pred hhHHHHhCCEEEECCCCEEEehhhccCCCCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHCCCeeEecChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030339 160 ALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 160 a~~~a~~~~~~~~~a~~~~K 179 (179)
+.+++++++++||.+++.+|
T Consensus 188 a~~~a~~la~~~~~a~~~~K 207 (256)
T 3trr_A 188 ALELAAKITANGPLAVAATK 207 (256)
T ss_dssp HHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999876
|
| >3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-44 Score=277.80 Aligned_cols=169 Identities=25% Similarity=0.438 Sum_probs=152.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchh
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G 80 (179)
|+.+|.+++++++.| ++|+|||||. |+.||+|.|+... .....+.+.+.+++.++.++||||||+|||+|+|||
T Consensus 49 ~~~~L~~al~~~~~d-~vr~vVltg~-G~~FcaG~Dl~~~----~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG 122 (264)
T 3he2_A 49 LVEELTQAIRKAGDG-SARAIVLTGQ-GTAFCAGADLSGD----AFAADYPDRLIELHKAMDASPMPVVGAINGPAIGAG 122 (264)
T ss_dssp HHHHHHHHHHCC----CCSEEEEEES-SSCSBCCBCCTTC----TTGGGHHHHHHHHHHHHHHCSSCEEEEECSCEETHH
T ss_pred HHHHHHHHHHHHhhC-CceEEEEECC-CCCccCCcCCccc----hhhHHHHHHHHHHHHHHHhCCCCEEEEECCcEEcch
Confidence 578999999999988 9999999999 6999999999742 112234456677889999999999999999999999
Q ss_pred HHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHHH
Q 030339 81 LEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKA 160 (179)
Q Consensus 81 ~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~a 160 (179)
++|+++||+||++++++|++||+++|++|+++++++|++++|..++++++++|++++|+||+++||||+|++ .+++
T Consensus 123 ~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLV~~v~~----~~~a 198 (264)
T 3he2_A 123 LQLAMQCDLRVVAPDAFFQFPTSKYGLALDNWSIRRLSSLVGHGRARAMLLSAEKLTAEIALHTGMANRIGT----LADA 198 (264)
T ss_dssp HHHHHHSSEEEECTTCEEECTHHHHTCCCCHHHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEECC----HHHH
T ss_pred hHHHHhCCEEEEcCCCEEECcccccCcCCcchHHHHHHHHhCHHHHHHHHHcCCCccHHHHHHCCCeEEEec----HHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999985 4689
Q ss_pred HHHHHHHhccCHHHHHhhC
Q 030339 161 LEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 161 ~~~a~~~~~~~~~a~~~~K 179 (179)
.+++++++++||.+++.+|
T Consensus 199 ~~~A~~la~~~p~a~~~~K 217 (264)
T 3he2_A 199 QAWAAEIARLAPLAIQHAK 217 (264)
T ss_dssp HHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999887
|
| >3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-43 Score=285.67 Aligned_cols=157 Identities=25% Similarity=0.517 Sum_probs=141.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-cc---CchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 76 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a 76 (179)
|+.+|.++|+.++.|+++|+|||||.|++.||+|.|+.++ .. .......+......++.++.++|||+||+|||+|
T Consensus 34 m~~~L~~al~~~~~d~~vr~vVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a 113 (363)
T 3bpt_A 34 MIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQKIAPVFFREEYMLNNAVGSCQKPYVALIHGIT 113 (363)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEETTSSEEECCBCHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTCSSCEEEEECSEE
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEECCCCCcccCCcCHHHHHhhcccccHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEE
Confidence 6789999999999999999999999955999999999887 21 1111233444456788899999999999999999
Q ss_pred cchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChH
Q 030339 77 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 156 (179)
Q Consensus 77 ~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~ 156 (179)
+|||++|+++||+||++++++|++||+++|++|++|++++|++++|. ++++++++|++++|+||+++||||+|++++++
T Consensus 114 ~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~-~a~~l~ltg~~i~A~eA~~~GLv~~vv~~~~l 192 (363)
T 3bpt_A 114 MGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGK-LGYFLALTGFRLKGRDVYRAGIATHFVDSEKL 192 (363)
T ss_dssp ETHHHHTTTTSSEEEECTTCEEECCGGGTTSCCCTTHHHHHHHSSTT-HHHHHHHHCCCEETHHHHHTTSCSEECCGGGH
T ss_pred ehHHHHHHHhCCEEEEcCCeEEeCCccccCCCCCchHHHHHHHhhHH-HHHHHHHcCCCCCHHHHHHCCCcceecCHHHH
Confidence 99999999999999999999999999999999999999999999997 99999999999999999999999999998887
Q ss_pred HH
Q 030339 157 QL 158 (179)
Q Consensus 157 ~~ 158 (179)
.+
T Consensus 193 ~~ 194 (363)
T 3bpt_A 193 AM 194 (363)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-42 Score=285.71 Aligned_cols=157 Identities=23% Similarity=0.408 Sum_probs=144.1
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccc-c-------CchhHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQ-M-------SPSEIHFYVNTLRSTFSFLEALPIPTIAVI 72 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v 72 (179)
|+.+|.++|++++.|+++|+|||||.|++.||+|.|+.++. . .......+....+.++.++.++|||+||+|
T Consensus 70 m~~~L~~al~~~~~d~~vr~vVltG~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAaV 149 (407)
T 3ju1_A 70 MVRAMTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHASVAAKGQVTEVAKVFFEEEYRLDYLLHTYGKPVLVWG 149 (407)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEEEESSSSEEECCBCCHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHTCSSCEEEEC
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEecCCCCcccCCCChhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 68899999999999999999999999558999999999872 1 123345566667788999999999999999
Q ss_pred cccccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccC
Q 030339 73 DGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVP 152 (179)
Q Consensus 73 ~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~ 152 (179)
||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++| .++++++++|++++|+||+++||||+|+|
T Consensus 150 nG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~G~t~~L~rl~g-~~A~~l~ltG~~i~A~eA~~~GLv~~vv~ 228 (407)
T 3ju1_A 150 DGIVMGGGLGLMAGASHKVVTETSRIAMPEVTIGLYPDVGGSYFLNRMPG-KMGLFLGLTAYHMNAADACYVGLADHYLN 228 (407)
T ss_dssp CSEEETHHHHHHHHCSEEEECTTCEEECGGGGGTCCSCTTHHHHTTTSST-THHHHHHHHCCCBCHHHHHHHTSCSEECC
T ss_pred CCccccCcchHHhcCCEEEEcCCCEEeChHhhcCCCCCchHHHHHhhhhH-HHHHHHHHcCCcCcHHHHHHCCCccEEcC
Confidence 99999999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred CChHHH
Q 030339 153 AGQAQL 158 (179)
Q Consensus 153 ~~~~~~ 158 (179)
++++.+
T Consensus 229 ~~~l~~ 234 (407)
T 3ju1_A 229 RDDKEL 234 (407)
T ss_dssp GGGHHH
T ss_pred HHHHHH
Confidence 988776
|
| >2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-42 Score=285.31 Aligned_cols=176 Identities=26% Similarity=0.336 Sum_probs=160.4
Q ss_pred CHHHHHHHHHHhhcC-CCceEEEEEeCCCCccccccCcccc-ccCchhHHHHHHHHHHHHHHH----hcCCCcEEEEEcc
Q 030339 1 MLRGLKHAFETISED-SSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFSFL----EALPIPTIAVIDG 74 (179)
Q Consensus 1 m~~~l~~~l~~~~~d-~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~kp~ia~v~G 74 (179)
|+.+|.+++++++.| +++|+|||||..|+.||+|.|+.++ .........+.+.+++++..+ .++|||+||+|||
T Consensus 59 ml~eL~~AL~~~~~D~~~VRaVVLTGa~G~~FcAGaDL~el~~~~~~~~~~~~~~~~~l~~~L~~a~~~~pKPVIAAVnG 138 (556)
T 2w3p_A 59 VDIELHDAIQRIRFEHPEVRTVVLTSLKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGLEDSSRHSGLKFLAAVNG 138 (556)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECEECHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECS
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEeCCCCCcccCCcCHHHHhhcccHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEECC
Confidence 578999999999999 9999999999338999999999988 322223334445667788888 9999999999999
Q ss_pred cccchhHHHHhhcCEEEEcCC--ceeeccccc-ccccCCcchhhhhh--cccCHHHHHHHHhcCCCcCHHHHHhcCcccc
Q 030339 75 AALGGGLEMALACDLRICGEA--ALLGLPETG-LAIIPGAGGTQRLP--RLVGKSVAKDIIFTGRKVSGKDAMSLGLVNY 149 (179)
Q Consensus 75 ~a~g~G~~l~~~~D~~va~~~--a~~~~p~~~-~G~~p~~~~~~~l~--~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~ 149 (179)
+|+|||++|+++||+||++++ ++|++||++ +|++|++|++++++ +++|..++++++++|++++|+||+++||||+
T Consensus 139 ~AlGGGleLALACD~rIAse~~~A~FglPEv~~LGL~Pg~Ggt~rLp~~RlVG~~rA~eLlLTGr~isA~EAl~lGLVde 218 (556)
T 2w3p_A 139 ACAGGGYELALACDEIYLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRKVRHDRADIFCTVVEGVRGERAKAWRLVDE 218 (556)
T ss_dssp EEETHHHHHHHHSSEEEEECSSSCEEECCHHHHHSSCCTTTHHHHHHHTSCCCHHHHHHHTTCSSCEEHHHHHHTTSCSE
T ss_pred eechhhHHHHHhCCEEEEcCCCCcEEecccccccCCCCCccHHHHHHhhccCCHHHHHHHHHcCCCCCHHHHHHCCCceE
Confidence 999999999999999999999 999999999 99999999999999 9999999999999999999999999999999
Q ss_pred ccCCChHHHHHHHHHHHHhccCHHHHH
Q 030339 150 YVPAGQAQLKALEIAQEINQKVQSVFR 176 (179)
Q Consensus 150 v~~~~~~~~~a~~~a~~~~~~~~~a~~ 176 (179)
|++++++.+++.+++++++++||.+++
T Consensus 219 VVp~~eL~~~A~~lA~~LA~~~p~Av~ 245 (556)
T 2w3p_A 219 VVKPNQFDQAIQARALELAAQSDRPAH 245 (556)
T ss_dssp EECHHHHHHHHHHHHHHHHTTCCCCTT
T ss_pred EeChhHHHHHHHHHHHHHHcCChHHHh
Confidence 999999999999999999999988765
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-40 Score=289.38 Aligned_cols=167 Identities=37% Similarity=0.622 Sum_probs=152.8
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+.+|.+++++++.|+++|+|||||. ++.||+|.|++++ ...+.. .+..+++++.+++|||||+|||+|+||
T Consensus 48 ~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aGaDl~~~~~~~~~~------~~~~~~~~i~~~~kPvIAai~G~a~GG 120 (742)
T 3zwc_A 48 VIREVRNGLQKAGSDHTVKAIVICGA-NGNFCAGADIHGFSAFTPGL------ALGSLVDEIQRYQKPVLAAIQGVALGG 120 (742)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEEEEES-TTCSBCCBCSSSCCSSCSCS------HHHHHHHHHHHCSSCEEEEECSEEETH
T ss_pred HHHHHHHHHHHHhhCCCCeEEEEECC-CCccccCcChHhhhccChhH------HHHHHHHHHHhCCCCEEEEECccchHH
Confidence 57899999999999999999999999 7999999999998 322221 245678889999999999999999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
|++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++|+++|++++|+||+++||||+|++++. .++
T Consensus 121 G~elalacD~ria~~~a~fg~pev~lGl~Pg~ggt~rL~rlvG~~~A~~l~ltG~~i~a~eA~~~GLv~~vv~~d~-~~~ 199 (742)
T 3zwc_A 121 GLELALGCHYRIANAKARVGLPEVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAVVKSDP-VEE 199 (742)
T ss_dssp HHHHHHTSSEEEEETTCEEECGGGGGTCCCTTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEESSCH-HHH
T ss_pred HHHHHHhcCEEEEcCCCEEECcccCcccCCCccHHHHHHHhhhHHHHHHHHHcCCchhHHHHHHcCCccEecCchh-hHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998754 578
Q ss_pred HHHHHHHHhccCHHHH
Q 030339 160 ALEIAQEINQKVQSVF 175 (179)
Q Consensus 160 a~~~a~~~~~~~~~a~ 175 (179)
+.++|+++++.++...
T Consensus 200 A~~~A~~ia~~~~~~~ 215 (742)
T 3zwc_A 200 AIKFAQKIIDKPIEPR 215 (742)
T ss_dssp HHHHHHHHTTSCSGGG
T ss_pred HHHHHHHHhcCCchhh
Confidence 9999999999887543
|
| >2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-40 Score=274.42 Aligned_cols=175 Identities=24% Similarity=0.358 Sum_probs=148.5
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeC--------CCCccccccCcccc-ccC--chh--HHHHHHHHHHHHHHH------
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSS--------VPKVFCAGADLKVL-QMS--PSE--IHFYVNTLRSTFSFL------ 61 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~--------~~~~F~~G~D~~~~-~~~--~~~--~~~~~~~~~~~~~~~------ 61 (179)
|+.+|.++|++++.|+++|+|||||. |++.||+|.|++++ ... ... .......++.++..+
T Consensus 195 m~~eL~~al~~~~~D~~VRvVVLtG~~~~~p~~aG~~~FcAG~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 274 (440)
T 2np9_A 195 QVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVFSAGINLKYLSQGGISLVDFLMRRELGYIHKLVRGVLTNDDR 274 (440)
T ss_dssp HHHHHHHHHHHHHHCTTCSEEEEEECBCCSTTTTTCBCCBCCBCHHHHHTTCCCTTTTHHHHHHTHHHHHHHCEECCSCS
T ss_pred HHHHHHHHHHHHHhCCCceEEEEEcCCccccccCCCccccCCcchhhhhccCcchhhhhhHHHHHHHHHHHHHHHhhccc
Confidence 67899999999999999999999994 34899999999987 211 111 111122234455544
Q ss_pred ------hcCCCcEEEEEcccccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCC
Q 030339 62 ------EALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRK 135 (179)
Q Consensus 62 ------~~~~kp~ia~v~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~ 135 (179)
.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++ +++|++++|..++++++++|++
T Consensus 275 ~~~~~~~~~pkPvIAAVnG~A~GGG~eLALaCDirIAae~A~Fglpev~lGl~P~~g-~~~L~rlvG~~~A~ellLtG~~ 353 (440)
T 2np9_A 275 PGWWHSPRIEKPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKEGIIPGAA-NLRLGRFAGPRVSRQVILEGRR 353 (440)
T ss_dssp TTTTTCCEECCCEEEEECSEEETHHHHHGGGCSEEEEETTCEEECCCTTTCCCCTTH-HHHHHHHHHHHHHHHHHHHCCC
T ss_pred chhhhhhcCCCCEEEEECCcccccchHHHhhCCEEEEcCCCEEECchhccCcCcchH-HHHHHHHhhHHHHHHHHHcCCC
Confidence 479999999999999999999999999999999999999999999999887 6899999999999999999999
Q ss_pred cCHHHHHhcCccccccCCChHHHHHHHHHHHHhccCHHHHHhhC
Q 030339 136 VSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 136 ~~a~~a~~~Glv~~v~~~~~~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
++++||+++||||+|++++++.+++.+++++++. .+++.+|
T Consensus 354 i~A~EA~~~GLV~~Vvp~~eL~~~a~~~A~~la~---~Av~~~K 394 (440)
T 2np9_A 354 IWAKEPEARLLVDEVVEPDELDAAIERSLTRLDG---DAVLANR 394 (440)
T ss_dssp EETTSGGGGGTCSEEECHHHHHHHHHHHHHTTCS---HHHHHHH
T ss_pred CCHHHHHHCCCCcEecChHHHHHHHHHHHHHhCH---HHHHHHH
Confidence 9999999999999999999999999999888754 4555554
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-39 Score=281.33 Aligned_cols=169 Identities=37% Similarity=0.568 Sum_probs=155.6
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-cc---CchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QM---SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 76 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a 76 (179)
|+.+|.+++++++.|+++|+||||| +++.||+|.|++++ .. ..+....+...++++++++.++||||||+|||+|
T Consensus 36 ~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a 114 (715)
T 1wdk_A 36 TLNELRQAVDAIKADASVKGVIVSS-GKDVFIVGADITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIA 114 (715)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEE-SSSSSBBCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEEEEECSCE
T ss_pred HHHHHHHHHHHHHhCCCceEEEEEC-CCCeEeCCcCHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEe
Confidence 5789999999999999999999999 55699999999988 21 2223344556678889999999999999999999
Q ss_pred cchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChH
Q 030339 77 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 156 (179)
Q Consensus 77 ~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~ 156 (179)
+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+|++++++
T Consensus 115 ~GgG~elalacD~ria~~~a~fglpev~lGl~P~~ggt~~L~r~vG~~~A~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l 194 (715)
T 1wdk_A 115 LGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENRAEDALKVSAVDAVVTADKL 194 (715)
T ss_dssp ETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSSSEEECGGGH
T ss_pred eHHHHHHHHHCCEEEEeCCCEEeChhhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCceEEeChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcc
Q 030339 157 QLKALEIAQEINQK 170 (179)
Q Consensus 157 ~~~a~~~a~~~~~~ 170 (179)
.+++.++++++++.
T Consensus 195 ~~~a~~~a~~la~~ 208 (715)
T 1wdk_A 195 GAAALDLIKRAISG 208 (715)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999999876
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-39 Score=282.24 Aligned_cols=169 Identities=37% Similarity=0.561 Sum_probs=148.2
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchh----HHHHHHHHHHHHHHHhcCCCcEEEEEcccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSE----IHFYVNTLRSTFSFLEALPIPTIAVIDGAA 76 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a 76 (179)
|+.+|.+++++++.|+++|+||||| +++.||+|.|++++...... ...+...++.++.++.++|||+||+|||+|
T Consensus 35 ~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a 113 (725)
T 2wtb_A 35 VLYNLKSNYEEALSRNDVKAIVITG-AKGRFSGGFDISGFGEMQKGNVKEPKAGYISIDIITDLLEAARKPSVAAIDGLA 113 (725)
T ss_dssp HHHHHHHHHHHHTTCTTCCEEEEEE-SSSCCBCSSCC------------CCSSSHHHHHCCCCCCCTSSSCEEEEECSEE
T ss_pred HHHHHHHHHHHHHhCCCceEEEEEC-CCCcccCCcCHHHHhcccchhhhhHHHHHHHHHHHHHHHHhCcCcEEEEECCcc
Confidence 5789999999999999999999999 55699999999988221110 011233456667788899999999999999
Q ss_pred cchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChH
Q 030339 77 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 156 (179)
Q Consensus 77 ~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~ 156 (179)
+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+|++++++
T Consensus 114 ~GgG~elalacD~ria~~~a~fglpev~lGl~P~~Ggt~~L~rlvG~~~A~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l 193 (725)
T 2wtb_A 114 LGGGLELAMACHARISAPAAQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGLIDAVVPPAEL 193 (725)
T ss_dssp ETHHHHHHHHSSEEEECTTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEECCTTTH
T ss_pred CcccHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhcCHHHHHHHHHcCCCCCHHHHHHCCccceEcChhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcc
Q 030339 157 QLKALEIAQEINQK 170 (179)
Q Consensus 157 ~~~a~~~a~~~~~~ 170 (179)
.+++.+++++++..
T Consensus 194 ~~~a~~~a~~la~~ 207 (725)
T 2wtb_A 194 VTTARRWALDIVGR 207 (725)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999876
|
| >3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.5e-23 Score=158.00 Aligned_cols=146 Identities=16% Similarity=0.158 Sum_probs=113.3
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhc-CCCcEEEEEcccccchh
Q 030339 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEA-LPIPTIAVIDGAALGGG 80 (179)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~kp~ia~v~G~a~g~G 80 (179)
+++|.++|+.++.|+++|+|||+++ |.|.|+.. ...+.+.++.+.. ++||+||+++|.|.|+|
T Consensus 31 ~~~l~~~l~~a~~d~~v~~ivL~~~-----s~Gg~~~~-----------~~~i~~~l~~~~~~~~kPVia~v~g~a~~gG 94 (240)
T 3rst_A 31 HRTFLKNLERAKDDKTVKGIVLKVN-----SPGGGVYE-----------SAEIHKKLEEIKKETKKPIYVSMGSMAASGG 94 (240)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEEE-----ECCBCHHH-----------HHHHHHHHHHHHHHHCCCEEEEEEEEEETHH
T ss_pred HHHHHHHHHHHHhCCCcEEEEEEec-----CCCCCHHH-----------HHHHHHHHHHHHHhCCCeEEEEECCeehHhH
Confidence 4789999999999999999999997 45777642 2345666777777 89999999999999999
Q ss_pred HHHHhhcCEEEEcCCceeecc---------------------cccccccCCcchhh------------------------
Q 030339 81 LEMALACDLRICGEAALLGLP---------------------ETGLAIIPGAGGTQ------------------------ 115 (179)
Q Consensus 81 ~~l~~~~D~~va~~~a~~~~p---------------------~~~~G~~p~~~~~~------------------------ 115 (179)
+.|+++||++++++++.|+.+ ..+.|..++.+..+
T Consensus 95 ~~lA~a~D~i~a~~~a~~g~~Gv~~~~~~~~~~l~k~Gi~~~~~~~G~~k~~~~p~~~~s~~~~~~~~~~l~~~~~~f~~ 174 (240)
T 3rst_A 95 YYISTAADKIFATPETLTGSLGVIMESVNYSKLADKLGISFETIKSGAHADIMSPSREMTKEEKNIMQSMVDNSYEGFVD 174 (240)
T ss_dssp HHHHTTSSEEEECTTCEEECCCCEEEEEECHHHHHHHTCEEEEEESSTTTTTTCTTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCeeEECCCCeEeccceeeEecCHHHHHHHcCCeEEEEeccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 44455555443221
Q ss_pred --hhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHHHHHHH
Q 030339 116 --RLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 164 (179)
Q Consensus 116 --~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~a~~~a 164 (179)
.-.|.+....... +++|+.+++++|+++||||++...+++.+.+.+++
T Consensus 175 ~Va~~R~l~~~~~~~-~~~g~~~~a~~A~~~GLVD~i~~~~~~~~~~~~~~ 224 (240)
T 3rst_A 175 VISKGRGMPKAEVKK-IADGRVYDGRQAKKLNLVDELGFYDDTITAMKKDH 224 (240)
T ss_dssp HHHHHHTCCHHHHHH-HCSSCEEEHHHHHHTTSSSEECCHHHHHHHHHHHC
T ss_pred HHHHhCCCCHHHHHH-HhcCCcccHHHHHHcCCCcccCCHHHHHHHHHHHh
Confidence 1123344444444 67899999999999999999987666665555544
|
| >3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.6e-23 Score=177.48 Aligned_cols=148 Identities=20% Similarity=0.257 Sum_probs=122.8
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchh
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G 80 (179)
|.++|.++|+.++.|+++|+|||++++ .|.|+.. ...+++.+.++..++||||++|+|.|.|||
T Consensus 323 ~~~~l~~~L~~a~~d~~vkaVVL~i~s-----pGG~~~~-----------~~~i~~~i~~l~~~~kPVia~v~g~AasgG 386 (593)
T 3bf0_A 323 GGDTTAAQIRDARLDPKVKAIVLRVNS-----PGGSVTA-----------SEVIRAELAAARAAGKPVVVSMGGMAASGG 386 (593)
T ss_dssp EHHHHHHHHHHHHHCTTEEEEEEEEEE-----EEECHHH-----------HHHHHHHHHHHHHTTCCEEEEEEEEEETHH
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEecC-----CCCCHHH-----------HHHHHHHHHHHHhCCCCEEEEECCChHHHH
Confidence 367899999999999999999999972 4776632 134566777888899999999999999999
Q ss_pred HHHHhhcCEEEEcCCceeecccc------------cccccCCc-------------chh---------------hhhhcc
Q 030339 81 LEMALACDLRICGEAALLGLPET------------GLAIIPGA-------------GGT---------------QRLPRL 120 (179)
Q Consensus 81 ~~l~~~~D~~va~~~a~~~~p~~------------~~G~~p~~-------------~~~---------------~~l~~~ 120 (179)
+.++++||+++|++++.|+.+++ ++|+.|+. +.+ ..|.+.
T Consensus 387 ~~iA~aaD~iva~p~a~~Gsigv~~~~~~~~~~~~klGi~~~~~~~g~~k~~~~~~~~t~~~~~~l~~~l~~~~~~f~~~ 466 (593)
T 3bf0_A 387 YWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLMMQLSIENGYKRFITL 466 (593)
T ss_dssp HHTTTTCSEEEECTTCEEECCCEEEEEEECHHHHHHTTCEEECCBSCGGGCCCTTSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCEEEECCCCEeecceeEEecCchHHHHHhcCceeeeeecccccccCcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999875 57887532 122 456667
Q ss_pred cCHHH-----HHHHHhcCCCcCHHHHHhcCccccccCCChHHHHHHHHH
Q 030339 121 VGKSV-----AKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIA 164 (179)
Q Consensus 121 ~g~~~-----a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~a~~~a 164 (179)
++..+ +.+++++|+.++|+||+++||||++++.+++.+++.+++
T Consensus 467 V~~~Rg~~~~a~~~l~~G~~~ta~eA~~~GLVD~v~~~~~~~~~a~~~a 515 (593)
T 3bf0_A 467 VADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELA 515 (593)
T ss_dssp HHHHTTCCHHHHHTTCTTCEEEHHHHHHHTSCSEECCHHHHHHHHHHHS
T ss_pred HHHHcCCCHHHHHHHhcCCCcCHHHHHHCCCCcCccCHHHHHHHHHHHc
Confidence 77777 889999999999999999999999998777777666644
|
| >3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A | Back alignment and structure |
|---|
Probab=99.85 E-value=6.3e-21 Score=145.47 Aligned_cols=136 Identities=15% Similarity=0.269 Sum_probs=110.0
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEE---cccccc
Q 030339 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVI---DGAALG 78 (179)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v---~G~a~g 78 (179)
.+.|.+.|+.++++ +++.|+|+.+ |.|.|+. ....++..+..++||||+.| +|.|.|
T Consensus 24 ~~~l~~~l~~a~~~-~~~~Ivl~in-----spGG~v~--------------~~~~i~~~i~~~~~PVia~v~p~~G~Aas 83 (230)
T 3viv_A 24 YDQFDRYITIAEQD-NAEAIIIELD-----TPGGRAD--------------AMMNIVQRIQQSKIPVIIYVYPPGASAAS 83 (230)
T ss_dssp HHHHHHHHHHHHHT-TCSEEEEEEE-----BSCEEHH--------------HHHHHHHHHHTCSSCEEEEECSTTCEEET
T ss_pred HHHHHHHHHHHhcC-CCCEEEEEEe-----CCCcCHH--------------HHHHHHHHHHhCCCCEEEEEecCCCEEhH
Confidence 46788999998865 6899999986 5566652 34567777889999999999 999999
Q ss_pred hhHHHHhhcCEEEEcCCceeecccccccccCCcchh---------------hhhhcccCH--HHHHHHHhcCCCcCHHHH
Q 030339 79 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGT---------------QRLPRLVGK--SVAKDIIFTGRKVSGKDA 141 (179)
Q Consensus 79 ~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~---------------~~l~~~~g~--~~a~~l~l~g~~~~a~~a 141 (179)
+|+.|+++||++++.++++|+.+++..+. |..|.+ ..+++..|. ..+++++.++..++|+||
T Consensus 84 aG~~ia~a~d~~~a~p~a~ig~~~p~~~~-~~~G~~~~~~~k~~~~~~~~~~~la~~~Gr~~~~a~~~~~~~~~ltA~EA 162 (230)
T 3viv_A 84 AGTYIALGSHLIAMAPGTSIGACRPILGY-SQNGSIIEAPPAITNYFIAYIKSLAQESGRNATIAEEFITKDLSLTPEEA 162 (230)
T ss_dssp HHHHHHHTSSEEEECTTCEEECCCEEEEE-CTTSCEEECCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTCCEECHHHH
T ss_pred HHHHHHHhcCceeECCCCEEEeccceecC-CCCCCchHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHhcCCeecHHHH
Confidence 99999999999999999999999987532 333332 135566664 789999999999999999
Q ss_pred HhcCccccccCC-ChHHH
Q 030339 142 MSLGLVNYYVPA-GQAQL 158 (179)
Q Consensus 142 ~~~Glv~~v~~~-~~~~~ 158 (179)
+++||||+|+++ +++.+
T Consensus 163 le~GliD~V~~~~~~ll~ 180 (230)
T 3viv_A 163 LKYGVIEVVARDINELLK 180 (230)
T ss_dssp HHTTSCSEECSSHHHHHH
T ss_pred HHcCCceEecCCHHHHHH
Confidence 999999999864 44443
|
| >1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=3e-18 Score=129.99 Aligned_cols=134 Identities=10% Similarity=0.083 Sum_probs=101.1
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhH
Q 030339 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 81 (179)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~ 81 (179)
.+++.+.|..++.+++.+.|+|.-+ |.|.++ .....+++.+..+++|+++.++|.|.++|+
T Consensus 59 a~~i~~~L~~l~~~~~~k~I~l~In-----SPGG~v--------------~ag~~I~~~i~~~~~pV~t~v~G~AaS~G~ 119 (218)
T 1y7o_A 59 ANSVIAQLLFLDAQDSTKDIYLYVN-----TPGGSV--------------SAGLAIVDTMNFIKADVQTIVMGMAASMGT 119 (218)
T ss_dssp HHHHHHHHHHHHHHCTTSCEEEEEE-----ECCBCH--------------HHHHHHHHHHHHSSSCEEEEEEEEEETHHH
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEE-----CcCCCH--------------HHHHHHHHHHHhcCCCEEEEEccEeHHHHH
Confidence 4678888999988877777777653 333333 123345666778899999999999999999
Q ss_pred HHHhhcCE--EEEcCCceeecccccccccCCcch------------------hhhhhcccCH--HHHHHHHhcCCCcCHH
Q 030339 82 EMALACDL--RICGEAALLGLPETGLAIIPGAGG------------------TQRLPRLVGK--SVAKDIIFTGRKVSGK 139 (179)
Q Consensus 82 ~l~~~~D~--~va~~~a~~~~p~~~~G~~p~~~~------------------~~~l~~~~g~--~~a~~l~l~g~~~~a~ 139 (179)
.|+++||. |++.+++.|+++++.-| .+..|. ...+.+..|. ..+.+++.+++.++|+
T Consensus 120 ~Ia~a~d~g~r~a~p~a~igih~p~~g-~~~~G~~~di~~~~~~i~~~~~~~~~~~a~~~G~~~~~i~~~~~~~~~~ta~ 198 (218)
T 1y7o_A 120 VIASSGAKGKRFMLPNAEYMIHQPMGG-TGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVHADAERDNWMSAQ 198 (218)
T ss_dssp HHHTTSCTTCEEECTTCEEECCCCC---------------CHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHSCCCBCHH
T ss_pred HHHHcCCcCcEEEcCCcEEEEeccccc-ccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCCEEcHH
Confidence 99999999 99999999999998733 332222 2345555554 5888899999999999
Q ss_pred HHHhcCccccccCCCh
Q 030339 140 DAMSLGLVNYYVPAGQ 155 (179)
Q Consensus 140 ~a~~~Glv~~v~~~~~ 155 (179)
||+++||||+|+++++
T Consensus 199 EA~e~GLVD~v~~~~~ 214 (218)
T 1y7o_A 199 ETLEYGFIDEIMANNS 214 (218)
T ss_dssp HHHHHTSCSEECCCC-
T ss_pred HHHHCCCCcEEcCcCC
Confidence 9999999999998765
|
| >2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-16 Score=126.72 Aligned_cols=139 Identities=20% Similarity=0.256 Sum_probs=110.0
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhc---CCCcEEEEEcccccc
Q 030339 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEA---LPIPTIAVIDGAALG 78 (179)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~kp~ia~v~G~a~g 78 (179)
.+.+.++++.+.++ .+.+|+|+++ + |.|+.+.. .. ...+.+++..+.. .++|+|++|+|.|.|
T Consensus 139 ~~Ki~r~~e~A~~~-~~PvI~l~~s-G-----Garlqeg~------~~-l~~~~~i~~al~~~~~~~vP~IavV~G~~~G 204 (304)
T 2f9y_B 139 GARFVRAVEQALED-NCPLICFSAS-G-----GARMQEAL------MS-LMQMAKTSAALAKMQERGLPYISVLTDPTMG 204 (304)
T ss_dssp HHHHHHHHHHHHHH-TCCEEEEEEE-S-----SBCGGGTH------HH-HHHHHHHHHHHHHHHHTTCCEEEEEEEEEEH
T ss_pred HHHHHHHHHHHHhC-CCCEEEEECC-C-----CcCHHHHH------HH-HHHHHHHHHHHHHHhcCCCCEEEEEECCCcc
Confidence 46788899999888 8999999987 3 77775431 11 2344555555544 599999999999999
Q ss_pred hh-HHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHH
Q 030339 79 GG-LEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 157 (179)
Q Consensus 79 ~G-~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~ 157 (179)
|| +.++++||++++.++++|++. +...+.+.+|.. ++++..+++++.++|+||.|++++++.
T Consensus 205 Gg~a~~a~~~D~via~~~A~i~v~-----------Gp~~i~~~ig~~------l~~~~~~Ae~~~~~Glvd~Vv~~~el~ 267 (304)
T 2f9y_B 205 GVSASFAMLGDLNIAEPKALIGFA-----------GPRVIEQTVREK------LPPGFQRSEFLIEKGAIDMIVRRPEMR 267 (304)
T ss_dssp HHHTTGGGCCSEEEECTTCBEESS-----------CHHHHHHHHTSC------CCTTTTBHHHHGGGTCCSEECCHHHHH
T ss_pred HHHHHHHhcCCEEEEeCCcEEEee-----------cHHHHHHHhCcc------CCcccCCHHHHHhcCCccEEeCcHHHH
Confidence 99 778999999999999999987 234455555542 467888999999999999999988999
Q ss_pred HHHHHHHHHHhccC
Q 030339 158 LKALEIAQEINQKV 171 (179)
Q Consensus 158 ~~a~~~a~~~~~~~ 171 (179)
+.+.++++.+...|
T Consensus 268 ~~l~~ll~~l~~~~ 281 (304)
T 2f9y_B 268 LKLASILAKLMNLP 281 (304)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhhcCC
Confidence 99999999998653
|
| >2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-15 Score=121.78 Aligned_cols=153 Identities=11% Similarity=0.104 Sum_probs=109.7
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHH
Q 030339 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLE 82 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~ 82 (179)
+...+.++.+++..-. +|.+.-+ ++ |-.|... +.......+...+..+.++++|+|++|+|.|.|||+.
T Consensus 161 ~Ka~r~~~~A~~~~lP-lI~lvDt-~G-a~~g~~a--------E~~g~~~~~a~~l~al~~~~vPvIavV~G~a~GGGa~ 229 (339)
T 2f9y_A 161 RKALRLMQMAERFKMP-IITFIDT-PG-AYPGVGA--------EERGQSEAIARNLREMSRLGVPVVCTVIGEGGSGGAL 229 (339)
T ss_dssp HHHHHHHHHHHHTTCC-EEEEEEE-SC-SCCSHHH--------HHTTHHHHHHHHHHHHHTCSSCEEEEEEEEEEHHHHH
T ss_pred HHHHHHHHHHhhcCCC-EEEEEeC-CC-CccchHH--------HHHHHHHHHHHHHHHHHhCCCCEEEEEeCCcCcHHHH
Confidence 4556777777776544 4444443 22 2223221 1112334556677889999999999999999999999
Q ss_pred HHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccC-C--------
Q 030339 83 MALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVP-A-------- 153 (179)
Q Consensus 83 l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~-~-------- 153 (179)
++++||+++|+++++|++ +.|+++.+.++++..+...+.++ ..+++++|+++|+||+|++ +
T Consensus 230 ~~~~~D~via~p~A~~~v------~~Peg~asil~~~~~~~~~Aae~----~~itA~~a~~~GlVd~VV~ep~gga~~~~ 299 (339)
T 2f9y_A 230 AIGVGDKVNMLQYSTYSV------ISPEGCASILWKSADKAPLAAEA----MGIIRPRLKELKLIDSIIPEPLGGAHRNP 299 (339)
T ss_dssp TTCCCSEEEECTTCEEES------SCHHHHHHHHSSCSTTHHHHHHH----HTCSHHHHHTTTSCSCCCCCSTTCGGGCH
T ss_pred HHhccCeeeecCCCEEEe------eccchHHHHHHHhhccHHHHHHH----cCCCHHHHHHcCCeeEEecCCCCCCccCH
Confidence 999999999999999996 45667777777766676777777 6899999999999999998 3
Q ss_pred C----hHHHHHHHHHHHHhccCHHHHH
Q 030339 154 G----QAQLKALEIAQEINQKVQSVFR 176 (179)
Q Consensus 154 ~----~~~~~a~~~a~~~~~~~~~a~~ 176 (179)
+ ++.+...+..+.+.++++..+.
T Consensus 300 ~~~~~~lr~~l~~~L~~l~~~~~~~l~ 326 (339)
T 2f9y_A 300 EAMAASLKAQLLADLADLDVLSTEDLK 326 (339)
T ss_dssp HHHHHHHHHHHHHHTTTTTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 2 4555555555666666766544
|
| >2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.9e-15 Score=120.76 Aligned_cols=153 Identities=12% Similarity=0.131 Sum_probs=106.8
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHH
Q 030339 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLE 82 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~ 82 (179)
+...+.++.+++..-. +|.+.-+ ++ |-.|.+. +.......+...+..+.++++|+|++|+|.|.|||+.
T Consensus 147 ~Ka~r~~~~A~~~~~P-lI~lvdt-~G-a~~g~~a--------e~~g~~~~~a~~l~al~~~~vPvIavV~G~a~GGGa~ 215 (327)
T 2f9i_A 147 RKALRLMKQAEKFNRP-IFTFIDT-KG-AYPGKAA--------EERGQSESIATNLIEMASLKVPVIAIVIGEGGSGGAL 215 (327)
T ss_dssp HHHHHHHHHHHHTTCC-EEEEEEE-SC-SCCCHHH--------HHTTHHHHHHHHHHHHHTCSSCEEEEEEEEEBHHHHH
T ss_pred HHHHHHHHHHhhcCCC-EEEEEeC-CC-CCcchhh--------hhhhhHHHHHHHHHHHHhCCCCEEEEEECCcChHHHH
Confidence 4566777777777544 4444433 22 2223221 1112234556677888999999999999999999999
Q ss_pred HHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccC-C--------
Q 030339 83 MALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVP-A-------- 153 (179)
Q Consensus 83 l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~-~-------- 153 (179)
++++||+++|+++++|++ +.|.++.+.++.+..+...+.++ ..++|++|+++|+||+|++ +
T Consensus 216 ~~~~~D~via~~~A~~~v------~~peg~a~il~~~~~~a~~A~e~----~~itA~~a~~~GlVd~VV~ep~gga~~~~ 285 (327)
T 2f9i_A 216 GIGIANKVLMLENSTYSV------ISPEGAAALLWKDSNLAKIAAET----MKITAHDIKQLGIIDDVISEPLGGAHKDI 285 (327)
T ss_dssp TTCCCSEEEEETTCBCBS------SCHHHHHHHHSSCGGGHHHHHHH----HTCBHHHHHHTTSSSEEECCCTTCGGGCH
T ss_pred HHHCCCEEEEcCCceEee------cCchHHHHHHHHHhcchHHHHHH----cCCCHHHHHHcCCceEEecCCCCCCccCH
Confidence 999999999999999985 34555555454544454666666 6899999999999999998 3
Q ss_pred C----hHHHHHHHHHHHHhccCHHHHH
Q 030339 154 G----QAQLKALEIAQEINQKVQSVFR 176 (179)
Q Consensus 154 ~----~~~~~a~~~a~~~~~~~~~a~~ 176 (179)
+ ++.+...+..+.+.++++..+.
T Consensus 286 ~~~~~~lr~~l~~~L~~l~~~~~~~l~ 312 (327)
T 2f9i_A 286 EQQALAIKSAFVAQLDSLESLSRDEIA 312 (327)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 2 5555566666666677776554
|
| >2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A | Back alignment and structure |
|---|
Probab=99.48 E-value=2.6e-13 Score=102.07 Aligned_cols=141 Identities=11% Similarity=0.022 Sum_probs=92.8
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhH
Q 030339 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL 81 (179)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~ 81 (179)
.+.+.+.|..++.++..+.|+|.=+ |.|+++ .....+++.+...++|+++.+.|.|.++|+
T Consensus 41 a~~i~~~L~~~~~~~~~k~I~l~In-----SPGG~v--------------~a~~~I~~~i~~~~~pV~~~v~g~AaS~g~ 101 (208)
T 2cby_A 41 ANRLCAQILLLAAEDASKDISLYIN-----SPGGSI--------------SAGMAIYDTMVLAPCDIATYAMGMAASMGE 101 (208)
T ss_dssp HHHHHHHHHHHHHHCSSSCEEEEEE-----ECCBCH--------------HHHHHHHHHHHHCSSCEEEEEEEEEETHHH
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEEE-----CCCCCH--------------HHHHHHHHHHHhcCCCEEEEECcEeHHHHH
Confidence 3567888888887766666665443 122222 123456667778899999999999999999
Q ss_pred HHHhhcCE--EEEcCCceeecccccccccC---Ccch------------hhhhhcc--cCHHHHHHHHhcCCCcCHHHHH
Q 030339 82 EMALACDL--RICGEAALLGLPETGLAIIP---GAGG------------TQRLPRL--VGKSVAKDIIFTGRKVSGKDAM 142 (179)
Q Consensus 82 ~l~~~~D~--~va~~~a~~~~p~~~~G~~p---~~~~------------~~~l~~~--~g~~~a~~l~l~g~~~~a~~a~ 142 (179)
.++++||. |++.|++.++++.+.-|... +... ...+.+. .......+++..+..++++||+
T Consensus 102 ~Ia~agd~~~~~a~p~a~igih~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~~~~~~~~~ta~eA~ 181 (208)
T 2cby_A 102 FLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEAL 181 (208)
T ss_dssp HHHHTSCTTCEEECTTCEEECCCC----------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHTTCEEEHHHHH
T ss_pred HHHhCCCcCCEEEcCCcEEEEecccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHhCCcEEcHHHHH
Confidence 99999998 99999999998876533211 0000 0112222 2345566788899999999999
Q ss_pred hcCccccccC-CChHHHHHH
Q 030339 143 SLGLVNYYVP-AGQAQLKAL 161 (179)
Q Consensus 143 ~~Glv~~v~~-~~~~~~~a~ 161 (179)
++||||++.+ .+++.+..+
T Consensus 182 e~GLvD~i~~~~~~ll~~~~ 201 (208)
T 2cby_A 182 EYGFVDHIITRAHVNGEAQL 201 (208)
T ss_dssp HHTSCSEECSCC--------
T ss_pred HcCCCcEecCchHHHHHHHH
Confidence 9999999996 455554443
|
| >1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A | Back alignment and structure |
|---|
Probab=99.26 E-value=1.2e-11 Score=92.01 Aligned_cols=132 Identities=11% Similarity=0.049 Sum_probs=91.5
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHH
Q 030339 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLE 82 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~ 82 (179)
+.+.+.|..++.++..+.|+|.=+ |.|+++ .....+++.+...++|+++.+.|.|.++|..
T Consensus 41 ~~i~~~L~~l~~~~~~~~I~l~In-----SPGG~v--------------~a~~~I~~~i~~~~~pV~~~v~g~AaS~g~~ 101 (193)
T 1yg6_A 41 NLIVAQMLFLEAENPEKDIYLYIN-----SPGGVI--------------TAGMSIYDTMQFIKPDVSTICMGQAASMGAF 101 (193)
T ss_dssp HHHHHHHHHHHHHCSSSCEEEEEE-----ECCBCH--------------HHHHHHHHHHHHSSSCEEEEEEEEEETHHHH
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEE-----CcCCCH--------------HHHHHHHHHHHhcCCCEEEEEeeeHHHHHHH
Confidence 567778888877666676666544 223332 2234566667788999999999999999999
Q ss_pred HHhhcCE--EEEcCCceeecccccccccC---Ccch------------hhhhhcc--cCHHHHHHHHhcCCCcCHHHHHh
Q 030339 83 MALACDL--RICGEAALLGLPETGLAIIP---GAGG------------TQRLPRL--VGKSVAKDIIFTGRKVSGKDAMS 143 (179)
Q Consensus 83 l~~~~D~--~va~~~a~~~~p~~~~G~~p---~~~~------------~~~l~~~--~g~~~a~~l~l~g~~~~a~~a~~ 143 (179)
++++||. |++.|++.++...+..|... +... ...+.+. .......+++..+..++++||++
T Consensus 102 Ia~ag~~~~r~a~p~s~i~ih~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~~~~~~~~~ta~eA~~ 181 (193)
T 1yg6_A 102 LLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVE 181 (193)
T ss_dssp HHHTSCTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTSSCEEEEHHHHHH
T ss_pred HHHCCCcCcEEEecCcEEEEEeccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCeEEcHHHHHH
Confidence 9999999 99999999988776543211 0000 0011222 23455566665566789999999
Q ss_pred cCccccccCC
Q 030339 144 LGLVNYYVPA 153 (179)
Q Consensus 144 ~Glv~~v~~~ 153 (179)
+||||++.++
T Consensus 182 ~GliD~i~~~ 191 (193)
T 1yg6_A 182 YGLVDSILTH 191 (193)
T ss_dssp HTSSSEECCC
T ss_pred cCCCCEecCC
Confidence 9999999864
|
| >3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A | Back alignment and structure |
|---|
Probab=99.24 E-value=9.3e-11 Score=87.66 Aligned_cols=133 Identities=10% Similarity=0.030 Sum_probs=91.9
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHH
Q 030339 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLE 82 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~ 82 (179)
+.+...|..++.++..+.|+|.=+ |.|+++ .....+...+...++|+++.+.|.|.++|..
T Consensus 42 ~~i~~~L~~l~~~~~~~~I~l~In-----SPGG~v--------------~~~~~I~~~i~~~~~~V~t~~~G~AaSag~~ 102 (203)
T 3qwd_A 42 NSIVSQLLFLQAQDSEKDIYLYIN-----SPGGSV--------------TAGFAIYDTIQHIKPDVQTICIGMAASMGSF 102 (203)
T ss_dssp HHHHHHHHHHHHHCSSSCEEEEEE-----ECCBCH--------------HHHHHHHHHHHHSSSCEEEEEEEEEETHHHH
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEe-----CCCCCH--------------HHHHHHHHHHHHhcCCcEEEEeeeehhHHHH
Confidence 467777888887665555554433 122322 2234556667788999999999999999999
Q ss_pred HHhhcC--EEEEcCCceeecccccccccCCcchh---------------hhhhcc--cCHHHHHHHHhcCCCcCHHHHHh
Q 030339 83 MALACD--LRICGEAALLGLPETGLAIIPGAGGT---------------QRLPRL--VGKSVAKDIIFTGRKVSGKDAMS 143 (179)
Q Consensus 83 l~~~~D--~~va~~~a~~~~p~~~~G~~p~~~~~---------------~~l~~~--~g~~~a~~l~l~g~~~~a~~a~~ 143 (179)
++++|| .|++.+++.+..+.+.-|..-...-. ..+.+. .......+++.....++|+||++
T Consensus 103 i~~ag~~g~r~~~p~a~imiHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tG~~~e~i~~~~~~d~~lta~EA~e 182 (203)
T 3qwd_A 103 LLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKE 182 (203)
T ss_dssp HHHTSCTTCEEECTTCEEECCCCSSSTTTTSCHHHHHHHHHTTHHHHHHHHHHHHHCCCHHHHHHHHTSCCCEEHHHHHH
T ss_pred HHHcCCcCeEEEcCCceEEEecccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhcCceecHHHHHH
Confidence 999999 69999999999886643321110000 011222 23556667776777899999999
Q ss_pred cCccccccCCC
Q 030339 144 LGLVNYYVPAG 154 (179)
Q Consensus 144 ~Glv~~v~~~~ 154 (179)
+||||+|.++.
T Consensus 183 ~GliD~I~~~~ 193 (203)
T 3qwd_A 183 YGLIDEVMVPE 193 (203)
T ss_dssp HTSCSEECCCC
T ss_pred cCCcCEecCCc
Confidence 99999999754
|
| >2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=7.2e-11 Score=89.08 Aligned_cols=131 Identities=8% Similarity=-0.020 Sum_probs=88.6
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHH
Q 030339 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLE 82 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~ 82 (179)
+.+...|..++.++. +.|+|.=+ |.|+++ .....+++.+...++|+++.+.|.|.++|..
T Consensus 54 ~~i~~~L~~l~~~~~-k~I~l~IN-----SPGGsv--------------~a~~~I~~~i~~~~~pV~t~v~g~AAS~g~~ 113 (215)
T 2f6i_A 54 DELISQLLYLDNINH-NDIKIYIN-----SPGGSI--------------NEGLAILDIFNYIKSDIQTISFGLVASMASV 113 (215)
T ss_dssp HHHHHHHHHHHHHCC-SCEEEEEE-----ECCBCH--------------HHHHHHHHHHHHSSSCEEEEEEEEECHHHHH
T ss_pred HHHHHHHHHHHhCCC-CcEEEEEE-----CCCCCH--------------HHHHHHHHHHHhcCCCEEEEEeeEhHhHHHH
Confidence 467777887765554 55555443 123322 2234566677788999999999999999999
Q ss_pred HHhhcCE--EEEcCCceeecccccccccC---Ccch----hh--------hhhcc--cCHHHHHHHHhcCCCcCHHHHHh
Q 030339 83 MALACDL--RICGEAALLGLPETGLAIIP---GAGG----TQ--------RLPRL--VGKSVAKDIIFTGRKVSGKDAMS 143 (179)
Q Consensus 83 l~~~~D~--~va~~~a~~~~p~~~~G~~p---~~~~----~~--------~l~~~--~g~~~a~~l~l~g~~~~a~~a~~ 143 (179)
++++||. +++.|++.+.++.+..|... +... .. .+.+. .......+++.....++++||++
T Consensus 114 Ia~agd~g~i~a~p~s~i~ih~p~~~~~G~~~di~~~~~el~~~~~~i~~~ya~~~g~~~e~i~~~~~~~~~lta~eA~e 193 (215)
T 2f6i_A 114 ILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSDRDYYMNALEAKQ 193 (215)
T ss_dssp HHHTSCTTCEEECTTCEEESSCTTCSCC--------CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHTTCEECHHHHHH
T ss_pred HHHcCCcccEEEcCCCEEEEeccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHhCCeecCHHHHHH
Confidence 9999999 99999999988776433211 1100 00 11111 23455566665666789999999
Q ss_pred cCccccccCC
Q 030339 144 LGLVNYYVPA 153 (179)
Q Consensus 144 ~Glv~~v~~~ 153 (179)
+||||++.+.
T Consensus 194 ~GLiD~I~~~ 203 (215)
T 2f6i_A 194 YGIIDEVIET 203 (215)
T ss_dssp HTSCSEECCC
T ss_pred CCCCCEecCC
Confidence 9999999864
|
| >2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.1e-09 Score=92.07 Aligned_cols=176 Identities=17% Similarity=0.175 Sum_probs=133.2
Q ss_pred HHHHHHHHHHhh-cCCCceEEEEEeCCCCccccccCcccc-ccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEc-ccccc
Q 030339 2 LRGLKHAFETIS-EDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVID-GAALG 78 (179)
Q Consensus 2 ~~~l~~~l~~~~-~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~-G~a~g 78 (179)
-.||.+++..+. +++++..++++..|...--...|-.-. ..+.+-..+....+++.+.++.-...-+++.|. |.|+.
T Consensus 310 ~~el~~All~l~~ne~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~~~~ 389 (556)
T 2w3p_A 310 AREFDDAILSMRTNELAVGTWVFRTEGDARHLLAADASLMQHKDHWFVRETIGLLRRTLARIDVSSRSLFALIEPGSCFA 389 (556)
T ss_dssp HHHHHHHHHHHHHHCSSCCEEEEEEESCHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHTCSSEEEEEECTTCCEE
T ss_pred hhHHHHHHHhhhhccHHHhHhhhhccCCHHHHhhhHHHHHhccchHHHHHHHHHHHHHHHHhcccchhheeeecCCcchH
Confidence 467755555554 778999999988732211111111111 223445566677778888999999999999996 99987
Q ss_pred hh-HHHHhhcCEEEEcC-------CceeecccccccccCCcchhhhhhcc-cCHHHHHHH--HhcCCCcCHHHHHhcCcc
Q 030339 79 GG-LEMALACDLRICGE-------AALLGLPETGLAIIPGAGGTQRLPRL-VGKSVAKDI--IFTGRKVSGKDAMSLGLV 147 (179)
Q Consensus 79 ~G-~~l~~~~D~~va~~-------~a~~~~p~~~~G~~p~~~~~~~l~~~-~g~~~a~~l--~l~g~~~~a~~a~~~Glv 147 (179)
|- ++|+++||..++-+ ...+.+.+.|+|..|...+..+|..+ .+....... ...|+++++++|.++|||
T Consensus 390 g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (556)
T 2w3p_A 390 GTFAELAFAADRTYMAALPANEDEEPAITLSEVNFGLYPMVTHQSRLARRFYEETEPLDAVRSRIGQAIKPVEAERLGLV 469 (556)
T ss_dssp GGGHHHHHTSSEEEECCCTTCTTTSCCEECCGGGGTTSCCTTSSCHHHHHTTTCHHHHHHHHTTTTSCBCHHHHHHTTSS
T ss_pred HHHHHHHHHhhhhhhhcCCCCCCCCceeEeeccccCcccCCCchhHHHHHhcCCcchHHHHHHHhCCCCCHHHHHhcCCe
Confidence 76 88999999999943 36799999999999988888888665 453333322 235999999999999999
Q ss_pred ccccCCChHHHHHHHHHHHHhccCHHHHHh
Q 030339 148 NYYVPAGQAQLKALEIAQEINQKVQSVFRI 177 (179)
Q Consensus 148 ~~v~~~~~~~~~a~~~a~~~~~~~~~a~~~ 177 (179)
+...++-++++|.+-..++-++.+|+++-.
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (556)
T 2w3p_A 470 TASPDDIDWADEIRIALEERAAMSPDALTG 499 (556)
T ss_dssp SBCCCTTTHHHHHHHHHHHHHHSCHHHHHH
T ss_pred ecCcccCChHHHHHHHHHHHhccCcchhcc
Confidence 999999999999999999999999999753
|
| >1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=2.8e-10 Score=88.59 Aligned_cols=132 Identities=11% Similarity=0.045 Sum_probs=89.1
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHH
Q 030339 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLE 82 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~ 82 (179)
+.+...|..++.++..+.|+|.=+ |.|+++ .....++..+...++|+++.+.|.|.++|..
T Consensus 97 ~~iiaqL~~l~~ed~~k~I~L~IN-----SPGGsV--------------~ag~aIyd~I~~~k~pV~t~v~G~AASaG~~ 157 (277)
T 1tg6_A 97 SLVIAQLLFLQSESNKKPIHMYIN-----SPGGVV--------------TAGLAIYDTMQYILNPICTWCVGQAASMGSL 157 (277)
T ss_dssp HHHHHHHHHHHHHCSSSCEEEEEE-----ECCBCH--------------HHHHHHHHHHHHSCSCEEEEEEEEEETHHHH
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEE-----CCCCCH--------------HHHHHHHHHHHhcCCCEEEEEccEeHHHHHH
Confidence 456777777765444566666544 222322 2234456667788899999999999999999
Q ss_pred HHhhcCE--EEEcCCceeecccccccccCCcchhh---------------hhhcc--cCHHHHHHHHhcCCCcCHHHHHh
Q 030339 83 MALACDL--RICGEAALLGLPETGLAIIPGAGGTQ---------------RLPRL--VGKSVAKDIIFTGRKVSGKDAMS 143 (179)
Q Consensus 83 l~~~~D~--~va~~~a~~~~p~~~~G~~p~~~~~~---------------~l~~~--~g~~~a~~l~l~g~~~~a~~a~~ 143 (179)
++++||. |++.+++.++...+.-|......-.. .+.+. .......+++..+..++++||++
T Consensus 158 Ia~Agd~gkr~a~P~S~ImihqP~~g~~G~a~Di~~~a~ei~~~~~~~~~i~a~~tG~~~e~i~~~~drd~~lta~EAle 237 (277)
T 1tg6_A 158 LLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQE 237 (277)
T ss_dssp HHHTSCTTCEEECTTCEEEECCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHSSCEEECHHHHHH
T ss_pred HHHCCCcCCEEEecCCEEEEecccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcccCHHHHHH
Confidence 9999999 99999999988776433321100000 11111 22455566666667889999999
Q ss_pred cCccccccCC
Q 030339 144 LGLVNYYVPA 153 (179)
Q Consensus 144 ~Glv~~v~~~ 153 (179)
+||||++.+.
T Consensus 238 ~GLID~I~~~ 247 (277)
T 1tg6_A 238 FGILDKVLVH 247 (277)
T ss_dssp HTSCSEECSS
T ss_pred CCCCCEecCc
Confidence 9999999963
|
| >3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.4e-10 Score=86.54 Aligned_cols=135 Identities=7% Similarity=-0.005 Sum_probs=90.6
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHH
Q 030339 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLE 82 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~ 82 (179)
+.+...|..++.++..+.|+|.=+ |.|+++ .....++..+...++|+++.+.|.|.++|..
T Consensus 45 ~~i~~~L~~l~~~~~~~~I~l~IN-----SpGG~v--------------~~~~~I~~~i~~~~~~v~t~~~G~AaS~g~~ 105 (201)
T 3p2l_A 45 NLVIAQLLFLESEDPDKDIYFYIN-----SPGGMV--------------TAGMGVYDTMQFIKPDVSTICIGLAASMGSL 105 (201)
T ss_dssp HHHHHHHHHHHHHCSSSCEEEEEE-----ECCBCH--------------HHHHHHHHHHHHSSSCEEEEEEEEEETHHHH
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEE-----CCCCCH--------------HHHHHHHHHHHHhCCCeEEEEcCEehhHHHH
Confidence 456777887876655555555443 223332 2234566777788999999999999999999
Q ss_pred HHhhcCE--EEEcCCceeecccccccccCCcc---------------hhhhhhcc--cCHHHHHHHHhcCCCcCHHHHHh
Q 030339 83 MALACDL--RICGEAALLGLPETGLAIIPGAG---------------GTQRLPRL--VGKSVAKDIIFTGRKVSGKDAMS 143 (179)
Q Consensus 83 l~~~~D~--~va~~~a~~~~p~~~~G~~p~~~---------------~~~~l~~~--~g~~~a~~l~l~g~~~~a~~a~~ 143 (179)
+++++|. |++.|++.+..+.+.-|...... ....+.+. .......+++.....++|+||++
T Consensus 106 i~~ag~~g~r~~~p~a~imiH~p~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~e~i~~~~~~~~~lta~EA~e 185 (201)
T 3p2l_A 106 LLAGGAKGKRYSLPSSQIMIHQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDTDRDNFMMADEAKA 185 (201)
T ss_dssp HHHTSSTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTSSCEEEEHHHHHH
T ss_pred HHHcCccCCEEEcCCCeEEEeccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhhcCeeecHHHHHH
Confidence 9999998 99999999988876533211000 00011122 23455566665566789999999
Q ss_pred cCccccccCC-ChH
Q 030339 144 LGLVNYYVPA-GQA 156 (179)
Q Consensus 144 ~Glv~~v~~~-~~~ 156 (179)
+||||+|.++ +++
T Consensus 186 ~GliD~I~~~~~~l 199 (201)
T 3p2l_A 186 YGLIDHVIESREAI 199 (201)
T ss_dssp HTSCSEECCCSCC-
T ss_pred cCCccEecCCHHHh
Confidence 9999999964 444
|
| >3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A | Back alignment and structure |
|---|
Probab=99.01 E-value=3.8e-09 Score=90.67 Aligned_cols=86 Identities=10% Similarity=0.071 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCCccccc-cCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchh
Q 030339 2 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAG-ADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 2 ~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G-~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G 80 (179)
.+++.+.|+.+++|+.++.|+|.-+ |.| .++. -..++++.++.+...+|||||.+++ +..+|
T Consensus 72 ~~~i~~~L~~a~~d~~ik~I~L~in-----spGgG~v~-----------~~~~I~~~i~~~k~~gkpvva~~~~-aas~~ 134 (593)
T 3bf0_A 72 LFDIVNTIRQAKDDRNITGIVMDLK-----NFAGGDQP-----------SMQYIGKALKEFRDSGKPVYAVGEN-YSQGQ 134 (593)
T ss_dssp HHHHHHHHHHHHHCTTCCCEEEECT-----EEEECCHH-----------HHHHHHHHHHHHHHTTCCEEEEESC-EEHHH
T ss_pred HHHHHHHHHHHHhCCCceEEEEEeC-----CCCCCcHH-----------HHHHHHHHHHHHHhcCCeEEEEEcc-chhHH
Confidence 4578889999999999999999876 223 4442 1245566677777778999999875 67788
Q ss_pred HHHHhhcCEEEEcCCceeeccccc
Q 030339 81 LEMALACDLRICGEAALLGLPETG 104 (179)
Q Consensus 81 ~~l~~~~D~~va~~~a~~~~p~~~ 104 (179)
+.|+++||.+++.|.+.++...+.
T Consensus 135 y~lAsaad~i~~~P~~~vg~~g~~ 158 (593)
T 3bf0_A 135 YYLASFANKIWLSPQGVVDLHGFA 158 (593)
T ss_dssp HHHHTTSSEEEECTTCCEECCCCB
T ss_pred HHHHHhCCEEEECCCceEEEeccc
Confidence 999999999999999998887664
|
| >4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A | Back alignment and structure |
|---|
Probab=98.79 E-value=3e-08 Score=73.95 Aligned_cols=101 Identities=11% Similarity=0.119 Sum_probs=73.3
Q ss_pred HHHHHHHHhcCCCcEEEEEcccccchhHHHHhhcC--EEEEcCCceeecccccccc-c---CCcc------------hhh
Q 030339 54 LRSTFSFLEALPIPTIAVIDGAALGGGLEMALACD--LRICGEAALLGLPETGLAI-I---PGAG------------GTQ 115 (179)
Q Consensus 54 ~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D--~~va~~~a~~~~p~~~~G~-~---p~~~------------~~~ 115 (179)
...++..+...+.||.+.+-|.|.+.|..|++++| .|++.|++++-+..+..|. . .+.. ...
T Consensus 85 glaIyd~m~~~~~~V~t~~~G~AaS~as~il~aG~~gkR~~lP~a~iMIHqP~~~~~~G~a~di~i~a~el~~~~~~i~~ 164 (205)
T 4gm2_A 85 VISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSIIPFNQATNIEIQNKEIMNTKKKVIE 164 (205)
T ss_dssp HHHHHHHHHHSSSCEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEEECCCCCCCCSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEEeeehhHHHHHHhcCCCCCEEecCCCEEEEecCcccccccCHHHHHHHHHHHHHHHHHHHH
Confidence 34566777788999999999999999999999999 5999999999887776443 1 1110 001
Q ss_pred hhhccc--CHHHHHHHHhcCCCcCHHHHHhcCccccccCCC
Q 030339 116 RLPRLV--GKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG 154 (179)
Q Consensus 116 ~l~~~~--g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~ 154 (179)
.+.+.. +.....+++.....++|+||+++||||+|++++
T Consensus 165 iya~~TG~~~e~I~~~m~rd~~msa~EA~eyGlID~V~~~e 205 (205)
T 4gm2_A 165 IISKNTEKDTNVISNVLERDKYFNADEAVDFKLIDHILEKE 205 (205)
T ss_dssp HHHHHHTCCHHHHHHHTTSCEEEEHHHHHHTTSCSEECCC-
T ss_pred HHHHHhCCCHHHHHHHhcCCcccCHHHHHHcCCccEeecCC
Confidence 111221 244555666667789999999999999998653
|
| >1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4 | Back alignment and structure |
|---|
Probab=98.35 E-value=6.2e-07 Score=76.53 Aligned_cols=101 Identities=19% Similarity=0.149 Sum_probs=71.3
Q ss_pred HHHHhcCCCcEEEEEcccccchhHHHHhhcCEEEEcCC-ceeecccccccccCCcchhhhhhcccCHHHHHHHH-hcCCC
Q 030339 58 FSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEA-ALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDII-FTGRK 135 (179)
Q Consensus 58 ~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D~~va~~~-a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~-l~g~~ 135 (179)
...+.....|+|+++.|.|.|||... ..||++++.++ +.+++..+. ++-.. .-...++...+.+++ .+|+.
T Consensus 174 ~~~ls~~giP~Isvv~G~~~GGga~~-a~~d~vim~e~~a~i~~~GP~--vi~~~----~~~~~~d~~~A~el~~~tge~ 246 (587)
T 1pix_A 174 NAELNQLGIPVIVGIYGTNPAGGGYH-SISPTVIIAHEKANMAVGGAG--IMGGM----NPKGHVDLEYANEIADMVDRT 246 (587)
T ss_dssp HHHHHHTTCCEEEEECSEEETHHHHH-HHSSSEEEEETTCEEESCCCT--TCCSC----CSSSSCCHHHHHHHHHHHHTT
T ss_pred HHHHhCCCCCEEEEEecCCcHHHHHH-HhcCceEEecCCcEEEecCHH--HHhhh----ccccccchhHHHHHHHHhCCc
Confidence 45566789999999999999999999 99999988875 888764331 11110 011236889999999 88888
Q ss_pred cCHHH-----HH--hcCccccccCCCh-HHHHHHHHHH
Q 030339 136 VSGKD-----AM--SLGLVNYYVPAGQ-AQLKALEIAQ 165 (179)
Q Consensus 136 ~~a~~-----a~--~~Glv~~v~~~~~-~~~~a~~~a~ 165 (179)
+++++ .+ +.|++|.++++++ ..+.++++..
T Consensus 247 v~~e~lgga~~h~~~~GvvD~vv~~e~~a~~~~r~~ls 284 (587)
T 1pix_A 247 GKTEPPGAVDIHYTETGFMREVYASEEGVLEGIKKYVG 284 (587)
T ss_dssp CCCCCSSBHHHHTTTSCCSCEEESSHHHHHHHHHHHHH
T ss_pred cChhhcccHHHHHhhcCceeEecCCHHHHHHHHHHHHH
Confidence 77554 33 6899999998754 3334444433
|
| >2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.33 E-value=2.8e-05 Score=60.74 Aligned_cols=135 Identities=12% Similarity=0.106 Sum_probs=83.2
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHH--HHHHHHHHHHHHhcCCCcEEEEEcccccchh
Q 030339 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHF--YVNTLRSTFSFLEALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G 80 (179)
+.+.++++.+.+.. +-+|.+.-+ ++. -. .+.... ....+...+.++.....|.|+.+.|.|.||+
T Consensus 143 ~K~~r~ie~A~~~~-lPlI~l~ds-gGa-----r~------qEGi~sl~q~aki~~~l~~~s~~~vP~Isvv~g~~~GG~ 209 (285)
T 2f9i_B 143 EKICRIIDYCTENR-LPFILFSAS-GGA-----RM------QEGIISLMQMGKTSVSLKRHSDAGLLYISYLTHPTTGGV 209 (285)
T ss_dssp HHHHHHHHHHHHTT-CCEEEEEEE-CSC-----CG------GGHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEHHH
T ss_pred HHHHHHHHHHHHcC-CCEEEEEeC-CCc-----ch------hhhhhhHhHHHHHHHHHHHHHcCCCCEEEEEeCCccHHH
Confidence 34566677776664 446666554 221 11 122222 1123334556666789999999999999998
Q ss_pred HHH-HhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 81 LEM-ALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 81 ~~l-~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
... ++.+|++++.+++.+++-..+. ....+.+.++. .--+++.+.+.|+||.|+++++..+.
T Consensus 210 ~as~a~~~D~i~a~p~A~i~~aGP~v-------i~~~~~~~~~e----------~~~~Ae~~~~~G~iD~Iv~~~e~r~~ 272 (285)
T 2f9i_B 210 SASFASVGDINLSEPKALIGFAGRRV-------IEQTINEKLPD----------DFQTAEFLLEHGQLDKVVHRNDMRQT 272 (285)
T ss_dssp HTTGGGCCSEEEECTTCBEESSCHHH-------HHHHHTSCCCT----------TTTBHHHHHHTTCCSEECCGGGHHHH
T ss_pred HHHhhhCCCEEEEeCCcEEEEcCHHH-------HHHHhcccchH----------hHhhHHHHHhcCCccEEeChHHHHHH
Confidence 554 8999999999999887643321 11111111110 11246777899999999998877766
Q ss_pred HHHHHHHH
Q 030339 160 ALEIAQEI 167 (179)
Q Consensus 160 a~~~a~~~ 167 (179)
..++...+
T Consensus 273 l~~~L~~l 280 (285)
T 2f9i_B 273 LSEILKIH 280 (285)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 66665543
|
| >3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A | Back alignment and structure |
|---|
Probab=98.26 E-value=2.7e-05 Score=65.65 Aligned_cols=130 Identities=17% Similarity=0.219 Sum_probs=82.1
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcC--CCcEEEEEcccccchh
Q 030339 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEAL--PIPTIAVIDGAALGGG 80 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~kp~ia~v~G~a~g~G 80 (179)
+.+.++++.+.+. .+-+|.|.-+ + |..+.+ .... +..+.+.+.++..+ ..|+|+++.|.|.||+
T Consensus 119 ~Ki~ra~e~A~~~-~lP~I~l~dS-g-----GaRmqE------g~~~-l~~~~~i~~~~~~~s~~iP~Isvv~G~~~GG~ 184 (530)
T 3iav_A 119 QKIVKVMDFALKT-GCPVVGINDS-G-----GARIQE------GVAS-LGAYGEIFRRNTHASGVIPQISLVVGPCAGGA 184 (530)
T ss_dssp HHHHHHHHHHHHH-TCCEEEEECC-C-----SBCGGG------THHH-HHHHHHHHHHHHHTTTTSCEEEEECSEEEGGG
T ss_pred HHHHHHHHHHHHc-CCCEEEEEcC-C-----Ccchhh------hhhh-HHHHHHHHHHHHHHcCCCCEEEEEecCcchHH
Confidence 3456666766665 3446666544 2 333321 1111 12223333333222 4899999999999999
Q ss_pred HHHHhhcCEEEEcCC-ceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHH-------HhcCccccccC
Q 030339 81 LEMALACDLRICGEA-ALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA-------MSLGLVNYYVP 152 (179)
Q Consensus 81 ~~l~~~~D~~va~~~-a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a-------~~~Glv~~v~~ 152 (179)
......||++|+.++ +.+++. |++..+. .+|+.+++++. ...|++|.+++
T Consensus 185 a~~~al~D~~im~~~~a~i~~a--------------------GP~vi~~--~~ge~v~~e~LGGa~~h~~~sGv~d~va~ 242 (530)
T 3iav_A 185 VYSPAITDFTVMVDQTSHMFIT--------------------GPDVIKT--VTGEDVGFEELGGARTHNSTSGVAHHMAG 242 (530)
T ss_dssp GHHHHHSSEEEEETTTCEEESS--------------------CHHHHHH--HHCCCCCHHHHHBHHHHHHTSCCCSEEES
T ss_pred HHHHHhCCEEEEecCCcEEEec--------------------CHHHHHH--HhCCcCChhhcchHHHHHhccCceeEEec
Confidence 998889999999876 877763 2222221 36778888765 58999999998
Q ss_pred CC-hHHHHHHHHHHHHh
Q 030339 153 AG-QAQLKALEIAQEIN 168 (179)
Q Consensus 153 ~~-~~~~~a~~~a~~~~ 168 (179)
++ +..+.++++...+-
T Consensus 243 de~~a~~~~r~~ls~lp 259 (530)
T 3iav_A 243 DEKDAVEYVKQLLSYLP 259 (530)
T ss_dssp SHHHHHHHHHHHHHHSC
T ss_pred ChHHHHHHHHHHHHhcc
Confidence 65 46666666666553
|
| >3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans} | Back alignment and structure |
|---|
Probab=98.16 E-value=5.2e-05 Score=63.96 Aligned_cols=82 Identities=17% Similarity=0.231 Sum_probs=60.4
Q ss_pred CCCcEEEEEcccccchhHHHHhhcCEEEEcCC-ceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHH-
Q 030339 64 LPIPTIAVIDGAALGGGLEMALACDLRICGEA-ALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA- 141 (179)
Q Consensus 64 ~~kp~ia~v~G~a~g~G~~l~~~~D~~va~~~-a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a- 141 (179)
-..|+|+++.|+|.||+......||++|+.++ +.+++. |++..+. .+|+.+++++.
T Consensus 176 ~~iP~Isvv~Gp~~GG~a~s~a~~D~vi~~~~~a~i~~a--------------------GP~vI~~--~~ge~v~~E~LG 233 (531)
T 3n6r_B 176 GVVPQISMIMGPCAGGAVYSPAMTDFIFMVKDSSYMFVT--------------------GPDVVKT--VTNEQVSAEELG 233 (531)
T ss_dssp TTSCEEEEECSCCBGGGGHHHHHSSEEEEETTTCBCBSS--------------------CHHHHHH--HHCCCCCHHHHH
T ss_pred CCCCEEEEEeCCcchHHHHHhhhCCEEEEecCCceEeec--------------------CHHHHHH--HhCCccChhhcc
Confidence 45899999999999999888888999999986 766642 2222221 36788999988
Q ss_pred ------HhcCccccccCCC-hHHHHHHHHHHHH
Q 030339 142 ------MSLGLVNYYVPAG-QAQLKALEIAQEI 167 (179)
Q Consensus 142 ------~~~Glv~~v~~~~-~~~~~a~~~a~~~ 167 (179)
.+.|++|.+++++ +..+.++++...+
T Consensus 234 Ga~~h~~~sG~~d~v~~~e~~a~~~~r~lls~L 266 (531)
T 3n6r_B 234 GATTHTRKSSVADAAFENDVEALAEVRRLVDFL 266 (531)
T ss_dssp BHHHHHHTTSCCSEEESSHHHHHHHHHHHHTTS
T ss_pred hHHHHhhccCcceEEeCCHHHHHHHHHHHHHhc
Confidence 8899999999874 3444444444433
|
| >1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=3.5e-05 Score=65.02 Aligned_cols=132 Identities=20% Similarity=0.240 Sum_probs=80.2
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHH
Q 030339 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLE 82 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~ 82 (179)
+.+.++++.+.+. .+-+|.+..+ .|..+.+- ......+.+.+.++.+ . .-..|.|+++.|+|.||+..
T Consensus 117 ~Ki~ra~e~A~~~-~lP~I~l~~S------GGARmqeg---~~sl~~~~~i~~~~~~-~-s~~iP~Isvv~gp~~GG~a~ 184 (523)
T 1on3_A 117 TKVVETMEQALLT-GTPFLFFYDS------GGARIQEG---IDSLSGYGKMFFANVK-L-SGVVPQIAIIAGPCAGGASY 184 (523)
T ss_dssp HHHHHHHHHHHHH-TCCEEEEEEE------CSBCGGGT---HHHHHHHHHHHHHHHH-H-TTTSCEEEEEEEEEESGGGH
T ss_pred HHHHHHHHHHHHc-CCCEEEEEcC------CCCChhhH---HHHHHHHHHHHHHHHH-h-cCCCCEEEEEcCCCchHHHH
Confidence 3466667766665 3445666543 24444321 1122222222222222 2 34599999999999999999
Q ss_pred HHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHH-----HHH--hcCccccccCC-C
Q 030339 83 MALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGK-----DAM--SLGLVNYYVPA-G 154 (179)
Q Consensus 83 l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~-----~a~--~~Glv~~v~~~-~ 154 (179)
..+.||++|+.+++.+++.. ++.... .+|+.++.+ +.+ +.|++|.++++ .
T Consensus 185 s~~l~D~ii~~~~a~i~~aG--------------------P~vI~~--~~ge~~~~e~lggae~h~~~~G~vd~vv~d~~ 242 (523)
T 1on3_A 185 SPALTDFIIMTKKAHMFITG--------------------PQVIKS--VTGEDVTADELGGAEAHMAISGNIHFVAEDDD 242 (523)
T ss_dssp HHHHSSEEEEETTCEEESSC--------------------HHHHHH--HHCCCCCHHHHHSHHHHHHTTCCCSEEESSHH
T ss_pred HHhhCCeEEEeCCCEEEecC--------------------HHHHHH--HhCCcCChHhcccHHHHhhccCceEEEeCCHH
Confidence 99999999999998877652 222211 245666643 333 68999999985 3
Q ss_pred hHHHHHHHHHHHHh
Q 030339 155 QAQLKALEIAQEIN 168 (179)
Q Consensus 155 ~~~~~a~~~a~~~~ 168 (179)
+..+.+.++..-+-
T Consensus 243 ~~~~~~r~lL~~lp 256 (523)
T 1on3_A 243 AAELIAKKLLSFLP 256 (523)
T ss_dssp HHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHhcC
Confidence 45555666555443
|
| >1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.07 E-value=7.2e-05 Score=63.12 Aligned_cols=133 Identities=21% Similarity=0.229 Sum_probs=81.2
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHH
Q 030339 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLE 82 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~ 82 (179)
+.+.++++.+.+. .+-+|.+..+ .|..+.+- ......+.+.+.++.+ + .-..|.|+++.|+|.||+..
T Consensus 113 ~Ki~ra~e~A~~~-~~P~I~l~~S------GGaRmqeg---~~sl~~~~~i~~~~~~-~-s~~iP~Isvv~gp~~GG~a~ 180 (522)
T 1x0u_A 113 NKIVRAYELALKV-GAPVVGINDS------GGARIQEG---ALSLEGYGAVFKMNVM-A-SGVIPQITIMAGPAAGGAVY 180 (522)
T ss_dssp HHHHHHHHHHHHH-TCCEEEEECC------CSBCGGGT---HHHHHHHHHHHHHHHH-H-TTTSCEEEEECSEEEGGGGH
T ss_pred HHHHHHHHHHHHc-CCCEEEEEcC------CCCChhHH---HHHHHHHHHHHHHHHH-h-CCCCcEEEEEcCCCchHHHH
Confidence 3456667766665 4456666654 24444321 1122222222222222 2 34589999999999999999
Q ss_pred HHhhcCEEEEcCC-c-eeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHH-----HHH--hcCccccccCC
Q 030339 83 MALACDLRICGEA-A-LLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGK-----DAM--SLGLVNYYVPA 153 (179)
Q Consensus 83 l~~~~D~~va~~~-a-~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~-----~a~--~~Glv~~v~~~ 153 (179)
....||++|+.++ + .+++.. ++.... .+|+.++.+ +.+ +.|++|.++++
T Consensus 181 s~~l~D~~i~~~~~a~~i~~aG--------------------P~vI~~--~~ge~~~~e~lggae~~~~~~G~~d~vv~~ 238 (522)
T 1x0u_A 181 SPALTDFIIMIKGDAYYMFVTG--------------------PEITKV--VLGEEVSFQDLGGAVVHATKSGVVHFMVDS 238 (522)
T ss_dssp HHHHSSEEEEECSTTCEEESSC--------------------HHHHHH--TTCCCCCHHHHHBHHHHHHTTCCCSEEESC
T ss_pred HHhcCCeEEEecCCccEEEecC--------------------HHHHHH--HhCCcCChhhcchHHHHhhcCceeEEEeCC
Confidence 9999999999998 7 666532 211111 245666643 323 68999999985
Q ss_pred -ChHHHHHHHHHHHHhc
Q 030339 154 -GQAQLKALEIAQEINQ 169 (179)
Q Consensus 154 -~~~~~~a~~~a~~~~~ 169 (179)
.+..+.+.++..-+-+
T Consensus 239 ~~~~~~~~~~ll~~lp~ 255 (522)
T 1x0u_A 239 EQEAINLTKRLLSYLPS 255 (522)
T ss_dssp HHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHhccc
Confidence 4566666666665543
|
| >2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A | Back alignment and structure |
|---|
Probab=98.03 E-value=0.0002 Score=60.76 Aligned_cols=129 Identities=21% Similarity=0.219 Sum_probs=78.2
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHh--cCCCcEEEEEcccccchh
Q 030339 3 RGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLE--ALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 3 ~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~kp~ia~v~G~a~g~G 80 (179)
+.+.++++.+.+. .+-+|.+.-+ .|..+.+- ...... +.+++.++. .-..|.|+++.|+|.||+
T Consensus 130 ~Ki~ra~e~A~~~-~lP~I~l~dS------GGARmqeg---~~sl~~----~~~i~~~~~~~s~~iP~Isvv~gp~~GG~ 195 (548)
T 2bzr_A 130 EKIVKVQELAIKT-GRPLIGINDG------AGARIQEG---VVSLGL----YSRIFRNNILASGVIPQISLIMGAAAGGH 195 (548)
T ss_dssp HHHHHHHHHHHHH-TCCEEEEECC------CSCCGGGT---THHHHH----HHHHHHHHHHTTTTSCEEEEECSEEESGG
T ss_pred HHHHHHHHHHHHc-CCCEEEEEcC------CCCCchhH---HHHHHH----HHHHHHHHHHhcCCCcEEEEecCCCchHH
Confidence 3456667766665 4456666554 24444321 112222 233333332 334899999999999999
Q ss_pred HHHHhhcCEEEEcCC-ceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHH-----HHH--hcCccccccC
Q 030339 81 LEMALACDLRICGEA-ALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGK-----DAM--SLGLVNYYVP 152 (179)
Q Consensus 81 ~~l~~~~D~~va~~~-a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~-----~a~--~~Glv~~v~~ 152 (179)
......||++|+.++ +.+++. |++.... .+|+.++.+ +.+ +.|++|.+++
T Consensus 196 a~s~al~D~ii~~~~~a~i~~a--------------------GP~vI~~--~~ge~v~~e~lggae~h~~~sG~~d~vv~ 253 (548)
T 2bzr_A 196 VYSPALTDFVIMVDQTSQMFIT--------------------GPDVIKT--VTGEEVTMEELGGAHTHMAKSGTAHYAAS 253 (548)
T ss_dssp GHHHHHSSEEEEETTTCEEESS--------------------CHHHHHH--HHCCCCCHHHHHBHHHHHHTSSCCSEEES
T ss_pred HHHHHhCCeEEeccCceeEEec--------------------cHHHHHH--HhCCcCChHhcccHHHHhhccCceeEEeC
Confidence 888889999999997 877754 2222221 245666653 323 6899999997
Q ss_pred CC-hHHHHHHHHHHHH
Q 030339 153 AG-QAQLKALEIAQEI 167 (179)
Q Consensus 153 ~~-~~~~~a~~~a~~~ 167 (179)
++ +..+.++++..-+
T Consensus 254 d~~~~~~~~r~lls~l 269 (548)
T 2bzr_A 254 GEQDAFDYVRELLSYL 269 (548)
T ss_dssp SHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHhc
Confidence 53 4555555554443
|
| >1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.02 E-value=3.7e-05 Score=64.88 Aligned_cols=146 Identities=14% Similarity=0.087 Sum_probs=89.5
Q ss_pred HHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHHH
Q 030339 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEM 83 (179)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l 83 (179)
...+.++.+++. .+-+|.|.-+ ..|..|.+- +.......+.+++..+.....|.|+.+-|.+.|||+..
T Consensus 348 K~ar~i~~a~~~-~~Plv~l~ds--~G~~~G~~~--------E~~G~~~~~Ak~l~~~~~~~vP~Isvi~g~~~GGg~~~ 416 (522)
T 1x0u_A 348 KAARFIRFCDAF-NIPLISLVDT--PGYVPGTDQ--------EYKGIIRHGAKMLYAFAEATVPKITVIVRKSYGGAHIA 416 (522)
T ss_dssp HHHHHHHHHHHT-TCCEEEEEEE--CCBCCSHHH--------HHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHH
T ss_pred HHHHHHHHHhhC-CCCEEEEecC--CCCCCchHH--------HHHHHHHHHHHHHHHHHhCCCCEEEEEeCCcccHHHHH
Confidence 455566666555 4445655544 234444322 22233345666788888999999999999999998765
Q ss_pred Hhh----cCEEEEcCCceeecccccccccCCcchhhhhhcc-c---------CHHHHHHHHhcCCCcCHHHHHhcCcccc
Q 030339 84 ALA----CDLRICGEAALLGLPETGLAIIPGAGGTQRLPRL-V---------GKSVAKDIIFTGRKVSGKDAMSLGLVNY 149 (179)
Q Consensus 84 ~~~----~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~-~---------g~~~a~~l~l~g~~~~a~~a~~~Glv~~ 149 (179)
... +|+++|.+++.+++-... +....+-+. + -.....+.- -..-++..+.+.|+||.
T Consensus 417 ~a~~a~~~D~v~a~p~A~i~v~gpe-------gaa~Il~r~~i~~~~d~~~~~~~l~~~y~--~~~~~~~~~~~~G~iD~ 487 (522)
T 1x0u_A 417 MSIKSLGADLVYAWPTAEIAVTGPE-------GAVRILYRKEIQQASNPDDVLKQRIAEYR--KLFANPYWAAEKGLVDD 487 (522)
T ss_dssp TCCGGGTCSEEEECTTCEEESSCHH-------HHHHHHTSSSSSSSSSSSSSSHHHHHHHH--HHHSSSHHHHHTTSSSE
T ss_pred hcccccCCCEEEEeCCCEEEecCHH-------HHHHHHhhhhhhcccCHHHHHHHHHHHHH--HhcCCHHHHHhcCCCcE
Confidence 544 999999999888753332 111111111 1 111111110 01245678999999999
Q ss_pred ccCCChHHHHHHHHHHHHhc
Q 030339 150 YVPAGQAQLKALEIAQEINQ 169 (179)
Q Consensus 150 v~~~~~~~~~a~~~a~~~~~ 169 (179)
|+++.++.+......+.+.+
T Consensus 488 II~p~~tR~~L~~~L~~~~~ 507 (522)
T 1x0u_A 488 VIEPKDTRRVIVAGLEMLKT 507 (522)
T ss_dssp ECCGGGHHHHHHHHHHHHTT
T ss_pred eECHHHHHHHHHHHHHHHhh
Confidence 99998888777666666543
|
| >1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4 | Back alignment and structure |
|---|
Probab=98.01 E-value=8.6e-05 Score=62.70 Aligned_cols=147 Identities=12% Similarity=0.106 Sum_probs=88.7
Q ss_pred HHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHHHH
Q 030339 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMA 84 (179)
Q Consensus 5 l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~ 84 (179)
..+.++.++.. .+-+|.|.-. ..|..|.+- +.......+.+++..+.+.+.|+|+.|-|.+.|||+.-.
T Consensus 354 aar~i~~a~~~-~~Plv~lvDt--pG~~~G~~~--------E~~g~~~~~A~~~~a~~~~~vP~isvI~g~~~gGg~~am 422 (527)
T 1vrg_A 354 AARFIRFLDAF-NIPILTFVDT--PGYLPGVAQ--------EHGGIIRHGAKLLYAYSEATVPKITVILRKAYGGAYIAM 422 (527)
T ss_dssp HHHHHHHHHHT-TCCEEEEEEE--CCBCCCHHH--------HHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHT
T ss_pred HHHHHHHHhhc-CCCeEEEecC--CCCcCchhh--------HHhHHHHHHHHHHHHHhcCCCCEEEEEeCCcccHHHHHh
Confidence 34455555444 3334444332 235544422 222344556677778888999999999999998886544
Q ss_pred hh----cCEEEEcCCceeecccccccccCCcchhhhhhc-cc----CHHHHHH-HHh--cCCCcCHHHHHhcCccccccC
Q 030339 85 LA----CDLRICGEAALLGLPETGLAIIPGAGGTQRLPR-LV----GKSVAKD-IIF--TGRKVSGKDAMSLGLVNYYVP 152 (179)
Q Consensus 85 ~~----~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~-~~----g~~~a~~-l~l--~g~~~~a~~a~~~Glv~~v~~ 152 (179)
.. +|+++|.|++.++ +.++.+....+-+ .+ .....++ +.- .-..-++..+.+.|+||.|++
T Consensus 423 ~~~~~~~d~~~a~p~a~~~-------Vm~pegaa~Il~r~~~~~~~d~~~~~~~~~~~y~~~~~~p~~~~~~g~iD~II~ 495 (527)
T 1vrg_A 423 GSKHLGADMVLAWPSAEIA-------VMGPEGAANIIFKREIEASSNPEETRRKLIEEYKQQFANPYIAASRGYVDMVID 495 (527)
T ss_dssp TCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTHHHHHHSSCHHHHHHHHHHHHHHHTSSHHHHHHTTSSSEECC
T ss_pred cCCCCCCCEEEEcCCCeEE-------ecCHHHHHHHHhhhhhhcccCHHHHHHHHHHHHHHhhCCHHHHHHcCCCCeeeC
Confidence 33 8999999998887 3333333333322 11 1111111 221 111356788999999999999
Q ss_pred CChHHHHHHHHHHHHhc
Q 030339 153 AGQAQLKALEIAQEINQ 169 (179)
Q Consensus 153 ~~~~~~~a~~~a~~~~~ 169 (179)
+.+.........+.+.+
T Consensus 496 p~~tR~~l~~~L~~l~~ 512 (527)
T 1vrg_A 496 PRETRKYIMRALEVCET 512 (527)
T ss_dssp GGGHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 88887776666666543
|
| >1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4 | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00017 Score=61.55 Aligned_cols=147 Identities=16% Similarity=0.128 Sum_probs=93.7
Q ss_pred HHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHHHHh
Q 030339 6 KHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMAL 85 (179)
Q Consensus 6 ~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~ 85 (179)
.+.++.++.. ++-+|.|.-. ..|..|.+- +.....+...+++..+.+.+.|+|+.|-|.++|||+ ++|
T Consensus 396 arfi~~c~~~-~iPlv~lvDt--pGf~~G~~~--------E~~Gi~~~gA~~~~a~a~a~vP~itvI~g~~~Ggg~-~am 463 (587)
T 1pix_A 396 NEFVTLCARD-RLPIVWIQDT--TGIDVGNDA--------EKAELLGLGQSLIYSIQTSHIPQFEITLRKGTAAAH-YVL 463 (587)
T ss_dssp HHHHHHHHHT-TCCEEEEECC--CEECCSHHH--------HHTTHHHHHHHHHHHHHTCCCCEEEEECSEEETTHH-HHT
T ss_pred HHHHHHhhcC-CCCeEEEecC--CCCCCcHHH--------HHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCccHHH-HHh
Confidence 3445544443 4446665543 456666532 333455677788899999999999999999998884 455
Q ss_pred h-----c--CEEEEcCCceeecccccccccCCcchhhhhhc-ccCH---------HHH---HHHHh-cCCCcCHHHHHhc
Q 030339 86 A-----C--DLRICGEAALLGLPETGLAIIPGAGGTQRLPR-LVGK---------SVA---KDIIF-TGRKVSGKDAMSL 144 (179)
Q Consensus 86 ~-----~--D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~-~~g~---------~~a---~~l~l-~g~~~~a~~a~~~ 144 (179)
+ + |++++.+++.++. .++.+....+.+ .... ..+ .++.- --+..++..+.+.
T Consensus 464 ~~~~~~~~~d~~~a~p~A~~~V-------m~pegaa~Il~r~~~~~~~~~g~~~~~~~~~~~~~~~~y~~~~~p~~aa~~ 536 (587)
T 1pix_A 464 GGPQGNDTNAFSIGTAATEIAV-------MNGETAATAMYSRRLAKDRKAGKDLQPTIDKMNNLIQAFYTKSRPKVCAEL 536 (587)
T ss_dssp TCTTCTTTEEEEEECTTCEEES-------SCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred cCcccCcccceeeeccCCeEec-------CCHHHHHHHHHhhhhhhhhhcCCChHHHHHHHHHHHHHHHHhCCHHHHHhc
Confidence 4 5 9999999998883 322333322221 1100 000 11110 0114788999999
Q ss_pred CccccccCCChHHHHHHHHHHHHhccC
Q 030339 145 GLVNYYVPAGQAQLKALEIAQEINQKV 171 (179)
Q Consensus 145 Glv~~v~~~~~~~~~a~~~a~~~~~~~ 171 (179)
|+||.|+++.+.........+.+.++|
T Consensus 537 g~iD~VI~p~~tR~~l~~~L~~~~~~~ 563 (587)
T 1pix_A 537 GLVDEIVDMNKIRGYVEAFTEAAYQNP 563 (587)
T ss_dssp TSSSEECCTTTHHHHHHHHHHHHTTSC
T ss_pred CCCccccCHHHHHHHHHHHHHHHhcCC
Confidence 999999999888877777777766655
|
| >1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00019 Score=60.50 Aligned_cols=146 Identities=13% Similarity=0.082 Sum_probs=89.0
Q ss_pred HHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHHHHh
Q 030339 6 KHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMAL 85 (179)
Q Consensus 6 ~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~ 85 (179)
.+.++.++.. ++-+|.|.-. ..|..|.+- +.....+...+++..+.+...|+|+.|-|.++|||+.-..
T Consensus 351 ar~i~~~~~~-~iPlv~lvDt--pGf~~G~~~--------E~~Gi~~~~A~~l~a~a~~~vP~itvI~g~~~Ggg~~am~ 419 (523)
T 1on3_A 351 AEFVNFCDSF-NIPLVQLVDV--PGFLPGVQQ--------EYGGIIRHGAKMLYAYSEATVPKITVVLRKAYGGSYLAMC 419 (523)
T ss_dssp HHHHHHHHHT-TCCEEEEEEE--CCBCCCHHH--------HHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHTTT
T ss_pred HHHHHHHHhc-CCCeEEEEeC--CCcCcchHH--------HHhhHHHHHHHHHHHHhcCCCCEEEEEeCCcccHHHHHhc
Confidence 4445555443 3334444333 335555532 2233455567778888899999999999999998876554
Q ss_pred h----cCEEEEcCCceeecccccccccCCcchhhhhhcc-c----CHHHHHH-HHh--cCCCcCHHHHHhcCccccccCC
Q 030339 86 A----CDLRICGEAALLGLPETGLAIIPGAGGTQRLPRL-V----GKSVAKD-IIF--TGRKVSGKDAMSLGLVNYYVPA 153 (179)
Q Consensus 86 ~----~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~-~----g~~~a~~-l~l--~g~~~~a~~a~~~Glv~~v~~~ 153 (179)
. +|+++|.|++.++ +.++.+....+.+. + .....++ +.- .-..-++..+.+.|+||.|+++
T Consensus 420 ~~~~~~d~~~a~p~a~~~-------Vm~pegaa~Il~r~~~~~~~d~~~~~~~~~~~y~~~~~~p~~~a~~g~iD~II~p 492 (523)
T 1on3_A 420 NRDLGADAVYAWPSAEIA-------VMGAEGAANVIFRKEIKAADDPDAMRAEKIEEYQNAFNTPYVAAARGQVDDVIDP 492 (523)
T ss_dssp CGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTHHHHHHSSCHHHHHHHHHHHHHHHHSSHHHHHHTTSSSEECCG
T ss_pred ccCCCCCEEEEcCCCeEE-------ecCHHHHHHHHhhhhhhcccCHHHHHHHHHHHHHHhhCCHHHHHhcCCCCEeeCH
Confidence 4 8999999998887 33333333333221 1 1111111 221 1112566889999999999998
Q ss_pred ChHHHHHHHHHHHHhc
Q 030339 154 GQAQLKALEIAQEINQ 169 (179)
Q Consensus 154 ~~~~~~a~~~a~~~~~ 169 (179)
.+.........+.+.+
T Consensus 493 ~~tR~~l~~~L~~l~~ 508 (523)
T 1on3_A 493 ADTRRKIASALEMYAT 508 (523)
T ss_dssp GGHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8887776666665543
|
| >2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00033 Score=59.40 Aligned_cols=147 Identities=16% Similarity=0.167 Sum_probs=87.1
Q ss_pred HHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHHHH
Q 030339 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMA 84 (179)
Q Consensus 5 l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~ 84 (179)
..+.++.++.. .+-+|.|--. ..|..|.+- +.....+...+++..+.+...|+|+.|-|.++|||+.-.
T Consensus 371 aar~i~~a~~~-~iPlv~lvDt--~Gf~~G~~~--------E~~Gi~~~ga~~l~a~~~~~VP~isvI~g~~~Ggg~~am 439 (548)
T 2bzr_A 371 AARFVRTCDCF-NIPIVMLVDV--PGFLPGTDQ--------EYNGIIRRGAKLLYAYGEATVPKITVITRKAYGGAYCVM 439 (548)
T ss_dssp HHHHHHHHHHT-TCCEEEEEEE--CCBCCCHHH--------HHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHT
T ss_pred HHHHHHHHHhc-CCCEEEEeec--cCCCCChHH--------HHhhHHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHh
Confidence 34455555544 3334444332 336555533 222334455667777888999999999999999886554
Q ss_pred h----hcCEEEEcCCceeecccccccccCCcchhhhhhcc-cCH--------HHHHH-HHhc--CCCcCHHHHHhcCccc
Q 030339 85 L----ACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRL-VGK--------SVAKD-IIFT--GRKVSGKDAMSLGLVN 148 (179)
Q Consensus 85 ~----~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~-~g~--------~~a~~-l~l~--g~~~~a~~a~~~Glv~ 148 (179)
. .+|+++|+|++.++. ..+.+....+.+. +-. ...++ +.-. -..-++..+.+.|+||
T Consensus 440 ~~~~~~~d~~~awp~a~i~V-------mgpegaa~Il~r~~~~~~~~~g~~~~~~~~~~~~~y~~~~~~p~~~a~~g~iD 512 (548)
T 2bzr_A 440 GSKDMGCDVNLAWPTAQIAV-------MGASGAVGFVYRQQLAEAAANGEDIDKLRLRLQQEYEDTLVNPYVAAERGYVG 512 (548)
T ss_dssp TCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTCCC----------CHHHHHHHHHHHHHHHSBSHHHHHTTSSS
T ss_pred ccccCCCCEEEEcCCCEEEe-------cCHHHHHHHHhhhHHhhhhcccccHHHHHHHHHHHHHHhhCCHHHHHhcCCCc
Confidence 3 399999999988873 3223333333221 110 01111 2210 0124557799999999
Q ss_pred cccCCChHHHHHHHHHHHHhc
Q 030339 149 YYVPAGQAQLKALEIAQEINQ 169 (179)
Q Consensus 149 ~v~~~~~~~~~a~~~a~~~~~ 169 (179)
.|+++.+.........+.+.+
T Consensus 513 ~II~p~~tR~~l~~~L~~l~~ 533 (548)
T 2bzr_A 513 AVIPPSHTRGYIGTALRLLER 533 (548)
T ss_dssp EECCGGGHHHHHHHHHHHTTT
T ss_pred eeeCHHHHHHHHHHHHHHHhc
Confidence 999988877666555555443
|
| >3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00021 Score=60.53 Aligned_cols=86 Identities=26% Similarity=0.306 Sum_probs=61.0
Q ss_pred HHhcCCCcEEEEEcccccchhHHHHhhcCEEEEcCC-ceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCH
Q 030339 60 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEA-ALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSG 138 (179)
Q Consensus 60 ~~~~~~kp~ia~v~G~a~g~G~~l~~~~D~~va~~~-a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a 138 (179)
.+.....|+|+++.|.|.|||......||++++.++ +.+++. |++..+ ..+|+.+++
T Consensus 192 ~ls~~giP~Isvv~G~~~GGga~~~a~~d~vim~e~~a~i~~a--------------------GP~vik--~~~ge~~~~ 249 (555)
T 3u9r_B 192 NMSARGIPQIAVVMGSCTAGGAYVPAMSDETVMVREQATIFLA--------------------GPPLVK--AATGEVVSA 249 (555)
T ss_dssp HHHHTTCCEEEEECSCCBGGGGHHHHTSSEEEEETTTCBCBSS--------------------CHHHHH--HHHCCCCCH
T ss_pred HHhcCCCCEEEEEecCCCccHHHHHHhCCceEEecCCceEEEc--------------------cHHHHH--HHhcCccCh
Confidence 455678999999999999999999999999887764 544431 222221 146889999
Q ss_pred HHH-------HhcCccccccCCCh-HHHHHHHHHHHH
Q 030339 139 KDA-------MSLGLVNYYVPAGQ-AQLKALEIAQEI 167 (179)
Q Consensus 139 ~~a-------~~~Glv~~v~~~~~-~~~~a~~~a~~~ 167 (179)
++. .+.|++|.++++++ ....++++...+
T Consensus 250 e~LGGa~~h~~~sGv~d~v~~de~~a~~~~r~~ls~L 286 (555)
T 3u9r_B 250 EELGGADVHCKVSGVADHYAEDDDHALAIARRCVANL 286 (555)
T ss_dssp HHHHBHHHHHHTTCSCSEEESSHHHHHHHHHHHHHTS
T ss_pred hhccchhhhhhccCceeEEeCCHHHHHHHHHHHHHhC
Confidence 888 78999999997643 233344444433
|
| >1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4 | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0011 Score=55.99 Aligned_cols=83 Identities=20% Similarity=0.278 Sum_probs=56.6
Q ss_pred cCCCcEEEEEcccccchhHHHHhhcCEEEEcCC-ceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHH--
Q 030339 63 ALPIPTIAVIDGAALGGGLEMALACDLRICGEA-ALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGK-- 139 (179)
Q Consensus 63 ~~~kp~ia~v~G~a~g~G~~l~~~~D~~va~~~-a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~-- 139 (179)
.-..|+|+++.|+|.||+......||++|+.++ +.+++. |++.... .+|+.++.+
T Consensus 168 s~~iP~Isvv~Gp~~GG~a~s~al~D~vi~~~~~a~i~~a--------------------GP~vi~~--~~ge~v~~e~l 225 (527)
T 1vrg_A 168 SGVVPQITVIAGPCAGGAVYSPALTDFIVMVDQTARMFIT--------------------GPNVIKA--VTGEEISQEDL 225 (527)
T ss_dssp TTTSCEEEEEEEEEBGGGGHHHHHSSEEEEETTTCBCBSS--------------------CHHHHHH--HHCCCCCHHHH
T ss_pred CCCCCEEEEEeCCCchHHHHHHHcCCeEEEecCceEEEec--------------------CHHHHHH--HhCCCCCcccc
Confidence 456999999999999999888889999999998 665432 2222111 245566543
Q ss_pred ---HHH--hcCccccccCCC-hHHHHHHHHHHHH
Q 030339 140 ---DAM--SLGLVNYYVPAG-QAQLKALEIAQEI 167 (179)
Q Consensus 140 ---~a~--~~Glv~~v~~~~-~~~~~a~~~a~~~ 167 (179)
+.+ +.|++|.+++++ +..+.+.++...+
T Consensus 226 ggae~~~~~~G~vd~vv~d~~~~~~~~~~~Ls~l 259 (527)
T 1vrg_A 226 GGAMVHNQKSGNAHFLADNDEKAMSLVRTLLSYL 259 (527)
T ss_dssp HBHHHHHHTSCCCSEEESSHHHHHHHHHHHHTTS
T ss_pred ccHHHHhhcccceEEEecCHHHHHHHHHHHHHhc
Confidence 333 689999999853 3555555544433
|
| >3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00015 Score=61.20 Aligned_cols=111 Identities=15% Similarity=0.166 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHHHHhh----cCEEEEcCCceeecccccccccCCcchhhhh-hcccC
Q 030339 48 HFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALA----CDLRICGEAALLGLPETGLAIIPGAGGTQRL-PRLVG 122 (179)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~----~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l-~~~~g 122 (179)
....+...+++..+.+.+.|+|+.|-|.++|||+.-... +|+++|+|++.++. .++.+....+ .+-+.
T Consensus 394 ~Gi~~~gAk~l~a~a~a~VP~itvI~g~~~Ggg~~am~~~~~~~d~~~awp~A~i~V-------m~pegaa~Il~r~~~~ 466 (531)
T 3n6r_B 394 GGVIKHGAKLLYAYGEATVPMVTVITRKAYGGAYVVMSSKHLRADFNYAWPTAEVAV-------MGAKGATEIIHRGDLG 466 (531)
T ss_dssp TTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHCCTTTT
T ss_pred hhHHHHHHHHHHHHHhCCCCEEEEEcCCccchhhhhccCccCCCCeEEEcCCceEec-------CCHHHHHHHHhccccc
Confidence 344566778888999999999999999999988654443 99999999998874 2222222222 21111
Q ss_pred ---H--HHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHHHHHHHHHH
Q 030339 123 ---K--SVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEI 167 (179)
Q Consensus 123 ---~--~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~a~~~a~~~ 167 (179)
. ....+. .-+.-++..|.+.|+||.|+++.+.........+.+
T Consensus 467 ~~~~~~~~~~~y--~~~~~~p~~aa~~~~vD~vIdP~~TR~~l~~~l~~~ 514 (531)
T 3n6r_B 467 DPEKIAQHTADY--EERFANPFVASERGFVDEVIQPRSTRKRVARAFASL 514 (531)
T ss_dssp STTHHHHHHHHH--HHHHSSSHHHHHHTSSSEECCGGGHHHHHHHHHHTT
T ss_pred chhHHHHHHHHH--HHHhcCHHHHHhcCccCcccCHHHHHHHHHHHHHHH
Confidence 0 111111 112245667889999999999988876654444433
|
| >3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00024 Score=60.00 Aligned_cols=113 Identities=15% Similarity=0.225 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHHHHhh-----cCEEEEcCCceeecccccccccCCcchhhhh-hccc
Q 030339 48 HFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALA-----CDLRICGEAALLGLPETGLAIIPGAGGTQRL-PRLV 121 (179)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~-----~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l-~~~~ 121 (179)
....+...+++..+.+.+.|+|+.|-|.++|||+ ++|+ +|+++|++++.++. .++.+....+ .+.+
T Consensus 388 ~gi~~~~Ak~l~a~a~a~vP~itvI~g~~~GGa~-~am~~~~~~~d~~~awp~a~~~V-------m~~egaa~il~r~~~ 459 (530)
T 3iav_A 388 DGIIRRGAKLIFAYAEATVPLITVITRKAFGGAY-VVMGSKHLGADLNLAWPTAQIAV-------MGAQGAVNILHRRTI 459 (530)
T ss_dssp TTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHH-HHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTSTTT
T ss_pred hhHHHHHHHHHHHHHhCCCCEEEEEeCCcchHHH-HHhcCCCCCCCEEEEcCCceEec-------CCHHHHHHHHhhhhh
Confidence 4455667788888999999999999999998765 4554 79999999998874 2222222222 2111
Q ss_pred C------HHHHHHHHhc--CCCcCHHHHHhcCccccccCCChHHHHHHHHHHHHh
Q 030339 122 G------KSVAKDIIFT--GRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEIN 168 (179)
Q Consensus 122 g------~~~a~~l~l~--g~~~~a~~a~~~Glv~~v~~~~~~~~~a~~~a~~~~ 168 (179)
- ...-.++.-. -+.-++..|.+.|+||.|+++.+.........+.+.
T Consensus 460 ~~~~~d~~~~~~~~~~~y~~~~~~p~~aa~~~~vD~VIdP~~TR~~l~~~l~~~~ 514 (530)
T 3iav_A 460 ADAGDDAEATRARLIQEYEDALLNPYTAAERGYVDAVIMPSDTRRHIVRGLRQLR 514 (530)
T ss_dssp STTCTTCHHHHHHHHHHHHHHHSSSHHHHHTTSSSEECCGGGHHHHHHHHHHHHT
T ss_pred hhcccCHHHHHHHHHHHHHHhcCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHh
Confidence 1 1111122211 112367788899999999999888766555444443
|
| >3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0033 Score=53.29 Aligned_cols=148 Identities=13% Similarity=0.062 Sum_probs=87.8
Q ss_pred HHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHHHH
Q 030339 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMA 84 (179)
Q Consensus 5 l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~ 84 (179)
..+.++.++.. ++-+|.|.-. ..|..|.+- +.....+...+++..+.+.+.|+|+.|-|.++|+|..-.
T Consensus 376 aarfi~~c~~~-~iPlv~lvDt--pGf~~G~~~--------E~~Gi~~~gAk~~~a~~~a~vP~itvi~g~~~Ggg~~am 444 (555)
T 3u9r_B 376 GAHFIELACQR-GIPLLFLQNI--TGFMVGQKY--------EAGGIAKHGAKLVTAVACARVPKFTVLIGGSFGAGNYGM 444 (555)
T ss_dssp HHHHHHHHHHH-TCCEEEEEEE--CCBCCSHHH--------HHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEETTHHHHT
T ss_pred HHHHHHHHhcC-CCCEEEEecC--cCCCCCHHH--------HHHHHHHHHHHHHHHHHhCCCCEEEEEeCCccchhhHhh
Confidence 34445555443 3446666544 236655533 223345567778888999999999999999988864433
Q ss_pred h----hcCEEEEcCCceeecccccccccCCcchhhhhh---cc--------cCHH--H-HHH-HHhc-CCCcCHHHHHhc
Q 030339 85 L----ACDLRICGEAALLGLPETGLAIIPGAGGTQRLP---RL--------VGKS--V-AKD-IIFT-GRKVSGKDAMSL 144 (179)
Q Consensus 85 ~----~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~---~~--------~g~~--~-a~~-l~l~-g~~~~a~~a~~~ 144 (179)
. .+|+++++|++.++.- .+.+....+. +. .... . .++ +.-. -+..++-.+.+.
T Consensus 445 ~~~~~~~d~~~a~p~A~i~Vm-------gpegaa~il~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~y~~~~~p~~aa~r 517 (555)
T 3u9r_B 445 CGRAYDPRFLWMWPNARIGVM-------GGEQAAGVLAQVKREQAERAGQQLGVEEEAKIKAPILEQYEHQGHPYYSSAR 517 (555)
T ss_dssp TCGGGCCSEEEECTTCEEESS-------CHHHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHSHHHHHHT
T ss_pred cCccCCCCeEEEcCCcEEEcC-------CHHHHHHHHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHHhCCHHHHhhc
Confidence 2 3799999999988842 2222332221 10 0110 0 001 1100 112477788899
Q ss_pred CccccccCCChHHHHHHHHHHHHhcc
Q 030339 145 GLVNYYVPAGQAQLKALEIAQEINQK 170 (179)
Q Consensus 145 Glv~~v~~~~~~~~~a~~~a~~~~~~ 170 (179)
|+||.|+++.+.........+.+.++
T Consensus 518 ~~vD~vIdP~~TR~~l~~~l~~~~~~ 543 (555)
T 3u9r_B 518 LWDDGVIDPAQTREVLALALSAALNA 543 (555)
T ss_dssp TSSSCBCCGGGHHHHHHHHHHHHTTS
T ss_pred cccCcccChHHHHHHHHHHHHHHhcC
Confidence 99999999988877655555444443
|
| >3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0014 Score=55.90 Aligned_cols=108 Identities=13% Similarity=0.075 Sum_probs=63.0
Q ss_pred HHhcCCCcEEEEEcccccchhHHHHhhcCEEEEcCCceeecccccc--cccCCcchhhhhhcccCHHHHHHHHhcCCCcC
Q 030339 60 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGL--AIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVS 137 (179)
Q Consensus 60 ~~~~~~kp~ia~v~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~--G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~ 137 (179)
.+.....|+|+++.|.|.|||...++++|++++.+++.+++...++ |+-|.+.....-...+......+-..+.+.+-
T Consensus 177 ~ls~~~iP~Isvv~Gp~~gGgAy~a~~~~vim~~~~a~i~~aGP~vI~~~~p~g~~~~~~~~~~~~~~~ge~~vs~eeLG 256 (588)
T 3gf3_A 177 ELNQLGIPVIVGIYGTNPAGGGYHSISPTILIAHQDANMAVGGAGILSGMNPKGYIDDEAAEQIIAAQIENSKLKVPAPG 256 (588)
T ss_dssp HHHHTTCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEESSCCC---------------CHHHHHHHHHHHHTTCCCTT
T ss_pred HHhcCCCCEEEEEeCCCCchhhhHhhCCeEEEEECCcEEEecChhhhcccCccccccccchhhhhhhhccccccChhhcc
Confidence 3456789999999999999988778889999999999888755432 22121111000000000111111113666777
Q ss_pred HHHHH--hcCccccccCCCh-HHHHHHHHHHHH
Q 030339 138 GKDAM--SLGLVNYYVPAGQ-AQLKALEIAQEI 167 (179)
Q Consensus 138 a~~a~--~~Glv~~v~~~~~-~~~~a~~~a~~~ 167 (179)
+.+.+ ..|++|.++++++ ..+.++++..-+
T Consensus 257 Ga~~h~~~sGv~d~~a~de~~al~~~r~~ls~L 289 (588)
T 3gf3_A 257 SVPIHYDETGFFREVYQNDLGVIDGIKKYISYL 289 (588)
T ss_dssp BHHHHTTTSCCSCEEESSHHHHHHHHHHHHHTS
T ss_pred chhhhccccccceEEeCCHHHHHHHHHHHHHhC
Confidence 77777 5899999997653 344444444433
|
| >3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00064 Score=58.01 Aligned_cols=117 Identities=15% Similarity=0.103 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHHHHhhc-------CEEEEcCCceeecccccccccCCcchhhh-hh
Q 030339 47 IHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALAC-------DLRICGEAALLGLPETGLAIIPGAGGTQR-LP 118 (179)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~-------D~~va~~~a~~~~p~~~~G~~p~~~~~~~-l~ 118 (179)
.....+...+++..+.+.+.|+|+.|-|.++|||+ ++|++ |+++|++++.++. .++.+.... +.
T Consensus 428 ~~Gi~~~gAk~l~a~a~a~VP~itvI~g~~~Ggg~-~am~~~~~~~~~~~~~awp~A~~sV-------m~pEgaa~Il~~ 499 (588)
T 3gf3_A 428 KAELLGLGQSLIYSIENSKLPSLEITIRKASAAAH-YVLGGPQGNNTNVFSIGTGACEYYV-------MPGETAANAMYS 499 (588)
T ss_dssp HTTHHHHHHHHHHHHHHHCSCEEEEESSEEETTHH-HHTTCTTCTTTEEEEEECTTCEEES-------SCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCCccHHHH-HHhcccccCCccceEEECCCceEEe-------CCHHHHHHHHhh
Confidence 34456667788899999999999999999988875 44443 3888888888873 322223222 22
Q ss_pred cccC----------H--HHHHHHHh-cCCCcCHHHHHhcCccccccCCChHHHHHHHHHHHHhccC
Q 030339 119 RLVG----------K--SVAKDIIF-TGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKV 171 (179)
Q Consensus 119 ~~~g----------~--~~a~~l~l-~g~~~~a~~a~~~Glv~~v~~~~~~~~~a~~~a~~~~~~~ 171 (179)
+.+. . ....++.- --+..++..|.+.|+||.|+++.+.......+.+...++|
T Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~p~~aA~r~~vD~VIdP~~TR~~l~~~~~~~~~~p 565 (588)
T 3gf3_A 500 RKLVKAKKAGEDLQPIIGKMNDMIQMYTDKSRPKYCTEKGMVDEIVDMTEVRPYIQAFTEAAYQNP 565 (588)
T ss_dssp HHHHHC-------CHHHHHHHHHHHHHHHTTSHHHHHHTTSSSEECCGGGHHHHHHHHHHHHTTSC
T ss_pred hHHhhhhccccccchHHHHHHHHHHHHHHhCCHHHHHhcCCCCeeeCHHHHHHHHHHHHHHHHcCC
Confidence 2111 0 00011111 0113578889999999999999999888777777666655
|
| >3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0015 Score=57.02 Aligned_cols=36 Identities=19% Similarity=0.081 Sum_probs=32.5
Q ss_pred CCCcEEEEEcccccchhHHHHhhcCEEEEcCCceee
Q 030339 64 LPIPTIAVIDGAALGGGLEMALACDLRICGEAALLG 99 (179)
Q Consensus 64 ~~kp~ia~v~G~a~g~G~~l~~~~D~~va~~~a~~~ 99 (179)
...|+|++|.|.|.|||..+...||++|+.+++.+.
T Consensus 245 ~~IPqIsvV~G~c~GGgAY~paL~D~vImv~~s~if 280 (758)
T 3k8x_A 245 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPII 280 (758)
T ss_dssp TTSCEEEEECSCEETHHHHHHHHTCEEEEETTCCEE
T ss_pred cCCCEEEEEccCCchHHHHHHhhCCEEEEECCceEE
Confidence 467999999999999999999999999999987444
|
| >2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.005 Score=54.10 Aligned_cols=38 Identities=26% Similarity=0.147 Sum_probs=34.0
Q ss_pred CCCcEEEEEcccccchhHHHHhhcCEEEEcCCceeecc
Q 030339 64 LPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLP 101 (179)
Q Consensus 64 ~~kp~ia~v~G~a~g~G~~l~~~~D~~va~~~a~~~~p 101 (179)
...|+|+.|.|.|.|||..+...||++|+.+++.+.+.
T Consensus 258 ~~iP~IsvV~G~~~GGgAy~~~lgD~vI~~~~a~i~lt 295 (793)
T 2x24_A 258 DEIVTISMVSCRALGIGAYLVRLGQRVIQVENSHIILT 295 (793)
T ss_dssp HHSCEEEEECSEEETHHHHHHHHTCCEEEETTCEEESS
T ss_pred CCCCEEEEEecCCchHHHHHHhhCCeEEEeccccEEec
Confidence 36899999999999999999999999999998766543
|
| >2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.028 Score=49.48 Aligned_cols=55 Identities=9% Similarity=-0.011 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHHHhcCCCcEEEEE--cccccchhHHHH---hhcCE--EEEcCCceeec
Q 030339 46 EIHFYVNTLRSTFSFLEALPIPTIAVI--DGAALGGGLEMA---LACDL--RICGEAALLGL 100 (179)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~kp~ia~v--~G~a~g~G~~l~---~~~D~--~va~~~a~~~~ 100 (179)
+.....+...+++..+.+++.|+|+.| .|.+.||++... +..|+ ++|.|++.++.
T Consensus 502 E~~Gi~~~gAkll~A~a~a~VP~itvI~r~Ge~~GGa~~~~~~~~~~d~~ev~Awp~A~~~V 563 (793)
T 2x24_A 502 MYDQVLKFGAYIVDGLRKYRQPVLIYIPPYAEVRGGSWAVMDTSINPLCIEMYADRESRASV 563 (793)
T ss_dssp HHTTHHHHHHHHHHHHHTCCSCEEEEECTTCEEEHHHHHTTCGGGSTTTEEEEEETTCEEES
T ss_pred HHhhHHHHHHHHHHHHHhcCCCEEEEEecCCcccchhHHhhhcccCccHHHHhhhccCEEEe
Confidence 333456677788999999999999999 888876654322 34676 67777777764
|
| >3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A | Back alignment and structure |
|---|
Probab=93.91 E-value=0.18 Score=44.11 Aligned_cols=84 Identities=15% Similarity=0.181 Sum_probs=57.3
Q ss_pred HHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEc--ccccchhHHH
Q 030339 6 KHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVID--GAALGGGLEM 83 (179)
Q Consensus 6 ~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~--G~a~g~G~~l 83 (179)
.+.++.++...++-+|.|.-. ..|..|.+- +.....+...+++..+.+++.|+|+.|- |.+.||++ +
T Consensus 458 ArfI~lcd~~f~iPLv~LvDt--pGf~~G~~a--------E~~Gi~k~gAkll~A~a~a~VP~itVI~RkGe~~GGA~-~ 526 (758)
T 3k8x_A 458 AQAINDFNNGEQLPMMILANW--RGFSGGQRD--------MFNEVLKYGSFIVDALVDYKQPIIIYIPPTGELRGGSW-V 526 (758)
T ss_dssp HHHHHHHHHTSCCCEEECCCC--CEECCSHHH--------HHTTHHHHHHHHHHHHHTCCSCEEEEECTTCEEETHHH-H
T ss_pred HHHHHHhhhccCCCEEEEecC--CCCCCCHHH--------HHccHHHHHHHHHHHHHhCCCCEEEEEecCCccchHHH-H
Confidence 345555555234455555433 457766632 3344566677889999999999999998 89988776 5
Q ss_pred Hhh----cCE--EEEcCCceeec
Q 030339 84 ALA----CDL--RICGEAALLGL 100 (179)
Q Consensus 84 ~~~----~D~--~va~~~a~~~~ 100 (179)
++. +|+ ++|.+++.++.
T Consensus 527 am~~~~~ad~~~v~Awp~A~isV 549 (758)
T 3k8x_A 527 VVDPTINADQMEMYADVNARAGV 549 (758)
T ss_dssp TTCGGGSTTTEEEEEETTCEEES
T ss_pred HhCcccCCCHHHHhcCCCCEEEc
Confidence 554 566 88888887775
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=88.75 E-value=1.3 Score=34.25 Aligned_cols=53 Identities=13% Similarity=0.156 Sum_probs=35.6
Q ss_pred HHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEccccc
Q 030339 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 77 (179)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~ 77 (179)
.+.+.|+.+.+||+.++|++-+++.+ |- + +. .....+. ..+||+|+..-|..-
T Consensus 186 ~~~d~l~~~~~D~~t~~I~l~~E~~~------~~-------~---~~---~~~~~~~--~~~KPVv~~k~G~~~ 238 (288)
T 1oi7_A 186 TFKDLLPLFNEDPETEAVVLIGEIGG------SD-------E---EE---AAAWVKD--HMKKPVVGFIGGRSA 238 (288)
T ss_dssp CHHHHHHHHHTCTTCCEEEEEECSSS------SH-------H---HH---HHHHHHH--HCCSCEEEEESCC--
T ss_pred CHHHHHHHHhcCCCCCEEEEEEeeCC------CH-------H---HH---HHHHHHh--cCCCCEEEEEecCCC
Confidence 36788999999999999999998321 11 1 11 1112222 679999999999876
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=88.22 E-value=0.94 Score=35.13 Aligned_cols=52 Identities=15% Similarity=0.298 Sum_probs=34.8
Q ss_pred HHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEccccc
Q 030339 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 77 (179)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~ 77 (179)
.+.+.|+.+++||+.++|++-+++.+ |- + +. ..+.+...+||+|+..-|..-
T Consensus 192 ~~~d~l~~~~~D~~T~~I~l~~E~~g------~~-------~---~~------~~~~~~~~~KPVv~~k~G~~~ 243 (294)
T 2yv1_A 192 RYKEVLDLFEKDDETEAIVMIGEIGG------GA-------E---EE------AAKFIEKMKKPVIGYIAGQSA 243 (294)
T ss_dssp CHHHHHHHHHTCTTCSEEEEEEESSS------SH-------H---HH------HHHHHTTCSSCEEEEEECC--
T ss_pred CHHHHHHHHhcCCCCCEEEEEEeeCC------CH-------H---HH------HHHHHHhCCCCEEEEEecCCC
Confidence 35788999999999999999998321 11 1 10 122222379999999998765
|
| >3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B* | Back alignment and structure |
|---|
Probab=87.06 E-value=1.3 Score=35.09 Aligned_cols=52 Identities=8% Similarity=0.107 Sum_probs=36.8
Q ss_pred HHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHh--cCCCcEEEEEcccccc
Q 030339 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLE--ALPIPTIAVIDGAALG 78 (179)
Q Consensus 5 l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~kp~ia~v~G~a~g 78 (179)
+.+.|+.+++||+.++|++-|+-++ . .+ +++.+.++ +..||+|+..-|..--
T Consensus 211 ~~D~l~~~~~Dp~T~~I~l~gEi~g-~-------------~e--------~~~~~~~r~~~~~KPVV~~kaGrs~~ 264 (334)
T 3mwd_B 211 FMDHVLRYQDTPGVKMIVVLGEIGG-T-------------EE--------YKICRGIKEGRLTKPIVCWCIGTCAT 264 (334)
T ss_dssp HHHHHHHHHTCTTCCEEEEEEESSS-S-------------HH--------HHHHHHHHTTSCCSCEEEEEECTTCC
T ss_pred HHHHHHHHhcCCCCCEEEEEEecCC-h-------------HH--------HHHHHHHHhhcCCCCEEEEEcCCCcc
Confidence 5788999999999999999976211 0 11 22333343 4789999999998754
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=86.36 E-value=1.6 Score=33.64 Aligned_cols=52 Identities=10% Similarity=0.179 Sum_probs=35.6
Q ss_pred HHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEccccc
Q 030339 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 77 (179)
Q Consensus 5 l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~ 77 (179)
+.+.|+.+.+||+.++|++-+++.+ |- + +... .+.+. ..+||+|+..-|..-
T Consensus 187 ~~d~l~~l~~D~~t~~I~l~~E~~~------~~-------~---~~~~---~~~~~--~~~KPVv~~k~G~~~ 238 (288)
T 2nu8_A 187 FIDILEMFEKDPQTEAIVMIGEIGG------SA-------E---EEAA---AYIKE--HVTKPVVGYIAGVTA 238 (288)
T ss_dssp HHHHHHHHHTCTTCCEEEEEEESSS------SH-------H---HHHH---HHHHH--HCCSCEEEEEECTTC
T ss_pred HHHHHHHHhcCCCCCEEEEEEeeCC------CH-------H---HHHH---HHHHh--cCCCCEEEEEeCCCC
Confidence 5788899999999999999988321 11 1 1111 12222 579999999998875
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=85.42 E-value=2.4 Score=32.89 Aligned_cols=54 Identities=17% Similarity=0.264 Sum_probs=36.3
Q ss_pred HHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEccccc
Q 030339 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 77 (179)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~ 77 (179)
.+.+.|+.+.+||+.++|++-+++.+ |- + +. ..++.+. ...+||+|+..-|..-
T Consensus 193 ~~~d~l~~~~~D~~T~~I~l~~E~~~------~~-------~---~~---~~~~~~~-~~~~KPVv~~k~G~s~ 246 (297)
T 2yv2_A 193 SFTEALKLFQEDPQTEALVLIGEIGG------DM-------E---ER---AAEMIKK-GEFTKPVIAYIAGRTA 246 (297)
T ss_dssp CHHHHHHHHHTCTTCSEEEEEECSSS------SH-------H---HH---HHHHHHT-TSCCSCEEEEESCCC-
T ss_pred CHHHHHHHHhcCCCCCEEEEEEeeCC------CH-------H---HH---HHHHHHh-ccCCCCEEEEEeCCCC
Confidence 35788999999999999999998321 11 1 11 1112221 3679999999999765
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=82.54 E-value=2.2 Score=33.26 Aligned_cols=56 Identities=9% Similarity=0.223 Sum_probs=36.9
Q ss_pred HHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEccccc
Q 030339 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 77 (179)
Q Consensus 5 l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~ 77 (179)
+.+.|+.+.+||+.++|++-+++.+ |- +++..++++ ..++ ...+||+|+..-|..-
T Consensus 195 ~~d~l~~~~~Dp~T~~I~l~~E~~g------~~------e~~~~~f~~----~~~~-~~~~KPVv~~k~G~s~ 250 (305)
T 2fp4_A 195 FTDCLEIFLNDPATEGIILIGEIGG------NA------EENAAEFLK----QHNS-GPKSKPVVSFIAGLTA 250 (305)
T ss_dssp HHHHHHHHHHCTTCCEEEEEEESSS------SH------HHHHHHHHH----HHSC-STTCCCEEEEEECTTC
T ss_pred HHHHHHHHhcCCCCcEEEEEEecCC------ch------hhHHHHHHH----HHHH-hcCCCCEEEEEecCCc
Confidence 5788999999999999999998321 10 112233322 1122 3458999999988865
|
| >3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli} | Back alignment and structure |
|---|
Probab=82.29 E-value=3.7 Score=34.14 Aligned_cols=55 Identities=22% Similarity=0.203 Sum_probs=38.1
Q ss_pred HHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
.+.+.|+.+.+||+.++|++-+++. . ++...+ +++..++..||+|+..-|..-.+
T Consensus 158 ~~~D~l~~l~~Dp~T~~I~ly~E~~---~-----------e~~~~~-------f~~~ar~~~KPVV~~k~Grs~~g 212 (480)
T 3dmy_A 158 SALTALEMLSADEKSEVLAFVSKPP---A-----------EAVRLK-------IVNAMKATGKPTVALFLGYTPAV 212 (480)
T ss_dssp HHHHHHHHHHTCTTCCEEEEEESCC---C-----------HHHHHH-------HHHHHHHHCSCEEEEETTCCCSS
T ss_pred CHHHHHHHHhcCCCCCEEEEEEecC---C-----------cHHHHH-------HHHHHHhCCCCEEEEEeCCCCcc
Confidence 4678899999999999999999821 1 111122 23333356899999999987543
|
| >3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.95 E-value=2.5 Score=37.62 Aligned_cols=52 Identities=8% Similarity=0.098 Sum_probs=38.7
Q ss_pred HHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHh--cCCCcEEEEEcccccc
Q 030339 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLE--ALPIPTIAVIDGAALG 78 (179)
Q Consensus 5 l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~kp~ia~v~G~a~g 78 (179)
+.+.|+.+++||+.++|++-++ .+ |- .+.+..+++. +..||+|+..-|.+.-
T Consensus 697 ~~D~L~~l~~Dp~T~~Ivly~E-i~----g~-----------------~f~~aA~~~~~~~~~KPVVa~kaGrsa~ 750 (829)
T 3pff_A 697 FMDHVLRYQDTPGVKMIVVLGE-IG----GT-----------------EEYKICRGIKEGRLTKPIVCWCIGTCAT 750 (829)
T ss_dssp HHHHHHHHHTCTTCCEEEEEEE-SS----SS-----------------HHHHHHHHHHTTSCCSCEEEEEECSSTT
T ss_pred HHHHHHHHhhCCCCCEEEEEEe-cC----ch-----------------HHHHHHHHHHhccCCCCEEEEEecCcCc
Confidence 6788999999999999999987 11 11 1233455555 6899999999998754
|
| >2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 | Back alignment and structure |
|---|
Probab=80.12 E-value=3.2 Score=34.18 Aligned_cols=52 Identities=10% Similarity=0.070 Sum_probs=34.3
Q ss_pred HHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEccccc
Q 030339 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 77 (179)
Q Consensus 5 l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~ 77 (179)
+.+.|+.+.+||+.++|++-+++ |-. ... +.+..+++ +.+||+|+..-|..-
T Consensus 190 ~~d~l~~~~~D~~t~~I~l~~E~---i~~-------------~~~----f~~~a~~~-~~~KPVv~~k~G~~~ 241 (457)
T 2csu_A 190 FAELMEYLADTEEDKAIALYIEG---VRN-------------GKK----FMEVAKRV-TKKKPIIALKAGKSE 241 (457)
T ss_dssp HHHHHHHHTTCSSCCEEEEEESC---CSC-------------HHH----HHHHHHHH-HHHSCEEEEECC---
T ss_pred HHHHHHHHhcCCCCCEEEEEEec---CCC-------------HHH----HHHHHHHh-cCCCCEEEEEcCCCc
Confidence 56889999999999999999983 111 112 22333444 358999999988664
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 179 | ||||
| d1mj3a_ | 260 | c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat | 1e-39 | |
| d1uiya_ | 253 | c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {The | 4e-17 | |
| d1hzda_ | 266 | c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [T | 4e-13 | |
| d1dcia_ | 275 | c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2 | 8e-13 | |
| d1wdka4 | 310 | c.14.1.3 (A:1-310) Fatty oxidation complex alpha s | 4e-07 | |
| d1szoa_ | 249 | c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus | 7e-07 | |
| d1pjha_ | 266 | c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2 | 1e-06 | |
| d1ef8a_ | 261 | c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Esc | 1e-05 | |
| d1q52a_ | 297 | c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacter | 1e-05 | |
| d1nzya_ | 269 | c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Ps | 7e-04 |
| >d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 133 bits (335), Expect = 1e-39
Identities = 58/145 (40%), Positives = 82/145 (56%), Gaps = 2/145 (1%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSF 60
++ L A ET ED + ++ + K F AGAD+K +Q + Y S +
Sbjct: 35 LIEELNQALETFEEDPAVGA-IVLTGGEKAFAAGADIKEMQN-RTFQDCYSGKFLSHWDH 92
Query: 61 LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRL 120
+ + P IA ++G ALGGG E+A+ CD+ GE A G PE L IPGAGGTQRL R
Sbjct: 93 ITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRA 152
Query: 121 VGKSVAKDIIFTGRKVSGKDAMSLG 145
VGKS+A +++ TG ++S +DA G
Sbjct: 153 VGKSLAMEMVLTGDRISAQDAKQAG 177
|
| >d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Thermus thermophilus [TaxId: 274]
Score = 74.4 bits (181), Expect = 4e-17
Identities = 50/180 (27%), Positives = 80/180 (44%), Gaps = 4/180 (2%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTF-- 58
M L A + + D V++ + +++ S
Sbjct: 27 MALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAEENYRHSLSLMRL 86
Query: 59 -SFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRL 117
+ P PT+A ++G A+ GG +ALACDL + E A LG E A + L
Sbjct: 87 FHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVK-IGFVAALVSVIL 145
Query: 118 PRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRI 177
R VG+ AKD++ TGR V ++A +LGLVN P G+A +A +A+E+ + + R+
Sbjct: 146 VRAVGEKAAKDLLLTGRLVEAREAKALGLVNRIAPPGKALEEAKALAEEVAKNAPTSLRL 205
|
| >d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: AUH protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.6 bits (153), Expect = 4e-13
Identities = 76/156 (48%), Positives = 111/156 (71%), Gaps = 1/156 (0%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFS 59
+++ L A + + D ++IRS VP +FCAGADLK +MS SE+ +V+ +R+ +
Sbjct: 34 LIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVIN 93
Query: 60 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPR 119
+ LP+PTIA IDG ALGGGLE+ALACD+R+ +A +GL ET LAIIPG GGTQRLPR
Sbjct: 94 DIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPR 153
Query: 120 LVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 155
+G S+AK++IF+ R + GK+A ++GL+++ + Q
Sbjct: 154 AIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQ 189
|
| >d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 275 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 62.8 bits (151), Expect = 8e-13
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 13/106 (12%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSE------------IH 48
R L F+ IS+DS V++ K+F +G DL + + +
Sbjct: 32 FWRELVECFQKISKDSDCRAVVVSG-AGKMFTSGIDLMDMASDILQPPGDDVARIAWYLR 90
Query: 49 FYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGE 94
++ + TF+ +E P P IA I G +GGG+++ ACD+R C +
Sbjct: 91 DLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQ 136
|
| >d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 310 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Fatty oxidation complex alpha subunit, N-terminal domain species: Pseudomonas fragi [TaxId: 296]
Score = 46.6 bits (109), Expect = 4e-07
Identities = 53/179 (29%), Positives = 82/179 (45%), Gaps = 3/179 (1%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSF 60
L L+ A + I D+S V++ S + ++ +
Sbjct: 36 TLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFVENFKLPDAELIAGNLEANKI 95
Query: 61 LEAL---PIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRL 117
+PT+A I+G ALGGGLEM LA D R+ ++A +GLPE L I PG GGT RL
Sbjct: 96 FSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRL 155
Query: 118 PRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFR 176
PRL+G A + I +G++ +DA+ + V+ V A + AL++ +
Sbjct: 156 PRLIGVDNAVEWIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKA 214
|
| >d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]} Length = 249 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: 6-oxo camphor hydrolase species: Rhodococcus erythropolis [TaxId: 1833]
Score = 45.5 bits (106), Expect = 7e-07
Identities = 32/170 (18%), Positives = 67/170 (39%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSF 60
L + F I+ D VV++ + P +P + + + +
Sbjct: 41 AHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNLGTPHDWDEIIFEGQRLLNN 100
Query: 61 LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRL 120
L ++ +P IA ++G ++ + A P I+PG G P +
Sbjct: 101 LLSIEVPVIAAVNGPVTNAPEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHV 160
Query: 121 VGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQK 170
+G + + + TG+++ + A+ G VN + + +A E+A+ I +K
Sbjct: 161 LGSNRGRYFLLTGQELDARTALDYGAVNEVLSEQELLPRAWELARGIAEK 210
|
| >d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.7 bits (104), Expect = 1e-06
Identities = 24/187 (12%), Positives = 49/187 (26%), Gaps = 14/187 (7%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAG-----------ADLKVLQMSPSEIHF 49
L E + +I+SS K + +
Sbjct: 33 DYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSN 92
Query: 50 YVNTLRSTFSFLEALPIPT-IAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAII 108
+V + A +AL + + L P L +I
Sbjct: 93 FVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLI 152
Query: 109 PGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKAL--EIAQE 166
G T LP G + + + + G ++ + +A ++ +E
Sbjct: 153 TEGGTTVSLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEE 212
Query: 167 INQKVQS 173
+ +KV+
Sbjct: 213 LREKVKG 219
|
| >d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]} Length = 261 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Methylmalonyl CoA decarboxylase species: Escherichia coli [TaxId: 562]
Score = 42.1 bits (97), Expect = 1e-05
Identities = 41/176 (23%), Positives = 80/176 (45%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSF 60
+ L A ++ +++ S KVF AG D+ L + Y + LR
Sbjct: 32 FIDDLMQALSDLNRPEIRCIILRAPSGSKVFSAGHDIHELPSGGRDPLSYDDPLRQITRM 91
Query: 61 LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRL 120
++ P P I++++G+ GG EM ++ DL I + + L + G L R
Sbjct: 92 IQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRD 151
Query: 121 VGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFR 176
G + K++IFT ++ + A+++G++N+ V + + L++A I++K
Sbjct: 152 AGFHIVKELIFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIA 207
|
| >d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Naphthoate synthase MenB species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 42.0 bits (97), Expect = 1e-05
Identities = 15/110 (13%), Positives = 30/110 (27%), Gaps = 18/110 (16%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL------------------QM 42
+ L + VV++ + P G
Sbjct: 48 TVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQYASGDTAD 107
Query: 43 SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRIC 92
+ + + +P I +++G A GGG + + CDL +
Sbjct: 108 TVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLA 157
|
| >d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: 4-Chlorobenzoyl-CoA dehalogenase species: Pseudomonas sp., strain CBS-3 [TaxId: 306]
Score = 36.7 bits (83), Expect = 7e-04
Identities = 36/156 (23%), Positives = 65/156 (41%), Gaps = 7/156 (4%)
Query: 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSF 60
++ + A ED S VMI + G L+ + + + + +
Sbjct: 31 AMQEVTDALNRAEEDDSVGAVMITGAEDAFCA-GFYLREIPLDKGVAGVRDHFRIAALWW 89
Query: 61 ------LEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGT 114
+ + P +A I+G A GGGL ++LA D+ IC ++A + I +
Sbjct: 90 HQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATS 149
Query: 115 QRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYY 150
L R+VG A +++ T R + ++A GLV+
Sbjct: 150 YSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRV 185
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 179 | |||
| d2a7ka1 | 230 | Carbapenem biosynthes protein CarB {Pectobacterium | 100.0 | |
| d1wz8a1 | 263 | Probable enoyl-CoA hydratase TTHA0218 {Thermus the | 100.0 | |
| d1sg4a1 | 249 | Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso | 100.0 | |
| d2f6qa1 | 245 | Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human ( | 100.0 | |
| d2fw2a1 | 258 | Chromodomain protein CDY2A {Human (Homo sapiens) [ | 100.0 | |
| d1mj3a_ | 260 | Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve | 100.0 | |
| d1hzda_ | 266 | AUH protein {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1nzya_ | 269 | 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., | 100.0 | |
| d1wdka4 | 310 | Fatty oxidation complex alpha subunit, N-terminal | 100.0 | |
| d1ef8a_ | 261 | Methylmalonyl CoA decarboxylase {Escherichia coli | 100.0 | |
| d1szoa_ | 249 | 6-oxo camphor hydrolase {Rhodococcus erythropolis | 100.0 | |
| d1uiya_ | 253 | Enoyl-CoA hydratase (crotonase) {Thermus thermophi | 100.0 | |
| d1pjha_ | 266 | Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso | 100.0 | |
| d1dcia_ | 275 | Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso | 100.0 | |
| d1q52a_ | 297 | Naphthoate synthase MenB {Mycobacterium tuberculos | 100.0 | |
| d2cbya1 | 179 | Clp protease, ClpP subunit {Mycobacterium tubercul | 98.84 | |
| d1yg6a1 | 183 | Clp protease, ClpP subunit {Escherichia coli [TaxI | 98.84 | |
| d1y7oa1 | 192 | Clp protease, ClpP subunit {Streptococcus pneumoni | 98.67 | |
| d2f6ia1 | 190 | Clp protease, ClpP subunit {Plasmodium falciparum | 98.65 | |
| d1tg6a1 | 193 | Clp protease, ClpP subunit {Human (Homo sapiens), | 98.63 | |
| d2f9ya1 | 316 | Acetyl-coenzyme A carboxylase carboxyl transferase | 98.27 | |
| d1on3a1 | 253 | Methylmalonyl-CoA carboxyltransferase (transcarbox | 98.18 | |
| d2f9yb1 | 263 | Acetyl-coenzyme A carboxylase carboxyl transferase | 98.12 | |
| d1vrga1 | 251 | Propionyl-CoA carboxylase complex B subunit, PccB | 97.98 | |
| d1xnya1 | 258 | Propionyl-CoA carboxylase complex B subunit, PccB | 97.96 | |
| d2a7sa1 | 258 | Propionyl-CoA carboxylase complex B subunit, PccB | 97.9 | |
| d1vrga2 | 264 | Propionyl-CoA carboxylase complex B subunit, PccB | 97.75 | |
| d2a7sa2 | 271 | Propionyl-CoA carboxylase complex B subunit, PccB | 97.74 | |
| d1pixa2 | 287 | Glutaconyl-CoA decarboxylase A subunit {Acidaminoc | 97.67 | |
| d1on3a2 | 264 | Methylmalonyl-CoA carboxyltransferase (transcarbox | 97.61 | |
| d1xnya2 | 263 | Propionyl-CoA carboxylase complex B subunit, PccB | 97.6 | |
| d1pixa3 | 299 | Glutaconyl-CoA decarboxylase A subunit {Acidaminoc | 97.29 | |
| d1uyra1 | 333 | Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc | 97.1 | |
| d1uyra2 | 404 | Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc | 96.09 | |
| d2csua2 | 161 | Acetate-CoA ligase alpha chain, AcdA, domains 2 an | 85.7 |
| >d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Carbapenem biosynthes protein CarB species: Pectobacterium carotovorum [TaxId: 554]
Probab=100.00 E-value=1.2e-46 Score=287.38 Aligned_cols=178 Identities=24% Similarity=0.317 Sum_probs=166.5
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-c-cCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-Q-MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALG 78 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g 78 (179)
|+.+|.+++++++.|+++|+|||+|.++++||+|.|++++ . ...+....+.+.+.+++..+.++|||+||+|||+|+|
T Consensus 28 ~~~~l~~~l~~~~~d~~i~~vVl~~~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIaav~G~a~G 107 (230)
T d2a7ka1 28 LETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWIDRVIDLYQAVLNVNKPTIAAVDGYAIG 107 (230)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHHHHHHHHHHHHHTCCSCEEEEECSEEET
T ss_pred HHHHHHHHHHHHHhCCcccccceeccchhhhhhhcccccccccccccccccchhhhhhhhhcccchhcceeeeccccccc
Confidence 6789999999999999999999999877899999999998 3 2345667778888999999999999999999999999
Q ss_pred hhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHH
Q 030339 79 GGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 158 (179)
Q Consensus 79 ~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~ 158 (179)
||++|+++||+||++++++|++||.++|++|++|. .++++++|.+++++++++|++++++||+++||||+|++++++.+
T Consensus 108 gG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~-~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~ 186 (230)
T d2a7ka1 108 MGFQFALMFDQRLMASTANFVMPELKHGIGCSVGA-AILGFTHGFSTMQEIIYQCQSLDAPRCVDYRLVNQVVESSALLD 186 (230)
T ss_dssp HHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHH-HHHHHHHCHHHHHHHHHHCCCBCHHHHHHHTCCSEEECHHHHHH
T ss_pred ccccchhccchhhccccchhhhccccccccccccc-cccccccccccccccccccccchHHHHHHhhhcccCCChHHHHH
Confidence 99999999999999999999999999999998765 57899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030339 159 KALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 159 ~a~~~a~~~~~~~~~a~~~~K 179 (179)
++.+++++++++||.+++.+|
T Consensus 187 ~a~~~a~~ia~~~~~a~~~~K 207 (230)
T d2a7ka1 187 AAITQAHVMASYPASAFINTK 207 (230)
T ss_dssp HHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999886
|
| >d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Probable enoyl-CoA hydratase TTHA0218 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=8.4e-47 Score=293.57 Aligned_cols=178 Identities=25% Similarity=0.362 Sum_probs=169.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc---ccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEccccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL---QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 77 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~ 77 (179)
|+++|.+++++++.|+++|+|||||. |++||+|.|++++ ..+++....+....++++..+.++||||||+|||+|+
T Consensus 37 m~~el~~~~~~~~~d~~vr~vvl~g~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIa~v~G~a~ 115 (263)
T d1wz8a1 37 LHRGLARVWRDLEAVEGVRAVLLRGE-GGVFSAGGSFGLIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAV 115 (263)
T ss_dssp HHHHHHHHHHHHTTCTTCSEEEEEEG-GGCCBCCBCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEE
T ss_pred HHHHHHHHHHHHhhCCCCeEEEEecc-cccccccchhhhhhhhcccccccccchhhhhHHHHHhhhhhcceeeecccccc
Confidence 68899999999999999999999998 7999999999988 2345666777788889999999999999999999999
Q ss_pred chhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHH
Q 030339 78 GGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 157 (179)
Q Consensus 78 g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~ 157 (179)
|||++|+++||++|++++++|++||.++|++|++++++++++++|..++++++++|++++++||+++||||+|++++++.
T Consensus 116 GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~~G~~~a~~l~l~g~~i~a~eA~~~Glv~~vv~~~~l~ 195 (263)
T d1wz8a1 116 GAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAKYHLLLNEPLTGEEAERLGLVALAVEDEKVY 195 (263)
T ss_dssp THHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCHHHHHHHHHHTCCEEHHHHHHHTSSSEEECGGGHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccchhHHHhcCCcccccchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCHHHHHhhC
Q 030339 158 LKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 158 ~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+++.+++++++++||.+++.+|
T Consensus 196 ~~a~~~a~~la~~~~~al~~~K 217 (263)
T d1wz8a1 196 EKALEVAERLAQGPKEALHHTK 217 (263)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHH
Confidence 9999999999999999999886
|
| >d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=100.00 E-value=5.5e-46 Score=286.85 Aligned_cols=179 Identities=27% Similarity=0.358 Sum_probs=169.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+.+|.++++.++.|+++++|||+|.++++||+|.|++++ .........+...+++++.++.++|||+||+|||+|+|+
T Consensus 31 ~~~~l~~~l~~~~~d~~v~~vvl~g~g~~~Fs~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~a~Gg 110 (249)
T d1sg4a1 31 FLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSPAHYAGYWKAVQELWLRLYQSNLVLVSAINGACPAG 110 (249)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCCHHHHHHHHHHHHHHHHHHHTCSSEEEEEECEEBCHH
T ss_pred HHHHHHHHHHHHHhCCCccEEEEEeccceeEecccccccccccccccccccchhhHHHHHhhhcCccccchhhccccccc
Confidence 6889999999999999999999999856689999999998 456677778888899999999999999999999999999
Q ss_pred hHHHHhhcCEEEEcCCcee--ecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHH
Q 030339 80 GLEMALACDLRICGEAALL--GLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQ 157 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~--~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~ 157 (179)
|++|+++||+||++++++| ++||+++|++|++++++++++++|++.+++++++|+++++++|+++||||++++++++.
T Consensus 111 G~~lal~~D~~ia~~~a~f~~~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~lll~g~~~~a~~A~~~Glv~~v~~~~~l~ 190 (249)
T d1sg4a1 111 GCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVDQVVPEEQVQ 190 (249)
T ss_dssp HHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCHHHHHHHHHHTCCBCHHHHHHHTSSSEEECGGGHH
T ss_pred ccccccccccceeeccccccccccccccccccccccccccccccccccccccccccccccHHHHHhhccccccCChHHHH
Confidence 9999999999999999876 78999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCHHHHHhhC
Q 030339 158 LKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 158 ~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+++.++++++++.|+.+++.+|
T Consensus 191 ~~a~~~a~~l~~~~~~a~~~~K 212 (249)
T d1sg4a1 191 STALSAIAQWMAIPDHARQLTK 212 (249)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999998876
|
| >d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3e-45 Score=282.11 Aligned_cols=177 Identities=20% Similarity=0.336 Sum_probs=160.3
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCc----hhHHHHHHHHHHHHHHHhcCCCcEEEEEccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSP----SEIHFYVNTLRSTFSFLEALPIPTIAVIDGA 75 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~ 75 (179)
|+.+|.+++++++.|+.+ +||++|. ++.||+|.|+.++ .... .........+.++++++.++|||+||+|||+
T Consensus 31 ~~~~l~~~l~~~~~d~~v-~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIa~v~G~ 108 (245)
T d2f6qa1 31 MYHEIMRALKAASKDDSI-ITVLTGN-GDYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGP 108 (245)
T ss_dssp HHHHHHHHHHHHHHSSCS-EEEEEES-TTCSBCCBCC----CCCTTHHHHHHHHHHHHHHHHHHHHHSCCSCEEEEECSC
T ss_pred HHHHHHHHHHHHhcCCce-EEeecCC-CccccCCccchhhhcccccccccccchhhhHHHHHHhhhhhcCCceEEEECCc
Confidence 678999999999999887 8999998 8999999999998 2222 2233445556788999999999999999999
Q ss_pred ccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCCh
Q 030339 76 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 155 (179)
Q Consensus 76 a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~ 155 (179)
|+|||++++++||+||++++++|++||.++|++|++++++++++++|..++++++++|++++|+||+++||||+|+|+++
T Consensus 109 a~GgG~~la~~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~ 188 (245)
T d2f6qa1 109 AVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPDST 188 (245)
T ss_dssp EETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCHHHHHHHHTTCCCEEHHHHHHTTSCSEEECTTT
T ss_pred cccccccchhhhhhhhhhccCeEecccccCCCCccccchhhcccccccchhhhhcccccccccccccccccccccCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCHHHHHhhC
Q 030339 156 AQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 156 ~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+.+++.+++++++++||.+++.+|
T Consensus 189 l~~~a~~~a~~la~~~~~a~~~~K 212 (245)
T d2f6qa1 189 FQKEVWTRLKAFAKLPPNALRISK 212 (245)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999887
|
| >d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Chromodomain protein CDY2A species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-45 Score=285.80 Aligned_cols=177 Identities=21% Similarity=0.395 Sum_probs=164.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-c----cCchhHHHHHHHHHHHHHHHhcCCCcEEEEEccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-Q----MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGA 75 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~ 75 (179)
|+++|.++++.++.| ++++|||||. |+.||+|.|+.++ . .......++.+.+++++..+.++|||+||+|||+
T Consensus 31 ~~~el~~al~~~~~d-~~~~vvl~g~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~ 108 (258)
T d2fw2a1 31 VIKEMVNALNSAAAD-DSKLVLFSAA-GSVFCCGLDFGYFVRHLRNDRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGP 108 (258)
T ss_dssp HHHHHHHHHHHHHHS-SCSEEEEEEC-SSCSBCCBCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCEEEEECSC
T ss_pred HHHHHHHHHHHHHcC-CCEEEEEecC-ccccccccccchhhhcccccccchhhHHHHHHHHHHHhhhccceeeeeecccc
Confidence 688999999999987 4599999999 7999999999988 1 1223355677788899999999999999999999
Q ss_pred ccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCCh
Q 030339 76 ALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ 155 (179)
Q Consensus 76 a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~ 155 (179)
|+|||++++++||+||++++++|++||.++|++|++++++++++++|.+.+++++++|+++++++|+++||||+|+++++
T Consensus 109 a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~ig~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~ 188 (258)
T d2fw2a1 109 AIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGT 188 (258)
T ss_dssp EETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHTTCCEEEHHHHHHTTSCSEEECSTT
T ss_pred cccccccccccccccceecccceeeccccccccccccccccchhhcCccccchhhccCcccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCHHHHHhhC
Q 030339 156 AQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 156 ~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+.+++.+++++++++||.+++.+|
T Consensus 189 l~~~a~~~a~~i~~~~~~a~~~~K 212 (258)
T d2fw2a1 189 FTQEVMIQIKELASYNAIVLEECK 212 (258)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred cccccchhhhhhhhhhHHHHHHHH
Confidence 999999999999999999998876
|
| >d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=3.9e-45 Score=283.31 Aligned_cols=177 Identities=36% Similarity=0.608 Sum_probs=162.8
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchh
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGG 80 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G 80 (179)
|+++|.++|++++.|+++++|||||. ++.||+|.|+.++.... ....+...+..++..+.++|||+||+|||+|+|||
T Consensus 35 ~~~~l~~~l~~~~~d~~v~~vvl~g~-g~~F~aG~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~GgG 112 (260)
T d1mj3a_ 35 LIEELNQALETFEEDPAVGAIVLTGG-EKAFAAGADIKEMQNRT-FQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGG 112 (260)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEECC-SSEEECCBCHHHHTTCC-HHHHHHC--CCGGGGGGGCSSCEEEEECSEEETHH
T ss_pred HHHHHHHHHHHHHhCCCcceEEEecc-cccccccchhhhhhccc-hhhhhHHHHHHHHHHhccCCCeEEEEEcCeEeHHH
Confidence 68899999999999999999999998 89999999999883222 22234455667788999999999999999999999
Q ss_pred HHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHHH
Q 030339 81 LEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLKA 160 (179)
Q Consensus 81 ~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~a 160 (179)
++|+++||+||++++++|++||.++|++|++++++++++++|.+.+++++++|++++++||+++|||++|++++++.+++
T Consensus 113 ~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~a 192 (260)
T d1mj3a_ 113 CELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEA 192 (260)
T ss_dssp HHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECTTTHHHHH
T ss_pred HHHHHHCCEEEEcCCCEEECchhccCcCCcccHHHHHHHHhCHHHHHHHHHcCcccCchhhccCCCceeeeccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCHHHHHhhC
Q 030339 161 LEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 161 ~~~a~~~~~~~~~a~~~~K 179 (179)
.++++++++.+|.+++.+|
T Consensus 193 ~~~a~~i~~~~~~a~~~~K 211 (260)
T d1mj3a_ 193 IQCAEKIANNSKIIVAMAK 211 (260)
T ss_dssp HHHHHHHHHSCHHHHHHHH
T ss_pred ccccccccchhhHHHHHHH
Confidence 9999999999999999886
|
| >d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: AUH protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-44 Score=282.09 Aligned_cols=179 Identities=46% Similarity=0.784 Sum_probs=166.3
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+++|.+++++++.|+++++|||||.++++||+|.|++.+ .........+.+.+..++..+.++|||+||+|||+|+||
T Consensus 34 ~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~f~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIaav~G~a~Gg 113 (266)
T d1hzda_ 34 LIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGG 113 (266)
T ss_dssp HHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEEEEESEEEETH
T ss_pred HHHHHHHHHHHHHhCCCcceEEEeccccccccccccccccccccchhhhhhhhHHHHHHHHHhcCCcccccccccccccc
Confidence 6889999999999999999999999967889999999988 445566777888889999999999999999999999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCCh----
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQ---- 155 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~---- 155 (179)
|++|+++||+||++++++|++||+++|++|++++++++++++|.+++++++++|++++|++|+++||||+|+|+++
T Consensus 114 G~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~ 193 (266)
T d1hzda_ 114 GLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQEGDA 193 (266)
T ss_dssp HHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHTCEEEHHHHHHHTSCSEEECCCTTSCH
T ss_pred cceeccccceeeecCCcEEeecccceeecCCccceeeehhhhHHHHHHhhhccCCccCHHHhhcccccccccChhhhhhH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999766
Q ss_pred HHHHHHHHHHHHhccCHHHHHhhC
Q 030339 156 AQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 156 ~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+.+.+.+++++++++||.+++.+|
T Consensus 194 ~~~~a~~~a~~i~~~~p~a~~~~K 217 (266)
T d1hzda_ 194 AYRKALDLAREFLPQGPVAMRVAK 217 (266)
T ss_dssp HHHHHHHHHHTTTTSCHHHHHHHH
T ss_pred HHHHHHHHHHhcccCChHHHHHHH
Confidence 456667777899999999999876
|
| >d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: 4-Chlorobenzoyl-CoA dehalogenase species: Pseudomonas sp., strain CBS-3 [TaxId: 306]
Probab=100.00 E-value=1.7e-44 Score=281.23 Aligned_cols=178 Identities=24% Similarity=0.379 Sum_probs=164.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCc------hhHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSP------SEIHFYVNTLRSTFSFLEALPIPTIAVIDG 74 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G 74 (179)
|+.+|.++++++++|+++++|||||. ++.||+|.|+.++.... +........++.++.++.++|||+||+|||
T Consensus 31 ~~~el~~~l~~~~~d~~i~~vvltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G 109 (269)
T d1nzya_ 31 AMQEVTDALNRAEEDDSVGAVMITGA-EDAFCAGFYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAING 109 (269)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEES-TTCSBCCBCGGGSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCSSCEEEEECS
T ss_pred HHHHHHHHHHHHHhCCCceEEEEeCC-cccccchhhHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhcchhehhhhh
Confidence 68899999999999999999999999 79999999999883221 223334455678899999999999999999
Q ss_pred cccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCC
Q 030339 75 AALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAG 154 (179)
Q Consensus 75 ~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~ 154 (179)
+|+|||++|+++||+||++++++|++|+.++|++|++++++++++++|..++++++++|++++|+||+++||||+|++++
T Consensus 110 ~a~GgG~~lal~~D~ria~~~a~~~~~~~~~g~~~~~g~~~~l~~~ig~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~ 189 (269)
T d1nzya_ 110 VAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRVYPKD 189 (269)
T ss_dssp EEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHHHHHHHHHHHHCCCBCHHHHHHHTSCSCEECHH
T ss_pred hcCCCceeeeecccHhhhhhhhhhcccccccccccccccccccccccChhhhhhccccccccchhHHHHcCCcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhccCHHHHHhhC
Q 030339 155 QAQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 155 ~~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
++.+++.++|+++++.|+.+++++|
T Consensus 190 ~l~~~a~~~a~~la~~~~~a~~~~K 214 (269)
T d1nzya_ 190 EFREVAWKVARELAAAPTHLQVMAK 214 (269)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred ccccchhhhhhhhhhhhHHHHHHHH
Confidence 9999999999999999999999887
|
| >d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Fatty oxidation complex alpha subunit, N-terminal domain species: Pseudomonas fragi [TaxId: 296]
Probab=100.00 E-value=4.5e-44 Score=283.96 Aligned_cols=172 Identities=37% Similarity=0.570 Sum_probs=158.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-c---cCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-Q---MSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 76 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a 76 (179)
|+.+|.++++.++.|+++++|||+|. ++.||+|.|+.++ . ............+++++..+.++|||+||+|||+|
T Consensus 36 ~~~el~~al~~~~~d~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 114 (310)
T d1wdka4 36 TLNELRQAVDAIKADASVKGVIVSSG-KDVFIVGADITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIA 114 (310)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEES-SSSSBBCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEEEEECSCE
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECC-CCCccchhhhhhhhhcccccchhhhhhhhHHHHHHHHhhcCCccceeeccccc
Confidence 57899999999999999999999998 8999999999988 1 22333444455678899999999999999999999
Q ss_pred cchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChH
Q 030339 77 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 156 (179)
Q Consensus 77 ~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~ 156 (179)
+|||++|+++||+||++++++|++||+++|++|++|++++|++++|...+++++++|++++++||+++||||+|+|++++
T Consensus 115 ~GgG~elal~cD~ria~~~a~f~~pe~~~Gl~P~~gg~~~L~r~iG~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l 194 (310)
T d1wdka4 115 LGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENRAEDALKVSAVDAVVTADKL 194 (310)
T ss_dssp ETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSSSEEECGGGH
T ss_pred cccccccchhhhhhhccccceecccccccCCCccccchhhhhhhhhhhhhhhhhccccccCHHHHhhccCccEEccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCHH
Q 030339 157 QLKALEIAQEINQKVQS 173 (179)
Q Consensus 157 ~~~a~~~a~~~~~~~~~ 173 (179)
.+++.++++++++.++.
T Consensus 195 ~~~a~~~a~~~~~~~~~ 211 (310)
T d1wdka4 195 GAAALDLIKRAISGELD 211 (310)
T ss_dssp HHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHhcccc
Confidence 99999999999987654
|
| >d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Methylmalonyl CoA decarboxylase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-44 Score=281.10 Aligned_cols=178 Identities=23% Similarity=0.442 Sum_probs=160.5
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeC-CCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSS-VPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~-~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+++|.++|++++ ++++++|||+|. ++++||+|.|++++.....+...+.+.++.++..+.++|||+||+|||+|+||
T Consensus 32 ~~~~l~~al~~~~-~~~~~~vVl~g~~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~Gg 110 (261)
T d1ef8a_ 32 FIDDLMQALSDLN-RPEIRCIILRAPSGSKVFSAGHDIHELPSGGRDPLSYDDPLRQITRMIQKFPKPIISMVEGSVWGG 110 (261)
T ss_dssp HHHHHHHHHHHTC-STTCCEEEEECCTTCSEEECCSCSTTC-----CTTCTTSHHHHHHHHHHHCSSCEEEEECSEEETH
T ss_pred HHHHHHHHHHHHh-CCCCEEEEEeccccchhhcccccccccccCCccccccccchhhhHHHHHhCchhhhhcccccccch
Confidence 6789999999997 457899999985 46799999999998322222223445567889999999999999999999999
Q ss_pred hHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHHH
Q 030339 80 GLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQLK 159 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 159 (179)
|++|+++||+||++++++|++||.++|++|+.++++++++.+|..++++++++|++++++||+++||||+|++++++.++
T Consensus 111 G~~lal~cD~ria~~~a~~~~pe~~~Gl~~~~~~~~~l~r~~g~~~a~~~~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~ 190 (261)
T d1ef8a_ 111 AFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPITAQRALAVGILNHVVEVEELEDF 190 (261)
T ss_dssp HHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSSCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECHHHHHHH
T ss_pred hhhhhhhhhhhhhhHhHHHhhhhcccccccccccccccccccCccccccccccCceEcHHHHHHcCCcceeeechhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHhhC
Q 030339 160 ALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 160 a~~~a~~~~~~~~~a~~~~K 179 (179)
+.++++++++.+|.+++.+|
T Consensus 191 a~~~a~~la~~~~~a~~~~K 210 (261)
T d1ef8a_ 191 TLQMAHHISEKAPLAIAVIK 210 (261)
T ss_dssp HHHHHHHHTTSCHHHHHHHH
T ss_pred hHHHHHHHHhcCcHHHHHHH
Confidence 99999999999999999876
|
| >d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: 6-oxo camphor hydrolase species: Rhodococcus erythropolis [TaxId: 1833]
Probab=100.00 E-value=1.2e-43 Score=273.73 Aligned_cols=177 Identities=21% Similarity=0.356 Sum_probs=166.7
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccch
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGG 79 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~ 79 (179)
|+.+|.+++++++.|+++++|||+|. +++||+|.|++++ ...++....+...++.+++.+.++|||+|+++||.|.|
T Consensus 41 ~~~el~~al~~~~~d~~v~~vvl~g~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~pvIa~v~g~~~G- 118 (249)
T d1szoa_ 41 AHDELAYCFHDIACDRENKVVILTGT-GPSFCNEIDFTSFNLGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNGPVTN- 118 (249)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEECB-TTBSBCEECGGGSCCSSHHHHHHHHHHHHHHHHHHHHCCSCEEEEECSCBCS-
T ss_pred HHHHHHHHHHHHHhCCCcceEeeecc-cccccccchhhhhhcccccchhhhhhhhhhhhhhcccCcccceeeecccccc-
Confidence 67899999999999999999999999 7999999999998 55667777888888999999999999999999998865
Q ss_pred hHHHHhhcCEEEEcCCceee-cccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChHHH
Q 030339 80 GLEMALACDLRICGEAALLG-LPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQAQL 158 (179)
Q Consensus 80 G~~l~~~~D~~va~~~a~~~-~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~~~ 158 (179)
|++++++||+||++++++|. +||.++|++|+.++++++++++|..++++++++|++++++||+++||||+|++++++.+
T Consensus 119 G~~l~l~~D~ria~~~a~f~~~pe~~~g~~p~~g~~~~l~r~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~ 198 (249)
T d1szoa_ 119 APEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELDARTALDYGAVNEVLSEQELLP 198 (249)
T ss_dssp STHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHCHHHHHHHHHTTCEEEHHHHHHHTSCSEEECHHHHHH
T ss_pred ccccccccccccccCCcEEEEeeccccccccccccccccccccCccceeeecccCCCCCHHHHHHhCCcCcccCHHHHHH
Confidence 67899999999999999985 79999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHhhC
Q 030339 159 KALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 159 ~a~~~a~~~~~~~~~a~~~~K 179 (179)
++.+++++++++||.+++.+|
T Consensus 199 ~a~~~a~~la~~~~~a~~~~K 219 (249)
T d1szoa_ 199 RAWELARGIAEKPLLARRYAR 219 (249)
T ss_dssp HHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999887
|
| >d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.6e-43 Score=273.24 Aligned_cols=177 Identities=33% Similarity=0.515 Sum_probs=164.1
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc----ccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccc
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL----QMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAA 76 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a 76 (179)
|+.+|.+++++++.|+++++|||||. ++.||+|.|+..+ .........+....+.++..+.++|||+||+|||+|
T Consensus 27 ~~~el~~~l~~~~~d~~v~~vvl~g~-g~~f~aG~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIaav~G~a 105 (253)
T d1uiya_ 27 MALSLLQALDDLEADPGVRAVVLTGR-GKAFSAGADLAFLERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPA 105 (253)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEES-SSCSBCCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSCE
T ss_pred HHHHHHHHHHHHHhCCCceEEEEecc-cccccccchhHHhhhccccCcccccchhhhhhhhhhHHhcCCCCEEEEeCeEE
Confidence 67899999999999999999999999 8999999999877 233445566667778899999999999999999999
Q ss_pred cchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCccccccCCChH
Q 030339 77 LGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPAGQA 156 (179)
Q Consensus 77 ~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~~~~ 156 (179)
+|||++|+++||+||++++++|++||.++|++|. ++++++++++|.+++++++++|++++++||+++||||+|++++++
T Consensus 106 ~GgG~~lal~~D~ria~~~a~~~~~e~~~g~~~~-~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~ 184 (253)
T d1uiya_ 106 VAGGAGLALACDLVVMDEEARLGYTEVKIGFVAA-LVSVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRIAPPGKA 184 (253)
T ss_dssp ETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCH-HHHHHHHHHSCHHHHHHHHHHCCEEEHHHHHHHTSCSEEECTTCH
T ss_pred ehhhHHHHhhhhhhhhhhhhHHhhhhcccccccc-cchhhhhcccCHHHHHHHhhcCcCCCHHHHHHhCCCccccccccc
Confidence 9999999999999999999999999999998885 567889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCHHHHHhhC
Q 030339 157 QLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 157 ~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
.+++.++++++++.|+.++..+|
T Consensus 185 ~~~a~~~a~~~~~~~~~a~~~~K 207 (253)
T d1uiya_ 185 LEEAKALAEEVAKNAPTSLRLTK 207 (253)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHH
T ss_pred chhHHHHHHhhcccchHHHHHHH
Confidence 99999999999999999998876
|
| >d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=9.4e-43 Score=270.96 Aligned_cols=178 Identities=16% Similarity=0.179 Sum_probs=154.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-ccC-----------chhHHHHHHHHHHHHHHHhcCCCcE
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-QMS-----------PSEIHFYVNTLRSTFSFLEALPIPT 68 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~~~-----------~~~~~~~~~~~~~~~~~~~~~~kp~ 68 (179)
|+.+|.+++++++.|+++++|||+|. |++||+|.|++++ ... ......+......++..+.++|||+
T Consensus 33 ~~~el~~al~~~~~d~~v~~vVl~g~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~ 111 (266)
T d1pjha_ 33 DYIYLGELLELADRNRDVYFTIIQSS-GRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVL 111 (266)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEECB-TTBSBCCBCHHHHHC-------CCSSHHHHHHHHTHHHHHHHHHHHHHCCSEE
T ss_pred HHHHHHHHHHHHHhCCCceEEEEecc-ccccccchhHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHhcchhh
Confidence 67899999999999999999999999 7999999999987 111 1123445667778899999999999
Q ss_pred EEEEcccccchhHHHHhhcCEEEEcCC-ceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHHHhcCcc
Q 030339 69 IAVIDGAALGGGLEMALACDLRICGEA-ALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLV 147 (179)
Q Consensus 69 ia~v~G~a~g~G~~l~~~~D~~va~~~-a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a~~~Glv 147 (179)
||+|||+|+|||++|+++||+||++++ ++|++||+++|++|++|+++++++++|.+++++++++|++++++||+++|||
T Consensus 112 IAav~G~a~GgG~~lal~~D~~ia~~~~~~~~~pe~~lGl~p~~g~~~~l~r~~g~~~a~~llltg~~~~a~eA~~~Glv 191 (266)
T d1pjha_ 112 ICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDIMCENGFI 191 (266)
T ss_dssp EEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHHTTCCEEHHHHHHTTCC
T ss_pred hhhhhcccccccccchhccchhhhhhccccccccccccccccccccccccccccccchhhhhhccCCcCCHHHHHHCCCE
Confidence 999999999999999999999999755 7899999999999999999999999999999999999999999999999999
Q ss_pred ccccCCChHHHH------HHHHHHHHhccCHHHHHhhC
Q 030339 148 NYYVPAGQAQLK------ALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 148 ~~v~~~~~~~~~------a~~~a~~~~~~~~~a~~~~K 179 (179)
|+|+++++...+ +..+++++...++.++..+|
T Consensus 192 ~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~K 229 (266)
T d1pjha_ 192 SKNFNMPSSNAEAFNAKVLEELREKVKGLYLPSCLGMK 229 (266)
T ss_dssp SEECCCCTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred eEeeCchhhhHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999975443322 34567777788998887765
|
| >d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=7.4e-42 Score=266.91 Aligned_cols=178 Identities=30% Similarity=0.561 Sum_probs=159.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCCCCccccccCcccc-c--cCc---------hhHHHHHHHHHHHHHHHhcCCCcE
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVL-Q--MSP---------SEIHFYVNTLRSTFSFLEALPIPT 68 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~-~--~~~---------~~~~~~~~~~~~~~~~~~~~~kp~ 68 (179)
|+.+|.++|+.+++|+++++|||||. ++.||+|.|+.++ . ... .........++.++..+.++|||+
T Consensus 32 m~~el~~~l~~~~~d~~v~~vvltg~-~~~F~aG~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPv 110 (275)
T d1dcia_ 32 FWRELVECFQKISKDSDCRAVVVSGA-GKMFTSGIDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPV 110 (275)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEEEEES-TTCSBCCBCHHHHHHHHTSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHSSSCE
T ss_pred HHHHHHHHHHHHHhCCCceEEEEecc-ccccccCccHHHhhhcccccccccccchhhhhccchhhhHHHHHHHHhcCCCE
Confidence 68899999999999999999999998 8999999999877 1 110 123345556778889999999999
Q ss_pred EEEEcccccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCH-HHHHHHHhcCCCcCHHHHHhcCcc
Q 030339 69 IAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGK-SVAKDIIFTGRKVSGKDAMSLGLV 147 (179)
Q Consensus 69 ia~v~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~-~~a~~l~l~g~~~~a~~a~~~Glv 147 (179)
||+|||+|+|||++|+++||+||++++++|++||+++|++|++++++++++.+|. ..+++++++|++++++||+++|||
T Consensus 111 Iaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~Gl~p~~~~~~~~~~~~g~~~~~~~ll~~g~~~~a~eA~~~Glv 190 (275)
T d1dcia_ 111 IAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLV 190 (275)
T ss_dssp EEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHGGGTCSCHHHHHHHHHHCCEEEHHHHHHHTSS
T ss_pred EEEEeeEeehhhHHHHhhcCchhhccCccccchhcccccccccccccccccccccccccccccccccccchhhhccCCCc
Confidence 9999999999999999999999999999999999999999999999999999984 556789999999999999999999
Q ss_pred ccccCCCh-HHHHHHHHHHHHhccCHHHHHhhC
Q 030339 148 NYYVPAGQ-AQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 148 ~~v~~~~~-~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
|+|+++++ +.+++.++++++++++|.+++.+|
T Consensus 191 ~~v~~~~~~l~~~~~~~a~~i~~~~p~a~~~~K 223 (275)
T d1dcia_ 191 SRVFPDKDVMLNAAFALAADISSKSPVAVQGSK 223 (275)
T ss_dssp SEEESSHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred eeeeehhhhhhhcccccccccccccHHHHHHHH
Confidence 99998755 567789999999999999999876
|
| >d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Naphthoate synthase MenB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=2e-41 Score=267.20 Aligned_cols=179 Identities=22% Similarity=0.369 Sum_probs=151.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEeCC------CCccccccCccccc-cC-----------chhHHHHHHHHHHHHHHHh
Q 030339 1 MLRGLKHAFETISEDSSANVVMIRSSV------PKVFCAGADLKVLQ-MS-----------PSEIHFYVNTLRSTFSFLE 62 (179)
Q Consensus 1 m~~~l~~~l~~~~~d~~v~~vvl~g~~------~~~F~~G~D~~~~~-~~-----------~~~~~~~~~~~~~~~~~~~ 62 (179)
|+.+|.+++++++.|+++|+|||||.+ ++.||+|.|+.... .. .+........+..++..+.
T Consensus 48 m~~eL~~~l~~~~~d~~vr~vVltg~~~~f~~gG~~f~ag~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 127 (297)
T d1q52a_ 48 TVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIR 127 (297)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCC-----------------------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccEEEEecCCCcccchhhhhhhcchhhhhcccccccccccccchhhhHHHHHHHHHHHHHHHH
Confidence 688999999999999999999999983 44567777776541 00 0112222334567888999
Q ss_pred cCCCcEEEEEcccccchhHHHHhhcCEEEEcCC-ceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHH
Q 030339 63 ALPIPTIAVIDGAALGGGLEMALACDLRICGEA-ALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 141 (179)
Q Consensus 63 ~~~kp~ia~v~G~a~g~G~~l~~~~D~~va~~~-a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a 141 (179)
++||||||+|||+|+|||++++++||++|++++ ++|++||.++|++|+++++++|++++|.+++++++++|++++++||
T Consensus 128 ~~~kPvIaav~G~a~GGG~~lal~~D~~ia~~~~~~f~~pe~~~Gl~p~~~~~~~L~r~iG~~~a~~llltg~~~~a~eA 207 (297)
T d1q52a_ 128 FMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYTAEQM 207 (297)
T ss_dssp HSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCGGGGTCCCCSTTTHHHHHHHCHHHHHHHHHHCCEECHHHH
T ss_pred hcCCeEEEEEcceeeeccchhhhhhhccccccccccceeeeeccccccccccccccccccCccceeeccccccccchHhh
Confidence 999999999999999999999999999999876 5799999999999999999999999999999999999999999999
Q ss_pred HhcCccccccCCChHHHHHHHHHHHHhccCHHHHHhhC
Q 030339 142 MSLGLVNYYVPAGQAQLKALEIAQEINQKVQSVFRILL 179 (179)
Q Consensus 142 ~~~Glv~~v~~~~~~~~~a~~~a~~~~~~~~~a~~~~K 179 (179)
+++||||+|++++++.+++.++++++++.||.+++.+|
T Consensus 208 ~~~Glv~~vv~~~el~~~~~~~a~~l~~~~~~a~~~~K 245 (297)
T d1q52a_ 208 HQMGAVNAVAEHAELETVGLQWAAEINAKSPQAQRMLK 245 (297)
T ss_dssp HHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred hhhccccccCchHHhhHHHHHHhhhhccCCHHHHHHHH
Confidence 99999999999999999999999999999999999876
|
| >d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.84 E-value=8.9e-09 Score=73.74 Aligned_cols=99 Identities=12% Similarity=0.024 Sum_probs=71.5
Q ss_pred HHHHHHHhcCCCcEEEEEcccccchhHHHHhhcC--EEEEcCCceeecccccccccCCcchh---------------hhh
Q 030339 55 RSTFSFLEALPIPTIAVIDGAALGGGLEMALACD--LRICGEAALLGLPETGLAIIPGAGGT---------------QRL 117 (179)
Q Consensus 55 ~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D--~~va~~~a~~~~p~~~~G~~p~~~~~---------------~~l 117 (179)
..++..+...+.|+...+.|.|.+.|..+.+++| .|++.++++|-++++..|......-. ..+
T Consensus 61 l~i~d~i~~~~~~v~t~~~G~aaS~a~~il~ag~k~~R~~~~~s~~miH~~~~~~~G~~~~i~~~~~~l~~~~~~i~~i~ 140 (179)
T d2cbya1 61 MAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLN 140 (179)
T ss_dssp HHHHHHHHHCSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEECCCC----------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccceeeehhhhhhhHHHHHHHcCCCCceEECCchHhhcCCCchhcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777789999999999999999999999999 79999999999988765543211100 111
Q ss_pred hcc--cCHHHHHHHHhcCCCcCHHHHHhcCccccccCC
Q 030339 118 PRL--VGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA 153 (179)
Q Consensus 118 ~~~--~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~ 153 (179)
.+. .......+++..-..++|+||+++||||+|+.+
T Consensus 141 a~~tg~~~~~i~~~~~~d~~l~a~EA~~~GliDeIi~~ 178 (179)
T d2cbya1 141 AEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITR 178 (179)
T ss_dssp HHHHCCCHHHHHHHHHTTCEEEHHHHHHHTSCSEECSC
T ss_pred HHHhCCCHHHHHHhhcCCceecHHHHHHcCCCcEEecC
Confidence 112 224555666667789999999999999999864
|
| >d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Escherichia coli [TaxId: 562]
Probab=98.84 E-value=3.8e-09 Score=75.93 Aligned_cols=100 Identities=14% Similarity=0.051 Sum_probs=73.7
Q ss_pred HHHHHHHHhcCCCcEEEEEcccccchhHHHHhhcC--EEEEcCCceeecccccccccCCcchh---------------hh
Q 030339 54 LRSTFSFLEALPIPTIAVIDGAALGGGLEMALACD--LRICGEAALLGLPETGLAIIPGAGGT---------------QR 116 (179)
Q Consensus 54 ~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D--~~va~~~a~~~~p~~~~G~~p~~~~~---------------~~ 116 (179)
...++..+..++.|+.+.+.|.|.+.|..+.+++| .|++.|+++|-++++..|......-. ..
T Consensus 63 g~~i~d~i~~~~~~v~tv~~G~aaS~a~~I~~ag~~~~R~~~~ns~~miH~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~ 142 (183)
T d1yg6a1 63 GMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNEL 142 (183)
T ss_dssp HHHHHHHHHHSSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCEEEEEEEEeHHHHHHHHHcCCCCceeeCCCceEEecccccccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778899999999999999999999999998 79999999999888765543111000 01
Q ss_pred hhcc--cCHHHHHHHHhcCCCcCHHHHHhcCccccccCC
Q 030339 117 LPRL--VGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA 153 (179)
Q Consensus 117 l~~~--~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~ 153 (179)
+.+. .......+++..-..++|+||+++||||+|++.
T Consensus 143 ~~~~tg~~~e~i~~~~~~d~~lta~EAl~~GliD~Ii~~ 181 (183)
T d1yg6a1 143 MALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTH 181 (183)
T ss_dssp HHHHHCCCHHHHHHHTSSCEEEEHHHHHHHTSSSEECCC
T ss_pred HHHHHCcCHHHHHHHhccCccccHHHHHHcCCCcEEecc
Confidence 1112 224455555555567899999999999999864
|
| >d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.67 E-value=8.3e-08 Score=69.28 Aligned_cols=99 Identities=11% Similarity=0.035 Sum_probs=71.0
Q ss_pred HHHHHHHhcCCCcEEEEEcccccchhHHHHhh--cCEEEEcCCceeecccccccccCCcchh-----------------h
Q 030339 55 RSTFSFLEALPIPTIAVIDGAALGGGLEMALA--CDLRICGEAALLGLPETGLAIIPGAGGT-----------------Q 115 (179)
Q Consensus 55 ~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~--~D~~va~~~a~~~~p~~~~G~~p~~~~~-----------------~ 115 (179)
..++..+...+.|+...+.|.|.+.|..++++ +|.|++.+++++-++.+..|........ .
T Consensus 72 lai~d~i~~~~~~v~t~~~G~aaS~as~il~aG~~g~R~~~pns~~miHq~~~~~~G~~~~~~~~~~~~el~~~~~~i~~ 151 (192)
T d1y7oa1 72 LAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAPEHLLKTRNTLEK 151 (192)
T ss_dssp HHHHHHHHHSSSCEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEECCCCC--------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcceEEEeccccCCccceeeeecCCCccccchHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHH
Confidence 45677788899999999999999999888876 4799999999999998876654321111 0
Q ss_pred hhhcc--cCHHHHHHHHhcCCCcCHHHHHhcCccccccCC
Q 030339 116 RLPRL--VGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA 153 (179)
Q Consensus 116 ~l~~~--~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~ 153 (179)
.+.+. .......+.+-.-..++|+||+++||||+|++.
T Consensus 152 i~~~~tg~~~~~i~~~~~rd~~lsa~EAleyGliD~Ii~~ 191 (192)
T d1y7oa1 152 ILAENSGQSMEKVHADAERDNWMSAQETLEYGFIDEIMAN 191 (192)
T ss_dssp HHHHHHTCCHHHHHHHHHSCCCBCHHHHHHHTSCSEECCC
T ss_pred HHHHHhCCCHHHHHHhhcCCceecHHHHHHcCCCcEEecC
Confidence 11112 224555666667778999999999999999864
|
| >d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Plasmodium falciparum [TaxId: 5833]
Probab=98.65 E-value=1.2e-07 Score=68.34 Aligned_cols=99 Identities=5% Similarity=-0.037 Sum_probs=72.2
Q ss_pred HHHHHHHhcCCCcEEEEEcccccchhHHHHhhcC--EEEEcCCceeecccccccccCCcchh---------------hhh
Q 030339 55 RSTFSFLEALPIPTIAVIDGAALGGGLEMALACD--LRICGEAALLGLPETGLAIIPGAGGT---------------QRL 117 (179)
Q Consensus 55 ~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D--~~va~~~a~~~~p~~~~G~~p~~~~~---------------~~l 117 (179)
..++..+..++.|+...+.|.|.+.|..+++++| .|++.++++|-.+....|..-...-. ..+
T Consensus 65 ~ai~d~i~~~~~~v~tv~~G~aaS~a~~i~~aG~kg~R~~~pns~imiH~~s~~~~G~~~di~~~~~~l~~~~~~~~~i~ 144 (190)
T d2f6ia1 65 LAILDIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYL 144 (190)
T ss_dssp HHHHHHHHHSSSCEEEEEEEEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC--------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCceEEEEeccccchhHHHHHhCCCCccccCCCcEEEEcccccccCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788999999999999999999999998 59999999999988876653211100 112
Q ss_pred hcccC--HHHHHHHHhcCCCcCHHHHHhcCccccccCC
Q 030339 118 PRLVG--KSVAKDIIFTGRKVSGKDAMSLGLVNYYVPA 153 (179)
Q Consensus 118 ~~~~g--~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~~ 153 (179)
.+..| .....+..-.-..++|+||+++||||+|++.
T Consensus 145 a~~tg~~~~~i~~~~~~d~~l~a~EAl~~GliD~Ii~~ 182 (190)
T d2f6ia1 145 SSFTNQTVETIEKDSDRDYYMNALEAKQYGIIDEVIET 182 (190)
T ss_dssp HHHHCCCHHHHHHHHHTTCEECHHHHHHHTSCSEECCC
T ss_pred HHHcCCCHHHHHHhccCCeeecHHHHHHcCCCcEEccc
Confidence 22222 3344455555668999999999999999864
|
| >d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=98.63 E-value=1e-07 Score=68.79 Aligned_cols=98 Identities=12% Similarity=0.071 Sum_probs=73.3
Q ss_pred HHHHHHHhcCCCcEEEEEcccccchhHHHHhhcC--EEEEcCCceeecccccccccCCcchh---------------hhh
Q 030339 55 RSTFSFLEALPIPTIAVIDGAALGGGLEMALACD--LRICGEAALLGLPETGLAIIPGAGGT---------------QRL 117 (179)
Q Consensus 55 ~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D--~~va~~~a~~~~p~~~~G~~p~~~~~---------------~~l 117 (179)
..++..+...+-|+...+.|.|.+.|..+.+++| .|++.++++|-++....|..-...-. ..+
T Consensus 74 ~~i~d~i~~~~~~V~tv~~G~aaS~a~~il~aG~~g~R~~~pns~~miHq~~~~~~G~~~di~~~~~el~~~~~~i~~i~ 153 (193)
T d1tg6a1 74 LAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIY 153 (193)
T ss_dssp HHHHHHHHHSCSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCceEEEEccchHHHHHHHhhcCccCccccCcccHHHhcCCccCCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778889999999999999999999999999 59999999999988876653221101 011
Q ss_pred hcc--cCHHHHHHHHhcCCCcCHHHHHhcCccccccC
Q 030339 118 PRL--VGKSVAKDIIFTGRKVSGKDAMSLGLVNYYVP 152 (179)
Q Consensus 118 ~~~--~g~~~a~~l~l~g~~~~a~~a~~~Glv~~v~~ 152 (179)
.+. .......+++-.-..++|+||+++||||+|+.
T Consensus 154 a~~Tg~~~~~i~~~~~rD~~lta~EAl~yGliD~Ii~ 190 (193)
T d1tg6a1 154 AKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLV 190 (193)
T ss_dssp HHHHCCCHHHHHHHHSSCEEECHHHHHHHTSCSEECS
T ss_pred HHHcCCCHHHHHHHhccCccCCHHHHHHcCCCCEEcc
Confidence 111 12445555555556799999999999999985
|
| >d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA species: Escherichia coli [TaxId: 562]
Probab=98.27 E-value=1.1e-06 Score=67.59 Aligned_cols=95 Identities=13% Similarity=0.124 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHH
Q 030339 48 HFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAK 127 (179)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~ 127 (179)
......+.+.+..+.+++.|+|++|-|.+.|||+.....+|.+++.++++++. +.|.+..+.++...--...+.
T Consensus 172 ~g~~~~~a~~~~~~~~~~vP~i~vv~g~g~~gga~a~~~~d~v~m~~~a~~sv------ispEg~AsILwkd~~~a~eaA 245 (316)
T d2f9ya1 172 RGQSEAIARNLREMSRLGVPVVCTVIGEGGSGGALAIGVGDKVNMLQYSTYSV------ISPEGCASILWKSADKAPLAA 245 (316)
T ss_dssp TTHHHHHHHHHHHHHTCSSCEEEEEEEEEEHHHHHTTCCCSEEEECTTCEEES------SCHHHHHHHHSSCSTTHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCceEEEEEhhhhchhhhhhhhhhHHHHHhhhHHhh------ccchhhhhHhhccchhhcchH
Confidence 34455667788889999999999999999999999999999999999999982 245554444444332223333
Q ss_pred HHHhcCCCcCHHHHHhcCccccccC
Q 030339 128 DIIFTGRKVSGKDAMSLGLVNYYVP 152 (179)
Q Consensus 128 ~l~l~g~~~~a~~a~~~Glv~~v~~ 152 (179)
+.+ .+++++.+++|+||++++
T Consensus 246 eal----klta~dL~~lgiIDeII~ 266 (316)
T d2f9ya1 246 EAM----GIIRPRLKELKLIDSIIP 266 (316)
T ss_dssp HHH----TCSHHHHHTTTSCSCCCC
T ss_pred HHH----hhhhHHHHHcCchhhccc
Confidence 333 789999999999999994
|
| >d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) species: Propionibacterium freudenreichii [TaxId: 1744]
Probab=98.18 E-value=3.8e-05 Score=57.22 Aligned_cols=80 Identities=21% Similarity=0.276 Sum_probs=56.9
Q ss_pred CCcEEEEEcccccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHH----
Q 030339 65 PIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKD---- 140 (179)
Q Consensus 65 ~kp~ia~v~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~---- 140 (179)
..|+|+++.|+|.||+.....+||++++.+++.+++..++ .... .+|+.++.+|
T Consensus 161 ~vP~i~vv~Gp~~GG~a~~~~~~d~vi~~~~a~i~~aGP~-----------vVe~-----------~~ge~~~~eelGga 218 (253)
T d1on3a1 161 VVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFITGPQ-----------VIKS-----------VTGEDVTADELGGA 218 (253)
T ss_dssp TSCEEEEEEEEEESGGGHHHHHSSEEEEETTCEEESSCHH-----------HHHH-----------HHCCCCCHHHHHSH
T ss_pred cceEEEEEecCcccceeeccchhhheeccccceEEecCcc-----------hhhh-----------hhCCcCChHhccCH
Confidence 5899999999999999999999999999998877754221 1111 1345555442
Q ss_pred ---HHhcCccccccCCChHHHHHHHHHHHHhc
Q 030339 141 ---AMSLGLVNYYVPAGQAQLKALEIAQEINQ 169 (179)
Q Consensus 141 ---a~~~Glv~~v~~~~~~~~~a~~~a~~~~~ 169 (179)
+.+.|.||.+++++ +++.++++++.+
T Consensus 219 ~~h~~~sG~iD~v~~~e---~~a~~~~r~lls 247 (253)
T d1on3a1 219 EAHMAISGNIHFVAEDD---DAAELIAKKLLS 247 (253)
T ss_dssp HHHHHTTCCCSEEESSH---HHHHHHHHHHHH
T ss_pred HHhhhccccceEEECCH---HHHHHHHHHHHH
Confidence 34579999999764 345566665554
|
| >d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD species: Escherichia coli [TaxId: 562]
Probab=98.12 E-value=2.1e-05 Score=58.95 Aligned_cols=135 Identities=19% Similarity=0.272 Sum_probs=78.8
Q ss_pred HHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhH-H
Q 030339 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGL-E 82 (179)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~-~ 82 (179)
.+..+.+.+.+..- -+|.++-+ .|..+.+- ......+.........+..-..|+|+++.|+|.||+. .
T Consensus 119 Ki~~a~e~A~~~~l-PlI~~~~s------gG~r~~e~----~~sl~~~~~~~~~~~~~~~~~vP~I~v~~g~~~GG~aa~ 187 (263)
T d2f9yb1 119 RFVRAVEQALEDNC-PLICFSAS------GGARMQEA----LMSLMQMAKTSAALAKMQERGLPYISVLTDPTMGGVSAS 187 (263)
T ss_dssp HHHHHHHHHHHHTC-CEEEEEEE------SSBCGGGT----HHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEHHHHTT
T ss_pred HHhHHHHHHHHcCC-CeEEEecC------CCcccccc----cchhhcchhHHHHHHHHHhCCCceEEEecCCcchHHHhh
Confidence 45556666655533 35555443 23333221 1111222233334444556788999999999999875 5
Q ss_pred HHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCc-----CHHHHHhcCccccccCCChHH
Q 030339 83 MALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKV-----SGKDAMSLGLVNYYVPAGQAQ 157 (179)
Q Consensus 83 l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~-----~a~~a~~~Glv~~v~~~~~~~ 157 (179)
+++.+|++++.+.+.+++...+ .... .+|+.+ +++-..+.|.||.++++++..
T Consensus 188 ~~~~~d~i~~~~~s~i~~aGP~--------------------vve~--~~ge~~~e~~g~a~~~~~~G~iD~vv~~ee~~ 245 (263)
T d2f9yb1 188 FAMLGDLNIAEPKALIGFAGPR--------------------VIEQ--TVREKLPPGFQRSEFLIEKGAIDMIVRRPEMR 245 (263)
T ss_dssp GGGCCSEEEECTTCBEESSCHH--------------------HHHH--HHTSCCCTTTTBHHHHGGGTCCSEECCHHHHH
T ss_pred hhhcCceEeeecceeeeccCHH--------------------HHhh--hcCCcCChhhccHHHHHhCCCCCEEECCHHHH
Confidence 8888899999888887764332 1110 122322 344455789999999876665
Q ss_pred HHHHHHHHHHhccC
Q 030339 158 LKALEIAQEINQKV 171 (179)
Q Consensus 158 ~~a~~~a~~~~~~~ 171 (179)
++..++.+.|...|
T Consensus 246 ~~l~~~l~~L~~~p 259 (263)
T d2f9yb1 246 LKLASILAKLMNLP 259 (263)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhhCC
Confidence 55555555554443
|
| >d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Thermotoga maritima [TaxId: 2336]
Probab=97.98 E-value=0.0002 Score=53.07 Aligned_cols=83 Identities=22% Similarity=0.312 Sum_probs=58.0
Q ss_pred cCCCcEEEEEcccccchhHHHHhhcCEEEEcCC-ceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHH
Q 030339 63 ALPIPTIAVIDGAALGGGLEMALACDLRICGEA-ALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 141 (179)
Q Consensus 63 ~~~kp~ia~v~G~a~g~G~~l~~~~D~~va~~~-a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a 141 (179)
.-..|+|+++.|+|.||+......||++|+.++ +.+.+.. +.... . .+|+.++.++.
T Consensus 156 s~~iP~I~vv~G~~~gG~a~~~~~~d~~im~~~~a~i~~aG--------------------p~vv~-~-~~ge~~~~eel 213 (251)
T d1vrga1 156 SGVVPQITVIAGPCAGGAVYSPALTDFIVMVDQTARMFITG--------------------PNVIK-A-VTGEEISQEDL 213 (251)
T ss_dssp TTTSCEEEEEEEEEBGGGGHHHHHSSEEEEETTTCBCBSSC--------------------HHHHH-H-HHCCCCCHHHH
T ss_pred CCCCCEEEEEccCccccceehhhhCceEEEEccceeEEecC--------------------chhhh-h-hcCCcCChHHc
Confidence 457899999999999999999999999998755 4443221 11111 1 35677877764
Q ss_pred -------HhcCccccccCCChHHHHHHHHHHHHhcc
Q 030339 142 -------MSLGLVNYYVPAGQAQLKALEIAQEINQK 170 (179)
Q Consensus 142 -------~~~Glv~~v~~~~~~~~~a~~~a~~~~~~ 170 (179)
.+.|.+|.+++++ +++.+.++++.++
T Consensus 214 Gga~~h~~~sG~~D~v~~de---~~a~~~ir~lLs~ 246 (251)
T d1vrga1 214 GGAMVHNQKSGNAHFLADND---EKAMSLVRTLLSY 246 (251)
T ss_dssp HBHHHHHHTSCCCSEEESSH---HHHHHHHHHHHTT
T ss_pred cchhhhhhccccceEEECCH---HHHHHHHHHHHHh
Confidence 4579999999764 4555666666543
|
| >d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Streptomyces coelicolor [TaxId: 1902]
Probab=97.96 E-value=0.00017 Score=53.69 Aligned_cols=81 Identities=19% Similarity=0.270 Sum_probs=54.7
Q ss_pred cCCCcEEEEEcccccchhHHHHhhcCEEEEcC-CceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHHH
Q 030339 63 ALPIPTIAVIDGAALGGGLEMALACDLRICGE-AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 141 (179)
Q Consensus 63 ~~~kp~ia~v~G~a~g~G~~l~~~~D~~va~~-~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~a 141 (179)
.-..|+|+++.|+|.||+......||++++.+ .+.+++..+ +... ..+|+.++.+|+
T Consensus 158 s~~vP~I~vv~G~~~gG~a~~~~~~~~vim~~~~a~i~~aGP--------------------~vv~--~~~ge~i~~eel 215 (258)
T d1xnya1 158 SGVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFITGP--------------------DVIK--TVTGEDVGFEEL 215 (258)
T ss_dssp TTTSCEEEEECSEEEGGGGHHHHHSSEEEEETTTCEEESSCH--------------------HHHH--HHHCCCCCHHHH
T ss_pred cCCCCEEEEEcCCcChhHHHHHHhccchhhcccceEEEecCH--------------------HHHH--HHhcCccChHHh
Confidence 34689999999999999999998899888775 456654322 1111 235667777664
Q ss_pred -------HhcCccccccCCChHHHHHHHHHHHHh
Q 030339 142 -------MSLGLVNYYVPAGQAQLKALEIAQEIN 168 (179)
Q Consensus 142 -------~~~Glv~~v~~~~~~~~~a~~~a~~~~ 168 (179)
..-|++|.+++++ +++.+.++++.
T Consensus 216 gga~~h~~~sG~~d~v~~de---~ea~~~~r~~L 246 (258)
T d1xnya1 216 GGARTHNSTSGVAHHMAGDE---KDAVEYVKQLL 246 (258)
T ss_dssp HBHHHHHHTSSCCSEEESSH---HHHHHHHHHHH
T ss_pred ccHHHHHhcCCeeEEEeCCH---HHHHHHHHHHH
Confidence 4569999999753 34444444443
|
| >d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.90 E-value=0.00018 Score=53.59 Aligned_cols=82 Identities=24% Similarity=0.267 Sum_probs=55.3
Q ss_pred hcCCCcEEEEEcccccchhHHHHhhcCEEEEcCC-ceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCcCHHH
Q 030339 62 EALPIPTIAVIDGAALGGGLEMALACDLRICGEA-ALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKD 140 (179)
Q Consensus 62 ~~~~kp~ia~v~G~a~g~G~~l~~~~D~~va~~~-a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~~ 140 (179)
..-..|+|+++.|+|.||+......||++|+.++ +.+.+.. ++..+ ..+|+.++.+|
T Consensus 158 ~~~~vP~I~~v~G~~~gG~a~~~~~~d~~vm~~~~a~i~~aG--------------------P~vV~--~~~ge~~~~ee 215 (258)
T d2a7sa1 158 ASGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQTSQMFITG--------------------PDVIK--TVTGEEVTMEE 215 (258)
T ss_dssp HTTTSCEEEEECSCCBSGGGHHHHHSSEEEEEBTTBBCBSSC--------------------HHHHH--HHHCCCCCHHH
T ss_pred HcCCCCEEEEEecCcccHHHHHHHhccceEeecCceEEEccC--------------------hhHHH--HhcCCccChhh
Confidence 3457999999999999999999999999988654 5554322 12221 12566777664
Q ss_pred H-------HhcCccccccCCC-hHHHHHHHHHH
Q 030339 141 A-------MSLGLVNYYVPAG-QAQLKALEIAQ 165 (179)
Q Consensus 141 a-------~~~Glv~~v~~~~-~~~~~a~~~a~ 165 (179)
. .+.|.+|.+++++ +..+.++++..
T Consensus 216 LGga~~h~~~sG~~D~v~~de~~a~~~~r~~Ls 248 (258)
T d2a7sa1 216 LGGAHTHMAKSGTAHYAASGEQDAFDYVRELLS 248 (258)
T ss_dssp HHBHHHHHHTSCCCSEEESSHHHHHHHHHHHHH
T ss_pred ccCHhHhhhhccccceEeCCHHHHHHHHHHHHH
Confidence 3 4679999999753 34444444433
|
| >d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Thermotoga maritima [TaxId: 2336]
Probab=97.75 E-value=0.00022 Score=53.22 Aligned_cols=145 Identities=12% Similarity=0.115 Sum_probs=87.1
Q ss_pred HHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHHHHh-
Q 030339 7 HAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMAL- 85 (179)
Q Consensus 7 ~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~- 85 (179)
+.++.++.. ++=.|.|.-. .+|..|.+- +.....+...+++..+.++..|.|+.+-|.++|+|..-..
T Consensus 93 ~fi~lc~~~-~iPli~l~Dt--pGf~~G~~~--------E~~g~~~~ga~~~~a~a~~~vP~i~viir~~yG~g~~am~~ 161 (264)
T d1vrga2 93 RFIRFLDAF-NIPILTFVDT--PGYLPGVAQ--------EHGGIIRHGAKLLYAYSEATVPKITVILRKAYGGAYIAMGS 161 (264)
T ss_dssp HHHHHHHHT-TCCEEEEEEE--CCBCCCHHH--------HHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTC
T ss_pred HHHHHHHHh-CCceEEEeec--ccccccHHH--------HHHhHHHHHHHHHHHHhcCCCCEEEEEeCCcccHHhhhccC
Confidence 344444444 3345555443 335555432 3344567778899999999999999999999998764332
Q ss_pred ---hcCEEEEcCCceeecccccccccCCcchhhhhhccc---C-H-HHHHHHH--hcCCCcCHHHHHhcCccccccCCCh
Q 030339 86 ---ACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLV---G-K-SVAKDII--FTGRKVSGKDAMSLGLVNYYVPAGQ 155 (179)
Q Consensus 86 ---~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~---g-~-~~a~~l~--l~g~~~~a~~a~~~Glv~~v~~~~~ 155 (179)
.+|++++++++.++.-.. .+.....+.+.+ . . ....++. ..-+.-++-.+.+.|++|.|+++.+
T Consensus 162 ~~~~~d~~~awP~a~~~vm~p------e~aa~v~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~aa~~g~iD~VIdP~d 235 (264)
T d1vrga2 162 KHLGADMVLAWPSAEIAVMGP------EGAANIIFKREIEASSNPEETRRKLIEEYKQQFANPYIAASRGYVDMVIDPRE 235 (264)
T ss_dssp GGGTCSEEEECTTCEEESSCH------HHHHHHHTHHHHHHSSCHHHHHHHHHHHHHHHTSSHHHHHHTTSSSEECCGGG
T ss_pred CccCCCeeeeccceeEEecCH------HHhhhhhhhhhhhhhhCcHHHHHHHHHHHHHHhcCHHHHHHcCCCCeeECHHH
Confidence 589999999988874322 221221111111 0 0 1111111 1112236788899999999999988
Q ss_pred HHHHHHHHHHHHh
Q 030339 156 AQLKALEIAQEIN 168 (179)
Q Consensus 156 ~~~~a~~~a~~~~ 168 (179)
.........+.+.
T Consensus 236 TR~~L~~~Le~l~ 248 (264)
T d1vrga2 236 TRKYIMRALEVCE 248 (264)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 8877655555443
|
| >d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.74 E-value=0.00018 Score=53.90 Aligned_cols=141 Identities=16% Similarity=0.183 Sum_probs=86.0
Q ss_pred HHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHHHH-
Q 030339 6 KHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMA- 84 (179)
Q Consensus 6 ~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~- 84 (179)
.+.++.++.. ++-+|.|.-. .+|..|.+ .+.....+...+++..+..++.|.|+.+-|.++|+|..-.
T Consensus 95 ~rfi~lc~~~-~iPlv~l~dt--pGf~~G~~--------~E~~g~~~~ga~~~~a~a~~~vP~isvi~~~~~G~~~~am~ 163 (271)
T d2a7sa2 95 ARFVRTCDCF-NIPIVMLVDV--PGFLPGTD--------QEYNGIIRRGAKLLYAYGEATVPKITVITRKAYGGAYCVMG 163 (271)
T ss_dssp HHHHHHHHHT-TCCEEEEEEE--CCBCCCHH--------HHHHCHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTT
T ss_pred HHHHHHHHHh-CCceEEeech--hhhhhhcc--------HHHhhHHHHHHHHHHHHHhCCCCeEEEEeCCccchhhhhhc
Confidence 3445555444 4445555443 33655543 2334456777889999999999999999999999875433
Q ss_pred ---hhcCEEEEcCCceeecccccccccCCcchhhhhhcccC-------------HHHHHHHHhcCCCcCHHHHHhcCccc
Q 030339 85 ---LACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVG-------------KSVAKDIIFTGRKVSGKDAMSLGLVN 148 (179)
Q Consensus 85 ---~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g-------------~~~a~~l~l~g~~~~a~~a~~~Glv~ 148 (179)
+.+|+++++|++.++.-.. .+.....+.+.+. .....+ ..-+.-++..+.+.|++|
T Consensus 164 ~~~~~~d~~~AwP~A~igvMgp------egaa~v~~~~~l~~~~~~~~~~~~~~~~~~~e--~~e~~~~p~~aa~~g~iD 235 (271)
T d2a7sa2 164 SKDMGCDVNLAWPTAQIAVMGA------SGAVGFVYRQQLAEAAANGEDIDKLRLRLQQE--YEDTLVNPYVAAERGYVD 235 (271)
T ss_dssp CGGGTCSEEEECTTCEEESSCH------HHHHHHHTTTTTTGGGTSSCCTTSSTTHHHHH--HHTTTSBSHHHHHHTSSS
T ss_pred ccccccceEEEecceeEeecCH------HHHHHHHHHHhhhhhhhcccchHHHHHHHHHH--HHHHhcCHHHHHHcCCCC
Confidence 2479999999998885322 2111111111111 011111 122334677888999999
Q ss_pred cccCCChHHHHHHHHHH
Q 030339 149 YYVPAGQAQLKALEIAQ 165 (179)
Q Consensus 149 ~v~~~~~~~~~a~~~a~ 165 (179)
.|+++.+..+......+
T Consensus 236 ~VIdP~dTR~~L~~~L~ 252 (271)
T d2a7sa2 236 AVIPPSHTRGYIGTALR 252 (271)
T ss_dssp EECCGGGHHHHHHHHHH
T ss_pred eeECHHHHHHHHHHHHH
Confidence 99998887666444443
|
| >d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Glutaconyl-CoA decarboxylase A subunit species: Acidaminococcus fermentans [TaxId: 905]
Probab=97.67 E-value=0.00012 Score=55.48 Aligned_cols=105 Identities=18% Similarity=0.122 Sum_probs=62.1
Q ss_pred HHhcCCCcEEEEEcccccchhHHHHhhcCEEEEcCCceeeccccc--ccccCCcchhhhhhcccCHHHHHHHHhcCCCcC
Q 030339 60 FLEALPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETG--LAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVS 137 (179)
Q Consensus 60 ~~~~~~kp~ia~v~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~--~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~ 137 (179)
.+.....|+|++|.|.|.|||...+++||++++.+++.+.+..+. -+..+...........+..... --.+-+.+-
T Consensus 175 ~ls~~~VP~Isvv~G~~~gGgAy~~~~~~~i~~~~~a~i~~~Gp~vv~~~~~~~~~~~~~~~ei~~~~g--e~~~~eeLG 252 (287)
T d1pixa2 175 ELNQLGIPVIVGIYGTNPAGGGYHSISPTVIIAHEKANMAVGGAGIMGGMNPKGHVDLEYANEIADMVD--RTGKTEPPG 252 (287)
T ss_dssp HHHHTTCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEESCCCTTCCSCCSSSSCCHHHHHHHHHHHH--TTCCCCCSS
T ss_pred HHhhcCCCeEEEecCCccccceeccccceeEEecCCeEEEEECHHHhcccchhhhhhhhhHHHHHhhhc--ccccccccc
Confidence 355678999999999999999888888888999898887664332 2222222111111110100000 001234444
Q ss_pred HHHH--HhcCccccccCCChHHHHHHHHHHHHhc
Q 030339 138 GKDA--MSLGLVNYYVPAGQAQLKALEIAQEINQ 169 (179)
Q Consensus 138 a~~a--~~~Glv~~v~~~~~~~~~a~~~a~~~~~ 169 (179)
+.+. ...|.+|.+++++ +++.+.++++.+
T Consensus 253 Ga~~H~~~sG~~d~v~~~e---~~ai~~~r~~ls 283 (287)
T d1pixa2 253 AVDIHYTETGFMREVYASE---EGVLEGIKKYVG 283 (287)
T ss_dssp BHHHHTTTSCCSCEEESSH---HHHHHHHHHHHH
T ss_pred cHHHhhhhcccceeecCCH---HHHHHHHHHHHh
Confidence 5544 3569999998763 456666666654
|
| >d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) species: Propionibacterium freudenreichii [TaxId: 1744]
Probab=97.61 E-value=6.9e-05 Score=56.10 Aligned_cols=117 Identities=13% Similarity=0.098 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHHHHh----hcCEEEEcCCceeecccccccccCCcchhhhh-hcc
Q 030339 46 EIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMAL----ACDLRICGEAALLGLPETGLAIIPGAGGTQRL-PRL 120 (179)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~----~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l-~~~ 120 (179)
+....++...+++..+.++..|.|+.+-|.++|+|..-.. ..|+++++|++.++. .++.+....+ .+.
T Consensus 121 E~~g~i~~ga~~~~a~a~~~vP~itvi~rkayG~g~~am~g~~~~~d~~~aWP~A~~~v-------Mg~Egaa~v~~~~e 193 (264)
T d1on3a2 121 EYGGIIRHGAKMLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIAV-------MGAEGAANVIFRKE 193 (264)
T ss_dssp HHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEEeccccCccccccccccCChhheeeHHhhHhhh-------ccHHHHHHHHHhhh
Confidence 3445567778899999999999999999999998755443 468888888887773 2222222222 111
Q ss_pred c---C-H-HHHHHHHh--cCCCcCHHHHHhcCccccccCCChHHHHHHHHHHHHhc
Q 030339 121 V---G-K-SVAKDIIF--TGRKVSGKDAMSLGLVNYYVPAGQAQLKALEIAQEINQ 169 (179)
Q Consensus 121 ~---g-~-~~a~~l~l--~g~~~~a~~a~~~Glv~~v~~~~~~~~~a~~~a~~~~~ 169 (179)
+ . . ..-.+.+. .-+.-++-.+.+.|+||.|+++.+.........+.+.+
T Consensus 194 l~a~~~~~~~~~~~~~e~~~~~~~p~~aA~~g~iD~VIdP~eTR~~L~~aLe~~~~ 249 (264)
T d1on3a2 194 IKAADDPDAMRAEKIEEYQNAFNTPYVAAARGQVDDVIDPADTRRKIASALEMYAT 249 (264)
T ss_dssp HHHSSCHHHHHHHHHHHHHHHHSSHHHHHHTTSSSEECCGGGHHHHHHHHHHHGGG
T ss_pred hhhhhhhhhhhHHHHHHHHHHhcCHHHHHHcCCCCeeECHHHHHHHHHHHHHHHhc
Confidence 1 0 0 00011111 11123567888999999999998877666555555443
|
| >d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Streptomyces coelicolor [TaxId: 1902]
Probab=97.60 E-value=0.00024 Score=53.05 Aligned_cols=144 Identities=14% Similarity=0.132 Sum_probs=87.0
Q ss_pred HHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHHHHh
Q 030339 6 KHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEMAL 85 (179)
Q Consensus 6 ~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l~~ 85 (179)
.+.++.++.. ++-+|.|.-. ..|-.|.+- +.....+...+++..+.+++.|.|+.+-|.++|+|.....
T Consensus 90 ~~fi~lc~~~-~iPli~l~d~--pGf~~G~~~--------E~~g~~~~ga~~~~a~a~~~vPkitvi~~~~~Gga~~~m~ 158 (263)
T d1xnya2 90 ARFVRTCDAF-NVPVLTFVDV--PGFLPGVDQ--------EHDGIIRRGAKLIFAYAEATVPLITVITRKAFGGAYDVMG 158 (263)
T ss_dssp HHHHHHHHHT-TCCEEEEEEE--CCBCCCHHH--------HHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTT
T ss_pred HHHHHHHHHh-CCceEEeecc--cccccchhH--------HHHhHHHHHHHHHHHHHccCCCeEEEEecCccccceeccC
Confidence 3444445444 3345555443 335555432 3344566778889999999999999999999998765432
Q ss_pred ----hcCEEEEcCCceeecccccccccCCcchhhhhhccc----C------HHHHHHHHhcCCCcCHHHHHhcCcccccc
Q 030339 86 ----ACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLV----G------KSVAKDIIFTGRKVSGKDAMSLGLVNYYV 151 (179)
Q Consensus 86 ----~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~----g------~~~a~~l~l~g~~~~a~~a~~~Glv~~v~ 151 (179)
..|+++++|++.++.-.. .+.....+.+.. . .....+.. -...++..+.+.|+||.|+
T Consensus 159 ~~~~~~d~~~awP~a~~gvm~p------e~aa~il~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~p~~aA~~g~iD~VI 230 (263)
T d1xnya2 159 SKHLGADLNLAWPTAQIAVMGA------QGAVNILHRRTIADAGDDAEATRARLIQEYE--DALLNPYTAAERGYVDAVI 230 (263)
T ss_dssp CGGGTCSEEEECTTCEEESSCH------HHHHHHHTHHHHHSCCTTCSSSHHHHHHHHH--HHHSSSHHHHHHTSSSEEC
T ss_pred CcccCCcEEEEcchhhhhccCH------HHHHHHHHHHHHhhhccchHHHHHHHHHHHH--HHhcCHHHHHHcccCCccc
Confidence 368999999998885332 222221111110 0 00111111 1123567788899999999
Q ss_pred CCChHHHHHHHHHHHHh
Q 030339 152 PAGQAQLKALEIAQEIN 168 (179)
Q Consensus 152 ~~~~~~~~a~~~a~~~~ 168 (179)
++.+.........+.+.
T Consensus 231 dP~dTR~~L~~~L~~l~ 247 (263)
T d1xnya2 231 MPSDTRRHIVRGLRQLR 247 (263)
T ss_dssp CGGGHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99888876666555554
|
| >d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Glutaconyl-CoA decarboxylase A subunit species: Acidaminococcus fermentans [TaxId: 905]
Probab=97.29 E-value=0.0024 Score=48.24 Aligned_cols=150 Identities=16% Similarity=0.115 Sum_probs=88.1
Q ss_pred HHHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccchhHHH
Q 030339 4 GLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAALGGGLEM 83 (179)
Q Consensus 4 ~l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~g~G~~l 83 (179)
...+.++.++.. ++-+|.|.-. ..|-.|.+- +.....+...+++..+.++..|.|+.+-|.++|+|...
T Consensus 106 K~~rfi~lc~~~-~iPlv~l~D~--pGf~~g~~~--------E~~g~~r~ga~~~~a~~~~~VP~isvi~r~~~G~a~~a 174 (299)
T d1pixa3 106 KMNEFVTLCARD-RLPIVWIQDT--TGIDVGNDA--------EKAELLGLGQSLIYSIQTSHIPQFEITLRKGTAAAHYV 174 (299)
T ss_dssp HHHHHHHHHHHT-TCCEEEEECC--CEECCSHHH--------HHTTHHHHHHHHHHHHHTCCCCEEEEECSEEETTHHHH
T ss_pred HHHHHHHHHHHc-CCeEEEEEeC--CCcccchHH--------HhhhHHHHHHHHHHHHHhhcceeEEEEecccccccccc
Confidence 345556666655 3345555433 346655433 23345666778889999999999999999999988554
Q ss_pred Hhh----cCE--EEEcCCceeecccccccccCCcc-hhhhhhcccCH------------HHHHHHHhc-CCCcCHHHHHh
Q 030339 84 ALA----CDL--RICGEAALLGLPETGLAIIPGAG-GTQRLPRLVGK------------SVAKDIIFT-GRKVSGKDAMS 143 (179)
Q Consensus 84 ~~~----~D~--~va~~~a~~~~p~~~~G~~p~~~-~~~~l~~~~g~------------~~a~~l~l~-g~~~~a~~a~~ 143 (179)
... .|+ .++++.+.++ +.+..+ ....+.+.+.. ..-.++... -+.-++..+.+
T Consensus 175 m~g~~~~~~~~~~~awP~aeig-------vMg~E~aa~vl~~~el~~~~~~~~~~~e~~e~~~~~~~~~~~~~sp~~aAs 247 (299)
T d1pixa3 175 LGGPQGNDTNAFSIGTAATEIA-------VMNGETAATAMYSRRLAKDRKAGKDLQPTIDKMNNLIQAFYTKSRPKVCAE 247 (299)
T ss_dssp TTCTTCTTTEEEEEECTTCEEE-------SSCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred cccCccCcccceecCCCccccc-------cccchhhheeehhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 332 343 3445555554 443322 22222222210 001111110 12357788899
Q ss_pred cCccccccCCChHHHHHHHHHHHHhccC
Q 030339 144 LGLVNYYVPAGQAQLKALEIAQEINQKV 171 (179)
Q Consensus 144 ~Glv~~v~~~~~~~~~a~~~a~~~~~~~ 171 (179)
.|+||.|+++.+.........+.+.+++
T Consensus 248 ~~~iD~IIDP~dTR~~L~~~Le~~~~~~ 275 (299)
T d1pixa3 248 LGLVDEIVDMNKIRGYVEAFTEAAYQNP 275 (299)
T ss_dssp HTSSSEECCTTTHHHHHHHHHHHHTTSC
T ss_pred hCCcCeeECHHHHHHHHHHHHHHHHhCc
Confidence 9999999999988877766666555544
|
| >d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.10 E-value=0.0011 Score=50.88 Aligned_cols=81 Identities=20% Similarity=0.163 Sum_probs=55.6
Q ss_pred CCCcEEEEEcccccchhHHHHhhcCEEEEcCCceeecccccccccCCcchhhhhhcccCHHHHHHHHhcCCCc--C----
Q 030339 64 LPIPTIAVIDGAALGGGLEMALACDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKV--S---- 137 (179)
Q Consensus 64 ~~kp~ia~v~G~a~g~G~~l~~~~D~~va~~~a~~~~p~~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~--~---- 137 (179)
-..|+|++|.|.|.|+|..++..||++|+.+++.+.+... ..+.+. +|+.+ |
T Consensus 239 ~~iptis~v~G~~vG~gAyl~~L~d~vIm~~~s~i~ltGp-----------~~l~~~-----------lG~eVy~s~~eL 296 (333)
T d1uyra1 239 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIILTGA-----------PAINKM-----------LGREVYTSNLQL 296 (333)
T ss_dssp HHSCEEEEESSCEETHHHHHHHHTCCEEEETTCCEESSCH-----------HHHHHH-----------SSSCCCSCTHHH
T ss_pred CCCCEEEEEeCCccccceeecccccEEEEeCCceEEeeCH-----------HHHHHh-----------cCccccCChhHh
Confidence 4689999999999999999999999999999987664322 112111 23332 2
Q ss_pred --HHHHHhcCccccccCCChHHHHHHHHHHHHhc
Q 030339 138 --GKDAMSLGLVNYYVPAGQAQLKALEIAQEINQ 169 (179)
Q Consensus 138 --a~~a~~~Glv~~v~~~~~~~~~a~~~a~~~~~ 169 (179)
++-..+-|.+|.+++++ .++.+.++++.+
T Consensus 297 GG~~i~~~nGv~h~~a~dd---~eai~~i~~~LS 327 (333)
T d1uyra1 297 GGTQIMYNNGVSHLTAVDD---LAGVEKIVEWMS 327 (333)
T ss_dssp HSHHHHHHHTSSSEEESSH---HHHHHHHHHHHT
T ss_pred CCHhHHhhCCCceEEeCCH---HHHHHHHHHHHh
Confidence 22234689999998754 455555555554
|
| >d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.09 E-value=0.016 Score=45.03 Aligned_cols=85 Identities=15% Similarity=0.140 Sum_probs=50.6
Q ss_pred HHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEE--cccccchhHHH
Q 030339 6 KHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVI--DGAALGGGLEM 83 (179)
Q Consensus 6 ~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v--~G~a~g~G~~l 83 (179)
.+.+..+.+.-++-+|+|.- -++|+.|-+- +....++....++..+.+++.|+|+.| .|...||++..
T Consensus 119 A~~i~d~cd~~~lPLi~l~D--~pGF~~G~~~--------E~~gilr~GA~iv~A~~~~~vP~i~vI~~~g~~~GGa~vv 188 (404)
T d1uyra2 119 AQAINDFNNGEQLPMMILAN--WRGFSGGQRD--------MFNEVLKYGSFIVDALVDYKQPIIIYIPPTGELRGGSWVV 188 (404)
T ss_dssp HHHHHHHHTTSCCCEEECCC--CCCBCC--------------CTHHHHHHHHHHHHHTCCSCEEEEECTTCEEEHHHHHT
T ss_pred HHHHHHhhhccccceEEeec--CCcccCcHHH--------HHHHHHHHHHHHHHHHHhcCCCEEEEEeCCcccchhhhhc
Confidence 34454444444566777654 3668877743 223445666778899999999999999 57667755443
Q ss_pred Hh---hcC--EEEEcCCceeec
Q 030339 84 AL---ACD--LRICGEAALLGL 100 (179)
Q Consensus 84 ~~---~~D--~~va~~~a~~~~ 100 (179)
.- ..| .++|.++++++.
T Consensus 189 ~~~~~~~~~~~~yAwP~a~~gV 210 (404)
T d1uyra2 189 VDPTINADQMEMYADVNARAGV 210 (404)
T ss_dssp TCGGGGTTTEEEEEETTCEEES
T ss_pred ccCccCCccceEEECCcccccc
Confidence 32 112 256777777664
|
| >d2csua2 c.23.4.1 (A:130-290) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Succinyl-CoA synthetase domains family: Succinyl-CoA synthetase domains domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=85.70 E-value=1.1 Score=29.86 Aligned_cols=52 Identities=10% Similarity=0.102 Sum_probs=34.6
Q ss_pred HHHHHHHhhcCCCceEEEEEeCCCCccccccCccccccCchhHHHHHHHHHHHHHHHhcCCCcEEEEEccccc
Q 030339 5 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKVLQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDGAAL 77 (179)
Q Consensus 5 l~~~l~~~~~d~~v~~vvl~g~~~~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ia~v~G~a~ 77 (179)
..+.|+.+.+||++++|++-.++.+ |- .+ +.+..++.. ..||+|+..-|..-
T Consensus 61 ~~d~l~~l~~D~~t~~i~l~~E~~~------~~----------~~----f~~~~r~~~-~~Kpvv~~k~G~s~ 112 (161)
T d2csua2 61 FAELMEYLADTEEDKAIALYIEGVR------NG----------KK----FMEVAKRVT-KKKPIIALKAGKSE 112 (161)
T ss_dssp HHHHHHHHTTCSSCCEEEEEESCCS------CH----------HH----HHHHHHHHH-HHSCEEEEECC---
T ss_pred HHHHHHHHhcCCCCcEEEEEecCCc------CH----------HH----HHHHHHHHh-ccCCeeEEEeeccc
Confidence 5688999999999999999998422 11 12 233344443 35999999887753
|